Query 040090
Match_columns 112
No_of_seqs 124 out of 182
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 07:32:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040090.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040090hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ldda_ a.4.5.34 (A:) Anaphase 10.4 79 0.0057 19.2 2.3 21 4-24 48-69 (74)
2 d2p6ra4 c.37.1.19 (A:203-403) 8.6 1.5E+02 0.011 19.3 3.4 40 4-43 106-169 (201)
3 d2fuea1 c.108.1.10 (A:13-256) 7.5 1.2E+02 0.0091 17.9 2.4 34 3-38 20-53 (244)
4 d2bcgg1 c.3.1.3 (G:5-301) Guan 6.7 61 0.0044 18.7 0.5 31 19-51 9-49 (297)
5 d1aw1a_ c.1.1.1 (A:) Triosepho 6.7 82 0.006 22.2 1.3 15 25-39 233-247 (255)
6 d1m6ja_ c.1.1.1 (A:) Triosepho 6.6 84 0.0061 22.1 1.3 15 25-39 239-253 (260)
7 d1r2ra_ c.1.1.1 (A:) Triosepho 5.8 81 0.0059 22.3 0.8 13 25-38 229-241 (246)
8 d1ufha_ d.108.1.1 (A:) Putativ 5.7 2.5E+02 0.018 15.5 2.9 31 10-40 112-143 (155)
9 d1us5a_ c.94.1.1 (A:) Putative 5.7 99 0.0072 20.8 1.2 10 31-40 286-295 (298)
10 d1trea_ c.1.1.1 (A:) Triosepho 5.6 1E+02 0.0074 21.6 1.3 15 25-39 232-246 (255)
No 1
>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.42 E-value=79 Score=19.22 Aligned_cols=21 Identities=33% Similarity=0.365 Sum_probs=17.0
Q ss_pred hhhhHHHHHHHhcCCc-cccCC
Q 040090 4 QQGRKELDTRARQGET-VVPGG 24 (112)
Q Consensus 4 ~~~~~eld~~a~~get-vv~gg 24 (112)
+|-++=|+..++++.- +|+||
T Consensus 48 ~eL~~FL~~~V~e~kL~~v~gG 69 (74)
T d1ldda_ 48 QQLEGYLNTLADEGRLKYIANG 69 (74)
T ss_dssp HHHHHHHHHHHHTTSEECCTTT
T ss_pred HHHHHHHHHHHhcCceEEecCC
Confidence 5678889999999984 67776
No 2
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=8.57 E-value=1.5e+02 Score=19.28 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=26.7
Q ss_pred hhhhHHHHHHHhcC-------------------CccccCCC-----CCcchhHHHHHHHhhhcc
Q 040090 4 QQGRKELDTRARQG-------------------ETVVPGGT-----GGKSLEAQEHLAEGRSRG 43 (112)
Q Consensus 4 ~~~~~eld~~a~~g-------------------etvv~ggt-----gg~s~~aqEfy~E~G~KG 43 (112)
++.|+.+++..++| .+||--++ ....+...+|++.+||-|
T Consensus 106 ~~~r~~ie~~f~~g~i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAG 169 (201)
T d2p6ra4 106 NGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAG 169 (201)
T ss_dssp HHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBS
T ss_pred hhhHHHHHHHHhCCCceEEEechHHHhhcCCCCceEEEecceeccCCcCCCCHHHHHHHhcccC
Confidence 66788888888888 23333221 344567778999888775
No 3
>d2fuea1 c.108.1.10 (A:13-256) Phosphomannomutase 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.54 E-value=1.2e+02 Score=17.94 Aligned_cols=34 Identities=15% Similarity=0.072 Sum_probs=23.4
Q ss_pred chhhhHHHHHHHhcCCccccCCCCCcchhHHHHHHH
Q 040090 3 SQQGRKELDTRARQGETVVPGGTGGKSLEAQEHLAE 38 (112)
Q Consensus 3 ~~~~~~eld~~a~~getvv~ggtgg~s~~aqEfy~E 38 (112)
|+..++.|.+..+.|-.|| -|||+...+...+.+
T Consensus 20 s~~~~~~i~~l~~~g~~~i--~tgrr~~~~~~~~~~ 53 (244)
T d2fuea1 20 DPEVAAFLQKLRSRVQIGV--VGGSDYCKIAEQLGD 53 (244)
T ss_dssp CHHHHHHHHHHTTTSEEEE--ECSSCHHHHHHHHSS
T ss_pred CHHHHHHHHHHHhCCCEEE--EecCChhhhhhhhhh
Confidence 4567788887766685555 488888887765543
No 4
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.70 E-value=61 Score=18.69 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=17.8
Q ss_pred ccccCCCCCcchhHHHHHHHhhhc----------cchhhhhhh
Q 040090 19 TVVPGGTGGKSLEAQEHLAEGRSR----------GGQTRREQL 51 (112)
