Query 040090
Match_columns 112
No_of_seqs 124 out of 182
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 05:01:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040090.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040090hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00477 LEA_5: Small hydrophi 100.0 2E-50 4.3E-55 293.0 7.5 108 1-108 1-109 (109)
2 PF00477 LEA_5: Small hydrophi 99.6 3.5E-16 7.7E-21 114.1 1.5 63 42-104 23-85 (109)
3 COG3729 GsiB General stress pr 99.3 6.3E-13 1.4E-17 91.6 1.5 58 31-88 6-65 (73)
4 COG3729 GsiB General stress pr 99.3 2.3E-12 5.1E-17 88.8 2.0 57 46-102 1-59 (73)
5 PF10685 KGG: Stress-induced b 96.7 0.00076 1.7E-08 37.6 1.1 18 70-87 4-21 (23)
6 PF10685 KGG: Stress-induced b 96.3 0.0014 3.1E-08 36.5 0.7 19 49-67 3-21 (23)
7 cd04435 DEP_fRom2 DEP (Disheve 37.3 13 0.00028 26.4 0.3 13 27-39 54-66 (82)
8 PRK12446 undecaprenyldiphospho 16.8 76 0.0016 25.8 1.2 23 20-42 6-28 (352)
9 PF14703 DUF4463: Domain of un 13.9 1.5E+02 0.0032 18.8 1.9 16 23-38 64-79 (85)
10 PHA02291 hypothetical protein 12.8 95 0.0021 23.7 0.8 14 19-32 78-91 (132)
No 1
>PF00477 LEA_5: Small hydrophilic plant seed protein; InterPro: IPR000389 This entry contains a number of bacterial proteins annotated as stress-induced and members of the plant LEA (late embryogenesis abundant) proteins, which are small hydrophilic plant seed proteins that are structurally related. These proteins contains from 83 to 153 amino acid residues and may play a role [, ] in equipping the seed for survival, maintaining a minimal level of hydration in the dry organism and preventing the denaturation of cytoplasmic components. They may also play a role during imbibition by controlling water uptake.
Probab=100.00 E-value=2e-50 Score=292.98 Aligned_cols=108 Identities=71% Similarity=1.085 Sum_probs=106.8
Q ss_pred Ccc-hhhhHHHHHHHhcCCccccCCCCCcchhHHHHHHHhhhccchhhhhhhchhhHHhhhccccchhhhhcCchhHHHh
Q 040090 1 MAS-QQGRKELDTRARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYQEMGHRGGQMRREQMGSEGYQEM 79 (112)
Q Consensus 1 m~~-~~~~~eld~~a~~getvv~ggtgg~s~~aqEfy~E~G~KGGeats~~~G~efY~EiG~KGGeat~e~~g~efYeEi 79 (112)
||| |++|++||++||+|+|||||||||+||+||++++|+|+|||++|+++||+|||++||+|||++|+++|+++||++|
T Consensus 1 ma~~q~~r~eld~~aregetvv~gGtggksl~aqe~laEggkKGGetr~e~~G~E~YqEiG~KGGe~t~e~~g~EfY~ei 80 (109)
T PF00477_consen 1 MASGQESREELDARAREGETVVPGGTGGKSLEAQERLAEGGKKGGETRKEQHGKEFYQEIGKKGGEATKEKHGKEFYEEI 80 (109)
T ss_pred CcchhHHHHHHHHHHhcCCccccCCCCCCcchHHHHHHHHHhhcccchhhhcchhHHHHHhhccCccchhhhchHHHHHH
Confidence 899 6699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCccccccCCchhHHhhCCccCcccc
Q 040090 80 GRKGGLSTIDKSGGERAAEEGIEIDESKY 108 (112)
Q Consensus 80 G~KGG~a~~~~~g~efyeE~G~~~de~~~ 108 (112)
|||||+++++++|.|+++++||+||||||
T Consensus 81 GrKGG~~~~~~~g~era~~eg~~~de~~~ 109 (109)
T PF00477_consen 81 GRKGGEATSDKSGGERAAEEGIEIDESKF 109 (109)
T ss_pred HHhhCcccccccchHHHHHcCCCcccccC
Confidence 99999999999999999999999999998
No 2
>PF00477 LEA_5: Small hydrophilic plant seed protein; InterPro: IPR000389 This entry contains a number of bacterial proteins annotated as stress-induced and members of the plant LEA (late embryogenesis abundant) proteins, which are small hydrophilic plant seed proteins that are structurally related. These proteins contains from 83 to 153 amino acid residues and may play a role [, ] in equipping the seed for survival, maintaining a minimal level of hydration in the dry organism and preventing the denaturation of cytoplasmic components. They may also play a role during imbibition by controlling water uptake.
