Query 040084
Match_columns 127
No_of_seqs 111 out of 579
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 07:26:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040084.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040084hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yel_A AT1G16640; CESG, protei 100.0 3.4E-34 1.2E-38 191.5 12.5 100 7-107 5-104 (104)
2 4i1k_A B3 domain-containing tr 99.9 1.4E-26 4.8E-31 163.2 14.3 99 6-105 42-143 (146)
3 1wid_A DNA-binding protein RAV 99.8 7.4E-20 2.5E-24 126.4 12.9 100 6-105 7-118 (130)
4 1yfb_A Transition state regula 82.7 3.8 0.00013 23.7 5.2 36 63-102 21-56 (59)
5 2l66_A SSO7C4, transcriptional 73.4 4.1 0.00014 22.7 3.4 23 73-95 18-40 (53)
6 2cbp_A Cucumber basic protein; 72.6 1.3 4.3E-05 28.1 1.1 33 76-109 19-54 (96)
7 1x9u_A Umecyanin; cupredoxin, 72.5 1.3 4.3E-05 29.2 1.1 26 74-99 23-50 (116)
8 1ws8_A Mavicyanin; oxidized fo 70.4 3.2 0.00011 26.9 2.7 27 73-99 22-50 (109)
9 2glw_A PHS018, 92AA long hypot 69.3 18 0.00061 22.6 7.1 68 25-95 15-88 (92)
10 1f56_A Plantacyanin; cupredoxi 65.1 3.6 0.00012 25.7 2.0 26 75-100 13-40 (91)
11 1jer_A Cucumber stellacyanin; 56.3 4.4 0.00015 27.4 1.4 27 73-99 24-52 (138)
12 1mvf_D MAZE protein, PEMI-like 48.9 21 0.00071 21.3 3.5 27 73-100 19-45 (82)
13 1oa8_A Ataxin-1; RNA binding, 46.0 4.5 0.00016 27.3 0.1 27 63-89 88-124 (133)
14 4gym_A Glyoxalase/bleomycin re 43.1 21 0.00074 22.7 3.2 18 43-60 116-133 (149)
15 2w1t_A Spovt, stage V sporulat 42.5 37 0.0013 23.9 4.4 39 63-104 13-51 (178)
16 3o27_A Putative uncharacterize 39.0 29 0.001 20.6 2.9 25 24-48 24-48 (68)
17 1nwd_B GAD, glutamate decarbox 38.1 13 0.00046 17.7 1.1 12 69-80 15-26 (28)
18 3isy_A Bsupi, intracellular pr 36.3 41 0.0014 22.0 3.7 31 84-115 31-61 (120)
19 2qcp_X Cation efflux system pr 32.6 60 0.002 19.4 3.8 23 78-100 51-74 (80)
20 2vb2_X Copper protein, cation 32.5 58 0.002 19.9 3.8 23 78-100 59-82 (88)
21 2d9r_A Conserved hypothetical 32.1 98 0.0033 19.6 7.3 76 12-92 23-102 (104)
22 3u7z_A Putative metal binding 31.8 30 0.001 22.0 2.3 34 52-93 66-99 (101)
23 2k1g_A Lipoprotein SPR; soluti 29.4 36 0.0012 22.6 2.6 29 78-107 65-93 (135)
24 2o71_A Death domain-containing 27.6 11 0.00037 24.5 -0.4 19 68-86 34-52 (115)
25 2z0t_A Putative uncharacterize 27.2 39 0.0013 21.8 2.3 11 79-89 32-42 (109)
26 2of5_A Death domain-containing 25.5 11 0.00037 24.5 -0.7 19 68-86 34-52 (114)
27 2v31_A Ubiquitin-activating en 24.4 57 0.0019 21.0 2.7 33 77-109 38-77 (112)
28 1jmc_A Protein (replication pr 24.1 1.7E+02 0.006 20.5 5.6 24 69-92 182-205 (246)
29 1qto_A Bleomycin-binding prote 23.4 59 0.002 19.7 2.6 16 43-58 104-119 (122)
30 2pjs_A AGR_C_3564P, uncharacte 23.4 60 0.002 19.3 2.6 16 43-58 101-116 (119)
31 1u7i_A Hypothetical protein; s 23.4 67 0.0023 20.2 3.0 17 43-59 117-133 (136)
32 3itw_A Protein TIOX; bleomycin 23.3 57 0.0019 20.1 2.6 18 43-60 105-122 (137)
33 3fcd_A Lyase, ORF125EGC139; la 23.1 62 0.0021 20.0 2.7 19 43-61 107-125 (134)
34 3sui_B Transient receptor pote 23.0 23 0.00078 18.1 0.4 25 59-84 11-35 (37)
35 2k75_A Uncharacterized protein 22.4 1.5E+02 0.005 18.4 5.6 29 81-109 60-92 (106)
36 2l55_A SILB,silver efflux prot 22.4 1.1E+02 0.0038 18.3 3.7 25 78-102 45-71 (82)
37 3g12_A Putative lactoylglutath 22.3 60 0.0021 20.1 2.5 17 44-60 104-120 (128)
38 3ngh_A PDZ domain-containing p 22.3 93 0.0032 18.6 3.4 47 43-89 3-52 (106)
39 3ewt_E Tumor necrosis factor r 21.3 41 0.0014 16.0 1.1 9 73-81 17-25 (25)
40 1xrk_A Bleomycin resistance pr 21.2 71 0.0024 19.4 2.7 17 43-59 104-120 (124)
41 1mi8_A DNAB intein; all beta-s 21.1 77 0.0026 20.9 3.0 24 64-90 75-98 (158)
42 1xg0_B Phycoerythrin alpha-2 c 20.9 68 0.0023 18.9 2.3 12 98-109 10-21 (67)
43 3iuw_A Activating signal coint 20.7 79 0.0027 19.3 2.7 10 81-90 38-47 (83)
44 1ecs_A Bleomycin resistance pr 20.7 72 0.0025 19.4 2.6 17 43-59 102-118 (126)
45 3e5d_A Putative glyoxalase I; 20.4 74 0.0025 18.9 2.6 15 44-58 112-126 (127)
46 2p25_A Glyoxalase family prote 20.1 73 0.0025 18.8 2.5 15 43-57 110-124 (126)
47 1v2y_A 3300001G02RIK protein; 20.1 66 0.0023 20.3 2.3 18 75-92 78-95 (105)
48 3no0_A DNA gyrase subunit A; D 20.1 27 0.00091 25.7 0.5 38 69-107 9-46 (276)
No 1
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=100.00 E-value=3.4e-34 Score=191.49 Aligned_cols=100 Identities=25% Similarity=0.485 Sum_probs=95.1
Q ss_pred CCCCCeEEEeccCCccCCCceeccHHHHHhcccCCCceEEEEcCCCCEEEEEEEEeCCEEEecccHHHHHhHhCCCCCCE
Q 040084 7 PEIPPRFVKAVLPSTLRDQKPRIPNKIVRKFSHELSDVAHITIPNGYVWQVKLKKEGRKVWFDDGWQDFVEAYSTFVGSL 86 (127)
Q Consensus 7 ~~~~p~F~k~i~~~~~~~~~L~IP~~F~~~~~~~~~~~v~L~~~~G~~W~V~l~~~~~~~~~~~GW~~Fv~~~~L~~GD~ 86 (127)
