Query 040075
Match_columns 254
No_of_seqs 268 out of 1657
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 04:52:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040075.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040075hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0014 MADS box transcription 100.0 6.3E-39 1.4E-43 272.6 3.2 159 1-160 1-185 (195)
2 cd00265 MADS_MEF2_like MEF2 (m 100.0 1.1E-33 2.4E-38 206.6 4.1 77 2-80 1-77 (77)
3 cd00266 MADS_SRF_like SRF-like 100.0 4.9E-31 1.1E-35 195.4 4.3 77 2-79 1-77 (83)
4 smart00432 MADS MADS domain. 100.0 2.2E-30 4.7E-35 179.2 3.8 59 2-60 1-59 (59)
5 cd00120 MADS MADS: MCM1, Agamo 100.0 1.5E-29 3.2E-34 175.2 3.4 59 2-60 1-59 (59)
6 PF00319 SRF-TF: SRF-type tran 99.9 2E-27 4.3E-32 159.4 -2.1 51 9-59 1-51 (51)
7 PF01486 K-box: K-box region; 99.8 1.1E-19 2.5E-24 139.2 11.0 99 71-174 1-99 (100)
8 KOG0015 Regulator of arginine 99.8 2.1E-19 4.5E-24 158.0 2.0 77 2-78 63-146 (338)
9 COG5068 ARG80 Regulator of arg 99.4 9.1E-14 2E-18 127.6 2.3 61 1-61 81-141 (412)
10 PF06005 DUF904: Protein of un 91.1 2.4 5.2E-05 30.4 8.2 49 121-174 1-49 (72)
11 PHA03155 hypothetical protein; 81.8 14 0.00031 28.7 8.3 60 85-145 7-66 (115)
12 PRK04098 sec-independent trans 81.4 0.43 9.3E-06 39.4 -0.2 30 42-75 14-43 (158)
13 PRK10884 SH3 domain-containing 79.8 21 0.00045 30.8 9.6 75 91-171 91-167 (206)
14 cd07429 Cby_like Chibby, a nuc 78.8 3.5 7.6E-05 31.9 4.1 22 153-174 75-96 (108)
15 PF06698 DUF1192: Protein of u 78.6 4.1 8.8E-05 28.1 3.9 31 111-142 12-42 (59)
16 PF01166 TSC22: TSC-22/dip/bun 78.1 5.9 0.00013 27.2 4.5 27 146-172 17-43 (59)
17 KOG4797 Transcriptional regula 77.8 12 0.00025 29.0 6.6 40 132-171 49-88 (123)
18 PRK13169 DNA replication intia 77.2 20 0.00044 27.8 7.9 48 123-175 7-54 (110)
19 PF06156 DUF972: Protein of un 75.1 24 0.00053 27.2 7.9 47 123-174 7-53 (107)
20 PF10584 Proteasome_A_N: Prote 75.0 0.35 7.6E-06 26.9 -1.7 13 44-56 4-16 (23)
21 KOG0859 Synaptobrevin/VAMP-lik 74.8 7.1 0.00015 33.5 5.2 139 8-173 33-183 (217)
22 PHA03162 hypothetical protein; 74.1 35 0.00077 27.3 8.6 62 85-146 12-76 (135)
23 PF05812 Herpes_BLRF2: Herpesv 73.8 16 0.00034 28.8 6.5 60 86-146 3-66 (118)
24 PRK01919 tatB sec-independent 66.2 2.1 4.5E-05 35.7 0.2 28 43-74 15-42 (169)
25 smart00787 Spc7 Spc7 kinetocho 65.3 1E+02 0.0022 28.3 11.1 59 117-175 197-257 (312)
26 PF08317 Spc7: Spc7 kinetochor 65.2 79 0.0017 29.0 10.4 59 117-175 202-262 (325)
27 PF10211 Ax_dynein_light: Axon 63.0 43 0.00093 28.3 7.7 13 63-75 92-104 (189)
28 COG2433 Uncharacterized conser 62.1 60 0.0013 32.5 9.3 83 90-175 419-506 (652)
29 PF10504 DUF2452: Protein of u 61.9 45 0.00098 27.6 7.2 43 122-164 28-73 (159)
30 PF06156 DUF972: Protein of un 59.5 68 0.0015 24.7 7.5 30 146-175 18-47 (107)
31 PF07106 TBPIP: Tat binding pr 57.4 44 0.00096 27.4 6.7 55 90-149 83-137 (169)
32 COG4467 Regulator of replicati 57.4 70 0.0015 24.8 7.0 48 123-175 7-54 (114)
33 PF00170 bZIP_1: bZIP transcri 57.2 58 0.0013 22.1 6.3 36 136-175 16-51 (64)
34 KOG4797 Transcriptional regula 55.6 23 0.00051 27.4 4.2 34 139-173 64-97 (123)
35 smart00338 BRLZ basic region l 55.3 64 0.0014 22.0 6.7 37 136-176 16-52 (65)
36 PRK01371 sec-independent trans 55.1 4.7 0.0001 32.6 0.4 16 43-59 15-30 (137)
37 PF07926 TPR_MLP1_2: TPR/MLP1/ 54.8 1E+02 0.0022 24.3 8.2 28 147-174 102-129 (132)
38 TIGR02449 conserved hypothetic 53.2 77 0.0017 22.2 6.8 45 125-174 1-45 (65)
39 TIGR02894 DNA_bind_RsfA transc 53.0 1.2E+02 0.0026 25.2 8.3 57 118-174 77-135 (161)
40 COG3074 Uncharacterized protei 52.8 83 0.0018 22.5 8.0 35 121-160 1-35 (79)
41 PRK10884 SH3 domain-containing 51.8 1E+02 0.0023 26.5 8.2 23 153-175 128-150 (206)
42 KOG1962 B-cell receptor-associ 51.4 87 0.0019 27.3 7.6 53 121-173 155-209 (216)
43 PHA02592 52 DNA topisomerase I 50.4 1.8E+02 0.0038 28.2 10.3 42 26-74 285-326 (439)
44 KOG4603 TBP-1 interacting prot 47.1 89 0.0019 26.3 6.7 63 85-147 78-142 (201)
45 PF07888 CALCOCO1: Calcium bin 46.9 1.7E+02 0.0037 29.1 9.7 29 31-60 78-113 (546)
46 PF07716 bZIP_2: Basic region 44.9 89 0.0019 20.6 6.4 36 136-175 15-50 (54)
47 PF15188 CCDC-167: Coiled-coil 44.3 81 0.0018 23.3 5.5 37 119-167 31-67 (85)
48 KOG0709 CREB/ATF family transc 43.9 42 0.00091 32.4 4.9 57 120-176 233-312 (472)
49 KOG0971 Microtubule-associated 43.9 2.5E+02 0.0055 29.8 10.5 87 88-175 327-428 (1243)
50 PF14662 CCDC155: Coiled-coil 43.8 1.8E+02 0.0039 24.9 8.2 29 145-173 62-90 (193)
51 PF09158 MotCF: Bacteriophage 43.4 8.9 0.00019 29.4 0.3 53 5-74 19-72 (103)
52 PF14662 CCDC155: Coiled-coil 43.4 2.1E+02 0.0046 24.5 9.1 49 123-172 69-117 (193)
53 PF14645 Chibby: Chibby family 43.3 41 0.00088 26.3 4.0 23 152-174 73-95 (116)
54 PF09278 MerR-DNA-bind: MerR, 43.2 89 0.0019 20.9 5.4 45 120-165 14-58 (65)
55 PF06785 UPF0242: Uncharacteri 42.9 1.6E+02 0.0034 27.5 8.2 43 132-175 131-173 (401)
56 PRK13169 DNA replication intia 41.9 1.6E+02 0.0035 22.8 7.1 30 146-175 18-47 (110)
57 PF08614 ATG16: Autophagy prot 41.6 1.5E+02 0.0032 25.0 7.6 22 152-173 160-181 (194)
58 smart00340 HALZ homeobox assoc 41.2 60 0.0013 20.8 3.7 24 153-176 8-31 (44)
59 cd00187 TOP4c DNA Topoisomeras 40.6 2.1E+02 0.0046 27.6 9.2 62 4-74 253-327 (445)
60 PF07888 CALCOCO1: Calcium bin 40.3 2.5E+02 0.0053 28.0 9.7 22 152-173 215-236 (546)
61 PRK04654 sec-independent trans 40.0 3.8 8.2E-05 35.4 -2.4 27 43-73 15-41 (214)
62 PF11365 DUF3166: Protein of u 39.7 1E+02 0.0022 23.4 5.5 32 144-175 9-40 (96)
63 PF14009 DUF4228: Domain of un 39.6 32 0.00069 27.7 3.1 33 40-74 14-46 (181)
64 PRK15422 septal ring assembly 39.1 1.5E+02 0.0033 21.6 10.0 42 121-167 1-42 (79)
65 COG0139 HisI Phosphoribosyl-AM 38.7 20 0.00043 27.9 1.6 38 16-53 49-95 (111)
66 PF09789 DUF2353: Uncharacteri 38.6 2.9E+02 0.0063 25.5 9.4 40 136-176 73-112 (319)
67 PF03980 Nnf1: Nnf1 ; InterPr 38.2 1.1E+02 0.0025 23.0 5.8 46 117-175 60-105 (109)
68 PRK09343 prefoldin subunit bet 38.2 73 0.0016 24.9 4.8 42 132-174 68-109 (121)
69 COG1579 Zn-ribbon protein, pos 37.4 2.9E+02 0.0064 24.4 9.6 21 122-142 87-107 (239)
70 PF04645 DUF603: Protein of un 37.3 2.5E+02 0.0055 23.6 8.0 25 125-149 139-163 (181)
71 KOG3759 Uncharacterized RUN do 36.6 2.5E+02 0.0053 27.5 8.7 51 117-174 198-251 (621)
72 cd01109 HTH_YyaN Helix-Turn-He 36.4 1.7E+02 0.0037 22.1 6.6 53 120-173 57-109 (113)
73 KOG0804 Cytoplasmic Zn-finger 36.0 2.6E+02 0.0055 27.2 8.7 34 139-172 378-411 (493)
74 PRK11637 AmiB activator; Provi 35.9 3.3E+02 0.0071 25.8 9.8 72 90-171 51-124 (428)
75 KOG4643 Uncharacterized coiled 35.0 82 0.0018 33.5 5.7 46 131-176 281-327 (1195)
76 PF01502 PRA-CH: Phosphoribosy 34.2 15 0.00032 26.6 0.2 37 17-53 18-63 (75)
77 COG4917 EutP Ethanolamine util 34.2 27 0.00059 28.2 1.7 25 35-59 59-83 (148)
78 PF06005 DUF904: Protein of un 34.0 1.5E+02 0.0032 21.2 5.3 31 143-173 11-41 (72)
79 PRK00888 ftsB cell division pr 33.9 1.3E+02 0.0028 23.0 5.4 30 146-175 30-59 (105)
80 TIGR01478 STEVOR variant surfa 33.8 95 0.0021 28.2 5.3 45 7-73 25-69 (295)
81 PF04849 HAP1_N: HAP1 N-termin 33.3 60 0.0013 29.8 4.0 24 152-175 162-185 (306)
82 TIGR03007 pepcterm_ChnLen poly 33.2 3.8E+02 0.0083 25.7 9.9 72 64-136 140-216 (498)
83 cd04776 HTH_GnyR Helix-Turn-He 33.1 2.3E+02 0.0049 21.8 7.0 55 120-174 55-111 (118)
84 PF02183 HALZ: Homeobox associ 33.1 1.4E+02 0.0029 19.3 5.4 32 143-174 5-36 (45)
85 PF10186 Atg14: UV radiation r 33.0 3.3E+02 0.0072 23.7 9.0 9 51-59 7-15 (302)
86 PF04977 DivIC: Septum formati 32.5 1.6E+02 0.0034 20.4 5.4 29 148-176 22-50 (80)
87 PF04880 NUDE_C: NUDE protein, 32.4 94 0.002 25.9 4.7 43 126-173 2-47 (166)
88 TIGR01069 mutS2 MutS2 family p 32.2 4E+02 0.0088 27.6 10.3 42 123-164 538-579 (771)
89 KOG0243 Kinesin-like protein [ 31.3 7E+02 0.015 26.9 12.3 60 89-148 407-472 (1041)
90 PRK00409 recombination and DNA 31.0 4.7E+02 0.01 27.2 10.5 43 123-165 543-585 (782)
91 PF13870 DUF4201: Domain of un 30.9 3E+02 0.0065 22.6 10.9 83 90-176 10-103 (177)
92 PF09941 DUF2173: Uncharacteri 30.5 41 0.00089 26.0 2.1 27 32-59 3-29 (108)
93 COG0165 ArgH Argininosuccinate 30.4 2.2E+02 0.0048 27.7 7.5 41 135-175 102-142 (459)
94 PF05529 Bap31: B-cell recepto 30.4 3.2E+02 0.0069 22.7 8.1 51 123-173 124-184 (192)
95 TIGR02338 gimC_beta prefoldin, 29.8 2.5E+02 0.0054 21.3 10.1 44 129-173 61-104 (110)
96 KOG1853 LIS1-interacting prote 29.6 76 0.0016 28.5 3.9 25 123-147 86-110 (333)
97 COG4831 Roadblock/LC7 domain [ 29.6 54 0.0012 24.9 2.5 32 30-62 3-34 (109)
98 cd04769 HTH_MerR2 Helix-Turn-H 29.3 1.7E+02 0.0037 22.3 5.6 54 120-173 56-109 (116)
99 smart00338 BRLZ basic region l 29.3 1.8E+02 0.004 19.6 5.3 28 146-173 36-63 (65)
100 PF09755 DUF2046: Uncharacteri 29.0 4.6E+02 0.01 24.1 9.7 86 90-175 182-279 (310)
101 PF10226 DUF2216: Uncharacteri 29.0 3.7E+02 0.008 23.0 8.0 87 64-164 18-122 (195)
102 TIGR03752 conj_TIGR03752 integ 28.9 4.5E+02 0.0098 25.7 9.3 70 90-173 70-139 (472)
103 KOG0977 Nuclear envelope prote 28.7 3.6E+02 0.0079 26.9 8.7 16 91-106 111-126 (546)
104 KOG0930 Guanine nucleotide exc 28.6 1.9E+02 0.0042 26.4 6.3 43 118-169 8-50 (395)
105 cd01107 HTH_BmrR Helix-Turn-He 28.3 2.6E+02 0.0056 21.0 6.3 48 120-173 58-105 (108)
106 PF11559 ADIP: Afadin- and alp 28.1 3.1E+02 0.0067 21.8 9.5 26 149-174 100-125 (151)
107 TIGR03017 EpsF chain length de 28.0 4.4E+02 0.0096 24.7 9.2 99 35-136 123-227 (444)
108 PF06785 UPF0242: Uncharacteri 27.6 4.1E+02 0.0088 24.9 8.3 82 89-175 71-152 (401)
109 PF01920 Prefoldin_2: Prefoldi 27.5 63 0.0014 23.8 2.7 26 148-173 74-99 (106)
110 PRK01770 sec-independent trans 27.3 34 0.00074 28.7 1.3 28 43-74 15-42 (171)
111 COG4477 EzrA Negative regulato 27.2 4.7E+02 0.01 26.1 9.1 59 117-176 371-429 (570)
112 TIGR02231 conserved hypothetic 26.9 4.9E+02 0.011 25.4 9.5 45 120-165 123-167 (525)
113 PF11629 Mst1_SARAH: C termina 26.6 1.1E+02 0.0023 20.3 3.3 18 117-134 4-21 (49)
114 PRK13729 conjugal transfer pil 26.5 3.2E+02 0.007 26.7 7.9 29 146-174 93-121 (475)
115 COG1579 Zn-ribbon protein, pos 26.5 2.7E+02 0.0058 24.7 6.8 11 133-143 108-118 (239)
116 PF04849 HAP1_N: HAP1 N-termin 26.3 5.2E+02 0.011 23.8 9.5 90 86-175 160-266 (306)
117 PRK15067 ethanolamine ammonia 26.1 33 0.00072 32.9 1.1 15 222-236 153-167 (461)
118 PF09744 Jnk-SapK_ap_N: JNK_SA 25.6 3.8E+02 0.0083 22.0 9.0 28 148-175 87-114 (158)
119 PRK05561 DNA topoisomerase IV 25.4 5.6E+02 0.012 26.5 9.9 58 8-74 291-362 (742)
120 cd04787 HTH_HMRTR_unk Helix-Tu 25.4 2.9E+02 0.0062 21.6 6.3 53 120-173 57-109 (133)
121 PF14263 DUF4354: Domain of un 25.4 26 0.00056 27.8 0.2 42 11-57 41-82 (124)
122 PF09798 LCD1: DNA damage chec 25.3 3.6E+02 0.0077 27.5 8.2 52 124-175 4-58 (654)
123 PLN03230 acetyl-coenzyme A car 25.2 3.8E+02 0.0083 25.8 8.0 73 54-138 39-119 (431)
124 TIGR01410 tatB twin arginine-t 24.9 22 0.00048 25.9 -0.2 29 43-75 14-42 (80)
125 cd04770 HTH_HMRTR Helix-Turn-H 24.8 3E+02 0.0064 21.0 6.2 53 120-173 57-109 (123)
126 PHA02109 hypothetical protein 24.7 3.6E+02 0.0077 22.9 6.8 43 110-165 178-222 (233)
127 PF12548 DUF3740: Sulfatase pr 24.5 1.2E+02 0.0026 24.7 4.0 39 133-172 97-135 (145)
128 KOG0994 Extracellular matrix g 24.5 2.2E+02 0.0048 31.2 6.6 110 22-148 1177-1291(1758)
129 PF09726 Macoilin: Transmembra 24.4 6.5E+02 0.014 25.9 10.0 94 90-189 457-577 (697)
130 TIGR01950 SoxR redox-sensitive 24.3 2E+02 0.0043 23.1 5.2 54 120-173 57-110 (142)
131 PF13758 Prefoldin_3: Prefoldi 24.3 2.1E+02 0.0045 21.9 4.9 31 85-115 11-45 (99)
132 PF06751 EutB: Ethanolamine am 24.1 24 0.00051 33.6 -0.2 15 222-236 143-157 (444)
133 KOG4637 Adaptor for phosphoino 24.1 62 0.0014 30.6 2.5 41 33-75 367-412 (464)
134 TIGR02209 ftsL_broad cell divi 24.1 2.4E+02 0.0052 19.9 5.3 29 147-175 28-56 (85)
135 PF04521 Viral_P18: ssRNA posi 24.0 66 0.0014 25.3 2.2 21 19-39 5-25 (120)
136 PF15066 CAGE1: Cancer-associa 23.7 4.5E+02 0.0098 25.7 8.1 26 90-115 314-339 (527)
137 cd01282 HTH_MerR-like_sg3 Heli 23.1 2.7E+02 0.0059 21.1 5.6 50 120-170 56-108 (112)
138 KOG0183 20S proteasome, regula 23.0 46 0.001 29.0 1.3 17 41-57 4-20 (249)
139 PF06120 Phage_HK97_TLTM: Tail 22.9 4E+02 0.0087 24.4 7.4 8 166-173 136-143 (301)
140 PF10491 Nrf1_DNA-bind: NLS-bi 22.5 1E+02 0.0022 26.7 3.3 47 26-74 35-88 (214)
141 PTZ00108 DNA topoisomerase 2-l 22.4 6.7E+02 0.015 28.1 10.1 63 5-74 914-988 (1388)
142 PF14775 NYD-SP28_assoc: Sperm 22.4 2.6E+02 0.0057 19.0 5.4 44 122-174 14-57 (60)
143 PRK13824 replication initiatio 22.3 1.3E+02 0.0028 28.7 4.3 96 35-143 104-212 (404)
144 cd01108 HTH_CueR Helix-Turn-He 22.2 3.4E+02 0.0073 21.0 6.1 53 120-173 57-109 (127)
145 COG5068 ARG80 Regulator of arg 22.0 54 0.0012 31.2 1.7 60 8-74 18-77 (412)
146 PF10224 DUF2205: Predicted co 21.8 3.2E+02 0.007 19.9 6.5 28 148-175 35-62 (80)
147 PRK10227 DNA-binding transcrip 21.7 3.4E+02 0.0073 21.5 6.1 53 120-173 57-109 (135)
148 PF07106 TBPIP: Tat binding pr 21.6 4.4E+02 0.0096 21.4 12.3 53 90-144 113-165 (169)
149 PTZ00370 STEVOR; Provisional 21.5 1.6E+02 0.0035 26.8 4.5 43 8-73 26-68 (296)
150 KOG3004 Meiotic chromosome se 21.5 1.1E+02 0.0025 27.9 3.6 93 2-115 53-145 (305)
151 PF07407 Seadorna_VP6: Seadorn 21.3 2.6E+02 0.0057 26.0 5.8 35 117-163 25-59 (420)
152 PHA01750 hypothetical protein 21.0 3.1E+02 0.0067 19.3 7.2 20 151-170 50-69 (75)
153 KOG4360 Uncharacterized coiled 20.7 5.7E+02 0.012 25.4 8.2 85 88-172 161-262 (596)
154 PF09730 BicD: Microtubule-ass 20.6 7.9E+02 0.017 25.4 9.7 23 153-175 124-146 (717)
155 KOG0977 Nuclear envelope prote 20.5 5.2E+02 0.011 25.8 8.1 22 151-172 156-177 (546)
156 smart00415 HSF heat shock fact 20.3 65 0.0014 24.3 1.6 39 37-75 12-51 (105)
157 PF07058 Myosin_HC-like: Myosi 20.3 6E+02 0.013 23.5 7.8 72 90-173 11-82 (351)
158 PF14988 DUF4515: Domain of un 20.3 4.2E+02 0.0091 22.7 6.8 53 123-175 113-174 (206)
159 TIGR02168 SMC_prok_B chromosom 20.2 7E+02 0.015 26.3 9.8 12 48-59 140-151 (1179)
160 PF10112 Halogen_Hydrol: 5-bro 20.2 59 0.0013 27.4 1.5 16 62-77 136-151 (199)
161 PF04999 FtsL: Cell division p 20.2 2.9E+02 0.0064 20.1 5.2 31 145-175 37-67 (97)
162 PRK15002 redox-sensitivie tran 20.1 3.1E+02 0.0067 22.4 5.6 54 120-173 67-120 (154)
No 1
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=100.00 E-value=6.3e-39 Score=272.57 Aligned_cols=159 Identities=45% Similarity=0.627 Sum_probs=126.6
Q ss_pred CCccccceEEeCCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccccCCCchHHHHHHHhhhhcCCccC
Q 040075 1 MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAKGVRIP 80 (254)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~~~s~~~ileRY~~~~~~~~~ 80 (254)
|||+||+|++|+|.++|||||+|||+||||||+||||||||+||+|||||+|++|+||+++.+|..|++||.........
