BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040088
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IZR|BB Chain b, Localization Of The Large Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 147
Score = 115 bits (289), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 66/134 (49%), Positives = 77/134 (57%), Gaps = 27/134 (20%)
Query: 1 MATVGGQLIWEIVKKNNCFLVKEFGRGSA------SAHAVITCSVYKFGGRKIECSTFVF 54
MATV LIWEIVKKNNCFLVK+FG +A + + YK G
Sbjct: 1 MATVPEPLIWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSG---------- 50
Query: 55 GRFCGNRGKKIKLKTVTIQPG--KDQVVVLATTKTKKQNKPIALLHKSVMKHEIHRMAKV 112
N+ KTVTIQP KD VVL+TTKTKKQN P L HKSVM+ E +MAK
Sbjct: 51 ---LANK------KTVTIQPSGVKDAAVVLSTTKTKKQNAPAKLYHKSVMRKEFRKMAKA 101
Query: 113 IANRVGDNYYQPDL 126
+ N+V DNYY+PDL
Sbjct: 102 VKNQVSDNYYRPDL 115
>pdb|4A18|O Chain O, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 1
pdb|4A1B|O Chain O, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 3.
pdb|4A1D|O Chain O, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 4.
pdb|4A19|O Chain O, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 2
Length = 134
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 14/19 (73%), Positives = 15/19 (78%)
Query: 7 QLIWEIVKKNNCFLVKEFG 25
QL+WEIVK NN FLVK G
Sbjct: 3 QLVWEIVKNNNAFLVKNNG 21
>pdb|1P7B|A Chain A, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|1P7B|B Chain B, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|2WLL|B Chain B, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 30.0 bits (66), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 31 AHAVITCSVYKFGGRKIECST-FVFGRFCGNRGKKIKLKTVTIQPGKDQVVVLATTKTKK 89
AHA+ T ++ G I ST VF RF R K + + ++P ++ ++ +
Sbjct: 123 AHAIATLEIF-VGMSGIALSTGLVFARFARPRAKIMFARHAIVRPFNGRMTLMVRAANAR 181
Query: 90 QN 91
QN
Sbjct: 182 QN 183
>pdb|2WLL|A Chain A, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 31 AHAVITCSVYKFGGRKIECST-FVFGRFCGNRGKKIKLKTVTIQPGKDQVVVLATTKTKK 89
AHA+ T ++ G I ST VF RF R K + + ++P ++ ++ +
Sbjct: 123 AHAIATLEIF-VGMSGIALSTGLVFARFARPRAKIMFARHAIVRPFNGRMTLMVRAANAR 181
Query: 90 QN 91
QN
Sbjct: 182 QN 183
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 29.6 bits (65), Expect = 0.54, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 5 GGQLIWEIVKKNNCFLVKEFGRGSASAHAVITCSVYKFGGR 45
G QL W+ V++N L+K+F GS +I+ + F +
Sbjct: 868 GQQLAWDFVRENWTHLLKKFDLGSYDIRMIISGTTAHFSSK 908
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 29.6 bits (65), Expect = 0.54, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 5 GGQLIWEIVKKNNCFLVKEFGRGSASAHAVITCSVYKFGGR 45
G QL W+ V++N L+K+F GS +I+ + F +
Sbjct: 868 GQQLAWDFVRENWTHLLKKFDLGSYDIRMIISGTTAHFSSK 908
>pdb|3Q3W|A Chain A, Isopropylmalate Isomerase Small Subunit From Campylobacter
Jejuni.
