BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040086
         (146 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2A73|B Chain B, Human Complement Component C3
          Length = 991

 Score = 27.3 bits (59), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 9/18 (50%), Positives = 15/18 (83%)

Query: 116 KEVQRCCHVGMRDNNLQF 133
           KE+++CC  GMR+N ++F
Sbjct: 16  KELRKCCEDGMRENPMRF 33


>pdb|2B39|A Chain A, Structure Of Mammalian C3 With An Intact Thioester At 3a
           Resolution
 pdb|2B39|B Chain B, Structure Of Mammalian C3 With An Intact Thioester At 3a
           Resolution
          Length = 1661

 Score = 26.9 bits (58), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 8/17 (47%), Positives = 14/17 (82%)

Query: 117 EVQRCCHVGMRDNNLQF 133
           ++++CC  GMRDN ++F
Sbjct: 687 DLRKCCEDGMRDNPMKF 703


>pdb|4HW5|A Chain A, Crystal Structure Of The Human C3a Anaphylatoxin
 pdb|4HW5|B Chain B, Crystal Structure Of The Human C3a Anaphylatoxin
          Length = 83

 Score = 26.9 bits (58), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 17/23 (73%)

Query: 116 KEVQRCCHVGMRDNNLQFLNESR 138
           KE+++CC  GMR+N ++F  + R
Sbjct: 23  KELRKCCEDGMRENPMRFSCQRR 45


>pdb|4HWJ|A Chain A, Crystal Structure Of The Human C3a Desarg Anaphylatoxin
          Length = 82

 Score = 26.9 bits (58), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 17/23 (73%)

Query: 116 KEVQRCCHVGMRDNNLQFLNESR 138
           KE+++CC  GMR+N ++F  + R
Sbjct: 23  KELRKCCEDGMRENPMRFSCQRR 45


>pdb|4I6O|A Chain A, Crystal Structure Of Chemically Synthesized Human
           Anaphylatoxin C3a
          Length = 77

 Score = 26.6 bits (57), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 17/23 (73%)

Query: 116 KEVQRCCHVGMRDNNLQFLNESR 138
           KE+++CC  GMR+N ++F  + R
Sbjct: 17  KELRKCCEDGMRENPMRFSCQRR 39


>pdb|3PCO|B Chain B, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
           Complexed With Phenylalanine And Amp
 pdb|3PCO|D Chain D, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
           Complexed With Phenylalanine And Amp
          Length = 795

 Score = 26.2 bits (56), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 84  PLTIPCDESTFEEILRVVSRPETGTPDPLWSVKEVQRC 121
           P+T+   E+    + RVV       P PLW  ++++RC
Sbjct: 204 PITVEAPEACPRYLGRVVKGINVKAPTPLWMKEKLRRC 241


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,914,600
Number of Sequences: 62578
Number of extensions: 140414
Number of successful extensions: 266
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 260
Number of HSP's gapped (non-prelim): 7
length of query: 146
length of database: 14,973,337
effective HSP length: 90
effective length of query: 56
effective length of database: 9,341,317
effective search space: 523113752
effective search space used: 523113752
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)