.++.|+|+|+|++++ ....|.||..|+++|++..+++|+|++++|++|+|++.+..++++|++||++||.+|+|++||+
T Consensus 5 ~~~~p~F~K~l~~~~-~~~~L~IP~~F~~~~~~~~~~~v~L~~~~G~~W~v~~~~~~~~~~l~~GW~~Fv~~~~L~~GD~ 83 (104)
T 1yel_A 5 DTGEVQFMKPFISEK-SSKSLEIPLGFNEYFPAPFPITVDLLDYSGRSWTVRMKKRGEKVFLTVGWENFVKDNNLEDGKY 83 (104)
T ss_dssp CCCCEEEEEECCHHH-HTTCEECCHHHHTTCCCCCCSEEEEEETTSCEEEEEEEEETTEEEECTTHHHHHHHHTCCTTCE
T ss_pred CCCCCCEEEEECCCC-ccceEECCHHHHHhcCccCCCEEEEECCCCCEEEEEEEEECCcEEEccChHHHHHHcCCCCCCE
Confidence 457899999999877 3599999999999999999999999999999999999998899999999999999999999999
Q ss_pred EEEEEecCcEEEEEEECCCCe
Q 040084 87 VLFEYESNSTFQAHIYDETAC 107 (127)
Q Consensus 87 lvF~~~~~~~F~V~If~~~~c 107 (127)
|+|+|+++++|+|+||++++|
T Consensus 84 lvF~~~~~~~f~V~If~~s~C 104 (104)
T 1yel_A 84 LQFIYDRDRTFYVIIYGHNMC 104 (104)
T ss_dssp EEEEECSSSEEEEEEECSSCC
T ss_pred EEEEEcCCCeEEEEEECCCCC
Confidence 999999999999999999998
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.95 E-value=1.4e-26 Score=163.18 Aligned_cols=99 Identities=17% Similarity=0.309 Sum_probs=90.9
Q ss_pred CCCCCCeEEEeccCCccCC-CceeccHHHHHhcccCCCceEEEEcCCCCEEEEEEEEeCCEEEecccHHHHHhHhCCCCC
Q 040084 6 SPEIPPRFVKAVLPSTLRD-QKPRIPNKIVRKFSHELSDVAHITIPNGYVWQVKLKKEGRKVWFDDGWQDFVEAYSTFVG 84 (127)
Q Consensus 6 ~~~~~p~F~k~i~~~~~~~-~~L~IP~~F~~~~~~~~~~~v~L~~~~G~~W~V~l~~~~~~~~~~~GW~~Fv~~~~L~~G 84 (127)
+.+..|.|+++|+++++.. ..|.||..|++.|++.....|+|+++ |+.|+|++...+++..|++||++||.+|+|++|
T Consensus 42 ~~s~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~~~i~L~~~-gk~W~v~~~~~~~~~~ls~GW~~Fv~dn~L~~G 120 (146)
T 4i1k_A 42 FEPTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLA-EKQWPVRCLYKAGRAKFSQGWYEFTLENNLGEG 120 (146)
T ss_dssp CCCSSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCCSEEEEEET-TEEEEEEEEEETTEEEECTTHHHHHHHTTCCTT
T ss_pred cCCCCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCCeEEEEEEC-CcEEEEEEEEeCCcEEECCchHHHHHHcCCCCC
Confidence 5578899999999999854 47999999999999988899999998 599999999888899999999999999999999
Q ss_pred CEEEEEEecCc--EEEEEEECCC
Q 040084 85 SLVLFEYESNS--TFQAHIYDET 105 (127)
Q Consensus 85 D~lvF~~~~~~--~F~V~If~~~ 105 (127)
|+|+|+++++. .|+|+||+.+
T Consensus 121 D~cvFeli~~~~~~f~V~IfR~~ 143 (146)
T 4i1k_A 121 DVCVFELLRTRDFVLKVTAFRVN 143 (146)
T ss_dssp CEEEEEECSSSSCEEEEEEECCC
T ss_pred CEEEEEEecCCceEEEEEEEecc
Confidence 99999999954 8999999875
No 3
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.83 E-value=7.4e-20 Score=126.43 Aligned_cols=100 Identities=21% Similarity=0.275 Sum_probs=84.8
Q ss_pred CCCCCCeEEEeccCCccC-CCceeccHHHHHhcccCCC-------ceEEEEcCCCCEEEEEEEEe--CCEEEecccHHHH
Q 040084 6 SPEIPPRFVKAVLPSTLR-DQKPRIPNKIVRKFSHELS-------DVAHITIPNGYVWQVKLKKE--GRKVWFDDGWQDF 75 (127)
Q Consensus 6 ~~~~~p~F~k~i~~~~~~-~~~L~IP~~F~~~~~~~~~-------~~v~L~~~~G~~W~V~l~~~--~~~~~~~~GW~~F 75 (127)
.....|.|.|+|+++++. ...|.||..|+++|++.+. ..++|+|+.|+.|++++... ..+++|+.||..|
T Consensus 7 ~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~F 86 (130)
T 1wid_A 7 GRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRF 86 (130)
T ss_dssp -CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHH
T ss_pred CCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHH
Confidence 344557999999999985 4789999999999887654 36889999999999999876 3578999999999
Q ss_pred HhHhCCCCCCEEEEEEecC--cEEEEEEECCC
Q 040084 76 VEAYSTFVGSLVLFEYESN--STFQAHIYDET 105 (127)
Q Consensus 76 v~~~~L~~GD~lvF~~~~~--~~F~V~If~~~ 105 (127)
|++|+|++||+|+|+++.+ ..+.|.+-++.
T Consensus 87 V~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~ 118 (130)
T 1wid_A 87 VKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRS 118 (130)
T ss_dssp HHHTTCCTTCEEEEEECCSSSCCEEEEEECCC
T ss_pred HHHcCCCCCCEEEEEEecCCCcEEEEEEEECC
Confidence 9999999999999999873 57888877665
No 4
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=82.66 E-value=3.8 Score=23.66 Aligned_cols=36 Identities=6% Similarity=-0.010 Sum_probs=26.7
Q ss_pred CCEEEecccHHHHHhHhCCCCCCEEEEEEecCcEEEEEEE
Q 040084 63 GRKVWFDDGWQDFVEAYSTFVGSLVLFEYESNSTFQAHIY 102 (127)
Q Consensus 63 ~~~~~~~~GW~~Fv~~~~L~~GD~lvF~~~~~~~F~V~If 102 (127)
.+++.|= ++..+..+|++||.+.|..+++ ...+.-+
T Consensus 21 kGqItIP---keiR~~Lgi~~Gd~l~i~~~~~-~IiL~p~ 56 (59)
T 1yfb_A 21 LGRVVIP---IELRRTLGIAEKDALEIYVDDE-KIILKKY 56 (59)
T ss_dssp TCEEECC---HHHHHHTTCCTTCEEEEEEETT-EEEEEEC
T ss_pred CCEEEeC---HHHHHHcCCCCCCEEEEEEECC-EEEEEEC
Confidence 3555555 5788999999999999999887 4444433
No 5
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=73.36 E-value=4.1 Score=22.65 Aligned_cols=23 Identities=13% Similarity=0.302 Sum_probs=20.3
Q ss_pred HHHHhHhCCCCCCEEEEEEecCc
Q 040084 73 QDFVEAYSTFVGSLVLFEYESNS 95 (127)
Q Consensus 73 ~~Fv~~~~L~~GD~lvF~~~~~~ 95 (127)
+++.+..+|+.||.+.|...++.
