Your job contains 1 sequence.
>040084
PISPSSPEIPPRFVKAVLPSTLRDQKPRIPNKIVRKFSHELSDVAHITIPNGYVWQVKLK
KEGRKVWFDDGWQDFVEAYSTFVGSLVLFEYESNSTFQAHIYDETACEINYPSSNEESHT
NGEESHH
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 040084
(127 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2085849 - symbol:VRN1 "REDUCED VERNALIZATION R... 270 1.8e-23 1
TAIR|locus:2133362 - symbol:AT4G01580 species:3702 "Arabi... 253 1.1e-21 1
TAIR|locus:2085859 - symbol:AT3G18960 species:3702 "Arabi... 238 4.4e-20 1
TAIR|locus:504956318 - symbol:AT1G49475 species:3702 "Ara... 198 7.7e-16 1
TAIR|locus:2124879 - symbol:AT4G31640 species:3702 "Arabi... 137 1.1e-08 1
TAIR|locus:2124839 - symbol:AT4G31690 species:3702 "Arabi... 139 1.1e-08 1
TAIR|locus:2124824 - symbol:AT4G31680 species:3702 "Arabi... 130 1.1e-07 1
TAIR|locus:2017953 - symbol:AT1G16640 species:3702 "Arabi... 112 1.0e-06 1
TAIR|locus:2124794 - symbol:AT4G31660 species:3702 "Arabi... 111 3.8e-06 1
TAIR|locus:2126016 - symbol:MEE45 "maternal effect embryo... 109 2.4e-05 1
TAIR|locus:2119166 - symbol:AT4G33280 species:3702 "Arabi... 106 2.5e-05 1
TAIR|locus:2158108 - symbol:AT5G66980 species:3702 "Arabi... 102 6.7e-05 1
TAIR|locus:2161533 - symbol:VDD "VERDANDI" species:3702 "... 100 9.6e-05 1
TAIR|locus:2082480 - symbol:AT3G06220 species:3702 "Arabi... 94 0.00011 1
TAIR|locus:2083921 - symbol:AT3G53310 species:3702 "Arabi... 95 0.00030 1
TAIR|locus:2047241 - symbol:AT2G24700 species:3702 "Arabi... 99 0.00030 1
TAIR|locus:2102812 - symbol:AT3G46770 species:3702 "Arabi... 93 0.00046 1
TAIR|locus:2200620 - symbol:AT1G26680 species:3702 "Arabi... 97 0.00092 1
>TAIR|locus:2085849 [details] [associations]
symbol:VRN1 "REDUCED VERNALIZATION RESPONSE 1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0009909 "regulation of flower development"
evidence=IMP] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0010048
"vernalization response" evidence=IMP] InterPro:IPR003340
Pfam:PF02362 PROSITE:PS50863 SMART:SM01019 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005654 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0010048 GO:GO:0009909 EMBL:AP000735
UniGene:At.27524 UniGene:At.24480 HOGENOM:HOG000005864
EMBL:AF289051 EMBL:AF289052 EMBL:BT024731 EMBL:AK230388
EMBL:AB493620 IPI:IPI00546581 RefSeq:NP_188529.2 PDB:4I1K
PDBsum:4I1K ProteinModelPortal:Q8L3W1 SMR:Q8L3W1 IntAct:Q8L3W1
STRING:Q8L3W1 PaxDb:Q8L3W1 PRIDE:Q8L3W1 DNASU:821432
EnsemblPlants:AT3G18990.1 GeneID:821432 KEGG:ath:AT3G18990
TAIR:At3g18990 eggNOG:NOG315946 InParanoid:Q8L3W1 OMA:EINSSAP
PhylomeDB:Q8L3W1 ProtClustDB:CLSN2679965 Genevestigator:Q8L3W1
Uniprot:Q8L3W1
Length = 341
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 47/111 (42%), Positives = 75/111 (67%)
Query: 13 FVKAVLPSTLRDQKPRIPNKIVRKFSHELSDVAHITIPNGYVWQVKLKKEGRKVWFDDGW 72
