Query 040083
Match_columns 635
No_of_seqs 216 out of 695
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 07:25:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040083.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040083hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wee_A PHD finger family prote 99.6 6.5E-17 2.2E-21 134.5 4.0 68 565-632 4-71 (72)
2 1wew_A DNA-binding family prot 99.4 2.8E-14 9.6E-19 120.5 2.2 56 574-630 13-75 (78)
3 2rsd_A E3 SUMO-protein ligase 99.4 3.4E-14 1.2E-18 117.1 2.4 54 574-628 7-66 (68)
4 3o70_A PHD finger protein 13; 99.4 1.4E-13 5E-18 113.9 2.3 53 573-627 15-67 (68)
5 3o7a_A PHD finger protein 13 v 99.4 9.2E-14 3.1E-18 109.0 0.6 49 576-626 3-51 (52)
6 3kqi_A GRC5, PHD finger protei 99.3 1.6E-13 5.3E-18 115.0 0.0 57 572-628 5-62 (75)
7 2lv9_A Histone-lysine N-methyl 99.3 1E-12 3.4E-17 115.6 4.9 54 574-629 25-78 (98)
8 1wep_A PHF8; structural genomi 99.3 6.2E-13 2.1E-17 112.3 1.8 56 573-628 8-64 (79)
9 1we9_A PHD finger family prote 99.3 8.2E-13 2.8E-17 107.0 2.4 58 573-630 2-61 (64)
10 1wem_A Death associated transc 99.2 3E-13 1E-17 113.2 -1.9 58 574-632 13-75 (76)
11 2kgg_A Histone demethylase jar 99.1 1.2E-11 4.1E-16 97.0 -0.1 46 580-625 6-52 (52)
12 2k16_A Transcription initiatio 99.0 2.2E-10 7.7E-15 95.3 3.6 59 571-630 12-71 (75)
13 3kv4_A PHD finger protein 8; e 98.9 8.7E-11 3E-15 127.4 -2.6 56 574-629 2-58 (447)
14 2ri7_A Nucleosome-remodeling f 98.9 1.2E-10 4.2E-15 110.2 -1.7 55 574-628 5-60 (174)
15 3kv5_D JMJC domain-containing 98.9 1.6E-10 5.3E-15 126.6 -1.4 57 572-628 32-89 (488)
16 3c6w_A P28ING5, inhibitor of g 98.8 9.3E-10 3.2E-14 88.7 1.3 51 574-628 6-59 (59)
17 1wen_A Inhibitor of growth fam 98.8 3E-09 1E-13 88.7 3.9 53 574-630 13-68 (71)
18 1x4i_A Inhibitor of growth pro 98.8 7.5E-10 2.6E-14 92.2 0.1 52 573-628 2-56 (70)
19 1weu_A Inhibitor of growth fam 98.8 2.5E-09 8.6E-14 93.4 3.4 54 574-631 33-89 (91)
20 2g6q_A Inhibitor of growth pro 98.8 1.6E-09 5.4E-14 88.2 1.4 51 574-628 8-61 (62)
21 2vnf_A ING 4, P29ING4, inhibit 98.7 2.2E-09 7.5E-14 86.7 1.2 51 574-628 7-60 (60)
22 2jmi_A Protein YNG1, ING1 homo 98.7 4.4E-09 1.5E-13 91.7 1.7 50 573-626 22-75 (90)
23 3lqh_A Histone-lysine N-methyl 98.5 1.8E-08 6.2E-13 97.8 0.3 51 579-629 4-65 (183)
24 2xb1_A Pygopus homolog 2, B-ce 98.5 1.9E-08 6.6E-13 89.5 0.2 50 581-630 8-64 (105)
25 2vpb_A Hpygo1, pygopus homolog 98.4 1.2E-08 4.3E-13 83.7 -1.8 48 578-625 10-64 (65)
26 3pur_A Lysine-specific demethy 98.3 1.9E-07 6.6E-12 102.9 2.8 56 573-628 36-95 (528)
27 1f62_A Transcription factor WS 98.0 3.6E-06 1.2E-10 65.0 3.1 45 581-627 5-50 (51)
28 2l5u_A Chromodomain-helicase-D 97.6 2.2E-05 7.4E-10 63.3 2.6 52 574-629 8-60 (61)
29 2ku3_A Bromodomain-containing 97.6 9.2E-06 3.2E-10 67.7 0.3 51 575-628 15-67 (71)
30 2e6r_A Jumonji/ARID domain-con 97.6 1.2E-05 4.2E-10 69.9 0.5 48 579-628 18-67 (92)
31 1mm2_A MI2-beta; PHD, zinc fin 97.5 3.9E-05 1.3E-09 61.8 3.0 52 574-630 6-59 (61)
32 2yql_A PHD finger protein 21A; 97.5 2.7E-05 9.1E-10 61.6 1.7 48 574-626 6-55 (56)
33 3rsn_A SET1/ASH2 histone methy 97.5 7.8E-05 2.7E-09 72.2 5.3 54 575-628 3-60 (177)
34 2yt5_A Metal-response element- 97.5 1.9E-05 6.6E-10 63.9 0.7 53 577-629 6-63 (66)
35 1xwh_A Autoimmune regulator; P 97.4 4.4E-05 1.5E-09 62.3 2.1 51 576-631 7-59 (66)
36 3asl_A E3 ubiquitin-protein li 97.4 0.00011 3.7E-09 61.0 3.9 45 581-627 23-69 (70)
37 2e6s_A E3 ubiquitin-protein li 97.4 0.00016 5.3E-09 61.2 4.7 44 581-626 31-76 (77)
38 2l43_A N-teminal domain from h 97.3 3.4E-05 1.1E-09 66.7 -0.2 49 577-628 26-76 (88)
39 2lri_C Autoimmune regulator; Z 97.2 0.00019 6.4E-09 59.0 3.3 50 579-633 14-65 (66)
40 2puy_A PHD finger protein 21A; 97.2 8.7E-05 3E-09 59.3 1.2 45 579-628 7-53 (60)
41 3shb_A E3 ubiquitin-protein li 97.0 0.00041 1.4E-08 58.7 3.7 44 581-626 31-76 (77)
42 3ask_A E3 ubiquitin-protein li 97.0 0.00034 1.2E-08 70.1 3.4 47 579-627 176-225 (226)
43 3v43_A Histone acetyltransfera 96.9 0.00075 2.6E-08 60.1 4.5 46 581-627 66-112 (112)
44 3u5n_A E3 ubiquitin-protein li 96.9 0.00048 1.6E-08 67.1 3.3 44 580-628 10-55 (207)
45 4bbq_A Lysine-specific demethy 96.7 0.00083 2.8E-08 59.6 3.6 44 586-629 69-116 (117)
46 4gne_A Histone-lysine N-methyl 96.6 0.0008 2.7E-08 60.3 2.4 45 575-625 13-60 (107)
47 2kwj_A Zinc finger protein DPF 96.6 0.00091 3.1E-08 59.8 2.6 47 579-627 60-108 (114)
48 1wev_A Riken cDNA 1110020M19; 96.3 0.0014 4.6E-08 56.5 2.1 53 577-629 16-74 (88)
49 2ysm_A Myeloid/lymphoid or mix 96.1 0.003 1E-07 55.7 3.4 48 579-628 56-105 (111)
50 2ysm_A Myeloid/lymphoid or mix 94.9 0.018 6E-07 50.8 3.8 46 579-625 9-55 (111)
51 1fp0_A KAP-1 corepressor; PHD 93.9 0.052 1.8E-06 47.1 4.4 47 577-628 25-73 (88)
52 3v43_A Histone acetyltransfera 89.9 0.052 1.8E-06 48.2 -0.4 39 587-625 21-62 (112)
53 2rno_A Putative DNA-binding pr 88.0 0.18 6.2E-06 45.0 1.7 41 508-557 69-109 (110)
54 2kwj_A Zinc finger protein DPF 82.6 0.2 6.9E-06 44.6 -0.7 38 587-624 18-58 (114)
55 2lbm_A Transcriptional regulat 82.0 0.44 1.5E-05 44.6 1.4 51 574-628 60-118 (142)
56 3ql9_A Transcriptional regulat 80.3 0.34 1.2E-05 44.8 -0.0 52 574-629 54-113 (129)
57 3ivp_A Putative transposon-rel 78.5 2.5 8.5E-05 36.8 5.0 105 158-277 8-114 (126)
58 2l7p_A Histone-lysine N-methyl 71.8 1.7 5.7E-05 38.6 2.1 33 590-623 26-58 (100)
59 1yop_A KTI11P; zinc finger, me 71.7 1.2 4.2E-05 38.2 1.1 41 565-605 11-58 (83)
60 2jr7_A DPH3 homolog; DESR1, CS 71.1 1.1 3.6E-05 39.1 0.6 42 566-607 12-60 (89)
61 3op9_A PLI0006 protein; struct 69.1 6.7 0.00023 33.3 5.3 101 161-276 8-112 (114)
62 1wge_A Hypothetical protein 26 68.8 1.9 6.3E-05 37.1 1.6 40 566-605 19-65 (83)
63 1b0n_A Protein (SINR protein); 61.3 11 0.00038 31.4 5.1 97 164-274 3-107 (111)
64 2jx3_A Protein DEK; alpha heli 54.9 4.3 0.00015 37.4 1.5 80 181-279 21-109 (131)
65 1v2y_A 3300001G02RIK protein; 51.1 9.4 0.00032 33.7 3.0 21 497-517 22-42 (105)
66 2e61_A Zinc finger CW-type PWW 49.2 16 0.00054 30.3 3.9 32 590-623 16-49 (69)
67 2v9v_A Selenocysteine-specific 49.2 27 0.00092 30.5 5.7 62 301-363 59-128 (135)
68 2lq6_A Bromodomain-containing 48.3 5.9 0.0002 33.8 1.2 34 574-609 14-50 (87)
69 2hqh_E Restin; beta/BETA struc 40.7 5.9 0.0002 27.3 0.0 13 70-82 1-13 (26)
70 3lfp_A CSP231I C protein; tran 36.6 27 0.00093 28.8 3.6 87 163-269 2-92 (98)
71 1weq_A PHD finger protein 7; s 34.4 44 0.0015 28.8 4.5 51 577-630 26-82 (85)
72 1iym_A EL5; ring-H2 finger, ub 33.3 24 0.00083 25.9 2.4 45 580-628 8-53 (55)
73 1wil_A KIAA1045 protein; ring 29.8 21 0.00071 31.1 1.7 51 579-631 17-80 (89)
74 1r7c_A Genome polyprotein; mem 29.7 18 0.00061 25.9 1.0 17 156-172 1-17 (31)
75 3a9j_A Ubiquitin; protein comp 29.5 34 0.0012 26.4 2.8 20 497-516 15-34 (76)
76 2l6l_A DNAJ homolog subfamily 27.8 17 0.00057 33.3 0.8 32 572-604 107-145 (155)
77 1v5n_A PDI-like hypothetical p 27.5 20 0.00067 30.6 1.2 32 578-611 48-80 (89)
78 3mtn_B UBA80, ubcep1, ubiquiti 27.2 41 0.0014 26.6 3.0 20 497-516 18-37 (85)
79 2dzj_A Synaptic glycoprotein S 26.5 28 0.00096 29.2 1.9 24 498-521 29-52 (88)
80 3fwb_A Cell division control p 26.0 2.6E+02 0.0087 23.5 8.1 101 215-352 39-142 (161)
81 1ndd_A NEDD8, protein (ubiquit 25.1 45 0.0015 25.6 2.8 20 497-516 15-34 (76)
82 1k78_A Paired box protein PAX5 25.1 3.1E+02 0.011 23.8 8.7 67 189-256 7-74 (149)
83 2kzr_A Ubiquitin thioesterase 25.1 40 0.0014 27.7 2.6 21 496-516 13-34 (86)
84 1nee_A EIF-2-beta, probable tr 24.6 7.8 0.00027 36.0 -2.0 97 490-601 29-132 (138)
85 2dzi_A Ubiquitin-like protein 24.5 45 0.0015 26.2 2.7 19 497-515 22-40 (81)
86 2pv0_B DNA (cytosine-5)-methyl 24.2 20 0.00069 38.5 0.7 52 573-628 89-149 (386)
87 3n3k_B Ubiquitin; hydrolase, p 24.1 47 0.0016 26.3 2.8 20 497-516 18-37 (85)
88 2bwf_A Ubiquitin-like protein 22.8 57 0.002 25.3 3.0 20 497-516 18-37 (77)
89 3p57_A Myocyte-specific enhanc 22.1 66 0.0023 27.9 3.5 52 221-272 28-87 (90)
90 2ct0_A Non-SMC element 1 homol 22.0 61 0.0021 26.8 3.1 54 576-634 14-69 (74)
91 3a1b_A DNA (cytosine-5)-methyl 20.9 26 0.0009 33.4 0.7 53 573-629 75-136 (159)
92 1v86_A DNA segment, CHR 7, way 20.8 63 0.0022 27.1 3.0 20 497-516 31-50 (95)
93 2jnf_A Troponin C; stretch act 20.1 3.8E+02 0.013 22.4 8.4 104 215-351 30-136 (158)
No 1
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.64 E-value=6.5e-17 Score=134.47 Aligned_cols=68 Identities=46% Similarity=0.882 Sum_probs=60.3
Q ss_pred cccccccCCCCceEEeecCCCCCCCcceeeccccCceeeccccccCCCCCCCCceecCCCcccccCCC
Q 040083 565 YGQIYENGMVNCVVECACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIPHIFLCNRCEQEIVHLS 632 (635)
Q Consensus 565 ~~~r~e~g~e~~~VrCiCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~~~vP~~y~C~~C~~~~~~~~ 632 (635)
...++|++++++.++|+||..++||++||+||.|+.|||+.|++|...+.+|+.|+|+.|..+..+..
T Consensus 4 ~~~~~e~~~~~~~~~C~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~pss 71 (72)
T 1wee_A 4 GSSGMERGVDNWKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGPSS 71 (72)
T ss_dssp CSCCCSCSSCSSEECCTTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCSSCC
T ss_pred ccccccCCCCCcceEeeCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCCCCC
Confidence 34688888999999999999988898999999999999999999997666789999999998776543
No 2
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.43 E-value=2.8e-14 Score=120.49 Aligned_cols=56 Identities=30% Similarity=0.821 Sum_probs=49.5
Q ss_pred CCceEEeecCCCCCCCcceeecc--ccCceeeccccccCCCC-----CCCCceecCCCcccccC
Q 040083 574 VNCVVECACGADEDDGERMVSCD--ICEVWQHTRCARIPNNE-----EIPHIFLCNRCEQEIVH 630 (635)
Q Consensus 574 e~~~VrCiCG~~dDDGe~MI~CD--~C~vWQH~~CvgI~~~~-----~vP~~y~C~~C~~~~~~ 630 (635)
+++.++|+||..+++| +||+|| .|+.|||+.||||...+ ..|+.|+|+.|..++..