T Consensus 18 k~ir~~lgi~~Gd~v~i~~~~~~ 40 (53)
T 2l66_A 18 AKVRQKFQIKEGDLVKVTFDESE 40 (53)
T ss_dssp HHHHHHSCCCTTCEEEEEECSSS
T ss_pred HHHHHHcCcCCCCEEEEEEECCE
Confidence 57889999999999999998874
No 6
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=72.58 E-value=1.3 Score=28.10 Aligned_cols=33 Identities=15% Similarity=0.390 Sum_probs=23.8
Q ss_pred HhHhCCCCCCEEEEEEec--CcEEEEEEECC-CCeEE
Q 040084 76 VEAYSTFVGSLVLFEYES--NSTFQAHIYDE-TACEI 109 (127)
Q Consensus 76 v~~~~L~~GD~lvF~~~~--~~~F~V~If~~-~~ce~ 109 (127)
+.......||.|+|+|.. .++.+|. ++. ..|..
T Consensus 19 a~~~~f~vGD~L~F~y~~~~hsV~~v~-~~~y~~C~~ 54 (96)
T 2cbp_A 19 PKGKRFRAGDILLFNYNPSMHNVVVVN-QGGFSTCNT 54 (96)
T ss_dssp TTTCCBCTTCEEEEECCTTTCCEEEEC-HHHHHHTCC
T ss_pred ccCceEcCCCEEEEEecCCCCEEEEEC-HHHCCccCC
Confidence 566789999999999986 4677774 321 45654
No 7
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=72.52 E-value=1.3 Score=29.17 Aligned_cols=26 Identities=12% Similarity=0.241 Sum_probs=20.9
Q ss_pred HHHhHhCCCCCCEEEEEEec--CcEEEE
Q 040084 74 DFVEAYSTFVGSLVLFEYES--NSTFQA 99 (127)
Q Consensus 74 ~Fv~~~~L~~GD~lvF~~~~--~~~F~V 99 (127)
.-+.......||.|+|+|.. .++.+|
T Consensus 23 ~Wa~~~~f~vGD~L~F~y~~~~HsV~~V 50 (116)
T 1x9u_A 23 TWATGKTFRVGDELEFDFAAGMHDVAVV 50 (116)
T ss_dssp HHHTTCCEETTCEEEECCCTTTCCEEEE
T ss_pred hccccccCcCCCEEEEEecCCCCeEEEE
Confidence 45778889999999999985 466666
No 8
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=70.38 E-value=3.2 Score=26.86 Aligned_cols=27 Identities=22% Similarity=0.493 Sum_probs=21.8
Q ss_pred HHHHhHhCCCCCCEEEEEEecC--cEEEE
Q 040084 73 QDFVEAYSTFVGSLVLFEYESN--STFQA 99 (127)
Q Consensus 73 ~~Fv~~~~L~~GD~lvF~~~~~--~~F~V 99 (127)
..-+..+..+.||.|+|.|... ++.+|
T Consensus 22 ~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V 50 (109)
T 1ws8_A 22 AKWASSNKFHVGDSLLFNYNNKFHNVLQV 50 (109)
T ss_dssp HHHHHTSCBCTTCEEEEECCTTTCCEEEE
T ss_pred hHhhcCCcCcCCCEEEEeecCCCceEEEE
Confidence 4557888999999999999964 56666
No 9
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=69.34 E-value=18 Score=22.56 Aligned_cols=68 Identities=13% Similarity=0.074 Sum_probs=45.2
Q ss_pred CceeccHHHHHhcccCCCceEEEEc---CCCC-EEEEEEEE--eCCEEEecccHHHHHhHhCCCCCCEEEEEEecCc
Q 040084 25 QKPRIPNKIVRKFSHELSDVAHITI---PNGY-VWQVKLKK--EGRKVWFDDGWQDFVEAYSTFVGSLVLFEYESNS 95 (127)
Q Consensus 25 ~~L~IP~~F~~~~~~~~~~~v~L~~---~~G~-~W~V~l~~--~~~~~~~~~GW~~Fv~~~~L~~GD~lvF~~~~~~ 95 (127)
.+..||..+-+.++-.....+.+.. .+|. .......+ ..+.+.+- ++..+..+|+.||.+.|..++..
T Consensus 15 gqvtiP~~iR~~LgI~~GD~V~v~~i~~~~g~~~~~~~~~~v~~kGqitIP---keiR~~lgi~~Gd~l~~~~~~~~ 88 (92)
T 2glw_A 15 GRIIIPAGTRKFYGIEQGDFVEIKIVKYEGEEPKEGTFTARVGEQGSVIIP---KALRDVIGIKPGEVIEVLLLGHY 88 (92)
T ss_dssp GEEECCHHHHHHHTCCTTCEEEEEEEEEETTEEEEEEEEEECCGGGEEECC---HHHHHHHTCCTTCEEEEEEEEEE
T ss_pred CEEEecHHHHHHcCCCCCCEEEEEEEEecCCccceeEEEEEECcCceEECc---HHHHHHcCCCCCCEEEEEEeCcE
Confidence 6789999999998877766666621 2333 11111111 13455544 68899999999999999987653
No 10
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=65.12 E-value=3.6 Score=25.71 Aligned_cols=26 Identities=15% Similarity=0.255 Sum_probs=21.0
Q ss_pred HHhHhCCCCCCEEEEEEec--CcEEEEE
Q 040084 75 FVEAYSTFVGSLVLFEYES--NSTFQAH 100 (127)
Q Consensus 75 Fv~~~~L~~GD~lvF~~~~--~~~F~V~ 100 (127)
-+.......||.|+|.|.. .++.+|.