F K + ST+++++ R+P+K V KF ELS +T+P+G+VW+V L+K K+WF DGW
Sbjct: 6 FHKLIFSSTIQEKRLRVPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADNKIWFQDGW 65
Query: 73 QDFVEAYSTFVGSLVLFEYESNSTFQAHIYDETACEINYPSSN--EESHTN 121
Q+FV+ YS +G L++F YE NS F +I++ + EINY S+ + +H +
Sbjct: 66 QEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINYHSTGLMDSAHNH 116
>TAIR|locus:2133362 [details] [associations]
symbol:AT4G01580 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;ISS]
InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863 SMART:SM01019
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AL161492 EMBL:AF104919 UniGene:At.34404
HOGENOM:HOG000155078 ProtClustDB:CLSN2685511 EMBL:BT010604
EMBL:AK175333 IPI:IPI00544726 PIR:T02015 RefSeq:NP_192068.1
ProteinModelPortal:Q9ZSH7 SMR:Q9ZSH7 IntAct:Q9ZSH7 STRING:Q9ZSH7
EnsemblPlants:AT4G01580.1 GeneID:828118 KEGG:ath:AT4G01580
TAIR:At4g01580 PhylomeDB:Q9ZSH7 Genevestigator:Q9ZSH7
Uniprot:Q9ZSH7
Length = 190
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 45/101 (44%), Positives = 68/101 (67%)
Query: 12 RFVKAVLPSTLRDQKPRIPNKIVRKFSHELSDVAHITIPNGYVWQVKLKKEGRKVWFDDG 71
+F K VLPST++D+ RIP + V+ +LS+V + P GY +KLK+ G ++WF +G
Sbjct: 29 KFFKLVLPSTMKDKMMRIPPRFVKLQGSKLSEVVTLVTPAGYKRSIKLKRIGEEIWFHEG 88
Query: 72 WQDFVEAYSTFVGSLVLFEYESNSTFQAHIYDETACEINYP 112
W +F EA+S G +LFEY+ NS+F+ I++ +ACE NYP
Sbjct: 89 WSEFAEAHSIEEGHFLLFEYKKNSSFRVIIFNASACETNYP 129
>TAIR|locus:2085859 [details] [associations]
symbol:AT3G18960 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;ISS]
InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863 SMART:SM01019
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AP000735 UniGene:At.34404 UniGene:At.66475
HOGENOM:HOG000155078 ProtClustDB:CLSN2685511 EMBL:BT006139
EMBL:BT008541 EMBL:AK229681 IPI:IPI00539394 RefSeq:NP_188526.2
ProteinModelPortal:Q84R27 SMR:Q84R27 IntAct:Q84R27
EnsemblPlants:AT3G18960.1 GeneID:821429 KEGG:ath:AT3G18960
TAIR:At3g18960 PhylomeDB:Q84R27 Genevestigator:Q84R27
Uniprot:Q84R27
Length = 209
Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 42/101 (41%), Positives = 67/101 (66%)
Query: 12 RFVKAVLPSTLRDQKPRIPNKIVRKFSHELSDVAHITIPNGYVWQVKLKKEGRKVWFDDG 71
+F K VLPST++D+ +IP + V+ +LS+V + P G+ +KLK+ G ++WF +G
Sbjct: 29 KFFKLVLPSTMKDKMMKIPPRFVKLQGSKLSEVVTLETPAGFKRSIKLKRIGEEIWFHEG 88
Query: 72 WQDFVEAYSTFVGSLVLFEYESNSTFQAHIYDETACEINYP 112
W +F EA+S G +LFEY+ NS+F+ I++ +ACE YP
Sbjct: 89 WSEFAEAHSIEEGHFLLFEYKENSSFRVIIFNVSACETKYP 129
>TAIR|locus:504956318 [details] [associations]
symbol:AT1G49475 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;ISS]
InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AC007504 EMBL:BX817688 IPI:IPI00524854
PIR:D96531 RefSeq:NP_683415.2 UniGene:At.49960
ProteinModelPortal:Q9XIB4 SMR:Q9XIB4 EnsemblPlants:AT1G49475.1
