Query 040075
Match_columns 254
No_of_seqs 268 out of 1657
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 07:17:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040075.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040075hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 1E-38 3.5E-43 231.0 0.8 74 2-77 1-74 (77)
2 3p57_A Myocyte-specific enhanc 100.0 5.9E-38 2E-42 232.5 0.6 76 2-79 1-76 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 3.1E-36 1E-40 227.0 -0.9 71 1-73 16-86 (100)
4 1hbx_A SRF, serum response fac 100.0 5.3E-36 1.8E-40 222.9 -2.8 70 1-72 10-79 (92)
5 1k6o_B SRF, serum response fac 100.0 1.9E-35 6.6E-40 224.0 -2.5 69 1-71 9-77 (103)
6 2w6a_A ARF GTPase-activating p 74.3 16 0.00055 24.2 8.8 51 120-170 9-61 (63)
7 1dip_A Delta-sleep-inducing pe 72.4 5.9 0.0002 27.4 4.5 27 146-172 18-44 (78)
8 2oa5_A Hypothetical protein BQ 69.6 22 0.00074 26.5 7.4 60 85-145 7-68 (110)
9 1dh3_A Transcription factor CR 66.2 23 0.00078 22.9 6.3 34 138-175 14-47 (55)
10 1t2k_D Cyclic-AMP-dependent tr 65.8 25 0.00086 23.0 6.9 38 137-178 13-50 (61)
11 2yy0_A C-MYC-binding protein; 65.1 14 0.00046 23.9 4.9 29 146-174 22-50 (53)
12 3nmd_A CGMP dependent protein 63.7 33 0.0011 23.6 7.7 52 117-175 14-65 (72)
13 2dgc_A Protein (GCN4); basic d 63.4 26 0.00088 23.3 6.3 35 137-175 21-55 (63)
14 1ci6_A Transcription factor AT 62.0 31 0.0011 22.8 6.9 38 137-178 14-51 (63)
15 2jee_A YIIU; FTSZ, septum, coi 59.1 44 0.0015 23.5 10.6 43 121-168 3-45 (81)
16 2wt7_A Proto-oncogene protein 59.1 35 0.0012 22.4 6.9 36 137-176 14-49 (63)
17 3na7_A HP0958; flagellar bioge 58.1 30 0.001 29.2 7.4 52 122-173 88-141 (256)
18 1jnm_A Proto-oncogene C-JUN; B 57.8 37 0.0013 22.2 6.6 36 137-176 13-48 (62)
19 1j1d_C Troponin I, TNI; THIN f 55.0 70 0.0024 24.6 9.0 33 116-148 53-85 (133)
20 2l16_A SEC-independent protein 54.6 0.43 1.5E-05 33.8 -4.1 30 43-76 16-45 (78)
21 1j1d_B Troponin T, TNT; THIN f 54.3 58 0.002 24.0 7.4 32 117-148 38-69 (106)
22 1a93_B MAX protein, coiled coi 52.5 26 0.00088 20.6 4.1 26 142-167 6-31 (34)
23 1ytz_T Troponin T; muscle, THI 51.6 57 0.002 24.1 7.0 32 117-148 38-69 (107)
24 3nrf_A APAG protein; structura 51.4 3.4 0.00012 30.7 0.2 42 11-57 21-62 (106)
25 3hnw_A Uncharacterized protein 50.0 85 0.0029 24.1 9.0 45 130-174 81-127 (138)
26 3twe_A Alpha4H; unknown functi 48.6 16 0.00054 19.6 2.5 21 90-110 5-25 (27)
27 3gp4_A Transcriptional regulat 44.7 93 0.0032 23.7 7.7 57 120-177 59-115 (142)
28 2dfs_A Myosin-5A; myosin-V, in 44.5 92 0.0031 32.1 9.6 25 153-177 1019-1043(1080)
29 3s9g_A Protein hexim1; cyclin 44.3 90 0.0031 22.7 7.8 56 117-173 26-88 (104)
30 3oja_A Leucine-rich immune mol 43.4 1.9E+02 0.0064 26.2 11.3 40 133-176 422-461 (487)
31 1gd2_E Transcription factor PA 43.3 71 0.0024 21.7 5.9 39 135-173 18-59 (70)
32 1j1e_C Troponin I, TNI; THIN f 42.8 1.2E+02 0.0041 24.5 8.2 35 114-148 51-85 (180)
33 1m1j_C Fibrinogen gamma chain; 42.0 1.8E+02 0.0063 26.4 10.3 57 50-112 11-67 (409)
34 2oqq_A Transcription factor HY 41.9 58 0.002 19.9 5.5 26 148-173 15-40 (42)
35 3tnu_B Keratin, type II cytosk 41.0 1.1E+02 0.0038 22.9 7.6 49 123-175 52-100 (129)
36 1go4_E MAD1 (mitotic arrest de 38.7 52 0.0018 24.0 4.9 29 150-178 12-40 (100)
37 1deb_A APC protein, adenomatou 38.0 77 0.0026 20.2 6.1 26 153-178 6-31 (54)
38 3tnu_A Keratin, type I cytoske 37.3 1.1E+02 0.0036 23.1 6.8 47 124-174 55-101 (131)
39 1m1j_B Fibrinogen beta chain; 36.7 2E+02 0.0067 26.7 9.7 44 27-75 55-98 (464)
40 1ci6_A Transcription factor AT 36.0 91 0.0031 20.4 5.8 30 145-174 32-61 (63)
41 1p9i_A Cortexillin I/GCN4 hybr 35.5 41 0.0014 18.6 2.9 21 155-175 4-24 (31)
42 2l5g_A GPS2 protein, G protein 35.1 57 0.0019 19.4 3.7 22 149-170 14-35 (38)
43 1gk7_A Vimentin; intermediate 35.0 73 0.0025 19.0 5.5 27 147-173 10-36 (39)
44 1fxk_A Prefoldin; archaeal pro 32.8 39 0.0013 24.1 3.5 26 148-173 77-102 (107)
45 1kaf_A Transcription regulator 32.7 12 0.0004 27.8 0.6 53 6-75 23-76 (108)
46 1a92_A Delta antigen; leucine 32.2 96 0.0033 19.5 5.3 26 145-170 16-41 (50)
47 2ky6_A Mediator of RNA polymer 32.1 55 0.0019 26.1 4.4 39 36-74 116-160 (166)
48 2qez_A Ethanolamine ammonia-ly 31.1 15 0.00052 33.7 1.1 15 222-236 154-168 (455)
49 3na7_A HP0958; flagellar bioge 30.9 2.3E+02 0.0079 23.5 9.5 48 64-115 72-119 (256)
50 1t2k_D Cyclic-AMP-dependent tr 30.7 1.1E+02 0.0037 19.7 5.5 28 146-173 32-59 (61)
51 1go4_E MAD1 (mitotic arrest de 30.3 13 0.00044 27.3 0.4 26 90-115 23-50 (100)
52 4dnd_A Syntaxin-10, SYN10; str 30.0 94 0.0032 23.6 5.4 55 90-145 71-126 (130)
53 1gu4_A CAAT/enhancer binding p 29.3 1.4E+02 0.0048 20.6 6.9 26 153-178 39-64 (78)
54 3gpv_A Transcriptional regulat 28.9 1.9E+02 0.0065 21.9 7.4 55 120-175 73-127 (148)
55 3abq_A Ethanolamine ammonia-ly 28.8 15 0.00052 33.7 0.7 15 222-236 153-167 (453)
56 1hjb_A Ccaat/enhancer binding 28.7 1.6E+02 0.0053 20.8 6.9 26 153-178 39-64 (87)
57 3oja_B Anopheles plasmodium-re 28.1 2.4E+02 0.0081 26.1 9.0 34 142-175 522-555 (597)
58 3thf_A Protein shroom; coiled- 27.9 1.2E+02 0.004 24.8 5.7 36 138-177 11-46 (190)
59 4gfh_A DNA topoisomerase 2; to 27.8 2E+02 0.0068 29.9 8.9 43 26-74 958-1000(1177)
60 1g6u_A Domain swapped dimer; d 26.3 1.1E+02 0.0038 18.4 4.8 21 119-139 15-35 (48)
61 2oxj_A Hybrid alpha/beta pepti 26.2 85 0.0029 18.2 3.3 21 153-173 4-24 (34)
62 1z56_A Ligase interacting fact 26.1 1.5E+02 0.005 25.1 6.2 48 9-56 117-164 (246)
63 3hnw_A Uncharacterized protein 25.9 2.2E+02 0.0075 21.7 10.2 68 91-173 66-133 (138)
64 3m48_A General control protein 25.4 75 0.0026 18.4 3.0 21 153-173 3-23 (33)
65 3a7p_A Autophagy protein 16; c 25.3 2.5E+02 0.0084 22.0 8.6 22 151-172 111-132 (152)
66 2l5g_B Putative uncharacterize 23.6 1.3E+02 0.0045 18.3 5.0 37 121-165 2-38 (42)
67 2jo8_A Serine/threonine-protei 23.3 90 0.0031 19.9 3.4 18 117-134 6-23 (51)
68 1kd8_B GABH BLL, GCN4 acid bas 22.4 1.1E+02 0.0037 18.0 3.3 20 154-173 5-24 (36)
