BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040085
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 134/303 (44%), Gaps = 19/303 (6%)
Query: 9 EIPFLDFSGEVLDDFTDERWREMC-GQVRDALETHGFFVMYHDKIPKSLREDMFKAMNAL 67
++P +D DD E+ RE C +++ A G + + IP L E + KA
Sbjct: 45 QVPTIDLKNIESDD---EKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEF 101
Query: 68 FDLPEETKSKYASSKPYRSYMGESPAVPLHQSFGIDNEPGIDVDTTAQAFTNL-MWPQGN 126
F L E K KYA+ + G + + S ++ E + +L +WP+
Sbjct: 102 FSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTP 161
Query: 127 PSFCETLKSVTSKMLELNYTILKMVFESFGTGKLYVP-----HIQGSITLFRLMK---YK 178
+ E S +K L L T VF++ G P + G L MK Y
Sbjct: 162 SDYIEA-TSEYAKCLRLLAT---KVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYP 217
Query: 179 VPPNNESAVGLIPHTDKNVLSILCENNVQGLEILNKDGVYVPVGVPDNASVVIVGDTLKA 238
P E A+G+ HTD + L+ + N V GL++ + VPD+ V+ +GDTL+
Sbjct: 218 KCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSI-VMHIGDTLEI 276
Query: 239 WSNGRLKAPKHRVMMSGNKERYSFGSFSM-PKEGVATEVPNELVDDDHPLVYRPFKFSEF 297
SNG+ K+ HR +++ K R S+ F PK+ + + E+V + P + P F++
Sbjct: 277 LSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQH 336
Query: 298 MAY 300
+ +
Sbjct: 337 IEH 339
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 134/303 (44%), Gaps = 19/303 (6%)
Query: 9 EIPFLDFSGEVLDDFTDERWREMC-GQVRDALETHGFFVMYHDKIPKSLREDMFKAMNAL 67
++P +D DD E+ RE C +++ A G + + IP L E + KA
Sbjct: 46 QVPTIDLKNIESDD---EKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEF 102
Query: 68 FDLPEETKSKYASSKPYRSYMGESPAVPLHQSFGIDNEPGIDVDTTAQAFTNL-MWPQGN 126
F L E K KYA+ + G + + S ++ E + +L +WP+
Sbjct: 103 FSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTP 162
Query: 127 PSFCETLKSVTSKMLELNYTILKMVFESFGTGKLYVP-----HIQGSITLFRLMK---YK 178
+ E S +K L L T VF++ G P + G L MK Y
Sbjct: 163 SDYIEA-TSEYAKCLRLLAT---KVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYP 218
Query: 179 VPPNNESAVGLIPHTDKNVLSILCENNVQGLEILNKDGVYVPVGVPDNASVVIVGDTLKA 238
P E A+G+ HTD + L+ + N V GL++ + VPD+ V+ +GDTL+
Sbjct: 219 KCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSI-VMHIGDTLEI 277
Query: 239 WSNGRLKAPKHRVMMSGNKERYSFGSFSM-PKEGVATEVPNELVDDDHPLVYRPFKFSEF 297
SNG+ K+ HR +++ K R S+ F PK+ + + E+V + P + P F++
Sbjct: 278 LSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQH 337
Query: 298 MAY 300
+ +
Sbjct: 338 IEH 340
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 115/270 (42%), Gaps = 44/270 (16%)
Query: 22 DFTDERWREMCGQVRDALETHGFFVMYHDKIPKSLREDMFKAMNALFDLPEETKSKYASS 81
DFT R+ + G + E +GF V+ + ++ + + A F LP ETK +YA
Sbjct: 18 DFT--RFAQELGA---SFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGV 72
Query: 82 KPYRSYMGESPAVPLHQSFGIDNEPGIDVDTTAQAF----------------TNLMWPQG 125
K G +P FG++ G D + + + +WP
Sbjct: 73 K-----GGARGYIP----FGVETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAE 123
Query: 126 NPSFCE-------TLKSVTSKMLELNYTILKMVFESFGTGKLYVPHIQGSITLFRLMKYK 178
P+F +L K+LE T LK+ + F P +Q ++ RL+ Y
