BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040088
(131 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M0E2|RL282_ARATH 60S ribosomal protein L28-2 OS=Arabidopsis thaliana GN=RPL28C PE=2
SV=1
Length = 143
Score = 126 bits (316), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/136 (52%), Positives = 89/136 (65%), Gaps = 26/136 (19%)
Query: 1 MATVGGQLIWEIVKKNNCFLVKEFGRGSA------SAHAVITCSVYKFGGRKIECSTFVF 54
MATV GQLIWEIVK+NNCFLVK+FGRG+A ++ ++ + YK G
Sbjct: 1 MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSG---------- 50
Query: 55 GRFCGNRGKKIKLKTVTIQP-GKDQVVVLATTKTKKQNKPIALLHKSVMKHEIHRMAKVI 113
N+ KTVTIQ GKDQ VVL TTKTK+QNKP ++KS++K E RM+KV+
Sbjct: 51 ---LANK------KTVTIQAAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVV 101
Query: 114 ANRVGDNYYQPDLKNA 129
AN+V DNYY+PDLK A
Sbjct: 102 ANQVVDNYYRPDLKKA 117
>sp|O82204|RL281_ARATH 60S ribosomal protein L28-1 OS=Arabidopsis thaliana GN=RPL28A PE=1
SV=1
Length = 143
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 71/137 (51%), Positives = 83/137 (60%), Gaps = 26/137 (18%)
Query: 1 MATVGGQLIWEIVKKNNCFLVKEFGRG------SASAHAVITCSVYKFGGRKIECSTFVF 54
MATV GQLIWEIVK NNCFLVK+FGRG S + + YK G
Sbjct: 1 MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSG---------- 50
Query: 55 GRFCGNRGKKIKLKTVTIQPG-KDQVVVLATTKTKKQNKPIALLHKSVMKHEIHRMAKVI 113
N+ KTVTIQ KDQ VVLATTKTKKQNKP ++KS++K E RM+K +
Sbjct: 51 ---LANK------KTVTIQAADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAV 101
Query: 114 ANRVGDNYYQPDLKNAV 130
AN+V DNYY+PDLK A
Sbjct: 102 ANQVVDNYYRPDLKKAA 118
>sp|O14069|RL28E_SCHPO Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpl28e PE=1 SV=1
Length = 134
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 54/128 (42%), Gaps = 21/128 (16%)
Query: 3 TVGGQLIWEIVKKNNCFLVK--EFGRGSASAHAVITCSVYKFGGRKIECSTFVFGRFCGN 60
+V LIW++++ NN FLVK EFG +F + S RF G
Sbjct: 2 SVSNDLIWQVIRDNNRFLVKRPEFG-------------GIQFNREPVNVSGKNAQRFSG- 47
Query: 61 RGKKIKLKTVTIQPGKDQVVVLAT-TKTKKQNKPIALLHKSVMKHEIHRMA-KVIANRVG 118
K V +Q + VVL T T K KP L K V+ + R K IA R+G
Sbjct: 48 ---LCNDKAVGVQANSPRGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIG 104
Query: 119 DNYYQPDL 126
Y+ DL
Sbjct: 105 RTGYRDDL 112
>sp|P0DJ20|RL28_TETTH 60S ribosomal protein L28 OS=Tetrahymena thermophila GN=RPL28
PE=1 SV=1
Length = 134
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/19 (73%), Positives = 15/19 (78%)
Query: 7 QLIWEIVKKNNCFLVKEFG 25
QL+WEIVK NN FLVK G
Sbjct: 3 QLVWEIVKNNNAFLVKNNG 21
>sp|A6LK88|PLSX_THEM4 Phosphate acyltransferase OS=Thermosipho melanesiensis (strain
BI429 / DSM 12029) GN=plsX PE=3 SV=1
Length = 333
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 44 GRKIECSTFVFGRFCGNRGKKIKLKTVTIQ-PGKDQVVVLATTKTKKQNKPIALLHKSVM 102
G + C+TFV GR K I+ T+ + P KD VLA KP LL VM
Sbjct: 100 GALLACATFVVGRM-----KNIERPTLAVPIPTKDGFCVLADAGANIDVKPSTLLQFGVM 154
Query: 103 KHEIHRMAKVIANRVG 118
E + + +VG