GeneID:841371 KEGG:ath:AT1G49475 TAIR:At1g49475 eggNOG:NOG287861
HOGENOM:HOG000155078 OMA:PRVNIKS PhylomeDB:Q9XIB4
ProtClustDB:CLSN2685511 Genevestigator:Q9XIB4 Uniprot:Q9XIB4
Length = 190
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 39/113 (34%), Positives = 68/113 (60%)
Query: 12 RFVKAVLPSTLRDQKPRIPNKIVRKFSHELSDVAHITIPNGYVWQVKLKKEGRKVWFDDG 71
+F+K +L S + ++ ++P + VR F +L+D + P G+ +++K+ G +VWF+ G
Sbjct: 33 KFIKIILLSRIIEKMMKVPARFVR-FGPKLTDNVTLQTPVGFKRSIRIKRIGDEVWFEKG 91
Query: 72 WQDFVEAYSTFVGSLVLFEYESNSTFQAHIYDETACEINYPSSNEESHTNGEE 124
W +F EA+S G + F YE +S F+ I+D +A EI YP +++ N EE
Sbjct: 92 WSEFAEAHSLSDGHFLFFHYEGDSCFRVVIFDVSASEIEYPL--DDTDDNREE 142
>TAIR|locus:2124879 [details] [associations]
symbol:AT4G31640 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;ISS]
InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863 SMART:SM01019
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AL161579 EMBL:AL031004 HOGENOM:HOG000154088
HSSP:Q9FX77 EMBL:AJ441074 EMBL:AY142531 EMBL:AB493714
IPI:IPI00528633 PIR:T05106 RefSeq:NP_194892.1 UniGene:At.31730
ProteinModelPortal:Q9SB80 SMR:Q9SB80 EnsemblPlants:AT4G31640.1
GeneID:829292 KEGG:ath:AT4G31640 TAIR:At4g31640 eggNOG:NOG265345
InParanoid:Q9SB80 OMA:LQLGDLC PhylomeDB:Q9SB80
Genevestigator:Q9SB80 Uniprot:Q9SB80
Length = 352
Score = 137 (53.3 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 41/123 (33%), Positives = 61/123 (49%)
Query: 13 FVKAVLPSTLRDQKPRIPNKIVRKF---SHELSDVAHITIPNGYVWQVKLKKEGRKVWFD 69
F + +LP K IP K K HE + V + P+ W+VK+ EG K+
Sbjct: 14 FFQPILPGFKSHIK--IPVKFFSKHIEGKHEGNTVYLRSYPSRRTWKVKM--EGHKL--T 67
Query: 70 DGWQDFVEAYSTFVGSLVLFEYESNSTFQAHIYDETACEINY-PSS----NEESHTNGEE 124
+GW++FVEA+ VG V+F+++ + F + CE+ Y PS NEES GE
Sbjct: 68 EGWKEFVEAHDLRVGDFVVFKHKGDMLFHVTAIGPSCCEVQYAPSRSHDRNEESDEIGES 127
Query: 125 SHH 127
S +
Sbjct: 128 SRN 130
>TAIR|locus:2124839 [details] [associations]
symbol:AT4G31690 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0009941 "chloroplast envelope" evidence=IDA] InterPro:IPR003340
Pfam:PF02362 PROSITE:PS50863 SMART:SM01019 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006355 GO:GO:0003677
GO:GO:0009941 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AL161579 EMBL:AL031004 HOGENOM:HOG000154088
HSSP:Q9FX77 eggNOG:NOG262844 ProtClustDB:CLSN2685879 EMBL:AJ441294
IPI:IPI00526797 PIR:T05101 RefSeq:NP_194897.1 UniGene:At.31723
ProteinModelPortal:O81778 SMR:O81778 EnsemblPlants:AT4G31690.1
GeneID:829297 KEGG:ath:AT4G31690 TAIR:At4g31690 InParanoid:O81778
PhylomeDB:O81778 Genevestigator:O81778 Uniprot:O81778
Length = 461
Score = 139 (54.0 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 31/87 (35%), Positives = 46/87 (52%)
Query: 39 HELSDVAHITIPNGYVWQVKLKKEGRKVWFDDGWQDFVEAYSTFVGSLVLFEYESNSTFQ 98
HE V T + W+VK+ EG ++ +GW++FVEA+ +G V+F +E + F