pdb|3Q3W|B Chain B, Isopropylmalate Isomerase Small Subunit From Campylobacter
Jejuni
Length = 203
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 14/94 (14%)
Query: 15 KNNCFLV--KEFGRGSASAHAVITCSVYKFGGRKIECSTF--VFGRFCGNRGKKIKLKTV 70
+N+ LV + FG GS+ HA ++ +G R I +F +F G +
Sbjct: 71 QNSSILVSFENFGSGSSREHA--PWALVDYGIRAIIAPSFADIFKNNALGNG------LL 122
Query: 71 TIQPGKDQV--VVLATTKTKKQNKPIALLHKSVM 102
TI+ KD+V +V K++ +N I+LL K V
Sbjct: 123 TIELAKDEVLEIVDELKKSQDKNIEISLLEKRVF 156
>pdb|2NV4|A Chain A, Crystal Structure Of Upf0066 Protein Af0241 In Complex
With S-Adenosylmethionine. Northeast Structural Genomics
Consortium Target Gr27
pdb|2NV4|B Chain B, Crystal Structure Of Upf0066 Protein Af0241 In Complex
With S-Adenosylmethionine. Northeast Structural Genomics
Consortium Target Gr27
Length = 147
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 25 GRGSASAHAVITCSVYKFGGRKIECSTFVFGRFCGNRGKKIKLKTVTIQPGKDQVVVLAT 84
GR S + + Y G KIE + + ++ + KL+ V PG+ + + T
Sbjct: 23 GRFSDAVSEIAIFDEYADGLHKIENLRHIIVLYWXDKASRDKLRVVP--PGETEERGVFT 80
Query: 85 TKTKKQNKPIALLHKSVMKHEIHRM 109
T++ + PI L +++ E +R+
Sbjct: 81 TRSPSRPNPIGLCVVEILEVERNRL 105
>pdb|3A9C|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 326
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 41 KFGGRKIECSTFVFGRFCGNRGKKIKLKTVTIQPGKDQVVVLATTKTKKQNK 92
+FG ++IE + C ++ +KT Q GKD V++ T+ K Q K
Sbjct: 123 EFGAKRIEDGDVIMTHXCHSKAAISVMKTAWEQ-GKDIKVIVTETRPKWQGK 173
>pdb|3A9C|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
pdb|3A9C|E Chain E, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 322
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 41 KFGGRKIECSTFVFGRFCGNRGKKIKLKTVTIQPGKDQVVVLATTKTKKQNK 92
+FG ++IE + C ++ +KT Q GKD V++ T+ K Q K
Sbjct: 116 EFGAKRIEDGDVIMTHXCHSKAAISVMKTAWEQ-GKDIKVIVTETRPKWQGK 166
>pdb|3A9C|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 321
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 41 KFGGRKIECSTFVFGRFCGNRGKKIKLKTVTIQPGKDQVVVLATTKTKKQNK 92
+FG ++IE + C ++ +KT Q GKD V++ T+ K Q K
Sbjct: 115 EFGAKRIEDGDVIMTHXCHSKAAISVMKTAWEQ-GKDIKVIVTETRPKWQGK 165
>pdb|3A9C|D Chain D, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
pdb|3A9C|F Chain F, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 323
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 41 KFGGRKIECSTFVFGRFCGNRGKKIKLKTVTIQPGKDQVVVLATTKTKKQNK 92
+FG ++IE + C ++ +KT Q GKD V++ T+ K Q K
Sbjct: 117 EFGAKRIEDGDVIMTHXCHSKAAISVMKTAWEQ-GKDIKVIVTETRPKWQGK 167
>pdb|3RJO|A Chain A, Crystal Structure Of Erap1 Peptide Binding Domain
Length = 419
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 4 VGGQLIWEIVKKNNCFLVKEFGRGSASAHAVITCSVYKFGGR 45
VG L W+ ++KN LV++F GS+S ++ + +F R
Sbjct: 316 VGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTR 357
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|B Chain B, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|C Chain C, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
Length = 921
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 4 VGGQLIWEIVKKNNCFLVKEFGRGSASAHAVITCSVYKFGGR 45
VG L W+ ++KN LV++F GS+S ++ + +F R
Sbjct: 808 VGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTR 849
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|B Chain B, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|C Chain C, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
Length = 954
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 4 VGGQLIWEIVKKNNCFLVKEFGRGSASAHAVITCSVYKFGGR 45
VG L W+ ++KN LV++F GS+S ++ + +F R
Sbjct: 850 VGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTR 891
>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human
Endoplasmic Reticulum Aminopeptidase 1 Erap1
Length = 897
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 4 VGGQLIWEIVKKNNCFLVKEFGRGSASAHAVITCSVYKFGGR 45
VG L W+ ++KN LV++F GS+S ++ + +F R
Sbjct: 799 VGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTR 840
>pdb|1BIK|A Chain A, X-Ray Structure Of Bikunin From The Human
Inter-Alpha-Inhibitor Complex
Length = 147
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 5 GGQLIWEIVKK-NNCFLVKEFGRGSASAHAVITCSVYKFGGRKIECSTFVFGRFCGN 60
