Query 040080
Match_columns 192
No_of_seqs 218 out of 1967
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 07:23:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040080.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040080hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.8 1E-18 3.5E-23 119.4 8.2 80 47-127 9-89 (91)
2 1x4j_A Ring finger protein 38; 99.7 5.2E-19 1.8E-23 116.5 2.9 69 59-128 5-73 (75)
3 2ect_A Ring finger protein 126 99.6 4.2E-16 1.4E-20 103.1 5.9 56 75-131 13-68 (78)
4 1iym_A EL5; ring-H2 finger, ub 99.6 1.9E-16 6.4E-21 97.8 3.8 52 75-126 3-54 (55)
5 2kiz_A E3 ubiquitin-protein li 99.6 6.6E-16 2.3E-20 99.8 5.4 53 75-128 12-64 (69)
6 2ep4_A Ring finger protein 24; 99.6 1.1E-15 3.7E-20 100.1 5.7 53 75-128 13-65 (74)
7 2ecl_A Ring-box protein 2; RNF 99.6 4.2E-16 1.4E-20 104.1 3.1 54 76-129 14-78 (81)
8 1v87_A Deltex protein 2; ring- 99.5 5.7E-15 1.9E-19 104.5 6.1 53 76-129 24-96 (114)
9 3dpl_R Ring-box protein 1; ubi 99.5 5.2E-15 1.8E-19 103.6 4.7 53 76-129 36-103 (106)
10 3ng2_A RNF4, snurf, ring finge 99.5 4.3E-15 1.5E-19 96.2 3.5 55 75-130 8-66 (71)
11 2ecm_A Ring finger and CHY zin 99.5 7.6E-15 2.6E-19 90.4 3.5 50 76-126 4-54 (55)
12 2ea6_A Ring finger protein 4; 99.5 7.2E-15 2.5E-19 94.5 3.3 52 75-127 13-68 (69)
13 2xeu_A Ring finger protein 4; 99.5 9.2E-15 3.1E-19 92.7 2.6 53 76-129 2-58 (64)
14 2d8t_A Dactylidin, ring finger 99.4 2.4E-14 8.1E-19 93.0 2.7 51 75-129 13-63 (71)
15 2djb_A Polycomb group ring fin 99.4 1.4E-13 4.7E-18 89.6 5.7 53 75-130 13-65 (72)
16 2ecn_A Ring finger protein 141 99.4 3.5E-14 1.2E-18 91.8 2.7 50 75-129 13-62 (70)
17 1chc_A Equine herpes virus-1 r 99.4 7.1E-14 2.4E-18 89.8 4.1 49 76-127 4-52 (68)
18 4a0k_B E3 ubiquitin-protein li 99.4 1.1E-14 3.7E-19 103.5 0.2 54 76-130 47-115 (117)
19 2d8s_A Cellular modulator of i 99.4 2.1E-13 7.2E-18 90.6 5.0 53 75-129 13-72 (80)
20 2ct2_A Tripartite motif protei 99.4 3E-13 1E-17 91.0 5.4 54 75-129 13-70 (88)
21 2csy_A Zinc finger protein 183 99.4 3.6E-13 1.2E-17 89.5 5.4 48 75-126 13-60 (81)
22 2ecy_A TNF receptor-associated 99.4 3.6E-13 1.2E-17 86.0 4.4 50 75-128 13-63 (66)
23 2ysl_A Tripartite motif-contai 99.4 5.1E-13 1.7E-17 86.9 4.8 51 75-129 18-71 (73)
24 4ayc_A E3 ubiquitin-protein li 99.4 2.7E-13 9.2E-18 99.2 3.3 48 77-128 53-100 (138)
25 2yur_A Retinoblastoma-binding 99.3 8.2E-13 2.8E-17 86.4 4.7 51 75-128 13-65 (74)
26 2ct0_A Non-SMC element 1 homol 99.3 7.4E-13 2.5E-17 86.5 4.4 51 75-128 13-65 (74)
27 1t1h_A Gspef-atpub14, armadill 99.3 1.4E-12 4.8E-17 85.9 4.7 51 75-129 6-57 (78)
28 3lrq_A E3 ubiquitin-protein li 99.3 7.5E-13 2.6E-17 91.6 3.4 51 76-129 21-72 (100)
29 4ap4_A E3 ubiquitin ligase RNF 99.3 8.4E-13 2.9E-17 95.2 3.3 54 75-129 5-62 (133)
30 2ecw_A Tripartite motif-contai 99.3 2.5E-12 8.6E-17 85.7 5.2 50 75-128 17-72 (85)
31 1g25_A CDK-activating kinase a 99.3 2E-12 7E-17 82.3 4.1 52 77-129 3-57 (65)
32 2ecv_A Tripartite motif-contai 99.3 2.8E-12 9.7E-17 85.4 4.6 51 75-129 17-73 (85)
33 2y43_A E3 ubiquitin-protein li 99.3 2.3E-12 8E-17 88.8 4.3 49 77-128 22-70 (99)
34 2egp_A Tripartite motif-contai 99.3 8.9E-13 3E-17 87.0 1.9 50 75-128 10-66 (79)
35 2ckl_A Polycomb group ring fin 99.3 3.2E-12 1.1E-16 89.5 4.6 51 75-128 13-63 (108)
36 2ysj_A Tripartite motif-contai 99.3 5.7E-12 2E-16 79.6 4.9 43 75-121 18-63 (63)
37 3fl2_A E3 ubiquitin-protein li 99.2 4.7E-12 1.6E-16 90.8 4.5 48 76-127 51-99 (124)
38 3ztg_A E3 ubiquitin-protein li 99.2 7.6E-12 2.6E-16 84.9 4.6 49 75-126 11-61 (92)
39 2ecj_A Tripartite motif-contai 99.2 8.3E-12 2.8E-16 77.3 4.2 43 75-121 13-58 (58)
40 4ap4_A E3 ubiquitin ligase RNF 99.2 4.9E-12 1.7E-16 91.1 3.5 54 75-129 70-127 (133)
41 1jm7_A BRCA1, breast cancer ty 99.2 9.7E-12 3.3E-16 87.3 4.1 50 77-130 21-73 (112)
42 2ckl_B Ubiquitin ligase protei 99.2 1.1E-11 3.6E-16 93.2 4.3 50 76-128 53-103 (165)
43 3hct_A TNF receptor-associated 99.2 7.1E-12 2.4E-16 89.2 3.1 50 75-128 16-66 (118)
44 1z6u_A NP95-like ring finger p 99.2 1.9E-11 6.6E-16 90.6 4.0 49 76-128 77-126 (150)
45 1rmd_A RAG1; V(D)J recombinati 99.1 3E-11 1E-15 85.5 3.7 50 77-130 23-73 (116)
46 2kr4_A Ubiquitin conjugation f 99.1 4E-11 1.4E-15 80.5 3.6 50 75-128 12-61 (85)
47 3l11_A E3 ubiquitin-protein li 99.1 1.4E-11 4.8E-16 87.1 1.5 48 76-127 14-62 (115)
48 1e4u_A Transcriptional repress 99.1 1.5E-10 5.2E-15 76.4 5.8 54 75-129 9-64 (78)
49 2kre_A Ubiquitin conjugation f 99.1 5.4E-11 1.8E-15 82.3 3.8 51 75-129 27-77 (100)
50 1wgm_A Ubiquitin conjugation f 99.1 9E-11 3.1E-15 80.8 4.3 51 75-129 20-71 (98)
51 2vje_A E3 ubiquitin-protein li 99.1 5.1E-11 1.7E-15 75.7 2.6 48 76-127 7-57 (64)
52 2vje_B MDM4 protein; proto-onc 99.0 5.1E-11 1.7E-15 75.4 2.0 51 75-127 5-56 (63)
53 3knv_A TNF receptor-associated 99.0 5.7E-11 2E-15 87.1 2.2 49 75-127 29-78 (141)
54 2y1n_A E3 ubiquitin-protein li 99.0 1.2E-10 3.9E-15 98.1 4.3 49 76-128 331-380 (389)
55 1bor_A Transcription factor PM 99.0 7.6E-11 2.6E-15 72.8 2.3 47 75-128 4-50 (56)
56 1jm7_B BARD1, BRCA1-associated 99.0 9.7E-11 3.3E-15 83.1 2.2 47 76-128 21-68 (117)
57 3k1l_B Fancl; UBC, ring, RWD, 99.0 1.1E-10 3.6E-15 96.2 2.1 54 75-128 306-374 (381)
58 3hcs_A TNF receptor-associated 98.9 3.9E-10 1.3E-14 85.0 3.0 51 74-128 15-66 (170)
59 4ic3_A E3 ubiquitin-protein li 98.9 2.5E-10 8.5E-15 74.5 1.7 43 77-127 24-67 (74)
60 2c2l_A CHIP, carboxy terminus 98.9 1.3E-09 4.5E-14 87.6 4.0 51 75-129 206-257 (281)
61 2yu4_A E3 SUMO-protein ligase 98.8 8E-10 2.7E-14 75.4 1.7 51 75-128 5-64 (94)
62 1vyx_A ORF K3, K3RING; zinc-bi 98.8 3.5E-09 1.2E-13 66.2 3.6 49 75-127 4-59 (60)
63 2ecg_A Baculoviral IAP repeat- 98.8 2.9E-09 1E-13 69.5 2.6 43 77-127 25-68 (75)
64 2ea5_A Cell growth regulator w 98.8 6.3E-09 2.2E-13 66.7 3.9 45 75-127 13-58 (68)
65 2f42_A STIP1 homology and U-bo 98.7 4E-09 1.4E-13 80.0 3.3 51 75-129 104-155 (179)
66 1wim_A KIAA0161 protein; ring 98.7 4.2E-09 1.4E-13 71.6 2.8 51 76-127 4-66 (94)
67 2yho_A E3 ubiquitin-protein li 98.6 6.9E-09 2.4E-13 68.5 1.6 44 77-128 18-62 (79)
68 2bay_A PRE-mRNA splicing facto 98.6 1.6E-08 5.6E-13 63.4 2.0 51 77-130 3-53 (61)
69 3htk_C E3 SUMO-protein ligase 98.6 3.8E-08 1.3E-12 78.5 4.1 53 75-130 179-235 (267)
70 3t6p_A Baculoviral IAP repeat- 98.5 2.1E-08 7.1E-13 83.6 1.0 44 76-127 294-338 (345)
71 3vk6_A E3 ubiquitin-protein li 98.3 4.6E-07 1.6E-11 61.5 3.6 46 79-127 3-49 (101)
72 3nw0_A Non-structural maintena 98.3 1E-06 3.5E-11 69.8 5.9 51 76-129 179-231 (238)
73 2ko5_A Ring finger protein Z; 96.3 0.0058 2E-07 40.8 4.8 54 71-129 22-75 (99)
74 2lri_C Autoimmune regulator; Z 95.9 0.0066 2.2E-07 38.1 3.2 48 75-126 10-61 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 95.1 0.017 5.7E-07 38.9 3.3 34 77-111 3-36 (101)
76 1we9_A PHD finger family prote 94.0 0.018 6.2E-07 35.6 1.3 50 75-124 4-58 (64)
77 2k16_A Transcription initiatio 93.3 0.027 9.4E-07 35.9 1.3 52 75-127 16-71 (75)
78 2l2t_A Receptor tyrosine-prote 93.2 0.19 6.4E-06 28.7 4.5 27 3-29 10-36 (44)
79 2l5u_A Chromodomain-helicase-D 91.8 0.11 3.9E-06 31.7 2.6 45 75-123 9-57 (61)
80 2ks1_B Epidermal growth factor 91.5 0.17 5.7E-06 28.9 2.9 23 5-27 13-35 (44)
81 3lqh_A Histone-lysine N-methyl 91.5 0.079 2.7E-06 39.9 2.0 48 78-125 3-64 (183)
82 2yql_A PHD finger protein 21A; 90.9 0.038 1.3E-06 33.2 -0.2 45 75-123 7-55 (56)
83 1f62_A Transcription factor WS 90.7 0.12 4E-06 30.2 1.8 44 79-123 2-49 (51)
84 1wil_A KIAA1045 protein; ring 90.5 0.34 1.2E-05 31.6 3.9 35 75-111 13-47 (89)
85 1mm2_A MI2-beta; PHD, zinc fin 90.3 0.071 2.4E-06 32.6 0.6 47 75-125 7-57 (61)
86 1wep_A PHF8; structural genomi 90.0 0.45 1.5E-05 30.5 4.3 51 76-127 11-66 (79)
87 3o36_A Transcription intermedi 89.8 0.071 2.4E-06 39.9 0.4 47 76-126 3-53 (184)
88 2puy_A PHD finger protein 21A; 89.8 0.05 1.7E-06 33.1 -0.4 48 76-127 4-55 (60)
89 3u5n_A E3 ubiquitin-protein li 89.8 0.054 1.9E-06 41.4 -0.3 47 75-125 5-55 (207)
90 2jwa_A Receptor tyrosine-prote 89.4 0.81 2.8E-05 26.0 4.5 7 5-11 14-20 (44)
91 2kgg_A Histone demethylase jar 88.6 0.46 1.6E-05 27.9 3.3 44 79-122 4-52 (52)
92 2ku3_A Bromodomain-containing 88.2 0.25 8.5E-06 31.2 2.0 50 75-124 14-66 (71)
93 2vpb_A Hpygo1, pygopus homolog 88.1 0.45 1.5E-05 29.4 3.2 34 76-109 7-41 (65)
94 2lv9_A Histone-lysine N-methyl 87.9 0.2 6.9E-06 33.6 1.6 45 77-123 28-75 (98)
95 1weo_A Cellulose synthase, cat 87.6 3 0.0001 27.4 6.9 52 76-127 15-70 (93)
96 1fp0_A KAP-1 corepressor; PHD 87.5 0.38 1.3E-05 31.7 2.7 46 75-124 23-72 (88)
97 2ysm_A Myeloid/lymphoid or mix 87.4 0.21 7.3E-06 34.1 1.5 47 75-122 5-55 (111)
98 1xwh_A Autoimmune regulator; P 87.0 0.2 6.9E-06 31.0 1.1 46 75-124 6-55 (66)
99 2l43_A N-teminal domain from h 86.6 0.29 9.9E-06 32.2 1.7 53 75-127 23-78 (88)
100 3v43_A Histone acetyltransfera 86.2 0.21 7.1E-06 34.3 0.9 45 79-123 63-111 (112)
101 2lbm_A Transcriptional regulat 86.0 0.94 3.2E-05 32.5 4.3 46 74-123 60-116 (142)
102 3m62_A Ubiquitin conjugation f 85.5 0.62 2.1E-05 43.4 3.8 51 75-129 889-940 (968)
103 2cs3_A Protein C14ORF4, MY039 85.2 0.6 2.1E-05 30.1 2.6 40 75-114 13-52 (93)
104 1wem_A Death associated transc 85.2 0.48 1.6E-05 30.0 2.2 48 77-126 16-72 (76)
105 2yt5_A Metal-response element- 84.3 0.29 1E-05 30.1 0.8 52 75-126 4-63 (66)
106 2e6r_A Jumonji/ARID domain-con 82.9 0.15 5.1E-06 33.9 -1.0 50 75-125 14-67 (92)
107 2ri7_A Nucleosome-remodeling f 82.9 0.68 2.3E-05 34.0 2.5 48 76-124 7-59 (174)
108 2xb1_A Pygopus homolog 2, B-ce 82.4 0.74 2.5E-05 31.2 2.3 51 77-127 3-64 (105)
109 2ro1_A Transcription intermedi 82.0 0.28 9.5E-06 37.0 0.0 45 77-125 2-50 (189)
110 1weu_A Inhibitor of growth fam 81.9 0.82 2.8E-05 30.3 2.3 46 76-126 35-87 (91)
111 3v43_A Histone acetyltransfera 81.8 2.2 7.7E-05 29.0 4.7 46 77-122 5-62 (112)
112 1iij_A ERBB-2 receptor protein 81.7 0.65 2.2E-05 25.0 1.4 15 4-18 9-23 (35)
113 1wen_A Inhibitor of growth fam 81.5 1.3 4.3E-05 27.8 3.0 46 76-126 15-67 (71)
114 3o70_A PHD finger protein 13; 81.3 0.45 1.5E-05 29.7 0.8 47 75-123 17-66 (68)
115 1wew_A DNA-binding family prot 81.2 0.55 1.9E-05 30.0 1.2 49 76-125 15-73 (78)
116 1wee_A PHD finger family prote 81.0 0.34 1.2E-05 30.4 0.2 49 76-125 15-67 (72)
117 4gne_A Histone-lysine N-methyl 80.5 1.8 6E-05 29.5 3.7 51 72-128 10-66 (107)
118 2klu_A T-cell surface glycopro 80.0 2 6.7E-05 26.5 3.3 11 5-15 12-22 (70)
119 3ql9_A Transcriptional regulat 79.1 2.3 7.8E-05 30.0 4.0 46 75-124 55-111 (129)
120 1wev_A Riken cDNA 1110020M19; 78.7 0.68 2.3E-05 30.4 1.1 51 77-127 16-75 (88)
121 2knc_B Integrin beta-3; transm 78.5 3.2 0.00011 26.6 4.3 19 3-21 11-29 (79)
122 3shb_A E3 ubiquitin-protein li 77.1 0.33 1.1E-05 31.2 -0.8 44 79-123 28-76 (77)
123 3i2d_A E3 SUMO-protein ligase 76.9 2.1 7.3E-05 35.5 3.8 49 78-129 250-302 (371)
124 4fo9_A E3 SUMO-protein ligase 76.5 2 6.8E-05 35.6 3.5 49 78-129 216-268 (360)
125 2e6s_A E3 ubiquitin-protein li 76.1 0.56 1.9E-05 30.0 0.1 44 79-123 28-76 (77)
126 1y02_A CARP2, FYVE-ring finger 75.3 0.46 1.6E-05 33.2 -0.5 49 77-125 19-67 (120)
127 1z2q_A LM5-1; membrane protein 73.5 3 0.0001 26.8 3.1 36 76-111 20-55 (84)
128 3c6w_A P28ING5, inhibitor of g 72.8 1.3 4.5E-05 26.6 1.2 42 77-123 9-57 (59)
129 1joc_A EEA1, early endosomal a 72.3 2.3 7.7E-05 29.7 2.5 34 77-110 69-102 (125)
130 1z60_A TFIIH basal transcripti 72.2 0.97 3.3E-05 27.4 0.5 43 78-121 16-58 (59)
131 3asl_A E3 ubiquitin-protein li 72.2 0.69 2.4E-05 29.0 -0.2 44 79-123 20-68 (70)
132 3ask_A E3 ubiquitin-protein li 72.1 0.96 3.3E-05 35.0 0.5 44 79-123 176-224 (226)
133 2yw8_A RUN and FYVE domain-con 72.1 2.9 9.8E-05 26.8 2.8 36 76-111 18-53 (82)
134 1wfk_A Zinc finger, FYVE domai 72.0 4 0.00014 26.6 3.5 53 75-127 7-66 (88)
135 2rsd_A E3 SUMO-protein ligase 71.6 0.55 1.9E-05 29.1 -0.8 45 78-123 11-64 (68)
136 2vnf_A ING 4, P29ING4, inhibit 71.2 1.4 4.9E-05 26.5 1.1 42 77-123 10-58 (60)
137 2kwj_A Zinc finger protein DPF 71.1 0.5 1.7E-05 32.5 -1.2 48 79-127 60-111 (114)
138 3t7l_A Zinc finger FYVE domain 70.3 2.9 9.8E-05 27.4 2.5 51 77-127 20-76 (90)
139 1vfy_A Phosphatidylinositol-3- 70.2 3.3 0.00011 25.9 2.7 33 78-110 12-44 (73)
140 1x4u_A Zinc finger, FYVE domai 69.4 3.7 0.00013 26.4 2.9 34 76-109 13-46 (84)
141 2k9j_B Integrin beta-3; transm 69.0 12 0.00041 20.9 4.6 11 4-14 11-21 (43)
142 2ysm_A Myeloid/lymphoid or mix 68.4 0.99 3.4E-05 30.7 -0.1 45 79-124 56-104 (111)
143 3j1r_A Archaeal adhesion filam 67.8 9.4 0.00032 18.8 3.8 19 7-25 6-24 (26)
144 2kwj_A Zinc finger protein DPF 67.1 4.5 0.00015 27.5 3.1 45 78-122 2-59 (114)
145 1dvp_A HRS, hepatocyte growth 66.5 3 0.0001 31.8 2.3 34 77-110 161-194 (220)
146 3kqi_A GRC5, PHD finger protei 66.4 2.5 8.6E-05 26.6 1.5 48 80-127 12-64 (75)
147 2o35_A Hypothetical protein DU 64.0 2.6 8.8E-05 28.2 1.2 12 103-114 43-54 (105)
148 3fyb_A Protein of unknown func 64.0 2.6 8.9E-05 28.2 1.2 11 103-113 42-52 (104)
149 2knc_B Integrin beta-3; transm 63.9 11 0.00036 24.1 4.2 18 3-20 15-32 (79)
150 2g6q_A Inhibitor of growth pro 63.7 1.7 5.9E-05 26.4 0.3 42 77-123 11-59 (62)
151 3zyq_A Hepatocyte growth facto 63.7 3.6 0.00012 31.6 2.3 50 77-126 164-221 (226)
152 3o7a_A PHD finger protein 13 v 63.4 1.4 4.8E-05 25.6 -0.1 41 82-123 8-51 (52)
153 3mjh_B Early endosome antigen 59.7 1.8 6.1E-05 23.1 -0.1 14 77-90 5-18 (34)
154 1zbd_B Rabphilin-3A; G protein 59.2 5.5 0.00019 28.1 2.4 49 75-124 53-107 (134)
155 1q90_G Cytochrome B6F complex 58.2 20 0.00068 19.2 3.9 27 4-30 4-30 (37)
156 2gmg_A Hypothetical protein PF 57.6 2.2 7.5E-05 28.9 0.0 24 99-127 73-96 (105)
157 2jmi_A Protein YNG1, ING1 homo 57.5 3.7 0.00013 27.0 1.1 44 75-123 24-75 (90)
158 1wyh_A SLIM 2, skeletal muscle 57.4 8.5 0.00029 23.2 2.8 41 78-128 6-46 (72)
159 3mpx_A FYVE, rhogef and PH dom 57.0 2.3 7.7E-05 35.6 0.0 50 76-125 374-430 (434)
160 2a20_A Regulating synaptic mem 56.0 1.1 3.7E-05 27.1 -1.5 48 75-123 7-59 (62)
161 1g47_A Pinch protein; LIM doma 54.4 13 0.00043 22.7 3.3 44 76-129 10-53 (77)
162 2l9u_A Receptor tyrosine-prote 53.7 23 0.0008 18.7 4.7 6 6-11 9-14 (40)
163 2cu8_A Cysteine-rich protein 2 53.7 11 0.00038 23.1 2.9 42 77-129 9-50 (76)
164 3f6q_B LIM and senescent cell 53.6 7.9 0.00027 23.2 2.2 43 77-129 11-53 (72)
165 1x4k_A Skeletal muscle LIM-pro 52.6 9.6 0.00033 23.0 2.5 41 78-128 6-46 (72)
166 1x4l_A Skeletal muscle LIM-pro 51.7 14 0.00047 22.3 3.1 43 77-129 5-49 (72)
167 1x61_A Thyroid receptor intera 51.4 14 0.00048 22.2 3.1 40 78-127 6-45 (72)
168 2d8v_A Zinc finger FYVE domain 51.4 12 0.00042 23.0 2.7 32 75-111 6-38 (67)
169 2co8_A NEDD9 interacting prote 51.1 17 0.00057 22.8 3.5 44 75-129 13-56 (82)
170 1x63_A Skeletal muscle LIM-pro 51.0 14 0.00046 22.9 3.1 41 78-128 16-56 (82)
171 2jvx_A NF-kappa-B essential mo 50.0 4.1 0.00014 20.7 0.3 12 116-127 4-15 (28)
172 2klu_A T-cell surface glycopro 47.7 39 0.0013 20.7 4.5 20 6-25 10-29 (70)
173 1x68_A FHL5 protein; four-and- 47.0 16 0.00055 22.3 2.9 40 78-127 6-47 (76)
174 1zfo_A LAsp-1; LIM domain, zin 44.7 8.1 0.00028 19.7 1.0 28 78-108 4-31 (31)
175 1iml_A CRIP, cysteine rich int 44.1 11 0.00036 23.2 1.7 9 118-126 30-38 (76)
176 1wd2_A Ariadne-1 protein homol 44.1 2.6 8.9E-05 25.4 -1.2 35 78-112 7-45 (60)
177 2jmo_A Parkin; IBR, E3 ligase, 44.0 1.9 6.4E-05 27.6 -2.0 19 98-118 55-73 (80)
178 1x4i_A Inhibitor of growth pro 43.6 9.7 0.00033 23.5 1.4 48 77-127 6-58 (70)
179 2knc_A Integrin alpha-IIB; tra 42.9 50 0.0017 19.4 5.6 21 4-24 14-34 (54)
180 3arc_H Photosystem II reaction 42.1 30 0.001 21.0 3.3 6 4-9 31-36 (65)
181 2zet_C Melanophilin; complex, 41.5 15 0.0005 26.5 2.3 47 76-124 67-117 (153)
182 3a1b_A DNA (cytosine-5)-methyl 40.3 20 0.0007 26.0 2.9 36 75-114 77-114 (159)
183 2dj7_A Actin-binding LIM prote 39.8 31 0.0011 21.4 3.4 40 76-126 14-53 (80)
184 2d8y_A Eplin protein; LIM doma 39.6 39 0.0013 21.3 4.0 42 77-129 15-56 (91)
185 1a7i_A QCRP2 (LIM1); LIM domai 39.3 14 0.00048 22.8 1.7 42 77-129 7-48 (81)
186 2pv0_B DNA (cytosine-5)-methyl 38.4 23 0.00079 29.5 3.3 46 75-124 91-148 (386)
187 3arc_M Photosystem II reaction 38.3 47 0.0016 17.7 3.5 17 4-20 7-23 (36)
188 2d8z_A Four and A half LIM dom 38.2 28 0.00097 20.6 3.0 40 78-129 6-45 (70)
189 2l3k_A Rhombotin-2, linker, LI 38.0 17 0.00059 24.6 2.2 27 79-107 10-36 (123)
190 1vf5_G Protein PET G; photosyn 37.8 19 0.00066 19.3 1.8 24 6-29 6-29 (37)
191 2k1a_A Integrin alpha-IIB; sin 37.7 53 0.0018 18.2 4.4 12 12-23 17-28 (42)
192 2zxe_G FXYD10, phospholemman-l 37.1 27 0.00092 21.9 2.6 11 13-23 26-36 (74)
193 3kv4_A PHD finger protein 8; e 36.8 8.1 0.00028 32.9 0.3 49 79-127 6-59 (447)
194 1nyp_A Pinch protein; LIM doma 36.0 28 0.00097 20.3 2.7 39 78-128 6-44 (66)
195 2egq_A FHL1 protein; LIM domai 35.9 29 0.00099 21.0 2.8 41 78-128 16-59 (77)
196 2ehe_A Four and A half LIM dom 35.9 25 0.00084 21.7 2.5 40 78-127 16-55 (82)
197 2dar_A PDZ and LIM domain prot 34.5 23 0.0008 22.4 2.2 42 76-129 24-65 (90)
198 1x64_A Alpha-actinin-2 associa 34.3 46 0.0016 20.8 3.7 42 76-129 24-65 (89)
199 2ct7_A Ring finger protein 31; 33.8 2.9 9.8E-05 27.0 -2.4 28 95-122 45-74 (86)
200 2jne_A Hypothetical protein YF 32.2 11 0.00039 25.0 0.4 41 78-127 33-73 (101)
201 2xjy_A Rhombotin-2; oncoprotei 32.1 37 0.0013 22.9 3.1 51 75-127 27-78 (131)