T Consensus 13 ~~~~~~CiC~~~~~~g-~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~ 75 (78)
T 1wew_A 13 PEIKVRCVCGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGP 75 (78)
T ss_dssp CCCCCCCSSCCCCCCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSC
T ss_pred CCCCEEeECCCcCCCC-CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccCC
Confidence 5689999999997777 999999 99999999999998754 57899999999987654
No 3
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=99.42 E-value=3.4e-14 Score=117.06 Aligned_cols=54 Identities=33% Similarity=0.893 Sum_probs=46.1
Q ss_pred CCceEEeecCCCCCCCcceeeccc--cCceeeccccccCCC----CCCCCceecCCCcccc
Q 040083 574 VNCVVECACGADEDDGERMVSCDI--CEVWQHTRCARIPNN----EEIPHIFLCNRCEQEI 628 (635)
Q Consensus 574 e~~~VrCiCG~~dDDGe~MI~CD~--C~vWQH~~CvgI~~~----~~vP~~y~C~~C~~~~ 628 (635)
.+..|+|+||..+++| +||+||. |+.|||+.||||... ..+|+.|+|+.|+.++
T Consensus 7 ~e~~v~C~C~~~~~~g-~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~r 66 (68)
T 2rsd_A 7 PEAKVRCICSSTMVND-SMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLSR 66 (68)
T ss_dssp SSCEECCTTCCCSCCS-CEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHHHH
T ss_pred CCCCEEeECCCCcCCC-CEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccCcc
Confidence 4568999999998888 9999994 999999999999753 2457899999998764
No 4
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=99.36 E-value=1.4e-13 Score=113.86 Aligned_cols=53 Identities=30% Similarity=0.894 Sum_probs=46.2
Q ss_pred CCCceEEeecCCCCCCCcceeeccccCceeeccccccCCCCCCCCceecCCCccc
Q 040083 573 MVNCVVECACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIPHIFLCNRCEQE 627 (635)
Q Consensus 573 ~e~~~VrCiCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~~~vP~~y~C~~C~~~ 627 (635)
.+...++|+||..++ |++||+||.|+.|||+.|+||... ++|+.|+|+.|...
T Consensus 15 ~~~~~~~CiC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~-~~~~~~~C~~C~~s 67 (68)
T 3o70_A 15 YFQGLVTCFCMKPFA-GRPMIECNECHTWIHLSCAKIRKS-NVPEVFVCQKCRDS 67 (68)
T ss_dssp TTTTCCCSTTCCCCT-TCCEEECTTTCCEEETTTTTCCTT-SCCSSCCCHHHHTC
T ss_pred CCCCceEeECCCcCC-CCCEEECCCCCccccccccCcCcc-cCCCcEECCCCCCC
Confidence 367789999998765 569999999999999999999864 67899999999764
No 5
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=99.35 E-value=9.2e-14 Score=108.96 Aligned_cols=49 Identities=33% Similarity=0.953 Sum_probs=42.9
Q ss_pred ceEEeecCCCCCCCcceeeccccCceeeccccccCCCCCCCCceecCCCcc
Q 040083 576 CVVECACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIPHIFLCNRCEQ 626 (635)
Q Consensus 576 ~~VrCiCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~~~vP~~y~C~~C~~ 626 (635)
..++|+||..++ |++||+||.|+.|||+.|+||... ++|+.|+|+.|+.
T Consensus 3 d~~~C~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~-~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 3 DLVTCFCMKPFA-GRPMIECNECHTWIHLSCAKIRKS-NVPEVFVCQKCRD 51 (52)
T ss_dssp TCBCSTTCCBCT-TCCEEECTTTCCEEETTTTTCCGG-GCCSSCCCHHHHT
T ss_pred cCeEEEeCCcCC-CCCEEEcCCCCccccccccCCCcc-cCCCcEECcCCCC
Confidence 368999999866 559999999999999999999864 5789999999975
No 6
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=99.31 E-value=1.6e-13 Score=115.04 Aligned_cols=57 Identities=30% Similarity=0.662 Sum_probs=48.4
Q ss_pred CCCCceEEeecCCCCCCCcceeeccccCceeeccccccCCCC-CCCCceecCCCcccc
Q 040083 572 GMVNCVVECACGADEDDGERMVSCDICEVWQHTRCARIPNNE-EIPHIFLCNRCEQEI 628 (635)
Q Consensus 572 g~e~~~VrCiCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~~-~vP~~y~C~~C~~~~ 628 (635)
+.+++.++|+|+..+|++++||+||.|+.|||+.|+|+.+.+ ..++.|+|+.|..+.
T Consensus 5 ~~~~~~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 5 SMATVPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp TTCCCCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred CCCCCeeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 457899999999987766699999999999999999998643 234789999998764
No 7
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=99.31 E-value=1e-12 Score=115.61 Aligned_cols=54 Identities=43% Similarity=1.006 Sum_probs=47.5
Q ss_pred CCceEEeecCCCCCCCcceeeccccCceeeccccccCCCCCCCCceecCCCccccc
Q 040083 574 VNCVVECACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIPHIFLCNRCEQEIV 629 (635)
Q Consensus 574 e~~~VrCiCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~~~vP~~y~C~~C~~~~~ 629 (635)
+++.|+|+||..+++| .||+||.|..|||..|++++. ..+|+.|+|+.|+++..
T Consensus 25 ~~d~vrCiC~~~~~~~-~mi~Cd~C~~w~H~~C~~~~~-~~~p~~w~C~~C~~~~~ 78 (98)
T 2lv9_A 25 GTDVTRCICGFTHDDG-YMICCDKCSVWQHIDCMGIDR-QHIPDTYLCERCQPRNL 78 (98)
T ss_dssp CCCBCCCTTSCCSCSS-CEEEBTTTCBEEETTTTTCCT-TSCCSSBCCTTTSSSCC
T ss_pred CCCCEEeECCCccCCC-cEEEcCCCCCcCcCcCCCCCc-cCCCCCEECCCCcCCCC
Confidence 4678999999998777 999999999999999999974 46789999999987654
No 8
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.28 E-value=6.2e-13 Score=112.31 Aligned_cols=56 Identities=27% Similarity=0.616 Sum_probs=48.1
Q ss_pred CCCceEEeecCCCCCCCcceeeccccCceeeccccccCCCC-CCCCceecCCCcccc
Q 040083 573 MVNCVVECACGADEDDGERMVSCDICEVWQHTRCARIPNNE-EIPHIFLCNRCEQEI 628 (635)
Q Consensus 573 ~e~~~VrCiCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~~-~vP~~y~C~~C~~~~ 628 (635)
.+.+.++|+|+..+|++++||+||.|+.|||..|++|...+ ..++.|+|+.|....
T Consensus 8 ~~~~~~~C~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 8 MALVPVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCCCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccCCccEEEcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 36789999999998766699999999999999999998632 236899999999765
No 9
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.28 E-value=8.2e-13 Score=106.96 Aligned_cols=58 Identities=28% Similarity=0.680 Sum_probs=48.5
Q ss_pred CCCceEEe-ecCCCCCCCcceeeccccCceeeccccccCCCC-CCCCceecCCCcccccC
Q 040083 573 MVNCVVEC-ACGADEDDGERMVSCDICEVWQHTRCARIPNNE-EIPHIFLCNRCEQEIVH 630 (635)
Q Consensus 573 ~e~~~VrC-iCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~~-~vP~~y~C~~C~~~~~~ 630 (635)
.++...+| +|+..++++++||+||.|+.|||..|+|+...+ ..++.|+|+.|..+...
T Consensus 2 s~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~~ 61 (64)
T 1we9_A 2 SSGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGP 61 (64)
T ss_dssp CCSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTCS
T ss_pred CCCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcCCC
Confidence 35677889 999998777799999999999999999998643 23689999999887653
No 10
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.25 E-value=3e-13 Score=113.19 Aligned_cols=58 Identities=24% Similarity=0.530 Sum_probs=48.8
Q ss_pred CCceEEeecCCCCCCCcceeeccccCceeeccccccCCCCC-----CCCceecCCCcccccCCC
Q 040083 574 VNCVVECACGADEDDGERMVSCDICEVWQHTRCARIPNNEE-----IPHIFLCNRCEQEIVHLS 632 (635)
Q Consensus 574 e~~~VrCiCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~~~-----vP~~y~C~~C~~~~~~~~ 632 (635)
+.+.++|+|+..++++ +||+||.|+.|||..|+|+..... .++.|+|+.|..+..+.|
T Consensus 13 d~~~~~C~C~~~~~~~-~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p~~ 75 (76)
T 1wem_A 13 DPNALYCICRQPHNNR-FMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGPSS 75 (76)
T ss_dssp CTTCCCSTTCCCCCSS-CEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCSSC
T ss_pred CCCCCEEECCCccCCC-CEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCcCC
Confidence 5678999999987654 999999999999999999985321 368999999998887765
No 11
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=99.07 E-value=1.2e-11 Score=96.99 Aligned_cols=46 Identities=24% Similarity=0.588 Sum_probs=39.0
Q ss_pred eecCCCCCCCcceeecc-ccCceeeccccccCCCCCCCCceecCCCc
Q 040083 580 CACGADEDDGERMVSCD-ICEVWQHTRCARIPNNEEIPHIFLCNRCE 625 (635)
Q Consensus 580 CiCG~~dDDGe~MI~CD-~C~vWQH~~CvgI~~~~~vP~~y~C~~C~ 625 (635)
|+|+.+++|+++||+|| .|+.|||+.|+|+...+..++.|+|+.|+
T Consensus 6 c~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 6 QNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp TTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred CCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 68999988888999999 89999999999998643235899999995
No 12
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.97 E-value=2.2e-10 Score=95.31 Aligned_cols=59 Identities=27% Similarity=0.664 Sum_probs=47.3
Q ss_pred cCCCCceEEe-ecCCCCCCCcceeeccccCceeeccccccCCCCCCCCceecCCCcccccC
Q 040083 571 NGMVNCVVEC-ACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIPHIFLCNRCEQEIVH 630 (635)
Q Consensus 571 ~g~e~~~VrC-iCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~~~vP~~y~C~~C~~~~~~ 630 (635)
++.++...+| +|+..+ ||+.||+||.|..|||+.|++++........|+|+.|..+...
T Consensus 12 ~~~~~~~~~C~~C~~~~-~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 12 DEWGNQIWICPGCNKPD-DGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp CSSSCEEECBTTTTBCC-SSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred cccCCCCcCCCCCCCCC-CCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 3345677889 999885 4669999999999999999999865433478999999876543
No 13
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=98.88 E-value=8.7e-11 Score=127.44 Aligned_cols=56 Identities=25% Similarity=0.592 Sum_probs=46.9
Q ss_pred CCceEEeecCCCCCCCcceeeccccCceeeccccccCCCC-CCCCceecCCCccccc
Q 040083 574 VNCVVECACGADEDDGERMVSCDICEVWQHTRCARIPNNE-EIPHIFLCNRCEQEIV 629 (635)
Q Consensus 574 e~~~VrCiCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~~-~vP~~y~C~~C~~~~~ 629 (635)
+++.++|+|+..+|++++||+||.|+.|||+.|+|+...+ ..++.|+|+.|..+..
T Consensus 2 ~~~~~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~ 58 (447)
T 3kv4_A 2 ASVPVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHG 58 (447)
T ss_dssp -CCCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHC
T ss_pred CCCCeEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccC
Confidence 5789999999987756699999999999999999998632 2358999999987653
No 14
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=98.87 E-value=1.2e-10 Score=110.21 Aligned_cols=55 Identities=29% Similarity=0.771 Sum_probs=45.7
Q ss_pred CCceEEeecCCCCCCCcceeeccccCceeeccccccCCCC-CCCCceecCCCcccc
Q 040083 574 VNCVVECACGADEDDGERMVSCDICEVWQHTRCARIPNNE-EIPHIFLCNRCEQEI 628 (635)
Q Consensus 574 e~~~VrCiCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~~-~vP~~y~C~~C~~~~ 628 (635)
+++.++|+|+..+|+++.||+||.|..|||..|+|+...+ ..++.|+|+.|....
T Consensus 5 ~~~~~~C~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 5 SDTKLYCICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp --CCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCCcEeeCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchh
Confidence 5688999999987766699999999999999999997532 347899999998754
No 15
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=98.86 E-value=1.6e-10 Score=126.63 Aligned_cols=57 Identities=25% Similarity=0.531 Sum_probs=47.9
Q ss_pred CCCCceEEeecCCCCCCCcceeeccccCceeeccccccCCCC-CCCCceecCCCcccc
Q 040083 572 GMVNCVVECACGADEDDGERMVSCDICEVWQHTRCARIPNNE-EIPHIFLCNRCEQEI 628 (635)
Q Consensus 572 g~e~~~VrCiCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~~-~vP~~y~C~~C~~~~ 628 (635)
+.+...++|+|+..+|++++||+||.|+.|||+.|+|+...+ ..++.|+|+.|..+.
T Consensus 32 ~~~~~~~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 32 PPPPPPVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CCCCCCEETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred cCCCCCeEEeCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 346789999999987756699999999999999999998643 336889999998654
No 16
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.80 E-value=9.3e-10 Score=88.71 Aligned_cols=51 Identities=31% Similarity=0.704 Sum_probs=40.5
Q ss_pred CCceEEeecCCCCCCCcceeeccc--cC-ceeeccccccCCCCCCCCceecCCCcccc
Q 040083 574 VNCVVECACGADEDDGERMVSCDI--CE-VWQHTRCARIPNNEEIPHIFLCNRCEQEI 628 (635)
Q Consensus 574 e~~~VrCiCG~~dDDGe~MI~CD~--C~-vWQH~~CvgI~~~~~vP~~y~C~~C~~~~ 628 (635)
++..++|+|+..+ +| .||+||. |. .|+|..|+|+...+ ...|+|+.|..++
T Consensus 6 ~~e~~yC~C~~~~-~g-~mi~CD~~~C~~~wfH~~Cvgl~~~p--~~~w~Cp~C~~~r 59 (59)
T 3c6w_A 6 SNEPTYCLCHQVS-YG-EMIGCDNPDCPIEWFHFACVDLTTKP--KGKWFCPRCVQEK 59 (59)
T ss_dssp --CCEETTTTEEC-CS-EEEECSCTTCSSCEEETGGGTCSSCC--SSCCCCHHHHCC-
T ss_pred CCCCcEEECCCCC-CC-CeeEeeCCCCCCCCEecccCCcccCC--CCCEECcCccCcC
Confidence 4678999999874 57 7999999 77 79999999998533 3789999997653
No 17
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.78 E-value=3e-09 Score=88.72 Aligned_cols=53 Identities=30% Similarity=0.658 Sum_probs=43.4
Q ss_pred CCceEEeecCCCCCCCcceeeccc--cC-ceeeccccccCCCCCCCCceecCCCcccccC
Q 040083 574 VNCVVECACGADEDDGERMVSCDI--CE-VWQHTRCARIPNNEEIPHIFLCNRCEQEIVH 630 (635)
Q Consensus 574 e~~~VrCiCG~~dDDGe~MI~CD~--C~-vWQH~~CvgI~~~~~vP~~y~C~~C~~~~~~ 630 (635)
++..++|+|+..+ +| .||+||. |. .|+|..|+++...+ ...|+|+.|......
