Query 040093
Match_columns 48
No_of_seqs 54 out of 56
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 07:35:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040093.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040093hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2loo_A Transmembrane protein 1 98.4 3E-10 1E-14 69.4 0.0 29 2-30 80-108 (108)
2 2los_A Transmembrane protein 1 98.3 4.7E-10 1.6E-14 69.9 0.0 31 2-32 89-119 (121)
3 2lx0_A Membrane fusion protein 73.7 5.1 0.00017 19.9 3.3 22 10-31 9-30 (32)
4 3a1y_A 50S ribosomal protein P 31.4 22 0.00076 18.7 1.4 16 21-36 1-17 (58)
5 1v54_D Cytochrome C oxidase su 20.5 1.5E+02 0.0052 18.4 4.0 27 11-38 83-109 (147)
6 3m73_A Tellurite resistance pr 17.7 1E+02 0.0035 20.0 2.8 29 12-42 171-199 (314)
7 4b19_A PEPA1; toxin, toxin apo 16.5 94 0.0032 15.0 1.9 17 15-31 10-26 (30)
8 2lbf_B 60S acidic ribosomal pr 16.2 23 0.00078 19.5 -0.5 14 21-34 2-16 (70)
9 2y69_D Cytochrome C oxidase su 15.2 2.3E+02 0.0079 18.0 4.0 27 11-38 105-131 (169)
10 1rdt_E LXXLL motif coactivator 15.2 57 0.002 15.4 0.8 9 28-36 15-23 (26)
No 1
>2loo_A Transmembrane protein 14A; helical bundle; NMR {Homo sapiens} PDB: 2lop_A
Probab=98.36 E-value=3e-10 Score=69.44 Aligned_cols=29 Identities=24% Similarity=0.478 Sum_probs=27.5
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHh
Q 040093 2 WMQTKKLFPTGFYAAISAAMLCFYSYVVA 30 (48)
Q Consensus 2 y~~T~kifPaG~va~iS~~M~~FY~y~l~ 30 (48)
|.+|+|+||+|+++++|++|+|||+|+++
T Consensus 80 ~~~t~K~mPaGl~a~lS~~m~~~y~~~l~ 108 (108)
T 2loo_A 80 FKRSKKIMPAGLVAGLSLMMILRLVLLLL 108 (108)
Confidence 67899999999999999999999999985
No 2
>2los_A Transmembrane protein 14C; paramagnetic relaxation enhancement, helic; NMR {Homo sapiens}
Probab=98.31 E-value=4.7e-10 Score=69.92 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=29.2
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHhcC
Q 040093 2 WMQTKKLFPTGFYAAISAAMLCFYSYVVASG 32 (48)
Q Consensus 2 y~~T~kifPaG~va~iS~~M~~FY~y~l~~g 32 (48)
|.+|+|+||+|+++++|++|+|||.|++++.
T Consensus 89 ~~~t~K~mPaGlva~lS~~m~~~~~~~ll~~ 119 (121)
T 2los_A 89 FYHSGKFMPAGLIAGASLLMVAKVGVSMFNR 119 (121)
Confidence 6789999999999999999999999999973
No 3
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=73.68 E-value=5.1 Score=19.88 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhc
Q 040093 10 PTGFYAAISAAMLCFYSYVVAS 31 (48)
Q Consensus 10 PaG~va~iS~~M~~FY~y~l~~ 31 (48)
=+|+++++..+..+|++++.+.