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK 80 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999766699999999987665433
Q ss_pred CCCCCcch---------------------hHHHHHhhhhhhhhHHHHh---hhcccCCCCcCCCCCH-HHHHHHHHHHHH
Q 040075 81 AGVSNHDS---------------------EAIYNELGRMRKETHNLEL---SLRRYTGDIDLNSVKL-EELTQLEHQLEC 135 (254)
Q Consensus 81 ~~~~~~~~---------------------e~l~~e~~kLkke~~~L~~---~~r~~~Ge~dL~~Ls~-~EL~~LE~~Le~ 135 (254)
........ +........++...+.+.. ..+++.|+ ++.+++. .+|..++.+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~l~~l~~~~~l~~~~~~l~~ 159 (195)
T KOG0014|consen 81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGE-DLQSLSSLNELNSLESQLES 159 (195)
T ss_pred ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhcc-ccccCCHHHHhcchhhHHHH
Confidence 21111110 0122233344445555543 36788999 9999999 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHH
Q 040075 136 SVKKVRVRKMEILRQQTD-NLLRKEK 160 (254)
Q Consensus 136 ~L~~VR~RK~~ll~~qi~-~lkkk~~ 160 (254)
++..+|..+...+..++. .++.+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (195)
T KOG0014|consen 160 SLHNSRSSKSKPLSDSNFQVLQEKEK 185 (195)
T ss_pred hhcCCCCCCCcCCcchhhhhhcccch
Confidence 999999999888877665 3333333
No 2
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.98 E-value=1.1e-33 Score=206.64 Aligned_cols=77 Identities=71% Similarity=1.031 Sum_probs=74.2
Q ss_pred CccccceEEeCCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccccCCCchHHHHHHHhhhhcCCccC
Q 040075 2 GRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAKGVRIP 80 (254)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~~~s~~~ileRY~~~~~~~~~ 80 (254)
||+||+|++|||..+|++||+||+.||||||.||||||||+||+|||||+|++|+|++ +++++||+||+..++.++|
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s--~s~~~vl~ry~~~~~~~~~ 77 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSS--PSMEKIIERYQKTSGSSLW 77 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecC--CCHHHHHHHHHhccccccC
Confidence 8999999999999999999999999999999999999999999999999999999998 5689999999999988776
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.96 E-value=4.9e-31 Score=195.44 Aligned_cols=77 Identities=49% Similarity=0.793 Sum_probs=72.4
Q ss_pred CccccceEEeCCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccccCCCchHHHHHHHhhhhcCCcc
Q 040075 2 GRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAKGVRI 79 (254)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~~~s~~~ileRY~~~~~~~~ 79 (254)
||+||+|++|+|..+|+|||+|||.||||||+||||||||+||+|||||+|+.++||+++. +..++++|...+....
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~-~~~~l~~~~~~~~~~~ 77 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSE-VEGVISRFEVLSALER 77 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHH-HHHHHHHHhhcCHhhh
Confidence 8999999999999999999999999999999999999999999999999999999999644 9999999998776543
No 4
>smart00432 MADS MADS domain.
Probab=99.96 E-value=2.2e-30 Score=179.21 Aligned_cols=59 Identities=76% Similarity=1.082 Sum_probs=58.1
Q ss_pred CccccceEEeCCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccccCC
Q 040075 2 GRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60 (254)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~ 60 (254)
||+||+|++|+|+.+|++||+||+.||+|||+||||||||+||+|||||+|++++||+|
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p 59 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence 89999999999999999999999999999999999999999999999999999999985
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.95 E-value=1.5e-29 Score=175.17 Aligned_cols=59 Identities=73% Similarity=1.082 Sum_probs=57.9
Q ss_pred CccccceEEeCCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccccCC
Q 040075 2 GRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60 (254)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~ 60 (254)
||+||+|++|+|...|++||+||+.||+|||.||||||||+||+|||||+|++++||+|
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~ 59 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence 89999999999999999999999999999999999999999999999999999999984
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.92 E-value=2e-27 Score=159.36 Aligned_cols=51 Identities=57% Similarity=0.890 Sum_probs=47.0
Q ss_pred EEeCCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccccC
Q 040075 9 ARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCS 59 (254)
Q Consensus 9 k~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s 59 (254)
|+|+|.+.|++||+||+.||||||.|||+||||+||+|||||+|+++.|+|
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 689999999999999999999999999999999999999999999999986
No 7
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.82 E-value=1.1e-19 Score=139.20 Aligned_cols=99 Identities=40% Similarity=0.637 Sum_probs=95.2
Q ss_pred hhhhcCCccCCCCCCcchhHHHHHhhhhhhhhHHHHhhhcccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 71 YQAAKGVRIPAGVSNHDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNSVKLEELTQLEHQLECSVKKVRVRKMEILRQ 150 (254)
Q Consensus 71 Y~~~~~~~~~~~~~~~~~e~l~~e~~kLkke~~~L~~~~r~~~Ge~dL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~ 150 (254)
|++.++.+.| +.+++.+..++.+|+.+++.|+..+|+++|+ ||++|+++||..||++|+.+|.+||+||.++|.+
T Consensus 1 Y~~~~~~~~~----~~~~e~~~~e~~~L~~~~~~L~~~~R~~~Ge-dL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~ 75 (100)
T PF01486_consen 1 YQKQSGTDLW----DSQHEELQQEIAKLRKENESLQKELRHLMGE-DLESLSLKELQQLEQQLESALKRVRSRKDQLLME 75 (100)
T ss_pred CCcccCCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cccccchHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 7778888888 8889999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 151 QTDNLLRKEKMLEEENEQIFSLLK 174 (254)
Q Consensus 151 qi~~lkkk~~~l~een~~L~~~l~ 174 (254)
+|+.+++|++.+.++|..|+.++.
T Consensus 76 ~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 76 QIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999874
No 8
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.75 E-value=2.1e-19 Score=157.99 Aligned_cols=77 Identities=36% Similarity=0.506 Sum_probs=67.2
Q ss_pred CccccceEEeCCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccccCCC-------chHHHHHHHhhhh
Q 040075 2 GRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSES-------TSIEEIIRRYQAA 74 (254)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~~-------~s~~~ileRY~~~ 74 (254)
||.||+|++|||+..|.|||||||.||||||+|||||.|.+|-|+|.|.+|-+|.|+.|. ..-+.+|....+.
T Consensus 63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s~~Gk~lIq~cLn~ 142 (338)
T KOG0015|consen 63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITSDEGKALIQACLNA 142 (338)
T ss_pred ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccchhhHHHHHHHhcC
Confidence 799999999999999999999999999999999999999999999999999999999863 2336666666555
Q ss_pred cCCc
Q 040075 75 KGVR 78 (254)
Q Consensus 75 ~~~~ 78 (254)
+...
T Consensus 143 pd~~ 146 (338)
T KOG0015|consen 143 PDTP 146 (338)
T ss_pred CCCC
Confidence 5443
No 9
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.39 E-value=9.1e-14 Score=127.63 Aligned_cols=61 Identities=43% Similarity=0.569 Sum_probs=59.3
Q ss_pred CCccccceEEeCCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccccCCC
Q 040075 1 MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSES 61 (254)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~~ 61 (254)
|||+||.|..|+|+++|.|||+||+.||+|||.||+||.|.+|.++|.|.+|+++.|+.|.
T Consensus 81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~ 141 (412)
T COG5068 81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPK 141 (412)
T ss_pred cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCc
Confidence 7899999999999999999999999999999999999999999999999999999999953
No 10
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=91.11 E-value=2.4 Score=30.39 Aligned_cols=49 Identities=31% Similarity=0.456 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 121 VKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLK 174 (254)
Q Consensus 121 Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l~ 174 (254)
++++.|..||..+..++..|.. |..+++.|+.+...|.++|..|.....
T Consensus 1 M~~E~l~~LE~ki~~aveti~~-----Lq~e~eeLke~n~~L~~e~~~L~~en~ 49 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIAL-----LQMENEELKEKNNELKEENEELKEENE 49 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4788999999999999999865 566667888886666666666666553
No 11
>PHA03155 hypothetical protein; Provisional
Probab=81.79 E-value=14 Score=28.73 Aligned_cols=60 Identities=17% Similarity=0.174 Sum_probs=48.0
Q ss_pred CcchhHHHHHhhhhhhhhHHHHhhhcccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 85 NHDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNSVKLEELTQLEHQLECSVKKVRVRKM 145 (254)
Q Consensus 85 ~~~~e~l~~e~~kLkke~~~L~~~~r~~~Ge~dL~~Ls~~EL~~LE~~Le~~L~~VR~RK~ 145 (254)
+...|.|..++.+|+-+|..|++.+++-.+. +=.-|+..+=..+-...-.+|...-.+|.
T Consensus 7 ~~tvEeLaaeL~kL~~ENK~LKkkl~~~~~p-~d~~LT~~qKea~I~s~v~~Lt~~A~~KI 66 (115)
T PHA03155 7 CADVEELEKELQKLKIENKALKKKLLQHGNP-EDELLTPAQKDAIINSLVNKLTKKAEEKI 66 (115)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHccCCC-CccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678999999999999999999998775554 44668988888888887777777666554
No 12
>PRK04098 sec-independent translocase; Provisional
Probab=81.37 E-value=0.43 Score=39.40 Aligned_cols=30 Identities=13% Similarity=0.246 Sum_probs=23.0
Q ss_pred cEEEEEecCCCCcccccCCCchHHHHHHHhhhhc
Q 040075 42 EIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAK 75 (254)
Q Consensus 42 ~valIifS~~gk~~e~~s~~~s~~~ileRY~~~~ 75 (254)
=||||||+| +|++++.. ++-..+..|++..
T Consensus 14 vVaLlvfGP-~KLP~~~r---~lGk~ir~~K~~~ 43 (158)
T PRK04098 14 VVAIIFLGP-DKLPQAMV---DIAKFFKAVKKTI 43 (158)
T ss_pred HHHHhhcCc-hHHHHHHH---HHHHHHHHHHHHH
Confidence 378999999 69998874 5777777777654
No 13
>PRK10884 SH3 domain-containing protein; Provisional
Probab=79.78 E-value=21 Score=30.78 Aligned_cols=75 Identities=9% Similarity=0.101 Sum_probs=31.1
Q ss_pred HHHHhhhhhhhhHHHHhhhcccCCCCcCCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 91 IYNELGRMRKETHNLELSLRRYTGDIDLNSVKLEELTQLEHQLECSVKKVR--VRKMEILRQQTDNLLRKEKMLEEENEQ 168 (254)
Q Consensus 91 l~~e~~kLkke~~~L~~~~r~~~Ge~dL~~Ls~~EL~~LE~~Le~~L~~VR--~RK~~ll~~qi~~lkkk~~~l~een~~ 168 (254)
....+.+++++++.++.++....++ .+ ....++.+.+..+-..+. ...++-|.+++..++.+...|+.+|..
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~--~~----~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNT--WN----QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544443332 11 233333333333222222 222333344444444444444444444
Q ss_pred HHH
Q 040075 169 IFS 171 (254)
Q Consensus 169 L~~ 171 (254)
+..
T Consensus 165 ~~~ 167 (206)
T PRK10884 165 KQR 167 (206)
T ss_pred HHH
Confidence 443
No 14
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=78.83 E-value=3.5 Score=31.93 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 040075 153 DNLLRKEKMLEEENEQIFSLLK 174 (254)
Q Consensus 153 ~~lkkk~~~l~een~~L~~~l~ 174 (254)
..++++.+.|+|||+.|+.+++
T Consensus 75 ~rlkkk~~~LeEENNlLklKie 96 (108)
T cd07429 75 LRLKKKNQQLEEENNLLKLKIE 96 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888999999999999884
No 15
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=78.61 E-value=4.1 Score=28.10 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=24.9
Q ss_pred ccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 040075 111 RYTGDIDLNSVKLEELTQLEHQLECSVKKVRV 142 (254)
Q Consensus 111 ~~~Ge~dL~~Ls~~EL~~LE~~Le~~L~~VR~ 142 (254)
+..|+ ||+.||++||..--..|+.-+.+++.
T Consensus 12 ~~ig~-dLs~lSv~EL~~RIa~L~aEI~R~~~ 42 (59)
T PF06698_consen 12 HEIGE-DLSLLSVEELEERIALLEAEIARLEA 42 (59)
T ss_pred cccCC-CchhcCHHHHHHHHHHHHHHHHHHHH
Confidence 56789 99999999999877777766666554
No 16
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=78.10 E-value=5.9 Score=27.18 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 146 EILRQQTDNLLRKEKMLEEENEQIFSL 172 (254)
Q Consensus 146 ~ll~~qi~~lkkk~~~l~een~~L~~~ 172 (254)
++|.++|..|..+...|+.||..|+..
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677777777777777777766644
No 17
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=77.85 E-value=12 Score=29.01 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 132 QLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFS 171 (254)
Q Consensus 132 ~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~ 171 (254)
.+|.++.-|...-+-...++++.||.+++.|++.|..|..
T Consensus 49 KIeQAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~ 88 (123)
T KOG4797|consen 49 KIEQAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALER 88 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444333333345555555555555555554443
No 18
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=77.19 E-value=20 Score=27.83 Aligned_cols=48 Identities=25% Similarity=0.422 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040075 123 LEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKD 175 (254)
Q Consensus 123 ~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 175 (254)
++.+.+||++|...+..+.+=|.++ ..+-.....|+-||..|+..+.+
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~~-----~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQL-----AELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888877777666644433 35555566666677777777753
No 19
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=75.08 E-value=24 Score=27.16 Aligned_cols=47 Identities=30% Similarity=0.409 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 123 LEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLK 174 (254)
Q Consensus 123 ~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l~ 174 (254)
++.+..||++|...+..|.+=|.++ ..+-..-..|.-||..|+..+.
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~~~-----~~l~EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKKQL-----QELLEENARLRIENEHLRERLE 53 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777765555554433222 2344444444445555555553
No 20
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=74.96 E-value=0.35 Score=26.94 Aligned_cols=13 Identities=31% Similarity=0.536 Sum_probs=10.2
Q ss_pred EEEEecCCCCccc
Q 040075 44 GLIIFSCTGKLTE 56 (254)
Q Consensus 44 alIifS~~gk~~e 56 (254)
.+.+|||.|+++.
T Consensus 4 ~~t~FSp~Grl~Q 16 (23)
T PF10584_consen 4 SITTFSPDGRLFQ 16 (23)
T ss_dssp STTSBBTTSSBHH
T ss_pred CceeECCCCeEEe
Confidence 3457999999974
No 21
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.83 E-value=7.1 Score=33.48 Aligned_cols=139 Identities=19% Similarity=0.315 Sum_probs=76.9
Q ss_pred eEEeCCCCCcceeccc--------cccchhhhhhhhhccCCCcEEEEEecCCCCcccccCCCchHHHHHHHhhhhcCCcc
Q 040075 8 IARIESRTNRQVTFSK--------RRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAKGVRI 79 (254)
Q Consensus 8 ik~Ien~~~RqvTfsK--------Rr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~~~s~~~ileRY~~~~~~~~ 79 (254)
+.+|.-.++-..|||- |-+| |..|| |.-.+.|+--.|.- +++|=+||.+.-|...
