Query 040086
Match_columns 146
No_of_seqs 107 out of 699
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 07:28:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040086.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040086hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vkp_A BTB/POZ domain-containi 52.6 20 0.00067 23.5 4.2 59 43-105 11-74 (109)
2 1und_A Advillin, P92; actin bi 45.3 5.1 0.00017 23.8 0.2 19 59-77 1-19 (37)
3 1vd2_A Protein kinase C, IOTA 41.3 33 0.0011 23.7 4.0 36 48-87 14-49 (89)
4 2vpk_A Myoneurin; transcriptio 40.8 31 0.001 23.0 3.8 55 42-105 24-83 (116)
5 3drz_A BTB/POZ domain-containi 38.7 41 0.0014 23.0 4.2 63 40-105 5-72 (107)
6 2xko_C PIPX, global nitrogen r 36.5 4.3 0.00015 28.7 -1.2 11 58-68 4-14 (89)
7 3ga1_A Nucleus accumbens-assoc 35.4 54 0.0019 22.3 4.4 54 43-105 36-93 (129)
8 2al3_A TUG long isoform; TUG U 34.0 44 0.0015 23.3 3.7 40 40-81 8-47 (90)
9 1r29_A B-cell lymphoma 6 prote 29.8 36 0.0012 23.0 2.7 58 42-105 31-92 (127)
10 1pzq_A Erythronolide synthase; 28.5 55 0.0019 20.9 3.1 17 11-27 35-51 (60)
11 1z3x_A Putative cytidyltransfe 27.9 5.7 0.0002 32.4 -2.0 30 36-67 208-237 (238)
12 1w8x_N Protein P31, protein C, 25.4 26 0.0009 25.6 1.3 28 39-67 86-123 (126)
13 3n5b_B ASR0485 protein; PII, P 25.2 8.9 0.00031 28.0 -1.2 26 36-69 13-38 (112)
14 2q81_A MIZ-1 protein; BTB/POZ 24.8 94 0.0032 20.8 4.1 55 42-106 29-86 (119)
15 1yu8_X Villin; alpha helix, 3- 24.2 19 0.00064 23.9 0.3 21 58-78 30-50 (67)
16 1y6i_A Mg-chelatase cofactor G 24.0 10 0.00035 30.7 -1.2 30 36-67 200-229 (233)
17 2if5_A Zinc finger and BTB dom 22.9 1.1E+02 0.0036 20.3 4.1 59 42-105 27-88 (120)
18 1ujs_A Actin-binding LIM prote 22.4 22 0.00075 24.8 0.4 21 58-78 45-65 (88)
19 1zav_U 50S ribosomal protein L 21.6 57 0.0019 18.2 2.0 13 66-78 18-30 (30)
20 1qzp_A Dematin; villin headpie 21.2 16 0.00056 24.1 -0.5 20 58-77 31-50 (68)
21 3eh7_A 4-hydroxybutyrate COA-t 21.0 50 0.0017 28.4 2.5 42 36-78 382-434 (434)
No 1
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=52.61 E-value=20 Score=23.54 Aligned_cols=59 Identities=20% Similarity=0.332 Sum_probs=42.3
Q ss_pred EEEEecC--CceeeeeecccC--CcHHHHHHHHHHHHhcCCCCCCCeeec-CChHHHHHHHHHhcCCC
Q 040086 43 VAVCVGS--SSRRFIVRATYL--NHPMFKKLLVQAEEEYGFSHVGPLTIP-CDESTFEEILRVVSRPE 105 (146)
Q Consensus 43 ~aVyVG~--e~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~G~L~IP-C~~~~Fe~vl~~i~~~~ 105 (146)
+.+.||. +.++|-++-..| ..|.|+.++...-.|- . ..+.|| .+...|+.++..+-.+.