202 1vf5_E Protein PET L; photosyn 31.5 59 0.002 16.9 3.5 23 1-23 1-23 (32)
203 3kv5_D JMJC domain-containing 31.2 33 0.0011 29.5 3.2 48 77-125 37-89 (488)
204 2iyb_E Testin, TESS, TES; LIM 30.9 32 0.0011 20.2 2.3 41 79-129 4-46 (65)
205 1m3v_A FLIN4, fusion of the LI 30.7 28 0.00096 23.5 2.2 50 77-128 32-82 (122)
206 1zza_A Stannin, AG8_1; helix, 30.3 1E+02 0.0035 19.2 5.5 13 15-27 26-38 (90)
207 2d8x_A Protein pinch; LIM doma 30.1 34 0.0012 20.2 2.4 41 77-129 5-45 (70)
208 2cup_A Skeletal muscle LIM-pro 30.0 44 0.0015 21.3 3.1 45 77-126 33-77 (101)
209 1x62_A C-terminal LIM domain p 29.9 43 0.0015 20.5 2.9 40 77-128 15-54 (79)
210 2cor_A Pinch protein; LIM doma 29.6 66 0.0023 19.6 3.8 40 77-128 15-54 (79)
211 2pk7_A Uncharacterized protein 28.9 10 0.00034 23.5 -0.3 19 110-128 3-21 (69)
212 3j00_Z Cell division protein F 28.3 1.3E+02 0.0043 19.7 5.9 24 6-29 4-27 (98)
213 3mkr_B Coatomer subunit alpha; 28.2 60 0.002 26.3 4.1 41 77-123 262-302 (320)
214 2jny_A Uncharacterized BCR; st 28.1 9.2 0.00031 23.6 -0.6 20 109-128 4-23 (67)
215 2ku7_A MLL1 PHD3-CYP33 RRM chi 27.8 67 0.0023 21.4 3.9 27 99-125 8-45 (140)
216 3vhs_A ATPase wrnip1; zinc fin 27.5 16 0.00055 18.0 0.4 10 117-126 8-17 (29)
217 2l4z_A DNA endonuclease RBBP8, 27.3 39 0.0013 23.0 2.5 39 77-126 61-99 (123)
218 1v6g_A Actin binding LIM prote 25.7 57 0.0019 19.9 2.9 38 78-127 16-53 (81)
219 1loi_A Cyclic 3',5'-AMP specif 25.6 3.7 0.00013 19.7 -2.1 12 102-113 6-17 (26)
220 2cur_A Skeletal muscle LIM-pro 25.2 30 0.001 20.4 1.5 38 78-127 6-43 (69)
221 2fiy_A Protein FDHE homolog; F 25.1 5.6 0.00019 32.2 -2.6 49 75-124 180-231 (309)
222 2jrp_A Putative cytoplasmic pr 25.0 32 0.0011 22.0 1.5 13 78-90 3-15 (81)
223 1rut_X Flinc4, fusion protein 23.8 36 0.0012 24.8 1.9 9 117-125 99-107 (188)
224 2cuq_A Four and A half LIM dom 23.6 50 0.0017 20.0 2.3 38 78-127 16-53 (80)
225 1wig_A KIAA1808 protein; LIM d 23.3 48 0.0017 19.9 2.2 37 78-126 6-42 (73)
226 1lko_A Rubrerythrin all-iron(I 23.2 24 0.00081 26.2 0.8 22 97-124 159-180 (191)
227 2kpi_A Uncharacterized protein 22.0 30 0.001 20.3 0.9 13 76-88 9-21 (56)
228 2lq6_A Bromodomain-containing 21.2 39 0.0013 21.7 1.4 33 77-110 17-50 (87)
229 3mv2_A Coatomer subunit alpha; 21.2 65 0.0022 26.1 3.0 40 78-123 272-311 (325)
230 3pwf_A Rubrerythrin; non heme 21.0 53 0.0018 23.8 2.3 22 96-124 141-162 (170)
231 1v54_D Cytochrome C oxidase su 20.6 1.1E+02 0.0037 21.8 3.8 19 6-24 81-99 (147)
232 2das_A Zinc finger MYM-type pr 20.3 1.2E+02 0.004 18.2 3.2 36 76-111 19-55 (62)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=119.39 Aligned_cols=80 Identities=28% Similarity=0.671 Sum_probs=69.2
Q ss_pred ccCCCCCCCCHHHHhcCCceEeeccCC-CCCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCccccccc
Q 040080 47 RSSIGSTSMSRDDVEKLPCYEYLAKSK-GSSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTA 125 (192)
Q Consensus 47 ~~~~~~~~~~~~~i~~l~~~~~~~~~~-~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~ 125 (192)
.......+++++.++.||.+.+..... ......|+||++.|..++.+..++ |||.||..||..|+..+.+||+||+++
T Consensus 9 ~~~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~ 87 (91)
T 2l0b_A 9 SHMVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMF 87 (91)
T ss_dssp CCSSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBS
T ss_pred CCCcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccC
Confidence 445567889999999999998876543 355678999999999888888899 999999999999999999999999988
Q ss_pred cc
Q 040080 126 NS 127 (192)
Q Consensus 126 ~~ 127 (192)
..
T Consensus 88 ~~ 89 (91)
T 2l0b_A 88 PP 89 (91)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=5.2e-19 Score=116.49 Aligned_cols=69 Identities=41% Similarity=0.924 Sum_probs=61.5
Q ss_pred HHhcCCceEeeccCCCCCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccC
Q 040080 59 DVEKLPCYEYLAKSKGSSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSR 128 (192)
Q Consensus 59 ~i~~l~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 128 (192)
.++.||.+++.......+...|+||++.|..++.+..++ |+|.||..||..|+..+.+||+||+++.+.
T Consensus 5 ~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 5 SSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 467889998887776677889999999999988888899 999999999999999999999999988653
No 3
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.62 E-value=4.2e-16 Score=103.11 Aligned_cols=56 Identities=38% Similarity=0.968 Sum_probs=49.5
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccCCCC
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSRRFG 131 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~ 131 (192)
.....|+||++.|..+..+..++ |+|.||..||..|+..+.+||+||+.+......
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSC
T ss_pred CCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcccC
Confidence 45678999999999888888888 999999999999999999999999999776543
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.62 E-value=1.9e-16 Score=97.82 Aligned_cols=52 Identities=48% Similarity=1.141 Sum_probs=46.0
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccc
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTAN 126 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 126 (192)
.+..+|+||++.+..++.+..++.|||.||..||.+|+..+.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3456899999999888777778679999999999999999999999999874
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=6.6e-16 Score=99.77 Aligned_cols=53 Identities=43% Similarity=1.065 Sum_probs=47.5
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccC
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSR 128 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 128 (192)
.....|+||++.|..+..+..++ |||.||..||..|+..+.+||+||+.+...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 45678999999998888888899 999999999999999999999999998654
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=100.07 Aligned_cols=53 Identities=34% Similarity=0.814 Sum_probs=47.5
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccC
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSR 128 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 128 (192)
.....|+||++.|..+..+..++ |+|.||..||..|+..+.+||+||+++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 44678999999999888888888 999999999999999989999999998653
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=4.2e-16 Score=104.12 Aligned_cols=54 Identities=31% Similarity=0.680 Sum_probs=43.1
Q ss_pred CCCcccccCccccC-----------CCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccCC
Q 040080 76 SPIECAVCLDKFNK-----------GDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSRR 129 (192)
Q Consensus 76 ~~~~C~IC~~~~~~-----------~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 129 (192)
++..|+||++.|.. ++.+..++.|+|.||..||.+|+..+.+||+||+++....
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQR 78 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchhh
Confidence 35568888888854 3445555559999999999999999999999999987654
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.55 E-value=5.7e-15 Score=104.54 Aligned_cols=53 Identities=26% Similarity=0.666 Sum_probs=42.5
Q ss_pred CCCcccccCccccCCC---------------ceEEcCCCCCcccHHhHHHHH-----cCCCCCcccccccccCC
Q 040080 76 SPIECAVCLDKFNKGD---------------KCRLLPICNHSFHAQCVDAWL-----LTNPNCPICRSTANSRR 129 (192)
Q Consensus 76 ~~~~C~IC~~~~~~~~---------------~~~~~~~C~H~fh~~Ci~~wl-----~~~~~CP~Cr~~~~~~~ 129 (192)
.+..|+||++.|..+. .+..++ |+|.||..||..|+ ..+.+||+||+.+..+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence 4568999999996543 333667 99999999999999 45678999999887653
No 9
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.53 E-value=5.2e-15 Score=103.63 Aligned_cols=53 Identities=26% Similarity=0.569 Sum_probs=44.0
Q ss_pred CCCcccccCccccCCC---------------ceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccCC
Q 040080 76 SPIECAVCLDKFNKGD---------------KCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSRR 129 (192)
Q Consensus 76 ~~~~C~IC~~~~~~~~---------------~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 129 (192)
++..|+||++.|...- .+..++ |+|.||..||..||..+.+||+||+++....
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~~ 103 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEFQK 103 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCCEEE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcceeec
Confidence 4677999999987541 245567 9999999999999999999999999976543
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.52 E-value=4.3e-15 Score=96.24 Aligned_cols=55 Identities=29% Similarity=0.726 Sum_probs=46.0
Q ss_pred CCCCcccccCccccCC----CceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccCCC
Q 040080 75 SSPIECAVCLDKFNKG----DKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSRRF 130 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~----~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 130 (192)
.+...|+||++.+..+ .....++ |||.||..||..|+..+.+||+||+++.....
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 4567899999998653 4456677 99999999999999999999999999976543
No 11
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.51 E-value=7.6e-15 Score=90.43 Aligned_cols=50 Identities=26% Similarity=0.765 Sum_probs=42.5
Q ss_pred CCCcccccCccccCC-CceEEcCCCCCcccHHhHHHHHcCCCCCcccccccc
Q 040080 76 SPIECAVCLDKFNKG-DKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTAN 126 (192)
Q Consensus 76 ~~~~C~IC~~~~~~~-~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 126 (192)
+...|+||++.+..+ ..+..++ |||.||..||..|+..+.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 456799999998654 3466677 9999999999999998899999999764
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=7.2e-15 Score=94.55 Aligned_cols=52 Identities=29% Similarity=0.688 Sum_probs=43.8
Q ss_pred CCCCcccccCccccCC----CceEEcCCCCCcccHHhHHHHHcCCCCCccccccccc
Q 040080 75 SSPIECAVCLDKFNKG----DKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANS 127 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~----~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 127 (192)
.+...|+||++.+..+ ..+..++ |||.||..||..|+..+.+||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4567899999998653 3446677 99999999999999999999999998864
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.48 E-value=9.2e-15 Score=92.66 Aligned_cols=53 Identities=28% Similarity=0.696 Sum_probs=44.3
Q ss_pred CCCcccccCccccCC----CceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccCC
Q 040080 76 SPIECAVCLDKFNKG----DKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSRR 129 (192)
Q Consensus 76 ~~~~C~IC~~~~~~~----~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 129 (192)
+...|+||++.+..+ ..+..++ |||.||..|+..|+..+.+||+||+++....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 356799999998653 3446677 9999999999999999999999999987643
No 14
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2.4e-14 Score=92.99 Aligned_cols=51 Identities=29% Similarity=0.582 Sum_probs=43.4
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccCC
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSRR 129 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 129 (192)
.+...|+||++.+... ..++ |||.||..||..|+..+.+||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPEDF 63 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHHH
T ss_pred CCCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHhh
Confidence 4567899999998554 5567 9999999999999999999999999987543
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.4e-13 Score=89.59 Aligned_cols=53 Identities=19% Similarity=0.515 Sum_probs=43.6
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccCCC
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSRRF 130 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 130 (192)
.+...|+||++.+..+ +..++ |||.||..||..|+..+.+||+||+++.....
T Consensus 13 ~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 13 TPYILCSICKGYLIDA--TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP 65 (72)
T ss_dssp CGGGSCTTTSSCCSSC--EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSCS
T ss_pred CCCCCCCCCChHHHCc--CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcccc
Confidence 4567899999998653 33346 99999999999999888999999999876543
No 16
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=3.5e-14 Score=91.81 Aligned_cols=50 Identities=38% Similarity=0.926 Sum_probs=43.2
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccCC
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSRR 129 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 129 (192)
.+...|+||++.+.. ..++ |||.||..|+..|+..+.+||+||+++....
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 456789999999865 5677 9999999999999998999999999987543
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.43 E-value=7.1e-14 Score=89.77 Aligned_cols=49 Identities=33% Similarity=0.897 Sum_probs=42.2
Q ss_pred CCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCccccccccc
Q 040080 76 SPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANS 127 (192)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 127 (192)
....|+||++.+.. ....++ |||.||..|+..|+..+.+||+||+++..
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 45679999999854 346778 99999999999999989999999998864
No 18
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.43 E-value=1.1e-14 Score=103.49 Aligned_cols=54 Identities=26% Similarity=0.626 Sum_probs=1.0
Q ss_pred CCCcccccCccccCC-------------C--ceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccCCC
Q 040080 76 SPIECAVCLDKFNKG-------------D--KCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSRRF 130 (192)
Q Consensus 76 ~~~~C~IC~~~~~~~-------------~--~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 130 (192)
.+..|+||++.|... + .+..++ |+|.||..||.+|+..+.+||+||+++...++
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~~k~ 115 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEFQKY 115 (117)
T ss_dssp CC--------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeeeeecc
Confidence 456899999999652 1 122245 99999999999999999999999999865543
No 19
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=2.1e-13 Score=90.64 Aligned_cols=53 Identities=23% Similarity=0.588 Sum_probs=44.0
Q ss_pred CCCCcccccCccccCCCceEEcCCCC-----CcccHHhHHHHHcCC--CCCcccccccccCC
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICN-----HSFHAQCVDAWLLTN--PNCPICRSTANSRR 129 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~-----H~fh~~Ci~~wl~~~--~~CP~Cr~~~~~~~ 129 (192)
.+...|.||++++..++.+ ++| |+ |.||..||++|+..+ .+||+||+.+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 4567899999999877665 578 96 999999999999875 48999999986543
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=3e-13 Score=91.03 Aligned_cols=54 Identities=26% Similarity=0.736 Sum_probs=44.7
Q ss_pred CCCCcccccCccccCCCc-eEEcCCCCCcccHHhHHHHHcCC---CCCcccccccccCC
Q 040080 75 SSPIECAVCLDKFNKGDK-CRLLPICNHSFHAQCVDAWLLTN---PNCPICRSTANSRR 129 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~-~~~~~~C~H~fh~~Ci~~wl~~~---~~CP~Cr~~~~~~~ 129 (192)
.+...|+||++.|...+. ...++ |||.||..|+..|+..+ .+||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred cCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 456789999999977553 56677 99999999999999875 67999999886543
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=3.6e-13 Score=89.53 Aligned_cols=48 Identities=25% Similarity=0.671 Sum_probs=41.6
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccc
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTAN 126 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 126 (192)
.....|+||++.+..+ ..++ |||.||..||..|+....+||+||.++.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP---VVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE---EECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe---eEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4567899999998553 4577 9999999999999998889999999985
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=3.6e-13 Score=86.04 Aligned_cols=50 Identities=22% Similarity=0.570 Sum_probs=41.3
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHc-CCCCCcccccccccC
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLL-TNPNCPICRSTANSR 128 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~~~~ 128 (192)
.+...|+||++.+..+ ..++ |||.||..||..|+. .+.+||+||+++..+
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP---KQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESSC---CCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcCe---eECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 4467899999999765 2356 999999999999995 467899999998754
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=5.1e-13 Score=86.88 Aligned_cols=51 Identities=24% Similarity=0.645 Sum_probs=41.5
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHc---CCCCCcccccccccCC
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLL---TNPNCPICRSTANSRR 129 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~---~~~~CP~Cr~~~~~~~ 129 (192)
.+...|+||++.+..+ ..++ |||.||..||..|+. .+..||+||+++....