69 3ghg_A Fibrinogen alpha chain; 22.4 5E+02 0.017 24.5 10.8 9 63-71 50-58 (562)
70 3c3f_A Alpha/beta peptide with 21.5 1.2E+02 0.0041 17.6 3.3 21 153-173 4-24 (34)
71 1m2d_A [2Fe-2S] ferredoxin; th 21.2 48 0.0016 24.0 2.1 32 39-72 59-90 (110)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=1e-38 Score=230.99 Aligned_cols=74 Identities=51% Similarity=0.813 Sum_probs=69.5
Q ss_pred CccccceEEeCCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccccCCCchHHHHHHHhhhhcCC
Q 040075 2 GRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAKGV 77 (254)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~~~s~~~ileRY~~~~~~ 77 (254)
||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+||+|+|+| ++|++||+||+..++.
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s--~~~~~il~ry~~~~~~ 74 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS--TDMDKVLLKYTEYNEP 74 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEES--SCHHHHHHHHHHC---
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCC--CCHHHHHHHHHhccCC
Confidence 8999999999999999999999999999999999999999999999999999999998 6799999999987643
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=5.9e-38 Score=232.50 Aligned_cols=76 Identities=50% Similarity=0.782 Sum_probs=72.7
Q ss_pred CccccceEEeCCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccccCCCchHHHHHHHhhhhcCCcc
Q 040075 2 GRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAKGVRI 79 (254)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~~~s~~~ileRY~~~~~~~~ 79 (254)
||+||+|++|||+++|||||||||+||||||.||||||||+||||||||+|++|+|+| ++|+.||+||+..++...
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s--~~~~~il~rY~~~~~~~~ 76 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS--TDMDKVLLKYTEYNEPHE 76 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEES--SCHHHHHHHHHHCCSCCC
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCC--CCHHHHHHHHHhcCcccc
Confidence 8999999999999999999999999999999999999999999999999999999998 689999999999876644
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=3.1e-36 Score=227.00 Aligned_cols=71 Identities=44% Similarity=0.612 Sum_probs=68.1
Q ss_pred CCccccceEEeCCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccccCCCchHHHHHHHhhh
Q 040075 1 MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQA 73 (254)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~~~s~~~ileRY~~ 73 (254)
|||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+||+|+|+| +++..|+++|..
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s--ps~~~il~r~~G 86 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFST--PKFEPIVTQQEG 86 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEC--TTTTHHHHSHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecC--CCHHHHHHHhhC
Confidence 89999999999999999999999999999999999999999999999999999999999 468899998854
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=5.3e-36 Score=222.91 Aligned_cols=70 Identities=36% Similarity=0.542 Sum_probs=67.3
Q ss_pred CCccccceEEeCCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccccCCCchHHHHHHHhh
Q 040075 1 MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQ 72 (254)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~~~s~~~ileRY~ 72 (254)
|||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+| ++|..+|++|.
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s--~~~~~~i~~~~ 79 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT--RKLQPMITSET 79 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEEC--GGGGGGTSSHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecC--CCHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999 67999998664
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=1.9e-35 Score=224.00 Aligned_cols=69 Identities=36% Similarity=0.550 Sum_probs=66.8
Q ss_pred CCccccceEEeCCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccccCCCchHHHHHHHh
Q 040075 1 MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRY 71 (254)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~~~s~~~ileRY 71 (254)
|||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|++ ++|..||+++
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s--~~~~~vi~~~ 77 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT--RKLQPMITSE 77 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEEC--GGGGGGTSSH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecC--ccHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999998 6799999874
No 6
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=74.34 E-value=16 Score=24.15 Aligned_cols=51 Identities=29% Similarity=0.329 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 120 SVKLEELTQLEHQLECSVKKVRV--RKMEILRQQTDNLLRKEKMLEEENEQIF 170 (254)
Q Consensus 120 ~Ls~~EL~~LE~~Le~~L~~VR~--RK~~ll~~qi~~lkkk~~~l~een~~L~ 170 (254)
..++.|-.++...|-.+=.+|.. +-+.-+.+++..++++...|+.||..|+
T Consensus 9 pit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 9 AVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 47899999999888887776653 2233455777888889999999998886
No 7
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=72.36 E-value=5.9 Score=27.44 Aligned_cols=27 Identities=41% Similarity=0.578 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 146 EILRQQTDNLLRKEKMLEEENEQIFSL 172 (254)
Q Consensus 146 ~ll~~qi~~lkkk~~~l~een~~L~~~ 172 (254)
++|+++|..|..+...|+.||..|+.-
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467778888888888888888777643
No 8
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=69.62 E-value=22 Score=26.51 Aligned_cols=60 Identities=17% Similarity=0.253 Sum_probs=43.9
Q ss_pred CcchhHHHHHhhhhhhhhHHHHhhhcccCCC--CcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 85 NHDSEAIYNELGRMRKETHNLELSLRRYTGD--IDLNSVKLEELTQLEHQLECSVKKVRVRKM 145 (254)
Q Consensus 85 ~~~~e~l~~e~~kLkke~~~L~~~~r~~~Ge--~dL~~Ls~~EL~~LE~~Le~~L~~VR~RK~ 145 (254)
+...|.|..++.+|+-+|..|++.++.- |- ++=.-|+..+=..+-...-.+|...-.+|.