Sbjct: 41 HEGKTVTLRTDASERTWEVKM--EGHRL--TEGWKEFVEAHDLRIGDFVVFRHEGDMVFH 96
Query: 99 AHIYDETACEINYPSSNEESHTNGEES 125
+ CEI YP S+ H GEES
Sbjct: 97 VTALGPSCCEIQYPQSSR--HEEGEES 121
>TAIR|locus:2124824 [details] [associations]
symbol:AT4G31680 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;ISS]
InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863 SMART:SM01019
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AL161579 EMBL:AL031004 HOGENOM:HOG000154088
HSSP:Q9FX77 EMBL:AJ515262 IPI:IPI00530013 PIR:T05102
RefSeq:NP_194896.2 UniGene:At.31724 ProteinModelPortal:Q8H2D1
SMR:Q8H2D1 PaxDb:Q8H2D1 PRIDE:Q8H2D1 EnsemblPlants:AT4G31680.1
GeneID:829296 KEGG:ath:AT4G31680 TAIR:At4g31680 eggNOG:NOG262844
InParanoid:Q8H2D1 OMA:QHLPVSF PhylomeDB:Q8H2D1
ProtClustDB:CLSN2685879 Genevestigator:Q8H2D1 Uniprot:Q8H2D1
Length = 462
Score = 130 (50.8 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 37/116 (31%), Positives = 55/116 (47%)
Query: 13 FVKAVLPSTLRDQKPRIPNKIVRKF---SHELSDVAHITIPNGYVWQVKLKKEGRKVWFD 69
F K +LP R+ IP K + HE V + W+VK+ +G ++
Sbjct: 14 FFKPLLPGFQRNLN--IPVKFFSEHIEGKHEGETVKLRADASKRTWEVKM--DGNRL--T 67
Query: 70 DGWQDFVEAYSTFVGSLVLFEYESNSTFQAHIYDETACEINYPSSNEESHTNGEES 125
+GW++FVEA+ + V+F +E + F + CEI YP S SH GEES
Sbjct: 68 EGWKEFVEAHDLRIRDFVVFRHEGDMVFHVTALGPSCCEIQYPQSI--SHEEGEES 121
>TAIR|locus:2017953 [details] [associations]
symbol:AT1G16640 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;ISS]
InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AC011808 EMBL:BT012511 EMBL:BT014811
IPI:IPI00519755 PIR:E86301 RefSeq:NP_173109.1 UniGene:At.41877
PDB:1YEL PDBsum:1YEL ProteinModelPortal:Q9FX77 SMR:Q9FX77
DNASU:838233 EnsemblPlants:AT1G16640.1 GeneID:838233
KEGG:ath:AT1G16640 TAIR:At1g16640 eggNOG:NOG262155
HOGENOM:HOG000097068 InParanoid:Q9FX77 OMA:MADTGEV PhylomeDB:Q9FX77
ProtClustDB:CLSN2914317 EvolutionaryTrace:Q9FX77
Genevestigator:Q9FX77 GermOnline:AT1G16640 Uniprot:Q9FX77
Length = 134
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 51 NGYVWQVKLKKEGRKVWFDDGWQDFVEAYSTFVGSLVLFEYESNSTFQAHIYDETACEI- 109
+G W V++KK G KV+ GW++FV+ + G + F Y+ + TF IY C
Sbjct: 46 SGRSWTVRMKKRGEKVFLTVGWENFVKDNNLEDGKYLQFIYDRDRTFYVIIYGHNMCSEY 105
Query: 110 -NYPSSNEE--SHTNGEE 124
++P E + NGEE
Sbjct: 106 RDFPQVAVEVDDYENGEE 123
>TAIR|locus:2124794 [details] [associations]
symbol:AT4G31660 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;ISS]
InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863 SMART:SM01019
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AL161579 EMBL:AL031004 HOGENOM:HOG000154088
EMBL:AJ515263 IPI:IPI00526189 PIR:T05104 RefSeq:NP_194894.2
UniGene:At.31728 ProteinModelPortal:Q8H2D0 SMR:Q8H2D0 PRIDE:Q8H2D0
EnsemblPlants:AT4G31660.1 GeneID:829294 KEGG:ath:AT4G31660
TAIR:At4g31660 eggNOG:NOG304844 InParanoid:Q8H2D0 OMA:NEEARTW
