Query 040086
Match_columns 146
No_of_seqs 107 out of 699
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 07:29:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040086.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040086hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1z3xa2 a.261.1.1 (A:88-235) G 54.8 0.52 3.8E-05 34.1 -2.0 28 37-66 119-146 (148)
2 d1y6ia2 a.261.1.1 (A:83-233) M 50.1 0.98 7.2E-05 32.7 -1.2 31 36-68 118-148 (151)
3 d1unda_ a.14.1.1 (A:) Advillin 44.8 2.5 0.00018 23.7 0.2 18 60-77 1-18 (36)
4 d1pzqa_ a.34.3.1 (A:) Erythron 37.1 10 0.00073 23.1 2.3 16 11-26 35-50 (60)
5 d2bkfa1 d.15.2.2 (A:1-85) Next 36.1 31 0.0023 22.1 4.9 52 43-96 7-67 (85)
6 d1wjta_ a.48.3.1 (A:) Transcri 33.8 18 0.0013 23.7 3.4 17 10-26 71-88 (103)
7 d1nn7a_ d.42.1.2 (A:) Potassiu 28.8 2.8 0.00021 27.6 -1.5 59 43-105 2-62 (105)
8 d3buxb3 d.93.1.1 (B:264-351) C 28.6 29 0.0021 22.5 3.6 43 39-83 36-79 (88)
9 d2r85a1 c.30.1.8 (A:1-99) 5-fo 25.6 1.3 9.3E-05 30.2 -3.9 22 37-58 66-88 (99)
10 d1ip9a_ d.15.2.2 (A:) Bud emer 24.7 71 0.0052 19.6 5.1 48 43-94 15-71 (85)
11 d1yu5x1 a.14.1.1 (X:10-76) Vil 24.7 8.5 0.00062 24.1 0.3 20 58-77 30-49 (67)
12 d1ujsa_ a.14.1.1 (A:) Actin-bi 20.4 12 0.00088 24.5 0.4 21 58-78 45-65 (88)
No 1
>d1z3xa2 a.261.1.1 (A:88-235) GUN4-like protein Ycf53 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=54.79 E-value=0.52 Score=34.07 Aligned_cols=28 Identities=32% Similarity=0.562 Sum_probs=20.1
Q ss_pred CCCCCcEEEEecCCceeeeeecccCCcHHH
Q 040086 37 DVPAGHVAVCVGSSSRRFIVRATYLNHPMF 66 (146)
Q Consensus 37 ~vpkG~~aVyVG~e~~RfvVp~~~L~hP~F 66 (146)
..|+||+|+.- ..+-..|=-..|+||.|
T Consensus 119 ~AP~GHLP~~~--~lrg~~~~~~~l~h~a~ 146 (148)
T d1z3xa2 119 SAPRGHLPLTN--QLRGVQVLNALLNHPAW 146 (148)
T ss_dssp TSCTTCCSCCC--CTTCSHHHHHHHTCGGG
T ss_pred CCCCCCCCcCC--ccchHHHHHHHhcCccc
Confidence 58999999864 33444455578899876
No 2
>d1y6ia2 a.261.1.1 (A:83-233) Mg-chelatase cofactor Gun4 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=50.05 E-value=0.98 Score=32.66 Aligned_cols=31 Identities=19% Similarity=0.413 Sum_probs=20.1
Q ss_pred CCCCCCcEEEEecCCceeeeeecccCCcHHHHH
Q 040086 36 SDVPAGHVAVCVGSSSRRFIVRATYLNHPMFKK 68 (146)
Q Consensus 36 ~~vpkG~~aVyVG~e~~RfvVp~~~L~hP~F~~ 68 (146)
...|+||+|+.- .-+- --+--..|+||.|.+
T Consensus 118 l~AP~GHLP~~~-~lrG-~~~~~~l~~h~~~~~ 148 (151)
T d1y6ia2 118 LSAPQGHLPLLN-QLRG-VRVAESLYRHPVWSQ 148 (151)
T ss_dssp TTSCTTCCSCCC-CTTC-THHHHHHHTSTHHHH
T ss_pred CCCCCCCCCccc-hhhh-HHHHHHHHcCcchhh
Confidence 358999999864 2111 113446899999864
No 3
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.78 E-value=2.5 Score=23.70 Aligned_cols=18 Identities=17% Similarity=0.388 Sum_probs=16.6