T Consensus 7 ~~t~EeLaaeL~kLqmENK~LKkkl~~~-g~~~p~d~~LTp~qKea~I~s~~~~Lss~A~~KI 68 (110)
T 2oa5_A 7 DKTYEEMVKEVERLKLENKTLKQKVKSS-GAVSSDDSILTAAKRESIIVSSSRALGAVAMRKI 68 (110)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTC----------CCBCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5668899999999999999999998752 32 245668999888888877777777666554
No 9
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=66.17 E-value=23 Score=22.88 Aligned_cols=34 Identities=26% Similarity=0.423 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040075 138 KKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKD 175 (254)
Q Consensus 138 ~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 175 (254)
..-|.||..-+ +.|..++..|+.+|..|...+..
T Consensus 14 ~rSR~RKk~~~----~~LE~~v~~L~~eN~~L~~~~~~ 47 (55)
T 1dh3_A 14 RESRRKKKEYV----KSLENRVAVLENQNKTLIEELKA 47 (55)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666544 68899999999999999998854
No 10
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=65.82 E-value=25 Score=22.97 Aligned_cols=38 Identities=21% Similarity=0.179 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 040075 137 VKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDNNN 178 (254)
Q Consensus 137 L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~~~ 178 (254)
-.+.|.||.+.+ +.|..++..|+.+|..|...+.....
T Consensus 13 A~k~R~rKk~~~----~~Le~~~~~L~~~n~~L~~~i~~L~~ 50 (61)
T 1t2k_D 13 ASRSRQKRKVWV----QSLEKKAEDLSSLNGQLQSEVTLLRN 50 (61)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567776655 58889999999999999998865433
No 11
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=65.05 E-value=14 Score=23.90 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 146 EILRQQTDNLLRKEKMLEEENEQIFSLLK 174 (254)
Q Consensus 146 ~ll~~qi~~lkkk~~~l~een~~L~~~l~ 174 (254)
+.|..+.+.|+.|...|.+++..|+.++.
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777888888888888888888774
No 12
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=63.70 E-value=33 Score=23.60 Aligned_cols=52 Identities=17% Similarity=0.182 Sum_probs=36.0
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040075 117 DLNSVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKD 175 (254)
Q Consensus 117 dL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 175 (254)
.+.+++. +.+|+..|......||.+.. .|..+.+.....+++...|+.++..
T Consensus 14 ~~~~mgt--i~eLq~~L~~K~eELr~kd~-----~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 14 SIEGRGS--LRDLQYALQEKIEELRQRDA-----LIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp -----CH--HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCCc--HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555544 88899999988888887643 3567888888888888888887743
No 13
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=63.42 E-value=26 Score=23.31 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040075 137 VKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKD 175 (254)
Q Consensus 137 L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 175 (254)
-.+.|.||.+-+ +.|..++..|..+|..|...+..
T Consensus 21 ArrsR~RK~~~~----~~Le~~v~~L~~eN~~L~~ev~~ 55 (63)
T 2dgc_A 21 ARRSRARKLQRM----KQLEDKVEELLSKNYHLENEVAR 55 (63)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566665554 68999999999999999988753
No 14
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=62.00 E-value=31 Score=22.79 Aligned_cols=38 Identities=21% Similarity=0.195 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 040075 137 VKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDNNN 178 (254)
Q Consensus 137 L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~~~ 178 (254)
-.+-|.+|.+- ++.+..+...|+.+|..|..++...+.
T Consensus 14 A~R~R~KKk~~----~~~le~~~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 14 ATRYRQKKRAE----QEALTGECKELEKKNEALKERADSLAK 51 (63)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555443 468888888899999999888866544
No 15
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=59.10 E-value=44 Score=23.51 Aligned_cols=43 Identities=21% Similarity=0.431 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 121 VKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQ 168 (254)
Q Consensus 121 Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~ 168 (254)
+|++=|.+||..+..++..| .++.-+++.||.|-..|.++|..
T Consensus 3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999877 44555667777776665555555
No 16
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=59.09 E-value=35 Score=22.45 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040075 137 VKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDN 176 (254)
Q Consensus 137 L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~ 176 (254)
-.+-|.||.+.+ +.|..++..|+.+|..|...+...
T Consensus 14 A~rcR~rKk~~~----~~Le~~v~~L~~~n~~L~~ei~~L 49 (63)
T 2wt7_A 14 AAKCRNRRRELT----DTLQAETDQLEDEKSALQTEIANL 49 (63)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666555 589999999999999999988653
No 17
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=58.06 E-value=30 Score=29.22 Aligned_cols=52 Identities=17% Similarity=0.161 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 122 KLEELTQLEHQLECSVKKVRVRKMEIL--RQQTDNLLRKEKMLEEENEQIFSLL 173 (254)
Q Consensus 122 s~~EL~~LE~~Le~~L~~VR~RK~~ll--~~qi~~lkkk~~~l~een~~L~~~l 173 (254)
+.+|+..|...++..-..+...-.+++ +++++.++.....+.+.-..+...+
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l 141 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLA 141 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788888877766666665555544 3345444444444444333333333
No 18
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=57.76 E-value=37 Score=22.23 Aligned_cols=36 Identities=31% Similarity=0.309 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040075 137 VKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDN 176 (254)
Q Consensus 137 L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~ 176 (254)
-.+-|.||.+.+ +.|..++..|+.+|..|...+...