T Consensus 13 Wa~~~~f~vGD~L~F~y~~~~hsV~~v~ 40 (91)
T 1f56_A 13 GARGKSFRAGDVLVFKYIKGQHNVVAVN 40 (91)
T ss_dssp SCTTCCBCTTCEEEEECCBTTBCEEEEC
T ss_pred CcCCccEeCCCEEEEEccCCCCeEEEEC
Confidence 4667788999999999996 5677774
No 11
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=56.34 E-value=4.4 Score=27.37 Aligned_cols=27 Identities=11% Similarity=0.304 Sum_probs=21.2
Q ss_pred HHHHhHhCCCCCCEEEEEEec--CcEEEE
Q 040084 73 QDFVEAYSTFVGSLVLFEYES--NSTFQA 99 (127)
Q Consensus 73 ~~Fv~~~~L~~GD~lvF~~~~--~~~F~V 99 (127)
..-+..+..+.||.|+|.|.. .++.+|
T Consensus 24 ~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V 52 (138)
T 1jer_A 24 SQWAAGKTFRVGDSLQFNFPANAHNVHEM 52 (138)
T ss_dssp HHHHHTCCEETTCEEEECCCTTTCCCEEE
T ss_pred hhhhcCCcCcCCCEEEEeecCCCceEEEe
Confidence 445778899999999999995 356666
No 12
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=48.94 E-value=21 Score=21.30 Aligned_cols=27 Identities=7% Similarity=0.110 Sum_probs=21.7
Q ss_pred HHHHhHhCCCCCCEEEEEEecCcEEEEE
Q 040084 73 QDFVEAYSTFVGSLVLFEYESNSTFQAH 100 (127)
Q Consensus 73 ~~Fv~~~~L~~GD~lvF~~~~~~~F~V~ 100 (127)
+++++..+|..||.+.++..++. +.+.
T Consensus 19 k~~~~~lgl~~gd~v~i~~~~~~-iii~ 45 (82)
T 1mvf_D 19 ATLMQALNLNIDDEVKIDLVDGK-LIIE 45 (82)
T ss_dssp HHHHHHTTCCTTCBEEEEEETTE-EEEE
T ss_pred HHHHHHcCCCCCCEEEEEEECCE-EEEE
Confidence 68899999999999999887763 4343
No 13
>1oa8_A Ataxin-1; RNA binding, high mobility group homology, HMG, RNA-binding, dimerization; 1.7A {Homo sapiens} SCOP: b.145.1.1
Probab=46.00 E-value=4.5 Score=27.33 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=18.3
Q ss_pred CCEEEecccHHHH-----HhHh-----CCCCCCEEEE
Q 040084 63 GRKVWFDDGWQDF-----VEAY-----STFVGSLVLF 89 (127)
Q Consensus 63 ~~~~~~~~GW~~F-----v~~~-----~L~~GD~lvF 89 (127)
..-++...||..| +.-| .|++||+|+-
T Consensus 88 hPFFV~gqGWsSc~P~~T~~~ygL~C~~L~vGDVCls 124 (133)
T 1oa8_A 88 YPFFVFGQGWSSCCPERTSQLFDLPCSKLSVGDVCIS 124 (133)
T ss_dssp CCEEETTTEEEESCHHHHHHHHCCCCEECCTTCEEEE
T ss_pred CCcEEcCCcccccCHhHhhHhhCCcceecccCCEEEe
Confidence 4466679999554 3334 4678999964
No 14
>4gym_A Glyoxalase/bleomycin resistance protein/dioxygena; PSI-biology, midwest center for structural genomics, MCSG, oxidoreductase; HET: MSE; 1.56A {Conexibacter woesei}
Probab=43.10 E-value=21 Score=22.68 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=15.2
Q ss_pred ceEEEEcCCCCEEEEEEE
Q 040084 43 DVAHITIPNGYVWQVKLK 60 (127)
Q Consensus 43 ~~v~L~~~~G~~W~V~l~ 60 (127)
..+.+.||+|+.|++.+.
T Consensus 116 ~~~~f~DPDGn~iEi~~~ 133 (149)
T 4gym_A 116 YGRSFHDLDGHLWEVMWM 133 (149)
T ss_dssp EEEEEECTTCCEEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEE
Confidence 368899999999999763
No 15
>2w1t_A Spovt, stage V sporulation protein T; transcription, transcription regulation, repressor, activator, DNA-binding; 2.60A {Bacillus subtilis} PDB: 2w1t_B 2ro5_A
Probab=42.46 E-value=37 Score=23.86 Aligned_cols=39 Identities=8% Similarity=0.044 Sum_probs=30.1
Q ss_pred CCEEEecccHHHHHhHhCCCCCCEEEEEEecCcEEEEEEECC
Q 040084 63 GRKVWFDDGWQDFVEAYSTFVGSLVLFEYESNSTFQAHIYDE 104 (127)
Q Consensus 63 ~~~~~~~~GW~~Fv~~~~L~~GD~lvF~~~~~~~F~V~If~~ 104 (127)
.+++.+= ++..+..+|+.||.+.|..+++....+.-+++
T Consensus 13 kGqItIP---keiR~~LgI~~GD~l~~~~~~dG~Iil~~~~~ 51 (178)
T 2w1t_A 13 LGRVVIP---KEIRRTLRIREGDPLEIFVDRDGDVILKKYSP 51 (178)
T ss_dssp TSEEECC---HHHHHHTTCCTTCEEEEEECTTSCEEEEECCH
T ss_pred CceEEEc---HHHHHHcCcCCCCEEEEEEeCCCEEEEEECCc
Confidence 3555554 57888999999999999999876676666654
No 16
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=39.00 E-value=29 Score=20.56 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=19.3
Q ss_pred CCceeccHHHHHhcccCCCceEEEE
Q 040084 24 DQKPRIPNKIVRKFSHELSDVAHIT 48 (127)
Q Consensus 24 ~~~L~IP~~F~~~~~~~~~~~v~L~ 48 (127)
...+.||..+++.++....+.+.|.
T Consensus 24 tyYInIPaeI~kaLgIk~gD~fel~ 48 (68)
T 3o27_A 24 TFYLLIPKDIAEALDIKPDDTFILN 48 (68)
T ss_dssp CEEEEECHHHHHHTTCCTTCCEEEE
T ss_pred EEEEeCcHHHHHHhCCCCCCEEEEE
Confidence 3678999999999988876655443
No 17
>1nwd_B GAD, glutamate decarboxylase; calmodulin-peptide complex, calmodulin, dimer, binding protein/hydrolase comple; NMR {Petunia x hybrida}
Probab=38.10 E-value=13 Score=17.68 Aligned_cols=12 Identities=33% Similarity=0.692 Sum_probs=9.0
Q ss_pred cccHHHHHhHhC
Q 040084 69 DDGWQDFVEAYS 80 (127)
Q Consensus 69 ~~GW~~Fv~~~~ 80 (127)
-..|++||.+..
T Consensus 15 itawkkfveekk 26 (28)
T 1nwd_B 15 ITAWKKFVEEKK 26 (28)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHhh
Confidence 457999998753
No 18
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=36.27 E-value=41 Score=22.00 Aligned_cols=31 Identities=19% Similarity=0.447 Sum_probs=24.6
Q ss_pred CCEEEEEEecCcEEEEEEECCCCeEEecCCCC
Q 040084 84 GSLVLFEYESNSTFQAHIYDETACEINYPSSN 115 (127)
Q Consensus 84 GD~lvF~~~~~~~F~V~If~~~~ce~~~~~~~ 115 (127)
..-|.+++....+|++.|+|.+| ++.+.+++
T Consensus 31 ~~~v~l~f~Sgq~~Df~v~d~~G-~~VwrwS~ 61 (120)
T 3isy_A 31 ERAIEFQFSTGQKFELVVYDSEH-KERYRYSK 61 (120)
T ss_dssp SSCEEEEESSSCCEEEEEECTTC-CEEEETTT
T ss_pred CCcEEEEeCCCCEEEEEEECCCC-CEEEEccc
Confidence 44688888889999999999888 67775543
No 19
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=32.60 E-value=60 Score=19.42 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=17.4
Q ss_pred HhCCCCCCEEEEEEec-CcEEEEE
Q 040084 78 AYSTFVGSLVLFEYES-NSTFQAH 100 (127)
Q Consensus 78 ~~~L~~GD~lvF~~~~-~~~F~V~ 100 (127)
-.+|+.||.+.|++.. +..+.|.