Sbjct: 124 IPAFKHDVSWLYNSLDGXGGKVLEAIATYLKLERDFFK------PTVQDGNSVLRLLHYP 177
Query: 179 VPPNNESAVGLIPHTDKNVLSILCENNVQGLEILNKDGVYVPVGVPDNASVVIVGDTLKA 238
P + + V H D N +++L GLE+L++DG ++P+ P V+ +GD L+
Sbjct: 178 PIPKDATGVRAGAHGDINTITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLER 237
Query: 239 WSNGRLKAPKHRVMMSGNKERYSFGSFSMP 268
+N L + HRV ++ ER +S P
Sbjct: 238 LTNNVLPSTVHRV-VNPPPERRGVPRYSTP 266
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 132/303 (43%), Gaps = 19/303 (6%)
Query: 9 EIPFLDFSGEVLDDFTDERWREMC-GQVRDALETHGFFVMYHDKIPKSLREDMFKAMNAL 67
++P +D DD E+ RE C +++ A G + + IP L E + KA
Sbjct: 46 QVPTIDLKNIESDD---EKIRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEF 102
Query: 68 FDLPEETKSKYASSKPYRSYMGESPAVPLHQSFGIDNEPGIDVDTTAQAFTNL-MWPQGN 126
F L E K KYA+ + G + + S ++ E + +L +WP+
Sbjct: 103 FSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTP 162
Query: 127 PSFCETLKSVTSKMLELNYTILKMVFESFGTGKLYVPH--------IQGSITLFRLMKYK 178
+ E S +K L L T VF++ G P ++ + ++ Y
Sbjct: 163 SDYIEAT-SEYAKCLRLLAT---KVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYP 218
Query: 179 VPPNNESAVGLIPHTDKNVLSILCENNVQGLEILNKDGVYVPVGVPDNASVVIVGDTLKA 238
P E A+G+ HTD + L+ + N V GL++ + VPD+ V +GDTL+
Sbjct: 219 KCPQPELALGVEAHTDVSALTFILHNXVPGLQLFYEGKWVTAKCVPDSI-VXHIGDTLEI 277
Query: 239 WSNGRLKAPKHRVMMSGNKERYSFGSFSM-PKEGVATEVPNELVDDDHPLVYRPFKFSEF 297
SNG+ K+ HR +++ K R S+ F PK+ + + E V + P + P F++
Sbjct: 278 LSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEXVSVESPAKFPPRTFAQH 337
Query: 298 MAY 300
+ +
Sbjct: 338 IEH 340
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 125/291 (42%), Gaps = 31/291 (10%)
Query: 35 VRDALETHGFFVMYHDKIPKSLREDMFKAMNALFDLPEETKSK-YASSKPYRSYMGESPA 93
++DA E GFF + + IP+ + + + K + E + K +SK E
Sbjct: 24 IKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFKELVASKALEGVQAEVTD 83
Query: 94 VPLHQSFGIDNEPGIDVDTTAQAFTNLMWPQGNPSFCETLKSVTSKMLELNYTILKMVFE 153
+F + + P ++ P + + E + ++ +L +L ++ E
Sbjct: 84 XDWESTFFLKHLPISNISEV---------PDLDEEYREVXRDFAKRLEKLAEELLDLLCE 134
Query: 154 SFGTGKLYVPHI----QGSITLFRLMKYKVPPNNESAVGLIPHTDKNVLSILCENN-VQG 208
+ G K Y+ + +G ++ Y P + GL HTD + +L +++ V G
Sbjct: 135 NLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSG 194
Query: 209 LEILNKDGVYVPVGVPDNASVVIVGDTLKAWSNGRLKAPKHRVMMSGNKERYSFGSFSMP 268
L++L KDG ++ V ++ VV +GD L+ +NG+ K+ HRV+ + R S SF P
Sbjct: 195 LQLL-KDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDGARXSLASFYNP 253
Query: 269 KEGVATEVPNELVD---DDHPLVYRPFKFSEFMAYFVNNISDDALEIYAGI 316
LV+ +++ VY F F DD ++YAG+
Sbjct: 254 GSDAVIYPAPALVEKEAEENKQVYPKFVF------------DDYXKLYAGL 292
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 170 TLFRLMKYKVPPNNES--AVGLIPHTDKNVLSILCENNVQGLEILNKDGVYVPVGVPDNA 227
TL R++ Y +E A+ H D N++++L N GL++ KDG ++ V
Sbjct: 150 TLLRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKAKDGSWLDVPSDFGN 209
Query: 228 SVVIVGDTLKAWSNGRLKAPKHRVM----MSGNKERYSFGSFSMPKEGV 272