T Consensus 13 ~~~~~~C~C~~~~-~g-~MI~CD~~~C~~~wfH~~Cvgl~~~p--~g~w~Cp~C~~~~~k 68 (71)
T 1wen_A 13 PNEPTYCLCHQVS-YG-EMIGCDNPDCSIEWFHFACVGLTTKP--RGKWFCPRCSQESGP 68 (71)
T ss_dssp TTSCCCSTTCCCS-CS-SEECCSCSSCSCCCEETTTTTCSSCC--SSCCCCTTTSSCSSS
T ss_pred CCCCCEEECCCCC-CC-CEeEeeCCCCCCccEecccCCcCcCC--CCCEECCCCCccccc
Confidence 4577899999874 57 7999999 77 79999999997532 378999999877643
No 18
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.77 E-value=7.5e-10 Score=92.16 Aligned_cols=52 Identities=23% Similarity=0.556 Sum_probs=43.3
Q ss_pred CCCceEEeecCCCCCCCcceeeccccC---ceeeccccccCCCCCCCCceecCCCcccc
Q 040083 573 MVNCVVECACGADEDDGERMVSCDICE---VWQHTRCARIPNNEEIPHIFLCNRCEQEI 628 (635)
Q Consensus 573 ~e~~~VrCiCG~~dDDGe~MI~CD~C~---vWQH~~CvgI~~~~~vP~~y~C~~C~~~~ 628 (635)
.++..++|+|+.. ++| .||+||.|+ .|+|..||++... ....|+|+.|....
T Consensus 2 ~~~~~~yC~C~~~-~~g-~MI~CD~cdC~~~WfH~~Cvgl~~~--p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 2 SSGSSGYCICNQV-SYG-EMVGCDNQDCPIEWFHYGCVGLTEA--PKGKWYCPQCTAAM 56 (70)
T ss_dssp CCSCCCCSTTSCC-CCS-SEECCSCTTCSCCCEEHHHHTCSSC--CSSCCCCHHHHHHH
T ss_pred CCCCCeEEEcCCC-CCC-CEeEeCCCCCCccCCcccccccCcC--CCCCEECCCCCccc
Confidence 3567899999987 567 899999985 8999999999863 36799999997654
No 19
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.77 E-value=2.5e-09 Score=93.42 Aligned_cols=54 Identities=30% Similarity=0.633 Sum_probs=44.5
Q ss_pred CCceEEeecCCCCCCCcceeeccc--cC-ceeeccccccCCCCCCCCceecCCCcccccCC
Q 040083 574 VNCVVECACGADEDDGERMVSCDI--CE-VWQHTRCARIPNNEEIPHIFLCNRCEQEIVHL 631 (635)
Q Consensus 574 e~~~VrCiCG~~dDDGe~MI~CD~--C~-vWQH~~CvgI~~~~~vP~~y~C~~C~~~~~~~ 631 (635)
++..++|+|+..+ +| .||+||. |. .|+|..|++|...+ +..|+|+.|.....+.
T Consensus 33 ~~e~~yCiC~~~~-~g-~MI~CD~~dC~~~WfH~~CVgl~~~p--~g~W~Cp~C~~~~~k~ 89 (91)
T 1weu_A 33 PNEPTYCLCHQVS-YG-EMIGCDNPDCSIEWFHFACVGLTTKP--RGKWFCPRCSQESGPS 89 (91)
T ss_dssp SCCCBCSTTCCBC-CS-CCCCCSCSSCSCCCCCSTTTTCSSCC--CSSCCCTTTCCCCSSS
T ss_pred CCCCcEEECCCCC-CC-CEeEecCCCCCCCCEecccCCcCcCC--CCCEECcCccCcCCcC
Confidence 4578999999874 56 8999999 76 79999999998532 4789999999877654
No 20
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.75 E-value=1.6e-09 Score=88.23 Aligned_cols=51 Identities=25% Similarity=0.658 Sum_probs=40.9
Q ss_pred CCceEEeecCCCCCCCcceeeccc--cC-ceeeccccccCCCCCCCCceecCCCcccc
Q 040083 574 VNCVVECACGADEDDGERMVSCDI--CE-VWQHTRCARIPNNEEIPHIFLCNRCEQEI 628 (635)
Q Consensus 574 e~~~VrCiCG~~dDDGe~MI~CD~--C~-vWQH~~CvgI~~~~~vP~~y~C~~C~~~~ 628 (635)
.+..++|+|+.. ++| .||+||. |. .|+|..|+|+...+ ...|+|+.|..++
T Consensus 8 ~~e~~yC~C~~~-~~g-~MI~CD~c~C~~~WfH~~Cvgl~~~p--~~~w~Cp~C~~~r 61 (62)
T 2g6q_A 8 PNEPTYCLCNQV-SYG-EMIGCDNEQCPIEWFHFSCVSLTYKP--KGKWYCPKCRGDN 61 (62)
T ss_dssp --CCEETTTTEE-CCS-EEEECSCTTCSSCEEETGGGTCSSCC--SSCCCCHHHHTCC
T ss_pred CCCCcEEECCCC-CCC-CeeeeeCCCCCcccEecccCCcCcCC--CCCEECcCcccCC
Confidence 456899999987 457 8999999 54 99999999998532 4799999998754
No 21
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.72 E-value=2.2e-09 Score=86.68 Aligned_cols=51 Identities=31% Similarity=0.709 Sum_probs=39.7
Q ss_pred CCceEEeecCCCCCCCcceeeccc--cC-ceeeccccccCCCCCCCCceecCCCcccc
Q 040083 574 VNCVVECACGADEDDGERMVSCDI--CE-VWQHTRCARIPNNEEIPHIFLCNRCEQEI 628 (635)
Q Consensus 574 e~~~VrCiCG~~dDDGe~MI~CD~--C~-vWQH~~CvgI~~~~~vP~~y~C~~C~~~~ 628 (635)
++..++|+|+..+ +| .||+||. |. .|+|..|+|+...+ ...|+|+.|..++
T Consensus 7 ~~e~~~C~C~~~~-~g-~mi~CD~cdC~~~wfH~~Cvgl~~~p--~g~w~C~~C~~~r 60 (60)
T 2vnf_A 7 PNEPTYCLCHQVS-YG-EMIGCDNPDCSIEWFHFACVGLTTKP--RGKWFCPRCSQER 60 (60)
T ss_dssp --CCEETTTTEEC-CS-EEEECSCTTCSSCEEETGGGTCSSCC--SSCCCCHHHHC--
T ss_pred CCCCCEEECCCcC-CC-CEEEeCCCCCCCceEehhcCCCCcCC--CCCEECcCccCcC
Confidence 4578999999874 56 8999999 65 89999999987532 3789999997653
No 22
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.67 E-value=4.4e-09 Score=91.73 Aligned_cols=50 Identities=26% Similarity=0.571 Sum_probs=40.3
Q ss_pred CCCceEEeecCCCCCCCcceeeccccC---ceeeccccccCCCCCCCCceecCC-Ccc
Q 040083 573 MVNCVVECACGADEDDGERMVSCDICE---VWQHTRCARIPNNEEIPHIFLCNR-CEQ 626 (635)
Q Consensus 573 ~e~~~VrCiCG~~dDDGe~MI~CD~C~---vWQH~~CvgI~~~~~vP~~y~C~~-C~~ 626 (635)
+++..++|+|+.. ++| .||+||.|+ .|+|..||||...+ ...|+|+. |..
T Consensus 22 ~~~~~~yCiC~~~-~~g-~MI~CD~c~C~~eWfH~~CVgl~~~p--~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 22 NNQEEVYCFCRNV-SYG-PMVACDNPACPFEWFHYGCVGLKQAP--KGKWYCSKDCKE 75 (90)
T ss_dssp --CCSCCSTTTCC-CSS-SEECCCSSSCSCSCEETTTSSCSSCT--TSCCCSSHHHHH
T ss_pred CCCCCcEEEeCCC-CCC-CEEEecCCCCccccCcCccCCCCcCC--CCCccCChhhcc
Confidence 4677899999986 456 699999977 99999999998532 36899999 864
No 23
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=98.48 E-value=1.8e-08 Score=97.81 Aligned_cols=51 Identities=25% Similarity=0.816 Sum_probs=40.8
Q ss_pred Ee-ecCCCCCCCcc---eeeccccCceeeccccccCCC-----CCCCC--ceecCCCccccc
Q 040083 579 EC-ACGADEDDGER---MVSCDICEVWQHTRCARIPNN-----EEIPH--IFLCNRCEQEIV 629 (635)
Q Consensus 579 rC-iCG~~dDDGe~---MI~CD~C~vWQH~~CvgI~~~-----~~vP~--~y~C~~C~~~~~ 629 (635)
.| +|+..++++++ ||+||.|+.|+|+.|+||.+. ...|+ .|+|+.|..+..
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 48 69998777654 999999999999999999752 11243 899999998754
No 24
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=98.47 E-value=1.9e-08 Score=89.48 Aligned_cols=50 Identities=22% Similarity=0.699 Sum_probs=39.2
Q ss_pred ecCCCCCCCcceeecc-ccCceeeccccccCCCC------CCCCceecCCCcccccC
Q 040083 581 ACGADEDDGERMVSCD-ICEVWQHTRCARIPNNE------EIPHIFLCNRCEQEIVH 630 (635)
Q Consensus 581 iCG~~dDDGe~MI~CD-~C~vWQH~~CvgI~~~~------~vP~~y~C~~C~~~~~~ 630 (635)
+|+...+|+..||+|| .|+.|+|..||||+... +....|+|+.|..+...
T Consensus 8 iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~ 64 (105)
T 2xb1_A 8 ACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEG 64 (105)
T ss_dssp TTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTT
T ss_pred CCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCC
Confidence 7888765545899998 99999999999998521 22378999999877643
No 25
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=98.43 E-value=1.2e-08 Score=83.72 Aligned_cols=48 Identities=21% Similarity=0.651 Sum_probs=38.7
Q ss_pred EEeecCCCCCCCcceeecc-ccCceeeccccccCCCC------CCCCceecCCCc
Q 040083 578 VECACGADEDDGERMVSCD-ICEVWQHTRCARIPNNE------EIPHIFLCNRCE 625 (635)
Q Consensus 578 VrCiCG~~dDDGe~MI~CD-~C~vWQH~~CvgI~~~~------~vP~~y~C~~C~ 625 (635)
+-++|+...+++++||+|| .|+.|+|..||||+... +.-..|+|+.|.
T Consensus 10 ~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 10 PCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp BCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred cCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 3348998877788999999 99999999999998621 122489999985
No 26
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=98.29 E-value=1.9e-07 Score=102.88 Aligned_cols=56 Identities=18% Similarity=0.427 Sum_probs=40.8
Q ss_pred CCCceEEeecCCCC---CCCcceeeccccCceeeccccccCCCC-CCCCceecCCCcccc
Q 040083 573 MVNCVVECACGADE---DDGERMVSCDICEVWQHTRCARIPNNE-EIPHIFLCNRCEQEI 628 (635)
Q Consensus 573 ~e~~~VrCiCG~~d---DDGe~MI~CD~C~vWQH~~CvgI~~~~-~vP~~y~C~~C~~~~ 628 (635)
.+.....+.+..+. +++++||+||.|+.|+|+.||||+... ...+.|+|+.|....
T Consensus 36 ~~~~~~~~s~kk~~~~~n~~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~~ 95 (528)
T 3pur_A 36 KEKEKPLMSKKKSHHHKKNDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPHT 95 (528)
T ss_dssp ------CCSCCCTTTTTTSTTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHHHH
T ss_pred hhhhhccccccccccCCCcCCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCcCCC
Confidence 35556777776653 466799999999999999999998643 346899999998753
No 27
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=97.96 E-value=3.6e-06 Score=65.03 Aligned_cols=45 Identities=27% Similarity=0.644 Sum_probs=35.7
Q ss_pred ecCCCCCCCcceeeccccCceeeccccccCCCCCCC-CceecCCCccc
Q 040083 581 ACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIP-HIFLCNRCEQE 627 (635)
Q Consensus 581 iCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~~~vP-~~y~C~~C~~~ 627 (635)
+|+..++++ .||.||.|..|+|..|++.+-. .+| ..|+|+.|...
T Consensus 5 vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~-~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 5 VCRKKGEDD-KLILCDECNKAFHLFCLRPALY-EVPDGEWQCPACQPA 50 (51)
T ss_dssp TTCCSSCCS-CCEECTTTCCEECHHHHCTTCC-SCCSSCCSCTTTSCC
T ss_pred CCCCCCCCC-CEEECCCCChhhCcccCCCCcC-CCCCCcEECcCcccc
Confidence 788876555 9999999999999999975422 344 58999999754
No 28
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=97.62 E-value=2.2e-05 Score=63.33 Aligned_cols=52 Identities=23% Similarity=0.517 Sum_probs=39.2
Q ss_pred CCceEEe-ecCCCCCCCcceeeccccCceeeccccccCCCCCCCCceecCCCccccc
Q 040083 574 VNCVVEC-ACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIPHIFLCNRCEQEIV 629 (635)
Q Consensus 574 e~~~VrC-iCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~~~vP~~y~C~~C~~~~~ 629 (635)
+.+...| +|+. .| .|+.||.|..|+|..|++.+-.......|+|+.|..+..
T Consensus 8 ~~~~~~C~vC~~---~g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~g~ 60 (61)
T 2l5u_A 8 TDHQDYCEVCQQ---GG-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEGI 60 (61)
T ss_dssp SCCCSSCTTTSC---CS-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGGSC
T ss_pred CCCCCCCccCCC---CC-cEEECCCCChhhhhhccCCCCCCCCCCceECcccccccc
Confidence 3445568 6885 34 899999999999999999863322236899999987653
No 29
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=97.61 E-value=9.2e-06 Score=67.73 Aligned_cols=51 Identities=29% Similarity=0.668 Sum_probs=39.4
Q ss_pred CceEEeecCCCC-CCCcceeeccccCceeeccccccCCCCCCC-CceecCCCcccc
Q 040083 575 NCVVECACGADE-DDGERMVSCDICEVWQHTRCARIPNNEEIP-HIFLCNRCEQEI 628 (635)
Q Consensus 575 ~~~VrCiCG~~d-DDGe~MI~CD~C~vWQH~~CvgI~~~~~vP-~~y~C~~C~~~~ 628 (635)
+..+-.+|+..+ ++++.||.||.|..|+|..|++++. +| ..|+|+.|..+.
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~---vP~g~W~C~~C~~~~ 67 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY---IPEGQWLCRHCLQSR 67 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSS---CCSSCCCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCc---CCCCCcCCccCcCcC
Confidence 333334998764 3445999999999999999999873 44 589999998754
No 30
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.57 E-value=1.2e-05 Score=69.89 Aligned_cols=48 Identities=31% Similarity=0.702 Sum_probs=38.1
Q ss_pred Ee-ecCCCCCCCcceeeccccCceeeccccccCCCCCCC-CceecCCCcccc
Q 040083 579 EC-ACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIP-HIFLCNRCEQEI 628 (635)
Q Consensus 579 rC-iCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~~~vP-~~y~C~~C~~~~ 628 (635)
.| +|+..++.+ .||.||.|..|+|..|++.+-. .+| ..|+|+.|....