PhylomeDB:Q8H2D0 Genevestigator:Q8H2D0 Uniprot:Q8H2D0
Length = 251
Score = 111 (44.1 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 24/69 (34%), Positives = 41/69 (59%)
Query: 55 WQVKLKKEGRKVWFDDGWQDFVEAYSTFVGSLVLFEYESNSTFQAHIYDETACEINY-PS 113
WQVK+ +GR++ GW++F A+ VG +++F +E + F + CEI Y PS
Sbjct: 57 WQVKI--QGRRLTV--GWKEFASAHDFRVGDIIVFRHEGSLVFHVTALGPSCCEIQYVPS 112
Query: 114 -SNEESHTN 121
+N+E+ +N
Sbjct: 113 CNNQENISN 121
>TAIR|locus:2126016 [details] [associations]
symbol:MEE45 "maternal effect embryo arrest 45"
species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0009793 "embryo development
ending in seed dormancy" evidence=IMP] InterPro:IPR003340
Pfam:PF02362 PROSITE:PS50863 SMART:SM01019 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0009793 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AF013293 EMBL:AF195115 EMBL:AL161471
HOGENOM:HOG000154088 IPI:IPI00542107 PIR:T01545 RefSeq:NP_567162.2
UniGene:At.54056 ProteinModelPortal:O23076 SMR:O23076 PaxDb:O23076
PRIDE:O23076 EnsemblPlants:AT4G00260.1 GeneID:828225
KEGG:ath:AT4G00260 TAIR:At4g00260 InParanoid:O23076 OMA:AHITRSS
PhylomeDB:O23076 ProtClustDB:CLSN2680937 Genevestigator:O23076
Uniprot:O23076
Length = 528
Score = 109 (43.4 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 21/70 (30%), Positives = 40/70 (57%)
Query: 55 WQVKLKKEGRKVWFDDGWQDFVEAYSTFVGSLVLFEYESNSTFQAHIYDETACEINYPSS 114
W+VK+ +G+++ DGW++F ++ +G +V+F ES+ F + + C I Y S
Sbjct: 49 WEVKI--DGQRL--TDGWKEFAVSHDLRIGDIVVFRQESDLAFHVTLLGPSCCGIQYGSC 104
Query: 115 NEESHTNGEE 124
+ E + G+E
Sbjct: 105 SVEKNNLGDE 114
>TAIR|locus:2119166 [details] [associations]
symbol:AT4G33280 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0005773 "vacuole" evidence=IDA] InterPro:IPR003340 Pfam:PF02362
PROSITE:PS50863 SMART:SM01019 GO:GO:0005634 GO:GO:0005773
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 EMBL:AL035678 EMBL:AL161583 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 EMBL:AJ441117 IPI:IPI00520178
PIR:T05979 RefSeq:NP_195054.2 UniGene:At.31598
ProteinModelPortal:Q8RYD1 SMR:Q8RYD1 EnsemblPlants:AT4G33280.1
GeneID:829464 KEGG:ath:AT4G33280 TAIR:At4g33280 eggNOG:NOG318846
HOGENOM:HOG000154089 InParanoid:Q8RYD1 OMA:EMISAGS PhylomeDB:Q8RYD1
ProtClustDB:CLSN2918854 Genevestigator:Q8RYD1 Uniprot:Q8RYD1
Length = 337
Score = 106 (42.4 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 32/118 (27%), Positives = 56/118 (47%)
Query: 27 PRIPNKIV--RKFS-H---ELSDVAHITIPNGYVWQVKLKKEGRKVW-FDDGWQDFVEAY 79
P N++V RKFS H +L + + P+G + V ++++ K F GW FV+ +
Sbjct: 31 PGFHNRLVIPRKFSTHCKRKLPQIVTLKSPSGVTYNVGVEEDDEKTMAFRFGWDKFVKDH 90
Query: 80 STFVGSLVLFEYESNSTFQAHIYD-ETACE---------INYPSSNEESHTNGEESHH 127
S L++F++ S F+ ++D +T CE + + SHT E+ H
Sbjct: 91 SLEENDLLVFKFHGVSEFEVLVFDGQTLCEKPTSYFVRKCGHAEKTKASHTGYEQEEH 148