T Consensus 33 L~klp~~~n~k~tYs~d~y~Fh~l~~dg-------~tylc------vadds~gR~ipfaF----Le~Ik~~F~k~YG~~a 95 (217)
T KOG0859|consen 33 LQKLPSSSNSKFTYSCDGYTFHYLVEDG-------LTYLC------VADDSAGRQIPFAF----LERIKEDFKKRYGGGA 95 (217)
T ss_pred HHhCCCCCCCceEEecCCeEEEEEEeCC-------eEEEE------EEeccccccccHHH----HHHHHHHHHHHhccch
Confidence 3456666777888884 4455 34444 33456688766654 7888888887765542
Q ss_pred CCCCCCcchhHHHHHhhhhhhhhHHHHhhhcccCCCCcCCCCC--HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 040075 80 PAGVSNHDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNSVK--LEELTQLEHQLECSVKKVRVR--KMEILRQQTDNL 155 (254)
Q Consensus 80 ~~~~~~~~~e~l~~e~~kLkke~~~L~~~~r~~~Ge~dL~~Ls--~~EL~~LE~~Le~~L~~VR~R--K~~ll~~qi~~l 155 (254)
. ....-.|..|..+ .|...+...+..|+++.|+ -.+..++..-+-+-+.+|.+| |-++|.+.+++|
T Consensus 96 ~----ta~AysmN~EFs~------vL~qqm~y~s~~p~id~lskvkaqv~evk~vM~eNIekvldRGekiELLVdKTenl 165 (217)
T KOG0859|consen 96 H----TAVAYSMNKEFSS------VLKQQMQYCSEHPEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENL 165 (217)
T ss_pred h----HHHHhHhHHHHHH------HHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeeechhhhh
Confidence 2 1111133333332 2333344444443444433 123333333344444555554 567778888888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 040075 156 LRKEKMLEEENEQIFSLL 173 (254)
Q Consensus 156 kkk~~~l~een~~L~~~l 173 (254)
+.+-.....+-+.|++++
T Consensus 166 ~~~s~~fr~q~r~~~r~m 183 (217)
T KOG0859|consen 166 RSKSFDFRTQGRKLRRKM 183 (217)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 887777777777777665
No 22
>PHA03162 hypothetical protein; Provisional
Probab=74.09 E-value=35 Score=27.28 Aligned_cols=62 Identities=15% Similarity=0.205 Sum_probs=46.9
Q ss_pred CcchhHHHHHhhhhhhhhHHHHhhhcccCCCCcC---CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 85 NHDSEAIYNELGRMRKETHNLELSLRRYTGDIDL---NSVKLEELTQLEHQLECSVKKVRVRKME 146 (254)
Q Consensus 85 ~~~~e~l~~e~~kLkke~~~L~~~~r~~~Ge~dL---~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ 146 (254)
....|.|..++.+|+-||..|++.+++-.|.++| ..|+..+=..+-...-..|...-.+|.+
T Consensus 12 ~~tmEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s~v~~Lts~A~kKIe 76 (135)
T PHA03162 12 QPTMEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGAATAALTRQAAKKIE 76 (135)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4558899999999999999999999876665122 2488888887777777777776665543
No 23
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=73.79 E-value=16 Score=28.76 Aligned_cols=60 Identities=18% Similarity=0.239 Sum_probs=44.5
Q ss_pred cchhHHHHHhhhhhhhhHHHHhhhcccCC----CCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 86 HDSEAIYNELGRMRKETHNLELSLRRYTG----DIDLNSVKLEELTQLEHQLECSVKKVRVRKME 146 (254)
Q Consensus 86 ~~~e~l~~e~~kLkke~~~L~~~~r~~~G----e~dL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ 146 (254)
...|.|..++.+|+-||..|++.+++-.| . +=.-|+..+=..+-...-.+|...-.+|.+
T Consensus 3 ~t~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p-~~~~LTp~qKe~~I~s~~~~Lss~A~~KIe 66 (118)
T PF05812_consen 3 MTMEELAAELQKLQMENKALKKKLRQSVGPGPSP-DDEVLTPAQKEAMITSAVSKLSSQASKKIE 66 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT---S-T-T--B--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCC-CccccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999998776 3 556689988888888877777776665543
No 24
>PRK01919 tatB sec-independent translocase; Provisional
Probab=66.17 E-value=2.1 Score=35.71 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=19.3
Q ss_pred EEEEEecCCCCcccccCCCchHHHHHHHhhhh
Q 040075 43 IGLIIFSCTGKLTEFCSESTSIEEIIRRYQAA 74 (254)
Q Consensus 43 valIifS~~gk~~e~~s~~~s~~~ileRY~~~ 74 (254)
||||||+| .|+++..- ++-..+.+++..
T Consensus 15 VALiV~GP-ekLP~~aR---tlGk~i~k~Rr~ 42 (169)
T PRK01919 15 VALVVIGP-ERLPRVAR---TAGALFGRAQRY 42 (169)
T ss_pred HHHheeCc-hHhHHHHH---HHHHHHHHHHHH
Confidence 78999998 78887764 455555555443
No 25
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=65.32 E-value=1e+02 Score=28.28 Aligned_cols=59 Identities=12% Similarity=0.248 Sum_probs=40.8
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040075 117 DLNSVKLEELTQLEHQLECSVKKVRVRKMEIL--RQQTDNLLRKEKMLEEENEQIFSLLKD 175 (254)
Q Consensus 117 dL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll--~~qi~~lkkk~~~l~een~~L~~~l~~ 175 (254)
++++++.++|..+...|......|..++.++- .++...+..++....+.-..+...+.+
T Consensus 197 e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ 257 (312)
T smart00787 197 ELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAE 257 (312)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68889999999999999888888877776654 234555555555555555555555543
No 26
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=65.21 E-value=79 Score=28.96 Aligned_cols=59 Identities=22% Similarity=0.423 Sum_probs=44.7
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040075 117 DLNSVKLEELTQLEHQLECSVKKVRVRKMEIL--RQQTDNLLRKEKMLEEENEQIFSLLKD 175 (254)
Q Consensus 117 dL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll--~~qi~~lkkk~~~l~een~~L~~~l~~ 175 (254)
.++.++.++|..+...|...-..|..+|..+- ..+...++.++..+.++...+...+.+
T Consensus 202 e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e 262 (325)
T PF08317_consen 202 EIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAE 262 (325)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58889999999999999999998888777665 345666666666666666666666654
No 27
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=62.99 E-value=43 Score=28.35 Aligned_cols=13 Identities=15% Similarity=0.181 Sum_probs=7.4
Q ss_pred hHHHHHHHhhhhc
Q 040075 63 SIEEIIRRYQAAK 75 (254)
Q Consensus 63 s~~~ileRY~~~~ 75 (254)
....++++|+...
T Consensus 92 e~~~~l~~y~~l~ 104 (189)
T PF10211_consen 92 EYRMTLDAYQTLY 104 (189)
T ss_pred HHHHHHHHHHHHH
Confidence 4556666665543
No 28
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=62.13 E-value=60 Score=32.55 Aligned_cols=83 Identities=18% Similarity=0.273 Sum_probs=47.9
Q ss_pred HHHHHhhhhhhhhHHHHhhhcccCCCCcCCCCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 040075 90 AIYNELGRMRKETHNLELSLRRYTGDIDLNSVKLEELTQLEHQLECSVKKVR-----VRKMEILRQQTDNLLRKEKMLEE 164 (254)
Q Consensus 90 ~l~~e~~kLkke~~~L~~~~r~~~Ge~dL~~Ls~~EL~~LE~~Le~~L~~VR-----~RK~~ll~~qi~~lkkk~~~l~e 164 (254)
....++.++.+.+++|+.+++.+..+ +..+. +++..|+..|+..-..++ .|+.+.+...|+.|+++...-..
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~--~ee~k-~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~ 495 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRE--LEELK-REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKK 495 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666554 11111 344555555555554443 34455566677777777666666
Q ss_pred HHHHHHHHHHh
Q 040075 165 ENEQIFSLLKD 175 (254)
Q Consensus 165 en~~L~~~l~~ 175 (254)
.-..|..++..
T Consensus 496 ~ve~L~~~l~~ 506 (652)
T COG2433 496 RVEELERKLAE 506 (652)
T ss_pred HHHHHHHHHHH
Confidence 66667766654
No 29
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=61.94 E-value=45 Score=27.60 Aligned_cols=43 Identities=21% Similarity=0.316 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 040075 122 KLEELTQLEHQLECSVKKVRVR---KMEILRQQTDNLLRKEKMLEE 164 (254)
Q Consensus 122 s~~EL~~LE~~Le~~L~~VR~R---K~~ll~~qi~~lkkk~~~l~e 164 (254)
+..||..|-++++.+...+|++ |-.+|.+||..|+.+-+.+.+
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA~~ile 73 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQARKILE 73 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999988876 556667777777776555544
No 30
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=59.46 E-value=68 Score=24.68 Aligned_cols=30 Identities=20% Similarity=0.168 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040075 146 EILRQQTDNLLRKEKMLEEENEQIFSLLKD 175 (254)
Q Consensus 146 ~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 175 (254)
..+..++..|++....|.|||..|+-+-..
T Consensus 18 ~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~ 47 (107)
T PF06156_consen 18 GQLLEELEELKKQLQELLEENARLRIENEH 47 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999987654
No 31
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=57.43 E-value=44 Score=27.42 Aligned_cols=55 Identities=22% Similarity=0.317 Sum_probs=30.7
Q ss_pred HHHHHhhhhhhhhHHHHhhhcccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 90 AIYNELGRMRKETHNLELSLRRYTGDIDLNSVKLEELTQLEHQLECSVKKVRVRKMEILR 149 (254)
Q Consensus 90 ~l~~e~~kLkke~~~L~~~~r~~~Ge~dL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~ 149 (254)
.+..++..++.++..|+.++..+. ..++.+||...-..|+.-+..+.+|-..+-.
T Consensus 83 ~L~~el~~l~~~~k~l~~eL~~L~-----~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 83 ELREELAELKKEVKSLEAELASLS-----SEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444332 3457777777777777777776666655543
No 32
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=57.36 E-value=70 Score=24.79 Aligned_cols=48 Identities=23% Similarity=0.349 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040075 123 LEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKD 175 (254)
Q Consensus 123 ~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 175 (254)
++.+.+||++|-..++.|-.-|.++ ..+-.....|.=||..|+..+.+
T Consensus 7 Fd~v~~le~~l~~l~~el~~lK~~l-----~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 7 FDQVDNLEEQLGVLLAELGGLKQHL-----GSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhHHHHhhHHHHHHHhCC
Confidence 4677888888877666665544333 24444444555566666666644
No 33
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=57.23 E-value=58 Score=22.15 Aligned_cols=36 Identities=31% Similarity=0.447 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040075 136 SVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKD 175 (254)
Q Consensus 136 ~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 175 (254)
+-...|.||...+ +.|..++..|..+|..|...+..
T Consensus 16 AAr~~R~RKk~~~----~~Le~~~~~L~~en~~L~~~~~~ 51 (64)
T PF00170_consen 16 AARRSRQRKKQYI----EELEEKVEELESENEELKKELEQ 51 (64)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677776665 58888888888899888887754
No 34
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=55.59 E-value=23 Score=27.39 Aligned_cols=34 Identities=32% Similarity=0.472 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 139 KVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLL 173 (254)
Q Consensus 139 ~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l 173 (254)
.||+- .+.|.+||..|..+...|++||..|+.-.
T Consensus 64 AVREE-Ve~Lk~qI~eL~er~~~Le~EN~lLk~~~ 97 (123)
T KOG4797|consen 64 AVREE-VEVLKEQIRELEERNSALERENSLLKTLA 97 (123)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45543 46789999999999999999998887654
No 35
>smart00338 BRLZ basic region leucin zipper.
Probab=55.26 E-value=64 Score=21.98 Aligned_cols=37 Identities=30% Similarity=0.394 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040075 136 SVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDN 176 (254)
Q Consensus 136 ~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~ 176 (254)
+-...|.||...+ ..|..++..|+.+|..|...+...
T Consensus 16 aA~~~R~rKk~~~----~~Le~~~~~L~~en~~L~~~~~~l 52 (65)
T smart00338 16 AARRSRERKKAEI----EELERKVEQLEAENERLKKEIERL 52 (65)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666554 588999999999999999888653
No 36
>PRK01371 sec-independent translocase; Provisional
Probab=55.07 E-value=4.7 Score=32.59 Aligned_cols=16 Identities=19% Similarity=0.457 Sum_probs=12.4
Q ss_pred EEEEEecCCCCcccccC
Q 040075 43 IGLIIFSCTGKLTEFCS 59 (254)
Q Consensus 43 valIifS~~gk~~e~~s 59 (254)
|+||||+| .|++++..
T Consensus 15 VallvfGP-eKLP~~ar 30 (137)
T PRK01371 15 LAVLVFGP-DKLPKAAR 30 (137)
T ss_pred HHhheeCc-hHHHHHHH
Confidence 67889988 78877764
No 37
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=54.82 E-value=1e+02 Score=24.25 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 147 ILRQQTDNLLRKEKMLEEENEQIFSLLK 174 (254)
Q Consensus 147 ll~~qi~~lkkk~~~l~een~~L~~~l~ 174 (254)
.|..++..++++...|.+.|+.|...|.
T Consensus 102 ~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 102 QLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567788888888888888888887763
No 38
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=53.19 E-value=77 Score=22.24 Aligned_cols=45 Identities=27% Similarity=0.310 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 125 ELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLK 174 (254)
Q Consensus 125 EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l~ 174 (254)
+|..|+..++.-+.... -+..+-..|+..+..+..|+..|..++.
T Consensus 1 ~L~~Le~kle~Li~~~~-----~L~~EN~~Lr~q~~~~~~ER~~L~ekne 45 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLE-----RLKSENRLLRAQEKTWREERAQLLEKNE 45 (65)
T ss_pred CHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777765543 3455556677777777777777777764
No 39
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=52.97 E-value=1.2e+02 Score=25.16 Aligned_cols=57 Identities=21% Similarity=0.338 Sum_probs=37.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 118 LNSVKLEELTQLEHQLECSVKKVRV--RKMEILRQQTDNLLRKEKMLEEENEQIFSLLK 174 (254)
Q Consensus 118 L~~Ls~~EL~~LE~~Le~~L~~VR~--RK~~ll~~qi~~lkkk~~~l~een~~L~~~l~ 174 (254)
...|++++...+-+.+......... .-.+-+..++..|+.+...|+.+|..|...+.
T Consensus 77 ~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 77 AGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred cccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999888865332221 12334556677777777777777777766653
No 40
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.78 E-value=83 Score=22.48 Aligned_cols=35 Identities=20% Similarity=0.450 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 121 VKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEK 160 (254)
Q Consensus 121 Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~ 160 (254)
+|++=|..||..+..++..|. ++.=+|+.|+.|..
T Consensus 1 MSlEv~ekLE~KiqqAvdTI~-----LLQmEieELKEknn 35 (79)
T COG3074 1 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNN 35 (79)
T ss_pred CchHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhh
Confidence 467777888888877777653 34444455544433
No 41
>PRK10884 SH3 domain-containing protein; Provisional
Probab=51.76 E-value=1e+02 Score=26.47 Aligned_cols=23 Identities=22% Similarity=0.063 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 040075 153 DNLLRKEKMLEEENEQIFSLLKD 175 (254)
Q Consensus 153 ~~lkkk~~~l~een~~L~~~l~~ 175 (254)
.........|+++|..|..++..
T Consensus 128 ~~~~~~~~~L~~~n~~L~~~l~~ 150 (206)
T PRK10884 128 AQSDSVINGLKEENQKLKNQLIV 150 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444466666666665543
No 42
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=51.36 E-value=87 Score=27.28 Aligned_cols=53 Identities=25% Similarity=0.295 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 121 VKLEELTQLEHQLECSVKKVRVRKME--ILRQQTDNLLRKEKMLEEENEQIFSLL 173 (254)
Q Consensus 121 Ls~~EL~~LE~~Le~~L~~VR~RK~~--ll~~qi~~lkkk~~~l~een~~L~~~l 173 (254)
-..+|+..|+..++..-+..-....+ -+..|.+.+.+.-..|.|+|..|+.++
T Consensus 155 ~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 155 KLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 34567777777777665554433322 234455555555555666666665554
No 43
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=50.41 E-value=1.8e+02 Score=28.17 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=29.2
Q ss_pred cchhhhhhhhhccCCCcEEEEEecCCCCcccccCCCchHHHHHHHhhhh
Q 040075 26 GGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAA 74 (254)
Q Consensus 26 ~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~~~s~~~ileRY~~~ 74 (254)
++|+|+-. |.+- .-+-+++|+++|++..|.+ +++||+.|-..
T Consensus 285 ~~L~k~~~-L~~~--~~~Nm~~~d~~g~~~~~~~----~~~Il~~f~~~ 326 (439)
T PHA02592 285 EKIMKDFG-LIER--VSQNITVINENGKLKVYEN----AEDLIRDFVEI 326 (439)
T ss_pred HHHHHhcC-chhe--eeeeEEEEecCCeeeecCC----HHHHHHHHHHH
Confidence 36665532 3221 2367888999999999855 89999998654
No 44
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=47.08 E-value=89 Score=26.34 Aligned_cols=63 Identities=16% Similarity=0.274 Sum_probs=39.8
Q ss_pred CcchhHHHHHhhhhhhhhHHHHhhhcccCCCC-cC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 85 NHDSEAIYNELGRMRKETHNLELSLRRYTGDI-DL-NSVKLEELTQLEHQLECSVKKVRVRKMEI 147 (254)
Q Consensus 85 ~~~~e~l~~e~~kLkke~~~L~~~~r~~~Ge~-dL-~~Ls~~EL~~LE~~Le~~L~~VR~RK~~l 147 (254)
+.+.+.|..++.++.++...|+..++.+..|+ .| +.|+++|++.-.+.|..-.+.-|+|-..+
T Consensus 78 ~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~ 142 (201)
T KOG4603|consen 78 DEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNI 142 (201)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666777777777777776666555431 12 34778888877777777766666664433
No 45
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=46.95 E-value=1.7e+02 Score=29.09 Aligned_cols=29 Identities=21% Similarity=0.137 Sum_probs=14.8
Q ss_pred hhhhhhccCCCcEEEEEecC-CC------CcccccCC
Q 040075 31 KARELSVLCDAEIGLIIFSC-TG------KLTEFCSE 60 (254)
Q Consensus 31 KA~ELSvLCda~valIifS~-~g------k~~e~~s~ 60 (254)
+|+.|--- |.+--..+|.. .| .+|.|+.|
T Consensus 78 ~ayyLPk~-~~e~YqfcYv~~~g~V~G~S~pFqf~~~ 113 (546)
T PF07888_consen 78 QAYYLPKD-DDEFYQFCYVDQKGEVRGASTPFQFRAP 113 (546)
T ss_pred CcccCCCC-CCCeEEEEEECCCccEEEecCCcccCCC
Confidence 36666653 23444455543 34 34667665
No 46
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=44.86 E-value=89 Score=20.55 Aligned_cols=36 Identities=31% Similarity=0.391 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040075 136 SVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKD 175 (254)
Q Consensus 136 ~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 175 (254)
+..+-|.||..-+ ..+..++..|..+|..|...+..