T Consensus 18 ~C~vC~~~~~~~-~ll~CD~C~~~~H~~Cl~Ppl~-~~P~g~W~C~~C~~~~ 67 (92)
T 2e6r_A 18 ICQVCSRGDEDD-KLLFCDGCDDNYHIFCLLPPLP-EIPRGIWRCPKCILAE 67 (92)
T ss_dssp CCSSSCCSGGGG-GCEECTTTCCEECSSSSSSCCS-SCCSSCCCCHHHHHHH
T ss_pred CCccCCCcCCCC-CEEEcCCCCchhccccCCCCcc-cCCCCCcCCccCcCcc
Confidence 47 999876554 9999999999999999995432 344 589999998753
No 31
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=97.53 E-value=3.9e-05 Score=61.83 Aligned_cols=52 Identities=31% Similarity=0.697 Sum_probs=38.5
Q ss_pred CCceEEe-ecCCCCCCCcceeeccccCceeeccccccCCCCCCC-CceecCCCcccccC
Q 040083 574 VNCVVEC-ACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIP-HIFLCNRCEQEIVH 630 (635)
Q Consensus 574 e~~~VrC-iCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~~~vP-~~y~C~~C~~~~~~ 630 (635)
+.+...| +|+. .| .||.||.|..++|..|++.+-. .+| ..|+|+.|..+...
T Consensus 6 d~~~~~C~vC~~---~g-~ll~Cd~C~~~fH~~Cl~ppl~-~~p~g~W~C~~C~~~~~k 59 (61)
T 1mm2_A 6 DHHMEFCRVCKD---GG-ELLCCDTCPSSYHIHCLNPPLP-EIPNGEWLCPRCTCPALK 59 (61)
T ss_dssp CSSCSSCTTTCC---CS-SCBCCSSSCCCBCSSSSSSCCS-SCCSSCCCCTTTTTTCCT
T ss_pred cCCCCcCCCCCC---CC-CEEEcCCCCHHHcccccCCCcC-cCCCCccCChhhcCchhc
Confidence 3444457 6873 34 7999999999999999996432 333 58999999876543
No 32
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.52 E-value=2.7e-05 Score=61.58 Aligned_cols=48 Identities=29% Similarity=0.760 Sum_probs=36.1
Q ss_pred CCceEEe-ecCCCCCCCcceeeccccCceeeccccccCCCCCCC-CceecCCCcc
Q 040083 574 VNCVVEC-ACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIP-HIFLCNRCEQ 626 (635)
Q Consensus 574 e~~~VrC-iCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~~~vP-~~y~C~~C~~ 626 (635)
+.+...| +|+.. | .||.||.|..|+|..|++.+-. .+| ..|+|+.|..
T Consensus 6 ~~~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~-~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLK-TIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCC-SCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcC-CCCCCceEChhhhC
Confidence 4445557 78863 4 7999999999999999995432 233 6899999964
No 33
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=97.51 E-value=7.8e-05 Score=72.21 Aligned_cols=54 Identities=22% Similarity=0.407 Sum_probs=39.3
Q ss_pred CceEEeecCCCCCCCcceeeccccCceeeccccccCCCCCCC-C---ceecCCCcccc
Q 040083 575 NCVVECACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIP-H---IFLCNRCEQEI 628 (635)
Q Consensus 575 ~~~VrCiCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~~~vP-~---~y~C~~C~~~~ 628 (635)
.....|-||...+-+..|++|+.|..|+|.+|++.....-+| + .|.|..|.+..
T Consensus 3 ~~~~yCYCG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~~g 60 (177)
T 3rsn_A 3 TQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSG 60 (177)
T ss_dssp --------CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTSTTS
T ss_pred CeeeEEEcCCCCCCCceeEeeccccceecHHHhcccccCccccceeEEEEccccCCCC
Confidence 345689999988888999999999999999999987655555 2 48899998865
No 34
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=97.50 E-value=1.9e-05 Score=63.86 Aligned_cols=53 Identities=23% Similarity=0.467 Sum_probs=38.8
Q ss_pred eEEe-ecCCCC-CCCcceeeccccCceeeccccccCCCCC---CCCceecCCCccccc
Q 040083 577 VVEC-ACGADE-DDGERMVSCDICEVWQHTRCARIPNNEE---IPHIFLCNRCEQEIV 629 (635)
Q Consensus 577 ~VrC-iCG~~d-DDGe~MI~CD~C~vWQH~~CvgI~~~~~---vP~~y~C~~C~~~~~ 629 (635)
...| +|+..+ +++..||.||.|..++|..|++++-... ....|+|+.|.....
T Consensus 6 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 6 SGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 3446 999763 2334999999999999999999853221 235799999987653
No 35
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=97.43 E-value=4.4e-05 Score=62.28 Aligned_cols=51 Identities=33% Similarity=0.669 Sum_probs=38.3
Q ss_pred ceEEe-ecCCCCCCCcceeeccccCceeeccccccCCCCCCC-CceecCCCcccccCC
Q 040083 576 CVVEC-ACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIP-HIFLCNRCEQEIVHL 631 (635)
Q Consensus 576 ~~VrC-iCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~~~vP-~~y~C~~C~~~~~~~ 631 (635)
+...| +|+. .| .||.||.|..|+|..|++.+-. .+| ..|+|+.|.......
T Consensus 7 ~~~~C~vC~~---~g-~ll~CD~C~~~fH~~Cl~ppl~-~~P~g~W~C~~C~~~~~~~ 59 (66)
T 1xwh_A 7 NEDECAVCRD---GG-ELICCDGCPRAFHLACLSPPLR-EIPSGTWRCSSCLQATVQE 59 (66)
T ss_dssp CCCSBSSSSC---CS-SCEECSSCCCEECTTTSSSCCS-SCCSSCCCCHHHHHTCCCC
T ss_pred CCCCCccCCC---CC-CEEEcCCCChhhcccccCCCcC-cCCCCCeECccccCccccc
Confidence 34457 7884 34 7999999999999999995422 233 689999998876543
No 36
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=97.38 E-value=0.00011 Score=60.97 Aligned_cols=45 Identities=27% Similarity=0.758 Sum_probs=35.2
Q ss_pred ecCCCCCCCcceeeccccCceeeccccccCCCCCCC-C-ceecCCCccc
Q 040083 581 ACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIP-H-IFLCNRCEQE 627 (635)
Q Consensus 581 iCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~~~vP-~-~y~C~~C~~~ 627 (635)
+||..++.| .||.||.|..|+|..|++.+- ..+| . .|+|+.|..+
T Consensus 23 ~C~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl-~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 23 LCGGRQDPD-KQLMCDECDMAFHIYCLDPPL-SSVPSEDEWYCPECRND 69 (70)
T ss_dssp TTCCCSCGG-GEEECTTTCCEEEGGGSSSCC-SSCCSSSCCCCTTTSCC
T ss_pred CCCCcCCCC-CEEEcCCCCCceecccCCCCc-CCCCCCCCcCCcCccCc
Confidence 678775554 999999999999999999432 2344 3 8999999764
No 37
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.36 E-value=0.00016 Score=61.19 Aligned_cols=44 Identities=27% Similarity=0.759 Sum_probs=35.1
Q ss_pred ecCCCCCCCcceeeccccCceeeccccccCCCCCCCC--ceecCCCcc
Q 040083 581 ACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIPH--IFLCNRCEQ 626 (635)
Q Consensus 581 iCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~~~vP~--~y~C~~C~~ 626 (635)
+||..++.| .||.||.|..++|..|++.+- ..+|+ .|+|+.|..
T Consensus 31 vC~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl-~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 31 VCGGKHEPN-MQLLCDECNVAYHIYCLNPPL-DKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCCCCCST-TEEECSSSCCEEETTSSSSCC-SSCCCSSCCCCTTTCC
T ss_pred CcCCcCCCC-CEEEcCCCCccccccccCCCc-cCCCCCCCcCCcCccC
Confidence 788875555 999999999999999999442 24554 799999974
No 38
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=97.29 E-value=3.4e-05 Score=66.65 Aligned_cols=49 Identities=31% Similarity=0.710 Sum_probs=38.8
Q ss_pred eEEeecCCCC-CCCcceeeccccCceeeccccccCCCCCCC-CceecCCCcccc
Q 040083 577 VVECACGADE-DDGERMVSCDICEVWQHTRCARIPNNEEIP-HIFLCNRCEQEI 628 (635)
Q Consensus 577 ~VrCiCG~~d-DDGe~MI~CD~C~vWQH~~CvgI~~~~~vP-~~y~C~~C~~~~ 628 (635)
.+-++|+..+ ++++.||.||.|..|+|..|++++. +| ..|+|+.|....
T Consensus 26 ~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~---vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 26 AVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY---IPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS---CCSSCCCCHHHHHHT
T ss_pred CcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc---cCCCceECccccCcc
Confidence 3334999764 3445999999999999999999873 44 589999998654
No 39
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=97.20 E-value=0.00019 Score=59.05 Aligned_cols=50 Identities=24% Similarity=0.603 Sum_probs=38.7
Q ss_pred Ee-ecCCCCCCCcceeeccccCceeeccccccCCCCCCC-CceecCCCcccccCCCC
Q 040083 579 EC-ACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIP-HIFLCNRCEQEIVHLSS 633 (635)
Q Consensus 579 rC-iCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~~~vP-~~y~C~~C~~~~~~~~~ 633 (635)
.| +|+ +.| .||.||.|..++|..|+...-. .+| ..|+|+.|.....+.|.
T Consensus 14 ~C~vC~---~~~-~ll~Cd~C~~~~H~~Cl~P~l~-~~P~g~W~C~~C~~~~~p~P~ 65 (66)
T 2lri_C 14 RCGVCG---DGT-DVLRCTHCAAAFHWRCHFPAGT-SRPGTGLRCRSCSGDVTPAPV 65 (66)
T ss_dssp CCTTTS---CCT-TCEECSSSCCEECHHHHCTTTC-CCCSSSCCCTTTTTCCCCCCC
T ss_pred CcCCCC---CCC-eEEECCCCCCceecccCCCccC-cCCCCCEECccccCCCccCCC
Confidence 36 787 344 6999999999999999975532 344 57999999988777663
No 40
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=97.19 E-value=8.7e-05 Score=59.32 Aligned_cols=45 Identities=31% Similarity=0.891 Sum_probs=34.6
Q ss_pred Ee-ecCCCCCCCcceeeccccCceeeccccccCCCCCCC-CceecCCCcccc
Q 040083 579 EC-ACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIP-HIFLCNRCEQEI 628 (635)
Q Consensus 579 rC-iCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~~~vP-~~y~C~~C~~~~ 628 (635)
.| +|+.. | .||.||.|..|+|..|++.+-. .+| ..|+|+.|....
T Consensus 7 ~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~-~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 7 FCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLK-TIPKGMWICPRCQDQM 53 (60)
T ss_dssp SCTTTCCC---S-SCEECSSSSCEECGGGSSSCCS-SCCCSCCCCHHHHHHH
T ss_pred CCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcC-CCCCCceEChhccChh
Confidence 36 78753 4 8999999999999999995422 233 589999997654
No 41
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=97.01 E-value=0.00041 Score=58.69 Aligned_cols=44 Identities=27% Similarity=0.748 Sum_probs=33.5
Q ss_pred ecCCCCCCCcceeeccccCceeeccccccCCCCCCCC-c-eecCCCcc
Q 040083 581 ACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIPH-I-FLCNRCEQ 626 (635)
Q Consensus 581 iCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~~~vP~-~-y~C~~C~~ 626 (635)
+|+..++.+ .||.||.|..++|..|++.+-. .+|+ . |+|+.|..
T Consensus 31 vC~~~~d~~-~ll~CD~C~~~yH~~Cl~PpL~-~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 31 LCGGRQDPD-KQLMCDECDMAFHIYCLDPPLS-SVPSEDEWYCPECRN 76 (77)
T ss_dssp TTCCCSCGG-GEEECTTTCCEEETTTSSSCCS-SCCSSSCCCCTTTC-
T ss_pred ccCCCCCCc-ceeEeCCCCCccCcccCCCccc-CCCCCCceECcCccc
Confidence 677765554 9999999999999999994422 3443 3 99999975
No 42
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=96.97 E-value=0.00034 Score=70.05 Aligned_cols=47 Identities=28% Similarity=0.803 Sum_probs=32.9
Q ss_pred Ee-ecCCCCCCCcceeeccccCceeeccccccCCCCCCCC--ceecCCCccc
Q 040083 579 EC-ACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIPH--IFLCNRCEQE 627 (635)
Q Consensus 579 rC-iCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~~~vP~--~y~C~~C~~~ 627 (635)
.| +||..++.| .|+.||.|..++|..|++.+- ..+|+ .|+|+.|...
T Consensus 176 ~C~vC~~~~~~~-~lL~CD~C~~~yH~~CL~PPL-~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 176 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPL-SSVPSEDEWYCPECRND 225 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCC-CSCCSSSCCCCGGGC--
T ss_pred CCcCCCCCCCCC-CeEEcCCCCcceeCccCCCCc-ccCCCCCCCCCcCCcCc
Confidence 35 788875554 999999999999999999542 24554 6999999753
No 43
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=96.88 E-value=0.00075 Score=60.10 Aligned_cols=46 Identities=24% Similarity=0.730 Sum_probs=35.0
Q ss_pred ecCCCCCCCcceeeccccCceeeccccccCCCCCCC-CceecCCCccc
Q 040083 581 ACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIP-HIFLCNRCEQE 627 (635)
Q Consensus 581 iCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~~~vP-~~y~C~~C~~~ 627 (635)
+||...++.+.|+.||.|..++|..|...+-. .+| ..|+|+.|+++
T Consensus 66 vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~-~~P~~~W~C~~C~~k 112 (112)
T 3v43_A 66 SCRDQGKNADNMLFCDSCDRGFHMECCDPPLT-RMPKGMWICQICRPR 112 (112)
T ss_dssp TTCCCCCTTCCCEECTTTCCEECGGGCSSCCS-SCCSSCCCCTTTSCC
T ss_pred cccCcCCCccceEEcCCCCCeeecccCCCCCC-CCCCCCeECCCCCCc
Confidence 67765444458999999999999999964422 344 47999999864
No 44
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=96.86 E-value=0.00048 Score=67.12 Aligned_cols=44 Identities=23% Similarity=0.593 Sum_probs=34.2
Q ss_pred e-ecCCCCCCCcceeeccccCceeeccccccCCCCCCC-CceecCCCcccc
Q 040083 580 C-ACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIP-HIFLCNRCEQEI 628 (635)
Q Consensus 580 C-iCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~~~vP-~~y~C~~C~~~~ 628 (635)
| +|+. .| .|+.||.|..|+|..|.+.+-. .+| ..|+|+.|....