>TAIR|locus:2158108 [details] [associations]
symbol:AT5G66980 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;ISS;IDA]
InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863 SMART:SM01019
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AB026640 HSSP:Q9FX77 IPI:IPI00522166
RefSeq:NP_201499.1 UniGene:At.55721 ProteinModelPortal:Q9FGD2
SMR:Q9FGD2 EnsemblPlants:AT5G66980.1 GeneID:836832
KEGG:ath:AT5G66980 TAIR:At5g66980 eggNOG:NOG256774
HOGENOM:HOG000155376 InParanoid:Q9FGD2 OMA:KFSHESW PhylomeDB:Q9FGD2
ProtClustDB:CLSN2916529 Genevestigator:Q9FGD2 Uniprot:Q9FGD2
Length = 334
Score = 102 (41.0 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 30/119 (25%), Positives = 49/119 (41%)
Query: 12 RFVKAVLPSTLRDQKPRIPNKIVRKFSHELSDVAHITIPNGYVWQVKLKKEGRK----VW 67
+F K LP + IP + L A + G +W V+ K E + V+
Sbjct: 9 QFFKVFLPE-FGSHELVIPPAFIDMLEKPLPKEAFLVDEIGRLWCVETKTEDTEERFCVF 67
Query: 68 FDDGWQDFVEAYSTFVGSLVLFEYESNSTFQAHIYDETAC--EINYPSSNEESHTNGEE 124
F GWQ F S G ++F Y+ +S F I+ C ++ S+ + S + +E
Sbjct: 68 FTKGWQSFANDQSLEFGDFLVFSYDGDSRFSVTIFANDGCKKDVGVVSTTDRSRVSLDE 126
>TAIR|locus:2161533 [details] [associations]
symbol:VDD "VERDANDI" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0009553 "embryo sac development" evidence=IMP] [GO:0009567
"double fertilization forming a zygote and endosperm" evidence=IMP]
InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863 SMART:SM01019
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0009553 GO:GO:0009567 HOGENOM:HOG000131629
ProtClustDB:CLSN2681146 EMBL:AB015473 UniGene:At.19968
UniGene:At.71230 EMBL:AK227035 IPI:IPI00525697 RefSeq:NP_197301.1
ProteinModelPortal:Q9FJG2 SMR:Q9FJG2 EnsemblPlants:AT5G18000.1
GeneID:831667 KEGG:ath:AT5G18000 TAIR:At5g18000 eggNOG:NOG257290
InParanoid:Q9FJG2 OMA:FTHEANM PhylomeDB:Q9FJG2
Genevestigator:Q9FJG2 Uniprot:Q9FJG2
Length = 307
Score = 100 (40.3 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 24/86 (27%), Positives = 39/86 (45%)
Query: 29 IPNKIVRKFSHELSDVAHIT-IPNGYVWQVKLKKEGRKVWFDD-GWQDFVEAYSTFVGSL 86
IP+ ++R S + S + +P G WQVK+ K + +D GW FV
Sbjct: 37 IPHHLIRSISDKSSSFKMVLRVPWGRSWQVKISKNPNFHYMEDRGWNQFVNDNGLGENEY 96
Query: 87 VLFEYESNSTFQAHIYDETACEINYP 112
+ F +E+N F I++ E+ P
Sbjct: 97 LTFTHEANMCFNVTIFEADGTEMLRP 122
>TAIR|locus:2082480 [details] [associations]
symbol:AT3G06220 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0008283 "cell proliferation" evidence=RCA] [GO:0009855
"determination of bilateral symmetry" evidence=RCA] [GO:0009887
"organ morphogenesis" evidence=RCA] [GO:0009944 "polarity
specification of adaxial/abaxial axis" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010051 "xylem and phloem
pattern formation" evidence=RCA] [GO:0048439 "flower morphogenesis"
evidence=RCA] [GO:0048451 "petal formation" evidence=RCA]