T Consensus 13 A~k~R~rKk~~~----~~Le~~v~~L~~~n~~L~~~v~~L 48 (62)
T 1jnm_A 13 ASKSRKRKLERI----ARLEEKVKTLKAQNSELASTANML 48 (62)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666655 589999999999999999988643
No 19
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=54.97 E-value=70 Score=24.58 Aligned_cols=33 Identities=30% Similarity=0.485 Sum_probs=29.2
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 116 IDLNSVKLEELTQLEHQLECSVKKVRVRKMEIL 148 (254)
Q Consensus 116 ~dL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll 148 (254)
.+|++|+.++|+++-..|-..+..+-+-|+.+-
T Consensus 53 L~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE 85 (133)
T 1j1d_C 53 LELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (133)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 489999999999999999999999888887664
No 20
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=54.59 E-value=0.43 Score=33.77 Aligned_cols=30 Identities=30% Similarity=0.449 Sum_probs=23.6
Q ss_pred EEEEEecCCCCcccccCCCchHHHHHHHhhhhcC
Q 040075 43 IGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAKG 76 (254)
Q Consensus 43 valIifS~~gk~~e~~s~~~s~~~ileRY~~~~~ 76 (254)
|+||||+| +|+++... ++-+.+..|++...
T Consensus 16 VaLlvfGp-kkLP~l~r---~lGk~ir~fK~~~~ 45 (78)
T 2l16_A 16 IALIIFGP-SKLPEIGR---AAGRTLLEFKSATK 45 (78)
T ss_dssp HHHHHSCT-TTHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHhheeCc-cHhHHHHH---HHHHHHHHHHHHHH
Confidence 77899998 79999875 57777788877643
No 21
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=54.28 E-value=58 Score=24.04 Aligned_cols=32 Identities=9% Similarity=0.277 Sum_probs=28.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 117 DLNSVKLEELTQLEHQLECSVKKVRVRKMEIL 148 (254)
Q Consensus 117 dL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll 148 (254)
+|++|+.++|+++-..|-..+..+-+-|+.+-
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE 69 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDLQ 69 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 79999999999999999999998888887664
No 22
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=52.49 E-value=26 Score=20.55 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 142 VRKMEILRQQTDNLLRKEKMLEEENE 167 (254)
Q Consensus 142 ~RK~~ll~~qi~~lkkk~~~l~een~ 167 (254)
.||..-....|+.++++...|+++-.
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 47777778888888888777776643
No 23
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=51.58 E-value=57 Score=24.07 Aligned_cols=32 Identities=9% Similarity=0.202 Sum_probs=28.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 117 DLNSVKLEELTQLEHQLECSVKKVRVRKMEIL 148 (254)
Q Consensus 117 dL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll 148 (254)
+|++|+.++|+++-..|-..+..+-+-|+.+-
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE 69 (107)
T 1ytz_T 38 NIDHLNEDKLRDKAKELWDWLYQLQTEKYDFA 69 (107)
T ss_dssp CCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 89999999999999999999988888887664
No 24
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=51.38 E-value=3.4 Score=30.70 Aligned_cols=42 Identities=21% Similarity=0.272 Sum_probs=33.8
Q ss_pred eCCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccc
Q 040075 11 IESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEF 57 (254)
Q Consensus 11 Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~ 57 (254)
|.+..-...||-=.-.-|.+|.-+||.+| ++.|+|.|+-|-.
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef~l 62 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSFRL 62 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEEEE
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEEEe
Confidence 45555667777778889999999999776 9999999987654
No 25
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=50.04 E-value=85 Score=24.10 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 130 EHQLECSVKKVRVRKMEILRQ--QTDNLLRKEKMLEEENEQIFSLLK 174 (254)
Q Consensus 130 E~~Le~~L~~VR~RK~~ll~~--qi~~lkkk~~~l~een~~L~~~l~ 174 (254)
+..++..-..+-+-|.++... +++.++++...+.+++..|..++.
T Consensus 81 ~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~ 127 (138)
T 3hnw_A 81 SLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIV 127 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444432 234455555555555555555543
No 26
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=48.63 E-value=16 Score=19.63 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=12.9
Q ss_pred HHHHHhhhhhhhhHHHHhhhc
Q 040075 90 AIYNELGRMRKETHNLELSLR 110 (254)
Q Consensus 90 ~l~~e~~kLkke~~~L~~~~r 110 (254)
.+..+++.+++.+.+|++.+|
T Consensus 5 elykeledlqerlrklrkklr 25 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 455666666666666666554
No 27
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=44.66 E-value=93 Score=23.66 Aligned_cols=57 Identities=14% Similarity=0.237 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040075 120 SVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDNN 177 (254)
Q Consensus 120 ~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~~ 177 (254)
+++++++..+-...+.+-..+..+ .+++.++++.+..+...|++....|...+...+
T Consensus 59 G~sL~eIk~~l~~~~~~~~~~~~~-~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 115 (142)
T 3gp4_A 59 GLSIEALIDYLALFREGEHTLEAR-AELLKKQRIELKNRIDVMQEALDRLDFKIDNYD 115 (142)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888888766554433222222 356677788888888888887777777775443
No 28
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=44.47 E-value=92 Score=32.08 Aligned_cols=25 Identities=16% Similarity=0.085 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 040075 153 DNLLRKEKMLEEENEQIFSLLKDNN 177 (254)
Q Consensus 153 ~~lkkk~~~l~een~~L~~~l~~~~ 177 (254)
+.|+.++..|+++|..|+.++.+.+
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888889999999998887654
No 29
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=44.34 E-value=90 Score=22.73 Aligned_cols=56 Identities=23% Similarity=0.260 Sum_probs=31.9
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 117 DLNSVKLEELTQLEHQLECSVKKV-------RVRKMEILRQQTDNLLRKEKMLEEENEQIFSLL 173 (254)
Q Consensus 117 dL~~Ls~~EL~~LE~~Le~~L~~V-------R~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l 173 (254)
.|.++|-.||.+=--.|+..+..+ |..-.. ...++..|..++..|..||..|+..-
T Consensus 26 rL~~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~~~-~~~~v~eLe~everL~~ENq~L~~e~ 88 (104)
T 3s9g_A 26 SLQNMSKQELIKEYLELEKSLSRMEDENNRLRLESKR-LDARVRELELELDRLRAENLQLLTEN 88 (104)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666665333333333333 222111 13467788888888888888887653
No 30
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=43.37 E-value=1.9e+02 Score=26.17 Aligned_cols=40 Identities=23% Similarity=0.205 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040075 133 LECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDN 176 (254)
Q Consensus 133 Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~ 176 (254)
+...+...|++..+. .+..+..+..++++|..++..+.+.
