BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040080
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 64.3 bits (155), Expect = 4e-11, Method: Composition-based stats.
Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 78 IECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRST 124
+ECAVCL + G++ R LP C H FHA+CVD WL ++ CP+CR T
Sbjct: 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLT 52
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 62 KLPCYEYLAKSKGSSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPIC 121
+LP Y + + S C VC+ F R+LP CNH FHA+CVD WL N CPIC
Sbjct: 8 QLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPIC 66
Query: 122 RS 123
R+
Sbjct: 67 RA 68
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 79 ECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICR 122
+C +CL +G+ R LP C H FH CVD WL+TN CPICR
Sbjct: 16 KCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICR 58
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRST 124
S +EC VC + + G+ R LP CNH FH C+ WL + +CP+CR +
Sbjct: 13 GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKS 61
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 80 CAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICR 122
C +C ++ KGD LP C+H FH CV WL + CP+CR
Sbjct: 43 CPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCR 84
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 80 CAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPIC 121
CAVCL+ F D+ + P C H+FH +C+ WL CP+C
Sbjct: 18 CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLC 58
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 79 ECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICR 122
EC +C+D + D L+ C HSF +C+D W + NCPICR
Sbjct: 17 ECCICMD--GRAD---LILPCAHSFCQKCIDKWSDRHRNCPICR 55
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRS 123
+ ++C +C + F + + C HSF + C++ W+ CPICR
Sbjct: 51 ENELQCIICSEYFIEA----VTLNCAHSFCSYCINEWMKRKIECPICRK 95
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRS 123
+ ++C +C + F + + C HSF + C++ W+ CPICR
Sbjct: 51 ENELQCIICSEYFIEA----VTLNCAHSFCSYCINEWMKRKIECPICRK 95
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 33.9 bits (76), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 13/71 (18%)
Query: 50 IGSTSMSRDDVEKLPCYEYLAKSKGSSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVD 109
+ + ++ R+ + L C E A ++ EC V +CNH+FH C+
Sbjct: 37 VDNCAICRNHIXDL-CIECQANQASATSEECTV------------AWGVCNHAFHFHCIS 83
Query: 110 AWLLTNPNCPI 120
WL T CP+
Sbjct: 84 RWLKTRQVCPL 94
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 33.9 bits (76), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 12/56 (21%)
Query: 65 CYEYLAKSKGSSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPI 120
C E A ++ EC V +CNH+FH C+ WL T CP+
Sbjct: 62 CIECQANQASATSEECTV------------AWGVCNHAFHFHCISRWLKTRQVCPL 105
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 33.9 bits (76), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 13/71 (18%)
Query: 50 IGSTSMSRDDVEKLPCYEYLAKSKGSSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVD 109
+ + ++ R+ + L C E A ++ EC V +CNH+FH C+
Sbjct: 29 VDNCAICRNHIMDL-CIECQANQASATSEECTV------------AWGVCNHAFHFHCIS 75
Query: 110 AWLLTNPNCPI 120
WL T CP+
Sbjct: 76 RWLKTRQVCPL 86
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 33.9 bits (76), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 13/71 (18%)
Query: 50 IGSTSMSRDDVEKLPCYEYLAKSKGSSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVD 109
+ + ++ R+ + L C E A ++ EC V +CNH+FH C+
Sbjct: 31 VDNCAICRNHIMDL-CIECQANQASATSEECTV------------AWGVCNHAFHFHCIS 77
Query: 110 AWLLTNPNCPI 120
WL T CP+
Sbjct: 78 RWLKTRQVCPL 88
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 33.9 bits (76), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 13/71 (18%)
Query: 50 IGSTSMSRDDVEKLPCYEYLAKSKGSSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVD 109
+ + ++ R+ + L C E A ++ EC V +CNH+FH C+
Sbjct: 21 VDNCAICRNHIMDL-CIECQANQASATSEECTV------------AWGVCNHAFHFHCIS 67
Query: 110 AWLLTNPNCPI 120
WL T CP+
Sbjct: 68 RWLKTRQVCPL 78
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 33.5 bits (75), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRS 123
+ ++C +C + F + + C HSF + C++ W+ CPICR
Sbjct: 62 ENELQCIICSEYFIEA----VTLNCAHSFCSYCINEWMKRKIECPICRK 106
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 33.5 bits (75), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 12/56 (21%)