Q ss_pred cCCcHHHHHHHHHHHHhc
Q 040086 60 YLNHPMFKKLLVQAEEEY 77 (146)
Q Consensus 60 ~L~hP~F~~LL~~aeEEf 77 (146)
||+.-.|++++.++.+||
T Consensus 1 yLsd~dF~~vFgmsr~eF 18 (36)
T d1unda_ 1 YLSEQDFVSVFGITRGQF 18 (36)
T ss_dssp CCCHHHHHHHHSSCHHHH
T ss_pred CCCHHHHHHHHCcCHHHH
Confidence 789999999999999997
No 4
>d1pzqa_ a.34.3.1 (A:) Erythronolide synthase {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=37.14 E-value=10 Score=23.10 Aligned_cols=16 Identities=25% Similarity=0.659 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 040086 11 VRIRQMLRQWRRKARI 26 (146)
Q Consensus 11 ~kL~~~~rkW~~~a~~ 26 (146)
.+|..++|||+++-.-
T Consensus 35 ~rle~llrrw~srr~~ 50 (60)
T d1pzqa_ 35 QRLESLLRRWNSRRAD 50 (60)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccCCC
Confidence 3788999999987653
No 5
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.09 E-value=31 Score=22.11 Aligned_cols=52 Identities=10% Similarity=0.192 Sum_probs=36.5
Q ss_pred EEEEecCCceeeeeecccCCcHHHHHHHHHHHHhcCCCC---------CCCeeecCChHHHHH
Q 040086 43 VAVCVGSSSRRFIVRATYLNHPMFKKLLVQAEEEYGFSH---------VGPLTIPCDESTFEE 96 (146)
Q Consensus 43 ~aVyVG~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~---------~G~L~IPC~~~~Fe~ 96 (146)
+-|..|.+..||.++.. +++.|.+|..+-+.-|+... +--++|.|++++=|.
T Consensus 7 vKvtf~~dt~RF~ls~~--~~~~~~~L~~~i~~rf~l~~~~lkY~Ddd~e~v~l~~d~dl~E~ 67 (85)
T d2bkfa1 7 LNVTFKNEIQSFLVSDP--ENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEEA 67 (85)
T ss_dssp EEEEETTEEEEEEESCG--GGCCHHHHHHHHHHHHTCSSEEEEEECTTSCEEEECSHHHHHHH
T ss_pred EEEEECCceEEEEecCC--CCCcHHHHHHHHHHhcCcccceEEEEcCCCCEEEEecHHHHHHH
Confidence 33455788899988532 47889999999999988532 235677787765443
No 6
>d1wjta_ a.48.3.1 (A:) Transcription elongation factor S-II protein 3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.85 E-value=18 Score=23.67 Aligned_cols=17 Identities=18% Similarity=0.696 Sum_probs=12.9
Q ss_pred HHHH-HHHHHHHHHHHHh
Q 040086 10 IVRI-RQMLRQWRRKARI 26 (146)
Q Consensus 10 i~kL-~~~~rkW~~~a~~ 26 (146)
+..+ +.++++|+.+...
T Consensus 71 v~~lAk~Lv~~WK~~v~~ 88 (103)
T d1wjta_ 71 VVSLAKVLIKNWKRLLDS 88 (103)
T ss_dssp HHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 4444 8899999998754
No 7
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=28.75 E-value=2.8 Score=27.64 Aligned_cols=59 Identities=20% Similarity=0.281 Sum_probs=39.2
Q ss_pred EEEEecCCceeeeeecccC-CcHHHHHHHHHHHHhcCC-CCCCCeeecCChHHHHHHHHHhcCCC
Q 040086 43 VAVCVGSSSRRFIVRATYL-NHPMFKKLLVQAEEEYGF-SHVGPLTIPCDESTFEEILRVVSRPE 105 (146)
Q Consensus 43 ~aVyVG~e~~RfvVp~~~L-~hP~F~~LL~~aeEEfG~-~~~G~L~IPC~~~~Fe~vl~~i~~~~ 105 (146)
+.+-|| .++|.+..+-| ++|.. +|.......-+ ..+|.+-|--|...|++||..+..+.