T Consensus 422 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 422 MYVEQQSVQNNAIRD----WDMYQHKETQLAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhh----hhhhhhHHHHHHHHhhhhhhhhhhh
Confidence 444444555553333 4566777777888888888877654
No 31
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=43.28 E-value=71 Score=21.67 Aligned_cols=39 Identities=23% Similarity=0.225 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 040075 135 CSVKKVRVRKMEILRQ---QTDNLLRKEKMLEEENEQIFSLL 173 (254)
Q Consensus 135 ~~L~~VR~RK~~ll~~---qi~~lkkk~~~l~een~~L~~~l 173 (254)
.+-...|.||.+-|.+ ++..|......+..+|..|+..+
T Consensus 18 ~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i 59 (70)
T 1gd2_E 18 AAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKV 59 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677787766641 33333333333444555555444
No 32
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=42.80 E-value=1.2e+02 Score=24.46 Aligned_cols=35 Identities=29% Similarity=0.441 Sum_probs=30.3
Q ss_pred CCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 114 GDIDLNSVKLEELTQLEHQLECSVKKVRVRKMEIL 148 (254)
Q Consensus 114 Ge~dL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll 148 (254)
...+|++|+.++|+++-..|-..+..+-+-|+.+-
T Consensus 51 kPLnid~Lse~~L~e~ckELh~~I~~LEeEKYDlE 85 (180)
T 1j1e_C 51 QPLELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (180)
T ss_dssp CCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 33489999999999999999999999888887764
No 33
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=41.96 E-value=1.8e+02 Score=26.40 Aligned_cols=57 Identities=9% Similarity=0.272 Sum_probs=36.2
Q ss_pred CCCCcccccCCCchHHHHHHHhhhhcCCccCCCCCCcchhHHHHHhhhhhhhhHHHHhhhccc
Q 040075 50 CTGKLTEFCSESTSIEEIIRRYQAAKGVRIPAGVSNHDSEAIYNELGRMRKETHNLELSLRRY 112 (254)
Q Consensus 50 ~~gk~~e~~s~~~s~~~ileRY~~~~~~~~~~~~~~~~~e~l~~e~~kLkke~~~L~~~~r~~ 112 (254)
++.++=.|||..=.+.+.|.+|+.....++. ..|.+..++..+..+...|...+...
T Consensus 11 ~~~~~G~~CPT~C~i~d~L~k~e~~V~~~l~------~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 11 LDERFGSYCPTTCGIADFFNKYRLTTDGELL------EIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp CCGGGCCEEECTTHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCcCCCcccHHHHHHHHHhcchhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456667888656799999999986544332 23455556666666666665555433
No 34
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=41.87 E-value=58 Score=19.88 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 148 LRQQTDNLLRKEKMLEEENEQIFSLL 173 (254)
Q Consensus 148 l~~qi~~lkkk~~~l~een~~L~~~l 173 (254)
+......|..++..|+.||..|++.+
T Consensus 15 le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 15 LENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 34445667777788888888888765
No 35
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=41.05 E-value=1.1e+02 Score=22.86 Aligned_cols=49 Identities=12% Similarity=0.098 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040075 123 LEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKD 175 (254)
Q Consensus 123 ~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 175 (254)
++.|......|+..+..+..+-. .++..++.+...|+.+-..++..+..
T Consensus 52 l~~l~~~~~~LE~~l~e~e~~~~----~~l~~~q~~i~~lE~eL~~~r~e~~~ 100 (129)
T 3tnu_B 52 IDNVKKQCANLQNAIADAEQRGE----LALKDARNKLAELEEALQKAKQDMAR 100 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34555666666766666655533 23456666666666666666666543
No 36
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=38.68 E-value=52 Score=24.03 Aligned_cols=29 Identities=21% Similarity=0.154 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 040075 150 QQTDNLLRKEKMLEEENEQIFSLLKDNNN 178 (254)
Q Consensus 150 ~qi~~lkkk~~~l~een~~L~~~l~~~~~ 178 (254)
++++.+++++..|+.||..|+......+.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788889999999999999988865443
No 37
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=38.04 E-value=77 Score=20.16 Aligned_cols=26 Identities=38% Similarity=0.553 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 040075 153 DNLLRKEKMLEEENEQIFSLLKDNNN 178 (254)
Q Consensus 153 ~~lkkk~~~l~een~~L~~~l~~~~~ 178 (254)
+.|-+++..|..||..|++++.++-.
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~ 31 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSN 31 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHH
Confidence 45556677778899999999977544
No 38
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=37.30 E-value=1.1e+02 Score=23.09 Aligned_cols=47 Identities=17% Similarity=0.156 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 124 EELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLK 174 (254)
Q Consensus 124 ~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l~ 174 (254)
+.+......|+..+..+..+- ..++..++.+...|+.+-..++..+.
T Consensus 55 ~~l~~~~~sLE~~l~e~e~~~----~~~l~~~q~~i~~lE~eL~~~r~em~ 101 (131)
T 3tnu_A 55 QSQLSMKASLENSLEETKGRY----CMQLAQIQEMIGSVEEQLAQLRCEME 101 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666665555543 22334566666666666666665554
No 39
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=36.65 E-value=2e+02 Score=26.72 Aligned_cols=44 Identities=14% Similarity=0.113 Sum_probs=24.0
Q ss_pred chhhhhhhhhccCCCcEEEEEecCCCCcccccCCCchHHHHHHHhhhhc
Q 040075 27 GLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAK 75 (254)
Q Consensus 27 GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~~~s~~~ileRY~~~~ 75 (254)
|+-||..|.. -||.-|.+ +++.+=.||+..-.+.+.|-+|+...
T Consensus 55 ~~~~~~~~~~--~~a~~c~~---~~~~~G~~CPTtC~l~D~L~k~q~~V 98 (464)
T 1m1j_B 55 QAMKKGPIIY--PDAGGCKH---PLDELGVLCPTGCELQTTLLKQEKTV 98 (464)
T ss_dssp --------CC--CCCSCEEC---SSTTTCEEEECTTHHHHHHHHHHHHH
T ss_pred hhhccCcccC--CCCCCccc---cCCCccCcCCCccHHHHHHHHhhhhh
Confidence 5567777766 77777754 56666677875446777777776643
No 40
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=36.00 E-value=91 Score=20.44 Aligned_cols=30 Identities=17% Similarity=0.290 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 145 MEILRQQTDNLLRKEKMLEEENEQIFSLLK 174 (254)
Q Consensus 145 ~~ll~~qi~~lkkk~~~l~een~~L~~~l~ 174 (254)
.+-|..+...|+.++..|+.|+..|+..|.
T Consensus 32 ~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 32 CKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344666677788888888888888877663
No 41
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=35.49 E-value=41 Score=18.57 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 040075 155 LLRKEKMLEEENEQIFSLLKD 175 (254)
Q Consensus 155 lkkk~~~l~een~~L~~~l~~ 175 (254)
+..-...|+.||++|+.++++
T Consensus 4 lnallasleaenkqlkakvee 24 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEE 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334456788899988888754
No 42
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=35.13 E-value=57 Score=19.40 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 040075 149 RQQTDNLLRKEKMLEEENEQIF 170 (254)
Q Consensus 149 ~~qi~~lkkk~~~l~een~~L~ 170 (254)
.+||..++.|...|.+|.-+|.