T Consensus 18 ~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 18 QEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCBCTTTCSBCSSE---EECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred ccCCEeccCCcccCCe---EEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 4567899999998643 4567 999999999999997 3557999999986543
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.36 E-value=2.7e-13 Score=99.20 Aligned_cols=48 Identities=33% Similarity=0.922 Sum_probs=41.6
Q ss_pred CCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccC
Q 040080 77 PIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSR 128 (192)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 128 (192)
+..|+||++.|..+ ..++ |||.||..||..|+..+.+||+||.++...
T Consensus 53 ~~~C~iC~~~~~~~---~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLN-CAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSSE---EEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cCCCcccCcccCCc---eECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 45799999998654 5577 999999999999999999999999998654
No 25
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.34 E-value=8.2e-13 Score=86.37 Aligned_cols=51 Identities=25% Similarity=0.707 Sum_probs=41.1
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCC--CCCcccccccccC
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTN--PNCPICRSTANSR 128 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~--~~CP~Cr~~~~~~ 128 (192)
.+...|+||++.|..+ ..++.|||.||..||..|+..+ .+||+||+++...
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 4567899999999764 4455599999999999999765 6899999976443
No 26
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=7.4e-13 Score=86.46 Aligned_cols=51 Identities=25% Similarity=0.707 Sum_probs=42.1
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCC--CCCcccccccccC
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTN--PNCPICRSTANSR 128 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~--~~CP~Cr~~~~~~ 128 (192)
....+|+||++.+..+..+. . |+|.||..||.+||+++ .+||+||+++...
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~--~-C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE--T-CGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS--S-SCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCCcCcchhhHcccCCccC--C-CCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 34567999999998764333 4 99999999999999887 7899999998654
No 27
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.32 E-value=1.4e-12 Score=85.93 Aligned_cols=51 Identities=14% Similarity=0.428 Sum_probs=42.7
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcC-CCCCcccccccccCC
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLT-NPNCPICRSTANSRR 129 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~ 129 (192)
.+...|+||++.|..+ ..++ |||.||..||..|+.. +.+||+||.++....
T Consensus 6 ~~~~~C~IC~~~~~~P---v~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP---VIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57 (78)
T ss_dssp SSSSSCTTTSCCCSSE---EEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred cccCCCCCccccccCC---EEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence 4567899999998654 4467 9999999999999987 778999999986543
No 28
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.31 E-value=7.5e-13 Score=91.62 Aligned_cols=51 Identities=24% Similarity=0.667 Sum_probs=42.0
Q ss_pred CCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCC-CCCcccccccccCC
Q 040080 76 SPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTN-PNCPICRSTANSRR 129 (192)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~~~~~~ 129 (192)
+...|+||++.|..+ +..++ |||.||..||..|+..+ .+||+||.++....
T Consensus 21 ~~~~C~IC~~~~~~p--~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA--RLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72 (100)
T ss_dssp HHTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCccCCccccCc--cccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence 456799999998653 33367 99999999999999887 68999999986644
No 29
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.30 E-value=8.4e-13 Score=95.16 Aligned_cols=54 Identities=30% Similarity=0.708 Sum_probs=45.6
Q ss_pred CCCCcccccCccccCC----CceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccCC
Q 040080 75 SSPIECAVCLDKFNKG----DKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSRR 129 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~----~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 129 (192)
.+...|+||++.|..+ ..+..++ |||.||..||..|+..+.+||+||+.+....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 4567899999998653 4456677 9999999999999999999999999987654
No 30
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.30 E-value=2.5e-12 Score=85.67 Aligned_cols=50 Identities=28% Similarity=0.672 Sum_probs=42.2
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcC------CCCCcccccccccC
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLT------NPNCPICRSTANSR 128 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~------~~~CP~Cr~~~~~~ 128 (192)
.+...|+||++.+..+ ..++ |||.||..|+..|+.. ...||+||..+...
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred ccCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 4567899999998665 4577 9999999999999987 56799999988654
No 31
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.29 E-value=2e-12 Score=82.25 Aligned_cols=52 Identities=23% Similarity=0.551 Sum_probs=41.2
Q ss_pred CCcccccCc-cccCCCce-EEcCCCCCcccHHhHHHHHcC-CCCCcccccccccCC
Q 040080 77 PIECAVCLD-KFNKGDKC-RLLPICNHSFHAQCVDAWLLT-NPNCPICRSTANSRR 129 (192)
Q Consensus 77 ~~~C~IC~~-~~~~~~~~-~~~~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~ 129 (192)
+..|+||++ .+..+... ..++ |||.||..||..|+.. +..||+||.++....
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 567999999 77665433 3466 9999999999999765 467999999987644
No 32
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=2.8e-12 Score=85.41 Aligned_cols=51 Identities=27% Similarity=0.711 Sum_probs=42.4
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcC------CCCCcccccccccCC
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLT------NPNCPICRSTANSRR 129 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~------~~~CP~Cr~~~~~~~ 129 (192)
.+...|+||++.+..+ ..++ |||.||..|+..|+.. ...||+||..+....
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP---LSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCTTTCSCCSSC---BCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred cCCCCCCCCCcccCCc---eeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 4567899999998664 4467 9999999999999977 678999999987643
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.28 E-value=2.3e-12 Score=88.77 Aligned_cols=49 Identities=24% Similarity=0.729 Sum_probs=41.2
Q ss_pred CCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccC
Q 040080 77 PIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSR 128 (192)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 128 (192)
...|+||++.|..+ +...+ |||.||..||..|+..+.+||+||..+...
T Consensus 22 ~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 22 LLRCGICFEYFNIA--MIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTEP 70 (99)
T ss_dssp HTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCCcccCChhhCCc--CEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence 56799999998653 33336 999999999999999889999999998753
No 34
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.27 E-value=8.9e-13 Score=86.96 Aligned_cols=50 Identities=22% Similarity=0.614 Sum_probs=41.8
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcC-------CCCCcccccccccC
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLT-------NPNCPICRSTANSR 128 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-------~~~CP~Cr~~~~~~ 128 (192)
.+...|+||++.|..+ ..++ |||.||..||..|+.. ...||+||.++...
T Consensus 10 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred ccCCCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 4567899999999765 3467 9999999999999986 56799999998654
No 35
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.27 E-value=3.2e-12 Score=89.47 Aligned_cols=51 Identities=27% Similarity=0.670 Sum_probs=42.6
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccC
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSR 128 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 128 (192)
.+...|+||++.+.. .+...+ |||.||..||..|+..+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFID--ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhC--cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 346779999999855 344447 999999999999999999999999998754
No 36
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=5.7e-12 Score=79.59 Aligned_cols=43 Identities=28% Similarity=0.719 Sum_probs=36.1
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHc---CCCCCccc
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLL---TNPNCPIC 121 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~---~~~~CP~C 121 (192)
.+...|+||++.+..+ ..++ |||.||..||..|+. .+.+||+|
T Consensus 18 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSC---EECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCe---EEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4567899999998754 4567 999999999999997 45679998
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.24 E-value=4.7e-12 Score=90.78 Aligned_cols=48 Identities=21% Similarity=0.555 Sum_probs=40.4
Q ss_pred CCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCC-CCccccccccc
Q 040080 76 SPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNP-NCPICRSTANS 127 (192)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~~~~ 127 (192)
+...|+||++.|..+ ..++ |||.||..||..|+..+. .||+||.++..
T Consensus 51 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRP---ITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCc---EEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 356799999998654 4567 999999999999998644 89999999976
No 38
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.22 E-value=7.6e-12 Score=84.93 Aligned_cols=49 Identities=24% Similarity=0.727 Sum_probs=40.3
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCC--CCCcccccccc
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTN--PNCPICRSTAN 126 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~--~~CP~Cr~~~~ 126 (192)
.+...|+||++.|..+ ..++.|||.||..||..|+..+ ..||+||.++.
T Consensus 11 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 5567899999999765 4455599999999999999653 57999999874
No 39
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=8.3e-12 Score=77.34 Aligned_cols=43 Identities=28% Similarity=0.893 Sum_probs=35.5
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHc---CCCCCccc
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLL---TNPNCPIC 121 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~---~~~~CP~C 121 (192)
.+...|+||++.+..+ ..++ |||.||..||..|+. .+.+||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4567899999999765 4467 999999999999954 46679998
No 40
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.22 E-value=4.9e-12 Score=91.09 Aligned_cols=54 Identities=30% Similarity=0.708 Sum_probs=44.7
Q ss_pred CCCCcccccCccccCC----CceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccCC
Q 040080 75 SSPIECAVCLDKFNKG----DKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSRR 129 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~----~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 129 (192)
.+...|+||++.+... .....++ |||.||..||.+|+..+++||+||+++..+.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 4567899999998642 3345667 9999999999999999999999999987654
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.20 E-value=9.7e-12 Score=87.30 Aligned_cols=50 Identities=26% Similarity=0.693 Sum_probs=41.3
Q ss_pred CCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCC---CCcccccccccCCC
Q 040080 77 PIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNP---NCPICRSTANSRRF 130 (192)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~---~CP~Cr~~~~~~~~ 130 (192)
...|+||++.+..+ ..++ |||.||..||..|+..+. +||+||.++.....
T Consensus 21 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred CCCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence 45799999998665 3467 999999999999998754 79999999876543
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.19 E-value=1.1e-11 Score=93.20 Aligned_cols=50 Identities=34% Similarity=0.732 Sum_probs=41.2
Q ss_pred CCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcC-CCCCcccccccccC
Q 040080 76 SPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLT-NPNCPICRSTANSR 128 (192)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~ 128 (192)
....|+||++.|.. .+..++ |||.||..||..|+.. +..||+||.++...
T Consensus 53 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 53 SELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVSK 103 (165)
T ss_dssp HHHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred CCCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCCc
Confidence 34579999999865 344447 9999999999999987 77899999998543
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.19 E-value=7.1e-12 Score=89.16 Aligned_cols=50 Identities=24% Similarity=0.554 Sum_probs=42.2
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCC-CCcccccccccC
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNP-NCPICRSTANSR 128 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~~~~~ 128 (192)
.+...|+||++.+..+ ..++ |||.||..||..|+..+. +||+||.++...
T Consensus 16 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 16 ESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 5567899999998654 4567 999999999999998754 899999998764
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.15 E-value=1.9e-11 Score=90.57 Aligned_cols=49 Identities=18% Similarity=0.507 Sum_probs=41.2
Q ss_pred CCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCC-CCcccccccccC
Q 040080 76 SPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNP-NCPICRSTANSR 128 (192)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~~~~~ 128 (192)
+...|+||++.|..+ ..++ |||.||..||..|+.... +||+||.++...
T Consensus 77 ~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP---VTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCC---EEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 346799999998654 4477 999999999999998754 799999998765
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.12 E-value=3e-11 Score=85.53 Aligned_cols=50 Identities=24% Similarity=0.545 Sum_probs=41.9
Q ss_pred CCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcC-CCCCcccccccccCCC
Q 040080 77 PIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLT-NPNCPICRSTANSRRF 130 (192)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~~ 130 (192)
...|+||++.+..+ ..++ |||.||..||..|+.. +.+||+||.++.....
T Consensus 23 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 23 SISCQICEHILADP---VETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp HTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCcHhcCc---EEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence 56799999998654 4467 9999999999999987 6789999999876543
No 46
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.11 E-value=4e-11 Score=80.48 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=43.6
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccC
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSR 128 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 128 (192)
.+...|+||++.|..+ ..++ |||.|+..||..|+..+.+||+||.++...
T Consensus 12 p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP---VRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred chheECcccCchhcCC---eECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 4567899999999765 5677 999999999999999888999999988654
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.11 E-value=1.4e-11 Score=87.10 Aligned_cols=48 Identities=29% Similarity=0.750 Sum_probs=40.6
Q ss_pred CCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcC-CCCCccccccccc
Q 040080 76 SPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLT-NPNCPICRSTANS 127 (192)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 127 (192)
++..|+||++.+..+ ..++ |||.||..||..|+.. +..||+||..+..
T Consensus 14 ~~~~C~iC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVEP---VTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSSC---EECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCce---eEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 356799999998654 4567 9999999999999977 6679999999864
No 48
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.09 E-value=1.5e-10 Score=76.39 Aligned_cols=54 Identities=22% Similarity=0.491 Sum_probs=41.3
Q ss_pred CCCCcccccCccccCCCceE-EcCCCCCcccHHhHHHHHcC-CCCCcccccccccCC
Q 040080 75 SSPIECAVCLDKFNKGDKCR-LLPICNHSFHAQCVDAWLLT-NPNCPICRSTANSRR 129 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~-~~~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~ 129 (192)
.++..|+||++.+...+... .++ |||.||..|+..|+.. +..||+||+++..+.
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred ccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 45678999999886432222 235 9999999999998754 567999999987654
No 49
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.09 E-value=5.4e-11 Score=82.25 Aligned_cols=51 Identities=16% Similarity=0.164 Sum_probs=43.9
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccCC
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSRR 129 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 129 (192)
.+...|+||++.|..+ ..++ |||.|+..||..|+..+.+||+||.++....
T Consensus 27 p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP---VRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTESM 77 (100)
T ss_dssp STTTBCTTTCSBCSSE---EEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTTS
T ss_pred cHhhCCcCccCcccCC---eECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChhh
Confidence 4567899999999765 5577 9999999999999998889999999987543
No 50
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.07 E-value=9e-11 Score=80.83 Aligned_cols=51 Identities=14% Similarity=0.176 Sum_probs=43.8
Q ss_pred CCCCcccccCccccCCCceEEcCCCC-CcccHHhHHHHHcCCCCCcccccccccCC
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICN-HSFHAQCVDAWLLTNPNCPICRSTANSRR 129 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~-H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 129 (192)
.+.+.|+||++.|..+ ..++ || |.|+..||..|+..+.+||+||.++....
T Consensus 20 p~~~~CpI~~~~m~dP---V~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~ 71 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP---VVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ 71 (98)
T ss_dssp CTTTBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTT
T ss_pred cHhcCCcCccccccCC---eECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChhh
Confidence 4567899999999765 5577 99 99999999999998889999999987643
No 51
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.06 E-value=5.1e-11 Score=75.69 Aligned_cols=48 Identities=21% Similarity=0.507 Sum_probs=39.6
Q ss_pred CCCcccccCccccCCCceEEc--CCCCCc-ccHHhHHHHHcCCCCCccccccccc
Q 040080 76 SPIECAVCLDKFNKGDKCRLL--PICNHS-FHAQCVDAWLLTNPNCPICRSTANS 127 (192)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~--~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~ 127 (192)
++..|+||++...+. ..+ | |||. |+..|+..|...+..||+||+++..
T Consensus 7 ~~~~C~IC~~~~~~~---~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKNG---CIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSCE---EEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCCE---EEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 456799999986432 444 8 9999 8999999999888899999998853
No 52
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.05 E-value=5.1e-11 Score=75.44 Aligned_cols=51 Identities=18% Similarity=0.369 Sum_probs=39.8
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCc-ccHHhHHHHHcCCCCCccccccccc
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHS-FHAQCVDAWLLTNPNCPICRSTANS 127 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~ 127 (192)
.....|.||++...+. .+..+| |||. ||..|+..|...+..||+||+++..
T Consensus 5 ~~~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred CcCCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 3456799999986432 122238 9998 9999999999888899999998853
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.04 E-value=5.7e-11 Score=87.13 Aligned_cols=49 Identities=20% Similarity=0.548 Sum_probs=40.9
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCC-CCccccccccc
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNP-NCPICRSTANS 127 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~-~CP~Cr~~~~~ 127 (192)
.+...|+||++.+..+ ..++ |||.||..||..|+.... +||+||.++..
T Consensus 29 ~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 4567899999998665 4467 999999999999998654 79999998743
No 54
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.03 E-value=1.2e-10 Score=98.13 Aligned_cols=49 Identities=22% Similarity=0.723 Sum_probs=41.5
Q ss_pred CCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHc-CCCCCcccccccccC
Q 040080 76 SPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLL-TNPNCPICRSTANSR 128 (192)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~-~~~~CP~Cr~~~~~~ 128 (192)
....|+||++.+.. ...+| |||.||..|+..|+. .+.+||+||+++...
T Consensus 331 ~~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 34689999999744 36678 999999999999998 678899999998664
No 55
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.03 E-value=7.6e-11 Score=72.82 Aligned_cols=47 Identities=28% Similarity=0.639 Sum_probs=38.7
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccC
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSR 128 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 128 (192)
.+...|+||++.|..+ ..++ |||.||..|+..| ...||+||+.+...
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 4567799999999765 5577 9999999999884 56799999988654
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.00 E-value=9.7e-11 Score=83.09 Aligned_cols=47 Identities=26% Similarity=0.651 Sum_probs=39.3
Q ss_pred CCCcccccCccccCCCceEEc-CCCCCcccHHhHHHHHcCCCCCcccccccccC
Q 040080 76 SPIECAVCLDKFNKGDKCRLL-PICNHSFHAQCVDAWLLTNPNCPICRSTANSR 128 (192)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~-~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 128 (192)
+...|+||++.|..+ ..+ + |||.||..||..|+. ..||+||..+...
T Consensus 21 ~~~~C~IC~~~~~~p---v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 21 KLLRCSRCTNILREP---VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWIQ 68 (117)
T ss_dssp HTTSCSSSCSCCSSC---BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred hCCCCCCCChHhhCc---cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence 356799999999665 445 6 999999999999987 7899999998543
No 57
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.98 E-value=1.1e-10 Score=96.22 Aligned_cols=54 Identities=22% Similarity=0.621 Sum_probs=41.0
Q ss_pred CCCCcccccCccccCCCceE----EcCCCCCcccHHhHHHHHcCC-----------CCCcccccccccC
Q 040080 75 SSPIECAVCLDKFNKGDKCR----LLPICNHSFHAQCVDAWLLTN-----------PNCPICRSTANSR 128 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~----~~~~C~H~fh~~Ci~~wl~~~-----------~~CP~Cr~~~~~~ 128 (192)
....+|+||++.+.....+. ..+.|+|.||..|+.+|+++. .+||+||+++..+
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 45678999999987633222 123499999999999999752 4699999998643
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.92 E-value=3.9e-10 Score=84.96 Aligned_cols=51 Identities=24% Similarity=0.518 Sum_probs=42.4
Q ss_pred CCCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCC-CCCcccccccccC
Q 040080 74 GSSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTN-PNCPICRSTANSR 128 (192)
Q Consensus 74 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~~~~~ 128 (192)
..+...|+||++.+..+ ..++ |||.||..||..|+..+ .+||+||.++...
T Consensus 15 ~~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 15 LESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 35567899999998665 4467 99999999999999764 4899999988764
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.92 E-value=2.5e-10 Score=74.50 Aligned_cols=43 Identities=28% Similarity=0.705 Sum_probs=36.4
Q ss_pred CCcccccCccccCCCceEEcCCCCCc-ccHHhHHHHHcCCCCCccccccccc
Q 040080 77 PIECAVCLDKFNKGDKCRLLPICNHS-FHAQCVDAWLLTNPNCPICRSTANS 127 (192)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~ 127 (192)
...|+||++.+.. ...+| |||. ||..|+..| ..||+||+++..
T Consensus 24 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 4579999998744 35678 9999 999999998 789999998864
No 60
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.85 E-value=1.3e-09 Score=87.61 Aligned_cols=51 Identities=10% Similarity=0.215 Sum_probs=42.4
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcC-CCCCcccccccccCC
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLT-NPNCPICRSTANSRR 129 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~ 129 (192)
.....|+||++.|..+ ..++ |||.||..||..|+.. +.+||+||.++....
T Consensus 206 ~~~~~c~i~~~~~~dP---v~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 206 PDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ 257 (281)
T ss_dssp CSTTBCTTTCSBCSSE---EECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred CcccCCcCcCCHhcCC---eECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchhc
Confidence 4577899999999665 5577 9999999999999976 445999999986543
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=8e-10 Score=75.40 Aligned_cols=51 Identities=20% Similarity=0.505 Sum_probs=39.4
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCC------CCCcc--cccc-cccC
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTN------PNCPI--CRST-ANSR 128 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~------~~CP~--Cr~~-~~~~ 128 (192)
.....|+||++.|..+ + .++.|||.|+..||..|+..+ .+||+ |+.. +...
T Consensus 5 ~~~~~CPI~~~~~~dP--V-~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~ 64 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP--V-KNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS 64 (94)
T ss_dssp SSCCBCTTTCSBCSSE--E-EESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGG
T ss_pred CcEeECcCcCchhcCC--E-EcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHh
Confidence 3467899999999654 3 343399999999999999764 47999 9876 5443
No 62
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.79 E-value=3.5e-09 Score=66.21 Aligned_cols=49 Identities=24% Similarity=0.687 Sum_probs=37.5
Q ss_pred CCCCcccccCccccCCCceEEcCCCCC-----cccHHhHHHHHcC--CCCCccccccccc
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNH-----SFHAQCVDAWLLT--NPNCPICRSTANS 127 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H-----~fh~~Ci~~wl~~--~~~CP~Cr~~~~~ 127 (192)
.+...|.||++... +.. .+| |.+ .||..|+..|+.. +.+||+||.++..