++ +GD L+ S+G + HRV+ K R S F P V
Sbjct: 210 IIINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHPHPSV 258
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 68/160 (42%), Gaps = 17/160 (10%)
Query: 121 MWPQ--GNPSFCETLKSVTSKMLELNYTILKMVFESFGTGK-LYVPHIQGSITLFRLMKY 177
+WP +P F + + + L+ +LK + G + + H + TL ++
Sbjct: 128 VWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLI 187
Query: 178 KVP---PNNESAVGLIP---------HTDKNVLSILCENNVQGLEILNKDGVYVPVGVPD 225
+ P P E+A+ H D +++++L ++NVQ L++ G Y + D
Sbjct: 188 RYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAG-YQDIEADD 246
Query: 226 NASVVIVGDTLKAWSNGRLKAPKHRVMMSGNKERYSFGSF 265
++ G + +N KAP HRV N ER S F
Sbjct: 247 TGYLINCGSYMAHLTNNYYKAPIHRVKWV-NAERQSLPFF 285
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 68/160 (42%), Gaps = 17/160 (10%)
Query: 121 MWPQ--GNPSFCETLKSVTSKMLELNYTILKMVFESFGTGK-LYVPHIQGSITLFRLMKY 177
+WP +P F + + + L+ +LK + G + + H + TL ++
Sbjct: 128 VWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLI 187
Query: 178 KVP---PNNESAVGLIP---------HTDKNVLSILCENNVQGLEILNKDGVYVPVGVPD 225
+ P P E+A+ H D +++++L ++NVQ L++ G Y + D
Sbjct: 188 RYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAG-YQDIEADD 246
Query: 226 NASVVIVGDTLKAWSNGRLKAPKHRVMMSGNKERYSFGSF 265
++ G + +N KAP HRV N ER S F
Sbjct: 247 TGYLINCGSYMAHLTNNYYKAPIHRVKWV-NAERQSLPFF 285
>pdb|3VHJ|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of Bfpc
Length = 172
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 11/95 (11%)
Query: 102 IDNEPGIDVDTTAQAFTNLMWPQGNPSFCETLKSVTSKMLELNYTILKMVF-----ESFG 156
+ N G+ V + Q NL+W G+ ET +K L L + L V E F
Sbjct: 2 VKNNLGVAVIGSKQYAVNLLW--GSSQDTETTNQALNKSLTLXSSKLYSVIGRFQGEQFA 59
Query: 157 TGKLYVPHIQGSITLFRLMKYKVPPNNESAVGLIP 191
G + H +G +TL + + + S GL P
Sbjct: 60 VGDKNIGHKRGQVTLLSAIDF----DGSSFCGLFP 90
>pdb|1PQW|A Chain A, Putative Enoyl Reductase Domain Of Polyketide Synthase
pdb|1PQW|B Chain B, Putative Enoyl Reductase Domain Of Polyketide Synthase
Length = 198
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 243 RLKAPKHRVMMSGNKERYSFGSFSMPKEGVATEVPNELVDDDHPLVYRPFKFSEFMAYFV 302
++ AP R + G K+ Y+ S + +A +VD D L +P ++ + + + +
Sbjct: 125 QILAPGGRFIELGKKDVYADASLGLAA--LAKSASFSVVDLDLNLKLQPARYRQLLQHIL 182
Query: 303 NNISDDALEI 312
+++D LE+
Sbjct: 183 QHVADGKLEV 192
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 171 LFRLMKYKVPPNNESA----VGLIPHTDKNVLSIL----CENNVQGLEILNKDGVYVPVG 222
L R + P + SA + + PH D ++++++ C N L+ G + +
Sbjct: 158 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQA-EVGGAFTDLP 216
Query: 223 VPDNASVVIVGDTLKAWSNGRLKAPKHRV 251
+A +V G + G++KAP+H V
Sbjct: 217 YRPDAVLVFCGAIATLVTGGQVKAPRHHV 245
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 171 LFRLMKYKVPPNNESA----VGLIPHTDKNVLSIL----CENNVQGLEILNKDGVYVPVG 222
L R + P + SA + + PH D ++++++ C N L+ G + +
Sbjct: 158 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQA-EVGGAFTDLP 216
Query: 223 VPDNASVVIVGDTLKAWSNGRLKAPKHRV 251
