Query 040088
Match_columns 131
No_of_seqs 112 out of 241
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 07:30:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040088.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040088hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qpza1 a.35.1.5 (A:2-58) Puri 16.2 26 0.0019 20.5 1.2 21 108-128 30-50 (57)
2 d2qsba1 a.29.14.1 (A:2-86) Unc 13.5 45 0.0033 21.3 2.0 29 101-129 23-51 (85)
3 d1efaa1 a.35.1.5 (A:2-60) Lac 12.6 38 0.0027 19.9 1.2 21 108-128 32-52 (59)
4 d2hsga1 a.35.1.5 (A:2-58) Gluc 12.3 40 0.0029 19.6 1.3 21 108-128 31-51 (57)
5 d2qzga1 a.29.14.1 (A:4-91) Unc 10.6 59 0.0043 20.8 1.8 29 101-129 25-53 (88)
6 d1r8ea2 d.60.1.1 (A:121-277) M 8.8 1.2E+02 0.0087 19.3 3.0 33 93-125 93-128 (157)
7 d1uxda_ a.35.1.5 (A:) Fructose 8.2 45 0.0033 19.4 0.4 21 108-128 33-53 (59)
8 d1jhfa1 a.4.5.2 (A:2-72) LexA 8.1 54 0.0039 19.3 0.8 25 106-130 7-31 (71)
9 d1zo2a1 d.17.4.2 (A:10-126) Nu 7.6 2.5E+02 0.018 17.0 4.1 33 67-99 62-95 (117)
10 d1eh9a2 b.71.1.1 (A:491-557) G 6.6 1.1E+02 0.008 18.7 1.7 18 8-25 11-28 (67)
No 1
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=16.18 E-value=26 Score=20.47 Aligned_cols=21 Identities=10% Similarity=0.178 Sum_probs=14.6
Q ss_pred HHHHHHHHHhcCCCCChhhhh
Q 040088 108 RMAKVIANRVGDNYYQPDLKN 128 (131)
Q Consensus 108 r~~k~I~~~v~~n~YRpDL~~ 128 (131)
.+.+.|...+.+-||+||...
T Consensus 30 ~tr~rV~~~a~~lgY~pn~~A 50 (57)
T d1qpza1 30 ETRNAVWAAIKELHYSPSAVA 50 (57)
T ss_dssp HHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHH
Confidence 445556666667789999754
No 2
>d2qsba1 a.29.14.1 (A:2-86) Uncharacterized protein Ta0600 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=13.49 E-value=45 Score=21.32 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=24.5
Q ss_pred eeccchhHHHHHHHHHhcCCCCChhhhhh
Q 040088 101 VMKHEIHRMAKVIANRVGDNYYQPDLKNA 129 (131)
Q Consensus 101 ~~k~~~Rr~~k~I~~~v~~n~YRpDL~~a 129 (131)
+..++.||.+......+....|-+|+|.+
T Consensus 23 sVPRNIRr~a~e~~~~L~n~~~~~~vRaa 51 (85)
T d2qsba1 23 TVPKNVRKVAQDSKAKLSQENESLDLRCA 51 (85)
T ss_dssp TSCHHHHHHHHHHHHHHTCTTSCHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHCCCcchhHHHH
Confidence 44578999999998888888899999875
No 3
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=12.62 E-value=38 Score=19.90 Aligned_cols=21 Identities=10% Similarity=0.241 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCCCCChhhhh
Q 040088 108 RMAKVIANRVGDNYYQPDLKN 128 (131)
Q Consensus 108 r~~k~I~~~v~~n~YRpDL~~ 128 (131)
.+.+.|...+.+.||+||...
T Consensus 32 ~tr~rI~~~a~~lgY~pn~~A 52 (59)
T d1efaa1 32 KTREKVEAAMAELNYIPNRVA 52 (59)
T ss_dssp HHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHHHHHHCCCcCHHH
Confidence 455667777777889998754
No 4
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=12.33 E-value=40 Score=19.57 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCCCCChhhhh
Q 040088 108 RMAKVIANRVGDNYYQPDLKN 128 (131)
Q Consensus 108 r~~k~I~~~v~~n~YRpDL~~ 128 (131)
.+-..|...+.+-||+||...