[GO:0048453 "sepal formation" evidence=RCA] [GO:0048519 "negative
regulation of biological process" evidence=RCA] InterPro:IPR003340
Pfam:PF02362 PROSITE:PS50863 SMART:SM01019 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AC018907 EMBL:DQ446640 EMBL:DQ653069
EMBL:AB493604 IPI:IPI00528156 RefSeq:NP_187273.2 UniGene:At.53201
ProteinModelPortal:Q1PES7 SMR:Q1PES7 EnsemblPlants:AT3G06220.1
GeneID:819796 KEGG:ath:AT3G06220 TAIR:At3g06220 eggNOG:NOG303845
HOGENOM:HOG000155280 InParanoid:Q1PES7 OMA:VTPMPVE PhylomeDB:Q1PES7
ProtClustDB:CLSN2920256 Genevestigator:Q1PES7 Uniprot:Q1PES7
Length = 174
Score = 94 (38.1 bits), Expect = 0.00011, P = 0.00011
Identities = 23/97 (23%), Positives = 40/97 (41%)
Query: 12 RFVKAVLPSTLRDQKPRIPNKIVRKFSHELSDVAHITIPNGYVWQVKLKKEGRKVWFDDG 71
RF L S + IP L A +T G VW+V + + +V+ G
Sbjct: 9 RFYTVFL-SCVSSNSLLIPRSYYEHLPRRLPKTAILTGTGGRVWKVAMMSKREQVYLARG 67
Query: 72 WQDFVEAYSTFVGSLVLFEYESNSTFQAHIYDETACE 108
W++FV G + F ++ +++ IY +C+
Sbjct: 68 WENFVADNELKDGEFLTFVFDGYKSYEVSIYGRGSCK 104
>TAIR|locus:2083921 [details] [associations]
symbol:AT3G53310 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;ISS]
InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863 SMART:SM01019
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 EMBL:AL132966 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 HSSP:Q9FX77 EMBL:BT025724
EMBL:AB493647 EMBL:AY087586 IPI:IPI00519323 PIR:T45871
RefSeq:NP_566984.1 UniGene:At.47486 ProteinModelPortal:Q8LAV5
SMR:Q8LAV5 PRIDE:Q8LAV5 EnsemblPlants:AT3G53310.1 GeneID:824499
KEGG:ath:AT3G53310 TAIR:At3g53310 eggNOG:NOG240874
HOGENOM:HOG000097078 InParanoid:Q8LAV5 OMA:VECELLH PhylomeDB:Q8LAV5
ProtClustDB:CLSN2689141 Genevestigator:Q8LAV5 Uniprot:Q8LAV5
Length = 286
Score = 95 (38.5 bits), Expect = 0.00030, P = 0.00030
Identities = 30/119 (25%), Positives = 48/119 (40%)
Query: 12 RFVKAVLPSTLRDQKPRIPNKIVRKFSHELSDVAHITIPNGYVWQVKLKKEGRKVWFDDG 71
RF K L + + IP + + L + G +W V LKK + G
Sbjct: 10 RFFKVFLVESASESL-MIPLPFMAFLADPLPKTVKLQGLGGKLWTVSLKKISGAAYLTRG 68
Query: 72 WQDFVEAYSTFVGSLVLFEYESNSTFQAHIYD-----ETACEIN-YPSSNEESHTNGEE 124
W F E + G + F Y+ + TF+ ++D E EI P S+ +S + E+
Sbjct: 69 WPKFAEEHELKNGEFMTFVYDGHRTFEVSVFDRWGSKEVRAEIQAIPLSDSDSDSVVED 127
>TAIR|locus:2047241 [details] [associations]
symbol:AT2G24700 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;ISS]
InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863 SMART:SM01019
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AC007266 EMBL:BX819051 IPI:IPI00529810
PIR:H84639 RefSeq:NP_180046.2 UniGene:At.50095
ProteinModelPortal:P0DH85 SMR:P0DH85 PRIDE:P0DH85 GeneID:817006
KEGG:ath:AT2G24700 TAIR:At2g24700 HOGENOM:HOG000154088 OMA:RSDASEM
PhylomeDB:P0DH85 Uniprot:P0DH85
Length = 555
Score = 99 (39.9 bits), Expect = 0.00030, P = 0.00030