T Consensus 14 keQi~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 14 KEQILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777765554
No 43
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=34.97 E-value=73 Score=19.03 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 147 ILRQQTDNLLRKEKMLEEENEQIFSLL 173 (254)
Q Consensus 147 ll~~qi~~lkkk~~~l~een~~L~~~l 173 (254)
-|.+....+-.|++.|+.+|..|..++
T Consensus 10 ~LNdrlAsyidkVR~LE~~N~~Le~~i 36 (39)
T 1gk7_A 10 ELNDRFANYIDKVRFLEQQNKILLAEL 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566678999999999988776
No 44
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=32.79 E-value=39 Score=24.10 Aligned_cols=26 Identities=12% Similarity=0.219 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 148 LRQQTDNLLRKEKMLEEENEQIFSLL 173 (254)
Q Consensus 148 l~~qi~~lkkk~~~l~een~~L~~~l 173 (254)
+...|..+.++...++++-..|...+
T Consensus 77 i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 77 LQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666677777766666666665555
No 45
>1kaf_A Transcription regulatory protein MOTA; escherichia coli, X-RAY crystallography, protein-DNA interactions, structural genomics; 1.60A {Enterobacteria phage T4} SCOP: d.199.1.1
Probab=32.67 E-value=12 Score=27.84 Aligned_cols=53 Identities=17% Similarity=0.319 Sum_probs=37.9
Q ss_pred cceEEe-CCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccccCCCchHHHHHHHhhhhc
Q 040075 6 IEIARI-ESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAK 75 (254)
Q Consensus 6 i~ik~I-en~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~~~s~~~ileRY~~~~ 75 (254)
+++|.+ +|.+|=.++|.||-.|+-+ +=....|.+--|+. .-.+++++.|...-
T Consensus 23 ie~K~~~~~RSN~~i~f~KRt~GiRq---------------fEi~n~G~fRI~gY--k~se~~~~~f~slG 76 (108)
T 1kaf_A 23 FVLKKVEIYRSNYLAILEKRTNGIRN---------------FEINNNGNMRIFGY--KMMEHHIQKFTDIG 76 (108)
T ss_dssp CCEEEEEEETTEEEEEEEEEETTEEE---------------EEECTTSEEEEEEE--SCCHHHHHHHHTTT
T ss_pred ceeeeeEeeccceEEeeecccCceeE---------------EEEecCCcEEEEEe--cCCHHHHHHHHhcC
Confidence 778877 7889999999999999632 23356777666665 34577777776653
No 46
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=32.24 E-value=96 Score=19.53 Aligned_cols=26 Identities=35% Similarity=0.369 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 145 MEILRQQTDNLLRKEKMLEEENEQIF 170 (254)
Q Consensus 145 ~~ll~~qi~~lkkk~~~l~een~~L~ 170 (254)
.+-+...+...+++.+.|+++|--|-
T Consensus 16 ~eeler~lrk~kk~iKklEdeNPWLG 41 (50)
T 1a92_A 16 LEELERDLRKLKKKIKKLEEDNPWLG 41 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTHH
T ss_pred HHHHHHHHHHHHHHHHhhhccCCchh
Confidence 34445556667777888888775443
No 47
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=32.09 E-value=55 Score=26.11 Aligned_cols=39 Identities=13% Similarity=0.359 Sum_probs=28.2
Q ss_pred hccCCCcEEEEEecCCCCccc-ccCCC-----chHHHHHHHhhhh
Q 040075 36 SVLCDAEIGLIIFSCTGKLTE-FCSES-----TSIEEIIRRYQAA 74 (254)
Q Consensus 36 SvLCda~valIifS~~gk~~e-~~s~~-----~s~~~ileRY~~~ 74 (254)
+.-|++.|-+++|||+.+.|- |.+.. ..+++||..++..
T Consensus 116 ~~~ceiKvLiLlYs~~k~aflGfIPnDQ~~Fv~rlr~Viq~~k~~ 160 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQVITNHKQV 160 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEEEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CCCcceEEEEEEEcCCcceeeeeccCCHHHHHHHHHHHHHHHHHH
Confidence 566999999999999888874 66532 2466666666543
No 48
>2qez_A Ethanolamine ammonia-lyase heavy chain; ethanol ammonia lyase large subunit (EUTB), structural genomics; HET: MSE; 2.15A {Listeria monocytogenes serotype 4B}
Probab=31.13 E-value=15 Score=33.67 Aligned_cols=15 Identities=40% Similarity=0.698 Sum_probs=11.9
Q ss_pred CCCCCcccCCCCCCC
Q 040075 222 IPHYQPFRLQPTQPN 236 (254)
Q Consensus 222 ~p~~~~frlqp~qpn 236 (254)
.|.-.+.||||+||-
T Consensus 154 l~G~ls~RlQPNhPT 168 (455)
T 2qez_A 154 LPGTFSARLQPNHPT 168 (455)
T ss_dssp CTTBCBCEECCCCTT
T ss_pred CCCceecccCCCCCC
Confidence 355568999999995
No 49
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=30.91 E-value=2.3e+02 Score=23.54 Aligned_cols=48 Identities=6% Similarity=0.055 Sum_probs=30.3
Q ss_pred HHHHHHHhhhhcCCccCCCCCCcchhHHHHHhhhhhhhhHHHHhhhcccCCC
Q 040075 64 IEEIIRRYQAAKGVRIPAGVSNHDSEAIYNELGRMRKETHNLELSLRRYTGD 115 (254)
Q Consensus 64 ~~~ileRY~~~~~~~~~~~~~~~~~e~l~~e~~kLkke~~~L~~~~r~~~Ge 115 (254)
+..-+++|+.....-.. .-.++.+..+++.++.++..++..+..++..