T Consensus 11 v~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~---~-~~i~l~~~~~~~f~~~l~~iYt~~ 74 (109)
T 2vkp_A 11 VHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV---K-SEIHIPDVEPAAFLILLKYMYSDE 74 (109)
T ss_dssp EEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC---------C-CEEEETTSCHHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccC---C-CeEEeCCCCHHHHHHHHHHHcCCC
Confidence 5566754 247888888887 6899999997544332 2 678887 69999999999998765
No 2
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=45.34 E-value=5.1 Score=23.79 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=17.0
Q ss_pred ccCCcHHHHHHHHHHHHhc
Q 040086 59 TYLNHPMFKKLLVQAEEEY 77 (146)
Q Consensus 59 ~~L~hP~F~~LL~~aeEEf 77 (146)
.||+.-.|++++.++.+||
T Consensus 1 ~yLsd~dF~~vFgmsr~eF 19 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQF 19 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCcCHHHH
Confidence 4899999999999999997
No 3
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=41.31 E-value=33 Score=23.65 Aligned_cols=36 Identities=11% Similarity=0.066 Sum_probs=28.1
Q ss_pred cCCceeeeeecccCCcHHHHHHHHHHHHhcCCCCCCCeee
Q 040086 48 GSSSRRFIVRATYLNHPMFKKLLVQAEEEYGFSHVGPLTI 87 (146)
Q Consensus 48 G~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~G~L~I 87 (146)
..+-.|+.||. ...|.+|.++-.+-|++..+.++++
T Consensus 14 ~gdi~~~~v~~----~i~~~~L~~kv~~~~~~~~~~~f~l 49 (89)
T 1vd2_A 14 RGDIMITHFEP----SISFEGLCNEVRDMCSFDNEQLFTM 49 (89)
T ss_dssp SSCEEEEEECT----TCCHHHHHHHHHHHTTCCSSCCEEE
T ss_pred CCeEEEEECCC----CCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 44667888886 5689999999999999876555554
No 4
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=40.83 E-value=31 Score=23.03 Aligned_cols=55 Identities=11% Similarity=0.240 Sum_probs=42.4
Q ss_pred cEEEEecCCceeeeeecccC--CcHHHHHHHHHHHHhcCCCCCCCeeec---CChHHHHHHHHHhcCCC
Q 040086 42 HVAVCVGSSSRRFIVRATYL--NHPMFKKLLVQAEEEYGFSHVGPLTIP---CDESTFEEILRVVSRPE 105 (146)
Q Consensus 42 ~~aVyVG~e~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~G~L~IP---C~~~~Fe~vl~~i~~~~ 105 (146)
-+.+.|| .++|-++-..| ..|.|+.++... .+..+.|+ .+...|+.++..+-.+.
T Consensus 24 Dv~l~v~--~~~~~aHk~vLaa~S~yF~~~f~~~-------~~~~i~l~~~~~~~~~f~~ll~~~Yt~~ 83 (116)
T 2vpk_A 24 DCTIVIG--EFQFKAHRNVLASFSEYFGAIYRST-------SENNVFLDQSQVKADGFQKLLEFIYTGT 83 (116)
T ss_dssp CEEEEET--TEEEEECHHHHHHHCHHHHHHHTTC-------CCSCEECCTTTCCHHHHHHHHHHHHHSC
T ss_pred cEEEEEC--CEEEeccHHHHhhcCHHHHHHHcCC-------CCCeEEeecCCCCHHHHHHHHHHHcCCC
Confidence 3566675 36788887777 679999988654 34678887 79999999999998765
No 5
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=38.66 E-value=41 Score=23.02 Aligned_cols=63 Identities=19% Similarity=0.301 Sum_probs=44.8
Q ss_pred CCcEEEEecCCceeeeeecccCC-cH--HHHHHHHHHHHhcC--CCCCCCeeecCChHHHHHHHHHhcCCC
Q 040086 40 AGHVAVCVGSSSRRFIVRATYLN-HP--MFKKLLVQAEEEYG--FSHVGPLTIPCDESTFEEILRVVSRPE 105 (146)
Q Consensus 40 kG~~aVyVG~e~~RfvVp~~~L~-hP--~F~~LL~~aeEEfG--~~~~G~L~IPC~~~~Fe~vl~~i~~~~ 105 (146)
...+.+-|| ..+|.+..+-|. +| .|..+.... .++. ...+|.+-|-.|...|++||..+..+.