T Consensus 10 C~~C~~---~g-~ll~Cd~C~~~~H~~Cl~p~l~-~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 10 CAVCQN---GG-DLLCCEKCPKVFHLTCHVPTLL-SFPSGDWICTFCRDIG 55 (207)
T ss_dssp BTTTCC---CE-EEEECSSSSCEECTTTSSSCCS-SCCSSCCCCTTTSCSS
T ss_pred CCCCCC---CC-ceEEcCCCCCccCCccCCCCCC-CCCCCCEEeCceeCcc
Confidence 6 7873 34 6999999999999999975432 233 579999999765
No 45
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=96.74 E-value=0.00083 Score=59.60 Aligned_cols=44 Identities=30% Similarity=0.691 Sum_probs=33.3
Q ss_pred CCCCcceeeccccCceeeccccccCCC----CCCCCceecCCCccccc
Q 040083 586 EDDGERMVSCDICEVWQHTRCARIPNN----EEIPHIFLCNRCEQEIV 629 (635)
Q Consensus 586 dDDGe~MI~CD~C~vWQH~~CvgI~~~----~~vP~~y~C~~C~~~~~ 629 (635)
.+.++.|++|+.|+.|+|..|.++... .+.++.|.|+.|.+...
T Consensus 69 ~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~~~ 116 (117)
T 4bbq_A 69 QDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQEDS 116 (117)
T ss_dssp CCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC----
T ss_pred cccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCCCC
Confidence 344558999999999999999998752 35678899999988653
No 46
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=96.59 E-value=0.0008 Score=60.29 Aligned_cols=45 Identities=27% Similarity=0.522 Sum_probs=32.7
Q ss_pred CceEEe-ecCCCCCCCcceeecc--ccCceeeccccccCCCCCCCCceecCCCc
Q 040083 575 NCVVEC-ACGADEDDGERMVSCD--ICEVWQHTRCARIPNNEEIPHIFLCNRCE 625 (635)
Q Consensus 575 ~~~VrC-iCG~~dDDGe~MI~CD--~C~vWQH~~CvgI~~~~~vP~~y~C~~C~ 625 (635)
.....| +|+ +.| .||.|| .|..|+|..|+++...+ ...|+|+.|.
T Consensus 13 ~~~~~C~~C~---~~G-~ll~CD~~~Cp~~fH~~Cl~L~~~P--~g~W~Cp~c~ 60 (107)
T 4gne_A 13 MHEDYCFQCG---DGG-ELVMCDKKDCPKAYHLLCLNLTQPP--YGKWECPWHQ 60 (107)
T ss_dssp SSCSSCTTTC---CCS-EEEECCSTTCCCEECTGGGTCSSCC--SSCCCCGGGB
T ss_pred CCCCCCCcCC---CCC-cEeEECCCCCCcccccccCcCCcCC--CCCEECCCCC
Confidence 344458 466 345 899999 89999999999976421 2578888664
No 47
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=96.56 E-value=0.00091 Score=59.83 Aligned_cols=47 Identities=32% Similarity=0.731 Sum_probs=36.9
Q ss_pred Ee-ecCCCCCCCcceeeccccCceeeccccccCCCCCCC-CceecCCCccc
Q 040083 579 EC-ACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIP-HIFLCNRCEQE 627 (635)
Q Consensus 579 rC-iCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~~~vP-~~y~C~~C~~~ 627 (635)
.| +||..++++ .|+.||.|..++|..|++.+- ..+| ..|+|+.|...
T Consensus 60 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl-~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 60 SCILCGTSENDD-QLLFCDDCDRGYHMYCLNPPV-AEPPEGSWSCHLCWEL 108 (114)
T ss_dssp CCTTTTCCTTTT-TEEECSSSCCEEETTTSSSCC-SSCCSSCCCCHHHHHH
T ss_pred ccCcccccCCCC-ceEEcCCCCccccccccCCCc-cCCCCCCeECccccch
Confidence 35 788876666 999999999999999999542 2344 58999999754
No 48
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=96.31 E-value=0.0014 Score=56.49 Aligned_cols=53 Identities=23% Similarity=0.658 Sum_probs=39.0
Q ss_pred eEEe-ecCCCCCC-CcceeeccccCceeeccccccCCCC---CCC-CceecCCCccccc
Q 040083 577 VVEC-ACGADEDD-GERMVSCDICEVWQHTRCARIPNNE---EIP-HIFLCNRCEQEIV 629 (635)
Q Consensus 577 ~VrC-iCG~~dDD-Ge~MI~CD~C~vWQH~~CvgI~~~~---~vP-~~y~C~~C~~~~~ 629 (635)
...| +|+..++. +..||.||.|...+|..|.+.+-.. .+| ..|+|..|.....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 3446 89986542 2489999999999999999865321 133 5799999987653
No 49
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=96.12 E-value=0.003 Score=55.70 Aligned_cols=48 Identities=29% Similarity=0.703 Sum_probs=37.1
Q ss_pred Ee-ecCCCCCCCcceeeccccCceeeccccccCCCCCCC-CceecCCCcccc
Q 040083 579 EC-ACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIP-HIFLCNRCEQEI 628 (635)
Q Consensus 579 rC-iCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~~~vP-~~y~C~~C~~~~ 628 (635)
.| +|+...++. .|+.||.|..++|..|+..+-. .+| ..|+|+.|....
T Consensus 56 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~-~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 56 VCQNCKQSGEDS-KMLVCDTCDKGYHTFCLQPVMK-SVPTNGWKCKNCRICI 105 (111)
T ss_dssp CCTTTCCCSCCT-TEEECSSSCCEEEGGGSSSCCS-SCCSSCCCCHHHHCCS
T ss_pred cccccCccCCCC-CeeECCCCCcHHhHHhcCCccc-cCCCCCcCCcCCcCcC
Confidence 35 688876654 8999999999999999985432 344 589999997654
No 50
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=94.91 E-value=0.018 Score=50.81 Aligned_cols=46 Identities=22% Similarity=0.473 Sum_probs=34.8
Q ss_pred Ee-ecCCCCCCCcceeeccccCceeeccccccCCCCCCCCceecCCCc
Q 040083 579 EC-ACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIPHIFLCNRCE 625 (635)
Q Consensus 579 rC-iCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~~~vP~~y~C~~C~ 625 (635)
.| +|+...+. +.||.|+.|...+|..|+++.........|+|+.|.
T Consensus 9 ~C~~C~~~g~~-~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 9 NCAVCDSPGDL-LDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CBTTTCCCCCT-TTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCcCCCCCCCC-cCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 36 88876544 479999999999999999987532223578888774
No 51
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=93.89 E-value=0.052 Score=47.13 Aligned_cols=47 Identities=26% Similarity=0.632 Sum_probs=34.9
Q ss_pred eEEe-ecCCCCCCCcceeeccccCceeeccccccCCCCCCC-CceecCCCcccc
Q 040083 577 VVEC-ACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIP-HIFLCNRCEQEI 628 (635)
Q Consensus 577 ~VrC-iCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~~~vP-~~y~C~~C~~~~ 628 (635)
...| +||.. | .|+.||.|..-+|..|...+-. .+| ..|+|+.|....
T Consensus 25 ~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~-~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 25 ATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQ-DVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCC-CCCSSSCCCCSCCCCC
T ss_pred CCcCcCcCCC---C-CEEECCCCCCceecccCCCCCC-CCcCCCcCCccccCCC
Confidence 3357 78743 4 6999999999999999954322 333 589999998654
No 52
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=89.94 E-value=0.052 Score=48.20 Aligned_cols=39 Identities=21% Similarity=0.554 Sum_probs=28.0
Q ss_pred CCCcceeeccccCceeeccccccCCC--CCC-CCceecCCCc
Q 040083 587 DDGERMVSCDICEVWQHTRCARIPNN--EEI-PHIFLCNRCE 625 (635)
Q Consensus 587 DDGe~MI~CD~C~vWQH~~CvgI~~~--~~v-P~~y~C~~C~ 625 (635)
.+++.||.|+.|...+|..|+++... ..+ ...|+|+.|.
T Consensus 21 g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 21 KKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp SCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 34569999999999999999987421 011 3467777774
No 53
>2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp}
Probab=88.04 E-value=0.18 Score=44.96 Aligned_cols=41 Identities=10% Similarity=0.027 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhhhhceeeecccccccCCCceeeeeeeeCceEEEecc
Q 040083 508 LKLEVQRNFRELYWGLRSFVIESIVNVNATGTDLVCGFVEVGRRIVFEGS 557 (635)
Q Consensus 508 LK~ea~rafrdtY~~~~~f~ve~l~~~~~~~~~~~~g~v~sg~~v~V~G~ 557 (635)
-|+||.+...|+|+.| |+.+..++++..+ +.++.++.++|+
T Consensus 69 ~kE~vaKIVDDtYRKM---qvSgAtDLASk~q------~~sd~s~k~k~E 109 (110)
T 2rno_A 69 TKEAVAKIVDDTYRKM---QIQCAPDLATRSH------SGSDFSFRPIEE 109 (110)
T ss_dssp SHHHHHHHHHHHHHHH---HCTTCCCSCTTCS------SCSSSCSCCCTT
T ss_pred cHHHHHHHHHHHHHHH---hccCCccccccCc------cccCcccccCCC
Confidence 3889999999999999 9999999998877 566666666664
No 54
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=82.56 E-value=0.2 Score=44.58 Aligned_cols=38 Identities=29% Similarity=0.583 Sum_probs=27.2
Q ss_pred CCCcceeeccccCceeeccccccCCC--CCCC-CceecCCC
Q 040083 587 DDGERMVSCDICEVWQHTRCARIPNN--EEIP-HIFLCNRC 624 (635)
Q Consensus 587 DDGe~MI~CD~C~vWQH~~CvgI~~~--~~vP-~~y~C~~C 624 (635)
.+++.||.|+.|...+|..|+++... ..++ ..|.|+.|
T Consensus 18 g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C 58 (114)
T 2kwj_A 18 GRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIEC 58 (114)
T ss_dssp CCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGG
T ss_pred CCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCcccc
Confidence 45569999999999999999997621 0122 35766655
No 55
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=81.96 E-value=0.44 Score=44.64 Aligned_cols=51 Identities=20% Similarity=0.502 Sum_probs=36.9
Q ss_pred CCceEEe-ecCCCCCCCcceeeccccCceeeccccccCCCC-------CCCCceecCCCcccc
Q 040083 574 VNCVVEC-ACGADEDDGERMVSCDICEVWQHTRCARIPNNE-------EIPHIFLCNRCEQEI 628 (635)
Q Consensus 574 e~~~VrC-iCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~~-------~vP~~y~C~~C~~~~ 628 (635)
+...-+| +|+ +.| -++.||.|-.=+|..|+..+-.+ ...+.|.|+.|.++.
T Consensus 60 Dg~~d~C~vC~---~GG-~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~p 118 (142)
T 2lbm_A 60 DGMDEQCRWCA---EGG-NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEP 118 (142)
T ss_dssp TSCBCSCSSSC---CCS-SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCCT
T ss_pred CCCCCeecccC---CCC-cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCcc
Confidence 4444456 565 455 78999999999999999854321 124789999998764
No 56
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=80.26 E-value=0.34 Score=44.75 Aligned_cols=52 Identities=19% Similarity=0.489 Sum_probs=37.3
Q ss_pred CCceEEe-ecCCCCCCCcceeeccccCceeeccccccCCC-------CCCCCceecCCCccccc
Q 040083 574 VNCVVEC-ACGADEDDGERMVSCDICEVWQHTRCARIPNN-------EEIPHIFLCNRCEQEIV 629 (635)
Q Consensus 574 e~~~VrC-iCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~-------~~vP~~y~C~~C~~~~~ 629 (635)
+...-+| +|+ |.| .++.||.|-.=+|..|+...-. ....+.|.|..|.++.+
T Consensus 54 Dg~~~~C~vC~---dGG-~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~pl 113 (129)
T 3ql9_A 54 DGMDEQCRWCA---EGG-NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEPL 113 (129)
T ss_dssp TSCBSSCTTTC---CCS-EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGGG
T ss_pred CCCCCcCeecC---CCC-eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHHH
Confidence 3344447 776 345 7999999999999999985311 11247899999988754
No 57
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=78.49 E-value=2.5 Score=36.80 Aligned_cols=105 Identities=5% Similarity=0.008 Sum_probs=83.1
Q ss_pred hhhhhhHHHHhhccceeeeeeeeccccccchhhhhhhhhcCCcccccccccccCcccccCHHHHHHHHHHHhCCchhhHh
Q 040083 158 HQIMDFWDRLCSGLQARKVSLYDISRKKGMELRLLHVVAYSQSWFGHWGYKFGRGSFGVTQPMYQKAIEAIQGMPLCLLL 237 (635)
Q Consensus 158 ~~iM~~WDrlC~~L~~RkVSv~DvSkK~gmelRLLh~Va~G~sWyG~WGY~Fg~Gsfgvt~~~Y~~Aie~Lss~pL~~~~ 237 (635)
.+.|.|.+||=.....+.+|..+++++-|+.-.-+..+-.|. ...+.+...+-.++| +++++.|+
T Consensus 8 ~~~~~~g~~lk~~R~~~glsq~~lA~~~gis~~~is~~E~g~--------------~~p~~~~l~~ia~~l-~v~~~~l~ 72 (126)
T 3ivp_A 8 YDFRALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKG--------------QHPSLQVLYDLVSLL-NVSVDEFF 72 (126)
T ss_dssp CCTHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSC--------------CCCCHHHHHHHHHHH-TCCSHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCC--------------CCCCHHHHHHHHHHH-CcCHHHHh
Confidence 457889999988888899999999999999887777666653 357778877777776 57888887
Q ss_pred cccCCC--CCChhHHHHHhhcccchhhhcHHHHHHHHHhhhh
Q 040083 238 NHLGHL--NPDIPLIFTRYQTLSDHFLATLGDLFHFLLDLKS 277 (635)
Q Consensus 238 ~~~~~~--~~~l~~ii~~Yq~lS~~~L~Tl~dL~~fmL~l~~ 277 (635)
..-... ......++..+..+++..+..+.+++..++..+.
T Consensus 73 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~i~~~i~~l~~~~~ 114 (126)
T 3ivp_A 73 LPASSQVKSTKRRQLENKIDNFTDADLVIMESVADGIVKSKE 114 (126)
T ss_dssp SCCCCCCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccchHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 644332 2356788899999999999999999999987664
No 58
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=71.83 E-value=1.7 Score=38.62 Aligned_cols=33 Identities=21% Similarity=0.514 Sum_probs=25.7
Q ss_pred cceeeccccCceeeccccccCCCCCCCCceecCC
Q 040083 590 ERMVSCDICEVWQHTRCARIPNNEEIPHIFLCNR 623 (635)
Q Consensus 590 e~MI~CD~C~vWQH~~CvgI~~~~~vP~~y~C~~ 623 (635)
+.+||||.|..|--.. .++......|+.|+|..