Q Consensus 19 tvv~ggtgg~s~~aqEfy~E~G~K----------GGeats~~~ 51 (112)
.||.+|.+|-+ |--.+++.|.+ ||.+++-++
T Consensus 9 iViGaG~~Gl~--~A~~La~~G~~V~vlE~~~~~GG~~~t~~~ 49 (297)
T d2bcgg1 9 IVLGTGITECI--LSGLLSVDGKKVLHIDKQDHYGGEAASVTL 49 (297)
T ss_dssp EEECCSHHHHH--HHHHHHHTTCCEEEECSSSSSCGGGCEECH
T ss_pred EEECcCHHHHH--HHHHHHHCCCCEEEEcCCCCCCcceEEeec
Confidence 46777777744 44456666633 676655433
No 5
>d1aw1a_ c.1.1.1 (A:) Triosephosphate isomerase {Vibrio marinus [TaxId: 90736]}
Probab=6.66 E-value=82 Score=22.15 Aligned_cols=15 Identities=33% Similarity=0.525 Sum_probs=12.2
Q ss_pred CCCcchhHHHHHHHh
Q 040090 25 TGGKSLEAQEHLAEG 39 (112)
Q Consensus 25 tgg~s~~aqEfy~E~ 39 (112)
.||.||++++|..=+
T Consensus 233 VG~ASl~~~~F~~Ii 247 (255)
T d1aw1a_ 233 VGGAALDAKSFAAIA 247 (255)
T ss_dssp ESGGGGSHHHHHHHH
T ss_pred echHhcCHHHHHHHH
Confidence 489999999998643
No 6
>d1m6ja_ c.1.1.1 (A:) Triosephosphate isomerase {Entamoeba histolytica [TaxId: 5759]}
Probab=6.57 E-value=84 Score=22.12 Aligned_cols=15 Identities=33% Similarity=0.364 Sum_probs=12.4
Q ss_pred CCCcchhHHHHHHHh
Q 040090 25 TGGKSLEAQEHLAEG 39 (112)
Q Consensus 25 tgg~s~~aqEfy~E~ 39 (112)
.||.||++++|..=+
T Consensus 239 VGgASL~~~~F~~Ii 253 (260)
T d1m6ja_ 239 VGGASLDAAKFKTII 253 (260)
T ss_dssp ESGGGGSHHHHHHHH
T ss_pred echHhcCHHHHHHHH
Confidence 489999999997644
No 7
>d1r2ra_ c.1.1.1 (A:) Triosephosphate isomerase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=5.81 E-value=81 Score=22.29 Aligned_cols=13 Identities=31% Similarity=0.537 Sum_probs=10.2
Q ss_pred CCCcchhHHHHHHH
Q 040090 25 TGGKSLEAQEHLAE 38 (112)
Q Consensus 25 tgg~s~~aqEfy~E 38 (112)
.||.||+++ |++=
T Consensus 229 VGgASL~~e-F~~I 241 (246)
T d1r2ra_ 229 VGGASLKPE-FVDI 241 (246)
T ss_dssp ESGGGGSTH-HHHH
T ss_pred eehhhCCHH-HHHH
Confidence 599999985 8753
No 8
>d1ufha_ d.108.1.1 (A:) Putative acetyltransferase YycN {Bacillus subtilis [TaxId: 1423]}
Probab=5.69 E-value=2.5e+02 Score=15.47 Aligned_cols=31 Identities=19% Similarity=0.128 Sum_probs=16.1
Q ss_pred HHHHHhc-CCccccCCCCCcchhHHHHHHHhh
Q 040090 10 LDTRARQ-GETVVPGGTGGKSLEAQEHLAEGR 40 (112)
Q Consensus 10 ld~~a~~-getvv~ggtgg~s~~aqEfy~E~G 40 (112)
|...|++ |=..+--.|--.+..|+.||+..|
T Consensus 112 ~~~~~~~~g~~~i~l~v~~~N~~a~~~y~k~G 143 (155)
T d1ufha_ 112 LDQAARSMGIRKLSLHVFAHNQTARKLYEQTG 143 (155)
T ss_dssp HHHHHHHTTCCEEEECCCTTCHHHHHHHHHTT
T ss_pred HHHHhhhcCCceeEEEEcCCCHHHHHHHHHCC
Confidence 3334444 433333344445666777777765
No 9
>d1us5a_ c.94.1.1 (A:) Putative GluR0 ligand binding core {Thermus thermophilus [TaxId: 274]}
Probab=5.68 E-value=99 Score=20.80 Aligned_cols=10 Identities=20% Similarity=0.212 Sum_probs=7.3
Q ss_pred hHHHHHHHhh
Q 040090 31 EAQEHLAEGR 40 (112)
Q Consensus 31 ~aqEfy~E~G 40 (112)
-|..||+|+|
T Consensus 286 GA~~yy~E~G 295 (298)
T d1us5a_ 286 GAERFYKEAG 295 (298)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 4678888776
No 10
>d1trea_ c.1.1.1 (A:) Triosephosphate isomerase {Escherichia coli [TaxId: 562]}
Probab=5.58 E-value=1e+02 Score=21.62 Aligned_cols=15 Identities=33% Similarity=0.364 Sum_probs=12.3
Q ss_pred CCCcchhHHHHHHHh
Q 040090 25 TGGKSLEAQEHLAEG 39 (112)
Q Consensus 25 tgg~s~~aqEfy~E~ 39 (112)
.||.||++++|..=+
T Consensus 232 VGgASl~~~~F~~Ii 246 (255)
T d1trea_ 232 VGGASLKADAFAVIV 246 (255)
T ss_dssp ESGGGGCHHHHHHHH
T ss_pred echhhcCHHHHHHHH
Confidence 489999999987644
Done!