T Consensus 4 ~~~~~CrIC~~~~~--~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECS--CCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCC--Cce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 45668999999843 233 466 664 8999999999965 5779999998753
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=2.9e-09 Score=69.46 Aligned_cols=43 Identities=28% Similarity=0.682 Sum_probs=35.0
Q ss_pred CCcccccCccccCCCceEEcCCCCCc-ccHHhHHHHHcCCCCCccccccccc
Q 040080 77 PIECAVCLDKFNKGDKCRLLPICNHS-FHAQCVDAWLLTNPNCPICRSTANS 127 (192)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~ 127 (192)
...|+||++.+... ..+| |||. ||..|+.. ...||+||.++..
T Consensus 25 ~~~C~IC~~~~~~~---~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCB---CCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCE---EEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence 45699999987543 5578 9999 99999965 3689999998865
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=6.3e-09 Score=66.69 Aligned_cols=45 Identities=31% Similarity=0.764 Sum_probs=37.0
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCc-ccHHhHHHHHcCCCCCccccccccc
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHS-FHAQCVDAWLLTNPNCPICRSTANS 127 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~ 127 (192)
.+...|.||++... .+..+| |||. ||..|+.. ...||+||+++..
T Consensus 13 ~~~~~C~IC~~~~~---~~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTV---NWVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCC---CCEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCC---CEEEEC-CCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 44678999999853 457788 9999 99999984 4689999998865
No 65
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.74 E-value=4e-09 Score=80.00 Aligned_cols=51 Identities=10% Similarity=0.184 Sum_probs=42.4
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCC-CCCcccccccccCC
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTN-PNCPICRSTANSRR 129 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~-~~CP~Cr~~~~~~~ 129 (192)
.....||||++.|..+ ..++ |||.|+..||..|+..+ .+||+|+.++....
T Consensus 104 p~~f~CPI~~elm~DP---V~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~ 155 (179)
T 2f42_A 104 PDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQ 155 (179)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred cHhhcccCccccCCCC---eECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChhh
Confidence 5677899999999765 5567 99999999999999763 57999999886543
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.73 E-value=4.2e-09 Score=71.65 Aligned_cols=51 Identities=18% Similarity=0.541 Sum_probs=40.4
Q ss_pred CCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcC--------CCCCcc--cccc--ccc
Q 040080 76 SPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLT--------NPNCPI--CRST--ANS 127 (192)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~--------~~~CP~--Cr~~--~~~ 127 (192)
+...|+||++.+..+..+...+ |||.||..|+..|+.. .-.||. |+.. +..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 66 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE 66 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence 4567999999987765555557 9999999999999863 135999 9988 544
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.64 E-value=6.9e-09 Score=68.48 Aligned_cols=44 Identities=27% Similarity=0.742 Sum_probs=36.2
Q ss_pred CCcccccCccccCCCceEEcCCCCCc-ccHHhHHHHHcCCCCCcccccccccC
Q 040080 77 PIECAVCLDKFNKGDKCRLLPICNHS-FHAQCVDAWLLTNPNCPICRSTANSR 128 (192)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 128 (192)
...|+||++.+. ....+| |||. ||..|+..| ..||+||.++...
T Consensus 18 ~~~C~IC~~~~~---~~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEI---NSTFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBC---CEEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccC---cEEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 457999999864 346778 9999 999999887 3899999988654
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.58 E-value=1.6e-08 Score=63.36 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=41.8
Q ss_pred CCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccCCC
Q 040080 77 PIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSRRF 130 (192)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 130 (192)
...|+||++.+.++ +...+ |||.|...||.+|+..+.+||+++.++.....
T Consensus 3 ~~~CpIs~~~m~dP--V~~~~-sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 3 HMLCAISGKVPRRP--VLSPK-SRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI 53 (61)
T ss_dssp -CCCTTTCSCCSSE--EEETT-TTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred eEEecCCCCCCCCC--EEeCC-CCcEEcHHHHHHHHHhCCCCcCCcCCCChhhc
Confidence 35799999999754 33326 99999999999999988889999999876553
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.56 E-value=3.8e-08 Score=78.46 Aligned_cols=53 Identities=21% Similarity=0.530 Sum_probs=42.0
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCC--CCCcc--cccccccCCC
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTN--PNCPI--CRSTANSRRF 130 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~--~~CP~--Cr~~~~~~~~ 130 (192)
.....||||++.|.. .+.... |||.|+..||..|+..+ .+||+ ||..+.....
T Consensus 179 ~~el~CPIcl~~f~D--PVts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL 235 (267)
T 3htk_C 179 KIELTCPITCKPYEA--PLISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDF 235 (267)
T ss_dssp BCCSBCTTTSSBCSS--EEEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGE
T ss_pred ceeeECcCccCcccC--CeeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhC
Confidence 345679999999955 454456 99999999999999764 46999 9998866543
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.49 E-value=2.1e-08 Score=83.59 Aligned_cols=44 Identities=32% Similarity=0.796 Sum_probs=37.0
Q ss_pred CCCcccccCccccCCCceEEcCCCCCc-ccHHhHHHHHcCCCCCccccccccc
Q 040080 76 SPIECAVCLDKFNKGDKCRLLPICNHS-FHAQCVDAWLLTNPNCPICRSTANS 127 (192)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~~C~H~-fh~~Ci~~wl~~~~~CP~Cr~~~~~ 127 (192)
+...|+||++.+.. ...+| |||. ||..|+..| ..||+||.++..
T Consensus 294 ~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 35679999999754 35678 9999 999999988 679999998864
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.29 E-value=4.6e-07 Score=61.50 Aligned_cols=46 Identities=24% Similarity=0.508 Sum_probs=37.5
Q ss_pred cccccCccccCCCceEEcCCCCCcccHHhHHHHHcC-CCCCccccccccc
Q 040080 79 ECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLT-NPNCPICRSTANS 127 (192)
Q Consensus 79 ~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 127 (192)
.|.+|--.+. ...+..| |+|+||.+|+..|.++ .++||.|+.++..
T Consensus 3 fC~~C~~Pi~--iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCS--EEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeE--EEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 4788877763 3457788 9999999999999855 6889999998854
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.28 E-value=1e-06 Score=69.76 Aligned_cols=51 Identities=22% Similarity=0.531 Sum_probs=41.1
Q ss_pred CCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCC--CCcccccccccCC
Q 040080 76 SPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNP--NCPICRSTANSRR 129 (192)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~--~CP~Cr~~~~~~~ 129 (192)
....|.||.+-+..+. .-+.|+|.||..|+..|++++. .||.|+..|....
T Consensus 179 ~i~~C~iC~~iv~~g~---~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQ---SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 231 (238)
T ss_dssp TCCBCTTTCSBCSSCE---ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCC
T ss_pred CCCcCcchhhHHhCCc---ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 4678999999987662 2334999999999999998754 7999999986653
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.35 E-value=0.0058 Score=40.75 Aligned_cols=54 Identities=22% Similarity=0.461 Sum_probs=41.5
Q ss_pred cCCCCCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccCC
Q 040080 71 KSKGSSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSRR 129 (192)
Q Consensus 71 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 129 (192)
.....+...|-.||-..+. +.....|.+|..|+...|.....||+|..++..+-
T Consensus 22 d~s~~G~~nCKsCWf~~k~-----LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 22 DATHLGPQFCKSCWFENKG-----LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKL 75 (99)
T ss_dssp SCCCSCCCCCCSSCSCCSS-----EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCS
T ss_pred CccccCcccChhhccccCC-----eeeecchhhHHHHHHHHHhhccCCcccCCcCCcce
Confidence 3344667789999987532 23315599999999999988999999999997653
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.88 E-value=0.0066 Score=38.09 Aligned_cols=48 Identities=23% Similarity=0.409 Sum_probs=34.0
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCC----CCCcccccccc
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTN----PNCPICRSTAN 126 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~----~~CP~Cr~~~~ 126 (192)
.....|.||.+. ++. ..-..|...||..|+++.+..- -.||.|.....
T Consensus 10 ~~~~~C~vC~~~---~~l-l~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 10 APGARCGVCGDG---TDV-LRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp CTTCCCTTTSCC---TTC-EECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred CCCCCcCCCCCC---CeE-EECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 345679999854 443 3334499999999999887653 24999976543
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.11 E-value=0.017 Score=38.88 Aligned_cols=34 Identities=18% Similarity=0.427 Sum_probs=25.2
Q ss_pred CCcccccCccccCCCceEEcCCCCCcccHHhHHHH
Q 040080 77 PIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAW 111 (192)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w 111 (192)
+..|.||.+.+.......-+. |+|.||..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 467999998653332333377 9999999999984
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=93.99 E-value=0.018 Score=35.56 Aligned_cols=50 Identities=22% Similarity=0.536 Sum_probs=33.9
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHc-----CCCCCcccccc
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLL-----TNPNCPICRST 124 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~ 124 (192)
.+...|+||...+..+...+.-..|...||..|+.--.. ..-.||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 445679999998865444444445999999999864221 23459999763
No 77
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=93.35 E-value=0.027 Score=35.91 Aligned_cols=52 Identities=19% Similarity=0.335 Sum_probs=35.2
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcC----CCCCccccccccc
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLT----NPNCPICRSTANS 127 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~~~~ 127 (192)
.+...|.||..... +...+.-..|...||..|+..-... .-.||.|+..+..
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 44556999988753 3334444459999999999764432 2349999887654
No 78
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=93.16 E-value=0.19 Score=28.69 Aligned_cols=27 Identities=19% Similarity=0.011 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040080 3 MAIIISVIFLFLGIGALIFIHVCIVAR 29 (192)
Q Consensus 3 ~~iil~~~~~~~~i~~l~~~~~~~~~~ 29 (192)
.+|+.+++..+++++++.+..++++++
T Consensus 10 ~aIA~gVVgGv~~v~ii~~~~~~~~RR 36 (44)
T 2l2t_A 10 PLIAAGVIGGLFILVIVGLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEeehHHHHHHHHHHHHHHHHhhh
Confidence 355666665455555544444344433
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=91.81 E-value=0.11 Score=31.70 Aligned_cols=45 Identities=27% Similarity=0.620 Sum_probs=31.3
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcC----CCCCccccc
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLT----NPNCPICRS 123 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~ 123 (192)
..+..|.+|... + .+..-..|...||..|+..-+.. .-.||.|+.
T Consensus 9 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 446679999873 3 33444449999999999875533 234999975
No 80
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=91.51 E-value=0.17 Score=28.93 Aligned_cols=23 Identities=9% Similarity=-0.063 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 040080 5 IIISVIFLFLGIGALIFIHVCIV 27 (192)
Q Consensus 5 iil~~~~~~~~i~~l~~~~~~~~ 27 (192)
|+.+++..+++++++++..++++
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~ 35 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFM 35 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeehhHHHHHHHHHHHHHHHHh
Confidence 44455544444444444333333
No 81
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=91.50 E-value=0.079 Score=39.89 Aligned_cols=48 Identities=19% Similarity=0.405 Sum_probs=33.9
Q ss_pred CcccccCccccCCCc---eEEcCCCCCcccHHhHHH------HHc-----CCCCCccccccc
Q 040080 78 IECAVCLDKFNKGDK---CRLLPICNHSFHAQCVDA------WLL-----TNPNCPICRSTA 125 (192)
Q Consensus 78 ~~C~IC~~~~~~~~~---~~~~~~C~H~fh~~Ci~~------wl~-----~~~~CP~Cr~~~ 125 (192)
..|+||...|..++. .+.-..|...||..|+.- -+. ..-.||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 459999999987752 444445999999999842 111 145799998754
No 82
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.93 E-value=0.038 Score=33.21 Aligned_cols=45 Identities=29% Similarity=0.578 Sum_probs=30.6
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcC----CCCCccccc
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLT----NPNCPICRS 123 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~ 123 (192)
..+..|.+|... +..+. -..|...||..|+.+-+.. .-.||.|+.
T Consensus 7 ~~~~~C~vC~~~---g~ll~-Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLM-CDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEE-CSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEE-cCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 456679999875 43333 3349999999999865433 223988864
No 83
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=90.70 E-value=0.12 Score=30.22 Aligned_cols=44 Identities=34% Similarity=0.687 Sum_probs=28.4
Q ss_pred cccccCccccCCCceEEcCCCCCcccHHhHHHHHcC----CCCCccccc
Q 040080 79 ECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLT----NPNCPICRS 123 (192)
Q Consensus 79 ~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~ 123 (192)
.|.||...-..+ .+..-..|...||..|+.+=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488888754333 33333449999999999754433 224999964
No 84
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=90.46 E-value=0.34 Score=31.58 Aligned_cols=35 Identities=20% Similarity=0.409 Sum_probs=22.8
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHH
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAW 111 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w 111 (192)
..+..|.||-.- ...+.... ..|+-+||..|+.+-
T Consensus 13 ~~D~~C~VC~~~-t~~~l~pC-RvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEVW-TAESLFPC-RVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCCC-CSSCCSSC-SSSSSCCCHHHHHHH
T ss_pred CCCcccCccccc-cccceecc-ccccccccHhhcccc
Confidence 346679999742 22222222 239999999999985
No 85
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=90.33 E-value=0.071 Score=32.63 Aligned_cols=47 Identities=30% Similarity=0.558 Sum_probs=31.3
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcC----CCCCccccccc
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLT----NPNCPICRSTA 125 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~~ 125 (192)
.....|.+|... ++. ..-..|...||..|+.+-+.. .-.||.|+...
T Consensus 7 ~~~~~C~vC~~~---g~l-l~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GEL-LCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---SSC-BCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---CCE-EEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 456679999863 333 333349999999999864433 22499997643
No 86
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=90.02 E-value=0.45 Score=30.47 Aligned_cols=51 Identities=24% Similarity=0.548 Sum_probs=32.3
Q ss_pred CCCcccccCccccCCCceEEcCCCCCcccHHhHHHH---Hc--CCCCCccccccccc
Q 040080 76 SPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAW---LL--TNPNCPICRSTANS 127 (192)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w---l~--~~~~CP~Cr~~~~~ 127 (192)
....| ||...+......+.-..|...||..|+.-- .. ..-.||.|+....+
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccCC
Confidence 34456 898887533344444449999999999421 11 23459999876543
No 87
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=89.82 E-value=0.071 Score=39.94 Aligned_cols=47 Identities=28% Similarity=0.510 Sum_probs=32.7
Q ss_pred CCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcC----CCCCcccccccc
Q 040080 76 SPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLT----NPNCPICRSTAN 126 (192)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~~~ 126 (192)
++..|.+|... ++. ..-..|...||..|+.+-+.. .-.||.|+..-.
T Consensus 3 ~~~~C~~C~~~---g~l-l~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNG---GEL-LCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCC---SSC-EECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCC---Cee-eecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 35679999854 443 333449999999999876654 234999987543
No 88
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=89.81 E-value=0.05 Score=33.14 Aligned_cols=48 Identities=27% Similarity=0.515 Sum_probs=32.8
Q ss_pred CCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcC----CCCCccccccccc
Q 040080 76 SPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLT----NPNCPICRSTANS 127 (192)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~~~~ 127 (192)
.+..|.+|... +..+. -..|...||..|+.+=+.. .-.||.|......
T Consensus 4 ~~~~C~vC~~~---g~ll~-Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~ 55 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLM-CDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLK 55 (60)
T ss_dssp CCSSCTTTCCC---SSCEE-CSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEE-cCCCCcCEECCcCCCCcCCCCCCceEChhccChhhc
Confidence 35679999874 43333 3349999999999864433 2249999876544
No 89
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=89.78 E-value=0.054 Score=41.43 Aligned_cols=47 Identities=30% Similarity=0.511 Sum_probs=33.1
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCC----CCCccccccc
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTN----PNCPICRSTA 125 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~----~~CP~Cr~~~ 125 (192)
..+..|.+|... + .+..-..|...||..|+.+-+... -.||.|+..-
T Consensus 5 ~~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 445679999854 3 344444599999999998766542 3499998744
No 90
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=89.38 E-value=0.81 Score=26.01 Aligned_cols=7 Identities=43% Similarity=0.411 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 040080 5 IIISVIF 11 (192)
Q Consensus 5 iil~~~~ 11 (192)
|+.+++.
T Consensus 14 Ia~~vVG 20 (44)
T 2jwa_A 14 IISAVVG 20 (44)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 4444444
No 91
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=88.62 E-value=0.46 Score=27.86 Aligned_cols=44 Identities=18% Similarity=0.260 Sum_probs=28.6
Q ss_pred cccccCccccCCCceEEcC-CCCCcccHHhHHHH----HcCCCCCcccc
Q 040080 79 ECAVCLDKFNKGDKCRLLP-ICNHSFHAQCVDAW----LLTNPNCPICR 122 (192)
Q Consensus 79 ~C~IC~~~~~~~~~~~~~~-~C~H~fh~~Ci~~w----l~~~~~CP~Cr 122 (192)
.|.+|...+..+...+.-. .|...||..|+.-- ...+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4788888876554444444 48889999998421 12355688885
No 92
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=88.21 E-value=0.25 Score=31.17 Aligned_cols=50 Identities=18% Similarity=0.475 Sum_probs=33.0
Q ss_pred CCCCcccccCccc-cCCCceEEcCCCCCcccHHhHHHHHcC--CCCCcccccc
Q 040080 75 SSPIECAVCLDKF-NKGDKCRLLPICNHSFHAQCVDAWLLT--NPNCPICRST 124 (192)
Q Consensus 75 ~~~~~C~IC~~~~-~~~~~~~~~~~C~H~fh~~Ci~~wl~~--~~~CP~Cr~~ 124 (192)
.+...|.||...- ...+.+..-..|.-.||..|+..-..- .-.||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 4567799998753 233445554559999999999753211 2349999763
No 93
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=88.12 E-value=0.45 Score=29.42 Aligned_cols=34 Identities=24% Similarity=0.607 Sum_probs=25.2
Q ss_pred CCCcccccCccccCCCceEEcC-CCCCcccHHhHH
Q 040080 76 SPIECAVCLDKFNKGDKCRLLP-ICNHSFHAQCVD 109 (192)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~-~C~H~fh~~Ci~ 109 (192)
....|++|...+......+.-. .|.-.||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 3456999999987665555544 599999999983
No 94
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=87.94 E-value=0.2 Score=33.64 Aligned_cols=45 Identities=18% Similarity=0.305 Sum_probs=29.8
Q ss_pred CCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcC---CCCCccccc
Q 040080 77 PIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLT---NPNCPICRS 123 (192)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~---~~~CP~Cr~ 123 (192)
...| ||......+..+.--. |.-.||..|+..=... .-.||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~-C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDK-CSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTT-TCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCcEEEcCC-CCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3457 8987765554444444 9999999998653222 235999974
No 95
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=87.64 E-value=3 Score=27.36 Aligned_cols=52 Identities=19% Similarity=0.372 Sum_probs=34.9
Q ss_pred CCCcccccCccccCC---CceEEcCCCCCcccHHhHHHHHcC-CCCCccccccccc
Q 040080 76 SPIECAVCLDKFNKG---DKCRLLPICNHSFHAQCVDAWLLT-NPNCPICRSTANS 127 (192)
Q Consensus 76 ~~~~C~IC~~~~~~~---~~~~~~~~C~H~fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 127 (192)
....|.||-+.+... +.-..--.|+--.|..|++-=.+. ++.||-|++....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 456799999986422 211111227777899999754443 7789999998753
No 96
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=87.48 E-value=0.38 Score=31.67 Aligned_cols=46 Identities=28% Similarity=0.584 Sum_probs=32.1
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcC----CCCCcccccc
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLT----NPNCPICRST 124 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~ 124 (192)
.....|.+|... ++. ..-..|.-.||..|+.+=+.. .-.||.|+..
T Consensus 23 ~n~~~C~vC~~~---g~L-L~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---GDL-VMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---SCC-EECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---CCE-EECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 456679999975 433 333348899999999775544 2249999864
No 97
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=87.43 E-value=0.21 Score=34.12 Aligned_cols=47 Identities=30% Similarity=0.582 Sum_probs=30.9
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcC----CCCCcccc
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLT----NPNCPICR 122 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~~~CP~Cr 122 (192)
.++..|.||.+.-...+.+.-.. |+..||..|+...+.. .-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~-C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTT-CGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSS-SCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCC-CCCCcChHHhCCccccccccCccCCcCC
Confidence 45678999988733222244344 9999999999876642 22377664
No 98
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=87.00 E-value=0.2 Score=31.00 Aligned_cols=46 Identities=30% Similarity=0.564 Sum_probs=31.2
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcC----CCCCcccccc
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLT----NPNCPICRST 124 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~ 124 (192)
..+..|.||... ++. ..-..|...||..|+.+-+.. .-.||.|...
T Consensus 6 ~~~~~C~vC~~~---g~l-l~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---GEL-ICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---SSC-EECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---CCE-EEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 346679999864 433 333349999999999864433 2249999753
No 99
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=86.57 E-value=0.29 Score=32.20 Aligned_cols=53 Identities=17% Similarity=0.441 Sum_probs=34.5
Q ss_pred CCCCcccccCccc-cCCCceEEcCCCCCcccHHhHHHHHcC--CCCCccccccccc
Q 040080 75 SSPIECAVCLDKF-NKGDKCRLLPICNHSFHAQCVDAWLLT--NPNCPICRSTANS 127 (192)
Q Consensus 75 ~~~~~C~IC~~~~-~~~~~~~~~~~C~H~fh~~Ci~~wl~~--~~~CP~Cr~~~~~ 127 (192)
.++..|.||...- ...+.+..-..|.-.||..|+..-+.- .-.||.|......