T Consensus 15 AA~r~R~rkk~~~----~~le~~~~~L~~en~~L~~~i~~ 50 (54)
T PF07716_consen 15 AARRSRQRKKQRE----EELEQEVQELEEENEQLRQEIAQ 50 (54)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555444 58888899999999999887753
No 47
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=44.30 E-value=81 Score=23.34 Aligned_cols=37 Identities=27% Similarity=0.392 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 119 NSVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENE 167 (254)
Q Consensus 119 ~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~ 167 (254)
..||.++-..||+.+. .+++++.+..++.+.|..||.
T Consensus 31 ~eLs~e~R~~lE~E~~------------~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 31 RELSPEARRSLEKELN------------ELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred cCCChHHHHHHHHHHH------------HHHHHhhccHHHHHHHHHhhh
Confidence 3467888888885543 345556677777777777774
No 48
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=43.91 E-value=42 Score=32.43 Aligned_cols=57 Identities=23% Similarity=0.221 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040075 120 SVKLEELTQLEHQLECSVKKVRVRKMEILRQ-----------------------QTDNLLRKEKMLEEENEQIFSLLKDN 176 (254)
Q Consensus 120 ~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~-----------------------qi~~lkkk~~~l~een~~L~~~l~~~ 176 (254)
++++-+..-|-+.=|..|++||.+-...... |-..|++|+..|+..|..|..+|...
T Consensus 233 G~slPs~lPLTKaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~kl 312 (472)
T KOG0709|consen 233 GYSLPSKLPLTKAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKL 312 (472)
T ss_pred cCcCcccCCchHHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHH
Confidence 4455566666666677777776543332222 22457777777888888877777654
No 49
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=43.86 E-value=2.5e+02 Score=29.83 Aligned_cols=87 Identities=18% Similarity=0.285 Sum_probs=49.5
Q ss_pred hhHHHHHhhhhhhhhHHHHhhhccc------CCCCcCCCCCHHHHHHHHH---HHHHHHHHHHHHH------HHHHHHHH
Q 040075 88 SEAIYNELGRMRKETHNLELSLRRY------TGDIDLNSVKLEELTQLEH---QLECSVKKVRVRK------MEILRQQT 152 (254)
Q Consensus 88 ~e~l~~e~~kLkke~~~L~~~~r~~------~Ge~dL~~Ls~~EL~~LE~---~Le~~L~~VR~RK------~~ll~~qi 152 (254)
.+.++.+++.++++++.|+..+.-+ .|. |.-..|--++.+||+ .|-.+|-++|+-- .+.+..++
T Consensus 327 aesLQ~eve~lkEr~deletdlEILKaEmeekG~-~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kel 405 (1243)
T KOG0971|consen 327 AESLQQEVEALKERVDELETDLEILKAEMEEKGS-DGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKEL 405 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 3578888888998888887654322 254 555555555555555 4777777766521 12233344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 040075 153 DNLLRKEKMLEEENEQIFSLLKD 175 (254)
Q Consensus 153 ~~lkkk~~~l~een~~L~~~l~~ 175 (254)
+..+.....|......|..++.+
T Consensus 406 E~k~sE~~eL~r~kE~Lsr~~d~ 428 (1243)
T KOG0971|consen 406 EKKNSELEELRRQKERLSRELDQ 428 (1243)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555555543
No 50
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=43.82 E-value=1.8e+02 Score=24.85 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 145 MEILRQQTDNLLRKEKMLEEENEQIFSLL 173 (254)
Q Consensus 145 ~~ll~~qi~~lkkk~~~l~een~~L~~~l 173 (254)
...+.++++.|+.-.+.++++|+.|...-
T Consensus 62 aK~l~eEledLk~~~~~lEE~~~~L~aq~ 90 (193)
T PF14662_consen 62 AKALEEELEDLKTLAKSLEEENRSLLAQA 90 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555666666666666665555443
No 51
>PF09158 MotCF: Bacteriophage T4 MotA, C-terminal; InterPro: IPR015241 Transcription factor MotA is required for the activation of middle promoters in Bacteriophage T4, in addition to phage T4 co-activator AsiA, and sigma-70-containing Escherichia coli RNA polymerase. Phage T4 middle promoters have the sigma70 -10 DNA element, but not the -35 element; instead, they have a MotA box at -30 to which the transcription factor MotA binds []. MotA and AsiA interact with the C-terminal of sigma70 (region 4), which normally binds the -35 element and the beta-flap, thereby diverting sigma70 away from host promoters that require -35 element-binding to phage T4 middle promoters. Transcription factor MotA has two domains: an N-terminal domain required for binding to sigma70, and a C-terminal domain required for binding to the -30 MotA box element in the phage T4 middle promoter. This entry represents the C-terminal domain of MotA factors, which adopts a compact alpha/beta structure comprising three alpha-helices and six beta-strands in the order: alpha1-beta1-beta2-beta3-beta4-alpha2-beta5-beta6-alpha3. In this architecture, the domain's hydrophobic core is at the sheet-helix interface, and the second surface of the beta-sheet is completely exposed. It contains a DNA-binding motif, with a consensus sequence containing nine base pairs (5'-TTTGCTTTA-3'), that appears to bind to various mot boxes, allowing access to the minor groove towards the 5'-end of this sequence and the major groove towards the 3'-end [].; PDB: 1KAF_B.
Probab=43.40 E-value=8.9 Score=29.38 Aligned_cols=53 Identities=30% Similarity=0.509 Sum_probs=37.0
Q ss_pred ccceEEe-CCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccccCCCchHHHHHHHhhhh
Q 040075 5 KIEIARI-ESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAA 74 (254)
Q Consensus 5 Ki~ik~I-en~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~~~s~~~ileRY~~~ 74 (254)
+|++|.+ +|.+|=.|+|.||-.|+-+ +=....|.+--|+. .-.+++++.|...
T Consensus 19 ~ie~K~~~~~RSN~~i~f~KRt~Girq---------------fEi~n~G~~RI~gY--k~se~~~~~f~sl 72 (103)
T PF09158_consen 19 KIEVKEIVIDRSNYEIRFKKRTKGIRQ---------------FEIRNKGEFRIFGY--KMSEEIIKKFTSL 72 (103)
T ss_dssp T--EEEEEEETTEEEEEEEEEETTEEE---------------EEEETTSEEEEEEE--S--HHHHHHHHHT
T ss_pred ceeeeeeEeeccceEEeeecccCceeE---------------EEEecCCcEEEEEE--cCCHHHHHHHHhc
Confidence 5788887 8899999999999999632 33357787766666 4567888888765
No 52
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=43.37 E-value=2.1e+02 Score=24.47 Aligned_cols=49 Identities=22% Similarity=0.398 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 123 LEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSL 172 (254)
Q Consensus 123 ~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~ 172 (254)
+++|..+-..|+..-..+-+.-.++ ..+...|-.++..|+++|..|...
T Consensus 69 ledLk~~~~~lEE~~~~L~aq~rql-EkE~q~L~~~i~~Lqeen~kl~~e 117 (193)
T PF14662_consen 69 LEDLKTLAKSLEEENRSLLAQARQL-EKEQQSLVAEIETLQEENGKLLAE 117 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHh
Confidence 5566666666666555554443332 333444455555555555554443
No 53
>PF14645 Chibby: Chibby family
Probab=43.25 E-value=41 Score=26.31 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 040075 152 TDNLLRKEKMLEEENEQIFSLLK 174 (254)
Q Consensus 152 i~~lkkk~~~l~een~~L~~~l~ 174 (254)
...++++.+.|+|||+.|+.+++
T Consensus 73 ~~~l~~~n~~L~EENN~Lklk~e 95 (116)
T PF14645_consen 73 NQRLRKENQQLEEENNLLKLKIE 95 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888888888888763
No 54
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=43.16 E-value=89 Score=20.91 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 120 SVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEE 165 (254)
Q Consensus 120 ~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~ee 165 (254)
|+|++|+.++-..-+..-....... +++..+++.+.++...|..-
T Consensus 14 GfsL~eI~~~l~l~~~~~~~~~~~~-~~l~~~~~~i~~~i~~L~~~ 58 (65)
T PF09278_consen 14 GFSLEEIRELLELYDQGDPPCADRR-ALLEEKLEEIEEQIAELQAL 58 (65)
T ss_dssp T--HHHHHHHHHHCCSHCHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhccCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 5677887777622222222222222 45555555555555555443
No 55
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=42.92 E-value=1.6e+02 Score=27.53 Aligned_cols=43 Identities=26% Similarity=0.280 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040075 132 QLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKD 175 (254)
Q Consensus 132 ~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 175 (254)
.||..+...++++.. +.-|++.+.+..+..+||+..|.+++.+
T Consensus 131 ~LE~li~~~~EEn~~-lqlqL~~l~~e~~Ekeeesq~LnrELaE 173 (401)
T PF06785_consen 131 HLEGLIRHLREENQC-LQLQLDALQQECGEKEEESQTLNRELAE 173 (401)
T ss_pred HHHHHHHHHHHHHHH-HHHhHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 444444454444433 3446666766666667777777666654
No 56
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=41.90 E-value=1.6e+02 Score=22.82 Aligned_cols=30 Identities=20% Similarity=0.128 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040075 146 EILRQQTDNLLRKEKMLEEENEQIFSLLKD 175 (254)
Q Consensus 146 ~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 175 (254)
..+..++..|+.....+.|||..|+-+-..
T Consensus 18 ~~l~~el~~LK~~~~el~EEN~~L~iEN~~ 47 (110)
T PRK13169 18 GVLLKELGALKKQLAELLEENTALRLENDK 47 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999999977544
No 57
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=41.61 E-value=1.5e+02 Score=24.96 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 040075 152 TDNLLRKEKMLEEENEQIFSLL 173 (254)
Q Consensus 152 i~~lkkk~~~l~een~~L~~~l 173 (254)
...+..|.+.|++||..|....
T Consensus 160 ~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 160 LNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888999998866544
No 58
>smart00340 HALZ homeobox associated leucin zipper.
Probab=41.17 E-value=60 Score=20.83 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 040075 153 DNLLRKEKMLEEENEQIFSLLKDN 176 (254)
Q Consensus 153 ~~lkkk~~~l~een~~L~~~l~~~ 176 (254)
+.|++=-..|.+||+.|.+++++.
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eL 31 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQEL 31 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777888999999999999653
No 59
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=40.56 E-value=2.1e+02 Score=27.64 Aligned_cols=62 Identities=23% Similarity=0.486 Sum_probs=39.1
Q ss_pred ccc-ceEEeCCCCCc-ceecc---ccc-------cchhhhhh-hhhccCCCcEEEEEecCCCCcccccCCCchHHHHHHH
Q 040075 4 GKI-EIARIESRTNR-QVTFS---KRR-------GGLLKKAR-ELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRR 70 (254)
Q Consensus 4 ~Ki-~ik~Ien~~~R-qvTfs---KRr-------~GL~KKA~-ELSvLCda~valIifS~~gk~~e~~s~~~s~~~ileR 70 (254)
+|+ .|+-|.+.++| .|.|- ||. ++|+|+.. +-|+-| -+++|.++|++..| + +++||+.
T Consensus 253 ~k~~~I~~~~D~s~~~~vrivI~lk~~~~~~~~~~~L~k~t~L~~s~~~----Nm~~~~~~g~p~~~-~----l~~iL~~ 323 (445)
T cd00187 253 KKIEGISDVRDESDREGIRFVIELKRGAMAEVVLNGLYKVTKLQTTFGI----NMVAFDPNGRPKKL-N----LKEILQE 323 (445)
T ss_pred CCCcccceeeeccCCCceEEEEEECCCccHHHHHHHHHHhcCCceeeee----eEEEEecCCeeEEe-C----HHHHHHH
Confidence 344 46677777777 34442 333 35665443 222333 67888899998888 5 8899998
Q ss_pred hhhh
Q 040075 71 YQAA 74 (254)
Q Consensus 71 Y~~~ 74 (254)
|-..
T Consensus 324 f~~~ 327 (445)
T cd00187 324 FLDH 327 (445)
T ss_pred HHHH
Confidence 8665
No 60
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=40.28 E-value=2.5e+02 Score=28.01 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 040075 152 TDNLLRKEKMLEEENEQIFSLL 173 (254)
Q Consensus 152 i~~lkkk~~~l~een~~L~~~l 173 (254)
...++.++..|+++...|..+.
T Consensus 215 ~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 215 LAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555665555555554
No 61
>PRK04654 sec-independent translocase; Provisional
Probab=40.05 E-value=3.8 Score=35.40 Aligned_cols=27 Identities=15% Similarity=0.253 Sum_probs=18.0
Q ss_pred EEEEEecCCCCcccccCCCchHHHHHHHhhh
Q 040075 43 IGLIIFSCTGKLTEFCSESTSIEEIIRRYQA 73 (254)
Q Consensus 43 valIifS~~gk~~e~~s~~~s~~~ileRY~~ 73 (254)
|+||||+| .|++++.- ++-+.+.+++.
T Consensus 15 VALlV~GP-erLPe~aR---tlGk~irk~R~ 41 (214)
T PRK04654 15 VALVVLGP-ERLPKAAR---FAGLWVRRARM 41 (214)
T ss_pred HHHHhcCc-hHHHHHHH---HHHHHHHHHHH
Confidence 67888888 77777753 45555555543
No 62
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=39.69 E-value=1e+02 Score=23.40 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040075 144 KMEILRQQTDNLLRKEKMLEEENEQIFSLLKD 175 (254)
Q Consensus 144 K~~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 175 (254)
.-|+..++.+-|+++...++++|+.|..++..
T Consensus 9 qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~k 40 (96)
T PF11365_consen 9 QLQFVEEEAELLRRKLSELEDENKQLTEELNK 40 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788999999999999999999998854
No 63
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=39.63 E-value=32 Score=27.75 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=25.3
Q ss_pred CCcEEEEEecCCCCcccccCCCchHHHHHHHhhhh
Q 040075 40 DAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAA 74 (254)
Q Consensus 40 da~valIifS~~gk~~e~~s~~~s~~~ileRY~~~ 74 (254)
...++-||+ ++|++-+|..| .++.+|+..|=.+
T Consensus 14 ~~~~vkvv~-~~G~v~~~~~p-v~a~evm~~~P~h 46 (181)
T PF14009_consen 14 SAATVKVVH-PDGKVEEFKRP-VTAAEVMLENPGH 46 (181)
T ss_pred CCceEEEEc-CCCcEEEeCCC-cCHHHHHHHCCCC
Confidence 444555555 88999999776 8999999998654
No 64
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=39.10 E-value=1.5e+02 Score=21.60 Aligned_cols=42 Identities=21% Similarity=0.435 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 121 VKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENE 167 (254)
Q Consensus 121 Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~ 167 (254)
+|++=|..||..+..++..|- +|.-+|+.||.|-..|.+++.
T Consensus 1 MS~EvleqLE~KIqqAvdtI~-----LLqmEieELKekn~~L~~e~~ 42 (79)
T PRK15422 1 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 577888999999998888874 455556677666555555433
No 65
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=38.74 E-value=20 Score=27.86 Aligned_cols=38 Identities=24% Similarity=0.400 Sum_probs=28.2
Q ss_pred Ccceeccccccch---------hhhhhhhhccCCCcEEEEEecCCCC
Q 040075 16 NRQVTFSKRRGGL---------LKKARELSVLCDAEIGLIIFSCTGK 53 (254)
Q Consensus 16 ~RqvTfsKRr~GL---------~KKA~ELSvLCda~valIifS~~gk 53 (254)
.+-+-||+=|+-| +-|..|+.+=||.|+-+++..+.|.
T Consensus 49 g~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~Dall~~V~q~gg 95 (111)
T COG0139 49 GEAHYYSRSRQELWTKGETSGHTQKVVEIRLDCDGDALLLLVEQIGG 95 (111)
T ss_pred CeEEEEEcchhhheccccccCceEEEEEEEcCCCCCEEEEEEEeCCC
Confidence 3344456666644 5557899999999999999998664
No 66
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=38.56 E-value=2.9e+02 Score=25.53 Aligned_cols=40 Identities=13% Similarity=0.180 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040075 136 SVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDN 176 (254)
Q Consensus 136 ~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~ 176 (254)
.|...|++- .-+..+++.|+.+...++.+++.|+..+..+
T Consensus 73 lL~~sre~N-k~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 73 LLSESREQN-KKLKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 344444443 3357788899999999999999999988653
No 67
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=38.21 E-value=1.1e+02 Score=22.99 Aligned_cols=46 Identities=22% Similarity=0.220 Sum_probs=34.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040075 117 DLNSVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKD 175 (254)
Q Consensus 117 dL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 175 (254)
...+++.+++.. +.-......+++.|+.....++.+|..|...+..
T Consensus 60 ~~~~l~P~~~i~-------------a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~ 105 (109)
T PF03980_consen 60 WRHSLTPEEDIR-------------AHLAPYKKKEREQLNARLQELEEENEALAEEIQE 105 (109)
T ss_pred CCCCCChHHHHH-------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788877643 3333445667789999999999999999998864
No 68
>PRK09343 prefoldin subunit beta; Provisional
Probab=38.17 E-value=73 Score=24.90 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 132 QLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLK 174 (254)
Q Consensus 132 ~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l~ 174 (254)
..+.+...|..|+. .+...|..+.++...+++.-..+...+.
T Consensus 68 d~~e~~~~l~~r~E-~ie~~ik~lekq~~~l~~~l~e~q~~l~ 109 (121)
T PRK09343 68 DKTKVEKELKERKE-LLELRSRTLEKQEKKLREKLKELQAKIN 109 (121)
T ss_pred cHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555544443 3456777777777777776666666653
No 69
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=37.39 E-value=2.9e+02 Score=24.40 Aligned_cols=21 Identities=14% Similarity=0.300 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 040075 122 KLEELTQLEHQLECSVKKVRV 142 (254)
Q Consensus 122 s~~EL~~LE~~Le~~L~~VR~ 142 (254)
+.+++.+|...++.+-.++.+
T Consensus 87 ~~~e~~aL~~E~~~ak~r~~~ 107 (239)
T COG1579 87 DERELRALNIEIQIAKERINS 107 (239)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 566777777666655555444
No 70
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=37.30 E-value=2.5e+02 Score=23.61 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 125 ELTQLEHQLECSVKKVRVRKMEILR 149 (254)
Q Consensus 125 EL~~LE~~Le~~L~~VR~RK~~ll~ 149 (254)
++..|+..|....+.--.|+++++-
T Consensus 139 ~i~slk~EL~d~iKe~e~~emeLyy 163 (181)
T PF04645_consen 139 EIESLKSELNDLIKEREIREMELYY 163 (181)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555544444444443
No 71
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=36.60 E-value=2.5e+02 Score=27.50 Aligned_cols=51 Identities=22% Similarity=0.274 Sum_probs=30.0
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 117 DLNSVKLEELTQLEHQLECSVKKVR---VRKMEILRQQTDNLLRKEKMLEEENEQIFSLLK 174 (254)
Q Consensus 117 dL~~Ls~~EL~~LE~~Le~~L~~VR---~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l~ 174 (254)
||+.||.+||+. +++.+++.+- .-|.++. +.|+.++..|+.--+.|.....