T Consensus 26 ~~WVQCD~C~KWRrLP-~~~~~~~~~pd~W~C~m 58 (100)
T 2l7p_A 26 SAWVRCDDCFKWRRIP-ASVVGSIDESSRWICMN 58 (100)
T ss_dssp SEEEECTTTCCEEEEC-HHHHTTSTTSSCCCGGG
T ss_pred CeEEeeCCCCccccCC-hhHccccCCCCCceeCC
Confidence 4899999999999886 44443345689999976
No 59
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=71.70 E-value=1.2 Score=38.24 Aligned_cols=41 Identities=20% Similarity=0.405 Sum_probs=30.8
Q ss_pred cccccccCCCCceEEeecCCCC-------CCCcceeeccccCceeecc
Q 040083 565 YGQIYENGMVNCVVECACGADE-------DDGERMVSCDICEVWQHTR 605 (635)
Q Consensus 565 ~~~r~e~g~e~~~VrCiCG~~d-------DDGe~MI~CD~C~vWQH~~ 605 (635)
.++.++.+.+.|.-.|.||... .+|+..++|+.|..|-...
T Consensus 11 eDm~~de~~~~y~ypCrCGd~F~it~edL~~ge~iv~C~sCSL~I~V~ 58 (83)
T 1yop_A 11 EDMTFEPENQMFTYPCPCGDRFQIYLDDMFEGEKVAVCPSCSLMIDVV 58 (83)
T ss_dssp GGSEEETTTTEEEEEETTTEEEEEEHHHHHTTCCEEECSSSCCEEECB
T ss_pred HHcEEcCCCCEEEEeCCCCCeEEECHHHHhCCCEEEECCCCccEEEEE
Confidence 3455555556788999999642 4788999999999998653
No 60
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=71.12 E-value=1.1 Score=39.13 Aligned_cols=42 Identities=19% Similarity=0.512 Sum_probs=31.8
Q ss_pred ccccccCCCCceEEeecCCCC-------CCCcceeeccccCceeecccc
Q 040083 566 GQIYENGMVNCVVECACGADE-------DDGERMVSCDICEVWQHTRCA 607 (635)
Q Consensus 566 ~~r~e~g~e~~~VrCiCG~~d-------DDGe~MI~CD~C~vWQH~~Cv 607 (635)
++.++.+.+.|.-.|.||... .+|+..++|+.|..|--..-.
T Consensus 12 Dm~~de~~~~y~ypCrCGd~F~IteedLe~ge~iv~C~sCSL~IkV~y~ 60 (89)
T 2jr7_A 12 DFQYDEDSETYFYPCPCGDNFSITKEDLENGEDVATCPSCSLIIKVIYD 60 (89)
T ss_dssp TSEEETTTTEEEEECTTSSEEEEEHHHHHHTCCEEECTTTCCEEEEECC
T ss_pred HcEEcCCCCEEEEcCCCCCEEEECHHHHhCCCEEEECCCCccEEEEEEc
Confidence 445555556788999999853 467889999999999876443
No 61
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=69.15 E-value=6.7 Score=33.34 Aligned_cols=101 Identities=9% Similarity=0.001 Sum_probs=77.1
Q ss_pred hhhHHHHhhccceeeeeeeeccccccchhhhhhhhhcCCcccccccccccCcccccCHHHHHHHHHHHhCCchhhHhccc
Q 040083 161 MDFWDRLCSGLQARKVSLYDISRKKGMELRLLHVVAYSQSWFGHWGYKFGRGSFGVTQPMYQKAIEAIQGMPLCLLLNHL 240 (635)
Q Consensus 161 M~~WDrlC~~L~~RkVSv~DvSkK~gmelRLLh~Va~G~sWyG~WGY~Fg~Gsfgvt~~~Y~~Aie~Lss~pL~~~~~~~ 240 (635)
|.|.+||=.....+.+|..|++++-|+...-+.-+-.|. -..+.+...+-.++| +++++.|+..-
T Consensus 8 ~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~--------------~~p~~~~l~~la~~l-~v~~~~l~~~~ 72 (114)
T 3op9_A 8 HQFAENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSGE--------------TKPDIEKLIRLATYF-HLSIDELVGYV 72 (114)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHTS--------------SCCCHHHHHHHHHHH-TCCHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCC--------------CCCCHHHHHHHHHHh-CCCHHHHhcCC
Confidence 468899988888899999999999999887776655543 346777777766666 68998887654
Q ss_pred CCCCC----ChhHHHHHhhcccchhhhcHHHHHHHHHhhh
Q 040083 241 GHLNP----DIPLIFTRYQTLSDHFLATLGDLFHFLLDLK 276 (635)
Q Consensus 241 ~~~~~----~l~~ii~~Yq~lS~~~L~Tl~dL~~fmL~l~ 276 (635)
..... .+..++..+..+++..+..+.+++.++..+-
T Consensus 73 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~i~~i~~~~ 112 (114)
T 3op9_A 73 QEDKVWNDLSLKQWLLSLNLRSEEEIAKIKILVDTVETLY 112 (114)
T ss_dssp CC--CCSCHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHS
T ss_pred CcccccCcHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 43322 5778888899999999999999988887653
No 62
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=68.75 E-value=1.9 Score=37.12 Aligned_cols=40 Identities=20% Similarity=0.544 Sum_probs=30.7
Q ss_pred ccccccCCCCceEEeecCCCC-------CCCcceeeccccCceeecc
Q 040083 566 GQIYENGMVNCVVECACGADE-------DDGERMVSCDICEVWQHTR 605 (635)
Q Consensus 566 ~~r~e~g~e~~~VrCiCG~~d-------DDGe~MI~CD~C~vWQH~~ 605 (635)
++.++.+...|.-.|.||... .+|+..++|+.|..|-...
T Consensus 19 Dm~~de~~~~y~y~CrCGd~F~it~edL~~ge~iv~C~sCSL~I~V~ 65 (83)
T 1wge_A 19 DFQYDEDSETYFYPCPCGDNFAITKEDLENGEDVATCPSCSLIIKVI 65 (83)
T ss_dssp GSCCBTTTTEEEECCSSSSCEEEEHHHHHTTCCEEECTTTCCEEEEE
T ss_pred HceEccCCCEEEEeCCCCCEEEECHHHHhCCCEEEECCCCceEEEEE
Confidence 445555556788889999863 4788899999999998664
No 63
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=61.35 E-value=11 Score=31.37 Aligned_cols=97 Identities=12% Similarity=0.106 Sum_probs=68.5
Q ss_pred HHHHhhccceeeeeeeeccccccchhhhhhhhhcCCcccccccccccCcccccCHHHHHHHHHHHhCCchhhHhcccCCC
Q 040083 164 WDRLCSGLQARKVSLYDISRKKGMELRLLHVVAYSQSWFGHWGYKFGRGSFGVTQPMYQKAIEAIQGMPLCLLLNHLGHL 243 (635)
Q Consensus 164 WDrlC~~L~~RkVSv~DvSkK~gmelRLLh~Va~G~sWyG~WGY~Fg~Gsfgvt~~~Y~~Aie~Lss~pL~~~~~~~~~~ 243 (635)
-++|=.....+.+|..+++++-|+.-.-+.-+-.|. ....+.+...+-.++| +++++.|+..-..+
T Consensus 3 ~~~l~~~r~~~gltq~~lA~~~gis~~~i~~~e~g~-------------~~~p~~~~l~~ia~~l-~v~~~~l~~~~~~~ 68 (111)
T 1b0n_A 3 GQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNL-------------QTNPSIQFLEKVSAVL-DVSVHTLLDEKHET 68 (111)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTC-------------CSCCCHHHHHHHHHHH-TCCHHHHHCCTTCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCC-------------CCCCCHHHHHHHHHHH-CcCHHHHhcCCCCC
Confidence 456666666678999999999999887776665540 2345666666666666 68999888644222
Q ss_pred C-------CChhHHHHHh-hcccchhhhcHHHHHHHHHh
Q 040083 244 N-------PDIPLIFTRY-QTLSDHFLATLGDLFHFLLD 274 (635)
Q Consensus 244 ~-------~~l~~ii~~Y-q~lS~~~L~Tl~dL~~fmL~ 274 (635)
. ...+.+...| +.|++.....+.+++.+|..
T Consensus 69 ~~~~~~~~~~~~~l~~~~~~~l~~e~~~~i~~~i~~l~~ 107 (111)
T 1b0n_A 69 EYDGQLDSEWEKLVRDAMTSGVSKKQFREFLDYQKWRKS 107 (111)
T ss_dssp -----CCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 1 1345566888 99999999888888888765
No 64
>2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal rearrangement, DNA-binding, nucleus, phosphorylation, proto oncogene; NMR {Homo sapiens}
Probab=54.88 E-value=4.3 Score=37.35 Aligned_cols=80 Identities=23% Similarity=0.271 Sum_probs=52.0
Q ss_pred ccccccchhhhhhhhhcCCccccc---------ccccccCcccccCHHHHHHHHHHHhCCchhhHhcccCCCCCChhHHH
Q 040083 181 ISRKKGMELRLLHVVAYSQSWFGH---------WGYKFGRGSFGVTQPMYQKAIEAIQGMPLCLLLNHLGHLNPDIPLIF 251 (635)
Q Consensus 181 vSkK~gmelRLLh~Va~G~sWyG~---------WGY~Fg~Gsfgvt~~~Y~~Aie~Lss~pL~~~~~~~~~~~~~l~~ii 251 (635)
||+..-.+|++||-|.||.+=-.. =||.|.. ..+.|+++.|.|..+....|.. +-+|+
T Consensus 21 i~k~k~d~Lk~LH~ilfgr~Gk~~~~KknI~~FsGF~~~~-----~~~~~~k~~e~l~K~~~~~L~~--------~c~iL 87 (131)
T 2jx3_A 21 LSKKKTDELRNLHKLLYNRPGTVSSLKKNVGQFSGFPFEK-----GSVQYKKKEEMLKKFRNAMLKS--------ICEVL 87 (131)
T ss_dssp HHTCCHHHHHHHHHHTSSSCCCSHHHHHHHHTSSCSSCCC-----SSHHHHHHHHHHHHHHHHHHHH--------HHHTT
T ss_pred HcccCHHHHHHHHHHHcCCCChHhHHHHHHHhcCCCCCCc-----cHHHHHHHHHHHHccCHHHHHH--------HHHHH
Confidence 455555689999999998753111 2555544 4478999999999999888866 55555
Q ss_pred HHhhcccchhhhcHHHHHHHHHhhhhcC
Q 040083 252 TRYQTLSDHFLATLGDLFHFLLDLKSRL 279 (635)
Q Consensus 252 ~~Yq~lS~~~L~Tl~dL~~fmL~l~~~~ 279 (635)
..=++-+ -.||..-+|++...+
T Consensus 88 ~l~~~g~------keelv~ril~FL~~P 109 (131)
T 2jx3_A 88 DLERSGV------NSELVKRILNFLMHP 109 (131)
T ss_dssp TCCSCSC------HHHHHHHHHHTTTSC
T ss_pred CCCCCCc------HHHHHHHHHHHHhCc
Confidence 4434333 345555556555433
No 65
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=51.08 E-value=9.4 Score=33.68 Aligned_cols=21 Identities=38% Similarity=0.458 Sum_probs=18.9
Q ss_pred EeecCCCChHHHHHHHHHHHH
Q 040083 497 VTIKNNATFDELKLEVQRNFR 517 (635)
Q Consensus 497 v~lp~~ATv~dLK~ea~rafr 517 (635)
|.|++++||.|||...+..+.
T Consensus 22 v~V~~~~TV~dLK~~I~~~~~ 42 (105)
T 1v2y_A 22 VVVVQNATVLDLKKAIQRYVQ 42 (105)
T ss_dssp EEECTTCBHHHHHHHHHHHHH
T ss_pred EEECCCChHHHHHHHHHHHhC
Confidence 678999999999999999874
No 66
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=49.24 E-value=16 Score=30.25 Aligned_cols=32 Identities=22% Similarity=0.574 Sum_probs=23.6
Q ss_pred cceeecc--ccCceeeccccccCCCCCCCCceecCC
Q 040083 590 ERMVSCD--ICEVWQHTRCARIPNNEEIPHIFLCNR 623 (635)
Q Consensus 590 e~MI~CD--~C~vWQH~~CvgI~~~~~vP~~y~C~~ 623 (635)
..+|||| .|..|--.. .++. ...+|+.|+|..
T Consensus 16 ~~WVQCd~p~C~KWR~LP-~~~~-~~~lpd~W~C~m 49 (69)
T 2e61_A 16 LVWVQCSFPNCGKWRRLC-GNID-PSVLPDNWSCDQ 49 (69)
T ss_dssp CCEEECSSTTTCCEEECC-SSCC-TTTSCTTCCGGG
T ss_pred CeEEEeCccccCcccCCc-cccc-cccCCCcCEeCC
Confidence 3799999 999998763 2232 235789999975
No 67
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=49.17 E-value=27 Score=30.46 Aligned_cols=62 Identities=15% Similarity=0.124 Sum_probs=48.9
Q ss_pred cchHHHHHHHHHHHHHHHhhc----C-CcccHHHHHHHHhcccCCcchHHHHHHhc--CCccc-cccEEEE
Q 040083 301 WSAKRVEMATRVIVESLKRAE----S-RWVSRQEVRDVARSYVGDTGLLDFVLKSL--GNHIV-GKYLVRR 363 (635)
Q Consensus 301 Ws~~r~~~a~~~~v~vLr~~~----~-~wvsr~~LR~aar~~IgdtgLLD~~LK~l--~~~~v-g~~~vrr 363 (635)
++.+.++..++.+++.|.+-- - ..|+|.+||..+-+.+ ++.+.+.+|..| .|+++ .|..|+-
T Consensus 59 ~~~~~~~~l~~~l~~~L~~yH~~~P~~~G~~keeLr~~~~~~~-~~~~~~~ll~~l~~~g~l~~~~~~v~L 128 (135)
T 2v9v_A 59 ISTERYQAWWQAVTRALEEFHSRYPLRPGLAREELRSRYFSRL-PARVYQALLEEWSREGRLQLAANTVAL 128 (135)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHCTTSSCEEHHHHHHHHCTTS-CHHHHHHHHHHHHHTTSEEECSSEEEE
T ss_pred ecHHHHHHHHHHHHHHHHHHHHhCCCccCCCHHHHHHHhcccC-CHHHHHHHHHHHHHCCCEEecCCEEEC
Confidence 799999999999999996531 1 5899999999886655 889999999987 56654 4555554
No 68
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=48.28 E-value=5.9 Score=33.82 Aligned_cols=34 Identities=24% Similarity=0.559 Sum_probs=27.7
Q ss_pred CCceEEe-ecCCCCCCCcceeeccc--cCceeecccccc
Q 040083 574 VNCVVEC-ACGADEDDGERMVSCDI--CEVWQHTRCARI 609 (635)
Q Consensus 574 e~~~VrC-iCG~~dDDGe~MI~CD~--C~vWQH~~CvgI 609 (635)
+.|...| +|+.+ ..| .-|+|.. |...+|..|...