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 4566799999753 222344444559999999999753211 2349999876543
No 100
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=86.17 E-value=0.21 Score=34.33 Aligned_cols=45 Identities=31% Similarity=0.659 Sum_probs=29.9
Q ss_pred cccccCccccCCCceEEcCCCCCcccHHhHHHHHcC----CCCCccccc
Q 040080 79 ECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLT----NPNCPICRS 123 (192)
Q Consensus 79 ~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~ 123 (192)
.|.||...-.....+..-..|...||..|+.+-+.. .-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 578887653333344444459999999999765544 234999975
No 101
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=86.01 E-value=0.94 Score=32.51 Aligned_cols=46 Identities=22% Similarity=0.484 Sum_probs=32.5
Q ss_pred CCCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHc-----------CCCCCccccc
Q 040080 74 GSSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLL-----------TNPNCPICRS 123 (192)
Q Consensus 74 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~-----------~~~~CP~Cr~ 123 (192)
...+..|.+|.+- ++. ..-..|...||..||.+=+. ..-.||.|+.
T Consensus 60 Dg~~d~C~vC~~G---G~L-lcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GNL-ICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCC---SSE-EECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCC---CcE-EeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3456779999975 443 33344999999999997552 1335999974
No 102
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=85.48 E-value=0.62 Score=43.40 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=42.7
Q ss_pred CCCCcccccCccccCCCceEEcCCCC-CcccHHhHHHHHcCCCCCcccccccccCC
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICN-HSFHAQCVDAWLLTNPNCPICRSTANSRR 129 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~-H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 129 (192)
.+.+.|||-++-|.++ ..+| -| +.|-..+|..|+.++.+||.=|.++....
T Consensus 889 P~~F~cPIs~~lM~DP---Vilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~ 940 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDP---VILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLED 940 (968)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred cHHhCCcchhhHHhCC---eEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCccc
Confidence 5577899999998665 5577 76 58999999999999999999999887643
No 103
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=85.23 E-value=0.6 Score=30.10 Aligned_cols=40 Identities=18% Similarity=0.468 Sum_probs=30.1
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcC
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLT 114 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~ 114 (192)
.....|.+|.+.++...-+..-..=+|.||..|-+..+++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 4456799999999876544433335799999999998865
No 104
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=85.23 E-value=0.48 Score=30.03 Aligned_cols=48 Identities=23% Similarity=0.422 Sum_probs=30.8
Q ss_pred CCcccccCccccCCCceEEcCCCCCcccHHhHHHH---------HcCCCCCcccccccc
Q 040080 77 PIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAW---------LLTNPNCPICRSTAN 126 (192)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w---------l~~~~~CP~Cr~~~~ 126 (192)
...| ||...+..+..+.-- .|...||..|+.-- ....-.||.|+..-.
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd-~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCD-RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECS-SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCEE-ECCCccCCCCEEEeC-CCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 3456 898876543333333 49999999998421 123566999987543
No 105
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=84.30 E-value=0.29 Score=30.07 Aligned_cols=52 Identities=15% Similarity=0.454 Sum_probs=34.2
Q ss_pred CCCCcccccCccccC-CCceEEcCCCCCcccHHhHHHHHc-------CCCCCcccccccc
Q 040080 75 SSPIECAVCLDKFNK-GDKCRLLPICNHSFHAQCVDAWLL-------TNPNCPICRSTAN 126 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~-~~~~~~~~~C~H~fh~~Ci~~wl~-------~~~~CP~Cr~~~~ 126 (192)
.++..|.||...... ...+..-..|.-.||..|+.+=+. ..-.||.|+....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 345679999976432 234444455999999999986331 2335999976543
No 106
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.93 E-value=0.15 Score=33.89 Aligned_cols=50 Identities=22% Similarity=0.376 Sum_probs=32.7
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcC----CCCCccccccc
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLT----NPNCPICRSTA 125 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~~ 125 (192)
.+...|.||...-... .+..-..|...||..|+.+=+.. .-.||.|+..-
T Consensus 14 ~~~~~C~vC~~~~~~~-~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 67 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDD-KLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAE 67 (92)
T ss_dssp CCCCCCSSSCCSGGGG-GCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHHH
T ss_pred cCCCCCccCCCcCCCC-CEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCcc
Confidence 3455799999764322 33444449999999999753433 22499997643
No 107
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=82.90 E-value=0.68 Score=34.03 Aligned_cols=48 Identities=23% Similarity=0.534 Sum_probs=31.6
Q ss_pred CCCcccccCccccCCCceEEcCCCCCcccHHhHHHH--H---cCCCCCcccccc
Q 040080 76 SPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAW--L---LTNPNCPICRST 124 (192)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w--l---~~~~~CP~Cr~~ 124 (192)
+...| +|......+...+.-..|...||..|+.-- - ...-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 34568 999876544434444459999999999421 1 123459999874
No 108
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=82.42 E-value=0.74 Score=31.23 Aligned_cols=51 Identities=24% Similarity=0.498 Sum_probs=33.6
Q ss_pred CCcccccCccccCCCceEEcC-CCCCcccHHhHHHH------H--c--CCCCCccccccccc
Q 040080 77 PIECAVCLDKFNKGDKCRLLP-ICNHSFHAQCVDAW------L--L--TNPNCPICRSTANS 127 (192)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~-~C~H~fh~~Ci~~w------l--~--~~~~CP~Cr~~~~~ 127 (192)
...|.||...+......+.-. .|...||..|+.-= + . ..-.||.|+.....
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~ 64 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEG 64 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCC
Confidence 346999999986554444432 48999999998411 1 0 23459999886543
No 109
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=82.05 E-value=0.28 Score=36.97 Aligned_cols=45 Identities=27% Similarity=0.558 Sum_probs=30.4
Q ss_pred CCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcC----CCCCccccccc
Q 040080 77 PIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLT----NPNCPICRSTA 125 (192)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~~ 125 (192)
+..|.+|... ++.+..-. |...||..|+.+=+.. .-.||.|+...
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~-C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQ-CEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTT-TCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC---CceeECCC-CCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 3569999865 43333333 8899999999764433 22499998763
No 110
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=81.90 E-value=0.82 Score=30.26 Aligned_cols=46 Identities=30% Similarity=0.591 Sum_probs=28.0
Q ss_pred CCCcccccCccccCCCceEEcCC--CC-CcccHHhHHHHHcC----CCCCcccccccc
Q 040080 76 SPIECAVCLDKFNKGDKCRLLPI--CN-HSFHAQCVDAWLLT----NPNCPICRSTAN 126 (192)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~~--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~~~~ 126 (192)
+...| ||..... +. .+.-.. |. ..||..|+. +.. +-.||.|+....
T Consensus 35 e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 34557 9988643 32 222233 55 689999997 332 234999987543
No 111
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=81.83 E-value=2.2 Score=29.00 Aligned_cols=46 Identities=22% Similarity=0.391 Sum_probs=28.0
Q ss_pred CCcccccCccc-----cCCCceEEcCCCCCcccHHhHHH------HHc-CCCCCcccc
Q 040080 77 PIECAVCLDKF-----NKGDKCRLLPICNHSFHAQCVDA------WLL-TNPNCPICR 122 (192)
Q Consensus 77 ~~~C~IC~~~~-----~~~~~~~~~~~C~H~fh~~Ci~~------wl~-~~~~CP~Cr 122 (192)
...|.+|+..- ..++.+..-..|+..||..|+.. .+. ..-.||.|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 45699998752 11223444444999999999952 222 234477775
No 112
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=81.65 E-value=0.65 Score=25.05 Aligned_cols=15 Identities=27% Similarity=0.166 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 040080 4 AIIISVIFLFLGIGA 18 (192)
Q Consensus 4 ~iil~~~~~~~~i~~ 18 (192)
+|+.+++.+++.+++
T Consensus 9 sIaagVvglll~vii 23 (35)
T 1iij_A 9 FIIATVVGVLLFLIL 23 (35)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred EeHHHHHHHHHHHHH
Confidence 455555553333333
No 113
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=81.54 E-value=1.3 Score=27.84 Aligned_cols=46 Identities=30% Similarity=0.580 Sum_probs=28.3
Q ss_pred CCCcccccCccccCCCceEEcCC--CC-CcccHHhHHHHHcC----CCCCcccccccc
Q 040080 76 SPIECAVCLDKFNKGDKCRLLPI--CN-HSFHAQCVDAWLLT----NPNCPICRSTAN 126 (192)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~~--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~~~~ 126 (192)
+...| ||..... + ..+.-.. |. ..||..|+. +.. +-.||.|+..-.
T Consensus 15 ~~~~C-~C~~~~~-g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 15 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp SCCCS-TTCCCSC-S-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCEE-ECCCCCC-C-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 34557 8987642 3 3333333 55 689999997 333 234999977543
No 114
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=81.29 E-value=0.45 Score=29.67 Aligned_cols=47 Identities=21% Similarity=0.472 Sum_probs=29.7
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHc---CCCCCccccc
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLL---TNPNCPICRS 123 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~---~~~~CP~Cr~ 123 (192)
.+...| ||..... +...+.-..|...||..|+.---. ..-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 445568 9988765 333343344999999999864211 1335998864
No 115
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=81.16 E-value=0.55 Score=30.00 Aligned_cols=49 Identities=27% Similarity=0.448 Sum_probs=30.1
Q ss_pred CCCcccccCccccCCCceEEc-CCCCCcccHHhHHHHH---------cCCCCCccccccc
Q 040080 76 SPIECAVCLDKFNKGDKCRLL-PICNHSFHAQCVDAWL---------LTNPNCPICRSTA 125 (192)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~-~~C~H~fh~~Ci~~wl---------~~~~~CP~Cr~~~ 125 (192)
....| ||-.....+.-+.-- +.|...||..|+.--- ..+-.||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 34557 788874444333333 1499999999985311 1234599998754
No 116
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=81.04 E-value=0.34 Score=30.44 Aligned_cols=49 Identities=18% Similarity=0.346 Sum_probs=31.5
Q ss_pred CCCcccccCccccCCCceEEcCCCCCcccHHhHHHHH----cCCCCCccccccc
Q 040080 76 SPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWL----LTNPNCPICRSTA 125 (192)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl----~~~~~CP~Cr~~~ 125 (192)
....| ||......+...+.-..|...||..|+.--- ...-.||.|+..-
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 34558 7988765554344444599999999986421 1234599998644
No 117
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=80.46 E-value=1.8 Score=29.52 Aligned_cols=51 Identities=24% Similarity=0.427 Sum_probs=33.0
Q ss_pred CCCCCCCcccccCccccCCCceEEcC--CCCCcccHHhHHHHHcCC----CCCcccccccccC
Q 040080 72 SKGSSPIECAVCLDKFNKGDKCRLLP--ICNHSFHAQCVDAWLLTN----PNCPICRSTANSR 128 (192)
Q Consensus 72 ~~~~~~~~C~IC~~~~~~~~~~~~~~--~C~H~fh~~Ci~~wl~~~----~~CP~Cr~~~~~~ 128 (192)
.+...+..|.+|.+. + .+..-. .|...||..|+. |... -.||.|+.....+
T Consensus 10 ~~~~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 10 PKQMHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp CCCSSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CcCCCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 334567779999842 3 333332 488999999997 4432 2499887766544
No 118
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=79.98 E-value=2 Score=26.55 Aligned_cols=11 Identities=18% Similarity=0.153 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 040080 5 IIISVIFLFLG 15 (192)
Q Consensus 5 iil~~~~~~~~ 15 (192)
|+++.++.++.
T Consensus 12 ivlGg~~~lll 22 (70)
T 2klu_A 12 IVLGGVAGLLL 22 (70)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHhHHHHHHH
Confidence 44444444433
No 119
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=79.08 E-value=2.3 Score=29.98 Aligned_cols=46 Identities=22% Similarity=0.499 Sum_probs=31.2
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHH------c-----CCCCCcccccc
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWL------L-----TNPNCPICRST 124 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl------~-----~~~~CP~Cr~~ 124 (192)
..+..|.||-+- + .+..-..|-..||..||.+-+ . ..-.|++|+.+
T Consensus 55 g~~~~C~vC~dG---G-~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 55 GMDEQCRWCAEG---G-NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SCBSSCTTTCCC---S-EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCcCeecCCC---C-eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 455679999974 3 333434599999999999742 1 12459999653
No 120
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=78.66 E-value=0.68 Score=30.35 Aligned_cols=51 Identities=18% Similarity=0.406 Sum_probs=34.9
Q ss_pred CCcccccCccccC-CCceEEcCCCCCcccHHhHHHHHc--------CCCCCccccccccc
Q 040080 77 PIECAVCLDKFNK-GDKCRLLPICNHSFHAQCVDAWLL--------TNPNCPICRSTANS 127 (192)
Q Consensus 77 ~~~C~IC~~~~~~-~~~~~~~~~C~H~fh~~Ci~~wl~--------~~~~CP~Cr~~~~~ 127 (192)
...|.+|...-.. ...+..-..|...||..|+.+=+. ..-.|+.|+.....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 4579999976432 234555455999999999986543 12359999876643
No 121
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=78.48 E-value=3.2 Score=26.56 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 040080 3 MAIIISVIFLFLGIGALIF 21 (192)
Q Consensus 3 ~~iil~~~~~~~~i~~l~~ 21 (192)
++|+++++..++.+.++++
T Consensus 11 ~~Iv~gvi~gilliGllll 29 (79)
T 2knc_B 11 LVVLLSVMGAILLIGLAAL 29 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 3455555444443333333
No 122
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=77.07 E-value=0.33 Score=31.15 Aligned_cols=44 Identities=32% Similarity=0.702 Sum_probs=27.2
Q ss_pred cccccCccccCCCceEEcCCCCCcccHHhHHHHHcC----C-CCCccccc
Q 040080 79 ECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLT----N-PNCPICRS 123 (192)
Q Consensus 79 ~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~-~~CP~Cr~ 123 (192)
.|.+|...-.. ..+..-..|...||..|+.+-|.. . -.||.|+.
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 36666654322 234444449999999999865543 1 35999975
No 123
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=76.94 E-value=2.1 Score=35.54 Aligned_cols=49 Identities=18% Similarity=0.468 Sum_probs=31.8
Q ss_pred CcccccCccccCCCceEEcCCCCCc--ccHHhHHHHHcC--CCCCcccccccccCC
Q 040080 78 IECAVCLDKFNKGDKCRLLPICNHS--FHAQCVDAWLLT--NPNCPICRSTANSRR 129 (192)
Q Consensus 78 ~~C~IC~~~~~~~~~~~~~~~C~H~--fh~~Ci~~wl~~--~~~CP~Cr~~~~~~~ 129 (192)
..||+-+..+. ..++-.. |.|. |-..-+.....+ .-.||+|.+.+....
T Consensus 250 L~CPlS~~ri~--~PvRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~d 302 (371)
T 3i2d_A 250 LQCPISYTRMK--YPSKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALEN 302 (371)
T ss_dssp SBCTTTSSBCS--SEEEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGG
T ss_pred ecCCCcccccc--ccCcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcccCHHH
Confidence 45998888774 4566677 9998 544333333222 345999999886654
No 124
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=76.51 E-value=2 Score=35.57 Aligned_cols=49 Identities=22% Similarity=0.434 Sum_probs=32.1
Q ss_pred CcccccCccccCCCceEEcCCCCCc--ccHHhHHHHHcC--CCCCcccccccccCC
Q 040080 78 IECAVCLDKFNKGDKCRLLPICNHS--FHAQCVDAWLLT--NPNCPICRSTANSRR 129 (192)
Q Consensus 78 ~~C~IC~~~~~~~~~~~~~~~C~H~--fh~~Ci~~wl~~--~~~CP~Cr~~~~~~~ 129 (192)
..||+-+..+. ..++... |.|. |-..-+.....+ .-.||+|.+.+....
T Consensus 216 L~CPlS~~ri~--~P~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~d 268 (360)
T 4fo9_A 216 LMCPLGKMRLT--IPCRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYES 268 (360)
T ss_dssp SBCTTTCSBCS--SEEEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGG
T ss_pred eeCCCccceec--cCCcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHH
Confidence 35998887774 4566666 9998 554444443333 345999999886544
No 125
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.05 E-value=0.56 Score=30.01 Aligned_cols=44 Identities=30% Similarity=0.589 Sum_probs=28.5
Q ss_pred cccccCccccCCCceEEcCCCCCcccHHhHHHHHcC-----CCCCccccc
Q 040080 79 ECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLT-----NPNCPICRS 123 (192)
Q Consensus 79 ~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-----~~~CP~Cr~ 123 (192)
.|.||...-..+ .+..-..|...||..|+.+=|.. .-.||.|..
T Consensus 28 ~C~vC~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPN-MQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCST-TEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCC-CEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 688888643233 34444449999999999854433 124998865
No 126
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=75.28 E-value=0.46 Score=33.17 Aligned_cols=49 Identities=16% Similarity=0.334 Sum_probs=31.3
Q ss_pred CCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCccccccc
Q 040080 77 PIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTA 125 (192)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~ 125 (192)
...|..|...|..-..--.-..||.+||..|..........|-.|...+
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 4579999999864322122234999999999776655566788886644
No 127
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=73.47 E-value=3 Score=26.85 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=24.7
Q ss_pred CCCcccccCccccCCCceEEcCCCCCcccHHhHHHH
Q 040080 76 SPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAW 111 (192)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w 111 (192)
+...|.+|...|..-..--.-..||++||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 455799999998654221222349999999997653
No 128
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=72.76 E-value=1.3 Score=26.63 Aligned_cols=42 Identities=36% Similarity=0.630 Sum_probs=26.3
Q ss_pred CCcccccCccccCCCceEEcCC--CC-CcccHHhHHHHHcC----CCCCccccc
Q 040080 77 PIECAVCLDKFNKGDKCRLLPI--CN-HSFHAQCVDAWLLT----NPNCPICRS 123 (192)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~~--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~ 123 (192)
..-| ||..... + ..+.-.. |. ..||..|+. +.. +-.||.|+.
T Consensus 9 ~~yC-~C~~~~~-g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVSY-G-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCCC-C-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 4456 8987642 3 3344344 55 689999997 333 234999965
No 129
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=72.27 E-value=2.3 Score=29.71 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=23.3
Q ss_pred CCcccccCccccCCCceEEcCCCCCcccHHhHHH
Q 040080 77 PIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDA 110 (192)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~ 110 (192)
...|.+|...|.....--.-..||++||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 4569999999864321112234999999999654
No 130
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=72.19 E-value=0.97 Score=27.39 Aligned_cols=43 Identities=19% Similarity=0.420 Sum_probs=28.7
Q ss_pred CcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCccc
Q 040080 78 IECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPIC 121 (192)
Q Consensus 78 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~C 121 (192)
..|--|...+... ....-+.|++.||.+|-.---.+=..||-|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4599999888532 223356699999999965422333459988
No 131
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=72.17 E-value=0.69 Score=28.96 Aligned_cols=44 Identities=32% Similarity=0.684 Sum_probs=27.1
Q ss_pred cccccCccccCCCceEEcCCCCCcccHHhHHHHHcC-----CCCCccccc
Q 040080 79 ECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLT-----NPNCPICRS 123 (192)
Q Consensus 79 ~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-----~~~CP~Cr~ 123 (192)
.|.||...-. +..+..-..|...||..|+.+=|.. .-.||.|+.
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 4567765322 2234444459999999999854433 224998875
No 132
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=72.14 E-value=0.96 Score=35.04 Aligned_cols=44 Identities=27% Similarity=0.666 Sum_probs=25.2
Q ss_pred cccccCccccCCCceEEcCCCCCcccHHhHHHHHcC--C---CCCccccc
Q 040080 79 ECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLT--N---PNCPICRS 123 (192)
Q Consensus 79 ~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~--~---~~CP~Cr~ 123 (192)
.|.+|...-..+.. ..-..|...||..|+.+=+.. . -.||.|+.
T Consensus 176 ~C~vC~~~~~~~~l-L~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQ-LMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CC-EECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCe-EEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 57888764322333 333349999999999864433 1 24999975
No 133
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=72.12 E-value=2.9 Score=26.79 Aligned_cols=36 Identities=19% Similarity=0.439 Sum_probs=24.3
Q ss_pred CCCcccccCccccCCCceEEcCCCCCcccHHhHHHH
Q 040080 76 SPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAW 111 (192)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w 111 (192)
+...|.+|...|.....--.-..||.+||..|....
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 345799999998643211122349999999997653
No 134
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=71.95 E-value=4 Score=26.56 Aligned_cols=53 Identities=21% Similarity=0.325 Sum_probs=33.3
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHc-------CCCCCccccccccc
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLL-------TNPNCPICRSTANS 127 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~-------~~~~CP~Cr~~~~~ 127 (192)
.+...|.+|...|..-..----..||++||..|....+. ....|-.|...+..
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~ 66 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTR 66 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHH
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHh
Confidence 345579999999865422122234999999999765321 12347777665544
No 135
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=71.62 E-value=0.55 Score=29.13 Aligned_cols=45 Identities=20% Similarity=0.369 Sum_probs=26.3
Q ss_pred CcccccCccccCCCceEEc-CCCCCcccHHhHHHHH---c-----CCCCCccccc
Q 040080 78 IECAVCLDKFNKGDKCRLL-PICNHSFHAQCVDAWL---L-----TNPNCPICRS 123 (192)
Q Consensus 78 ~~C~IC~~~~~~~~~~~~~-~~C~H~fh~~Ci~~wl---~-----~~~~CP~Cr~ 123 (192)
..| ||-.....+..+.-- +.|...||..|+.--- . .+-.||.||.
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 346 787665545333322 1388899999973200 0 1235999975
No 136
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=71.20 E-value=1.4 Score=26.54 Aligned_cols=42 Identities=33% Similarity=0.622 Sum_probs=25.8
Q ss_pred CCcccccCccccCCCceEEcCC--CC-CcccHHhHHHHHcC----CCCCccccc
Q 040080 77 PIECAVCLDKFNKGDKCRLLPI--CN-HSFHAQCVDAWLLT----NPNCPICRS 123 (192)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~~--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~ 123 (192)
..-| ||..... + ..+.-.. |. ..||..|+. +.. .-.||.|+.