T Consensus 9 iaglvalltflafgfwlfkylq 30 (32)
T 2lx0_A 9 IAGLVALLTFLAFGFWLFKYLQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4799999999999999988763
No 4
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=31.35 E-value=22 Score=18.71 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=11.4
Q ss_pred HHHHHHHHHh-cCCCCC
Q 040093 21 MLCFYSYVVA-SGGNPP 36 (48)
Q Consensus 21 M~~FY~y~l~-~ggNp~ 36 (48)
|-|-|++-|+ .+|+.|
T Consensus 1 m~~~yAallL~~~g~~~ 17 (58)
T 3a1y_A 1 MEYVYAALLLHSVGKEI 17 (58)
T ss_dssp CHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHhCCCCC
Confidence 6788998888 455533
No 5
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=20.48 E-value=1.5e+02 Score=18.42 Aligned_cols=27 Identities=19% Similarity=0.015 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 040093 11 TGFYAAISAAMLCFYSYVVASGGNPPPK 38 (48)
Q Consensus 11 aG~va~iS~~M~~FY~y~l~~ggNp~pk 38 (48)
.|++.++++..++|+..++...+ |+|+
T Consensus 83 g~v~~~i~~s~~~f~~~r~~v~~-p~P~ 109 (147)
T 1v54_D 83 GAAMFFIGFTALLLIWEKHYVYG-PIPH 109 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCC-CCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHccC-CCCC
Confidence 56777788888888887777544 3443
No 6
>3m73_A Tellurite resistance protein TEHA homolog; anion channel, alpha helical integral membrane protein, STRU genomics, PSI-2; HET: BOG; 1.15A {Haemophilus influenzae} PDB: 3m75_A* 3m74_A* 3m77_A* 3m71_A* 3m7b_A* 3m7c_A* 3m7e_A* 3m7l_A* 3m78_A* 3m76_A* 3m72_A*
Probab=17.66 E-value=1e+02 Score=20.02 Aligned_cols=29 Identities=3% Similarity=-0.139 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCccccc
Q 040093 12 GFYAAISAAMLCFYSYVVASGGNPPPKKLKS 42 (48)
Q Consensus 12 G~va~iS~~M~~FY~y~l~~ggNp~pkk~~~ 42 (48)
|+=..++..|...|.|++.. +++|++..+
T Consensus 171 ~~G~~~~l~l~~i~~~Rl~~--~~lp~~~~P 199 (314)
T 3m73_A 171 GAGMIAWIIFEPVLLQHLRI--SSLEPQFRA 199 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--TCCCHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHcc--cCCChhhhh
Confidence 44456777888999999998 455666554
No 7
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=16.51 E-value=94 Score=15.00 Aligned_cols=17 Identities=29% Similarity=0.636 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHhc
Q 040093 15 AAISAAMLCFYSYVVAS 31 (48)
Q Consensus 15 a~iS~~M~~FY~y~l~~ 31 (48)
-++|+++..+|.|-|-.
T Consensus 10 ~visGcivalF~hWL~~ 26 (30)
T 4b19_A 10 PVISGCAIAFFSYWLSR 26 (30)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 36899999999987753
No 8
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=16.21 E-value=23 Score=19.54 Aligned_cols=14 Identities=50% Similarity=0.724 Sum_probs=11.1
Q ss_pred HHHHHHHHHh-cCCC
Q 040093 21 MLCFYSYVVA-SGGN 34 (48)
Q Consensus 21 M~~FY~y~l~-~ggN 34 (48)
|=+-|+|-|+ .|||
T Consensus 2 M~yvyA~Lll~~~g~ 16 (70)
T 2lbf_B 2 MRYVASYLLAALGGN 16 (70)
T ss_dssp CCTHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHhCCC
Confidence 5578999999 6677
No 9
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=15.23 E-value=2.3e+02 Score=18.02 Aligned_cols=27 Identities=19% Similarity=0.015 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 040093 11 TGFYAAISAAMLCFYSYVVASGGNPPPK 38 (48)
Q Consensus 11 aG~va~iS~~M~~FY~y~l~~ggNp~pk 38 (48)
.|++.++++..++|+..+....+ |+|+
T Consensus 105 ggv~~~i~~s~~~f~~~r~~v~~-p~P~ 131 (169)
T 2y69_D 105 GAAMFFIGFTALLLIWEKHYVYG-PIPH 131 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCC-CCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHccC-CCCC
Confidence 56777788888888887777544 3443
No 10
>1rdt_E LXXLL motif coactivator, peroxisome proliferator activated receptor gamma; hormone, polymorphism, hormone/growth factor complex; HET: L79 570; 2.40A {Homo sapiens}
Probab=15.20 E-value=57 Score=15.41 Aligned_cols=9 Identities=22% Similarity=0.423 Sum_probs=6.9
Q ss_pred HHhcCCCCC
Q 040093 28 VVASGGNPP 36 (48)
Q Consensus 28 ~l~~ggNp~ 36 (48)
-++++|+|+
T Consensus 15 eLLR~g~~~ 23 (26)
T 1rdt_E 15 ELLRGGSGS 23 (26)
T ss_pred HHHcCCCCc
Confidence 477899875
Done!