BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040093
         (48 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2NUW|A Chain A, 2-Keto-3-Deoxygluconate Aldolase From Sulfolobus
           Acidocaldarius, Native Structure At 1.8 A Resolution
 pdb|2NUW|B Chain B, 2-Keto-3-Deoxygluconate Aldolase From Sulfolobus
           Acidocaldarius, Native Structure At 1.8 A Resolution
 pdb|2NUX|A Chain A, 2-Keto-3-Deoxygluconate Aldolase From Sulfolobus
           Acidocaldarius, Native Structure In P6522 At 2.5 A
           Resolution
 pdb|2NUX|B Chain B, 2-Keto-3-Deoxygluconate Aldolase From Sulfolobus
           Acidocaldarius, Native Structure In P6522 At 2.5 A
           Resolution
 pdb|2NUY|A Chain A, 2-Keto-3-Deoxygluconate Aldolase From Sulfolobus
           Acidocaldarius In Complex With Pyruvate
 pdb|2NUY|B Chain B, 2-Keto-3-Deoxygluconate Aldolase From Sulfolobus
           Acidocaldarius In Complex With Pyruvate
          Length = 288

 Score = 26.2 bits (56), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 15  AAISAAMLCFYSYVVASGGNPPPKKLKS 42
           A IS+  L  Y+Y  A+G + PP  LKS
Sbjct: 119 ARISSHSLYIYNYPAATGYDIPPSILKS 146


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.128    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,435,921
Number of Sequences: 62578
Number of extensions: 33210
Number of successful extensions: 59
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57
Number of HSP's gapped (non-prelim): 2
length of query: 48
length of database: 14,973,337
effective HSP length: 21
effective length of query: 27
effective length of database: 13,659,199
effective search space: 368798373
effective search space used: 368798373
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)