T Consensus 10 ~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 4456 8987642 3 3333334 44 689999997 433 234999965
No 137
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=71.05 E-value=0.5 Score=32.51 Aligned_cols=48 Identities=17% Similarity=0.470 Sum_probs=30.9
Q ss_pred cccccCccccCCCceEEcCCCCCcccHHhHHHHHcC----CCCCccccccccc
Q 040080 79 ECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLT----NPNCPICRSTANS 127 (192)
Q Consensus 79 ~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~~~~ 127 (192)
.|.||...-..+ .+..-..|...||..|+.+=+.. .-.||.|+..+..
T Consensus 60 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~ 111 (114)
T 2kwj_A 60 SCILCGTSENDD-QLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKE 111 (114)
T ss_dssp CCTTTTCCTTTT-TEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHH
T ss_pred ccCcccccCCCC-ceEEcCCCCccccccccCCCccCCCCCCeECccccchhhc
Confidence 477887653333 34444459999999999864433 2249999776543
No 138
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=70.31 E-value=2.9 Score=27.35 Aligned_cols=51 Identities=20% Similarity=0.393 Sum_probs=32.3
Q ss_pred CCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcC------CCCCccccccccc
Q 040080 77 PIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLT------NPNCPICRSTANS 127 (192)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~------~~~CP~Cr~~~~~ 127 (192)
...|.+|...|..-..--.-..||++||..|...+... ...|-.|...+..
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~~ 76 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETISK 76 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHHH
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHHH
Confidence 45699999998643221223349999999998764321 2347777665543
No 139
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=70.24 E-value=3.3 Score=25.88 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=22.4
Q ss_pred CcccccCccccCCCceEEcCCCCCcccHHhHHH
Q 040080 78 IECAVCLDKFNKGDKCRLLPICNHSFHAQCVDA 110 (192)
Q Consensus 78 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~ 110 (192)
..|.+|...|..-..----..||.+||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 479999999864321112234999999999643
No 140
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.39 E-value=3.7 Score=26.37 Aligned_cols=34 Identities=26% Similarity=0.482 Sum_probs=22.6
Q ss_pred CCCcccccCccccCCCceEEcCCCCCcccHHhHH
Q 040080 76 SPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVD 109 (192)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~ 109 (192)
+...|.+|...|..-..----..||.+||..|..
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 3457999999985432111123499999999954
No 141
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=69.00 E-value=12 Score=20.87 Aligned_cols=11 Identities=27% Similarity=0.470 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 040080 4 AIIISVIFLFL 14 (192)
Q Consensus 4 ~iil~~~~~~~ 14 (192)
+|+++++..++
T Consensus 11 ~Iv~gvi~~iv 21 (43)
T 2k9j_B 11 VVLLSVMGAIL 21 (43)
T ss_dssp HHHHHHHHHHH
T ss_pred ehHHHHHHHHH
Confidence 44444444333
No 142
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=68.45 E-value=0.99 Score=30.66 Aligned_cols=45 Identities=20% Similarity=0.516 Sum_probs=28.7
Q ss_pred cccccCccccCCCceEEcCCCCCcccHHhHHHHHcC----CCCCcccccc
Q 040080 79 ECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLT----NPNCPICRST 124 (192)
Q Consensus 79 ~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~----~~~CP~Cr~~ 124 (192)
.|.+|...-.. ..+..-..|...||..|+.+=+.. .-.||.|+.-
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 46677665322 234444559999999999864443 2349988653
No 143
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=67.84 E-value=9.4 Score=18.77 Aligned_cols=19 Identities=5% Similarity=0.438 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 040080 7 ISVIFLFLGIGALIFIHVC 25 (192)
Q Consensus 7 l~~~~~~~~i~~l~~~~~~ 25 (192)
..+++++++++...+++.+
T Consensus 6 A~~lLIviav~aaVllylW 24 (26)
T 3j1r_A 6 ATLLLILIAVAAAVLLYTW 24 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444555555444433
No 144
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=67.06 E-value=4.5 Score=27.54 Aligned_cols=45 Identities=24% Similarity=0.429 Sum_probs=27.2
Q ss_pred CcccccCcccc------CCCceEEcCCCCCcccHHhHHHHH------c-CCCCCcccc
Q 040080 78 IECAVCLDKFN------KGDKCRLLPICNHSFHAQCVDAWL------L-TNPNCPICR 122 (192)
Q Consensus 78 ~~C~IC~~~~~------~~~~~~~~~~C~H~fh~~Ci~~wl------~-~~~~CP~Cr 122 (192)
..|.+|+..-. .+..++.-..|+..||..|+..+. . ..-.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 45899987531 122333334499999999997542 1 133477773
No 145
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=66.48 E-value=3 Score=31.78 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=23.6
Q ss_pred CCcccccCccccCCCceEEcCCCCCcccHHhHHH
Q 040080 77 PIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDA 110 (192)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~ 110 (192)
...|.+|...|..-..--.-..||++||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 4689999999864321112234999999999654
No 146
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=66.38 E-value=2.5 Score=26.56 Aligned_cols=48 Identities=23% Similarity=0.376 Sum_probs=30.4
Q ss_pred ccccCccccCCCceEEcCCCCCcccHHhHHHHHc-----CCCCCccccccccc
Q 040080 80 CAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLL-----TNPNCPICRSTANS 127 (192)
Q Consensus 80 C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~~~~ 127 (192)
--||...+..+...+.-..|.-.||..|+.---. ..-.||.|+....+
T Consensus 12 yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~~~ 64 (75)
T 3kqi_A 12 YCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGK 64 (75)
T ss_dssp ETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHHCC
T ss_pred EEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccCCC
Confidence 3488877654434444444999999999953211 23459999876443
No 147
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=64.02 E-value=2.6 Score=28.21 Aligned_cols=12 Identities=25% Similarity=0.866 Sum_probs=10.8
Q ss_pred ccHHhHHHHHcC
Q 040080 103 FHAQCVDAWLLT 114 (192)
Q Consensus 103 fh~~Ci~~wl~~ 114 (192)
||..|+..|+..
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999953
No 148
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=63.95 E-value=2.6 Score=28.15 Aligned_cols=11 Identities=36% Similarity=1.192 Sum_probs=10.4
Q ss_pred ccHHhHHHHHc
Q 040080 103 FHAQCVDAWLL 113 (192)
Q Consensus 103 fh~~Ci~~wl~ 113 (192)
||..|+..|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999996
No 149
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=63.89 E-value=11 Score=24.09 Aligned_cols=18 Identities=6% Similarity=0.200 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 040080 3 MAIIISVIFLFLGIGALI 20 (192)
Q Consensus 3 ~~iil~~~~~~~~i~~l~ 20 (192)
++++.+++++.+.++++.
T Consensus 15 ~gvi~gilliGllllliw 32 (79)
T 2knc_B 15 LSVMGAILLIGLAALLIW 32 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555444444443333
No 150
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=63.75 E-value=1.7 Score=26.41 Aligned_cols=42 Identities=33% Similarity=0.622 Sum_probs=25.9
Q ss_pred CCcccccCccccCCCceEEcCC--CC-CcccHHhHHHHHcC----CCCCccccc
Q 040080 77 PIECAVCLDKFNKGDKCRLLPI--CN-HSFHAQCVDAWLLT----NPNCPICRS 123 (192)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~~--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~ 123 (192)
..-| ||.... .+ ..+.-.. |. ..||..|+. +.. +-.||.|+.
T Consensus 11 ~~yC-~C~~~~-~g-~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVS-YG-EMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCC-CC-CeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 4456 898863 23 3333334 44 789999997 222 234999975
No 151
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=63.68 E-value=3.6 Score=31.61 Aligned_cols=50 Identities=20% Similarity=0.406 Sum_probs=31.4
Q ss_pred CCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcC--------CCCCcccccccc
Q 040080 77 PIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLT--------NPNCPICRSTAN 126 (192)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~--------~~~CP~Cr~~~~ 126 (192)
...|.+|...|..-..--.-..||++||..|...+... ...|-.|...+.
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~ 221 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLN 221 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHC
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhh
Confidence 45799999998644221223349999999997654311 234777765543
No 152
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=63.44 E-value=1.4 Score=25.65 Aligned_cols=41 Identities=22% Similarity=0.437 Sum_probs=24.7
Q ss_pred ccCccccCCCceEEcCCCCCcccHHhHHHHHc---CCCCCccccc
Q 040080 82 VCLDKFNKGDKCRLLPICNHSFHAQCVDAWLL---TNPNCPICRS 123 (192)
Q Consensus 82 IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~---~~~~CP~Cr~ 123 (192)
||..... +...+.-..|...||..|+.---. ..-.||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6766544 323333334999999999863211 2345998875
No 153
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=59.70 E-value=1.8 Score=23.12 Aligned_cols=14 Identities=14% Similarity=0.593 Sum_probs=9.0
Q ss_pred CCcccccCccccCC
Q 040080 77 PIECAVCLDKFNKG 90 (192)
Q Consensus 77 ~~~C~IC~~~~~~~ 90 (192)
.+.||||+..+...
T Consensus 5 GFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 5 GFICPQCMKSLGSA 18 (34)
T ss_dssp EEECTTTCCEESSH
T ss_pred ccCCcHHHHHcCCH
Confidence 46677777766443
No 154
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=59.17 E-value=5.5 Score=28.12 Aligned_cols=49 Identities=14% Similarity=0.290 Sum_probs=31.1
Q ss_pred CCCCcccccCcccc--CCCceEEcCCCCCcccHHhHHHHHcC-C---CCCcccccc
Q 040080 75 SSPIECAVCLDKFN--KGDKCRLLPICNHSFHAQCVDAWLLT-N---PNCPICRST 124 (192)
Q Consensus 75 ~~~~~C~IC~~~~~--~~~~~~~~~~C~H~fh~~Ci~~wl~~-~---~~CP~Cr~~ 124 (192)
.+...|.+|...|. .+....... |.|.+|..|-..-... + -.|-+|+..
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~-C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCED-CKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTT-TCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCC-CCcccccccCCccCCCCCccceechhhHHH
Confidence 45678999999983 223333344 9999999996531111 1 128888764
No 155
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=58.20 E-value=20 Score=19.25 Aligned_cols=27 Identities=0% Similarity=0.076 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040080 4 AIIISVIFLFLGIGALIFIHVCIVART 30 (192)
Q Consensus 4 ~iil~~~~~~~~i~~l~~~~~~~~~~~ 30 (192)
.+..++++.++.+.++-++...+.+++
T Consensus 4 ~lL~GIVlGlipvtlaGLfv~Ay~Qyr 30 (37)
T 1q90_G 4 PLLCGIVLGLVPVTIAGLFVTAYLQYL 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhHHHhhHHHHHHHHHHHHHHHHh
Confidence 334444444444444433433444443
No 156
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=57.63 E-value=2.2 Score=28.90 Aligned_cols=24 Identities=29% Similarity=0.592 Sum_probs=15.9
Q ss_pred CCCcccHHhHHHHHcCCCCCccccccccc
Q 040080 99 CNHSFHAQCVDAWLLTNPNCPICRSTANS 127 (192)
Q Consensus 99 C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 127 (192)
||+.|. .-+.....||.|+.....
T Consensus 73 CG~~F~-----~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 73 CGFVFK-----AEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp TCCBCC-----CCSSCCSSCSSSCCCCBC
T ss_pred CcCeec-----ccCCCCCCCcCCCCCccC
Confidence 999991 112335679999986543
No 157
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=57.47 E-value=3.7 Score=26.97 Aligned_cols=44 Identities=23% Similarity=0.405 Sum_probs=27.0
Q ss_pred CCCCcccccCccccCCCceEEcCCCC---CcccHHhHHHHHcC----CCCCcc-ccc
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICN---HSFHAQCVDAWLLT----NPNCPI-CRS 123 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~---H~fh~~Ci~~wl~~----~~~CP~-Cr~ 123 (192)
.+..-| ||..... +. .+.-..|. ..||..|+. |.. .-.||. |+.
T Consensus 24 ~~~~yC-iC~~~~~-g~-MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-GP-MVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCS-SS-EECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCC-CC-EEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 445557 8987532 33 33333455 689999986 222 335999 985
No 158
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.43 E-value=8.5 Score=23.22 Aligned_cols=41 Identities=22% Similarity=0.477 Sum_probs=28.1
Q ss_pred CcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccC
Q 040080 78 IECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSR 128 (192)
Q Consensus 78 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 128 (192)
..|+-|-..+...+.+. .. -+..||..| -+|-.|..++...
T Consensus 6 ~~C~~C~~~I~~~~~~~-~a-~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKL-EY-GGQTWHEHC--------FLCSGCEQPLGSR 46 (72)
T ss_dssp CBCSSSCCBCCSSSCEE-CS-TTCCEETTT--------CBCTTTCCBTTTS
T ss_pred CCCccCCCccccCccEE-EE-CccccCccc--------CeECCCCCcCCCC
Confidence 46999998887543333 22 577888877 3588888877654
No 159
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=56.96 E-value=2.3 Score=35.61 Aligned_cols=50 Identities=14% Similarity=0.208 Sum_probs=0.0
Q ss_pred CCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcC-------CCCCccccccc
Q 040080 76 SPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLT-------NPNCPICRSTA 125 (192)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-------~~~CP~Cr~~~ 125 (192)
....|.+|...|.....--.-..||++||..|...++.. ...|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 345799999988533211112239999999999766421 23477775544
No 160
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=55.99 E-value=1.1 Score=27.08 Aligned_cols=48 Identities=29% Similarity=0.610 Sum_probs=26.1
Q ss_pred CCCCcccccCc-cccCCCceEEcCCCCCcccHHhHHHHHcC-CCC---Cccccc
Q 040080 75 SSPIECAVCLD-KFNKGDKCRLLPICNHSFHAQCVDAWLLT-NPN---CPICRS 123 (192)
Q Consensus 75 ~~~~~C~IC~~-~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~-~~~---CP~Cr~ 123 (192)
.+...|.||+. +|.++..-.-.. |.-.||..|--.|-.+ +++ |-+||+
T Consensus 7 ~d~~~C~iC~KTKFADG~Gh~C~y-Ck~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 7 GDAPTCGICHKTKFADGCGHNCSY-CQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SCCCCCSSSSCSCCCSSCCEEBTT-TCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred CCcchhhhhccceeccCCCccccc-cCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 34567999997 465553333333 5555666665554322 221 666654
No 161
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.42 E-value=13 Score=22.71 Aligned_cols=44 Identities=20% Similarity=0.389 Sum_probs=30.0
Q ss_pred CCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccCC
Q 040080 76 SPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSRR 129 (192)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 129 (192)
....|+-|-..+...+.+... -+..||..| -+|-.|+.++....
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~~ 53 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPEGL 53 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCGGGC
T ss_pred CCCCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCCCCC
Confidence 345799999988754443322 567788877 35888888876543
No 162
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=53.72 E-value=23 Score=18.75 Aligned_cols=6 Identities=33% Similarity=0.479 Sum_probs=2.2
Q ss_pred HHHHHH
Q 040080 6 IISVIF 11 (192)
Q Consensus 6 il~~~~ 11 (192)
.+.++.
T Consensus 9 alt~i~ 14 (40)
T 2l9u_A 9 ALTVIA 14 (40)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 163
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.69 E-value=11 Score=23.07 Aligned_cols=42 Identities=19% Similarity=0.431 Sum_probs=30.4
Q ss_pred CCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccCC
Q 040080 77 PIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSRR 129 (192)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 129 (192)
...|+.|-..+..++.+.. -+..||..| -+|..|+.+|....
T Consensus 9 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~~~ 50 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS---LGKDWHKFC--------LKCERCSKTLTPGG 50 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE---TTEEEETTT--------CBCSSSCCBCCTTS
T ss_pred CCCCcCCCCEeECCeEEEE---CCeEeeCCC--------CCCCCCCCccCCCc
Confidence 4569999999876655432 567899887 35889988886543
No 164
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=53.56 E-value=7.9 Score=23.19 Aligned_cols=43 Identities=21% Similarity=0.420 Sum_probs=30.8
Q ss_pred CCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccCC
Q 040080 77 PIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSRR 129 (192)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 129 (192)
...|+-|-..+...+.+... -+..||..|. .|-.|..++....
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~~~ 53 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEGL 53 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGGGC
T ss_pred CccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCCCC
Confidence 45699999998766554332 5677998884 5888988886543
No 165
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.56 E-value=9.6 Score=22.96 Aligned_cols=41 Identities=20% Similarity=0.458 Sum_probs=27.5
Q ss_pred CcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccC
Q 040080 78 IECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSR 128 (192)
Q Consensus 78 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 128 (192)
..|+.|-..+...+.+... -+..||..| -+|-.|+.++...
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETC--------FICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTT--------TCCSSSCCCCCSS
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccC--------CcccccCCccCCC
Confidence 4588999888765433322 566788777 3588888877554
No 166
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.75 E-value=14 Score=22.28 Aligned_cols=43 Identities=26% Similarity=0.531 Sum_probs=28.8
Q ss_pred CCcccccCccccC--CCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccCC
Q 040080 77 PIECAVCLDKFNK--GDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSRR 129 (192)
Q Consensus 77 ~~~C~IC~~~~~~--~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 129 (192)
...|+-|-..+.. ...+... -+..||..| -+|-.|+.+|....
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a--~~~~wH~~C--------F~C~~C~~~L~~~~ 49 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISF--EERQWHNDC--------FNCKKCSLSLVGRG 49 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEEC--SSCEECTTT--------CBCSSSCCBCTTSC
T ss_pred CCCCcCCCccccCCCCcceEEE--CCcccCccc--------CEeccCCCcCCCCc
Confidence 3469999998875 2233322 577899888 35888988886443
No 167
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.44 E-value=14 Score=22.19 Aligned_cols=40 Identities=20% Similarity=0.464 Sum_probs=24.8
Q ss_pred CcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCccccccccc
Q 040080 78 IECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANS 127 (192)
Q Consensus 78 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 127 (192)
..|+.|-..+...+.+... -+..||..| -.|-.|+.++..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVVA--LDRVFHVGC--------FVCSTCRAQLRG 45 (72)
T ss_dssp CCCSSSCSCCCSSSCCEEC--SSSEECTTT--------CBCSSSCCBCTT
T ss_pred CCCccCCCccCCCceEEEE--CCCeEcccC--------CcccccCCcCCc
Confidence 4588888777653322222 466788777 347788777743
No 168
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=51.40 E-value=12 Score=22.97 Aligned_cols=32 Identities=22% Similarity=0.460 Sum_probs=24.5
Q ss_pred CCCCcccccCccccCCCceEEcCCC-CCcccHHhHHHH
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPIC-NHSFHAQCVDAW 111 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C-~H~fh~~Ci~~w 111 (192)
.+..-|.||.++ ..++.+. | +-+||..|..+-
T Consensus 6 ee~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSC----CCEEETT-TTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCC----CeEEecC-CCCceehHHHHHHH
Confidence 345569999987 3467777 8 789999998774
No 169
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.07 E-value=17 Score=22.75 Aligned_cols=44 Identities=23% Similarity=0.419 Sum_probs=31.1
Q ss_pred CCCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccCC
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSRR 129 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 129 (192)
.....|+.|-..+...+.+. - -+..||..| -+|-.|+..|....
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~--a-~~~~wH~~C--------F~C~~C~~~L~~~~ 56 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLC--V-NGHFFHRSC--------FRCHTCEATLWPGG 56 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCC--B-TTBCCBTTT--------CBCSSSCCBCCTTS
T ss_pred CCCCCCcccCCCcccceEEE--E-CCCeeCCCc--------CEEcCCCCCcCCCc
Confidence 34567999999886554443 2 567899888 35888988886554
No 170
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.03 E-value=14 Score=22.94 Aligned_cols=41 Identities=20% Similarity=0.511 Sum_probs=29.1
Q ss_pred CcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccC
Q 040080 78 IECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSR 128 (192)
Q Consensus 78 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 128 (192)
..|+.|-..+..++.+... -+..||..| -+|-.|+.++...
T Consensus 16 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEY--KGTVWHKDC--------FTCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSSCEEEC--SSCEEETTT--------CCCSSSCCCCTTS
T ss_pred CcCccCCcccccCceEEEE--Ccccccccc--------CchhhCCCccCCC
Confidence 4699999988765544332 567899887 3588888887654
No 171
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=49.96 E-value=4.1 Score=20.68 Aligned_cols=12 Identities=33% Similarity=0.681 Sum_probs=8.6
Q ss_pred CCCccccccccc
Q 040080 116 PNCPICRSTANS 127 (192)
Q Consensus 116 ~~CP~Cr~~~~~ 127 (192)
..||+|++.+..
T Consensus 4 ~~CpvCk~q~Pd 15 (28)
T 2jvx_A 4 FCCPKCQYQAPD 15 (28)
T ss_dssp EECTTSSCEESS
T ss_pred ccCccccccCcC
Confidence 358999887653
No 172
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=47.65 E-value=39 Score=20.73 Aligned_cols=20 Identities=15% Similarity=0.069 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 040080 6 IISVIFLFLGIGALIFIHVC 25 (192)
Q Consensus 6 il~~~~~~~~i~~l~~~~~~ 25 (192)
++.++...+++++++.+.++
T Consensus 10 ~LivlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 10 ALIVLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHH
Confidence 34333444444444444433
No 173
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.04 E-value=16 Score=22.29 Aligned_cols=40 Identities=23% Similarity=0.553 Sum_probs=27.4
Q ss_pred CcccccCccccC--CCceEEcCCCCCcccHHhHHHHHcCCCCCccccccccc
Q 040080 78 IECAVCLDKFNK--GDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANS 127 (192)
Q Consensus 78 ~~C~IC~~~~~~--~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 127 (192)
..|+.|-..+.. ....... -+..||..| -.|-.|+.+|..