T Consensus 198 ~i~~lsteelr~---qVD~A~~q~VnP~k~KeQLV----~QLkTQItDLErFInFlQ~e~~ 251 (621)
T KOG3759|consen 198 DIDKLSTEELRR---QVDDALKQLVNPFKEKEQLV----DQLKTQITDLERFINFLQDEVG 251 (621)
T ss_pred CcccccHHHHHH---HHHHHHHHHhChHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhh
Confidence 688899888764 5555555432 2344443 4566666666665555555543
No 72
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=36.43 E-value=1.7e+02 Score=22.14 Aligned_cols=53 Identities=9% Similarity=0.176 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 120 SVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLL 173 (254)
Q Consensus 120 ~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l 173 (254)
++|++|+..+-......-..+.. ...++.+++..+..+...|+..-..|..++
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~-~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (113)
T cd01109 57 GMSIKDIKEYAELRREGDSTIPE-RLELLEEHREELEEQIAELQETLAYLDYKI 109 (113)
T ss_pred CCCHHHHHHHHHHHccCCccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777765443322111211 234556666666666666555554444443
No 73
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=36.01 E-value=2.6e+02 Score=27.21 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 139 KVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSL 172 (254)
Q Consensus 139 ~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~ 172 (254)
.+-++|.+.+.+.++.+.+....++|+|+.|...
T Consensus 378 k~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~kn 411 (493)
T KOG0804|consen 378 KIVERKLQQLQTKLKKCQKELKEEREENKKLIKN 411 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555556666667777777777777766544
No 74
>PRK11637 AmiB activator; Provisional
Probab=35.89 E-value=3.3e+02 Score=25.78 Aligned_cols=72 Identities=18% Similarity=0.225 Sum_probs=30.9
Q ss_pred HHHHHhhhhhhhhHHHHhhhcccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 040075 90 AIYNELGRMRKETHNLELSLRRYTGDIDLNSVKLEELTQLEHQLECSVKKVRVRKMEI--LRQQTDNLLRKEKMLEEENE 167 (254)
Q Consensus 90 ~l~~e~~kLkke~~~L~~~~r~~~Ge~dL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~l--l~~qi~~lkkk~~~l~een~ 167 (254)
.+..++..+++++..++..++. ...+|..++..|...-..|+....++ +..+|+.++++...++++-.
T Consensus 51 ~l~~qi~~~~~~i~~~~~~~~~----------~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 51 SIQQDIAAKEKSVRQQQQQRAS----------LLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443332 13345555555555544444433222 23344444444444444333
Q ss_pred HHHH
Q 040075 168 QIFS 171 (254)
Q Consensus 168 ~L~~ 171 (254)
.+..
T Consensus 121 ~~~~ 124 (428)
T PRK11637 121 AQER 124 (428)
T ss_pred HHHH
Confidence 3333
No 75
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=34.96 E-value=82 Score=33.50 Aligned_cols=46 Identities=20% Similarity=0.167 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040075 131 HQLECSVKKVRVRKMEI-LRQQTDNLLRKEKMLEEENEQIFSLLKDN 176 (254)
Q Consensus 131 ~~Le~~L~~VR~RK~~l-l~~qi~~lkkk~~~l~een~~L~~~l~~~ 176 (254)
+.|+.-|.+.|+|-..+ +..+|-+|++|...++.++...+.++++.
T Consensus 281 eMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL 327 (1195)
T KOG4643|consen 281 EMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEEL 327 (1195)
T ss_pred HHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34777777777776542 34578888888888888888888888763
No 76
>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3.5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.
Probab=34.24 E-value=15 Score=26.61 Aligned_cols=37 Identities=27% Similarity=0.441 Sum_probs=27.7
Q ss_pred cceeccccccchhhh---------hhhhhccCCCcEEEEEecCCCC
Q 040075 17 RQVTFSKRRGGLLKK---------ARELSVLCDAEIGLIIFSCTGK 53 (254)
Q Consensus 17 RqvTfsKRr~GL~KK---------A~ELSvLCda~valIifS~~gk 53 (254)
+-+-||+-|++|-.| +.|+.+-||.|+-|+..-|.|.
T Consensus 18 ~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V~~~G~ 63 (75)
T PF01502_consen 18 RATYYSRSRNRLWRKGETSGNTQKVVEIRLDCDGDALLFKVEQVGP 63 (75)
T ss_dssp B-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-
T ss_pred cEEEEEccCCcEeeEECCCCCEEEEEEEEecCCCCeEEEEEEeCCC
Confidence 344568888777555 5789999999999999998887
No 77
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=34.20 E-value=27 Score=28.15 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=21.7
Q ss_pred hhccCCCcEEEEEecCCCCcccccC
Q 040075 35 LSVLCDAEIGLIIFSCTGKLTEFCS 59 (254)
Q Consensus 35 LSvLCda~valIifS~~gk~~e~~s 59 (254)
+.++|||+|-+++-|.+.+-..|++
T Consensus 59 ~tt~~dadvi~~v~~and~~s~f~p 83 (148)
T COG4917 59 ITTLQDADVIIYVHAANDPESRFPP 83 (148)
T ss_pred HHHhhccceeeeeecccCccccCCc
Confidence 5689999999999999888777765
No 78
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=33.98 E-value=1.5e+02 Score=21.15 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 143 RKMEILRQQTDNLLRKEKMLEEENEQIFSLL 173 (254)
Q Consensus 143 RK~~ll~~qi~~lkkk~~~l~een~~L~~~l 173 (254)
.|.+-..+.|..|+.++..|.++|..|...-
T Consensus 11 ~ki~~aveti~~Lq~e~eeLke~n~~L~~e~ 41 (72)
T PF06005_consen 11 EKIQQAVETIALLQMENEELKEKNNELKEEN 41 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4556667788888888888888888887554
No 79
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=33.90 E-value=1.3e+02 Score=22.95 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040075 146 EILRQQTDNLLRKEKMLEEENEQIFSLLKD 175 (254)
Q Consensus 146 ~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 175 (254)
.-+..++..++.+...++++|..|..++..
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~ 59 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDD 59 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777888888777754
No 80
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=33.80 E-value=95 Score=28.22 Aligned_cols=45 Identities=20% Similarity=0.327 Sum_probs=31.9
Q ss_pred ceEEeCCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccccCCCchHHHHHHHhhh
Q 040075 7 EIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQA 73 (254)
Q Consensus 7 ~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~~~s~~~ileRY~~ 73 (254)
.+..|.|.+.|..+=| | .||..|.+ ++| .|-++ +.|++|++.|..
T Consensus 25 n~~li~n~tqr~t~~s-R------------~L~Ecel~---~~p-----~Y~nD-pEmK~iid~~n~ 69 (295)
T TIGR01478 25 NVSYIQNNTQMTSTKS-R------------LLAEIQRP---KNP-----HYHND-PELKEIIDKLNE 69 (295)
T ss_pred ceecccCccccccccc-e------------ehhhhccc---cCC-----CCCCc-HHHHHHHHHHhH
Confidence 4667888888777633 2 47887775 333 46555 899999999865
No 81
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=33.29 E-value=60 Score=29.77 Aligned_cols=24 Identities=46% Similarity=0.415 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 040075 152 TDNLLRKEKMLEEENEQIFSLLKD 175 (254)
Q Consensus 152 i~~lkkk~~~l~een~~L~~~l~~ 175 (254)
++.|++|.+.|++||..|+.....
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~ 185 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQ 185 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999988644
No 82
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=33.20 E-value=3.8e+02 Score=25.66 Aligned_cols=72 Identities=13% Similarity=0.178 Sum_probs=40.0
Q ss_pred HHHHHHHhhhhcCCccCCCCCCcchhHHHHHhhhhhhhhHHHHhhhcccCCC-----CcCCCCCHHHHHHHHHHHHHH
Q 040075 64 IEEIIRRYQAAKGVRIPAGVSNHDSEAIYNELGRMRKETHNLELSLRRYTGD-----IDLNSVKLEELTQLEHQLECS 136 (254)
Q Consensus 64 ~~~ileRY~~~~~~~~~~~~~~~~~e~l~~e~~kLkke~~~L~~~~r~~~Ge-----~dL~~Ls~~EL~~LE~~Le~~ 136 (254)
++.+++.|......... .....-.+++..++.+++++++..+..++.+.-+ ++-.+....++.++++.+...
T Consensus 140 ~n~l~~~yi~~~~~~~~-~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 216 (498)
T TIGR03007 140 VQTLLTIFVEETLGSKR-QDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAA 216 (498)
T ss_pred HHHHHHHHHHhhcccch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHH
Confidence 55666667765432211 0001226688999999999998888777654322 011223345556665554433
No 83
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=33.14 E-value=2.3e+02 Score=21.83 Aligned_cols=55 Identities=11% Similarity=0.146 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 120 SVKLEELTQLEHQLECSVKKV--RVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLK 174 (254)
Q Consensus 120 ~Ls~~EL~~LE~~Le~~L~~V--R~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l~ 174 (254)
+++++++..+-...+.+-... .....+++.+++..+..+...+++.-..|...+.
T Consensus 55 G~~L~~I~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~ 111 (118)
T cd04776 55 GFSLEEIRELLDLYDPPGGNRKQLEKMLEKIEKRRAELEQQRRDIDAALAELDAAEE 111 (118)
T ss_pred CCCHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666655443321111 1122355666677777776666666656655553
No 84
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.14 E-value=1.4e+02 Score=19.28 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 143 RKMEILRQQTDNLLRKEKMLEEENEQIFSLLK 174 (254)
Q Consensus 143 RK~~ll~~qi~~lkkk~~~l~een~~L~~~l~ 174 (254)
+-+..|....+.|+..-..|..||..|+.++.
T Consensus 5 ~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~ 36 (45)
T PF02183_consen 5 RDYDALKASYDSLKAEYDSLKKENEKLRAEVQ 36 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888888898888899999988888874
No 85
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=32.97 E-value=3.3e+02 Score=23.74 Aligned_cols=9 Identities=11% Similarity=0.556 Sum_probs=5.0
Q ss_pred CCCcccccC
Q 040075 51 TGKLTEFCS 59 (254)
Q Consensus 51 ~gk~~e~~s 59 (254)
..+..-||+
T Consensus 7 ~~~~~~~C~ 15 (302)
T PF10186_consen 7 NSRRRFYCA 15 (302)
T ss_pred CCCCCeECH
Confidence 344555677
No 86
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=32.45 E-value=1.6e+02 Score=20.39 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040075 148 LRQQTDNLLRKEKMLEEENEQIFSLLKDN 176 (254)
Q Consensus 148 l~~qi~~lkkk~~~l~een~~L~~~l~~~ 176 (254)
+..++..++++...+.++|..|..++...
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677788888888888888888887543
No 87
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=32.38 E-value=94 Score=25.93 Aligned_cols=43 Identities=21% Similarity=0.361 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 040075 126 LTQLEHQLECSVKKVRVRKMEILRQQT---DNLLRKEKMLEEENEQIFSLL 173 (254)
Q Consensus 126 L~~LE~~Le~~L~~VR~RK~~ll~~qi---~~lkkk~~~l~een~~L~~~l 173 (254)
|.+||..+..++.+ +-+|..++ +.|+-..+.|.+|-+.|+.++
T Consensus 2 LeD~EsklN~AIER-----nalLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIER-----NALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777654 34455455 334444444555555555444
No 88
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=32.20 E-value=4e+02 Score=27.63 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 123 LEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEE 164 (254)
Q Consensus 123 ~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~e 164 (254)
..++..+...|+.....++++|.+++.+--+..+.-.+.+.+
T Consensus 538 ~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~ 579 (771)
T TIGR01069 538 LKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKK 579 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666777777777777777777775443333333333333
No 89
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=31.26 E-value=7e+02 Score=26.94 Aligned_cols=60 Identities=17% Similarity=0.269 Sum_probs=36.6
Q ss_pred hHHHHHhhhhhhhhHHHHhhhcccCCCCcC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 89 EAIYNELGRMRKETHNLELSLRRYTGDIDL------NSVKLEELTQLEHQLECSVKKVRVRKMEIL 148 (254)
Q Consensus 89 e~l~~e~~kLkke~~~L~~~~r~~~Ge~dL------~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll 148 (254)
..+..|+++|+.++...+..+.-++-+... -.-..+.+.+++..|+..-..|+......+
T Consensus 407 Kd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 407 KDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356678888888777776655444333011 011245667778888877777777766554
No 90
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=31.04 E-value=4.7e+02 Score=27.20 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 123 LEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEE 165 (254)
Q Consensus 123 ~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~ee 165 (254)
..++..+...++.......+++.+++.+.-+..++-.+...++
T Consensus 543 ~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~ 585 (782)
T PRK00409 543 LKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKE 585 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666666654444444433333333
No 91
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=30.91 E-value=3e+02 Score=22.57 Aligned_cols=83 Identities=25% Similarity=0.307 Sum_probs=51.2
Q ss_pred HHHHHhhhhhhhhHHHHhhhccc--CCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH
Q 040075 90 AIYNELGRMRKETHNLELSLRRY--TGDIDLNSVKLEELTQLEHQLECSVKKVRVRKMEILR---------QQTDNLLRK 158 (254)
Q Consensus 90 ~l~~e~~kLkke~~~L~~~~r~~--~Ge~dL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~---------~qi~~lkkk 158 (254)
.+.-....++..+.+++..+++. +|+ +|.+-|..+|.-.-.....+|.+|-.++.. ..+...+.|
T Consensus 10 ~~Rl~~~~lk~~l~k~~~ql~~ke~lge----~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keK 85 (177)
T PF13870_consen 10 KLRLKNITLKHQLAKLEEQLRQKEELGE----GLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEK 85 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555443 455 456666666666666666677666665553 233556778
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 040075 159 EKMLEEENEQIFSLLKDN 176 (254)
Q Consensus 159 ~~~l~een~~L~~~l~~~ 176 (254)
...+..++..+...+.+.
T Consensus 86 l~~~~~~~~~l~~~l~~~ 103 (177)
T PF13870_consen 86 LHFLSEELERLKQELKDR 103 (177)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888887653
No 92
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=30.46 E-value=41 Score=26.05 Aligned_cols=27 Identities=30% Similarity=0.285 Sum_probs=21.5
Q ss_pred hhhhhccCCCcEEEEEecCCCCcccccC
Q 040075 32 ARELSVLCDAEIGLIIFSCTGKLTEFCS 59 (254)
Q Consensus 32 A~ELSvLCda~valIifS~~gk~~e~~s 59 (254)
-.+|..|-|| +|+..||++|++.+|-.
T Consensus 3 l~~Lm~lpGv-~AAg~Fs~~G~l~e~~G 29 (108)
T PF09941_consen 3 LDKLMKLPGV-VAAGEFSDDGKLVEYKG 29 (108)
T ss_pred HHHhhcCCCe-EEEEEECCCCeEEeeec
Confidence 4577777777 45678999999999876
No 93
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=30.45 E-value=2.2e+02 Score=27.67 Aligned_cols=41 Identities=20% Similarity=-0.001 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040075 135 CSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKD 175 (254)
Q Consensus 135 ~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 175 (254)
..|.-=|+|=+|+-..---.++.+...+.+....|+.-+.+
T Consensus 102 gkLhtgRSRNDQVatd~rL~lr~~~~~l~~~i~~l~~aL~~ 142 (459)
T COG0165 102 GKLHTGRSRNDQVATDLRLWLRDKLLELLELIRILQKALLD 142 (459)
T ss_pred chhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445577888887766667888899999999998888854
No 94
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=30.41 E-value=3.2e+02 Score=22.72 Aligned_cols=51 Identities=24% Similarity=0.294 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 123 LEELTQLEHQLECSVKKVRV----------RKMEILRQQTDNLLRKEKMLEEENEQIFSLL 173 (254)
Q Consensus 123 ~~EL~~LE~~Le~~L~~VR~----------RK~~ll~~qi~~lkkk~~~l~een~~L~~~l 173 (254)
+.++..+++.++...+.... .+..-..++++.++++....+.+...|+.+.
T Consensus 124 i~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~ 184 (192)
T PF05529_consen 124 IKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQS 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555544443321 2233345556666666655555555555554
No 95
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=29.82 E-value=2.5e+02 Score=21.27 Aligned_cols=44 Identities=16% Similarity=0.319 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 129 LEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLL 173 (254)
Q Consensus 129 LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l 173 (254)
++...+.++..|..|+..+ ...|..+.++...+++.-..+...+
T Consensus 61 v~~~~~e~~~~l~~r~e~i-e~~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 61 VKTDKEEAIQELKEKKETL-ELRVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred heecHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555655555443 5556666666655555555544444
No 96
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=29.60 E-value=76 Score=28.45 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 123 LEELTQLEHQLECSVKKVRVRKMEI 147 (254)
Q Consensus 123 ~~EL~~LE~~Le~~L~~VR~RK~~l 147 (254)
.-+--+-+.+|+.-+...++-|.++
T Consensus 86 ~~q~y~q~s~Leddlsqt~aikeql 110 (333)
T KOG1853|consen 86 RVQFYQQESQLEDDLSQTHAIKEQL 110 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666777777777766654
No 97
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=29.60 E-value=54 Score=24.91 Aligned_cols=32 Identities=28% Similarity=0.260 Sum_probs=23.4
Q ss_pred hhhhhhhccCCCcEEEEEecCCCCcccccCCCc
Q 040075 30 KKARELSVLCDAEIGLIIFSCTGKLTEFCSEST 62 (254)
Q Consensus 30 KKA~ELSvLCda~valIifS~~gk~~e~~s~~~ 62 (254)
.|-.||--+-+|= |.=.|||+||+.+|-++-+
T Consensus 3 ekLdeLlqi~Gv~-AAGefs~DGkLv~Ykgdm~ 34 (109)
T COG4831 3 EKLDELLQIKGVM-AAGEFSPDGKLVEYKGDMP 34 (109)
T ss_pred hhHHHHhCcccee-EeceeCCCCceEEeeCCCC
Confidence 3556776666664 4457999999999988643
No 98
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=29.34 E-value=1.7e+02 Score=22.28 Aligned_cols=54 Identities=11% Similarity=0.036 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 120 SVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLL 173 (254)
Q Consensus 120 ~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l 173 (254)
+++++|+..+-...+..-......-..++.++.+.+.++.+.++..-..|...+
T Consensus 56 G~sl~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (116)
T cd04769 56 GFTLAELKAIFAGHEGRAVLPWPHLQQALEDKKQEIRAQITELQQLLARLDAFE 109 (116)
T ss_pred CCCHHHHHHHHhccccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666654433221111112234455555555555555555544444443
No 99
>smart00338 BRLZ basic region leucin zipper.
Probab=29.31 E-value=1.8e+02 Score=19.62 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 146 EILRQQTDNLLRKEKMLEEENEQIFSLL 173 (254)
Q Consensus 146 ~ll~~qi~~lkkk~~~l~een~~L~~~l 173 (254)
+.|..+...|+.++..|..++..|...+
T Consensus 36 ~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 36 EQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566677777777777777766554
No 100
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=29.04 E-value=4.6e+02 Score=24.14 Aligned_cols=86 Identities=16% Similarity=0.268 Sum_probs=43.1
Q ss_pred HHHHHhhhhhhhhHHHHhhhcccCCC-CcCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
Q 040075 90 AIYNELGRMRKETHNLELSLRRYTGD-IDLN-----SVKLEELTQLEHQLECSVKKVRVRKMEILRQQ------TDNLLR 157 (254)
Q Consensus 90 ~l~~e~~kLkke~~~L~~~~r~~~Ge-~dL~-----~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~q------i~~lkk 157 (254)
.|+..+.+|..+...|+..+-.-... ++.. .+..+-...+...+...-..|..-+.++...+ +..+-.