+A +V G + G++KAP+H V
Sbjct: 217 YRPDAVLVFCGAIATLVTGGQVKAPRHHV 245
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 171 LFRLMKYKVPPNNESA----VGLIPHTDKNVLSIL----CENNVQGLEILNKDGVYVPVG 222
L R + P + SA + + PH D ++++++ C N L+ G + +
Sbjct: 158 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQA-EVGGAFTDLP 216
Query: 223 VPDNASVVIVGDTLKAWSNGRLKAPKHRV 251
+A +V G + G++KAP+H V
Sbjct: 217 YRPDAVLVFCGAIATLVTGGQVKAPRHHV 245
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 171 LFRLMKYKVPPNNESA----VGLIPHTDKNVLSIL----CENNVQGLEILNKDGVYVPVG 222
L R + P + SA + + PH D ++++++ C N L+ G + +
Sbjct: 158 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQA-EVGGAFTDLP 216
Query: 223 VPDNASVVIVGDTLKAWSNGRLKAPKHRV 251
+A +V G + G++KAP+H V
Sbjct: 217 YRPDAVLVFCGAIATLVTGGQVKAPRHHV 245
>pdb|3E9Y|A Chain A, Arabidopsis Thaliana Acetohydroxyacid Synthase In Complex
With Monosulfuron
pdb|3EA4|A Chain A, Arabidopsis Thaliana Acetohydroxyacid Synthase In Complex
With Monosulfuron-Ester
Length = 584
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 3 TDEVQDEIPFLDFSGEVLDDF--TDERWREMCGQVRDALETHGFFVMYHDKIPKSLREDM 60
D + D +P + +G+V TD +V ++ H + VM + IP+ + E
Sbjct: 94 ADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRIIEEAF 153
Query: 61 FKAMNA-----LFDLPEETKSKYA 79
F A + L D+P++ + + A
Sbjct: 154 FLATSGRPGPVLVDVPKDIQQQLA 177
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 171 LFRLMKYKVPPNNESA----VGLIPHTDKNVLSIL----CENNVQGLEILNKDGVYVPVG 222
L R + P + SA + + PH D ++++++ C N L+ G + +
Sbjct: 178 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQA-EVGGAFTDLP 236
Query: 223 VPDNASVVIVGDTLKAWSNGRLKAPKHRV 251
+A +V G + G++KAP+H V
Sbjct: 237 YRPDAVLVFCGAIATLVTGGQVKAPRHHV 265
>pdb|1YBH|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide
Chlorimuron Ethyl
pdb|1YHY|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Metsulfuron Methyl
pdb|1YHZ|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Chlorsulfuron
pdb|1YI0|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Sulfometuron Methyl
pdb|1YI1|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With A Sulfonylurea Herbicide,
Tribenuron Methyl
pdb|1Z8N|A Chain A, Crystal Structure Of Arabidopsis Thaliana Acetohydroxyacid
Synthase In Complex With An Imidazolinone Herbicide,
Imazaquin
Length = 590
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 3 TDEVQDEIPFLDFSGEVLDDF--TDERWREMCGQVRDALETHGFFVMYHDKIPKSLREDM 60
D + D +P + +G+V TD +V ++ H + VM + IP+ + E
Sbjct: 95 ADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRIIEEAF 154
Query: 61 FKAMNA-----LFDLPEETKSKYA 79
F A + L D+P++ + + A
Sbjct: 155 FLATSGRPGPVLVDVPKDIQQQLA 178
>pdb|4B7J|A Chain A, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
pdb|4B7M|A Chain A, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
pdb|4B7M|B Chain B, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
pdb|4B7N|A Chain A, H1n1 2009 Pandemic Influenza Virus: Resistance Of The