GGQL+ E+ KK ++C L G ++ + S Y + G + C TF +G GN
Sbjct: 12 GGQLVTEVTKKEDSCQL------GYSAGPCMGMTSRYFYNGTSMACETFQYGGCMGN 62
>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3V5W|A Chain A, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 689
Score = 27.7 bits (60), Expect = 2.0, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 98 HKSVMKHEIHRMAKVIANRVGDNYYQPDLKNAVE 131
HK+ KHEI RM +A + D+ + P+L++ +E
Sbjct: 394 HKTKDKHEIDRMTLTMAVELPDS-FSPELRSLLE 426
>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1YM7|A Chain A, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|B Chain B, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|C Chain C, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|D Chain D, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|2BCJ|A Chain A, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|3UZS|A Chain A, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3UZT|A Chain A, Structure Of The C13.18 Rna Aptamer In Complex With G
Protein-Coupled Receptor Kinase 2
Length = 689
Score = 27.7 bits (60), Expect = 2.0, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 98 HKSVMKHEIHRMAKVIANRVGDNYYQPDLKNAVE 131
HK+ KHEI RM +A + D+ + P+L++ +E
Sbjct: 394 HKTKDKHEIDRMTLTMAVELPDS-FSPELRSLLE 426
>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
Length = 695
Score = 27.7 bits (60), Expect = 2.0, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 98 HKSVMKHEIHRMAKVIANRVGDNYYQPDLKNAVE 131
HK+ KHEI RM +A + D+ + P+L++ +E
Sbjct: 394 HKTKDKHEIDRMTLTMAVELPDS-FSPELRSLLE 426
>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
Length = 688
Score = 27.7 bits (60), Expect = 2.0, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 98 HKSVMKHEIHRMAKVIANRVGDNYYQPDLKNAVE 131
HK+ KHEI RM +A + D+ + P+L++ +E
Sbjct: 393 HKTKDKHEIDRMTLTMAVELPDS-FSPELRSLLE 425
>pdb|2WPN|A Chain A, Structure Of The Oxidised, As-Isolated Nifese Hydrogenase
From D. Vulgaris Hildenborough
Length = 317
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 21 VKEFGRGSASAHAVITCSVYKFGG----RKIECSTFVFGRFCGNRGKKIKLKTVT-IQPG 75
+KEFG +A+ AV TC+ Y GG E +F G+ G K + + P
Sbjct: 139 LKEFGPNAAAVLAVGTCAAY--GGIPAAEGSETGATAVSKFLGDNGIKTPVVNIPGCPPH 196
Query: 76 KDQV---VVLATTKTKKQ 90
D + VVLA KK
Sbjct: 197 PDWIVGTVVLALDAIKKN 214
>pdb|2XRF|A Chain A, Crystal Structure Of Human Uridine Phosphorylase 2
pdb|2XRF|B Chain B, Crystal Structure Of Human Uridine Phosphorylase 2
pdb|2XRF|C Chain C, Crystal Structure Of Human Uridine Phosphorylase 2
Length = 303
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 40 YKFGGRKIECSTFVFGRFCGNRGKKIKLKTVTI--QPGKDQVVVLATTKTKKQNKPIALL 97
+K G R IE + VF CG G K + VT+ + DQ+ + + Q +P L+
Sbjct: 225 FKAGVRNIEMESTVFAAMCGLCGLKAAVVCVTLLDRLDCDQINLPHDVLVEYQQRPQLLI 284
>pdb|3GOQ|A Chain A, Crystal Structure Of The Tyr13met Variant Of Bacillus
Subtilis Ferrochelatase
Length = 310
Score = 26.2 bits (56), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 111 KVIANRVGDNYYQPDLKNA 129
KV+ + +G +YY+P++ NA
Sbjct: 274 KVVTDDIGASYYRPEMPNA 292
>pdb|2H1V|A Chain A, Crystal Structure Of The Lys87ala Mutant Variant Of
Bacillus Subtilis Ferrochelatase
Length = 310
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 111 KVIANRVGDNYYQPDLKNA 129
KV+ + +G +YY+P++ NA
Sbjct: 274 KVVTDDIGASYYRPEMPNA 292
>pdb|2H1W|A Chain A, Crystal Structure Of The His183ala Mutant Variant Of
Bacillus Subtilis Ferrochelatase
Length = 310
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 111 KVIANRVGDNYYQPDLKNA 129
KV+ + +G +YY+P++ NA
Sbjct: 274 KVVTDDIGASYYRPEMPNA 292
>pdb|2AC2|A Chain A, Crystal Structure Of The Tyr13phe Mutant Variant Of
Bacillus Subtilis Ferrochelatase With Zn(2+) Bound At
The Active Site
Length = 309
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 111 KVIANRVGDNYYQPDLKNA 129
KV+ + +G +YY+P++ NA
Sbjct: 273 KVVTDDIGASYYRPEMPNA 291
>pdb|1C1H|A Chain A, Crystal Structure Of Bacillus Subtilis Ferrochelatase In
Complex With N-Methyl Mesoporphyrin
pdb|1LD3|A Chain A, Crystal Structure Of B. Subilis Ferrochelatase With Zn(2+)
Bound At The Active Site.