T Consensus 5 ~~~v~LNVG--G~~f~t~~~TL~~~p~s~L~~~~~~~-~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g~ 72 (107)
T 3drz_A 5 SKWVRLNVG--GTYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGK 72 (107)
T ss_dssp CCEEEEEET--TEEEEEEHHHHTSSTTSHHHHHHTTC-GGGGGGBCTTSCEEECSCHHHHHHHHHHHHHSC
T ss_pred CCEEEEEEC--CEEEEECHHHHhcCCCcchhHHHhcC-CCCCcCCCCCceEEecCChHHHHHHHHHhCCCe
Confidence 356778897 589999886664 44 555554321 1232 335689999999999999999998765
No 6
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=36.49 E-value=4.3 Score=28.67 Aligned_cols=11 Identities=55% Similarity=0.996 Sum_probs=8.2
Q ss_pred cccCCcHHHHH
Q 040086 58 ATYLNHPMFKK 68 (146)
Q Consensus 58 ~~~L~hP~F~~ 68 (146)
..|||||.|--
T Consensus 4 E~YLNHPtFGl 14 (89)
T 2xko_C 4 ENYLNHPTFGL 14 (89)
T ss_dssp CCEEEETTTEE
T ss_pred cccccCCccch
Confidence 35999998843
No 7
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=35.42 E-value=54 Score=22.29 Aligned_cols=54 Identities=20% Similarity=0.384 Sum_probs=41.8
Q ss_pred EEEEecCCceeeeeecccCC--cHHHHHHHHHHHHhcCCCCCCCeeec--CChHHHHHHHHHhcCCC
Q 040086 43 VAVCVGSSSRRFIVRATYLN--HPMFKKLLVQAEEEYGFSHVGPLTIP--CDESTFEEILRVVSRPE 105 (146)
Q Consensus 43 ~aVyVG~e~~RfvVp~~~L~--hP~F~~LL~~aeEEfG~~~~G~L~IP--C~~~~Fe~vl~~i~~~~ 105 (146)
+.+.|| .++|-++-..|. .|.|+.++... ....+.|| .+...|+.++..+-.+.
T Consensus 36 v~l~v~--~~~~~~Hk~vLaa~S~~F~~~f~~~-------~~~~i~l~~~~~~~~f~~ll~~iYtg~ 93 (129)
T 3ga1_A 36 VSVVVK--GHAFKAHRAVLAASSSYFRDLFNNS-------RSAVVELPAAVQPQSFQQILSFCYTGR 93 (129)
T ss_dssp EEEEET--TEEEEECHHHHHHHBHHHHHHHHHC-------CCSEEECCTTCCHHHHHHHHHHHHHSE
T ss_pred eEEEEC--CEEEEehHHHHHHcCHHHHHHHcCC-------CCCEEEECCCCCHHHHHHHHHHHhCCc
Confidence 566675 467777766664 79999998775 45688996 89999999999987654
No 8
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=34.00 E-value=44 Score=23.27 Aligned_cols=40 Identities=18% Similarity=0.317 Sum_probs=29.1
Q ss_pred CCcEEEEecCCceeeeeecccCCcHHHHHHHHHHHHhcCCCC
Q 040086 40 AGHVAVCVGSSSRRFIVRATYLNHPMFKKLLVQAEEEYGFSH 81 (146)
Q Consensus 40 kG~~aVyVG~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~ 81 (146)
.|-..+++....+|+.|.+. -.-.+.++|++|=+.|||+.
T Consensus 8 ~~m~v~Vl~~n~rr~~VKvt--p~t~L~~VL~eaC~K~gl~~ 47 (90)
T 2al3_A 8 GGSAVSVLAPNGRRHTVKVT--PSTVLLQVLEDTCRRQDFNP 47 (90)
T ss_dssp --CCEEEECTTSCEEEECCC--TTSBHHHHHHHHHHHTTCCG
T ss_pred CccEEEEEcCCCcEEEEEEC--CCCCHHHHHHHHHHHhCCCh
Confidence 34445555567899999984 34478899999999999964
No 9
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=29.79 E-value=36 Score=23.02 Aligned_cols=58 Identities=16% Similarity=0.337 Sum_probs=43.8
Q ss_pred cEEEEecCCceeeeeecccC--CcHHHHHHHHHHHHhcCCCCCCCeee-c-CChHHHHHHHHHhcCCC
Q 040086 42 HVAVCVGSSSRRFIVRATYL--NHPMFKKLLVQAEEEYGFSHVGPLTI-P-CDESTFEEILRVVSRPE 105 (146)
Q Consensus 42 ~~aVyVG~e~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~G~L~I-P-C~~~~Fe~vl~~i~~~~ 105 (146)
-+.+.|| .++|-+.-..| ..|.|+.++...-.| ....+.| + .+...|+.++..+-.+.