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a--~~~~wH~~C--------F~C~~C~~~L~~ 47 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICF--QDSQWHSEC--------FNCGKCSVSLVG 47 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEE--TTEEEEGGG--------CBCTTTCCBCSS
T ss_pred CCCccCCCcccCCCCceeEEE--CCcccCccc--------CChhhCCCcCCC
Confidence 459999998875 2233222 567899888 358888888754
No 174
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=44.65 E-value=8.1 Score=19.72 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=18.3
Q ss_pred CcccccCccccCCCceEEcCCCCCcccHHhH
Q 040080 78 IECAVCLDKFNKGDKCRLLPICNHSFHAQCV 108 (192)
Q Consensus 78 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci 108 (192)
..|+.|-..+...+.+. . -|..||..|.
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~-~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--C-LDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--S-SSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE--E-CCeEecccCC
Confidence 35888888765553332 2 5678888873
No 175
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=44.08 E-value=11 Score=23.15 Aligned_cols=9 Identities=33% Similarity=0.789 Sum_probs=4.1
Q ss_pred Ccccccccc
Q 040080 118 CPICRSTAN 126 (192)
Q Consensus 118 CP~Cr~~~~ 126 (192)
|..|+.++.
T Consensus 30 C~~C~~~L~ 38 (76)
T 1iml_A 30 CEKCGKTLT 38 (76)
T ss_dssp CTTTCCBCC
T ss_pred ccccCccCC
Confidence 444444443
No 176
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=44.06 E-value=2.6 Score=25.43 Aligned_cols=35 Identities=26% Similarity=0.649 Sum_probs=20.4
Q ss_pred CcccccCccccCCCceEEcC--C--CCCcccHHhHHHHH
Q 040080 78 IECAVCLDKFNKGDKCRLLP--I--CNHSFHAQCVDAWL 112 (192)
Q Consensus 78 ~~C~IC~~~~~~~~~~~~~~--~--C~H~fh~~Ci~~wl 112 (192)
..||-|...++.......+. . |++.|+..|..+|-
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~ 45 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWE 45 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcc
Confidence 45888888876654333332 1 45556666665554
No 177
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=44.02 E-value=1.9 Score=27.57 Aligned_cols=19 Identities=26% Similarity=0.707 Sum_probs=15.2
Q ss_pred CCCCcccHHhHHHHHcCCCCC
Q 040080 98 ICNHSFHAQCVDAWLLTNPNC 118 (192)
Q Consensus 98 ~C~H~fh~~Ci~~wl~~~~~C 118 (192)
.|++.||..|...|-. .+|
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C 73 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GEC 73 (80)
T ss_dssp CCSCCEETTTTEECCS--SCS
T ss_pred CCCCeeccccCccccC--Ccc
Confidence 4999999999999843 455
No 178
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.62 E-value=9.7 Score=23.54 Aligned_cols=48 Identities=21% Similarity=0.297 Sum_probs=26.8
Q ss_pred CCcccccCccccCCCceEEcCCCC---CcccHHhHHHHHc--CCCCCccccccccc
Q 040080 77 PIECAVCLDKFNKGDKCRLLPICN---HSFHAQCVDAWLL--TNPNCPICRSTANS 127 (192)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~~C~---H~fh~~Ci~~wl~--~~~~CP~Cr~~~~~ 127 (192)
...| ||.... .+ ..+.-..|. ..||..|+.---. ..-.||.|+.....
T Consensus 6 ~~yC-~C~~~~-~g-~MI~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~~k 58 (70)
T 1x4i_A 6 SGYC-ICNQVS-YG-EMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAMKR 58 (70)
T ss_dssp CCCS-TTSCCC-CS-SEECCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHHHHH
T ss_pred CeEE-EcCCCC-CC-CEeEeCCCCCCccCCcccccccCcCCCCCEECCCCCccccc
Confidence 3345 577652 23 233323353 6899999973111 12349999886644
No 179
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=42.90 E-value=50 Score=19.36 Aligned_cols=21 Identities=14% Similarity=0.149 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 040080 4 AIIISVIFLFLGIGALIFIHV 24 (192)
Q Consensus 4 ~iil~~~~~~~~i~~l~~~~~ 24 (192)
.|+++++..++.+++++++.+
T Consensus 14 iIi~svl~GLllL~li~~~Lw 34 (54)
T 2knc_A 14 WVLVGVLGGLLLLTILVLAMW 34 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555543
No 180
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=42.12 E-value=30 Score=21.02 Aligned_cols=6 Identities=17% Similarity=0.623 Sum_probs=2.2
Q ss_pred HHHHHH
Q 040080 4 AIIISV 9 (192)
Q Consensus 4 ~iil~~ 9 (192)
+++.++
T Consensus 31 gv~m~L 36 (65)
T 3arc_H 31 AVFMGL 36 (65)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 181
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=41.54 E-value=15 Score=26.52 Aligned_cols=47 Identities=19% Similarity=0.440 Sum_probs=31.9
Q ss_pred CCCcccccCcccc--CCCceEEcCCCCCcccHHhHHHHHcCCC--CCcccccc
Q 040080 76 SPIECAVCLDKFN--KGDKCRLLPICNHSFHAQCVDAWLLTNP--NCPICRST 124 (192)
Q Consensus 76 ~~~~C~IC~~~~~--~~~~~~~~~~C~H~fh~~Ci~~wl~~~~--~CP~Cr~~ 124 (192)
++..|.+|...|. .+....... |.|.+|..|-. |..+.. .|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~-C~~~VC~~C~~-~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLE-CSLFVCKSCSH-AHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTT-TCCEECGGGEE-CCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCC-CCchhhccccc-ccCCCCcEeeHHHHHH
Confidence 5678999999863 333444445 99999999973 443322 28888764
No 182
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=40.32 E-value=20 Score=25.98 Aligned_cols=36 Identities=19% Similarity=0.427 Sum_probs=25.3
Q ss_pred CCCCcccccCccccCCCceEEcC--CCCCcccHHhHHHHHcC
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLP--ICNHSFHAQCVDAWLLT 114 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~--~C~H~fh~~Ci~~wl~~ 114 (192)
..+.-|.||-+- + .+..-. .|...||..||+.++..
T Consensus 77 G~~~yC~wC~~G---g-~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 77 GYQSYCTICCGG---R-EVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp SSBSSCTTTSCC---S-EEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CCcceeeEecCC---C-eEEeeCCCCCCCchhHHHHHHhcCH
Confidence 445669998864 3 444433 48899999999998754
No 183
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.81 E-value=31 Score=21.38 Aligned_cols=40 Identities=23% Similarity=0.627 Sum_probs=28.9
Q ss_pred CCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccc
Q 040080 76 SPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTAN 126 (192)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 126 (192)
....|+-|-..+..++.+.. -+..||..| -.|-.|+.+|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcC
Confidence 34569999998876655443 466788877 45888988875
No 184
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.61 E-value=39 Score=21.31 Aligned_cols=42 Identities=19% Similarity=0.471 Sum_probs=29.6
Q ss_pred CCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccCC
Q 040080 77 PIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSRR 129 (192)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 129 (192)
...|+-|-..+...+.+ .. -+..||..| -.|-.|..+|....
T Consensus 15 ~~~C~~C~~~I~~~~~v--~a-~~~~~H~~C--------F~C~~C~~~L~~~~ 56 (91)
T 2d8y_A 15 RETCVECQKTVYPMERL--LA-NQQVFHISC--------FRCSYCNNKLSLGT 56 (91)
T ss_dssp SCBCTTTCCBCCTTSEE--EC-SSSEEETTT--------CBCTTTCCBCCTTT
T ss_pred CCcCccCCCccCCceeE--EE-CCCEECCCC--------CeeCCCCCCCCCCC
Confidence 45699999988765443 23 677889888 34888888776544
No 185
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=39.30 E-value=14 Score=22.85 Aligned_cols=42 Identities=24% Similarity=0.524 Sum_probs=28.5
Q ss_pred CCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccCC
Q 040080 77 PIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSRR 129 (192)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 129 (192)
...|+.|-..+..++.+.. -+..||..| -+|-.|+.++....
T Consensus 7 ~~~C~~C~~~I~~~~~~~a---~~~~~H~~C--------F~C~~C~~~L~~~~ 48 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC---DGRSFHRCC--------FLCMVCRKNLDSTT 48 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE---TTEEEESSS--------EECSSSCCEECSSC
T ss_pred CCcCcCcCccccCceeEEe---CCccccccc--------CccCCCCCCCCCCC
Confidence 3469999998866654332 567788777 34888888876543
No 186
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=38.36 E-value=23 Score=29.50 Aligned_cols=46 Identities=20% Similarity=0.456 Sum_probs=30.3
Q ss_pred CCCCcccccCccccCCCceEEcC--CCCCcccHHhHHHHHcC----------CCCCcccccc
Q 040080 75 SSPIECAVCLDKFNKGDKCRLLP--ICNHSFHAQCVDAWLLT----------NPNCPICRST 124 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~~~--~C~H~fh~~Ci~~wl~~----------~~~CP~Cr~~ 124 (192)
..+..|.+|-+- + .+..-. .|...||..||+.++.. .-.|=+|.-.
T Consensus 91 G~~~yCr~C~~G---g-~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 91 GYQSYCSICCSG---E-TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSBCSCTTTCCC---S-SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCcccceEcCCC---C-eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 345568888764 3 233332 49999999999998833 2358888643
No 187
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=38.25 E-value=47 Score=17.74 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 040080 4 AIIISVIFLFLGIGALI 20 (192)
Q Consensus 4 ~iil~~~~~~~~i~~l~ 20 (192)
+++...+++++-.++++
T Consensus 7 ~fiAt~Lfi~iPt~FLl 23 (36)
T 3arc_M 7 GLIATALFVLVPSVFLI 23 (36)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444443333333
No 188
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.15 E-value=28 Score=20.61 Aligned_cols=40 Identities=23% Similarity=0.595 Sum_probs=26.7
Q ss_pred CcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccCC
Q 040080 78 IECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSRR 129 (192)
Q Consensus 78 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 129 (192)
..|+-|-..+... . +.. -+..||..| -+|-.|+.++....
T Consensus 6 ~~C~~C~~~I~~~-~--~~a-~~~~~H~~C--------F~C~~C~~~L~~~~ 45 (70)
T 2d8z_A 6 SGCVQCKKPITTG-G--VTY-REQPWHKEC--------FVCTACRKQLSGQR 45 (70)
T ss_dssp CBCSSSCCBCCSS-E--EES-SSSEEETTT--------SBCSSSCCBCTTSC
T ss_pred CCCcccCCeeccc-e--EEE-CccccCCCC--------CccCCCCCcCCcCc
Confidence 4588888887643 2 222 567888877 35888888875433
No 189
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=38.03 E-value=17 Score=24.60 Aligned_cols=27 Identities=19% Similarity=0.476 Sum_probs=12.4
Q ss_pred cccccCccccCCCceEEcCCCCCcccHHh
Q 040080 79 ECAVCLDKFNKGDKCRLLPICNHSFHAQC 107 (192)
Q Consensus 79 ~C~IC~~~~~~~~~~~~~~~C~H~fh~~C 107 (192)
.|+-|-..+...+.+... -+..||..|
T Consensus 10 ~C~~C~~~I~~~e~~~~a--~~~~~H~~C 36 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRV--KDKVYHLEC 36 (123)
T ss_dssp CCSSSSCCCCTTCCCCCC--SSCCCCTTT
T ss_pred cccCCCCeecCCceEEEE--CCccccccc
Confidence 466666655433222111 345555555
No 190
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=37.79 E-value=19 Score=19.28 Aligned_cols=24 Identities=0% Similarity=-0.196 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 040080 6 IISVIFLFLGIGALIFIHVCIVAR 29 (192)
Q Consensus 6 il~~~~~~~~i~~l~~~~~~~~~~ 29 (192)
..++++.++.+.++-++...|.++
T Consensus 6 L~GIVlGlipvtl~GLfv~Ay~Qy 29 (37)
T 1vf5_G 6 LDGLVLGLVFATLGGLFYAAYQQY 29 (37)
T ss_dssp ---CHHHHHHHHHHHHTHHHHHHT
T ss_pred hhhHHHhhHHHHHHHHHHHHHHHH
Confidence 333443343333333333334444
No 191
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=37.66 E-value=53 Score=18.15 Aligned_cols=12 Identities=17% Similarity=0.235 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 040080 12 LFLGIGALIFIH 23 (192)
Q Consensus 12 ~~~~i~~l~~~~ 23 (192)
++.+++++.++.
T Consensus 17 ~l~GLllL~li~ 28 (42)
T 2k1a_A 17 VLGGLLLLTILV 28 (42)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444433
No 192
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=37.05 E-value=27 Score=21.86 Aligned_cols=11 Identities=18% Similarity=0.033 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 040080 13 FLGIGALIFIH 23 (192)
Q Consensus 13 ~~~i~~l~~~~ 23 (192)
|.++++++.+.
T Consensus 26 fA~vLfi~GI~ 36 (74)
T 2zxe_G 26 VAAVLCVIGII 36 (74)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 33333333333
No 193
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=36.82 E-value=8.1 Score=32.91 Aligned_cols=49 Identities=18% Similarity=0.361 Sum_probs=31.1
Q ss_pred cccccCccccCCCceEEcCCCCCcccHHhHHH---HHc--CCCCCccccccccc
Q 040080 79 ECAVCLDKFNKGDKCRLLPICNHSFHAQCVDA---WLL--TNPNCPICRSTANS 127 (192)
Q Consensus 79 ~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~---wl~--~~~~CP~Cr~~~~~ 127 (192)
...||...+..+...+....|.-.||..|+.- -.. ..-.||.|+....+
T Consensus 6 ~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~~ 59 (447)
T 3kv4_A 6 VYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGP 59 (447)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHCC
T ss_pred eEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccCC
Confidence 35588887653444444445999999999942 111 23469999886544
No 194
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=36.02 E-value=28 Score=20.35 Aligned_cols=39 Identities=15% Similarity=0.366 Sum_probs=27.3
Q ss_pred CcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccC
Q 040080 78 IECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSR 128 (192)
Q Consensus 78 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 128 (192)
..|+.|-..+. +.. +.. -+..||..| -.|-.|+.++...
T Consensus 6 ~~C~~C~~~I~-~~~--~~a-~~~~~H~~C--------F~C~~C~~~L~~~ 44 (66)
T 1nyp_A 6 PICGACRRPIE-GRV--VNA-MGKQWHVEH--------FVCAKCEKPFLGH 44 (66)
T ss_dssp CEETTTTEECC-SCE--ECC-TTSBEETTT--------CBCTTTCCBCSSS
T ss_pred CCCcccCCEec-ceE--EEE-CccccccCc--------CEECCCCCCCCCC
Confidence 46999998886 322 233 677899887 3588898888643
No 195
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=35.91 E-value=29 Score=21.02 Aligned_cols=41 Identities=22% Similarity=0.522 Sum_probs=28.0
Q ss_pred CcccccCccccC---CCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccC
Q 040080 78 IECAVCLDKFNK---GDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSR 128 (192)
Q Consensus 78 ~~C~IC~~~~~~---~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 128 (192)
..|+-|-..+.. ....... -+..||..| -+|-.|+.++...
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 59 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAY--EGQSWHDYC--------FHCKKCSVNLANK 59 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEE--TTEEEETTT--------CBCSSSCCBCTTS
T ss_pred ccCcccCCcccCCCCCceeEEE--CcceeCccc--------CEehhcCCCCCCC
Confidence 469999998874 2232222 567899887 3588998888644
No 196
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.85 E-value=25 Score=21.69 Aligned_cols=40 Identities=20% Similarity=0.465 Sum_probs=26.9
Q ss_pred CcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCccccccccc
Q 040080 78 IECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANS 127 (192)
Q Consensus 78 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 127 (192)
..|+.|-..+.....+.. . -+..||..| -.|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~~~~~~~~-a-~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELF-Y-EDRHFHEGC--------FRCCRCQRSLAD 55 (82)
T ss_dssp CBCTTTCCBCCSSCCBCC-C-SSCCCBTTT--------SBCTTTCCBCSS
T ss_pred CcCccCCCccccCcEEEE-e-CCccccccC--------CeecCCCCccCC
Confidence 469999998874333222 1 467788877 358888888764
No 197
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.47 E-value=23 Score=22.37 Aligned_cols=42 Identities=24% Similarity=0.373 Sum_probs=29.0
Q ss_pred CCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccCC
Q 040080 76 SPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSRR 129 (192)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 129 (192)
....|+-|-..+. +..+. . -+..||..| -.|-.|+.+|....
T Consensus 24 ~~~~C~~C~~~I~-~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~~~~ 65 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFLV--A-LGKSWHPEE--------FNCAHCKNTMAYIG 65 (90)
T ss_dssp CCCBBSSSCCBCC-SCEEE--E-TTEEECTTT--------CBCSSSCCBCSSSC
T ss_pred CCCCCccCCCEec-ceEEE--E-CCccccccC--------CccCCCCCCCCCCE
Confidence 3457999999884 32322 2 677899887 35888988886543
No 198
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=34.30 E-value=46 Score=20.82 Aligned_cols=42 Identities=14% Similarity=0.265 Sum_probs=29.2
Q ss_pred CCCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccCC
Q 040080 76 SPIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSRR 129 (192)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 129 (192)
....|+-|-..+... . +.- -+..||..| -.|-.|+..|....
T Consensus 24 ~~~~C~~C~~~I~~~-~--~~a-~~~~~H~~C--------F~C~~C~~~L~~~~ 65 (89)
T 1x64_A 24 RMPLCDKCGSGIVGA-V--VKA-RDKYRHPEC--------FVCADCNLNLKQKG 65 (89)
T ss_dssp SCCBCTTTCCBCCSC-C--EES-SSCEECTTT--------CCCSSSCCCTTTSC
T ss_pred cCCCcccCCCEeccc-E--EEE-CCceECccC--------CEecCCCCCCCCCC
Confidence 345699999988752 2 222 677899888 35888988886543
No 199
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=33.83 E-value=2.9 Score=27.02 Aligned_cols=28 Identities=21% Similarity=0.627 Sum_probs=18.4
Q ss_pred EcCCCCCcccHHhHHHHHcCC--CCCcccc
Q 040080 95 LLPICNHSFHAQCVDAWLLTN--PNCPICR 122 (192)
Q Consensus 95 ~~~~C~H~fh~~Ci~~wl~~~--~~CP~Cr 122 (192)
.-+.|++.||..|-.+|=..| .+|..-+
T Consensus 45 ~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~ 74 (86)
T 2ct7_A 45 TCPQCHQTFCVRCKRQWEEQHRGRSCEDFQ 74 (86)
T ss_dssp ECTTTCCEECSSSCSBCCTTTTTSCHHHHH
T ss_pred EeCCCCCccccccCCchhhcCCCCChHHHH
Confidence 344599999999998883222 3465543
No 200
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=32.21 E-value=11 Score=24.99 Aligned_cols=41 Identities=17% Similarity=0.497 Sum_probs=25.8
Q ss_pred CcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCccccccccc
Q 040080 78 IECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANS 127 (192)
Q Consensus 78 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 127 (192)
..||.|..++... =++.+|..|-.. +.....||-|.+++..
T Consensus 33 ~~CP~Cq~eL~~~--------g~~~hC~~C~~~-f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQHVLDQD--------NGHARCRSCGEF-IEMKALCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCSBEEEE--------TTEEEETTTCCE-EEEEEECTTTCSBCEE
T ss_pred ccCccCCCcceec--------CCEEECccccch-hhccccCcchhhHHHH
Confidence 5699999886432 233345555333 2345569999998854
No 201
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=32.10 E-value=37 Score=22.90 Aligned_cols=51 Identities=10% Similarity=0.246 Sum_probs=33.7
Q ss_pred CCCCcccccCccccC-CCceEEcCCCCCcccHHhHHHHHcCCCCCccccccccc
Q 040080 75 SSPIECAVCLDKFNK-GDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANS 127 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~-~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 127 (192)
.+-+.|..|...+.. +..... . =|..||..|...-+.....|..|..++..
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~-~-~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYY-K-LGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEE-E-TTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred HHHcccCcCCCccccCCCeEEE-E-CCEEeecCchhhhCCCccChhhcCCccCc
Confidence 345778888887753 223222 2 56778888888755444479999888854
No 202
>1vf5_E Protein PET L; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.24.1 PDB: 2d2c_E* 2e74_E* 2e75_E* 2e76_E*
Probab=31.46 E-value=59 Score=16.86 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=11.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Q 040080 1 MVMAIIISVIFLFLGIGALIFIH 23 (192)
Q Consensus 1 m~~~iil~~~~~~~~i~~l~~~~ 23 (192)
|+++++--++++.+.+.+...++
T Consensus 1 mi~a~i~yi~~l~~~f~iA~GL~ 23 (32)
T 1vf5_E 1 MILGAVFYIVFIALFFGIAVGII 23 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHH
Confidence 56666655555544444444443
No 203
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=31.21 E-value=33 Score=29.45 Aligned_cols=48 Identities=27% Similarity=0.549 Sum_probs=30.6
Q ss_pred CCcccccCccccCCCceEEcCCCCCcccHHhHHHHHc-----CCCCCccccccc
Q 040080 77 PIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLL-----TNPNCPICRSTA 125 (192)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~-----~~~~CP~Cr~~~ 125 (192)
...| ||...+..+...+....|.-.||..|+.---. ..-.||.|+...