Query: 65 CYEYLAKSKGSSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPI 120
C E A ++ EC V +CNH+FH C+ WL T CP+
Sbjct: 51 CIECQANQASATSEECTV------------AWGVCNHAFHFHCISRWLKTRQVCPL 94
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 33.5 bits (75), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 12/56 (21%)
Query: 65 CYEYLAKSKGSSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPI 120
C E A ++ EC V +CNH+FH C+ WL T CP+
Sbjct: 53 CIECQANQASATSEECTV------------AWGVCNHAFHFHCISRWLKTRQVCPL 96
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 33.5 bits (75), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 99 CNHSFHAQCVDAWLLTNPNCPICRS 123
CNHSFH C+ W+ N CP+C+
Sbjct: 48 CNHSFHNCCMSLWVKQNNRCPLCQQ 72
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 80 CAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICR 122
C +CL+ + + LP C H+F C+ W+ NP CP+C+
Sbjct: 8 CPICLE--DPSNYSMALP-CLHAFCYVCITRWIRQNPTCPLCK 47
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 78 IECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPIC 121
+ C +C + FN ++P C+H++ + C+ +L CP C
Sbjct: 23 LRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTC 63
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 74 GSSPIECAVCLDKFN---KGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTAN 126
GS + C +C+D ++ + + + C H F +QC+ L CP CR N
Sbjct: 4 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 59
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 74 GSSPIECAVCLDKFN---KGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTAN 126
GS + C +C+D ++ + + + C H F +QC+ L CP CR N
Sbjct: 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 29.3 bits (64), Expect = 1.4, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 139 DIDVELREGVPTEGIELSDIRIELSDHVSFESSRPNQTDSNPSLLQDSSL 188
D D +++ GV + IE+ RI++ DHVSF+ + D+ +L+D +L
Sbjct: 319 DEDYDIKNGVGAQPIEIKQGRIDI-DHVSFQYN-----DNEAPILKDINL 362
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 78 IECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPN---CPIC 121
+EC +C++ F + L C H+ QC++ L ++ N CP C
Sbjct: 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFC 62
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 75 SSPIECAVCLDKFN---KGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTAN 126
S + C +C+D ++ + + + C H F +QC+ L CP CR N
Sbjct: 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 62
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 75 SSPIECAVCLDKFN---KGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTAN 126
S + C +C+D ++ + + + C H F +QC+ L CP CR N
Sbjct: 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 99 CNHSFHAQCVDAWLLTNPNCPIC 121
C HSF C+ +L T+ CPIC
Sbjct: 30 CLHSFCKTCIVRYLETSKYCPIC 52
>pdb|1F62|A Chain A, Wstf-Phd
Length = 51
Score = 27.3 bits (59), Expect = 5.5, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 80 CAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPN----CPICR 122
C VC K + DK L CN +FH C+ L P+ CP C+
Sbjct: 3 CKVCRKK-GEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQ 48
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 99 CNHSFHAQCVDAWLLTNPNCPIC 121
C HSF C+ +L T+ CPIC
Sbjct: 34 CLHSFCKTCIVRYLETSKYCPIC 56
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 78 IECAVCLDKFNKGDKCRLLPI---CNHSFHAQCVDAWLLTNPNCPICRSTAN 126
+ C +C+D +++ + L + C H F +QC+ L CP CR N
Sbjct: 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 55
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 99 CNHSFHAQCVDAWLLTNPNCPIC 121
C HSF C+ +L T+ CPIC
Sbjct: 34 CLHSFCKTCIVRYLETSKYCPIC 56
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
Length = 226
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 49/127 (38%), Gaps = 31/127 (24%)
Query: 12 LFLGIGALIFIHVCIVARTFRAGLIRNNVGGAMVE----RSSIGSTSMSRDDVEKLPCYE 67
+ LG +L + V F+ + R G MV+ R S S +DDV +L
Sbjct: 118 VVLGDDSLNDCRIIFVDEVFK--IERPGEGSPMVDNPMRRKSGPSCKHCKDDVNRL---- 171
Query: 68 YLAKSKGSSPIECAVCLDKFNKG----DKCRLLPICNHSFHAQCVDAWLLTNPN-----C 118
C VC G DK + C+ +FH C+D L + P+ C
Sbjct: 172 ------------CRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYC 219
Query: 119 PICRSTA 125
P CR+ A
Sbjct: 220 PECRNDA 226
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,927,243
Number of Sequences: 62578
Number of extensions: 176838
Number of successful extensions: 404
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 357
Number of HSP's gapped (non-prelim): 52
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)