T Consensus 31 Dv~l~v~--~~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~~~i~l~~~~~~~~f~~ll~~~Ytg~ 92 (127)
T 1r29_A 31 DVVIVVS--REQFRAHKTVLMACSGLFYSIFTDQLKR----NLSVINLDPEINPEGFNILLDFMYTSR 92 (127)
T ss_dssp CEEEEET--TEEEEECHHHHHHHCHHHHHHHTSTTTT----TCSEEECCTTSCHHHHHHHHHHHHHSC
T ss_pred CEEEEEC--CEEEehHHHHHHHhCHHHHHHhcCCccC----CCCEEEeCCCCCHHHHHHHHHHHcCCC
Confidence 3556675 36788887777 689999999754433 3568899 4 68999999999998665
No 10
>1pzq_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.34.3.1
Probab=28.49 E-value=55 Score=20.88 Aligned_cols=17 Identities=29% Similarity=0.667 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhh
Q 040086 11 VRIRQMLRQWRRKARIA 27 (146)
Q Consensus 11 ~kL~~~~rkW~~~a~~~ 27 (146)
.+|..++|||.+..+-+
T Consensus 35 qrlesllrrwnsrrada 51 (60)
T 1pzq_A 35 QRLESLLRRWNSRRADA 51 (60)
T ss_dssp HHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhhcccCC
Confidence 37889999999876543
No 11
>1z3x_A Putative cytidyltransferase; transferase activator; 1.50A {Thermosynechococcus elongatus} SCOP: a.118.1.22 a.261.1.1 PDB: 1z3y_A
Probab=27.87 E-value=5.7 Score=32.38 Aligned_cols=30 Identities=30% Similarity=0.503 Sum_probs=20.2
Q ss_pred CCCCCCcEEEEecCCceeeeeecccCCcHHHH
Q 040086 36 SDVPAGHVAVCVGSSSRRFIVRATYLNHPMFK 67 (146)
Q Consensus 36 ~~vpkG~~aVyVG~e~~RfvVp~~~L~hP~F~ 67 (146)
...|+||+|+.- .-+=.-+=.++|+||.|.
T Consensus 208 l~AP~GHLP~~~--~lrGv~l~~~ll~hpa~~ 237 (238)
T 1z3x_A 208 LSAPRGHLPLTN--QLRGVQVLNALLNHPAWT 237 (238)
T ss_dssp TTSCTTCCSCCC--CTTCSHHHHHHHTCGGGG
T ss_pred CCCCCCCCCcCc--ccccHHHHHHHHcCcccc
Confidence 358999999864 122222556889999873
No 12
>1w8x_N Protein P31, protein C, GPC; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=25.43 E-value=26 Score=25.63 Aligned_cols=28 Identities=21% Similarity=0.408 Sum_probs=17.4
Q ss_pred CCCcEEEEecCCceeee----------eecccCCcHHHH
Q 040086 39 PAGHVAVCVGSSSRRFI----------VRATYLNHPMFK 67 (146)
Q Consensus 39 pkG~~aVyVG~e~~Rfv----------Vp~~~L~hP~F~ 67 (146)
..|++|+.| ..+-+|+ +|+-|||.|+-+
T Consensus 86 ~QGYfPlL~-~~~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T 1w8x_N 86 KQGYFPLLV-PGRAKFVARHLGSGKKSVPLFFLNFTIAQ 123 (126)
T ss_dssp CCSSCCEEE-CCSSSSEEEEEEEESSCCCCSCCC-----
T ss_pred Ccccceeec-cchhhhhhhhhcCCCcceeeEEEeceeee
Confidence 479999999 4455555 688899988644
No 13
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=25.15 E-value=8.9 Score=28.03 Aligned_cols=26 Identities=38% Similarity=0.516 Sum_probs=9.0
Q ss_pred CCCCCCcEEEEecCCceeeeeecccCCcHHHHHH
Q 040086 36 SDVPAGHVAVCVGSSSRRFIVRATYLNHPMFKKL 69 (146)
Q Consensus 36 ~~vpkG~~aVyVG~e~~RfvVp~~~L~hP~F~~L 69 (146)
.-||+|-.--=+.. ..|||||.|--|
T Consensus 13 ~~~~~~~~~~~ms~--------E~YLNHPTFGLL 38 (112)