Sbjct: 155 GVEYAKFLGIKNPKVG 170
>sp|Q5RFP3|ERAP2_PONAB Endoplasmic reticulum aminopeptidase 2 OS=Pongo abelii GN=ERAP2
PE=2 SV=1
Length = 960
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 5 GGQLIWEIVKKNNCFLVKEFGRGSASAHAVITCSVYKFGGR 45
G QL W+ V++N L+K+F GS +I+ + +F +
Sbjct: 868 GQQLAWDFVRENWTHLLKKFDLGSFDIRMIISGTTARFSSK 908
>sp|P02760|AMBP_HUMAN Protein AMBP OS=Homo sapiens GN=AMBP PE=1 SV=1
Length = 352
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 5 GGQLIWEIVKK-NNCFLVKEFGRGSASAHAVITCSVYKFGGRKIECSTFVFGRFCGN 60
GGQL+ E+ KK ++C L G ++ + S Y + G + C TF +G GN
Sbjct: 217 GGQLVTEVTKKEDSCQL------GYSAGPCMGMTSRYFYNGTSMACETFQYGGCMGN 267
>sp|O07639|FTSW_BACSU Lipid II flippase FtsW OS=Bacillus subtilis (strain 168) GN=ftsW
PE=1 SV=1
Length = 403
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 50 STFVFGRFCGNRGKKIKLKTVTIQPGK--DQVVV--LATTKTKKQN 91
S FVFG GN K+ ++IQPG+ VV+ LA KKQ+
Sbjct: 92 SLFVFGHVAGNAQSWFKIGGMSIQPGEFVKLVVILYLAAVYAKKQS 137
>sp|Q6P179|ERAP2_HUMAN Endoplasmic reticulum aminopeptidase 2 OS=Homo sapiens GN=ERAP2
PE=1 SV=2
Length = 960
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 5 GGQLIWEIVKKNNCFLVKEFGRGSASAHAVITCSVYKFGGR 45
G QL W+ V++N L+K+F GS +I+ + F +
Sbjct: 868 GQQLAWDFVRENWTHLLKKFDLGSYDIRMIISGTTAHFSSK 908
>sp|Q9V2G4|RFCS_PYRAB Replication factor C small subunit OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rfcS PE=1 SV=1
Length = 1437
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 3 TVGGQLIWEIVKKNNCFLVKEFGRGSASAHAVITCSV-YKFGGRKIE 48
T G + E +KK N F+ +EF RG A C Y F G K+E
Sbjct: 1025 TKKGYTVPEWIKKGNLFVKREFLRGLFGADGTKPCGKRYNFNGIKLE 1071
>sp|Q9VEN1|FLNA_DROME Filamin-A OS=Drosophila melanogaster GN=cher PE=1 SV=2
Length = 2210
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 12 IVKKNNCFLVKEFGRGSASAHAVITCSVYKFGGRKIECSTFVFGRFCGNRGKKIKLKTV 70
+ K NC + A +V+TC V KF ++ CS FV F + K+K+K V
Sbjct: 1080 VEDKGNCIYAVHYV--PPKAGSVLTCQV-KFSEVEVPCSPFVMTVFPKSEPTKVKVKGV 1135
>sp|Q8BGT9|GLT12_MOUSE Polypeptide N-acetylgalactosaminyltransferase 12 OS=Mus musculus
GN=Galnt12 PE=2 SV=1
Length = 576
Score = 28.9 bits (63), Expect = 9.6, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 70 VTIQPGKDQVVVLATTKTKKQNKPIALLHKSVMKHEIHRMAKVIANRVGDNYYQPDLKN 128
+T++ GKD +V+ +T +N+ L + H+ R +V DN + P L++
Sbjct: 502 ITVEDGKDTLVMDLCRETVPENQEFILQEDGTLVHKHSRKCVEATEKVLDNGFAPYLRD 560
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,114,481
Number of Sequences: 539616
Number of extensions: 1737077
Number of successful extensions: 3388
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 3379
Number of HSP's gapped (non-prelim): 17
length of query: 131
length of database: 191,569,459
effective HSP length: 97
effective length of query: 34
effective length of database: 139,226,707
effective search space: 4733708038
effective search space used: 4733708038
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)