Probab=99.58 E-value=3.5e-16 Score=114.15 Aligned_cols=63 Identities=40% Similarity=0.560 Sum_probs=54.8
Q ss_pred ccchhhhhhhchhhHHhhhccccchhhhhcCchhHHHhhhcCCccccccCCchhHHhhCCccC
Q 040090 42 RGGQTRREQLGTEGYQEMGHRGGQMRREQMGSEGYQEMGRKGGLSTIDKSGGERAAEEGIEID 104 (112)
Q Consensus 42 KGGeats~~~G~efY~EiG~KGGeat~e~~g~efYeEiG~KGG~a~~~~~g~efyeE~G~~~d 104 (112)
+||...+..+..+++.|.|+|||++++++||++||++||+|||++++++|+++||++||+.=-
T Consensus 23 ~gGtggksl~aqe~laEggkKGGetr~e~~G~E~YqEiG~KGGe~t~e~~g~EfY~eiGrKGG 85 (109)
T PF00477_consen 23 PGGTGGKSLEAQERLAEGGKKGGETRKEQHGKEFYQEIGKKGGEATKEKHGKEFYEEIGRKGG 85 (109)
T ss_pred cCCCCCCcchHHHHHHHHHhhcccchhhhcchhHHHHHhhccCccchhhhchHHHHHHHHhhC
Confidence 356666777888999999999999999999999999999999999999999999999987533
No 3
>COG3729 GsiB General stress protein [General function prediction only]
Probab=99.30 E-value=6.3e-13 Score=91.61 Aligned_cols=58 Identities=28% Similarity=0.408 Sum_probs=50.2
Q ss_pred hHHHHHHHhhhccchhhhhhhchhhHHhhhccccchhh--hhcCchhHHHhhhcCCcccc
Q 040090 31 EAQEHLAEGRSRGGQTRREQLGTEGYQEMGHRGGQMRR--EQMGSEGYQEMGRKGGLSTI 88 (112)
Q Consensus 31 ~aqEfy~E~G~KGGeats~~~G~efY~EiG~KGGeat~--e~~g~efYeEiG~KGG~a~~ 88 (112)
.+.+||+++.++||+.....+++++|+|||+|||+.+- ..+++++|+++|+|||+.+.
T Consensus 6 ~~~ef~~~~~~~gGr~g~~a~D~e~~~EigrkGGq~sgg~f~~D~e~a~eaG~KGG~~s~ 65 (73)
T COG3729 6 HAKEFYQMAEHRGGRSGNFAEDRERASEIGRKGGQHSGGNFKNDPQRASEAGKKGGQPSH 65 (73)
T ss_pred cccccchhhhcccccccccccCHHHHHHHHHhccccCCCccccCHHHHHHhccccCCccc
Confidence 45689999999999999999999999999999999874 45689999999999998774
No 4
>COG3729 GsiB General stress protein [General function prediction only]
Probab=99.25 E-value=2.3e-12 Score=88.81 Aligned_cols=57 Identities=33% Similarity=0.429 Sum_probs=52.9
Q ss_pred hhhhhhchhhHHhhhccccchhhhhcCchhHHHhhhcCCccccc--cCCchhHHhhCCc
Q 040090 46 TRREQLGTEGYQEMGHRGGQMRREQMGSEGYQEMGRKGGLSTID--KSGGERAAEEGIE 102 (112)
Q Consensus 46 ats~~~G~efY~EiG~KGGeat~e~~g~efYeEiG~KGG~a~~~--~~g~efyeE~G~~ 102 (112)
+|+..|.++||++++++||+...-.+++++|+|||+|||+.+.. ++|+++|+|+|..
T Consensus 1 ~tsk~~~~ef~~~~~~~gGr~g~~a~D~e~~~EigrkGGq~sgg~f~~D~e~a~eaG~K 59 (73)
T COG3729 1 ATSKGHAKEFYQMAEHRGGRSGNFAEDRERASEIGRKGGQHSGGNFKNDPQRASEAGKK 59 (73)
T ss_pred CCCcccccccchhhhcccccccccccCHHHHHHHHHhccccCCCccccCHHHHHHhccc
Confidence 57889999999999999999999999999999999999999865 7899999999953
No 5
>PF10685 KGG: Stress-induced bacterial acidophilic repeat motif; InterPro: IPR019626 This repeat contains a highly conserved, characteristic sequence motif, KGG, that is recognised by plants and lower eukaryotes. Further downstream from this motif is a Walker A, nucleotide binding motif. YciG is expressed as part of a three-gene operon, yciGFE and this operon is induced by stress and is regulated by RpoS, which controls the general stress-response in E coli. YciG was shown to be important for stationary-phase resistance to thermal stress and in particular to acid stress [].