pdb|1N0I|A Chain A, Crystal Structure Of Ferrochelatase With Cadmium Bound At
Active Site
pdb|2HK6|A Chain A, Crystal Structure Of B. Subtilis Ferrochelatase With Iron
Bound At The Active Site
pdb|1AK1|A Chain A, Ferrochelatase From Bacillus Subtilis
Length = 310
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 111 KVIANRVGDNYYQPDLKNA 129
KV+ + +G +YY+P++ NA
Sbjct: 274 KVVTDDIGASYYRPEMPNA 292
>pdb|2Q3J|A Chain A, Crystal Structure Of The His183ala Variant Of Bacillus
Subtilis Ferrochelatase In Complex With N-Methyl
Mesoporphyrin
Length = 309
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 111 KVIANRVGDNYYQPDLKNA 129
KV+ + +G +YY+P++ NA
Sbjct: 273 KVVTDDIGASYYRPEMPNA 291
>pdb|2AC4|A Chain A, Crystal Structure Of The His183cys Mutant Variant Of
Bacillus Subtilis Ferrochelatase
pdb|2Q2O|A Chain A, Crystal Structure Of H183c Bacillus Subtilis
Ferrochelatase In Complex With Deuteroporphyrin Ix
2,4-Disulfonic Acid Dihydrochloride
Length = 309
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 111 KVIANRVGDNYYQPDLKNA 129
KV+ + +G +YY+P++ NA
Sbjct: 273 KVVTDDIGASYYRPEMPNA 291
>pdb|1DOZ|A Chain A, Crystal Structure Of Ferrochelatase
pdb|2Q2N|A Chain A, Crystal Structure Of Bacillus Subtilis Ferrochelatase In
Complex With Deuteroporphyrin Ix 2,4-Disulfonic Acid
Dihydrochloride
pdb|3M4Z|A Chain A, Crystal Structure Of B. Subtilis Ferrochelatase With
Cobalt Bound At The Active Site
Length = 309
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 111 KVIANRVGDNYYQPDLKNA 129
KV+ + +G +YY+P++ NA
Sbjct: 273 KVVTDDIGASYYRPEMPNA 291
>pdb|1C9E|A Chain A, Structure Of Ferrochelatase With Copper(Ii) N-
Methylmesoporphyrin Complex Bound At The Active Site
Length = 306
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 111 KVIANRVGDNYYQPDLKNA 129
KV+ + +G +YY+P++ NA
Sbjct: 270 KVVTDDIGASYYRPEMPNA 288
>pdb|3P0E|A Chain A, Structure Of Hupp2 In An Active Conformation With Bound 5-
Benzylacyclouridine
pdb|3P0E|B Chain B, Structure Of Hupp2 In An Active Conformation With Bound 5-
Benzylacyclouridine
pdb|3P0E|C Chain C, Structure Of Hupp2 In An Active Conformation With Bound 5-
Benzylacyclouridine
pdb|3P0E|D Chain D, Structure Of Hupp2 In An Active Conformation With Bound 5-
Benzylacyclouridine
pdb|3P0E|E Chain E, Structure Of Hupp2 In An Active Conformation With Bound 5-
Benzylacyclouridine
pdb|3P0E|F Chain F, Structure Of Hupp2 In An Active Conformation With Bound 5-
Benzylacyclouridine
pdb|3P0F|A Chain A, Structure Of Hupp2 In An Inactive Conformation With Bound
5- Benzylacyclouridine
Length = 297
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 40 YKFGGRKIECSTFVFGRFCGNRGKKIKLKTVTI--QPGKDQVVVLATTKTKKQNKPIALL 97
+K G R IE + VF CG G K + VT+ + DQ+ + + Q +P L+
Sbjct: 229 FKAGVRNIEMESTVFAAMCGLCGLKAAVVCVTLLDRLDCDQINLPHDVLVEYQQRPQLLI 288
>pdb|2C8J|A Chain A, Crystal Structure Of Ferrochelatase Hemh-1 From Bacillus
Anthracis, Str. Ames
pdb|2C8J|B Chain B, Crystal Structure Of Ferrochelatase Hemh-1 From Bacillus
Anthracis, Str. Ames
Length = 311
Score = 25.8 bits (55), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 111 KVIANRVGDNYYQPDLKNA 129
KV+ + +G YY+P++ NA
Sbjct: 273 KVVTDEIGAKYYRPEMPNA 291
>pdb|2ABX|A Chain A, The Crystal Structure Of Alpha-Bungarotoxin At 2.5
Angstroms Resolution. Relation To Solution Structure
And Binding To Acetylcholine Receptor
pdb|2ABX|B Chain B, The Crystal Structure Of Alpha-Bungarotoxin At 2.5
Angstroms Resolution. Relation To Solution Structure
And Binding To Acetylcholine Receptor
Length = 74
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 57 FCGNRGKKIKLKTVTIQPGKDQVVVLATTKTKKQNKP 93
FC +RGK ++L P K + T K N P
Sbjct: 32 FCSSRGKVVELGCAATCPSKKPYEEVTCCSTDKCNHP 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,835,668
Number of Sequences: 62578
Number of extensions: 133547
Number of successful extensions: 337
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 310
Number of HSP's gapped (non-prelim): 41
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)