T Consensus 51 l~~lk~Gd~V~F~~~~~~~~~~it 74 (80)
T 2qcp_X 51 MSEIKTGDKVAFNFVQQGNLSLLQ 74 (80)
T ss_dssp ECCCCTTCEEEEEEEEETTEEEEE
T ss_pred hhcCCCCCEEEEEEEEeCCEEEEE
Confidence 3579999999999985 4456554
No 20
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=32.47 E-value=58 Score=19.87 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=17.6
Q ss_pred HhCCCCCCEEEEEEec-CcEEEEE
Q 040084 78 AYSTFVGSLVLFEYES-NSTFQAH 100 (127)
Q Consensus 78 ~~~L~~GD~lvF~~~~-~~~F~V~ 100 (127)
-.+|+.||.+.|++.. +..+.|.
T Consensus 59 l~~lk~Gd~V~F~~~~~~~~~~it 82 (88)
T 2vb2_X 59 MSEIKTGDKVAFNFVQQGNLSLLQ 82 (88)
T ss_dssp ECCCCTTCEEEEEEEEETTEEEEE
T ss_pred hhcCCCCCEEEEEEEEeCCEEEEE
Confidence 3679999999999985 4456654
No 21
>2d9r_A Conserved hypothetical protein; MCSG, structural genomics, hypothe protein, PSI, protein structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: b.129.2.1
Probab=32.08 E-value=98 Score=19.59 Aligned_cols=76 Identities=14% Similarity=0.129 Sum_probs=50.8
Q ss_pred eEEEeccCCcc-CCCceeccHHHHHhcccCCCceEEEEc-CCCCEEEEEEEEeC-CEEEe-cccHHHHHhHhCCCCCCEE
Q 040084 12 RFVKAVLPSTL-RDQKPRIPNKIVRKFSHELSDVAHITI-PNGYVWQVKLKKEG-RKVWF-DDGWQDFVEAYSTFVGSLV 87 (127)
Q Consensus 12 ~F~k~i~~~~~-~~~~L~IP~~F~~~~~~~~~~~v~L~~-~~G~~W~V~l~~~~-~~~~~-~~GW~~Fv~~~~L~~GD~l 87 (127)
.|-..|....- ......||..-.+.++ ...+.+.. =+|..|+-.+-..+ +.++| -+ ++..++-++..||.+
T Consensus 23 ~F~a~l~~~~~~gg~fV~vP~~i~e~~G---~G~v~V~~tI~g~~~~tsL~p~g~G~~~Lpvk--~~vRka~g~~~GD~V 97 (104)
T 2d9r_A 23 EFDAIIRQVPDMDAAYVEIPFDVKTVYG---KGRVRVNATFDGYPYTGYIVRMGLPCHILGLR--QDIRRAIGKQPGDSV 97 (104)
T ss_dssp EEEEECEECTTCSCEEEECCSCHHHHHC---SSCEEEEEEETTEEEEEEEEESSTTCEEEEEC--HHHHHHHTCCTTSEE
T ss_pred EEEEEEEEecCCCCeEEEeChHHHHhcC---CCceEEEEEECCEEEEEEEEECCCCcEEEEec--HHHHHHcCCCCCCEE
Confidence 46666654211 1246789987666666 24444442 36899999887754 45444 33 789999999999999
Q ss_pred EEEEe
Q 040084 88 LFEYE 92 (127)
Q Consensus 88 vF~~~ 92 (127)
.+++.
T Consensus 98 ~V~L~ 102 (104)
T 2d9r_A 98 YVTLL 102 (104)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88764
No 22
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=31.79 E-value=30 Score=22.02 Aligned_cols=34 Identities=9% Similarity=0.064 Sum_probs=24.4
Q ss_pred CCEEEEEEEEeCCEEEecccHHHHHhHhCCCCCCEEEEEEec
Q 040084 52 GYVWQVKLKKEGRKVWFDDGWQDFVEAYSTFVGSLVLFEYES 93 (127)
Q Consensus 52 G~~W~V~l~~~~~~~~~~~GW~~Fv~~~~L~~GD~lvF~~~~ 93 (127)
+.-|.... ++.+.-. =|.++.|+.||.+.|+|..
T Consensus 66 ~~yW~~~v---ng~~~~~-----Ga~~~~v~dGD~i~~~~t~ 99 (101)
T 3u7z_A 66 QQWWCITK---GGEQVNT-----SADQTPVSDGDAFELTLKE 99 (101)
T ss_dssp TEEEEEEE---TTEECCS-----CGGGCBCCTTCEEEEEEEE
T ss_pred CCEEEEEE---CCEEhhh-----chhheEecCCCEEEEEEec
Confidence 45577644 4554432 3789999999999999875
No 23
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=29.45 E-value=36 Score=22.56 Aligned_cols=29 Identities=24% Similarity=0.243 Sum_probs=21.0
Q ss_pred HhCCCCCCEEEEEEecCcEEEEEEECCCCe
Q 040084 78 AYSTFVGSLVLFEYESNSTFQAHIYDETAC 107 (127)
Q Consensus 78 ~~~L~~GD~lvF~~~~~~~F~V~If~~~~c 107 (127)
...|+.||++.|.- +...-.|=||-.++.