T Consensus 182 ~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~ 261 (310)
T PF09755_consen 182 RLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQ 261 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555665555432221 0111 11112223344444433334443344444333 334556
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 040075 158 KEKMLEEENEQIFSLLKD 175 (254)
Q Consensus 158 k~~~l~een~~L~~~l~~ 175 (254)
.++.+.++|..|+.++..
T Consensus 262 eek~ireEN~rLqr~L~~ 279 (310)
T PF09755_consen 262 EEKEIREENRRLQRKLQR 279 (310)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 788899999999999954
No 101
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=29.03 E-value=3.7e+02 Score=23.00 Aligned_cols=87 Identities=21% Similarity=0.289 Sum_probs=42.3
Q ss_pred HHHHHHHhhhhcCCccCCC------CCCcc--hhHHHHHhhhhhhhhHHHHhhhcccCCCCcCCCCCHHHHHHHHHHHHH
Q 040075 64 IEEIIRRYQAAKGVRIPAG------VSNHD--SEAIYNELGRMRKETHNLELSLRRYTGDIDLNSVKLEELTQLEHQLEC 135 (254)
Q Consensus 64 ~~~ileRY~~~~~~~~~~~------~~~~~--~e~l~~e~~kLkke~~~L~~~~r~~~Ge~dL~~Ls~~EL~~LE~~Le~ 135 (254)
-+.++.|.+.......... ..+.+ .+.--.||..||+.|.+|+.+++ ||.+|-..|+.
T Consensus 18 keel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNq--------------ELRdLCCFLDd 83 (195)
T PF10226_consen 18 KEELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQ--------------ELRDLCCFLDD 83 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHcccch
Confidence 4667777766543322100 01222 23444566777777777765443 44444444443
Q ss_pred H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 136 S----------VKKVRVRKMEILRQQTDNLLRKEKMLEE 164 (254)
Q Consensus 136 ~----------L~~VR~RK~~ll~~qi~~lkkk~~~l~e 164 (254)
- ..+.-..-..+|.+++..+.+|.+.|+.
T Consensus 84 dRqKgrklarEWQrFGryta~vmr~eV~~Y~~KL~eLE~ 122 (195)
T PF10226_consen 84 DRQKGRKLAREWQRFGRYTASVMRQEVAQYQQKLKELED 122 (195)
T ss_pred hHHHhHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111112234556666666666666544
No 102
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=28.93 E-value=4.5e+02 Score=25.67 Aligned_cols=70 Identities=16% Similarity=0.247 Sum_probs=31.8
Q ss_pred HHHHHhhhhhhhhHHHHhhhcccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 90 AIYNELGRMRKETHNLELSLRRYTGDIDLNSVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQI 169 (254)
Q Consensus 90 ~l~~e~~kLkke~~~L~~~~r~~~Ge~dL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L 169 (254)
.+..++..+..+|+.|..++..+.. ....+.+++..++...|.. +.++.+.|+.....++..-..|
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~----------r~~~id~~i~~av~~~~~~----~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQK----------REQSIDQQIQQAVQSETQE----LTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------hhhhHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555544433222 1223445555555554422 3334445544444444444444
Q ss_pred HHHH
Q 040075 170 FSLL 173 (254)
Q Consensus 170 ~~~l 173 (254)
..++
T Consensus 136 ~~~l 139 (472)
T TIGR03752 136 QRRL 139 (472)
T ss_pred HHHH
Confidence 4444
No 103
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=28.70 E-value=3.6e+02 Score=26.85 Aligned_cols=16 Identities=25% Similarity=0.464 Sum_probs=6.9
Q ss_pred HHHHhhhhhhhhHHHH
Q 040075 91 IYNELGRMRKETHNLE 106 (254)
Q Consensus 91 l~~e~~kLkke~~~L~ 106 (254)
+..++.+|+.+++.++
T Consensus 111 ~e~ei~kl~~e~~elr 126 (546)
T KOG0977|consen 111 LEIEITKLREELKELR 126 (546)
T ss_pred HHHHHHHhHHHHHHHH
Confidence 3344444444444443
No 104
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.60 E-value=1.9e+02 Score=26.45 Aligned_cols=43 Identities=28% Similarity=0.370 Sum_probs=30.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 118 LNSVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQI 169 (254)
Q Consensus 118 L~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L 169 (254)
-++||.+|-..| .+||.||.+++ ++|+.|+..++...+|-..|
T Consensus 8 p~~Ls~~E~~eL--------~~ir~rk~qL~-deIq~Lk~Ei~ev~~eid~~ 50 (395)
T KOG0930|consen 8 PNDLSEEERMEL--------ENIRRRKQELL-DEIQRLKDEIAEVMEEIDNL 50 (395)
T ss_pred CCCCCHHHHHhH--------HHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhh
Confidence 467777776655 46889998886 57888888777666554433
No 105
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=28.27 E-value=2.6e+02 Score=21.02 Aligned_cols=48 Identities=17% Similarity=0.122 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 120 SVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLL 173 (254)
Q Consensus 120 ~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l 173 (254)
+++++|+..+-..... +.-..++.++++.+..+...++..-..|...+
T Consensus 58 G~sl~~i~~l~~~~~~------~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~l 105 (108)
T cd01107 58 GFPLEEIKEILDADND------DELRKLLREKLAELEAEIEELQRILRLLEDRL 105 (108)
T ss_pred CCCHHHHHHHHhcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777776555432 33444555566666666666555555554443
No 106
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=28.09 E-value=3.1e+02 Score=21.82 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 149 RQQTDNLLRKEKMLEEENEQIFSLLK 174 (254)
Q Consensus 149 ~~qi~~lkkk~~~l~een~~L~~~l~ 174 (254)
..++..+..+.+...++...+..++.
T Consensus 100 ~~~~~~~~~~~k~~kee~~klk~~~~ 125 (151)
T PF11559_consen 100 QKQLKSLEAKLKQEKEELQKLKNQLQ 125 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666654
No 107
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=28.01 E-value=4.4e+02 Score=24.72 Aligned_cols=99 Identities=17% Similarity=0.210 Sum_probs=52.3
Q ss_pred hhccCCCcEEEEEecCCCCcccccCCCchHHHHHHHhhhhcCCccCCCCCCcchhHHHHHhhhhhhhhHHHHhhhcccC-
Q 040075 35 LSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAKGVRIPAGVSNHDSEAIYNELGRMRKETHNLELSLRRYT- 113 (254)
Q Consensus 35 LSvLCda~valIifS~~gk~~e~~s~~~s~~~ileRY~~~~~~~~~~~~~~~~~e~l~~e~~kLkke~~~L~~~~r~~~- 113 (254)
|+|--+-+-.+|-+|=++.-++.+. .=++.+++.|....-.... .......+++..++..++++++..+..+..+.
T Consensus 123 l~v~~~~~s~ii~is~~~~dp~~A~--~i~n~~~~~y~~~~~~~~~-~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~ 199 (444)
T TIGR03017 123 LEVKPSRESSVISIEFSGVDPRFAA--TVANAFAQAYIDTNIELKV-EPAQKAALWFVQQIAALREDLARAQSKLSAYQQ 199 (444)
T ss_pred CeEEecCCceEEEEEEeCCCHHHHH--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555554444444433 3456666677765432111 00011256888899999998888877665443
Q ss_pred --CCCcCC---CCCHHHHHHHHHHHHHH
Q 040075 114 --GDIDLN---SVKLEELTQLEHQLECS 136 (254)
Q Consensus 114 --Ge~dL~---~Ls~~EL~~LE~~Le~~ 136 (254)
|-.+++ ++....|.+|+.++...
T Consensus 200 ~~~i~~~~~~~~~~~~~l~~l~~~l~~~ 227 (444)
T TIGR03017 200 EKGIVSSDERLDVERARLNELSAQLVAA 227 (444)
T ss_pred HcCCcccCcccchHHHHHHHHHHHHHHH
Confidence 211222 23345666666655544
No 108
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=27.55 E-value=4.1e+02 Score=24.92 Aligned_cols=82 Identities=16% Similarity=0.216 Sum_probs=51.8
Q ss_pred hHHHHHhhhhhhhhHHHHhhhcccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 89 EAIYNELGRMRKETHNLELSLRRYTGDIDLNSVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQ 168 (254)
Q Consensus 89 e~l~~e~~kLkke~~~L~~~~r~~~Ge~dL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~ 168 (254)
+-++..+.|+-+.++-|+. ++.-..+ .....++|+.--++|-+.|..+|+ -.-.....++.|..-.+.+.|||..
T Consensus 71 ~llq~kirk~~e~~eglr~-i~es~~e---~q~e~~qL~~qnqkL~nqL~~~~~-vf~k~k~~~q~LE~li~~~~EEn~~ 145 (401)
T PF06785_consen 71 QLLQTKIRKITEKDEGLRK-IRESVEE---RQQESEQLQSQNQKLKNQLFHVRE-VFMKTKGDIQHLEGLIRHLREENQC 145 (401)
T ss_pred HHHHHHHHHHHhccHHHHH-HHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHH-HHHHhcchHHHHHHHHHHHHHHHHH
Confidence 4566667776666666643 2211111 012366777777888888888877 2333345667777778888889988
Q ss_pred HHHHHHh
Q 040075 169 IFSLLKD 175 (254)
Q Consensus 169 L~~~l~~ 175 (254)
|..++.+
T Consensus 146 lqlqL~~ 152 (401)
T PF06785_consen 146 LQLQLDA 152 (401)
T ss_pred HHHhHHH
Confidence 8888765
No 109
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=27.50 E-value=63 Score=23.82 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 148 LRQQTDNLLRKEKMLEEENEQIFSLL 173 (254)
Q Consensus 148 l~~qi~~lkkk~~~l~een~~L~~~l 173 (254)
+..+++.++++...+.+.-..+...+
T Consensus 74 ~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 74 LEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666655555555554444
No 110
>PRK01770 sec-independent translocase; Provisional
Probab=27.30 E-value=34 Score=28.67 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=19.3
Q ss_pred EEEEEecCCCCcccccCCCchHHHHHHHhhhh
Q 040075 43 IGLIIFSCTGKLTEFCSESTSIEEIIRRYQAA 74 (254)
Q Consensus 43 valIifS~~gk~~e~~s~~~s~~~ileRY~~~ 74 (254)
|+||||+| .|++++.- ++-..+.++++.
T Consensus 15 VaLlV~GP-erLP~~~r---~lg~~i~~~R~~ 42 (171)
T PRK01770 15 IGLVVLGP-QRLPVAVK---TVAGWIRALRSL 42 (171)
T ss_pred HHHHhcCc-hHHHHHHH---HHHHHHHHHHHH
Confidence 78899998 77877753 466666666554
No 111
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=27.18 E-value=4.7e+02 Score=26.05 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=45.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040075 117 DLNSVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDN 176 (254)
Q Consensus 117 dL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~ 176 (254)
+........|++--+.++.+|..|.+...++ .+.+..|+|-+...++.-.++..++..-
T Consensus 371 ~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~-~e~L~~LrkdEl~Are~l~~~~~~l~ei 429 (570)
T COG4477 371 EAQEVAYSELQDNLEEIEKALTDIEDEQEKV-QEHLTSLRKDELEARENLERLKSKLHEI 429 (570)
T ss_pred hcccccHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677788887788888888887766654 6778888888888888888888887653
No 112
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=26.94 E-value=4.9e+02 Score=25.36 Aligned_cols=45 Identities=16% Similarity=0.147 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 120 SVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEE 165 (254)
Q Consensus 120 ~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~ee 165 (254)
..++.++.++-..+...+..++.+...+ ..++..++++...|+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~ 167 (525)
T TIGR02231 123 EPDLKEWFQAFDFNGSEIERLLTEDREA-ERRIRELEKQLSELQNE 167 (525)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 5688899998888888888877666433 33444444444444333
No 113
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=26.62 E-value=1.1e+02 Score=20.29 Aligned_cols=18 Identities=33% Similarity=0.268 Sum_probs=12.0
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 040075 117 DLNSVKLEELTQLEHQLE 134 (254)
Q Consensus 117 dL~~Ls~~EL~~LE~~Le 134 (254)
-|..+|++||+..-..|+
T Consensus 4 fLk~ls~~eL~~rl~~LD 21 (49)
T PF11629_consen 4 FLKFLSYEELQQRLASLD 21 (49)
T ss_dssp GGGGS-HHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHhCC
Confidence 467788998887655554
No 114
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=26.51 E-value=3.2e+02 Score=26.67 Aligned_cols=29 Identities=21% Similarity=0.353 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 146 EILRQQTDNLLRKEKMLEEENEQIFSLLK 174 (254)
Q Consensus 146 ~ll~~qi~~lkkk~~~l~een~~L~~~l~ 174 (254)
+++..+...++.|++.++.+|..|+.++.
T Consensus 93 q~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 93 DVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44556667778888899999999998884
No 115
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=26.50 E-value=2.7e+02 Score=24.65 Aligned_cols=11 Identities=18% Similarity=0.178 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 040075 133 LECSVKKVRVR 143 (254)
Q Consensus 133 Le~~L~~VR~R 143 (254)
|+..+..+..+
T Consensus 108 le~el~~l~~~ 118 (239)
T COG1579 108 LEDELAELMEE 118 (239)
T ss_pred HHHHHHHHHHH
Confidence 33333343333
No 116
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=26.25 E-value=5.2e+02 Score=23.78 Aligned_cols=90 Identities=21% Similarity=0.283 Sum_probs=53.3
Q ss_pred cchhHHHHHhhhhhhhhHHHHhhhcccCCCC-------------cCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 040075 86 HDSEAIYNELGRMRKETHNLELSLRRYTGDI-------------DLNSV--KLEELTQLEHQLECSVKKVRVRKMEI--L 148 (254)
Q Consensus 86 ~~~e~l~~e~~kLkke~~~L~~~~r~~~Ge~-------------dL~~L--s~~EL~~LE~~Le~~L~~VR~RK~~l--l 148 (254)
.+.+.++..+..|..+|..|+.+..++..+. ++..| .-.++..|...|............++ |
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~L 239 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSL 239 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888889899988887766655430 11111 01122334444444444433333333 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040075 149 RQQTDNLLRKEKMLEEENEQIFSLLKD 175 (254)
Q Consensus 149 ~~qi~~lkkk~~~l~een~~L~~~l~~ 175 (254)
..|+-.+++|.+.+.-||..|...+..
T Consensus 240 lsqivdlQ~r~k~~~~EnEeL~q~L~~ 266 (306)
T PF04849_consen 240 LSQIVDLQQRCKQLAAENEELQQHLQA 266 (306)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 456677788888888888888887753
No 117
>PRK15067 ethanolamine ammonia lyase large subunit; Provisional
Probab=26.11 E-value=33 Score=32.91 Aligned_cols=15 Identities=40% Similarity=0.720 Sum_probs=11.9
Q ss_pred CCCCCcccCCCCCCC
Q 040075 222 IPHYQPFRLQPTQPN 236 (254)
Q Consensus 222 ~p~~~~frlqp~qpn 236 (254)
.|.-++.||||+||-
T Consensus 153 l~G~ls~RlQPNhPT 167 (461)
T PRK15067 153 LPGTLSARLQPNHPT 167 (461)
T ss_pred CCceeeeecCCCCCC
Confidence 365568999999995
No 118
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=25.57 E-value=3.8e+02 Score=22.04 Aligned_cols=28 Identities=39% Similarity=0.462 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040075 148 LRQQTDNLLRKEKMLEEENEQIFSLLKD 175 (254)
Q Consensus 148 l~~qi~~lkkk~~~l~een~~L~~~l~~ 175 (254)
+.++...|..++..|+++|+.|..++..
T Consensus 87 ~~~e~k~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 87 WRQERKDLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4455566777788888888888866643
No 119
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=25.44 E-value=5.6e+02 Score=26.52 Aligned_cols=58 Identities=19% Similarity=0.315 Sum_probs=36.1
Q ss_pred eEEeCCCCCcc--eec---cccc--------cchhhhhh-hhhccCCCcEEEEEecCCCCcccccCCCchHHHHHHHhhh
Q 040075 8 IARIESRTNRQ--VTF---SKRR--------GGLLKKAR-ELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQA 73 (254)
Q Consensus 8 ik~Ien~~~Rq--vTf---sKRr--------~GL~KKA~-ELSvLCda~valIifS~~gk~~e~~s~~~s~~~ileRY~~ 73 (254)
|+-|.+.+.|. +.| -||. +.|+|+.. +-++-| -+++|+++|++ .+. ++++||..|-.
T Consensus 291 i~~~~d~s~~~~~~r~~i~~k~~~~~~~~~~~~l~k~t~l~~~~~~----n~~~~d~~~~p-~~~----~l~~il~~f~~ 361 (742)
T PRK05561 291 IADVRDESDRENPVRIVIEPKSNRVDPEALMNHLFATTDLESSYRV----NMNAIGLDGRP-RVK----GLKEILSEWLD 361 (742)
T ss_pred cccceeccCCCCCEEEEEEECCCcCCHHHHHHHHHHhcCcceeeee----eEEEEccCCEE-EEC----CHHHHHHHHHH
Confidence 66666777777 444 2444 25554432 223333 67889888986 443 48999999866
Q ss_pred h
Q 040075 74 A 74 (254)
Q Consensus 74 ~ 74 (254)
+
T Consensus 362 ~ 362 (742)
T PRK05561 362 H 362 (742)
T ss_pred H
Confidence 5
No 120
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=25.39 E-value=2.9e+02 Score=21.61 Aligned_cols=53 Identities=9% Similarity=0.133 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 120 SVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLL 173 (254)
Q Consensus 120 ~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l 173 (254)
++|++|+..+-...+..-... ..-.+++..++..+..+...+...-..|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (133)
T cd04787 57 GFSLKDIKEILSHADQGESPC-PMVRRLIEQRLAETERRIKELLKLRDRMQQAV 109 (133)
T ss_pred CCCHHHHHHHHhhhccCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888777655433221111 11234566667777777777666555555554
No 121
>PF14263 DUF4354: Domain of unknown function (DUF4354); PDB: 3NRF_B 3SB3_A.
Probab=25.39 E-value=26 Score=27.83 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=29.5
Q ss_pred eCCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccc
Q 040075 11 IESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEF 57 (254)
Q Consensus 11 Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~ 57 (254)
|.++.....||-=.-+-+-++.-+|+-+| ++.|++.||.+-.