T Consensus 2 I~LNVG--G~~f~t~~~TL~~~p~s--~l~~~~~~~~~~~~~~~~FiDRdp~~F~~IL~ylR~G~ 62 (105)
T d1nn7a_ 2 IVLNVS--GTRFQTWQDTLERYPDT--LLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRTGK 62 (105)
T ss_dssp EEEEET--TEEEEECHHHHHTSCSS--STTSGGGGGGEEGGGTEEEECSCTTTHHHHHHHHHHSC
T ss_pred EEEEEC--CEEEEEeHHHHhcCCCC--CccccccccCcCCCCCcEEEeCCHHHHHHHHHHHhcCc
Confidence 456676 47888887655 44431 11122222222 35789999999999999999999775
No 8
>d3buxb3 d.93.1.1 (B:264-351) Cbl {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.58 E-value=29 Score=22.50 Aligned_cols=43 Identities=23% Similarity=0.347 Sum_probs=29.7
Q ss_pred CCCcEEE-EecCCceeeeeecccCCcHHHHHHHHHHHHhcCCCCCC
Q 040086 39 PAGHVAV-CVGSSSRRFIVRATYLNHPMFKKLLVQAEEEYGFSHVG 83 (146)
Q Consensus 39 pkG~~aV-yVG~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~G 83 (146)
.=|.-|+ ||-.|.+ ++-+--.|.|++|.|++-.+|.|=.-.||
T Consensus 36 rlGQWAIGyvt~dg~--IlQTIp~nk~L~qaLidG~reGfylyPdG 79 (88)
T d3buxb3 36 RLGQWAIGYVTADGN--ILQTIPHNKPLFQALIDGFREGFYLFPDG 79 (88)
T ss_dssp STTSEEEEEECTTSC--EEEECCSSCCHHHHHHHHHHHTSSCEETT
T ss_pred cccceeeeeeccCCc--eeeeccCccHHHHHHHhcccceeEECCCC
Confidence 3355554 6755533 66677799999999999999987333333
No 9
>d2r85a1 c.30.1.8 (A:1-99) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]}
Probab=25.59 E-value=1.3 Score=30.17 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=16.6
Q ss_pred CCCCCcEEEEecCCc-eeeeeec
Q 040086 37 DVPAGHVAVCVGSSS-RRFIVRA 58 (146)
Q Consensus 37 ~vpkG~~aVyVG~e~-~RfvVp~ 58 (146)
-||.|.|++|+|-|+ +.|-||+
T Consensus 66 ~IPhgSfv~Y~G~d~ie~~~VP~ 88 (99)
T d2r85a1 66 VVPTGSFVAHLGIELVENMKVPY 88 (99)
T ss_dssp ECCCTTHHHHHCHHHHHTCCSCB
T ss_pred EecCCCEEEEEcHHHHhcCCCCc
Confidence 489999999999652 3476764
No 10
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.70 E-value=71 Score=19.58 Aligned_cols=48 Identities=8% Similarity=0.080 Sum_probs=33.9
Q ss_pred EEEEecCCceeeeeecccCCcHHHHHHHHHHHHhcCCC--------CC-CCeeecCChHHH
Q 040086 43 VAVCVGSSSRRFIVRATYLNHPMFKKLLVQAEEEYGFS--------HV-GPLTIPCDESTF 94 (146)
Q Consensus 43 ~aVyVG~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~--------~~-G~L~IPC~~~~F 94 (146)
+=|+.+++..||.||.+ ..|.+|.++-++-|+-. .+ ..++|-||.++=
T Consensus 15 VKv~~~~D~~~~~l~~~----it~~dL~~kI~~rf~~~~~~lkY~Dedgd~v~i~sD~Dl~ 71 (85)
T d1ip9a_ 15 IKFYYKDDIFALMLKGD----TTYKELRSKIAPRIDTDNFKLQTKLFDGSGEEIKTDSQVS 71 (85)
T ss_dssp EEECBTTCCEEEEECSC----CCHHHHHHHHHHHHTSSCEEEEECCSSSCCSCCCSHHHHH
T ss_pred EEEEECCcEEEEEeCCC----CCHHHHHHHHHHHhCCCceEEEEEcCCCCEEEEeCHHHHH
Confidence 33445788999999854 45999999999988622 12 356788887763
No 11
>d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=24.68 E-value=8.5 Score=24.05 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=18.5
Q ss_pred cccCCcHHHHHHHHHHHHhc
Q 040086 58 ATYLNHPMFKKLLVQAEEEY 77 (146)
Q Consensus 58 ~~~L~hP~F~~LL~~aeEEf 77 (146)
..||++-.|++++.++.+||
T Consensus 30 E~yLsd~dF~~vFgms~~eF 49 (67)
T d1yu5x1 30 ENHLSDEDFKAVFGMTRSAF 49 (67)
T ss_dssp GGGSCHHHHHHHHSSCHHHH
T ss_pred HhhCCHHHHHHHHCcCHHHH
Confidence 37999999999999999997
No 12
>d1ujsa_ a.14.1.1 (A:) Actin-binding LIM protein homologue KIAA0843 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.43 E-value=12 Score=24.54 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=19.0
Q ss_pred cccCCcHHHHHHHHHHHHhcC
Q 040086 58 ATYLNHPMFKKLLVQAEEEYG 78 (146)
Q Consensus 58 ~~~L~hP~F~~LL~~aeEEfG 78 (146)
..||++-.|++++.++.+||-
T Consensus 45 E~YLSdedF~~vFgMsr~eF~ 65 (88)
T d1ujsa_ 45 ERHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGGSCTTHHHHHHSSCHHHHT
T ss_pred HhcCCHHHHHHHHCcCHHHHH
Confidence 479999999999999999974
Done!