I223r Neuraminidase Mutant Explained By Kinetic And
Structural Analysis
Length = 469
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 9/41 (21%)
Query: 215 DGV-YVPVGV--PDNASVV------IVGDTLKAWSNGRLKA 246
DG+ ++ +G+ PDN +V I+ DT+K+W N RL+
Sbjct: 186 DGINWLTIGISGPDNGAVAVLKYNGIITDTIKSWRNNRLRT 226
>pdb|2PTT|A Chain A, Structure Of Nk Cell Receptor 2b4 (Cd244) Bound To Its
Ligand Cd48
pdb|2PTV|A Chain A, Structure Of Nk Cell Receptor Ligand Cd48
Length = 110
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 133 LKSVTSKMLELNYTILKMVFESFGTGKLYVPHIQGSITLFRLMK 176
L + K+LE NY K +FES G++Y+ G++ + + K
Sbjct: 39 LHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALHISNVRK 82
>pdb|3THT|A Chain A, Crystal Structure And Rna Binding Properties Of The
RrmALKB DOMAINS In Human Abh8, An Enzyme Catalyzing Trna
Hypermodification, Northeast Structural Genomics
Consortium Target Hr5601b
pdb|3THT|B Chain B, Crystal Structure And Rna Binding Properties Of The
RrmALKB DOMAINS In Human Abh8, An Enzyme Catalyzing Trna
Hypermodification, Northeast Structural Genomics
Consortium Target Hr5601b
pdb|3THT|C Chain C, Crystal Structure And Rna Binding Properties Of The
RrmALKB DOMAINS In Human Abh8, An Enzyme Catalyzing Trna
Hypermodification, Northeast Structural Genomics
Consortium Target Hr5601b
pdb|3THT|D Chain D, Crystal Structure And Rna Binding Properties Of The
RrmALKB DOMAINS In Human Abh8, An Enzyme Catalyzing Trna
Hypermodification, Northeast Structural Genomics
Consortium Target Hr5601b
Length = 345
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 215 DGVYVPVGVPDNASVVIVGDTLKAWSNG 242
DG+ VPV +P + +V+ G++ W++G
Sbjct: 242 DGIAVPVMLPRRSLLVMTGESRYLWTHG 269
>pdb|2QZG|A Chain A, Crystal Structure Of Unknown Function Protein Mmp1188
pdb|2QZG|B Chain B, Crystal Structure Of Unknown Function Protein Mmp1188
pdb|2QZG|C Chain C, Crystal Structure Of Unknown Function Protein Mmp1188
pdb|2QZG|D Chain D, Crystal Structure Of Unknown Function Protein Mmp1188
Length = 94
Score = 28.5 bits (62), Expect = 4.9, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 52 IPKSLREDMFKAMNALFDLPEETKSKYASSKPYRSYMGESPAVPLH---QSFGIDNE 105
+P+++R A NAL + +E + A++ Y + E P P+H Q +GI +E
Sbjct: 32 VPRNIRAAADNAKNALHNEEQELIVRSATAIQYLDDISEDPNXPIHTRTQIWGIVSE 88
>pdb|3V0A|B Chain B, 2.7 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
NTNHA
pdb|3V0B|B Chain B, 3.9 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
NTNHA
Length = 1196
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 183 NESAVGLIPHTDKNVLSILCENN---VQGLEILNK 214
NES ++ N++S+L ENN ++GL ILNK
Sbjct: 990 NESIKEILNIYSSNIISLLSENNPSYIEGLTILNK 1024
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,147,852
Number of Sequences: 62578
Number of extensions: 445387
Number of successful extensions: 1027
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1012
Number of HSP's gapped (non-prelim): 24
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)