T 3n5b_B 13 GLVPRGSHMNPENS--------ETYINHPTWGLL 38 (112)
T ss_dssp -------------C--------CCEEEETTTEEE
T ss_pred CcccCCccCCCcch--------hhhccCCccchh
Confidence 45777754332222 249999998543
No 14
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=24.75 E-value=94 Score=20.77 Aligned_cols=55 Identities=15% Similarity=0.253 Sum_probs=41.6
Q ss_pred cEEEEecCCceeeeeecccC--CcHHHHHHHHHHHHhcCCCCCCCeeecC-ChHHHHHHHHHhcCCCC
Q 040086 42 HVAVCVGSSSRRFIVRATYL--NHPMFKKLLVQAEEEYGFSHVGPLTIPC-DESTFEEILRVVSRPET 106 (146)
Q Consensus 42 ~~aVyVG~e~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~G~L~IPC-~~~~Fe~vl~~i~~~~~ 106 (146)
-+.+.|| .++|-++-..| ..|.|+.++.. +...+.++- +...|+.++..+-.+.-
T Consensus 29 Dv~l~v~--~~~~~aHk~vLaa~S~yF~~~f~~--------~~~~i~l~~~~~~~f~~ll~~~Ytg~~ 86 (119)
T 2q81_A 29 DCTFVVD--GVHFKAHKAVLAACSEYFKMLFVD--------QKDVVHLDISNAAGLGQVLEFMYTAKL 86 (119)
T ss_dssp CEEEEET--TEEEEECHHHHHHHCHHHHHHHHH--------CCSGGGGGGCCHHHHHHHHHHHHHSCC
T ss_pred ceEEEEC--CEEEehhHHHHHHcCHHHHHHHcC--------CCCEEEeCCCCHHHHHHHHHHHcCCCC
Confidence 3556675 37788888777 48999999975 245777875 78999999999987653
No 15
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=24.22 E-value=19 Score=23.90 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=18.9
Q ss_pred cccCCcHHHHHHHHHHHHhcC
Q 040086 58 ATYLNHPMFKKLLVQAEEEYG 78 (146)
Q Consensus 58 ~~~L~hP~F~~LL~~aeEEfG 78 (146)
..||+.-.|++++.++.+||-
T Consensus 30 E~yLsdedF~~vFgms~~eF~ 50 (67)
T 1yu8_X 30 ENHLSDEDFKAVFGMTRSAFA 50 (67)
T ss_dssp GGGSCHHHHHHHHSSCHHHHH
T ss_pred HhcCCHHHHHHHHCcCHHHHH
Confidence 379999999999999999973
No 16
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1
Probab=24.03 E-value=10 Score=30.74 Aligned_cols=30 Identities=23% Similarity=0.451 Sum_probs=20.4
Q ss_pred CCCCCCcEEEEecCCceeeeeecccCCcHHHH
Q 040086 36 SDVPAGHVAVCVGSSSRRFIVRATYLNHPMFK 67 (146)
Q Consensus 36 ~~vpkG~~aVyVG~e~~RfvVp~~~L~hP~F~ 67 (146)
...|+||+|+.-. -+=.-+=..+|+||.|.
T Consensus 200 l~AP~GHLP~~~~--lrG~~l~~~ll~hpa~~ 229 (233)
T 1y6i_A 200 LSAPQGHLPLLNQ--LRGVRVAESLYRHPVWS 229 (233)
T ss_dssp TTSCTTCCSCCCC--TTCTHHHHHHHTSTHHH
T ss_pred CCCCCCCCCCccc--cchHHHHHHHHCCcccc
Confidence 3589999998642 11112556889999984
No 17
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=22.93 E-value=1.1e+02 Score=20.29 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=41.7
Q ss_pred cEEEEecCCceeeeeecccC--CcHHHHHHHHHHHHhcCCCCCCCeeec-CChHHHHHHHHHhcCCC
Q 040086 42 HVAVCVGSSSRRFIVRATYL--NHPMFKKLLVQAEEEYGFSHVGPLTIP-CDESTFEEILRVVSRPE 105 (146)
Q Consensus 42 ~~aVyVG~e~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~G~L~IP-C~~~~Fe~vl~~i~~~~ 105 (146)
-+.+.|| .++|-++-..| ..|.|+.++...-.| .....+.|+ .+...|+.++..+-.+.