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred CeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 3445 99887754444444445999999999953111 124599998754
No 204
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=30.94 E-value=32 Score=20.20 Aligned_cols=41 Identities=20% Similarity=0.451 Sum_probs=27.5
Q ss_pred cccccCccccCCCceEEcCCCCCccc--HHhHHHHHcCCCCCcccccccccCC
Q 040080 79 ECAVCLDKFNKGDKCRLLPICNHSFH--AQCVDAWLLTNPNCPICRSTANSRR 129 (192)
Q Consensus 79 ~C~IC~~~~~~~~~~~~~~~C~H~fh--~~Ci~~wl~~~~~CP~Cr~~~~~~~ 129 (192)
.|+-|-..+..++..... -+..|| ..| -+|-.|+.++....
T Consensus 4 ~C~~C~~~I~~~~~~v~a--~~~~wH~~~~C--------F~C~~C~~~L~~~~ 46 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTY--NNFSWHASTEC--------FLCSCCSKCLIGQK 46 (65)
T ss_dssp ECTTTSSEECTTSCEEEE--TTEEEETTTTT--------SBCTTTCCBCTTSC
T ss_pred CCcCCCCeeccCceEEEE--CCCccCCCCCC--------EECCCCCCcCCCCc
Confidence 588888888754332222 567888 888 35888888885443
No 205
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=30.66 E-value=28 Score=23.47 Aligned_cols=50 Identities=6% Similarity=0.050 Sum_probs=34.5
Q ss_pred CCcccccCccccC-CCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccC
Q 040080 77 PIECAVCLDKFNK-GDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSR 128 (192)
Q Consensus 77 ~~~C~IC~~~~~~-~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 128 (192)
-+.|..|...+.. +.... .. =|..||..|...-+.....|-.|..+|...
T Consensus 32 CF~C~~C~~~L~~~~~~~~-~~-~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSY-TK-SGMILCRNDYIRLFGNSGAGGSGGHMGSGG 82 (122)
T ss_dssp HHCCSSSCCCTTTSEECCE-EE-TTEEECHHHHHHHHCCCCSSSCSSCCSCCE
T ss_pred CCCcCCCCCcccccCCeEE-EE-CCeeecHHHHHHHcCCCCccccCCCCcCch
Confidence 3568888887752 11222 22 577899999988776555899999988753
No 206
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=30.27 E-value=1e+02 Score=19.22 Aligned_cols=13 Identities=38% Similarity=0.680 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 040080 15 GIGALIFIHVCIV 27 (192)
Q Consensus 15 ~i~~l~~~~~~~~ 27 (192)
++.++++.++||.
T Consensus 26 alg~li~gcwcyl 38 (90)
T 1zza_A 26 ALGALILGCWCYL 38 (90)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHH
Confidence 4444455554444
No 207
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.09 E-value=34 Score=20.24 Aligned_cols=41 Identities=20% Similarity=0.498 Sum_probs=26.8
Q ss_pred CCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccCC
Q 040080 77 PIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSRR 129 (192)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 129 (192)
...|+-|-..+.. ..+.. -+..||..|+ +|-.|+.+|....
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~~~~ 45 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIKA---MNNSWHPECF--------RCDLCQEVLADIG 45 (70)
T ss_dssp SSBCSSSCCBCCS-CCEEE---TTEEECTTTS--------BCSSSCCBCSSSC
T ss_pred CCcCccCCCEecc-eEEEE---CcccccccCC--------EeCCCCCcCCCCc
Confidence 3468888888763 22222 5667888773 5888888776543
No 208
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=29.99 E-value=44 Score=21.31 Aligned_cols=45 Identities=20% Similarity=0.402 Sum_probs=21.7
Q ss_pred CCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccc
Q 040080 77 PIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTAN 126 (192)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 126 (192)
-+.|..|...+... ... .. =|..||..|... .....|..|..+|.
T Consensus 33 CF~C~~C~~~L~~~-~~~-~~-~g~~yC~~cy~~--~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 33 CFRCAKCLHPLANE-TFV-AK-DNKILCNKCTTR--EDSPKCKGCFKAIV 77 (101)
T ss_dssp TCCCSSSCCCTTSS-CCE-EE-TTEEECHHHHTT--CCCCBCSSSCCBCC
T ss_pred CCcccccCCCCCcC-eeE-Cc-CCEEEChhHhhh--hcCCccccCCCccc
Confidence 45566666655322 111 11 345566555432 12345777766664
No 209
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.86 E-value=43 Score=20.46 Aligned_cols=40 Identities=15% Similarity=0.300 Sum_probs=28.2
Q ss_pred CCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccC
Q 040080 77 PIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSR 128 (192)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 128 (192)
...|+-|-..+... . +.- -+..||..|+ +|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~~~--~-~~a-~~~~~H~~CF--------~C~~C~~~L~~~ 54 (79)
T 1x62_A 15 LPMCDKCGTGIVGV--F-VKL-RDRHRHPECY--------VCTDCGTNLKQK 54 (79)
T ss_dssp CCCCSSSCCCCCSS--C-EEC-SSCEECTTTT--------SCSSSCCCHHHH
T ss_pred CCccccCCCCccCc--E-EEE-CcceeCcCcC--------eeCCCCCCCCCC
Confidence 45699999988653 2 222 6788998883 588888887643
No 210
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.65 E-value=66 Score=19.63 Aligned_cols=40 Identities=18% Similarity=0.380 Sum_probs=27.7
Q ss_pred CCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccccC
Q 040080 77 PIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANSR 128 (192)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 128 (192)
...|+-|-..+. +..+ .- -+..||..| -+|-.|+.+|...
T Consensus 15 ~~~C~~C~~~I~-~~~v--~a-~~~~~H~~C--------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIID-EQPL--IF-KNDPYHPDH--------FNCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCC-SCCC--CC-SSSCCCTTT--------SBCSSSCCBCCTT
T ss_pred CCCCccCCCEec-ceEE--EE-CcceeCCCC--------CEeCCCCCccCCC
Confidence 456999999886 3222 22 677788877 4688898888654
No 211
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=28.95 E-value=10 Score=23.53 Aligned_cols=19 Identities=32% Similarity=0.611 Sum_probs=13.3
Q ss_pred HHHcCCCCCcccccccccC
Q 040080 110 AWLLTNPNCPICRSTANSR 128 (192)
Q Consensus 110 ~wl~~~~~CP~Cr~~~~~~ 128 (192)
+|+..--.||.|+.++...
T Consensus 3 ~~LLeiL~CP~ck~~L~~~ 21 (69)
T 2pk7_A 3 TKLLDILACPICKGPLKLS 21 (69)
T ss_dssp CCGGGTCCCTTTCCCCEEC
T ss_pred hHHHhheeCCCCCCcCeEe
Confidence 4455556799999988653
No 212
>3j00_Z Cell division protein FTSQ, ingrowth of WALL at septum; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; HET: PEV PGV; 7.10A {Escherichia coli O157}
Probab=28.30 E-value=1.3e+02 Score=19.72 Aligned_cols=24 Identities=8% Similarity=0.303 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 040080 6 IISVIFLFLGIGALIFIHVCIVAR 29 (192)
Q Consensus 6 il~~~~~~~~i~~l~~~~~~~~~~ 29 (192)
++++++++++++.+++..+....|
T Consensus 4 ~~G~~F~l~Vl~~l~~~~~~~~~W 27 (98)
T 3j00_Z 4 LAGILFLLTVLTTVLVSGWVVLGW 27 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred echhhHHHHHHHHHHHHHHHHHHH
Confidence 345555555554555544444444
No 213
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=28.22 E-value=60 Score=26.28 Aligned_cols=41 Identities=12% Similarity=0.283 Sum_probs=30.4
Q ss_pred CCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCccccc
Q 040080 77 PIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRS 123 (192)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 123 (192)
-..|+.-+..+..+.....-|-||-.||.+. +.+.|++|.-
T Consensus 262 f~iCa~s~tPIY~g~~~v~Cp~cgA~y~~~~------kG~lC~vC~l 302 (320)
T 3mkr_B 262 FDICAASYRPIYRGKPVEKCPLSGACYSPEF------KGQICKVTTV 302 (320)
T ss_dssp CCBBTTTCCBCCTTSCCEECTTTCCEECGGG------TTSBCTTTSS
T ss_pred cceecCCCccccCCCCCccCCCCCCeechhh------CCCCCCCCcC
Confidence 3457777777666777777788999998754 4677999954
No 214
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=28.12 E-value=9.2 Score=23.58 Aligned_cols=20 Identities=25% Similarity=0.291 Sum_probs=14.3
Q ss_pred HHHHcCCCCCcccccccccC
Q 040080 109 DAWLLTNPNCPICRSTANSR 128 (192)
Q Consensus 109 ~~wl~~~~~CP~Cr~~~~~~ 128 (192)
++|+..--.||.|+.++...
T Consensus 4 d~~LLeiL~CP~ck~~L~~~ 23 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLRYL 23 (67)
T ss_dssp CGGGTCCCBCTTTCCBCEEE
T ss_pred CHHHHHHhCCCCCCCcCeEe
Confidence 34555566799999988654
No 215
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=27.83 E-value=67 Score=21.42 Aligned_cols=27 Identities=22% Similarity=0.576 Sum_probs=18.2
Q ss_pred CCCcccHHhHH------HHHcC-----CCCCccccccc
Q 040080 99 CNHSFHAQCVD------AWLLT-----NPNCPICRSTA 125 (192)
Q Consensus 99 C~H~fh~~Ci~------~wl~~-----~~~CP~Cr~~~ 125 (192)
|+..||..|+. .-+.. ...||.|-..-
T Consensus 8 c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~ 45 (140)
T 2ku7_A 8 CDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 45 (140)
T ss_dssp CSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTS
T ss_pred CCCccCCcccccCHHHHHHHhhccccceeeCccccccc
Confidence 99999999961 11222 35699997643
No 216
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=27.49 E-value=16 Score=17.96 Aligned_cols=10 Identities=30% Similarity=1.128 Sum_probs=7.1
Q ss_pred CCcccccccc
Q 040080 117 NCPICRSTAN 126 (192)
Q Consensus 117 ~CP~Cr~~~~ 126 (192)
.||+|.+.+.
T Consensus 8 qcpvcqq~mp 17 (29)
T 3vhs_A 8 QCPVCQQMMP 17 (29)
T ss_dssp ECTTTCCEEE
T ss_pred eChHHHHhCc
Confidence 4888877554
No 217
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=27.29 E-value=39 Score=22.96 Aligned_cols=39 Identities=21% Similarity=0.413 Sum_probs=28.4
Q ss_pred CCcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccc
Q 040080 77 PIECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTAN 126 (192)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 126 (192)
...|+-|-..+.....+.. -+..||..| -+|-.|+.+|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYA---MDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEE---TTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEe---CCcEEcccc--------cCcCcCCCccc
Confidence 3579999998865422322 677899888 45999999886
No 218
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.74 E-value=57 Score=19.89 Aligned_cols=38 Identities=18% Similarity=0.528 Sum_probs=26.3
Q ss_pred CcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCccccccccc
Q 040080 78 IECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANS 127 (192)
Q Consensus 78 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 127 (192)
..|+.|-..+.. ..+. . -+..||..| -+|-.|+.++..
T Consensus 16 ~~C~~C~~~I~~-~~v~--a-~~~~wH~~C--------F~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIEG-EVVS--A-LGKTYHPDC--------FVCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCCS-CCEE--E-TTEEECTTT--------SSCSSSCCCCCS
T ss_pred CcCccccCEecc-ceEE--E-CCceeCccC--------CccccCCCCCCC
Confidence 369999998863 3322 2 567888877 358888888754
No 219
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=25.57 E-value=3.7 Score=19.69 Aligned_cols=12 Identities=33% Similarity=0.949 Sum_probs=8.5
Q ss_pred cccHHhHHHHHc
Q 040080 102 SFHAQCVDAWLL 113 (192)
Q Consensus 102 ~fh~~Ci~~wl~ 113 (192)
.||..|-.+|+.
T Consensus 6 ffcetcskpwlv 17 (26)
T 1loi_A 6 FFCETCSKPWLV 17 (26)
T ss_dssp HHHHTSSCTTGG
T ss_pred HHHHhcCCchhh
Confidence 477777777764
No 220
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.20 E-value=30 Score=20.43 Aligned_cols=38 Identities=18% Similarity=0.479 Sum_probs=24.0
Q ss_pred CcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCccccccccc
Q 040080 78 IECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANS 127 (192)
Q Consensus 78 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 127 (192)
..|+-|-..+.. +.+.. -+..||..| -+|-.|+.++..
T Consensus 6 ~~C~~C~~~I~~-~~~~a---~~~~~H~~C--------F~C~~C~~~L~~ 43 (69)
T 2cur_A 6 SGCVKCNKAITS-GGITY---QDQPWHADC--------FVCVTCSKKLAG 43 (69)
T ss_dssp CCCSSSCCCCCT-TCEEE---TTEEECTTT--------TBCTTTCCBCTT
T ss_pred CCCcccCCEeCc-ceEEE---CccccccCc--------CEECCCCCCCCC
Confidence 458888887753 23222 456778777 347788777754
No 221
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=25.09 E-value=5.6 Score=32.18 Aligned_cols=49 Identities=18% Similarity=0.298 Sum_probs=30.7
Q ss_pred CCCCcccccCccccCCCceEE-cCCCC--CcccHHhHHHHHcCCCCCcccccc
Q 040080 75 SSPIECAVCLDKFNKGDKCRL-LPICN--HSFHAQCVDAWLLTNPNCPICRST 124 (192)
Q Consensus 75 ~~~~~C~IC~~~~~~~~~~~~-~~~C~--H~fh~~Ci~~wl~~~~~CP~Cr~~ 124 (192)
.....||+|-..-... .+.. -..=| +.+|..|-..|-.....||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s-~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAG-MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEE-EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCcee-EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 3456799998864322 1110 00123 457778888887778889999775
No 222
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=24.98 E-value=32 Score=22.01 Aligned_cols=13 Identities=31% Similarity=0.889 Sum_probs=8.3
Q ss_pred CcccccCccccCC
Q 040080 78 IECAVCLDKFNKG 90 (192)
Q Consensus 78 ~~C~IC~~~~~~~ 90 (192)
..||.|..++...
T Consensus 3 ~~CP~C~~~l~~~ 15 (81)
T 2jrp_A 3 ITCPVCHHALERN 15 (81)
T ss_dssp CCCSSSCSCCEEC
T ss_pred CCCCCCCCccccC
Confidence 4578887776443
No 223
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=23.84 E-value=36 Score=24.80 Aligned_cols=9 Identities=33% Similarity=1.018 Sum_probs=4.7
Q ss_pred CCccccccc
Q 040080 117 NCPICRSTA 125 (192)
Q Consensus 117 ~CP~Cr~~~ 125 (192)
+|-.|...+
T Consensus 99 ~C~~C~~~L 107 (188)
T 1rut_X 99 TCSTCRNRL 107 (188)
T ss_dssp BCTTTCCBC
T ss_pred eECCCCCCC
Confidence 355555554
No 224
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.60 E-value=50 Score=20.05 Aligned_cols=38 Identities=21% Similarity=0.584 Sum_probs=25.9
Q ss_pred CcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCccccccccc
Q 040080 78 IECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTANS 127 (192)
Q Consensus 78 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~~ 127 (192)
..|+-|-..+... . +.. -+..||..| -+|-.|+.++..
T Consensus 16 ~~C~~C~~~I~~~-~--v~a-~~~~~H~~C--------F~C~~C~~~L~~ 53 (80)
T 2cuq_A 16 PRCARCSKTLTQG-G--VTY-RDQPWHREC--------LVCTGCQTPLAG 53 (80)
T ss_dssp CCCTTTCCCCCSC-C--EES-SSSEECTTT--------CBCSSSCCBCTT
T ss_pred CcCCCCCCEecCc-E--EEE-CCchhhhhh--------CCcccCCCcCCC
Confidence 4688888887543 2 222 567788877 358888888754
No 225
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.28 E-value=48 Score=19.94 Aligned_cols=37 Identities=19% Similarity=0.437 Sum_probs=23.7
Q ss_pred CcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCcccccccc
Q 040080 78 IECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRSTAN 126 (192)
Q Consensus 78 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~~~ 126 (192)
..|+-|-..+... . +.. -+..||..| -+|-.|..++.
T Consensus 6 ~~C~~C~~~I~~~-~--v~a-~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITGR-V--LEA-GEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSSC-C--BCC-SSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecCe-e--EEe-CCCCCCCCc--------CEeCCCCCCCC
Confidence 3588888777542 1 222 667788777 34777777765
No 226
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=23.20 E-value=24 Score=26.17 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=14.0
Q ss_pred CCCCCcccHHhHHHHHcCCCCCcccccc
Q 040080 97 PICNHSFHAQCVDAWLLTNPNCPICRST 124 (192)
Q Consensus 97 ~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~ 124 (192)
+.|||++-.. .-...||+|..+
T Consensus 159 ~~CG~~~~g~------~~p~~CP~C~~~ 180 (191)
T 1lko_A 159 RNCGYVHEGT------GAPELCPACAHP 180 (191)
T ss_dssp TTTCCEEEEE------ECCSBCTTTCCB
T ss_pred CCCCCEeeCC------CCCCCCCCCcCC
Confidence 3488886522 123479999875
No 227
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=22.00 E-value=30 Score=20.33 Aligned_cols=13 Identities=15% Similarity=0.613 Sum_probs=8.9
Q ss_pred CCCcccccCcccc
Q 040080 76 SPIECAVCLDKFN 88 (192)
Q Consensus 76 ~~~~C~IC~~~~~ 88 (192)
+-..|++|...+.
T Consensus 9 ~iL~CP~c~~~L~ 21 (56)
T 2kpi_A 9 EILACPACHAPLE 21 (56)
T ss_dssp TSCCCSSSCSCEE
T ss_pred hheeCCCCCCcce
Confidence 3456999888653
No 228
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=21.24 E-value=39 Score=21.67 Aligned_cols=33 Identities=24% Similarity=0.572 Sum_probs=20.5
Q ss_pred CCcccccCccccCCCceEE-cCCCCCcccHHhHHH
Q 040080 77 PIECAVCLDKFNKGDKCRL-LPICNHSFHAQCVDA 110 (192)
Q Consensus 77 ~~~C~IC~~~~~~~~~~~~-~~~C~H~fh~~Ci~~ 110 (192)
...|.||...- .+..+.- .+.|.-.||..|-..
T Consensus 17 ~l~C~iC~~~~-~GAciqC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 17 KLTCYLCKQKG-VGASIQCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CCCBTTTTBCC-SSCEEECSCTTTCCEEEHHHHHH
T ss_pred cCCCcCCCCCC-CcEeEecCCCCCCCcCcHHHHHH
Confidence 34699997541 1322222 133888999999776
No 229
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=21.15 E-value=65 Score=26.13 Aligned_cols=40 Identities=10% Similarity=0.040 Sum_probs=29.1
Q ss_pred CcccccCccccCCCceEEcCCCCCcccHHhHHHHHcCCCCCccccc
Q 040080 78 IECAVCLDKFNKGDKCRLLPICNHSFHAQCVDAWLLTNPNCPICRS 123 (192)
Q Consensus 78 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~ 123 (192)
..|+.-+..+..+.....-|-||-.||.+. +.+.|++|.-
T Consensus 272 ~iCa~s~tPIY~g~~~v~Cp~cgA~y~~~~------kG~lC~vC~l 311 (325)
T 3mv2_A 272 DICAATYKPIYEDTPSVSDPLTGSKYVITE------KDKIDRIAMI 311 (325)
T ss_dssp EECTTTCCEEESSSCEEECTTTCCEEEGGG------TTSBCSSSSC
T ss_pred eeecCCcccccCCCCCccCCCCCCeechhh------CCCCCCCCcC
Confidence 347777776666777777777999998654 4677999954
No 230
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=21.02 E-value=53 Score=23.83 Aligned_cols=22 Identities=27% Similarity=0.691 Sum_probs=13.9
Q ss_pred cCCCCCcccHHhHHHHHcCCCCCcccccc
Q 040080 96 LPICNHSFHAQCVDAWLLTNPNCPICRST 124 (192)
Q Consensus 96 ~~~C~H~fh~~Ci~~wl~~~~~CP~Cr~~ 124 (192)
.+.|||++-. .-...||+|..+
T Consensus 141 C~~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 141 CPICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp CTTTCCEEES-------CCCSBCTTTCCB
T ss_pred eCCCCCeeCC-------CCCCCCCCCCCC
Confidence 3348888651 223479999764
No 231
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=20.58 E-value=1.1e+02 Score=21.79 Aligned_cols=19 Identities=26% Similarity=0.672 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 040080 6 IISVIFLFLGIGALIFIHV 24 (192)
Q Consensus 6 il~~~~~~~~i~~l~~~~~ 24 (192)
+++.+++++++.+++++.+
T Consensus 81 v~g~v~~~i~~s~~~f~~~ 99 (147)
T 1v54_D 81 VVGAAMFFIGFTALLLIWE 99 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555666655555543
No 232
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=20.32 E-value=1.2e+02 Score=18.20 Aligned_cols=36 Identities=25% Similarity=0.535 Sum_probs=27.9
Q ss_pred CCCcccccCccccCCCceEEcCCCCCcccH-HhHHHH
Q 040080 76 SPIECAVCLDKFNKGDKCRLLPICNHSFHA-QCVDAW 111 (192)
Q Consensus 76 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~-~Ci~~w 111 (192)
-...|+-|...+..+.....-.-.-|.||. .||..+
T Consensus 19 ~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~f 55 (62)
T 2das_A 19 AKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF 55 (62)
T ss_dssp SSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHH
T ss_pred cccChhhccchhhcCceeeeecCchhheechHHHccc
Confidence 356799999999988776666558899885 688775
Done!