T Consensus 14 ~R~~l~C~iC~~~-~~G-AciqC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 14 ARWKLTCYLCKQK-GVG-ASIQCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CCCCCCBTTTTBC-CSS-CEEECSCTTTCCEEEHHHHHH
T ss_pred HHhcCCCcCCCCC-CCc-EeEecCCCCCCCcCcHHHHHH
Confidence 5688889 99865 346 8999986 999999999754
No 69
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=40.71 E-value=5.9 Score=27.33 Aligned_cols=13 Identities=23% Similarity=0.636 Sum_probs=9.3
Q ss_pred ccCCCCCcceEec
Q 040083 70 SMDHQCKHCRYVG 82 (635)
Q Consensus 70 s~~~~Cd~Cr~vG 82 (635)
+.+|||+.|-+.|
T Consensus 1 ~~RpYCe~CE~FG 13 (26)
T 2hqh_E 1 GSRPYCEICEMFG 13 (26)
T ss_dssp ---CEETTTTEES
T ss_pred CCCccchHHHHhC
Confidence 4689999999988
No 70
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=36.64 E-value=27 Score=28.77 Aligned_cols=87 Identities=11% Similarity=0.201 Sum_probs=62.2
Q ss_pred hHHHHhhccceeeeeeeeccccccchhhh----hhhhhcCCcccccccccccCcccccCHHHHHHHHHHHhCCchhhHhc
Q 040083 163 FWDRLCSGLQARKVSLYDISRKKGMELRL----LHVVAYSQSWFGHWGYKFGRGSFGVTQPMYQKAIEAIQGMPLCLLLN 238 (635)
Q Consensus 163 ~WDrlC~~L~~RkVSv~DvSkK~gmelRL----Lh~Va~G~sWyG~WGY~Fg~Gsfgvt~~~Y~~Aie~Lss~pL~~~~~ 238 (635)
|-+||-.....+.+|..|++++-|+...- +..+-.| --..+.+...+-.++| +++++.|+.
T Consensus 2 ~g~~lk~~R~~~glsq~~lA~~~gis~~~~~~~is~~E~g--------------~~~p~~~~l~~la~~l-~v~~~~l~~ 66 (98)
T 3lfp_A 2 LIRRLKDARLRAGISQEKLGVLAGIDEASASARMNQYEKG--------------KHAPDFEMANRLAKVL-KIPVSYLYT 66 (98)
T ss_dssp CHHHHHHHHHHHTCCHHHHHHHTTCCHHHHHHHHHHHHHT--------------SSCCCHHHHHHHHHHH-TSCGGGGGC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCcchhhhHHHHHHCC--------------CCCCCHHHHHHHHHHH-CcCHHHHhC
Confidence 34566555666789999999999988765 5554444 3346777777666666 588888865
Q ss_pred ccCCCCCChhHHHHHhhcccchhhhcHHHHH
Q 040083 239 HLGHLNPDIPLIFTRYQTLSDHFLATLGDLF 269 (635)
Q Consensus 239 ~~~~~~~~l~~ii~~Yq~lS~~~L~Tl~dL~ 269 (635)
.......++..|+.|++.....+ +++
T Consensus 67 ----~~~~~~~~~~~~~~l~~~~~~~~-~~l 92 (98)
T 3lfp_A 67 ----PEDDLAQIILTWNELNEQERKRI-NFY 92 (98)
T ss_dssp ----CCHHHHHHHHHHTTCCHHHHHHH-HHH
T ss_pred ----CChhHHHHHHHHHhCCHHHHHHH-HHH
Confidence 34567899999999999877766 443
No 71
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=34.43 E-value=44 Score=28.79 Aligned_cols=51 Identities=22% Similarity=0.482 Sum_probs=36.9
Q ss_pred eEEeecCCCC----CCC-cceeeccccCc-eeeccccccCCCCCCCCceecCCCcccccC
Q 040083 577 VVECACGADE----DDG-ERMVSCDICEV-WQHTRCARIPNNEEIPHIFLCNRCEQEIVH 630 (635)
Q Consensus 577 ~VrCiCG~~d----DDG-e~MI~CD~C~v-WQH~~CvgI~~~~~vP~~y~C~~C~~~~~~ 630 (635)
...|.|..-- ++| =.||-|..|.. =-|..|..+. ..++.|.|..|..-..+
T Consensus 26 A~~Clc~~GR~~~~~~~~W~L~lC~~Cgs~gtH~~Cs~l~---~~~~~weC~~C~~v~~~ 82 (85)
T 1weq_A 26 APICLYEQGRDSFEDEGRWRLILCATCGSHGTHRDCSSLR---PNSKKWECNECLPASGP 82 (85)
T ss_dssp CSCCCSTTCSSCCBSSSTTBCEECSSSCCCEECSGGGTCC---TTCSCCCCTTTSCCSSC
T ss_pred ccccCCCCCcccccCCCCEEEEeCcccCCchhHHHHhCCc---CCCCCEECCcCccccCC
Confidence 3458885522 233 27899999964 8999999985 35789999999975543
No 72
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=33.28 E-value=24 Score=25.89 Aligned_cols=45 Identities=24% Similarity=0.426 Sum_probs=31.8
Q ss_pred e-ecCCCCCCCcceeeccccCceeeccccccCCCCCCCCceecCCCcccc
Q 040083 580 C-ACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIPHIFLCNRCEQEI 628 (635)
Q Consensus 580 C-iCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~~~vP~~y~C~~C~~~~ 628 (635)
| ||-....+|+..+....|+-.+|..|+.--- .....||.|+...
T Consensus 8 C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~----~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWL----GSHSTCPLCRLTV 53 (55)
T ss_dssp CTTTCCCCCTTSCCEECSSSCCEECTTHHHHTT----TTCCSCSSSCCCS
T ss_pred CccCCccccCCCceEECCCCCCcccHHHHHHHH----HcCCcCcCCCCEe
Confidence 5 8877766765556666799999999986432 2245799998653
No 73
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=29.83 E-value=21 Score=31.08 Aligned_cols=51 Identities=22% Similarity=0.518 Sum_probs=36.2
Q ss_pred Ee-ecCCCCCCCcceeeccccCceeeccccccC---CCC---------CCCCceecCCCcccccCC
Q 040083 579 EC-ACGADEDDGERMVSCDICEVWQHTRCARIP---NNE---------EIPHIFLCNRCEQEIVHL 631 (635)
Q Consensus 579 rC-iCG~~dDDGe~MI~CD~C~vWQH~~CvgI~---~~~---------~vP~~y~C~~C~~~~~~~ 631 (635)
-| +|..-. . +.++.|..|..-+|..|..-. ..+ ..-.-|.|+.|..-..-+
T Consensus 17 ~C~VC~~~t-~-~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL~lLL 80 (89)
T 1wil_A 17 MCDVCEVWT-A-ESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNINLLL 80 (89)
T ss_dssp CCTTTCCCC-S-SCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCCCSSS
T ss_pred ccCcccccc-c-cceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchhhhhc
Confidence 36 788643 3 389999999999999998643 111 123459999998776544
No 74
>1r7c_A Genome polyprotein; membrane anchor domain, HCV NS5A protein, structure, peptide, membrane protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 1r7d_A 1r7e_A 1r7f_A 1r7g_A
Probab=29.69 E-value=18 Score=25.90 Aligned_cols=17 Identities=35% Similarity=0.876 Sum_probs=13.5
Q ss_pred cchhhhhhHHHHhhccc
Q 040083 156 TGHQIMDFWDRLCSGLQ 172 (635)
Q Consensus 156 sG~~iM~~WDrlC~~L~ 172 (635)
+|.=|-++||.+|+.|-
T Consensus 1 ~~swL~~iwdWvctvLs 17 (31)
T 1r7c_A 1 SGSWLRDIWDWICEVLS 17 (31)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 35667899999998773
No 75
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=29.54 E-value=34 Score=26.38 Aligned_cols=20 Identities=15% Similarity=0.338 Sum_probs=17.0
Q ss_pred EeecCCCChHHHHHHHHHHH
Q 040083 497 VTIKNNATFDELKLEVQRNF 516 (635)
Q Consensus 497 v~lp~~ATv~dLK~ea~raf 516 (635)
+-+++++||+|||...++..
T Consensus 15 i~v~~~~tv~~lK~~i~~~~ 34 (76)
T 3a9j_A 15 LEVEPSDTIENVKAKIQDKE 34 (76)
T ss_dssp EECCTTCBHHHHHHHHHHHH
T ss_pred EEECCCCcHHHHHHHHHHHH
Confidence 56789999999999988754
No 76
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=27.84 E-value=17 Score=33.33 Aligned_cols=32 Identities=28% Similarity=0.692 Sum_probs=24.0
Q ss_pred CCCCceEEeecCCCC----C---CCcceeeccccCceeec
Q 040083 572 GMVNCVVECACGADE----D---DGERMVSCDICEVWQHT 604 (635)
Q Consensus 572 g~e~~~VrCiCG~~d----D---DGe~MI~CD~C~vWQH~ 604 (635)
+...+...|.||... + +| ..|.|+.|..|...
T Consensus 107 ~~~~f~~~CrCG~~f~i~~~~l~~~-~~v~C~sCSl~~~v 145 (155)
T 2l6l_A 107 GDHSFYLSCRCGGKYSVSKDEAEEV-SLISCDTCSLIIEL 145 (155)
T ss_dssp TTTEEEEECSSSCEEEEETTHHHHC-CEEECSSSSCEEEE
T ss_pred CCcEEEEcCCCCCeEEecHHHhCCC-CEEECCCCceEEEE
Confidence 346788999999742 2 23 68999999999754
No 77
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=27.48 E-value=20 Score=30.60 Aligned_cols=32 Identities=25% Similarity=0.579 Sum_probs=26.6
Q ss_pred EEe-ecCCCCCCCcceeeccccCceeeccccccCC
Q 040083 578 VEC-ACGADEDDGERMVSCDICEVWQHTRCARIPN 611 (635)
Q Consensus 578 VrC-iCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~ 611 (635)
..| .|+.. ..| ++..|+.|+.-.|..|+..++
T Consensus 48 ~~C~~C~~~-~~~-~~Y~C~~C~f~lH~~Ca~~p~ 80 (89)
T 1v5n_A 48 YTCDKCEEE-GTI-WSYHCDECDFDLHAKCALNED 80 (89)
T ss_dssp CCCTTTSCC-CCS-CEEECTTTCCCCCHHHHHCSS
T ss_pred eEeCCCCCc-CCC-cEEEcCCCCCeEcHHhcCCCC
Confidence 457 78865 456 899999999999999998775
No 78
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=27.19 E-value=41 Score=26.59 Aligned_cols=20 Identities=15% Similarity=0.338 Sum_probs=17.1
Q ss_pred EeecCCCChHHHHHHHHHHH
Q 040083 497 VTIKNNATFDELKLEVQRNF 516 (635)
Q Consensus 497 v~lp~~ATv~dLK~ea~raf 516 (635)
|-+++++||.|||...++..
T Consensus 18 ~~v~~~~tV~~lK~~i~~~~ 37 (85)
T 3mtn_B 18 LEVEPSDTIENVKAKIQDKE 37 (85)
T ss_dssp EEECTTCBHHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHH
Confidence 56789999999999988754
No 79
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.49 E-value=28 Score=29.19 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=19.5
Q ss_pred eecCCCChHHHHHHHHHHHHHHHh
Q 040083 498 TIKNNATFDELKLEVQRNFRELYW 521 (635)
Q Consensus 498 ~lp~~ATv~dLK~ea~rafrdtY~ 521 (635)
-+++++||.|||...++.+..+|.
T Consensus 29 ~v~~~~TV~~lK~~I~~~~~~i~~ 52 (88)
T 2dzj_A 29 KVEPHATIAEIKNLFTKTHPQWYP 52 (88)
T ss_dssp EECSSCBHHHHHHHHHHHCSSSCT
T ss_pred EcCCCCcHHHHHHHHHHHhcCCCh
Confidence 689999999999999886554543
No 80
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=26.04 E-value=2.6e+02 Score=23.46 Aligned_cols=101 Identities=12% Similarity=0.149 Sum_probs=59.3
Q ss_pred ccCHHHHHHHHHHHhCCchhhHhcccCCCCCChhHHHHHhhcccchhhhcHHHHHHHHHhhhhcCCcccCCCCCCCCCCc
Q 040083 215 GVTQPMYQKAIEAIQGMPLCLLLNHLGHLNPDIPLIFTRYQTLSDHFLATLGDLFHFLLDLKSRLPKENCNFGSYNPGIL 294 (635)
Q Consensus 215 gvt~~~Y~~Aie~Lss~pL~~~~~~~~~~~~~l~~ii~~Yq~lS~~~L~Tl~dL~~fmL~l~~~~p~~~~~~~~~~~~~~ 294 (635)
-+|.+...+++..+.- + .+...++.++..|- ......+++.|++.++........
T Consensus 39 ~i~~~e~~~~l~~~~~-~---------~~~~~~~~l~~~~d-~~~~g~i~~~eF~~~~~~~~~~~~-------------- 93 (161)
T 3fwb_A 39 FLDYHELKVAMKALGF-E---------LPKREILDLIDEYD-SEGRHLMKYDDFYIVMGEKILKRD-------------- 93 (161)
T ss_dssp EECHHHHHHHHHHTTC-C---------CCHHHHHHHHHHHC-TTSSSCEEHHHHHHHHHHHHHTCC--------------
T ss_pred cCcHHHHHHHHHHcCC-C---------CCHHHHHHHHHHhC-cCCCCeEeHHHHHHHHHHHHhcCC--------------
Confidence 3677777777766521 1 12234666776663 334567889998888876542110
Q ss_pred ccccCCcchHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHhcccC---CcchHHHHHHhcC
Q 040083 295 VETNCRWSAKRVEMATRVIVESLKRAESRWVSRQEVRDVARSYVG---DTGLLDFVLKSLG 352 (635)
Q Consensus 295 ~~~~~rWs~~r~~~a~~~~v~vLr~~~~~wvsr~~LR~aar~~Ig---dtgLLD~~LK~l~ 352 (635)
+.++ .+.+++.+-..+...|++.+++.+.+. +| +..-++.+++.++
T Consensus 94 -------~~~~----~~~~F~~~D~d~~G~i~~~el~~~l~~-~~~~~~~~~~~~~~~~~d 142 (161)
T 3fwb_A 94 -------PLDE----IKRAFQLFDDDHTGKISIKNLRRVAKE-LGETLTDEELRAMIEEFD 142 (161)
T ss_dssp -------HHHH----HHHHHHHHCTTCSSEECHHHHHHHHHH-TTCCCCHHHHHHHHHTTC
T ss_pred -------cHHH----HHHHHHHHcCCCCCeEeHHHHHHHHHH-hCCCCCHHHHHHHHHHhC
Confidence 0111 223344443333368999999999986 45 4456777777664
No 81
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=25.12 E-value=45 Score=25.63 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=16.7
Q ss_pred EeecCCCChHHHHHHHHHHH
Q 040083 497 VTIKNNATFDELKLEVQRNF 516 (635)
Q Consensus 497 v~lp~~ATv~dLK~ea~raf 516 (635)
+-+++++||.|||...++..