Probab=96.69 E-value=0.00076 Score=37.64 Aligned_cols=18 Identities=44% Similarity=0.770 Sum_probs=11.8
Q ss_pred hcCchhHHHhhhcCCccc
Q 040090 70 QMGSEGYQEMGRKGGLST 87 (112)
Q Consensus 70 ~~g~efYeEiG~KGG~a~ 87 (112)
+++++++.|||+|||+++
T Consensus 4 ~~d~e~~~eig~kGG~as 21 (23)
T PF10685_consen 4 SMDPEKAREIGRKGGQAS 21 (23)
T ss_pred ccCHHHHHHHHHhcCccc
Confidence 456667777777777654
No 6
>PF10685 KGG: Stress-induced bacterial acidophilic repeat motif; InterPro: IPR019626 This repeat contains a highly conserved, characteristic sequence motif, KGG, that is recognised by plants and lower eukaryotes. Further downstream from this motif is a Walker A, nucleotide binding motif. YciG is expressed as part of a three-gene operon, yciGFE and this operon is induced by stress and is regulated by RpoS, which controls the general stress-response in E coli. YciG was shown to be important for stationary-phase resistance to thermal stress and in particular to acid stress [].
Probab=96.34 E-value=0.0014 Score=36.52 Aligned_cols=19 Identities=32% Similarity=0.632 Sum_probs=15.6
Q ss_pred hhhchhhHHhhhccccchh
Q 040090 49 EQLGTEGYQEMGHRGGQMR 67 (112)
Q Consensus 49 ~~~G~efY~EiG~KGGeat 67 (112)
.++++|+++|||+|||+++
T Consensus 3 a~~d~e~~~eig~kGG~as 21 (23)
T PF10685_consen 3 ASMDPEKAREIGRKGGQAS 21 (23)
T ss_pred cccCHHHHHHHHHhcCccc
Confidence 3578899999999999875
No 7
>cd04435 DEP_fRom2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) Rom2-like proteins. Rom2-like proteins share a common domain architecture, containing, beside the RhoGEF domain, a DEP, a PH (pleckstrin homology) and a CNH domain. Rom2, a yeast GEF for Rho1 and Rho2, is involved in mediating stress response via the Ras-cAMP pathway and also plays a role in mediating resistance to sphingolipid disturbances.
Probab=37.27 E-value=13 Score=26.45 Aligned_cols=13 Identities=38% Similarity=0.641 Sum_probs=11.3
Q ss_pred CcchhHHHHHHHh
Q 040090 27 GKSLEAQEHLAEG 39 (112)
Q Consensus 27 g~s~~aqEfy~E~ 39 (112)
|+||+||.|+.+.
T Consensus 54 gRsLdaQkfFhdV 66 (82)
T cd04435 54 GRSLDAQKFFHDV 66 (82)
T ss_pred HHHHHHhHhhhhc
Confidence 6899999999874
No 8
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=16.76 E-value=76 Score=25.78 Aligned_cols=23 Identities=13% Similarity=0.185 Sum_probs=19.8
Q ss_pred cccCCCCCcchhHHHHHHHhhhc
Q 040090 20 VVPGGTGGKSLEAQEHLAEGRSR 42 (112)
Q Consensus 20 vv~ggtgg~s~~aqEfy~E~G~K 42 (112)
++.|||||-..-|....++.-++
T Consensus 6 ~~~GGTGGHi~Pala~a~~l~~~ 28 (352)
T PRK12446 6 FTGGGSAGHVTPNLAIIPYLKED 28 (352)
T ss_pred EEcCCcHHHHHHHHHHHHHHHhC
Confidence 57899999999999998888654
No 9
>PF14703 DUF4463: Domain of unknown function (DUF4463)
Probab=13.94 E-value=1.5e+02 Score=18.85 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=12.9
Q ss_pred CCCCCcchhHHHHHHH
Q 040090 23 GGTGGKSLEAQEHLAE 38 (112)
Q Consensus 23 ggtgg~s~~aqEfy~E 38 (112)
|=.||+.+||-+||++
T Consensus 64 ~~~g~~kVDaIdyy~~ 79 (85)
T PF14703_consen 64 GLFGGKKVDAIDYYRE 79 (85)
T ss_pred CCCCCCcchHHHHHHH
Confidence 4455699999999986
No 10
>PHA02291 hypothetical protein
Probab=12.80 E-value=95 Score=23.70 Aligned_cols=14 Identities=43% Similarity=0.795 Sum_probs=12.3
Q ss_pred ccccCCCCCcchhH
Q 040090 19 TVVPGGTGGKSLEA 32 (112)
Q Consensus 19 tvv~ggtgg~s~~a 32 (112)
+-.||.|||++++-
T Consensus 78 ~~LPGRT~~~sID~ 91 (132)
T PHA02291 78 TYLPGRTGDNSIDM 91 (132)
T ss_pred ccCCCCCCCcccce
Confidence 67899999999974
Done!