T Consensus 27 Dv~l~v~--~~~~~aHk~vLaa~S~~F~~~f~~~~~e---~~~~~i~l~~~~~~~f~~ll~~~Yt~~ 88 (120)
T 2if5_A 27 DVVILVE--GREFPTHRSVLAACSQYFKKLFTSGAVV---DQQNVYEIDFVSAEALTALMDFAYTAT 88 (120)
T ss_dssp CEEEEET--TEEEEECHHHHHHHCHHHHHHHHC--------CCSEEECCSSCHHHHHHHHHHHHHSC
T ss_pred CeEEEEC--CEEEeHHHHHHHHhCHHHHHHhcCCccc---cCCceEEeCCCCHHHHHHHHHHHcCCC
Confidence 3556675 47788877777 489999998743322 234578888 58999999999998765
No 18
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=22.43 E-value=22 Score=24.79 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=19.0
Q ss_pred cccCCcHHHHHHHHHHHHhcC
Q 040086 58 ATYLNHPMFKKLLVQAEEEYG 78 (146)
Q Consensus 58 ~~~L~hP~F~~LL~~aeEEfG 78 (146)
..||++-.|++++.|+.+||-
T Consensus 45 E~YLSdedF~~vFgMsr~eF~ 65 (88)
T 1ujs_A 45 ERHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGGSCTTHHHHHHSSCHHHHT
T ss_pred HhcCCHHHHHHHHCcCHHHHH
Confidence 379999999999999999974
No 19
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=21.62 E-value=57 Score=18.24 Aligned_cols=13 Identities=23% Similarity=0.677 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhcC
Q 040086 66 FKKLLVQAEEEYG 78 (146)
Q Consensus 66 F~~LL~~aeEEfG 78 (146)
..+|.+..||+||
T Consensus 18 l~eLvk~lEe~fG 30 (30)
T 1zav_U 18 LAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 4678888999987
No 20
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=21.22 E-value=16 Score=24.14 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=18.5
Q ss_pred cccCCcHHHHHHHHHHHHhc
Q 040086 58 ATYLNHPMFKKLLVQAEEEY 77 (146)
Q Consensus 58 ~~~L~hP~F~~LL~~aeEEf 77 (146)
..||++-.|++++.++.+||
T Consensus 31 E~yLsdedF~~vFgmsr~eF 50 (68)
T 1qzp_A 31 ERHLSAEDFSRVFAMSPEEF 50 (68)
T ss_dssp GGGBCHHHHHHHSSSCHHHH
T ss_pred HhhCCHHHHHHHHCcCHHHH
Confidence 47999999999999999997
No 21
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=20.98 E-value=50 Score=28.43 Aligned_cols=42 Identities=21% Similarity=0.331 Sum_probs=25.9
Q ss_pred CCCCCCcEEEEecC---------C-ceeeeeecccCCcHHHHHHHHH-HHHhcC
Q 040086 36 SDVPAGHVAVCVGS---------S-SRRFIVRATYLNHPMFKKLLVQ-AEEEYG 78 (146)
Q Consensus 36 ~~vpkG~~aVyVG~---------e-~~RfvVp~~~L~hP~F~~LL~~-aeEEfG 78 (146)
.+.|+.++-++|.+ + ++|..-=++ +.||.|++.|.+ |++.||
T Consensus 382 v~~~~~~v~~vVTE~Gva~L~G~~~~Era~~li~-iAhpdfr~~L~~~a~~~~~ 434 (434)
T 3eh7_A 382 VTTLRNEVDYVVTEYGIAQLKGKSLRQRAEALIA-IAHPDFREELTKHLRKRFG 434 (434)
T ss_dssp EEECTTTCCEEEETTEEEECTTCCHHHHHHHHHT-TSCHHHHHHHHHHHHHHHC
T ss_pred ceeCccceeEEEcccEEEECCCCCHHHHHHHHhc-CCCCCcHHHHHHHHHHhhC
Confidence 45677777777743 1 233332235 999999997754 555565
Done!