T Consensus 31 ~tr~rV~~aa~~lgY~pn~~A 51 (57)
T d2hsga1 31 STRKKVLETIERLGYRPNAVA 51 (57)
T ss_dssp HHHHHHHHHHHHHTCCSCHHH
T ss_pred HHHHHHHHHHHHHCcCCCHHH
Confidence 445556666667789999743
No 5
>d2qzga1 a.29.14.1 (A:4-91) Uncharacterized protein MMP1188 {Methanococcus maripaludis [TaxId: 39152]}
Probab=10.60 E-value=59 Score=20.84 Aligned_cols=29 Identities=14% Similarity=0.129 Sum_probs=24.4
Q ss_pred eeccchhHHHHHHHHHhcCCCCChhhhhh
Q 040088 101 VMKHEIHRMAKVIANRVGDNYYQPDLKNA 129 (131)
Q Consensus 101 ~~k~~~Rr~~k~I~~~v~~n~YRpDL~~a 129 (131)
++.++.|+.+..+.+.+....|-+|+|.+
T Consensus 25 sVPRNIRr~a~~~~~~L~n~~~~~~vRaa 53 (88)
T d2qzga1 25 TVPRNIRAAADNAKNALHNEEQELIVRSA 53 (88)
T ss_dssp TSCHHHHHHHHHHHHHTTCTTSCHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHCCCcchhHHHH
Confidence 44578999999999988888899999875
No 6
>d1r8ea2 d.60.1.1 (A:121-277) Multidrug-binding domain of transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=8.85 E-value=1.2e+02 Score=19.33 Aligned_cols=33 Identities=6% Similarity=-0.038 Sum_probs=26.1
Q ss_pred Ccceeeeeeecc---chhHHHHHHHHHhcCCCCChh
Q 040088 93 PIALLHKSVMKH---EIHRMAKVIANRVGDNYYQPD 125 (131)
Q Consensus 93 Pak~~~~~~~k~---~~Rr~~k~I~~~v~~n~YRpD 125 (131)
|+-.+....+.. +...++..+.+.+.+++|+.+
T Consensus 93 p~G~ya~~~~~G~y~~~~~~y~~l~~~~~~~g~~~~ 128 (157)
T d1r8ea2 93 PKGRYACIAYNFSPEHYFLNLQKLIKYIADRQLTVV 128 (157)
T ss_dssp CSEEEEEEEEECCHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEEEEEEECccchHHHHHHHHHHHHhcCcCcC
Confidence 666677777763 567889999999999999964
No 7
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=8.17 E-value=45 Score=19.36 Aligned_cols=21 Identities=14% Similarity=0.355 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCCCCChhhhh
Q 040088 108 RMAKVIANRVGDNYYQPDLKN 128 (131)
Q Consensus 108 r~~k~I~~~v~~n~YRpDL~~ 128 (131)
.+...|...+.+-+|+|+...
T Consensus 33 ~tr~rV~~~a~~lgY~pn~~A 53 (59)
T d1uxda_ 33 KTVEKVMAVVREHNYHPNAVA 53 (59)
T ss_dssp TTHHHHHHHHHHHTCCCCSCC
T ss_pred HHHHHHHHHHHHHCCCcCHHH
Confidence 345556666666779998653
No 8
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=8.12 E-value=54 Score=19.27 Aligned_cols=25 Identities=8% Similarity=0.178 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHhcCCCCChhhhhhh
Q 040088 106 IHRMAKVIANRVGDNYYQPDLKNAV 130 (131)
Q Consensus 106 ~Rr~~k~I~~~v~~n~YRpDL~~aA 130 (131)
-++++..|.....++||=|-++..|
T Consensus 7 Q~~vL~~I~~~~~~~G~~Ps~rei~ 31 (71)
T d1jhfa1 7 QQEVFDLIRDHISQTGMPPTRAEIA 31 (71)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 4678889999999999999887765
No 9
>d1zo2a1 d.17.4.2 (A:10-126) Nuclear transport factor-2 (NTF2) {Cryptosporidium parvum [TaxId: 5807]}
Probab=7.64 E-value=2.5e+02 Score=17.04 Aligned_cols=33 Identities=15% Similarity=0.274 Sum_probs=17.5
Q ss_pred cceEEEEeC-CCCeEEEEEeccCCCCCCcceeee
Q 040088 67 LKTVTIQPG-KDQVVVLATTKTKKQNKPIALLHK 99 (131)
Q Consensus 67 ~KaV~V~~~-~~~gVvl~tkk~k~~~kPak~~~~ 99 (131)
-.+++.||. +++-+++++-.-+....|...+..
T Consensus 62 i~~~D~Qp~~~~~ili~V~G~~~~~~~~~~~F~q 95 (117)
T d1zo2a1 62 ITRVDCQPSPNNGSIVFVTGDVRIDDGQPLKFSQ 95 (117)
T ss_dssp EEEEEEEECTBSSEEEEEEEEEEETTCCCEEEEE
T ss_pred EeeEEEEEcCCCCEEEEEEEEEEeCCCCcceeEE
Confidence 456999994 444455555433333444444443
No 10
>d1eh9a2 b.71.1.1 (A:491-557) Glycosyltrehalose trehalohydrolase {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]}
Probab=6.60 E-value=1.1e+02 Score=18.71 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=14.9
Q ss_pred ceEEEEecCceeEEeecC
Q 040088 8 LIWEIVKKNNCFLVKEFG 25 (131)
Q Consensus 8 L~W~iVrnnnsFLvK~~g 25 (131)
=.|++|+.+-+|++=-+.
T Consensus 11 ~~Wl~i~~~~~l~v~~Fs 28 (67)
T d1eh9a2 11 ENWLIIKGREYFSLYVFS 28 (67)
T ss_dssp TTEEEEECSSCCEEEESS
T ss_pred ceEEEEcCCcEEEEEEEc
Confidence 359999999999987664
Done!