T Consensus 15 ~~v~~~~tv~~lK~~i~~~~ 34 (76)
T 1ndd_A 15 IDIEPTDKVERIKERVEEKE 34 (76)
T ss_dssp EECCTTCBHHHHHHHHHHHH
T ss_pred EEECCCChHHHHHHHHHHHH
Confidence 56788999999999988753
No 82
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=25.06 E-value=3.1e+02 Score=23.83 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=42.6
Q ss_pred hhhhhhhhcCCcccccccccccCcccccCHHHHHHHHHHH-hCCchhhHhcccCCCCCChhHHHHHhhc
Q 040083 189 LRLLHVVAYSQSWFGHWGYKFGRGSFGVTQPMYQKAIEAI-QGMPLCLLLNHLGHLNPDIPLIFTRYQT 256 (635)
Q Consensus 189 lRLLh~Va~G~sWyG~WGY~Fg~Gsfgvt~~~Y~~Aie~L-ss~pL~~~~~~~~~~~~~l~~ii~~Yq~ 256 (635)
|-+=|..-.|.+|+...|-.|-.|. -.|.+...++++.+ .++....+-..+.-+...|...+..|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~gg~~~~~~-~~s~e~r~~iv~~~~~G~s~~~iA~~lgis~~TV~rw~~~~~~ 74 (149)
T 1k78_A 7 YPTPRTSRTGHGGVNQLGGVFVNGR-PLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYE 74 (149)
T ss_dssp ------------CBCTTSCBCCTTS-CCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCccccCCCCCccCCCceecCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4456777789999999997765443 36788888888775 5788888888888777788888888864
No 83
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=25.06 E-value=40 Score=27.67 Aligned_cols=21 Identities=10% Similarity=0.164 Sum_probs=17.7
Q ss_pred eEe-ecCCCChHHHHHHHHHHH
Q 040083 496 CVT-IKNNATFDELKLEVQRNF 516 (635)
Q Consensus 496 lv~-lp~~ATv~dLK~ea~raf 516 (635)
+|. |++++||.|||...+...
T Consensus 13 ~v~~l~~~~Tv~~Lk~~I~~~~ 34 (86)
T 2kzr_A 13 LLQGLSSRTRLRELQGQIAAIT 34 (86)
T ss_dssp EECSCCTTCBHHHHHHHHHHHT
T ss_pred EeeecCCCCCHHHHHHHHHHHh
Confidence 455 899999999999988764
No 84
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=24.59 E-value=7.8 Score=36.05 Aligned_cols=97 Identities=20% Similarity=0.275 Sum_probs=51.0
Q ss_pred CCCCCceEeecCCCChH-HHHHHHHHHHHHHHhhhhceeeecccccccCCCceeeeeeeeCceEEEeccccCCCcccccc
Q 040083 490 AMQPYECVTIKNNATFD-ELKLEVQRNFRELYWGLRSFVIESIVNVNATGTDLVCGFVEVGRRIVFEGSNSERGIVYGQI 568 (635)
Q Consensus 490 ~~pP~Elv~lp~~ATv~-dLK~ea~rafrdtY~~~~~f~ve~l~~~~~~~~~~~~g~v~sg~~v~V~G~~~~~d~~~~~r 568 (635)
.+|||++.+--.. |+= -+..-|...=|+--..++=| ..+ ++.. |.+. ++.+.|+|+.....++..++
T Consensus 29 ~mp~~~v~~eG~k-Tvi~Nf~dIa~~L~R~p~hv~ky~-~~E---LGt~------g~id-~~rlii~G~~~~~~i~~~L~ 96 (138)
T 1nee_A 29 EVPKAYSVIQGNR-TFIQNFREVADALNRDPQHLLKFL-LRE---LGTA------GNLE-GGRAILQGKFTHFLINERIE 96 (138)
T ss_dssp CCSCCCCCEETTE-EEESCHHHHHHHHCSSHHHHHHHH-HHH---CCSC------CCCB-TTTEEEESSCSSSHHHHHHH
T ss_pred ecCCCeEEEECCc-EEEEcHHHHHHHHCCCHHHHHHHH-HHH---hCCc------eeec-CCEEEEEeeeCHHHHHHHHH
Confidence 4899999888775 543 23333332222222222111 111 2222 2244 57799999873323322221
Q ss_pred cccCCCCceEEe-ecCCCC-----CCCcceeeccccCce
Q 040083 569 YENGMVNCVVEC-ACGADE-----DDGERMVSCDICEVW 601 (635)
Q Consensus 569 ~e~g~e~~~VrC-iCG~~d-----DDGe~MI~CD~C~vW 601 (635)
- .=..-|-| .|+.+| +++-.++.|+.|+..
T Consensus 97 ~---yI~~yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~ 132 (138)
T 1nee_A 97 D---YVNKFVICHECNRPDTRIIREGRISLLKCEACGAK 132 (138)
T ss_dssp H---HHTHHHHHTCCSSCSSCCEEETTTTEEECSTTSCC
T ss_pred H---HHhhEEECCCCCCcCcEEEEcCCeEEEEccCCCCC
Confidence 0 01234668 788875 456689999999753
No 85
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.54 E-value=45 Score=26.20 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=16.4
Q ss_pred EeecCCCChHHHHHHHHHH
Q 040083 497 VTIKNNATFDELKLEVQRN 515 (635)
Q Consensus 497 v~lp~~ATv~dLK~ea~ra 515 (635)
+-+++++||+|||...++.
T Consensus 22 ~~v~~~~tV~~LK~~i~~~ 40 (81)
T 2dzi_A 22 LQVPEDELVSTLKQLVSEK 40 (81)
T ss_dssp EEECSSCBHHHHHHHHHHH
T ss_pred EEECCCCcHHHHHHHHHHH
Confidence 5788999999999998764
No 86
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=24.20 E-value=20 Score=38.48 Aligned_cols=52 Identities=17% Similarity=0.337 Sum_probs=39.7
Q ss_pred CCCceEEe-ecCCCCCCCcceeecc--ccCceeeccccccCCCCC------CCCceecCCCcccc
Q 040083 573 MVNCVVEC-ACGADEDDGERMVSCD--ICEVWQHTRCARIPNNEE------IPHIFLCNRCEQEI 628 (635)
Q Consensus 573 ~e~~~VrC-iCG~~dDDGe~MI~CD--~C~vWQH~~CvgI~~~~~------vP~~y~C~~C~~~~ 628 (635)
+|....+| +||. |..++.|| .|..=+=..|+...-.+. .-+.|.|..|.++.
T Consensus 89 ~DG~~~yCr~C~~----Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 89 DDGYQSYCSICCS----GETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp SSSSBCSCTTTCC----CSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred CCCCcccceEcCC----CCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 46677788 8883 34799999 899888899987664321 24789999999886
No 87
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=24.14 E-value=47 Score=26.34 Aligned_cols=20 Identities=15% Similarity=0.338 Sum_probs=16.9
Q ss_pred EeecCCCChHHHHHHHHHHH
Q 040083 497 VTIKNNATFDELKLEVQRNF 516 (635)
Q Consensus 497 v~lp~~ATv~dLK~ea~raf 516 (635)
+-+++++||.|||...++..
T Consensus 18 ~~v~~~~tV~~lK~~i~~~~ 37 (85)
T 3n3k_B 18 LEVEPSDTIENVKAKIQDKE 37 (85)
T ss_dssp EECCTTCBHHHHHHHHHHHH
T ss_pred EEECCCCcHHHHHHHHHHHH
Confidence 56788999999999988754
No 88
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=22.79 E-value=57 Score=25.31 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=16.8
Q ss_pred EeecCCCChHHHHHHHHHHH
Q 040083 497 VTIKNNATFDELKLEVQRNF 516 (635)
Q Consensus 497 v~lp~~ATv~dLK~ea~raf 516 (635)
+-+++++||.|||...+...
T Consensus 18 ~~v~~~~tV~~LK~~i~~~~ 37 (77)
T 2bwf_A 18 VNVAPESTVLQFKEAINKAN 37 (77)
T ss_dssp EEECTTCBHHHHHHHHHHHH
T ss_pred EEECCCCcHHHHHHHHHHHh
Confidence 56789999999999988753
No 89
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=22.15 E-value=66 Score=27.87 Aligned_cols=52 Identities=19% Similarity=0.317 Sum_probs=36.3
Q ss_pred HHHHHHH--HhCCchhhHhcccCC-----CCCChhHHHHHhhcccc-hhhhcHHHHHHHH
Q 040083 221 YQKAIEA--IQGMPLCLLLNHLGH-----LNPDIPLIFTRYQTLSD-HFLATLGDLFHFL 272 (635)
Q Consensus 221 Y~~Aie~--Lss~pL~~~~~~~~~-----~~~~l~~ii~~Yq~lS~-~~L~Tl~dL~~fm 272 (635)
++||-|. |-...++.+++.-.+ .++.++.|+++|+..++ ++=.|-.|++.++
T Consensus 28 ~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~~~~~~~~d~~e~~ 87 (90)
T 3p57_A 28 MKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVEAL 87 (90)
T ss_dssp HHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSCCCEECHHHHHHHH
T ss_pred HHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCcccccCChHhHHHHH
Confidence 5677665 888888888753221 13589999999999886 4555667777654
No 90
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.95 E-value=61 Score=26.79 Aligned_cols=54 Identities=20% Similarity=0.374 Sum_probs=34.8
Q ss_pred ceEEe-ecCCCCCCCcceeeccccCceeeccccccCCCCCCCCceecCCCcccc-cCCCCC
Q 040083 576 CVVEC-ACGADEDDGERMVSCDICEVWQHTRCARIPNNEEIPHIFLCNRCEQEI-VHLSSL 634 (635)
Q Consensus 576 ~~VrC-iCG~~dDDGe~MI~CD~C~vWQH~~CvgI~~~~~vP~~y~C~~C~~~~-~~~~~~ 634 (635)
....| ||......| +.|..|+.=+|..|+.---.. ...=.||.|+..- ...|.+
T Consensus 14 ~i~~C~IC~~~i~~g---~~C~~C~h~fH~~Ci~kWl~~--~~~~~CP~Cr~~w~~~~~~~ 69 (74)
T 2ct0_A 14 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQS--NAEPRCPHCNDYWPHEIPKS 69 (74)
T ss_dssp SSCBCSSSCCBCSSS---EECSSSCCEECHHHHHHHSTT--CSSCCCTTTCSCCCSCCCCC
T ss_pred CCCcCcchhhHcccC---CccCCCCchhhHHHHHHHHHh--cCCCCCCCCcCcCCCCCCCC
Confidence 34457 888776666 688899999999999732100 0112699998663 234444
No 91
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=20.93 E-value=26 Score=33.36 Aligned_cols=53 Identities=15% Similarity=0.312 Sum_probs=39.9
Q ss_pred CCCceEEe-ecCCCCCCCcceeecc--ccCceeeccccccCCCC------CCCCceecCCCccccc
Q 040083 573 MVNCVVEC-ACGADEDDGERMVSCD--ICEVWQHTRCARIPNNE------EIPHIFLCNRCEQEIV 629 (635)
Q Consensus 573 ~e~~~VrC-iCG~~dDDGe~MI~CD--~C~vWQH~~CvgI~~~~------~vP~~y~C~~C~~~~~ 629 (635)
+|....+| +||. |..++.|| .|..=+=..|+...-++ ..-+.|.|..|.+..+
T Consensus 75 eDG~~~yC~wC~~----Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~l 136 (159)
T 3a1b_A 75 DDGYQSYCTICCG----GREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKGT 136 (159)
T ss_dssp TTSSBSSCTTTSC----CSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSCE
T ss_pred CCCCcceeeEecC----CCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCccH
Confidence 35556678 8883 44899999 79999999998766432 1257899999998763
No 92
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=20.77 E-value=63 Score=27.10 Aligned_cols=20 Identities=25% Similarity=0.228 Sum_probs=17.5
Q ss_pred EeecCCCChHHHHHHHHHHH
Q 040083 497 VTIKNNATFDELKLEVQRNF 516 (635)
Q Consensus 497 v~lp~~ATv~dLK~ea~raf 516 (635)
|-+++++||.|||...+...
T Consensus 31 i~v~~~~TV~~LK~~I~~~t 50 (95)
T 1v86_A 31 VKVPLDSTGSELKQKIHSIT 50 (95)
T ss_dssp EEECTTSBHHHHHHHHHHHH
T ss_pred EEECCCCcHHHHHHHHHHHH
Confidence 67899999999999988764
No 93
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=20.14 E-value=3.8e+02 Score=22.37 Aligned_cols=104 Identities=8% Similarity=0.067 Sum_probs=59.9
Q ss_pred ccCHHHHHHHHHHHhCCchhhHhcccCCCCCChhHHHHHhhcccchhhhcHHHHHHHHHhhhhcCCcccCCCCCCCCCCc
Q 040083 215 GVTQPMYQKAIEAIQGMPLCLLLNHLGHLNPDIPLIFTRYQTLSDHFLATLGDLFHFLLDLKSRLPKENCNFGSYNPGIL 294 (635)
Q Consensus 215 gvt~~~Y~~Aie~Lss~pL~~~~~~~~~~~~~l~~ii~~Yq~lS~~~L~Tl~dL~~fmL~l~~~~p~~~~~~~~~~~~~~ 294 (635)
-+|.+...+++..+..- .+...+..++..|- ......+|+.|++.++.......... .
T Consensus 30 ~i~~~e~~~~l~~~~~~----------~~~~~~~~l~~~~D-~~~~g~i~~~eF~~~~~~~~~~~~~~---------~-- 87 (158)
T 2jnf_A 30 RVSTDQIGIILEVLGIQ----------QTKSTIRQLIDEFD-PFGNGDIDFDSFKIIGARFLGEEVNP---------E-- 87 (158)
T ss_dssp SEEHHHHHHHHHHTTCS----------CSHHHHHHHHHHHC-TTCCSEECHHHHHHHHHHHCCCCCCT---------T--
T ss_pred cCcHHHHHHHHHHhCCC----------CCHHHHHHHHHHhC-CCCCCcCcHHHHHHHHHHHhccccch---------h--
Confidence 37777777777765321 12234666666653 33456789999999887655321000 0
Q ss_pred ccccCCcchHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHhcccC---CcchHHHHHHhc
Q 040083 295 VETNCRWSAKRVEMATRVIVESLKRAESRWVSRQEVRDVARSYVG---DTGLLDFVLKSL 351 (635)
Q Consensus 295 ~~~~~rWs~~r~~~a~~~~v~vLr~~~~~wvsr~~LR~aar~~Ig---dtgLLD~~LK~l 351 (635)
...+. .+.+++.+-..+..-|++.+++.+++. +| +...++.+++.+
T Consensus 88 ------~~~~~----~~~~F~~~D~d~~G~I~~~el~~~l~~-~g~~~~~~~~~~~~~~~ 136 (158)
T 2jnf_A 88 ------QMQQE----LREAFRLYDKEGNGYISTDVMREILAE-LDETLSSEDLDAMIDEI 136 (158)
T ss_dssp ------TTSST----HHHHHHHHCSSSSSSEEHHHHHHHHHH-HCTTCCHHHHHHHHHHH
T ss_pred ------hHHHH----HHHHHHHhCCCCCCeEcHHHHHHHHHH-hCCcCCHHHHHHHHHHh
Confidence 00111 233444443333357999999999886 45 446677777766
Done!