Query 040090
Match_columns 112
No_of_seqs 124 out of 182
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 07:31:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040090.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040090hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g1k_A Triosephosphate isomera 8.6 1.2E+02 0.0042 23.8 1.3 15 25-39 254-268 (272)
2 3ta6_A Triosephosphate isomera 8.6 1.2E+02 0.0042 23.7 1.3 15 25-39 238-252 (267)
3 3kxq_A Triosephosphate isomera 7.7 1.3E+02 0.0045 23.8 1.1 15 25-39 255-269 (275)
4 2p10_A MLL9387 protein; putati 7.0 1.7E+02 0.0058 23.5 1.4 29 4-33 14-42 (286)
5 3m9y_A Triosephosphate isomera 7.0 1.5E+02 0.0051 23.0 1.1 15 25-39 236-250 (254)
6 3s2u_A UDP-N-acetylglucosamine 6.9 1.4E+02 0.0049 22.4 0.9 26 20-45 7-32 (365)
7 1wwz_A Hypothetical protein PH 6.0 3.1E+02 0.011 17.1 2.0 13 28-40 128-140 (159)
8 1j5p_A Aspartate dehydrogenase 5.9 4E+02 0.014 20.4 3.0 29 3-33 97-128 (253)
9 1us5_A Putative GLUR0 ligand b 5.9 2.1E+02 0.007 20.1 1.2 10 31-40 302-311 (314)
10 1k44_A Nucleoside diphosphate 5.7 1.9E+02 0.0064 20.1 0.9 8 31-38 45-52 (136)
No 1
>4g1k_A Triosephosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel, TPIA; 2.35A {Burkholderia thailandensis}
Probab=8.62 E-value=1.2e+02 Score=23.84 Aligned_cols=15 Identities=40% Similarity=0.534 Sum_probs=12.6
Q ss_pred CCCcchhHHHHHHHh
Q 040090 25 TGGKSLEAQEHLAEG 39 (112)
Q Consensus 25 tgg~s~~aqEfy~E~ 39 (112)
.||.||+|++|.+=+
T Consensus 254 VGgASL~~~~F~~Ii 268 (272)
T 4g1k_A 254 IGGASLKSGDFLAIC 268 (272)
T ss_dssp ECGGGGSHHHHHHHH
T ss_pred echHhcCHHHHHHHH
Confidence 499999999998754
No 2
>3ta6_A Triosephosphate isomerase; HET: FLC; 1.41A {Mycobacterium tuberculosis} SCOP: c.1.1.0 PDB: 3tao_A* 3gvg_A
Probab=8.57 E-value=1.2e+02 Score=23.71 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=13.0
Q ss_pred CCCcchhHHHHHHHh
Q 040090 25 TGGKSLEAQEHLAEG 39 (112)
Q Consensus 25 tgg~s~~aqEfy~E~ 39 (112)
.||.||+|++|.+=+
T Consensus 238 VGgASL~~~~F~~Ii 252 (267)
T 3ta6_A 238 VGGASLDGEHFATLA 252 (267)
T ss_dssp ECGGGGSHHHHHHHH
T ss_pred echHhcCHHHHHHHH
Confidence 499999999998765
No 3
>3kxq_A Triosephosphate isomerase; ssgcid, NIH, niaid, SBRI, UW, gluconeogenesis, glycolysis, pentose shunt; 1.60A {Bartonella henselae}
Probab=7.68 E-value=1.3e+02 Score=23.75 Aligned_cols=15 Identities=40% Similarity=0.503 Sum_probs=13.0
Q ss_pred CCCcchhHHHHHHHh
Q 040090 25 TGGKSLEAQEHLAEG 39 (112)
Q Consensus 25 tgg~s~~aqEfy~E~ 39 (112)
.||.||+|++|.+=+
T Consensus 255 VGgASL~~~~F~~Ii 269 (275)
T 3kxq_A 255 IGGASLKAIDFLTIC 269 (275)
T ss_dssp ESGGGSSHHHHHHHH
T ss_pred eehhhcCHHHHHHHH
Confidence 499999999998765
No 4
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=7.02 E-value=1.7e+02 Score=23.52 Aligned_cols=29 Identities=28% Similarity=0.572 Sum_probs=21.8
Q ss_pred hhhhHHHHHHHhcCCccccCCCCCcchhHH
Q 040090 4 QQGRKELDTRARQGETVVPGGTGGKSLEAQ 33 (112)
Q Consensus 4 ~~~~~eld~~a~~getvv~ggtgg~s~~aq 33 (112)
++..+-|.++.++|+++|.+|.| .-|.|+
T Consensus 14 ~~il~~l~~~i~~~~~iig~gaG-tGlsAk 42 (286)
T 2p10_A 14 SELVDRFQKKIRAGEPIIGGGAG-TGLSAK 42 (286)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEES-SHHHHH