T Consensus 72 ~~~ri~~~~~~l~~v~~----~kE~~aL~kEie~~~~~i~~lE~eile~~e~ 119 (256)
T 3na7_A 72 TNAKIASIQKKMSEIKS----ERELRSLNIEEDIAKERSNQANREIENLQNE 119 (256)
T ss_dssp HHHHHHHHHHHHHHCSS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666654322111 3347788888888888888888777655543
No 50
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=30.66 E-value=1.1e+02 Score=19.72 Aligned_cols=28 Identities=29% Similarity=0.299 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 146 EILRQQTDNLLRKEKMLEEENEQIFSLL 173 (254)
Q Consensus 146 ~ll~~qi~~lkkk~~~l~een~~L~~~l 173 (254)
..+..+...|+.++..|.+++..|...+
T Consensus 32 ~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 32 EDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666777777777888887777655
No 51
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=30.31 E-value=13 Score=27.33 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=12.4
Q ss_pred HHHHHhhhhhhhhHHHHhhh--cccCCC
Q 040075 90 AIYNELGRMRKETHNLELSL--RRYTGD 115 (254)
Q Consensus 90 ~l~~e~~kLkke~~~L~~~~--r~~~Ge 115 (254)
.+..|..+|+++++.|+.++ +++.|+
T Consensus 23 ~Le~E~~rLr~~~~~LE~~Le~~~l~Gd 50 (100)
T 1go4_E 23 ELEGERSRLEEEKRMLEAQLERRALQGD 50 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34444444444554444333 455676
No 52
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=30.03 E-value=94 Score=23.57 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=30.1
Q ss_pred HHHHHhhhhhhhhHHHHhhhcccCCCC-cCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 90 AIYNELGRMRKETHNLELSLRRYTGDI-DLNSVKLEELTQLEHQLECSVKKVRVRKM 145 (254)
Q Consensus 90 ~l~~e~~kLkke~~~L~~~~r~~~Ge~-dL~~Ls~~EL~~LE~~Le~~L~~VR~RK~ 145 (254)
.+...+..++..++.|...++-....| .. +|+..||..=...+...-..|..-|.
T Consensus 71 EL~~~l~sie~dLeDLe~sI~ivE~np~kF-~l~~~Ei~~Rr~fV~~~r~~I~~mk~ 126 (130)
T 4dnd_A 71 ELRNGLRSIEWDLEDLEETIGIVEANPGKF-KLPAGDLQERKVFVERMREAVQEMKD 126 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777777776665333221 12 45666666555555544444444333
No 53
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=29.26 E-value=1.4e+02 Score=20.57 Aligned_cols=26 Identities=19% Similarity=0.111 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 040075 153 DNLLRKEKMLEEENEQIFSLLKDNNN 178 (254)
Q Consensus 153 ~~lkkk~~~l~een~~L~~~l~~~~~ 178 (254)
..+..+...|+.+|..|+.++.....
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~ 64 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSR 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888999999999999865433
No 54
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=28.91 E-value=1.9e+02 Score=21.94 Aligned_cols=55 Identities=13% Similarity=0.187 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040075 120 SVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKD 175 (254)
Q Consensus 120 ~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 175 (254)
+++++++..+-...+.+-..+.. ..+++.++++.+..+...|++.-..|...+..
T Consensus 73 G~sL~eIk~~l~~~~~~~~~~~~-~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~ 127 (148)
T 3gpv_A 73 GMPIQKIKQFIDWSMEGDSTILH-RLKLMKQQEANVLQLIQDTEKNLKKIQQKIAK 127 (148)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhhcCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888877654432222222 23466777777878877777777777777643
No 55
>3abq_A Ethanolamine ammonia-lyase heavy chain; (beta/alpha)8 fold, cobalt, cobalamin; HET: B12; 2.05A {Escherichia coli} PDB: 3abo_A* 3abr_A* 3abs_A* 3any_A* 3ao0_A*
Probab=28.83 E-value=15 Score=33.68 Aligned_cols=15 Identities=40% Similarity=0.547 Sum_probs=11.9
Q ss_pred CCCCCcccCCCCCCC
Q 040075 222 IPHYQPFRLQPTQPN 236 (254)
Q Consensus 222 ~p~~~~frlqp~qpn 236 (254)
.|.-.+.||||+||-
T Consensus 153 l~G~ls~RlQPNhPT 167 (453)
T 3abq_A 153 IPGTFSARLQPNDTR 167 (453)
T ss_dssp CTTBCEEEECCCCTT
T ss_pred CCCceecccCCCCCC
Confidence 355568999999995
No 56
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=28.66 E-value=1.6e+02 Score=20.83 Aligned_cols=26 Identities=19% Similarity=0.111 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 040075 153 DNLLRKEKMLEEENEQIFSLLKDNNN 178 (254)
Q Consensus 153 ~~lkkk~~~l~een~~L~~~l~~~~~ 178 (254)
..+..+...|+.+|..|+.++.....
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~ 64 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSR 64 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667788888899888888865443
No 57
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=28.13 E-value=2.4e+02 Score=26.07 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040075 142 VRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKD 175 (254)
Q Consensus 142 ~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~ 175 (254)
.++.+...++++..+++.+.++++...+...+.+
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~ 555 (597)
T 3oja_B 522 LRETQARRTEADAKQKETEDLEQENIALEKQLDN 555 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhh
Confidence 3444455555555555555555666666665544
No 58
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=27.90 E-value=1.2e+02 Score=24.78 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040075 138 KKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDNN 177 (254)
Q Consensus 138 ~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~~~ 177 (254)
+.|..+|.+++ +.+++|...|.++...|...+..++
T Consensus 11 ~~i~~Kk~ELi----~~L~~kL~~L~~eqe~l~ee~~~N~ 46 (190)
T 3thf_A 11 NLIKQKMDELI----KHLNQKIVSLKREQQTISEECSAND 46 (190)
T ss_dssp CHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999998 4999999999999999988886543
No 59
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=27.82 E-value=2e+02 Score=29.94 Aligned_cols=43 Identities=19% Similarity=0.411 Sum_probs=29.4
Q ss_pred cchhhhhhhhhccCCCcEEEEEecCCCCcccccCCCchHHHHHHHhhhh
Q 040075 26 GGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAA 74 (254)
Q Consensus 26 ~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~~~s~~~ileRY~~~ 74 (254)
++|+|+-. |.+-.++ ..+++|.+.|+++.|.+ +++||+.|-.+
T Consensus 958 ~~L~k~t~-L~~s~~~-~Nm~~~d~~g~i~k~~~----l~eiL~~f~~~ 1000 (1177)
T 4gfh_A 958 IGFYERFK-LISPISL-MNMVAFDPHGKIKKYNS----VNEILSEFYYV 1000 (1177)
T ss_dssp HCHHHHTT-CEEEECC-SCCEEECTTSCEEECSS----HHHHHHHHHHH
T ss_pred HhHHHhcc-Ccceecc-eEEEEEcCCCCccCcCC----HHHHHHHHHHH
Confidence 45666543 4433322 25788999999999966 88999887654
No 60
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=26.32 E-value=1.1e+02 Score=18.41 Aligned_cols=21 Identities=38% Similarity=0.453 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 040075 119 NSVKLEELTQLEHQLECSVKK 139 (254)
Q Consensus 119 ~~Ls~~EL~~LE~~Le~~L~~ 139 (254)
++.|.+||-.||..|...-++
T Consensus 15 egfspeelaaleselqalekk 35 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKK 35 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHH
Confidence 356899999999887644333
No 61
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=26.20 E-value=85 Score=18.21 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 040075 153 DNLLRKEKMLEEENEQIFSLL 173 (254)
Q Consensus 153 ~~lkkk~~~l~een~~L~~~l 173 (254)
..|..|+..|..+|..|..++
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV 24 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEV 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHH
Confidence 455556666666666666555
No 62
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=26.08 E-value=1.5e+02 Score=25.09 Aligned_cols=48 Identities=17% Similarity=0.247 Sum_probs=2.4
Q ss_pred EEeCCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCccc
Q 040075 9 ARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTE 56 (254)
Q Consensus 9 k~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e 56 (254)
-.|++...=++|+.||-.||..|..+|+.--+-+=++=.|--+.+++.