T Consensus 65 ~~~l~pGDLvFf~~-~~~~~HVGIyiG~g~ 93 (135)
T 2k1g_A 65 RSNLRTGDLVLFRA-GSTGRHVGIYIGNNQ 93 (135)
T ss_dssp GGGCCTTEEEEEEE-TTTEEEEEEEEETTE
T ss_pred HHHccCCcEEEECC-CCCCeEEEEEecCCE
Confidence 35799999999964 444557888877664
No 24
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=27.61 E-value=11 Score=24.52 Aligned_cols=19 Identities=11% Similarity=0.284 Sum_probs=16.3
Q ss_pred ecccHHHHHhHhCCCCCCE
Q 040084 68 FDDGWQDFVEAYSTFVGSL 86 (127)
Q Consensus 68 ~~~GW~~Fv~~~~L~~GD~ 86 (127)
+...|+.|+...+|.++|+
T Consensus 34 LG~~Wk~LAR~LGlse~dI 52 (115)
T 2o71_A 34 LGPEWEPMVLSLGLSQTDI 52 (115)
T ss_dssp CCTTHHHHHHHTTCCHHHH
T ss_pred HhhhHHHHHHHcCCCHHHH
Confidence 5789999999999988764
No 25
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=27.17 E-value=39 Score=21.75 Aligned_cols=11 Identities=18% Similarity=0.470 Sum_probs=9.7
Q ss_pred hCCCCCCEEEE
Q 040084 79 YSTFVGSLVLF 89 (127)
Q Consensus 79 ~~L~~GD~lvF 89 (127)
..++.||.++|
T Consensus 32 ~~ikvGD~I~f 42 (109)
T 2z0t_A 32 RQIKPGDIIIF 42 (109)
T ss_dssp GGCCTTCEEEE
T ss_pred hcCCCCCEEEE
Confidence 46799999999
No 26
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=25.53 E-value=11 Score=24.50 Aligned_cols=19 Identities=11% Similarity=0.284 Sum_probs=16.2
Q ss_pred ecccHHHHHhHhCCCCCCE
Q 040084 68 FDDGWQDFVEAYSTFVGSL 86 (127)
Q Consensus 68 ~~~GW~~Fv~~~~L~~GD~ 86 (127)
+...|+.|+...+|.++|+
T Consensus 34 lG~~Wk~LAR~LGlse~dI 52 (114)
T 2of5_A 34 LGPEWEPMVLSLGLSQTDI 52 (114)
T ss_dssp CCSTHHHHHHTTTCCHHHH
T ss_pred HhhhHHHHHHHcCCCHHHH
Confidence 5789999999999988764
No 27
>2v31_A Ubiquitin-activating enzyme E1 X; ligase, phosphorylation, catalytic domain, heteronuclear first catalytic cysteine half-domain, E1 protein; NMR {Mus musculus}
Probab=24.43 E-value=57 Score=21.03 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=24.6
Q ss_pred hHhCCCCCCEEEEEEecC-------cEEEEEEECCCCeEE
Q 040084 77 EAYSTFVGSLVLFEYESN-------STFQAHIYDETACEI 109 (127)
Q Consensus 77 ~~~~L~~GD~lvF~~~~~-------~~F~V~If~~~~ce~ 109 (127)
..|+|+.||.+.|.-+.. ..++|++-++..-++
T Consensus 38 ~~H~l~dGD~V~FseV~GM~eLN~~~p~~i~v~~p~tf~I 77 (112)
T 2v31_A 38 ARHGFETGDFVSFSEVQGMIQLNGCQPMEIKVLGPYTFSI 77 (112)
T ss_dssp CCCCCCTTCEEEECSEESCCTTGGGCCEEEEECSSSEEEE
T ss_pred CccCCcCCCEEEEEeeEcchhhCCCcceEEEEcCCCEEEE
Confidence 679999999999976643 257888777655444
No 28
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=24.12 E-value=1.7e+02 Score=20.45 Aligned_cols=24 Identities=4% Similarity=0.124 Sum_probs=19.6
Q ss_pred cccHHHHHhHhCCCCCCEEEEEEe
Q 040084 69 DDGWQDFVEAYSTFVGSLVLFEYE 92 (127)
Q Consensus 69 ~~GW~~Fv~~~~L~~GD~lvF~~~ 92 (127)
..=|.+.|.......|++|+|...
T Consensus 182 ~tLWg~~a~~~~~~~~~vv~i~~~ 205 (246)
T 1jmc_A 182 ATLWGEDADKFDGSRQPVLAIKGA 205 (246)
T ss_dssp EEEEHHHHHHCCCTTCCEEEEEEE
T ss_pred EEEEchhhhhcccCCCCEEEEEEE
Confidence 445999999988999999887554
No 29
>1qto_A Bleomycin-binding protein; arm-exchange, antibiotic inhibitor; 1.50A {Streptomyces verticillus} SCOP: d.32.1.2 PDB: 1jie_A* 1jif_A
Probab=23.45 E-value=59 Score=19.72 Aligned_cols=16 Identities=13% Similarity=0.108 Sum_probs=13.0
Q ss_pred ceEEEEcCCCCEEEEE
Q 040084 43 DVAHITIPNGYVWQVK 58 (127)
Q Consensus 43 ~~v~L~~~~G~~W~V~ 58 (127)
..+.+.||+|+.|.+.
T Consensus 104 ~~~~~~DPdG~~iel~ 119 (122)
T 1qto_A 104 REFAVRDPAGNCVHFT 119 (122)
T ss_dssp EEEEEECTTSCEEEEE
T ss_pred cEEEEECCCCCEEEEe
Confidence 4678999999998874
No 30
>2pjs_A AGR_C_3564P, uncharacterized protein ATU1953; glyoxalase/bleomycin resistance protein/dioxygenase superfamily, structural genomics; 1.85A {Agrobacterium tumefaciens str} SCOP: d.32.1.2
Probab=23.37 E-value=60 Score=19.26 Aligned_cols=16 Identities=13% Similarity=0.150 Sum_probs=13.4
Q ss_pred ceEEEEcCCCCEEEEE
Q 040084 43 DVAHITIPNGYVWQVK 58 (127)
Q Consensus 43 ~~v~L~~~~G~~W~V~ 58 (127)
..+.+.||+|+.|.+.
T Consensus 101 ~~~~~~DPdG~~iel~ 116 (119)
T 2pjs_A 101 QRLFLRDPFGKLINIL 116 (119)
T ss_dssp EEEEEECTTSCEEEEE
T ss_pred EEEEEECCCCCEEEEE
Confidence 5788999999999874
No 31
>1u7i_A Hypothetical protein; structural genomics, PA1358, PSI, PROT structure initiative; HET: MSE; 1.40A {Pseudomonas aeruginosa} SCOP: d.32.1.7
Probab=23.35 E-value=67 Score=20.20 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=14.4
Q ss_pred ceEEEEcCCCCEEEEEE
Q 040084 43 DVAHITIPNGYVWQVKL 59 (127)
Q Consensus 43 ~~v~L~~~~G~~W~V~l 59 (127)
..+.++||.|..|.+..
T Consensus 117 ~~~~~~Dp~G~~w~l~~ 133 (136)
T 1u7i_A 117 RFAWLADRFGVSWQLNL 133 (136)
T ss_dssp EEEEEECTTSCEEEEEE
T ss_pred eEEEEECCCCCEEEEEe
Confidence 45789999999999875
No 32
>3itw_A Protein TIOX; bleomycin resistance fold, bisintercalator, solvent-exposed residue, thiocoraline, protein binding, peptide binding Pro; 2.15A {Micromonospora SP}
Probab=23.35 E-value=57 Score=20.11 Aligned_cols=18 Identities=11% Similarity=0.233 Sum_probs=15.1
Q ss_pred ceEEEEcCCCCEEEEEEE
Q 040084 43 DVAHITIPNGYVWQVKLK 60 (127)
Q Consensus 43 ~~v~L~~~~G~~W~V~l~ 60 (127)
..+.+.||+|+.|.+.-.