T ss_pred HHHHHHHHHHHhcCCceEEEecc-cchhhH
Confidence 56667788888899999988764 456665
No 5
>3m9y_A Triosephosphate isomerase; TIM barrel, glycolysis, gluconeogenesis, pentose; HET: CIT; 1.90A {Staphylococcus aureus} SCOP: c.1.1.1 PDB: 3uwv_A* 3uwu_A* 3uww_A* 3uwy_A 3uwz_A*
Probab=7.01 E-value=1.5e+02 Score=23.00 Aligned_cols=15 Identities=27% Similarity=0.423 Sum_probs=12.7
Q ss_pred CCCcchhHHHHHHHh
Q 040090 25 TGGKSLEAQEHLAEG 39 (112)
Q Consensus 25 tgg~s~~aqEfy~E~ 39 (112)
.||.||+|++|.+=+
T Consensus 236 VGgASL~~~~F~~Ii 250 (254)
T 3m9y_A 236 VGGASLKVEDFVQLL 250 (254)
T ss_dssp ESGGGSSHHHHHHHH
T ss_pred eeHHhhCHHHHHHHH
Confidence 599999999998744
No 6
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=6.88 E-value=1.4e+02 Score=22.41 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=18.7
Q ss_pred cccCCCCCcchhHHHHHHHhhhccch
Q 040090 20 VVPGGTGGKSLEAQEHLAEGRSRGGQ 45 (112)
Q Consensus 20 vv~ggtgg~s~~aqEfy~E~G~KGGe 45 (112)
++.|||||-..-|.-.-++.-++|=+
T Consensus 7 i~~GGTgGHi~palala~~L~~~g~~ 32 (365)
T 3s2u_A 7 IMAGGTGGHVFPALACAREFQARGYA 32 (365)
T ss_dssp EECCSSHHHHHHHHHHHHHHHHTTCE
T ss_pred EEcCCCHHHHHHHHHHHHHHHhCCCE
Confidence 45789999988888666666555533
No 7
>1wwz_A Hypothetical protein PH1933; structural genomics, pyrococcus horikoshii OT3, riken struct genomics/proteomics initiative, RSGI; HET: ACO; 1.75A {Pyrococcus horikoshii} SCOP: d.108.1.1
Probab=5.96 E-value=3.1e+02 Score=17.06 Aligned_cols=13 Identities=15% Similarity=-0.031 Sum_probs=7.8
Q ss_pred cchhHHHHHHHhh
Q 040090 28 KSLEAQEHLAEGR 40 (112)
Q Consensus 28 ~s~~aqEfy~E~G 40 (112)
.+..|+.||+..|
T Consensus 128 ~N~~A~~fY~k~G 140 (159)
T 1wwz_A 128 KNYGAMNLYEKFG 140 (159)
T ss_dssp TCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHCC
Confidence 3456666766655
No 8
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Probab=5.91 E-value=4e+02 Score=20.42 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=20.4
Q ss_pred chhhhHHHHHHHhcCC-cc-c-cCCCCCcchhHH
Q 040090 3 SQQGRKELDTRARQGE-TV-V-PGGTGGKSLEAQ 33 (112)
Q Consensus 3 ~~~~~~eld~~a~~ge-tv-v-~ggtgg~s~~aq 33 (112)
.++-++.|++.|++|- ++ + .|-.+| ||+.
T Consensus 97 d~~l~~~L~~aA~~gg~~l~vpSGAi~G--lD~l 128 (253)
T 1j5p_A 97 DEVFRERFFSELKNSPARVFFPSGAIGG--LDVL 128 (253)
T ss_dssp SHHHHHHHHHHHHTCSCEEECCCTTCCC--HHHH
T ss_pred CHHHHHHHHHHHHHCCCeEEecCCcccc--hhHH
Confidence 3556788999999965 44 4 566777 7775
No 9
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=5.86 E-value=2.1e+02 Score=20.14 Aligned_cols=10 Identities=20% Similarity=0.212 Sum_probs=7.5
Q ss_pred hHHHHHHHhh
Q 040090 31 EAQEHLAEGR 40 (112)
Q Consensus 31 ~aqEfy~E~G 40 (112)
-|..||+|+|
T Consensus 302 gA~~y~~e~g 311 (314)
T 1us5_A 302 GAERFYKEAG 311 (314)
T ss_dssp HHHHHHHHTT
T ss_pred hHHHHHHHcC
Confidence 3778888876
No 10
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1
Probab=5.74 E-value=1.9e+02 Score=20.12 Aligned_cols=8 Identities=50% Similarity=0.563 Sum_probs=5.5
Q ss_pred hHHHHHHH
Q 040090 31 EAQEHLAE 38 (112)
Q Consensus 31 ~aqEfy~E 38 (112)
.|++||++
T Consensus 45 ~a~~~Y~~ 52 (136)
T 1k44_A 45 LASQHYAE 52 (136)
T ss_dssp HHHHHTGG
T ss_pred HHHHHHHH
Confidence 46678766
Done!