T Consensus 117 ~~iev~~~~~itmrkri~~Itqrlg~ltL~~~~~~eIdLFewA~~L~q 164 (246)
T 1z56_A 117 CRMQDDEVWKVVMELESSAIIRKIAELTLHPVKKGEIDLFEMADKLYK 164 (246)
T ss_dssp ------------------------------------------CTTSGG
T ss_pred cCceeCCEEEEEEeehhhHHHhhheeEEeecCccchhhHHHHHHHHHH
Confidence 455665666899999999999998888755444433333444444443
No 63
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=25.92 E-value=2.2e+02 Score=21.68 Aligned_cols=68 Identities=18% Similarity=0.210 Sum_probs=34.8
Q ss_pred HHHHhhhhhhhhHHHHhhhcccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 91 IYNELGRMRKETHNLELSLRRYTGDIDLNSVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIF 170 (254)
Q Consensus 91 l~~e~~kLkke~~~L~~~~r~~~Ge~dL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~ 170 (254)
+..++-+++.+++.|+..+..+ -+|+.+|-..|...-..+ +-+..+++.++++...|++++..|.
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~----------~kE~~~lK~el~~~~~k~-----e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENK----------DKEIYDLKHELIAAQIKA-----ESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666665544322 334444444444333222 2234455566666666666666665
Q ss_pred HHH
Q 040075 171 SLL 173 (254)
Q Consensus 171 ~~l 173 (254)
..+
T Consensus 131 ~~~ 133 (138)
T 3hnw_A 131 TEL 133 (138)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 64
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=25.39 E-value=75 Score=18.36 Aligned_cols=21 Identities=19% Similarity=0.052 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 040075 153 DNLLRKEKMLEEENEQIFSLL 173 (254)
Q Consensus 153 ~~lkkk~~~l~een~~L~~~l 173 (254)
..|..|+..|..+|..|..++
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV 23 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEV 23 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHH
Confidence 345566666677777666665
No 65
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=25.27 E-value=2.5e+02 Score=22.00 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 040075 151 QTDNLLRKEKMLEEENEQIFSL 172 (254)
Q Consensus 151 qi~~lkkk~~~l~een~~L~~~ 172 (254)
|...+..|.+.|++||..|-..
T Consensus 111 q~n~lE~kl~kLq~EN~~LV~R 132 (152)
T 3a7p_A 111 ENNVLQQKLSDLKKEHSQLVAR 132 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888899999775543
No 66
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=23.59 E-value=1.3e+02 Score=18.31 Aligned_cols=37 Identities=35% Similarity=0.443 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075 121 VKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEE 165 (254)
Q Consensus 121 Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~ee 165 (254)
+|-+||.+=-+.++.-+..+ .++|..+++|.+.|++.
T Consensus 2 ~tk~~l~qkI~kVdrEI~Kt--------e~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 2 LSKEELIQNMDRVDREITMV--------EQQISKLKKKQQQLEEE 38 (42)
T ss_dssp CSSSHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHh
Confidence 34455555444444333333 34566777877777764
No 67
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=23.31 E-value=90 Score=19.90 Aligned_cols=18 Identities=28% Similarity=0.246 Sum_probs=12.4
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 040075 117 DLNSVKLEELTQLEHQLE 134 (254)
Q Consensus 117 dL~~Ls~~EL~~LE~~Le 134 (254)
-|..||++||..--..|+
T Consensus 6 fLk~ls~eEL~~rl~~Ld 23 (51)
T 2jo8_A 6 FLKSWTVEDLQKRLLALD 23 (51)
T ss_dssp GGGGSCHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHcc
Confidence 366789999887554444
No 68
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=22.41 E-value=1.1e+02 Score=17.99 Aligned_cols=20 Identities=15% Similarity=0.054 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 040075 154 NLLRKEKMLEEENEQIFSLL 173 (254)
Q Consensus 154 ~lkkk~~~l~een~~L~~~l 173 (254)
.|..|+..|..+|..|..++
T Consensus 5 QLE~KVEeLl~~~~~Le~eV 24 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKV 24 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 34444444444444444444
No 69
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=22.35 E-value=5e+02 Score=24.52 Aligned_cols=9 Identities=11% Similarity=0.316 Sum_probs=5.9
Q ss_pred hHHHHHHHh
Q 040075 63 SIEEIIRRY 71 (254)
Q Consensus 63 s~~~ileRY 71 (254)
.|+.+|++.
T Consensus 50 rLQglLdkq 58 (562)
T 3ghg_A 50 RMKGLIDEV 58 (562)
T ss_dssp HHHHHHHHH
T ss_pred chhhhHHhh
Confidence 477777764
No 70
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=21.48 E-value=1.2e+02 Score=17.56 Aligned_cols=21 Identities=5% Similarity=-0.171 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 040075 153 DNLLRKEKMLEEENEQIFSLL 173 (254)
Q Consensus 153 ~~lkkk~~~l~een~~L~~~l 173 (254)
..|..|+..|..+|..|..++
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV 24 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEX 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHH
Confidence 344555555666666555554
No 71
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=21.25 E-value=48 Score=24.00 Aligned_cols=32 Identities=9% Similarity=0.152 Sum_probs=23.2
Q ss_pred CCCcEEEEEecCCCCcccccCCCchHHHHHHHhh
Q 040075 39 CDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQ 72 (254)
Q Consensus 39 Cda~valIifS~~gk~~e~~s~~~s~~~ileRY~ 72 (254)
|+---.++|+ |+|..|...++ ..+.+|++.+.
T Consensus 59 C~~gP~v~V~-P~~~~y~~vt~-e~v~~il~~~l 90 (110)
T 1m2d_A 59 SMMGPVVVVY-PDGVWYGQVKP-EDVDEIVEKHL 90 (110)
T ss_dssp GGGCSCEEEE-TTTEEECSCCG-GGHHHHHHHTT
T ss_pred cCCCCEEEEE-eCCEEEecCCH-HHHHHHHHHHH
Confidence 5444445555 88888877766 78999999874
Done!