T Consensus 105 ~~~~~~DPdG~~iel~~~ 122 (137)
T 3itw_A 105 RQYLVRDLEGHLWEFTRH 122 (137)
T ss_dssp EEEEEECSSSCEEEEEEC
T ss_pred EEEEEECCCCCEEEEEEE
Confidence 578899999999998753
No 33
>3fcd_A Lyase, ORF125EGC139; lactoylglutathione lyase, YECM, PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.92A {Uncultured bacterium} SCOP: d.32.1.0
Probab=23.08 E-value=62 Score=20.04 Aligned_cols=19 Identities=11% Similarity=0.167 Sum_probs=15.8
Q ss_pred ceEEEEcCCCCEEEEEEEE
Q 040084 43 DVAHITIPNGYVWQVKLKK 61 (127)
Q Consensus 43 ~~v~L~~~~G~~W~V~l~~ 61 (127)
..+.+.||+|+.|.+.-..
T Consensus 107 ~~~~~~DPdG~~iel~~~~ 125 (134)
T 3fcd_A 107 REFQVRMPDGDWLNFTAPL 125 (134)
T ss_dssp EEEEEECTTSCEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEEcc
Confidence 4788999999999987654
No 34
>3sui_B Transient receptor potential cation channel subfa member 1; calmodulin, calcium-calmodulin, TRPV1, TRPV1 C-terminus, CAL complex, thermosensor; 1.95A {Rattus norvegicus}
Probab=23.05 E-value=23 Score=18.12 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=14.2
Q ss_pred EEEeCCEEEecccHHHHHhHhCCCCC
Q 040084 59 LKKEGRKVWFDDGWQDFVEAYSTFVG 84 (127)
Q Consensus 59 l~~~~~~~~~~~GW~~Fv~~~~L~~G 84 (127)
+.-+.+++. .+.|+.|+..--|++|
T Consensus 11 fslrsgrvs-grnwknf~lvpllrd~ 35 (37)
T 3sui_B 11 FSLRSGRVS-GRNWKNFALVPLLRDA 35 (37)
T ss_pred eEeeccccc-cccccccchhhhhhcc
Confidence 333334433 6778888766555554
No 35
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=22.44 E-value=1.5e+02 Score=18.40 Aligned_cols=29 Identities=14% Similarity=0.063 Sum_probs=17.5
Q ss_pred CCCCCEEEEEEe----cCcEEEEEEECCCCeEE
Q 040084 81 TFVGSLVLFEYE----SNSTFQAHIYDETACEI 109 (127)
Q Consensus 81 L~~GD~lvF~~~----~~~~F~V~If~~~~ce~ 109 (127)
|++||++.++-- -+..+++.|=+.+-.++
T Consensus 60 l~~Gdvv~i~ng~v~~~~g~~~L~v~~~~~I~~ 92 (106)
T 2k75_A 60 LQDSDVVRIDNARVAQFNGYLSLSVGDSSRIES 92 (106)
T ss_dssp CCTTEEEEEEEEEEEEETTEEEEEECTTSEEEE
T ss_pred cCCCCEEEEEeeEEeEECCEEEEEECCcEEEEE
Confidence 999999998721 13445555554443443
No 36
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=22.43 E-value=1.1e+02 Score=18.32 Aligned_cols=25 Identities=12% Similarity=0.046 Sum_probs=18.8
Q ss_pred HhCCCCCCEEEEEEec-Cc-EEEEEEE
Q 040084 78 AYSTFVGSLVLFEYES-NS-TFQAHIY 102 (127)
Q Consensus 78 ~~~L~~GD~lvF~~~~-~~-~F~V~If 102 (127)
-.+|+.||.+.|++.. +. .+.|.=.
T Consensus 45 l~~lk~Gd~V~F~~~~~~~g~~~it~i 71 (82)
T 2l55_A 45 PQGLKAGDRVAFSFRLDPHGMATLVTV 71 (82)
T ss_dssp CSSCSTTCEEEEEEEEETTTEEEEEEE
T ss_pred hhcCCCCCEEEEEEEECCCCeEEEEEE
Confidence 4679999999999985 33 6766644
No 37
>3g12_A Putative lactoylglutathione lyase; glyoxalase, bleomycin resistance, PSI-2, NYSGXRC, structural genomics; 2.58A {Bdellovibrio bacteriovorus HD100}
Probab=22.28 E-value=60 Score=20.10 Aligned_cols=17 Identities=18% Similarity=0.075 Sum_probs=13.5
Q ss_pred eEEEEcCCCCEEEEEEE
Q 040084 44 VAHITIPNGYVWQVKLK 60 (127)
Q Consensus 44 ~v~L~~~~G~~W~V~l~ 60 (127)
.+.+.||+|+.|.+.-.
T Consensus 104 ~~~~~DPdGn~iel~~~ 120 (128)
T 3g12_A 104 KAIVLDPDGHSIELCEL 120 (128)
T ss_dssp EEEEECTTCCEEEEEC-
T ss_pred EEEEECCCCCEEEEEEe
Confidence 48899999999988653
No 38
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=22.26 E-value=93 Score=18.65 Aligned_cols=47 Identities=15% Similarity=0.012 Sum_probs=24.2
Q ss_pred ceEEEEcCCCCEEEEEEEEeC--CEEEe-cccHHHHHhHhCCCCCCEEEE
Q 040084 43 DVAHITIPNGYVWQVKLKKEG--RKVWF-DDGWQDFVEAYSTFVGSLVLF 89 (127)
Q Consensus 43 ~~v~L~~~~G~~W~V~l~~~~--~~~~~-~~GW~~Fv~~~~L~~GD~lvF 89 (127)
..+.|.-..|..|-+.+.... ..+++ .--...-+..-+|+.||.++=
T Consensus 3 r~v~l~~~~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ 52 (106)
T 3ngh_A 3 RESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLR 52 (106)
T ss_dssp EEEEEECCTTCCCCCEEECCTTCCSCEEECCCTTSHHHHTTCCTTCEEEE
T ss_pred EEEEEEeCCCCeeCEEEEEEeCCCCEEEEEeCCCCHHHHcCCCCCCEEEE
Confidence 345665555555655554321 11222 111223456667999998864
No 39
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=21.26 E-value=41 Score=15.97 Aligned_cols=9 Identities=22% Similarity=0.409 Sum_probs=6.2
Q ss_pred HHHHhHhCC.
Q 040084 73 QDFVEAYST. 81 (127)
Q Consensus 73 ~~Fv~~~~L. 81 (127)
++||+.|++
T Consensus 17 k~fvR~~gi. 25 (25)
T 3ewt_E 17 KGFVRKNGVx 26 (26)
T ss_pred HHHHHHcCC.
Confidence 567777764
No 40
>1xrk_A Bleomycin resistance protein; arm exchange, ligand binding protein, thermostable mutant, antibiotic inhibitor; HET: BLM; 1.50A {Streptoalloteichus hindustanus} SCOP: d.32.1.2 PDB: 2zhp_A* 1byl_A
Probab=21.22 E-value=71 Score=19.38 Aligned_cols=17 Identities=12% Similarity=0.038 Sum_probs=13.7
Q ss_pred ceEEEEcCCCCEEEEEE
Q 040084 43 DVAHITIPNGYVWQVKL 59 (127)
Q Consensus 43 ~~v~L~~~~G~~W~V~l 59 (127)
..+.+.||+|+.|.+.-
T Consensus 104 ~~~~~~DPdG~~iel~~ 120 (124)
T 1xrk_A 104 REFALRDPAGNCVHFVA 120 (124)
T ss_dssp EEEEEECTTCCEEEEEE
T ss_pred CEEEEECCCCCEEEEEE
Confidence 46788999999998754
No 41
>1mi8_A DNAB intein; all beta-strands, hydrolase; 2.00A {Synechocystis SP} SCOP: b.86.1.2
Probab=21.08 E-value=77 Score=20.86 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=18.4
Q ss_pred CEEEecccHHHHHhHhCCCCCCEEEEE
Q 040084 64 RKVWFDDGWQDFVEAYSTFVGSLVLFE 90 (127)
Q Consensus 64 ~~~~~~~GW~~Fv~~~~L~~GD~lvF~ 90 (127)
..++-..||+ .+-.|+.||.+...