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 55 WQVKLKKEGRKVWFDDGWQDFVEAYSTFVGSLVLFEYESNSTFQAHIYDETACEINY 111
W+VK+ +GR++ +GW+DF A+ VG +V+F E F + CEI Y
Sbjct: 57 WKVKI--DGRRL--SNGWEDFTIAHDLRVGDIVVFRQEGELVFHVTALGPSCCEIQY 109
>TAIR|locus:2102812 [details] [associations]
symbol:AT3G46770 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;ISS]
InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863 SMART:SM01019
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AL096859 IPI:IPI00538372 IPI:IPI00846945
PIR:T12971 RefSeq:NP_001078253.1 RefSeq:NP_190261.1
UniGene:At.53802 ProteinModelPortal:Q9STF1 SMR:Q9STF1 PRIDE:Q9STF1
EnsemblPlants:AT3G46770.1 GeneID:823830 KEGG:ath:AT3G46770
TAIR:At3g46770 eggNOG:NOG293988 HOGENOM:HOG000097080
InParanoid:Q9STF1 OMA:MEMKANG PhylomeDB:Q9STF1
ProtClustDB:CLSN2685129 Genevestigator:Q9STF1 Uniprot:Q9STF1
Length = 276
Score = 93 (37.8 bits), Expect = 0.00046, P = 0.00046
Identities = 26/117 (22%), Positives = 53/117 (45%)
Query: 12 RFVKAVLPSTLRDQK--PRIPNKIVRKFSHELSDVAHITIPNGYVWQVKLKKEGRKVWFD 69
+F + +P+ D P + +KI K V ++ +G +W++++K G V+
Sbjct: 22 KFFRVYIPNQTADDMNLPLVSDKISGKPLPRKVTVKSVS--SGNIWRMEMKANGNTVFLR 79
Query: 70 DGWQDFVEAYSTFVGSLVLFEYESNSTFQAHIYDE-TACE-INYPSSNEESHTNGEE 124
DGW+ V+ + + FE++ F +Y+ + C+ + P E + EE
Sbjct: 80 DGWKKIVKDENVTEPIFLEFEFDGYGVFHFCVYEYGSMCKRMRSPMEKEVIKVDSEE 136
>TAIR|locus:2200620 [details] [associations]
symbol:AT1G26680 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=IDA] InterPro:IPR003340
Pfam:PF02362 PROSITE:PS50863 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009507 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AC006535 EMBL:BT002947 IPI:IPI00537352
PIR:G86393 RefSeq:NP_173990.2 UniGene:At.41208 HSSP:Q9FX77
ProteinModelPortal:Q84WP3 SMR:Q84WP3 PaxDb:Q84WP3 PRIDE:Q84WP3
EnsemblPlants:AT1G26680.1 GeneID:839209 KEGG:ath:AT1G26680
TAIR:At1g26680 eggNOG:NOG307425 HOGENOM:HOG000154090
InParanoid:Q84WP3 OMA:GWTSFCQ PhylomeDB:Q84WP3
ProtClustDB:CLSN2918254 Genevestigator:Q84WP3 Uniprot:Q84WP3
Length = 920
Score = 97 (39.2 bits), Expect = 0.00092, P = 0.00092
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 55 WQVKLKKEGRKVWFDDGWQDFVEAYSTFVGSLVLFEYESNSTFQAHIYDETACEINYPSS 114
W VK+ +G K+ DGW+DF A+ G +V+F E F + CEI Y +S
Sbjct: 59 WLVKM--DGLKL--TDGWEDFAFAHDLRTGDIVVFRLEGEMVFHVTALGPSCCEIQYHTS 114
Query: 115 N 115
+
Sbjct: 115 S 115
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.132 0.407 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 127 116 0.00091 102 3 11 22 0.37 31
29 0.45 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 582 (62 KB)
Total size of DFA: 145 KB (2088 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 12.11u 0.15s 12.26t Elapsed: 00:00:01
Total cpu time: 12.11u 0.15s 12.26t Elapsed: 00:00:01
Start: Fri May 10 02:11:38 2013 End: Fri May 10 02:11:39 2013