T Consensus 41 v~~k~~ytktF~V~vaN~s~~~idLsk~C-----f~a~~~~gk~f~l 82 (124)
T PF14263_consen 41 VGGKSFYTKTFDVTVANLSDKDIDLSKMC-----FKAYSPDGKEFKL 82 (124)
T ss_dssp ETTEEEEEEEEEEEEEE-SSS-EE-TT-E-----EEEEETTS-EEEE
T ss_pred ecCccceEEEEEEEEecCCCCccccccch-----hhhccccCCEEEe
Confidence 44556677788888888999999999885 8999999997754
No 122
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=25.28 E-value=3.6e+02 Score=27.55 Aligned_cols=52 Identities=15% Similarity=0.256 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040075 124 EELTQLEHQLECSVKKVRVRKMEILR---QQTDNLLRKEKMLEEENEQIFSLLKD 175 (254)
Q Consensus 124 ~EL~~LE~~Le~~L~~VR~RK~~ll~---~qi~~lkkk~~~l~een~~L~~~l~~ 175 (254)
++|..|+++-+.-+...+.+..++-. +|++.||.-+..|++|++-|..+...
T Consensus 4 dkL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~ 58 (654)
T PF09798_consen 4 DKLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRS 58 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888887776654 57888999999999999999887743
No 123
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=25.17 E-value=3.8e+02 Score=25.83 Aligned_cols=73 Identities=14% Similarity=0.191 Sum_probs=37.5
Q ss_pred cccccCCCc--------hHHHHHHHhhhhcCCccCCCCCCcchhHHHHHhhhhhhhhHHHHhhhcccCCCCcCCCCCHHH
Q 040075 54 LTEFCSEST--------SIEEIIRRYQAAKGVRIPAGVSNHDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNSVKLEE 125 (254)
Q Consensus 54 ~~e~~s~~~--------s~~~ileRY~~~~~~~~~~~~~~~~~e~l~~e~~kLkke~~~L~~~~r~~~Ge~dL~~Ls~~E 125 (254)
.++|+.|.. ..-..|.+|+-+...... .+-.+...+..|.+++++|+..-. ..+. |+ -+|
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~fe~pi~ele~ki~el~~~~~-~~~~-~~----~~e 106 (431)
T PLN03230 39 EHEYPWPEKLPQGELTTGALKILNRFKPLKNKPKP------VTLPFEKPIVDLENRIDEVRELAN-KTGV-DF----SAQ 106 (431)
T ss_pred CCCCCCcccCCCCcccccHHHHHHhcCCCCCCCCC------CccchhhHHHHHHHHHHHHHhhhh-cccc-cH----HHH
Confidence 377777532 344577888766554332 111233456667777777654321 1122 33 256
Q ss_pred HHHHHHHHHHHHH
Q 040075 126 LTQLEHQLECSVK 138 (254)
Q Consensus 126 L~~LE~~Le~~L~ 138 (254)
+..||..++....
T Consensus 107 i~~l~~~~~~~~~ 119 (431)
T PLN03230 107 IAELEERYDQVRR 119 (431)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666554333
No 124
>TIGR01410 tatB twin arginine-targeting protein translocase TatB. This model represents the TatB protein of a Sec-independent system for transporting folded proteins, often with a bound redox cofactor, across the bacterial inner membrane. TatC is the multiple membrane spanning component. TatB, like the related TatA/E proteins, appears to span the membrane one time. The tat system recognizes proteins with an elongated signal sequence containing a conserved R-R in a motif approximated by RRxFLK N-terminal to the transmembrane helix. TIGRFAMs model TIGR01409 describes this twin-Arg signal sequence. A similar system, termed Delta-pH-dependent transport, operates on chloroplast-encoded proteins.
Probab=24.86 E-value=22 Score=25.90 Aligned_cols=29 Identities=14% Similarity=0.376 Sum_probs=21.0
Q ss_pred EEEEEecCCCCcccccCCCchHHHHHHHhhhhc
Q 040075 43 IGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAK 75 (254)
Q Consensus 43 valIifS~~gk~~e~~s~~~s~~~ileRY~~~~ 75 (254)
|++|||+| .|+++..- ++-+.+.++++..
T Consensus 14 vallv~GP-~kLP~~~r---~~G~~i~~~r~~~ 42 (80)
T TIGR01410 14 VALVVLGP-ERLPVAIR---AVGKFVRRLRGMA 42 (80)
T ss_pred HHHheECc-hHHHHHHH---HHHHHHHHHHHhh
Confidence 67899988 78888764 5666777766654
No 125
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=24.84 E-value=3e+02 Score=20.99 Aligned_cols=53 Identities=15% Similarity=0.164 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 120 SVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLL 173 (254)
Q Consensus 120 ~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l 173 (254)
+++++|+..+-.....+-... ....+++.++++.+..+...|......|...+
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (123)
T cd04770 57 GFSLAEIRELLSLRDDGAAPC-AEVRALLEEKLAEVEAKIAELQALRAELAGLL 109 (123)
T ss_pred CCCHHHHHHHHHhhhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777665443211001 12234555566666666666555554554433
No 126
>PHA02109 hypothetical protein
Probab=24.71 E-value=3.6e+02 Score=22.87 Aligned_cols=43 Identities=28% Similarity=0.431 Sum_probs=23.9
Q ss_pred cccCCCCcCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 110 RRYTGDIDLNSVK--LEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEE 165 (254)
Q Consensus 110 r~~~Ge~dL~~Ls--~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~ee 165 (254)
+...|+ .|++|+ ++|+..|+..|| +|..+.-.++-|..++..+
T Consensus 178 ~~~t~~-~L~~~~~~L~~I~~L~~ki~------------~LS~E~~Q~~~Ki~N~R~~ 222 (233)
T PHA02109 178 RSHTGE-NLEGLTDKLKQISELTIKLE------------ALSDEACQVKHKILNLRAE 222 (233)
T ss_pred hccchh-hhhhhhHHHHhhHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
Confidence 344567 676665 555555555543 4555555566665555443
No 127
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=24.55 E-value=1.2e+02 Score=24.67 Aligned_cols=39 Identities=18% Similarity=0.173 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 133 LECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSL 172 (254)
Q Consensus 133 Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~ 172 (254)
|=.++..=|.-|.++ ..+|+.|+.|...|.|....|+..
T Consensus 97 iY~d~~aWk~hr~~I-D~eIe~Lq~Ki~~LKeiR~hLk~~ 135 (145)
T PF12548_consen 97 IYQDPKAWKDHRLHI-DHEIETLQDKIKNLKEIRGHLKKK 135 (145)
T ss_pred hhcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444455443 678999999999999999988865
No 128
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=24.45 E-value=2.2e+02 Score=31.17 Aligned_cols=110 Identities=16% Similarity=0.235 Sum_probs=66.9
Q ss_pred cccccchhhhhhhhhccCCCcEEEEEecCCCCcccccCCCchHHHHHHHhhhhcC-CccCCCCCCcchhHHHHHhhhhhh
Q 040075 22 SKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAKG-VRIPAGVSNHDSEAIYNELGRMRK 100 (254)
Q Consensus 22 sKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~~~s~~~ileRY~~~~~-~~~~~~~~~~~~e~l~~e~~kLkk 100 (254)
.+|..-|+.+|.||- .+|-+-.|.|.-..|++-|..-+..-. .... ..+.+.+...++.|++
T Consensus 1177 ~~rt~rl~~~A~~l~-------------~tGv~gay~s~f~~me~kl~~ir~il~~~svs----~~~i~~l~~~~~~lr~ 1239 (1758)
T KOG0994|consen 1177 ALRTHRLINRAKELK-------------QTGVLGAYASRFLDMEEKLEEIRAILSAPSVS----AEDIAQLASATESLRR 1239 (1758)
T ss_pred HHHHHHHHHHHHHhh-------------hccCchhhHhHHHHHHHHHHHHHHHhcCCCcc----HHHHHHHHHHHHHHHH
Confidence 356667788888875 234444555543457766666655432 2222 4456677777777777
Q ss_pred hhHHHHhhhcccCCC----CcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 101 ETHNLELSLRRYTGD----IDLNSVKLEELTQLEHQLECSVKKVRVRKMEIL 148 (254)
Q Consensus 101 e~~~L~~~~r~~~Ge----~dL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll 148 (254)
++..++..+....-. .+-.+++-.||..|+...+....-+++.+.++.
T Consensus 1240 ~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~ 1291 (1758)
T KOG0994|consen 1240 QLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLE 1291 (1758)
T ss_pred HHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776666554433221 012346678999999888877777777666554
No 129
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=24.36 E-value=6.5e+02 Score=25.89 Aligned_cols=94 Identities=20% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhhhHHHHhhhccc-------------CCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 040075 90 AIYNELGRMRKETHNLELSLRRY-------------TGDIDLNSVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDN-- 154 (254)
Q Consensus 90 ~l~~e~~kLkke~~~L~~~~r~~-------------~Ge~dL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~-- 154 (254)
.+..++..++.+++.|+..+-.+ +-. .+.|.+..-..+|.-|..-|..|.+-=..-...
T Consensus 457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEk------rL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~ 530 (697)
T PF09726_consen 457 SLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEK------RLAEERRQRASLEKQLQEERKARKEEEEKAARALA 530 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccc
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 040075 155 ------------LLRKEKMLEEENEQIFSLLKDNNNQMAWEQQQQQQ 189 (254)
Q Consensus 155 ------------lkkk~~~l~een~~L~~~l~~~~~~~~~~~~~~~~ 189 (254)
++.+.+.|+.|-+.|+.++...+.+....+.+-++
T Consensus 531 ~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~ 577 (697)
T PF09726_consen 531 QAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQE 577 (697)
T ss_pred cchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 130
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR. SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulfur cluster activates SoxR. The physiological role in E. coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In E. coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.
Probab=24.33 E-value=2e+02 Score=23.08 Aligned_cols=54 Identities=11% Similarity=0.041 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 120 SVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLL 173 (254)
Q Consensus 120 ~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l 173 (254)
+++++++..+-..+...-.........++.++...+..+...|...-..|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ki~~L~~~~~~L~~~~ 110 (142)
T TIGR01950 57 GIPLATIGEALAVLPEGRTPTADDWARLSSQWREELDERIDQLNALRDQLDGCI 110 (142)
T ss_pred CCCHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888776543211111122224555666666666666666655555444
No 131
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=24.29 E-value=2.1e+02 Score=21.86 Aligned_cols=31 Identities=16% Similarity=0.297 Sum_probs=15.4
Q ss_pred CcchhHHHHHhhhhhh----hhHHHHhhhcccCCC
Q 040075 85 NHDSEAIYNELGRMRK----ETHNLELSLRRYTGD 115 (254)
Q Consensus 85 ~~~~e~l~~e~~kLkk----e~~~L~~~~r~~~Ge 115 (254)
+..|+.|..|+..+.+ ..+.+..--|.+.|.
T Consensus 11 ~aEYe~LKEEi~~l~~~~~~~~e~l~~i~r~f~g~ 45 (99)
T PF13758_consen 11 EAEYEGLKEEIEALPEDDDATREDLLRIRRDFGGS 45 (99)
T ss_pred HHHHHHHHHHHHhccccCCCCHHHHHHHHHhcCcc
Confidence 5556666666666632 223333333455555
No 132
>PF06751 EutB: Ethanolamine ammonia lyase large subunit (EutB); InterPro: IPR010628 This family consists of several bacterial ethanolamine ammonia lyase large subunit (EutB) proteins. Ethanolamine ammonia-lyase is a bacterial enzyme that catalyses the adenosylcobalamin-dependent conversion of certain vicinal amino alcohols to oxo compounds and ammonia. The enzyme is a heterodimer composed of subunits of Mr approximately 55,000 (EutB) and 35,000 (EutC) [].; GO: 0008851 ethanolamine ammonia-lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3ABQ_C 3ABS_C 3AO0_A 3ABR_A 3ABO_C 3ANY_A 2QEZ_B.
Probab=24.12 E-value=24 Score=33.64 Aligned_cols=15 Identities=40% Similarity=0.711 Sum_probs=6.9
Q ss_pred CCCCCcccCCCCCCC
Q 040075 222 IPHYQPFRLQPTQPN 236 (254)
Q Consensus 222 ~p~~~~frlqp~qpn 236 (254)
.|..++.||||+||-
T Consensus 143 ~~G~ls~RlQPNhPT 157 (444)
T PF06751_consen 143 LPGRLSSRLQPNHPT 157 (444)
T ss_dssp -TTB-EEEE----TT
T ss_pred CCCeeeeecCCCCCC
Confidence 355568999999995
No 133
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=24.12 E-value=62 Score=30.55 Aligned_cols=41 Identities=32% Similarity=0.464 Sum_probs=28.0
Q ss_pred hhhhccCCCcE--EEEEecCCCCcccccCCC---chHHHHHHHhhhhc
Q 040075 33 RELSVLCDAEI--GLIIFSCTGKLTEFCSES---TSIEEIIRRYQAAK 75 (254)
Q Consensus 33 ~ELSvLCda~v--alIifS~~gk~~e~~s~~---~s~~~ileRY~~~~ 75 (254)
.-|||+||-+| |||--.++|=- |..|- +++++++.-|+..+
T Consensus 367 yalSV~~~~~V~HClIy~tatG~G--Fa~pyn~y~tlk~lV~hY~h~S 412 (464)
T KOG4637|consen 367 YALSVVHDGEVKHCLIYQTATGFG--FAEPYNLYSTLKELVLHYQHTS 412 (464)
T ss_pred eEEEEEECCceeeeEEeecccccc--ccchhHHHHHHHHHHHHHhhhh
Confidence 46999999887 56554555533 33322 47999999998764
No 134
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=24.11 E-value=2.4e+02 Score=19.88 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040075 147 ILRQQTDNLLRKEKMLEEENEQIFSLLKD 175 (254)
Q Consensus 147 ll~~qi~~lkkk~~~l~een~~L~~~l~~ 175 (254)
.+..++..++++...++.+|..|+.++..
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888999999999999999988854
No 135
>PF04521 Viral_P18: ssRNA positive strand viral 18kD cysteine rich protein; InterPro: IPR007609 This family represents the 18kDa cysteine-rich protein from ssRNA positive strand viruses.
Probab=23.96 E-value=66 Score=25.35 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=17.0
Q ss_pred eeccccccchhhhhhhhhccC
Q 040075 19 VTFSKRRGGLLKKARELSVLC 39 (254)
Q Consensus 19 vTfsKRr~GL~KKA~ELSvLC 39 (254)
+.++|+|..++||-.+-.|-|
T Consensus 5 ~~~rk~R~~~y~~lgl~~vkC 25 (120)
T PF04521_consen 5 RCVRKYRASVYKKLGLSAVKC 25 (120)
T ss_pred HHHHHHHHHHHHHcCCeeeee
Confidence 568999999999988876644
No 136
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=23.71 E-value=4.5e+02 Score=25.71 Aligned_cols=26 Identities=8% Similarity=0.204 Sum_probs=17.3
Q ss_pred HHHHHhhhhhhhhHHHHhhhcccCCC
Q 040075 90 AIYNELGRMRKETHNLELSLRRYTGD 115 (254)
Q Consensus 90 ~l~~e~~kLkke~~~L~~~~r~~~Ge 115 (254)
.+..-+.+|+..|.+-+..|..+-+.
T Consensus 314 aLNEvL~kLk~tn~kQq~~IqdLq~s 339 (527)
T PF15066_consen 314 ALNEVLQKLKHTNRKQQNRIQDLQCS 339 (527)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhc
Confidence 45666778888777777666655443
No 137
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=23.10 E-value=2.7e+02 Score=21.06 Aligned_cols=50 Identities=16% Similarity=0.235 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 120 SVKLEELTQLEHQLECSV---KKVRVRKMEILRQQTDNLLRKEKMLEEENEQIF 170 (254)
Q Consensus 120 ~Ls~~EL~~LE~~Le~~L---~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~ 170 (254)
++|++|+..+-...+..- ... ....+++.+++..+..+...|...-..|.
T Consensus 56 G~sl~eI~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~ 108 (112)
T cd01282 56 GLTLEEIREFLPCLRGGEPTFRPC-PDLLAVLRRELARIDRQIADLTRSRDRLD 108 (112)
T ss_pred CCCHHHHHHHHHHhhCCCccCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777766654433221 111 11224455555555555555554444443
No 138
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=23.04 E-value=46 Score=29.03 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=14.0
Q ss_pred CcEEEEEecCCCCcccc
Q 040075 41 AEIGLIIFSCTGKLTEF 57 (254)
Q Consensus 41 a~valIifS~~gk~~e~ 57 (254)
-|-||-||||+|.++..
T Consensus 4 ydraltvFSPDGhL~QV 20 (249)
T KOG0183|consen 4 YDRALTVFSPDGHLFQV 20 (249)
T ss_pred cccceEEECCCCCEEee
Confidence 36689999999999843
No 139
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=22.89 E-value=4e+02 Score=24.40 Aligned_cols=8 Identities=13% Similarity=-0.135 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 040075 166 NEQIFSLL 173 (254)
Q Consensus 166 n~~L~~~l 173 (254)
...+...|
T Consensus 136 la~~t~~L 143 (301)
T PF06120_consen 136 LAEATREL 143 (301)
T ss_pred HHHHHHHH
Confidence 33333333
No 140
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=22.46 E-value=1e+02 Score=26.66 Aligned_cols=47 Identities=15% Similarity=0.269 Sum_probs=36.0
Q ss_pred cchhhhh----hhhhccCCCcEEEEEecCC---CCcccccCCCchHHHHHHHhhhh
Q 040075 26 GGLLKKA----RELSVLCDAEIGLIIFSCT---GKLTEFCSESTSIEEIIRRYQAA 74 (254)
Q Consensus 26 ~GL~KKA----~ELSvLCda~valIifS~~---gk~~e~~s~~~s~~~ileRY~~~ 74 (254)
+-|+.|- .|++|=||-++.+++.+|+ +....|+. ..++.|+..|+..
T Consensus 35 ~rllrkl~~~~de~~trvGqqavvl~~~p~kp~~~f~vfGa--~pL~~vv~~~~~~ 88 (214)
T PF10491_consen 35 TRLLRKLRQTIDEYTTRVGQQAVVLCCTPSKPNPVFKVFGA--APLENVVRNLKPV 88 (214)
T ss_pred HHHHHHHHHHHHHHHHhhhceeEEEEecCCCCCCceeeecc--hhHHHHHHHHHHH
Confidence 4455554 6999999999999999975 33446776 6799999988764
No 141
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=22.39 E-value=6.7e+02 Score=28.08 Aligned_cols=63 Identities=16% Similarity=0.351 Sum_probs=37.7
Q ss_pred ccceEEeCCCCCcc-eecc---ccc-------cchhhhhh-hhhccCCCcEEEEEecCCCCcccccCCCchHHHHHHHhh
Q 040075 5 KIEIARIESRTNRQ-VTFS---KRR-------GGLLKKAR-ELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQ 72 (254)
Q Consensus 5 Ki~ik~Ien~~~Rq-vTfs---KRr-------~GL~KKA~-ELSvLCda~valIifS~~gk~~e~~s~~~s~~~ileRY~ 72 (254)
+-.|+-|.+.+.+. |.|- ||. +||+|+.. +-++-| --+++|.+.|+++.|.+ +.+||+.|-
T Consensus 914 ~~~I~d~~d~s~~~~v~~~I~l~~~~~~~~~~~~L~k~~kL~~s~~~---~Nm~~~d~~g~i~~~~~----~~~Il~~f~ 986 (1388)
T PTZ00108 914 KDVIVDYRDYSTANTVHFTVKLNDGVLEQWEEEGIEKVFKLKSTIST---TNMVLFDENGKIKKYSD----ALDILKEFY 986 (1388)
T ss_pred CCcceeeeeccCCCceEEEEEECCCcCHHHHHHHHHHhcCCceeecc---eeEEEEeCCCCcceeCC----HHHHHHHHH
Confidence 34566666655543 3332 222 35665543 222222 25788999999999976 778888876
Q ss_pred hh
Q 040075 73 AA 74 (254)
Q Consensus 73 ~~ 74 (254)
..