T Consensus 75 H~~~t~~gw~---~a~~L~~GD~v~~~ 98 (158)
T 1mi8_A 75 HRFLTIDGWK---RLDELSLKEHIALP 98 (158)
T ss_dssp CEEEETTEEE---EGGGCCTTCEEEEE
T ss_pred ceEEeccCCE---EhhhCCCCCEEEec
Confidence 4555578994 67789999999864
No 42
>1xg0_B Phycoerythrin alpha-2 chain; light-harvesting protein, cryptophyte, photosynthesis; HET: LYZ DBV PEB; 0.97A {Rhodomonas SP} SCOP: d.184.1.1 PDB: 1qgw_B* 1xf6_B*
Probab=20.91 E-value=68 Score=18.87 Aligned_cols=12 Identities=25% Similarity=0.589 Sum_probs=10.7
Q ss_pred EEEEECCCCeEE
Q 040084 98 QAHIYDETACEI 109 (127)
Q Consensus 98 ~V~If~~~~ce~ 109 (127)
.|.|||.-||.+
T Consensus 10 vItiFDhRGC~r 21 (67)
T 1xg0_B 10 VITIFDHRGCSR 21 (67)
T ss_dssp EEEEEECTTCSS
T ss_pred eEEEecccccCC
Confidence 689999999984
No 43
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=20.68 E-value=79 Score=19.33 Aligned_cols=10 Identities=30% Similarity=0.624 Sum_probs=9.1
Q ss_pred CCCCCEEEEE
Q 040084 81 TFVGSLVLFE 90 (127)
Q Consensus 81 L~~GD~lvF~ 90 (127)
++.||.|+|.
T Consensus 38 ~~vGD~l~l~ 47 (83)
T 3iuw_A 38 FQVGDILILE 47 (83)
T ss_dssp CCTTCEEEEE
T ss_pred CCCCCEEEEE
Confidence 7999999995
No 44
>1ecs_A Bleomycin resistance protein; arm-exchange, antibiotic inhibitor; HET: PG4; 1.70A {Klebsiella pneumoniae} SCOP: d.32.1.2 PDB: 1ewj_A* 1niq_B* 1mh6_A
Probab=20.66 E-value=72 Score=19.36 Aligned_cols=17 Identities=18% Similarity=0.343 Sum_probs=14.1
Q ss_pred ceEEEEcCCCCEEEEEE
Q 040084 43 DVAHITIPNGYVWQVKL 59 (127)
Q Consensus 43 ~~v~L~~~~G~~W~V~l 59 (127)
..+.+.||+|+.|.+.-
T Consensus 102 ~~~~~~DPdG~~iel~~ 118 (126)
T 1ecs_A 102 TMAALVDPDGTLLRLIQ 118 (126)
T ss_dssp EEEEEECTTSCEEEEEE
T ss_pred EEEEEECCCCCEEEEec
Confidence 56789999999998864
No 45
>3e5d_A Putative glyoxalase I; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 2.70A {Listeria monocytogenes str}
Probab=20.39 E-value=74 Score=18.90 Aligned_cols=15 Identities=13% Similarity=0.224 Sum_probs=12.4
Q ss_pred eEEEEcCCCCEEEEE
Q 040084 44 VAHITIPNGYVWQVK 58 (127)
Q Consensus 44 ~v~L~~~~G~~W~V~ 58 (127)
.+.+.||+|+.|.+.
T Consensus 112 ~~~~~DPdG~~iel~ 126 (127)
T 3e5d_A 112 ESVVLDPEGNRIEIT 126 (127)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred EEEEECCCCCEEEEe
Confidence 578899999998874
No 46
>2p25_A Glyoxalase family protein; structural genomics, MCSG, PSI-2, protein struct initiative, midwest center for structural genomics, oxidore; 1.70A {Enterococcus faecalis}
Probab=20.09 E-value=73 Score=18.79 Aligned_cols=15 Identities=13% Similarity=0.335 Sum_probs=12.3
Q ss_pred ceEEEEcCCCCEEEE
Q 040084 43 DVAHITIPNGYVWQV 57 (127)
Q Consensus 43 ~~v~L~~~~G~~W~V 57 (127)
..+.+.||+|+.|.+
T Consensus 110 ~~~~~~DPdG~~iel 124 (126)
T 2p25_A 110 KMTFFFDPDGLPLEL 124 (126)
T ss_dssp EEEEEECTTCCEEEE
T ss_pred EEEEEECCCCCEEEe
Confidence 457789999999876
No 47
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=20.09 E-value=66 Score=20.31 Aligned_cols=18 Identities=17% Similarity=0.043 Sum_probs=15.0
Q ss_pred HHhHhCCCCCCEEEEEEe
Q 040084 75 FVEAYSTFVGSLVLFEYE 92 (127)
Q Consensus 75 Fv~~~~L~~GD~lvF~~~ 92 (127)
=..+|+++.|+.|.|.+-
T Consensus 78 tL~dygI~~g~~l~lv~~ 95 (105)
T 1v2y_A 78 KLRDYGIRNRDEVSFIKK 95 (105)
T ss_dssp BHHHHTCCSSEEEEEEEC
T ss_pred CHHHcCCCCCCEEEEEeh
Confidence 467899999999988664
No 48
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=20.06 E-value=27 Score=25.71 Aligned_cols=38 Identities=16% Similarity=-0.051 Sum_probs=30.7
Q ss_pred cccHHHHHhHhCCCCCCEEEEEEecCcEEEEEEECCCCe
Q 040084 69 DDGWQDFVEAYSTFVGSLVLFEYESNSTFQAHIYDETAC 107 (127)
Q Consensus 69 ~~GW~~Fv~~~~L~~GD~lvF~~~~~~~F~V~If~~~~c 107 (127)
.+||-+=++-|.+ +||.++..+..+.+=.+.+|...|-
T Consensus 9 ~~Gwir~~~g~~~-~gD~~~~~~~~~t~~~ll~fT~~G~ 46 (276)
T 3no0_A 9 QDGSIIPVEELPL-EKAPVVNILRVPFTEGLFLVSNRGR 46 (276)
T ss_dssp TTSEEEEGGGCCS-SCCCEEEEEEEETTSCEEEEETTSE
T ss_pred CCceeeeccCCCC-CCCeEEEEEEECCCCEEEEEcCCCe
Confidence 7889888888887 8999999988876666777777664
Done!