T Consensus 987 ~~ 988 (1388)
T PTZ00108 987 LV 988 (1388)
T ss_pred HH
Confidence 53
No 142
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=22.35 E-value=2.6e+02 Score=19.04 Aligned_cols=44 Identities=34% Similarity=0.408 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 122 KLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLK 174 (254)
Q Consensus 122 s~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l~ 174 (254)
..+.-..|+..++.....+.+| ..+......|+++|..|+..+.
T Consensus 14 ~~~~W~~L~~~l~rY~~vL~~R---------~~l~~e~~~L~~qN~eLr~lLk 57 (60)
T PF14775_consen 14 KIRLWDALENFLKRYNKVLLDR---------AALIQEKESLEQQNEELRSLLK 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666665444443333 3344445678889999988774
No 143
>PRK13824 replication initiation protein RepC; Provisional
Probab=22.33 E-value=1.3e+02 Score=28.71 Aligned_cols=96 Identities=18% Similarity=0.224 Sum_probs=56.2
Q ss_pred hhccCCCcEEEEEe--cCCCCcccccCCC--------chHHHHHHHhhhhcCCccCCCCCCcchhHHHHHhhhhhhhhHH
Q 040075 35 LSVLCDAEIGLIIF--SCTGKLTEFCSES--------TSIEEIIRRYQAAKGVRIPAGVSNHDSEAIYNELGRMRKETHN 104 (254)
Q Consensus 35 LSvLCda~valIif--S~~gk~~e~~s~~--------~s~~~ileRY~~~~~~~~~~~~~~~~~e~l~~e~~kLkke~~~ 104 (254)
|+.|.+ ++||+. ||+||=|-.-... -+..-++.||........ ..+.-..++..++.++..
T Consensus 104 la~Lve--aGLI~rrDSpNGKRyarr~~~G~i~~AfGfDLsPL~~R~~El~~~A~-------~~~ae~~~~r~lr~~it~ 174 (404)
T PRK13824 104 LAALVE--AGLIIRRDSPNGKRYARKGRGGEIEEAFGFDLAPLLARAEEFEALAE-------QVAAERKALRRLRERLTL 174 (404)
T ss_pred HHHHHH--CCCeEeecCCCCcccceeCCCCceeeeeccchHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 445554 456666 7899987553321 146677777765432211 122335566777778888
Q ss_pred HHhhhcccCCC---CcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 040075 105 LELSLRRYTGD---IDLNSVKLEELTQLEHQLECSVKKVRVR 143 (254)
Q Consensus 105 L~~~~r~~~Ge---~dL~~Ls~~EL~~LE~~Le~~L~~VR~R 143 (254)
+++.++.+.-. ..+.+ +...++..+...+..++.+
T Consensus 175 ~rRdi~~li~~a~~~~~~~----~w~~~~~~~~~i~~~l~R~ 212 (404)
T PRK13824 175 CRRDIAKLIEAAIEEGVPG----DWEGVEQRFRAIVARLPRR 212 (404)
T ss_pred HHHHHHHHHHHHHhccCCC----cHHHHHHHHHHHHHHcCCC
Confidence 87777765421 02221 4777777777777777644
No 144
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=22.17 E-value=3.4e+02 Score=21.02 Aligned_cols=53 Identities=17% Similarity=0.145 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 120 SVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLL 173 (254)
Q Consensus 120 ~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l 173 (254)
++|++|+..+-...+..-... ..-..++.+++..+..+...|+.....|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~l~~~~ 109 (127)
T cd01108 57 GFSLEEIRELLALWRDPSRAS-ADVKALALEHIAELERKIAELQAMRRTLQQLA 109 (127)
T ss_pred CCCHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777654332211111 11224566666677666666665555555443
No 145
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=22.00 E-value=54 Score=31.17 Aligned_cols=60 Identities=22% Similarity=0.268 Sum_probs=46.1
Q ss_pred eEEeCCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccccCCCchHHHHHHHhhhh
Q 040075 8 IARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAA 74 (254)
Q Consensus 8 ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~~~s~~~ileRY~~~ 74 (254)
|+++-+...-..||..|+.| ||+++||+.+-+.+|-...-...|+++ ....+--..|++.
T Consensus 18 i~~~~d~~~ps~~~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~i~q~~a~~q~~ 77 (412)
T COG5068 18 IQGDSDANIPSNTINRLSPG------ELSQQNDGKFDVMIFDSKHSVRVYSNE-EPIEQTKAQLQKF 77 (412)
T ss_pred cccccccCCccccccccCcc------cchhhccCCcccccccccccccccCCc-ccccccHHHHhhh
Confidence 77888888888999999999 999999999998888776666667664 4444444445544
No 146
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=21.84 E-value=3.2e+02 Score=19.88 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040075 148 LRQQTDNLLRKEKMLEEENEQIFSLLKD 175 (254)
Q Consensus 148 l~~qi~~lkkk~~~l~een~~L~~~l~~ 175 (254)
|.+.|+..+.....|..+|..|..-+..
T Consensus 35 L~~Rve~Vk~E~~kL~~EN~~Lq~YI~n 62 (80)
T PF10224_consen 35 LSDRVEEVKEENEKLESENEYLQQYIGN 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666778888888877743
No 147
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=21.73 E-value=3.4e+02 Score=21.48 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 120 SVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLL 173 (254)
Q Consensus 120 ~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l 173 (254)
+++++|+..+-...+..-... ....+++.+++..+..+...|+..-..|...+
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (135)
T PRK10227 57 GFNLEESGELVNLFNDPQRHS-ADVKRRTLEKVAEIERHIEELQSMRDQLLALA 109 (135)
T ss_pred CCCHHHHHHHHHhhccCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888777665433211111 11124456666677777777766666666544
No 148
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=21.57 E-value=4.4e+02 Score=21.36 Aligned_cols=53 Identities=25% Similarity=0.312 Sum_probs=27.6
Q ss_pred HHHHHhhhhhhhhHHHHhhhcccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 040075 90 AIYNELGRMRKETHNLELSLRRYTGDIDLNSVKLEELTQLEHQLECSVKKVRVRK 144 (254)
Q Consensus 90 ~l~~e~~kLkke~~~L~~~~r~~~Ge~dL~~Ls~~EL~~LE~~Le~~L~~VR~RK 144 (254)
.+...+..++++++.++..+..+.+. -...+.+|...++.......+..+.||
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l~~~--~~~vs~ee~~~~~~~~~~~~k~w~kRK 165 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKLRSG--SKPVSPEEKEKLEKEYKKWRKEWKKRK 165 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555554444432 222555566666655555555555554
No 149
>PTZ00370 STEVOR; Provisional
Probab=21.55 E-value=1.6e+02 Score=26.80 Aligned_cols=43 Identities=21% Similarity=0.437 Sum_probs=27.8
Q ss_pred eEEeCCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccccCCCchHHHHHHHhhh
Q 040075 8 IARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQA 73 (254)
Q Consensus 8 ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~~~s~~~ileRY~~ 73 (254)
+..|.|.+.|. |-+-| .||..|. ++| .|-++ +.|++|++.|..
T Consensus 26 ~~li~n~t~~~-t~~sR------------~L~Ecel----~~p-----~YdND-pemK~i~d~~n~ 68 (296)
T PTZ00370 26 VSLIQNNTQRT-TIKSR------------LLAQTQN----HNP-----HYHND-PELKEIIDKMNE 68 (296)
T ss_pred cccccCCCccc-cccee------------ehhhhhc----CCC-----CCCCc-HHHHHHHHHHhH
Confidence 45677777765 33223 4777665 444 46554 899999999865
No 150
>KOG3004 consensus Meiotic chromosome segregation protein [Cell cycle control, cell division, chromosome partitioning]
Probab=21.51 E-value=1.1e+02 Score=27.87 Aligned_cols=93 Identities=19% Similarity=0.200 Sum_probs=53.2
Q ss_pred CccccceEEeCCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccccCCCchHHHHHHHhhhhcCCccCC
Q 040075 2 GRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAKGVRIPA 81 (254)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~~~s~~~ileRY~~~~~~~~~~ 81 (254)
||+++.+.+|+--+.+..++-|-..+| +++. -+| -..||-++|.. .+.+|.+|+.-.-.-..
T Consensus 53 ~rKR~~~~~~~~lsa~~L~s~~Gip~l-R~~~-----k~~-------k~kgKg~e~~d----L~~llr~y~~WgH~lfP- 114 (305)
T KOG3004|consen 53 GRKRAVRVKSPKLSAETLISEKGIPAL-RDCF-----KKA-------KFKGKGHEYID----LKELLRSYQHWGHELFP- 114 (305)
T ss_pred cccccccccccccchhhhcCccCchHH-HHHH-----hhc-------CcCCCCCcccC----HHHHHHHHHHHHHhhcc-
Confidence 677777777888888888888888874 2221 111 13577777754 99999999753211111
Q ss_pred CCCCcchhHHHHHhhhhhhhhHHHHhhhcccCCC
Q 040075 82 GVSNHDSEAIYNELGRMRKETHNLELSLRRYTGD 115 (254)
Q Consensus 82 ~~~~~~~e~l~~e~~kLkke~~~L~~~~r~~~Ge 115 (254)
-...+..-..+.+|-++..--...+|+.+|.
T Consensus 115 ---k~kf~D~i~~~etLGk~r~vkv~~~r~rLg~ 145 (305)
T KOG3004|consen 115 ---KAKFDDFINRVETLGKKREVKVDLLRYRLGY 145 (305)
T ss_pred ---cchhHHHHHHHHhhccccchhhhhhHHHhcc
Confidence 2223334445555555333223344555554
No 151
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=21.27 E-value=2.6e+02 Score=26.04 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=27.0
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 117 DLNSVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLE 163 (254)
Q Consensus 117 dL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~ 163 (254)
.|++.|++|+-.|.+. ++-|..+++.|+.++..|+
T Consensus 25 ~~~~~~~~e~~aLr~E------------N~~LKkEN~~Lk~eVerLE 59 (420)
T PF07407_consen 25 ELEGVSIDENFALRME------------NHSLKKENNDLKIEVERLE 59 (420)
T ss_pred cccccchhhhhhHHHH------------hHHHHHHHHHHHHHHHHHH
Confidence 6889999999888665 3456777788888887773
No 152
>PHA01750 hypothetical protein
Probab=21.00 E-value=3.1e+02 Score=19.35 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 040075 151 QTDNLLRKEKMLEEENEQIF 170 (254)
Q Consensus 151 qi~~lkkk~~~l~een~~L~ 170 (254)
|++.++.|..++++.-+.+.
T Consensus 50 ei~~~kikqDnl~~qv~eik 69 (75)
T PHA01750 50 EIEELKIKQDELSRQVEEIK 69 (75)
T ss_pred HHHHHHHhHHHHHHHHHHHH
Confidence 33333333333333333333
No 153
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=20.68 E-value=5.7e+02 Score=25.41 Aligned_cols=85 Identities=21% Similarity=0.236 Sum_probs=47.3
Q ss_pred hhHHHHHhhhhhhhhHHHHhhhcccCCC--------CcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH
Q 040075 88 SEAIYNELGRMRKETHNLELSLRRYTGD--------IDLNSVKLEELTQLEHQLECSVKKVRVRKMEI---------LRQ 150 (254)
Q Consensus 88 ~e~l~~e~~kLkke~~~L~~~~r~~~Ge--------~dL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~l---------l~~ 150 (254)
.+.++..+.-++++|..|+-+.-++.-| -.+-++-+++|++...++-..-..+-.+-.++ |..
T Consensus 161 ~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLls 240 (596)
T KOG4360|consen 161 LEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLS 240 (596)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777887777655444322 02233456666666666555544433333332 345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 040075 151 QTDNLLRKEKMLEEENEQIFSL 172 (254)
Q Consensus 151 qi~~lkkk~~~l~een~~L~~~ 172 (254)
||-.+++|++.+.-++..|..-
T Consensus 241 ql~d~qkk~k~~~~Ekeel~~~ 262 (596)
T KOG4360|consen 241 QLVDLQKKIKYLRHEKEELDEH 262 (596)
T ss_pred HHHhhHHHHHHHHHHHHHHHHH
Confidence 5666777777766555544433
No 154
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=20.55 E-value=7.9e+02 Score=25.43 Aligned_cols=23 Identities=39% Similarity=0.404 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 040075 153 DNLLRKEKMLEEENEQIFSLLKD 175 (254)
Q Consensus 153 ~~lkkk~~~l~een~~L~~~l~~ 175 (254)
+.+|-.++.|+|+...|..++++
T Consensus 124 E~~Khei~rl~Ee~~~l~~qlee 146 (717)
T PF09730_consen 124 EGLKHEIKRLEEEIELLNSQLEE 146 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677788888888888776
No 155
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=20.52 E-value=5.2e+02 Score=25.76 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 040075 151 QTDNLLRKEKMLEEENEQIFSL 172 (254)
Q Consensus 151 qi~~lkkk~~~l~een~~L~~~ 172 (254)
++.+++.+.+.++++...|+..
T Consensus 156 e~~~~krr~~~le~e~~~Lk~e 177 (546)
T KOG0977|consen 156 EINTLKRRIKALEDELKRLKAE 177 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554444444433
No 156
>smart00415 HSF heat shock factor.
Probab=20.34 E-value=65 Score=24.32 Aligned_cols=39 Identities=18% Similarity=0.266 Sum_probs=28.4
Q ss_pred ccCCCcEE-EEEecCCCCcccccCCCchHHHHHHHhhhhc
Q 040075 37 VLCDAEIG-LIIFSCTGKLTEFCSESTSIEEIIRRYQAAK 75 (254)
Q Consensus 37 vLCda~va-lIifS~~gk~~e~~s~~~s~~~ileRY~~~~ 75 (254)
+|.|.+.. +|-.+++|+.+....+..-.+.|+.+|=+.+
T Consensus 12 ~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~ 51 (105)
T smart00415 12 LVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHN 51 (105)
T ss_pred HHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCC
Confidence 45677776 8889999998887765445667888875443
No 157
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=20.32 E-value=6e+02 Score=23.52 Aligned_cols=72 Identities=18% Similarity=0.205 Sum_probs=36.1
Q ss_pred HHHHHhhhhhhhhHHHHhhhcccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 90 AIYNELGRMRKETHNLELSLRRYTGDIDLNSVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQI 169 (254)
Q Consensus 90 ~l~~e~~kLkke~~~L~~~~r~~~Ge~dL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L 169 (254)
.|..+|+--+++|..|.+..|+-.-| ++-|.+--..||.++-.--+. .+-+..++++...|.||.+.|
T Consensus 11 EL~kQiEIcqEENkiLdK~hRQKV~E-------VEKLsqTi~ELEEaiLagGaa-----aNavrdYqrq~~elneEkrtL 78 (351)
T PF07058_consen 11 ELMKQIEICQEENKILDKMHRQKVLE-------VEKLSQTIRELEEAILAGGAA-----ANAVRDYQRQVQELNEEKRTL 78 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcchH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 35555666667777777777765554 455555444454443221111 122234444444444444444
Q ss_pred HHHH
Q 040075 170 FSLL 173 (254)
Q Consensus 170 ~~~l 173 (254)
-++|
T Consensus 79 eREL 82 (351)
T PF07058_consen 79 EREL 82 (351)
T ss_pred HHHH
Confidence 4444
No 158
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=20.31 E-value=4.2e+02 Score=22.71 Aligned_cols=53 Identities=23% Similarity=0.296 Sum_probs=31.3
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 040075 123 LEELTQLEHQL-ECSVKKVRVRKMEILRQ--------QTDNLLRKEKMLEEENEQIFSLLKD 175 (254)
Q Consensus 123 ~~EL~~LE~~L-e~~L~~VR~RK~~ll~~--------qi~~lkkk~~~l~een~~L~~~l~~ 175 (254)
+.|=..||..+ +..+..+-.+...-+.. -+..+..-.+.+..||..|+..+..
T Consensus 113 l~EK~~LEke~~e~~i~~l~e~a~~el~~k~~ale~~A~~~l~e~~~~i~~EN~~L~k~L~~ 174 (206)
T PF14988_consen 113 LQEKARLEKEASELKILQLGERAHKELKKKAQALELAAKKSLDEFTRSIKRENQQLRKELLQ 174 (206)
T ss_pred HHHHHHHHHHHHHhhHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555677766 55555444444444332 2344555566777888888888754
No 159
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=20.25 E-value=7e+02 Score=26.28 Aligned_cols=12 Identities=25% Similarity=0.390 Sum_probs=7.8
Q ss_pred ecCCCCcccccC
Q 040075 48 FSCTGKLTEFCS 59 (254)
Q Consensus 48 fS~~gk~~e~~s 59 (254)
|-+-|++-.|..
T Consensus 140 ~~~q~~~~~~~~ 151 (1179)
T TIGR02168 140 IIEQGKISEIIE 151 (1179)
T ss_pred heecccHHHHHc
Confidence 446677777763
No 160
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=20.21 E-value=59 Score=27.39 Aligned_cols=16 Identities=6% Similarity=0.320 Sum_probs=9.3
Q ss_pred chHHHHHHHhhhhcCC
Q 040075 62 TSIEEIIRRYQAAKGV 77 (254)
Q Consensus 62 ~s~~~ileRY~~~~~~ 77 (254)
+++.+++++|......
T Consensus 136 p~~~~l~~kY~~l~~~ 151 (199)
T PF10112_consen 136 PTAVKLLEKYAELESQ 151 (199)
T ss_pred hHHHHHHHHHHHHHhc
Confidence 3566666666655443
No 161
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=20.20 E-value=2.9e+02 Score=20.13 Aligned_cols=31 Identities=23% Similarity=0.206 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040075 145 MEILRQQTDNLLRKEKMLEEENEQIFSLLKD 175 (254)
Q Consensus 145 ~~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 175 (254)
...+..+++.++++...++++|..|.-+...
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~ 67 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIAT 67 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345567899999999999999999988754
No 162
>PRK15002 redox-sensitivie transcriptional activator SoxR; Provisional
Probab=20.08 E-value=3.1e+02 Score=22.37 Aligned_cols=54 Identities=11% Similarity=0.037 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 120 SVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLL 173 (254)
Q Consensus 120 ~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l 173 (254)
++|++|+..+-......-...-..-..++.++++.+..+...|...-..|...+
T Consensus 67 G~sL~eIk~ll~~~~~~~~~~~~~~~~ll~~k~~~l~~~I~~L~~~~~~L~~~i 120 (154)
T PRK15002 67 GIPLATIGEAFGVLPEGHTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCI 120 (154)
T ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778777665432221100111233445555556666555555544444433
Done!