Query 040093
Match_columns 48
No_of_seqs 54 out of 56
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 07:35:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040093.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040093hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axth1 f.23.33.1 (H:2-65) Pho 22.2 40 0.0029 17.5 2.8 26 4-29 16-42 (64)
2 d1xmec1 f.23.9.1 (C:2-34) Bact 17.2 53 0.0039 15.0 3.2 18 12-29 9-26 (33)
3 d1iq3a_ a.39.1.6 (A:) Pob1 {Hu 13.9 64 0.0047 16.6 2.4 23 22-44 80-102 (110)
4 d1x63a2 g.39.1.3 (A:45-76) Fou 12.2 18 0.0013 16.6 -0.3 9 4-12 10-18 (32)
5 d1mxsa_ c.1.10.1 (A:) KDPG ald 12.1 38 0.0028 20.3 1.2 13 6-18 134-146 (216)
6 d1v54d_ f.23.1.1 (D:) Mitochon 11.4 1.4E+02 0.01 17.0 4.0 23 11-33 80-102 (144)
7 d1ppjd2 f.23.11.1 (D:196-241) 11.3 68 0.0049 15.2 1.8 23 6-28 6-28 (46)
8 d1kqfb2 f.23.22.1 (B:246-290) 10.4 1E+02 0.0075 14.7 3.1 26 10-36 14-39 (45)
9 d1r0pa_ d.144.1.7 (A:) Hepatoc 9.4 1.2E+02 0.0089 17.6 2.8 21 16-39 217-237 (311)
10 d3lada1 c.3.1.5 (A:1-158,A:278 8.1 93 0.0068 16.0 1.7 8 10-17 13-20 (229)
No 1
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=22.19 E-value=40 Score=17.53 Aligned_cols=26 Identities=19% Similarity=0.278 Sum_probs=18.9
Q ss_pred cccccch-hHHHHHHHHHHHHHHHHHH
Q 040093 4 QTKKLFP-TGFYAAISAAMLCFYSYVV 29 (48)
Q Consensus 4 ~T~kifP-aG~va~iS~~M~~FY~y~l 29 (48)
+-+|+-| ||..-+...+|.+|-++.+
T Consensus 16 eyGKVaPGWGTTplMgv~m~Lf~vfl~ 42 (64)
T d2axth1 16 EYGKVAPGWGTTPLMAVFMGLFLVFLL 42 (64)
T ss_dssp CSSCCCSTTTTHHHHHHHHHHHHHHHH
T ss_pred ccCcccCCcCccHHHHHHHHHHHHHHH
Confidence 3467777 6777788888888877654
No 2
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=17.19 E-value=53 Score=14.98 Aligned_cols=18 Identities=17% Similarity=0.303 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 040093 12 GFYAAISAAMLCFYSYVV 29 (48)
Q Consensus 12 G~va~iS~~M~~FY~y~l 29 (48)
|+++++....+.|+.=++
T Consensus 9 ~vi~il~l~ilvfw~gv~ 26 (33)
T d1xmec1 9 AVILVLTLTILVFWLGVY 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566777777777775443
No 3
>d1iq3a_ a.39.1.6 (A:) Pob1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.88 E-value=64 Score=16.64 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=16.0
Q ss_pred HHHHHHHHhcCCCCCCccccccc
Q 040093 22 LCFYSYVVASGGNPPPKKLKSSA 44 (48)
Q Consensus 22 ~~FY~y~l~~ggNp~pkk~~~~~ 44 (48)
.++|+=.....|+++|..+.++.
T Consensus 80 ~am~Li~~~~~G~~lP~~LP~~l 102 (110)
T d1iq3a_ 80 AAFHLIVARKNGYPLPEGLPPTL 102 (110)
T ss_dssp HHHHHHHHHHHTCCCCCCSSCCS
T ss_pred HHHHHHHHHHcCCCCCcccCccc
Confidence 45666666677888888886543
No 4
>d1x63a2 g.39.1.3 (A:45-76) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.18 E-value=18 Score=16.61 Aligned_cols=9 Identities=44% Similarity=0.881 Sum_probs=6.7
Q ss_pred cccccchhH
Q 040093 4 QTKKLFPTG 12 (48)
Q Consensus 4 ~T~kifPaG 12 (48)
-++.|||-|
T Consensus 10 gsgsffpkg 18 (32)
T d1x63a2 10 GTGSFFPKG 18 (32)
T ss_dssp TTSCEEEET
T ss_pred ccccccCCC
Confidence 367888876
No 5
>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}
Probab=12.13 E-value=38 Score=20.32 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=9.2
Q ss_pred cccchhHHHHHHH
Q 040093 6 KKLFPTGFYAAIS 18 (48)
Q Consensus 6 ~kifPaG~va~iS 18 (48)
=|+||++.+...+
T Consensus 134 vKlFPA~~~~g~~ 146 (216)
T d1mxsa_ 134 FKLFPAEISGGVA 146 (216)
T ss_dssp EEETTHHHHTHHH
T ss_pred EEeccccccccHH
Confidence 4899998764444
No 6
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.37 E-value=1.4e+02 Score=16.97 Aligned_cols=23 Identities=13% Similarity=-0.174 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCC
Q 040093 11 TGFYAAISAAMLCFYSYVVASGG 33 (48)
Q Consensus 11 aG~va~iS~~M~~FY~y~l~~gg 33 (48)
.|++..+|+..++|...+...-+
T Consensus 80 g~~~~~i~~s~~i~~~~r~~v~p 102 (144)
T d1v54d_ 80 GAAMFFIGFTALLLIWEKHYVYG 102 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC
Confidence 56667788888888877776543
No 7
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.32 E-value=68 Score=15.18 Aligned_cols=23 Identities=9% Similarity=0.112 Sum_probs=13.7
Q ss_pred cccchhHHHHHHHHHHHHHHHHH
Q 040093 6 KKLFPTGFYAAISAAMLCFYSYV 28 (48)
Q Consensus 6 ~kifPaG~va~iS~~M~~FY~y~ 28 (48)
+|-|=--++.++|.+..++|.++
T Consensus 6 RK~mG~Kv~~~l~~l~~l~yy~K 28 (46)
T d1ppjd2 6 RKRMGLKMLLMMGLLLPLVYAMK 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445667777777776553
No 8
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=10.39 E-value=1e+02 Score=14.66 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 040093 10 PTGFYAAISAAMLCFYSYVVASGGNPP 36 (48)
Q Consensus 10 PaG~va~iS~~M~~FY~y~l~~ggNp~ 36 (48)
|-|.++...++...|+=| +--|.|..
T Consensus 14 pl~~~~~~~~~~~~~fHY-v~vGPn~v 39 (45)
T d1kqfb2 14 PLAAAGFIATFAGLIFHY-IGIGPNKE 39 (45)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCBCS
T ss_pred HHHHHHHHHHHHHHHHhh-heeCCCcc
Confidence 778888877777776644 55687743
No 9
>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.36 E-value=1.2e+02 Score=17.57 Aligned_cols=21 Identities=24% Similarity=0.388 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcc
Q 040093 16 AISAAMLCFYSYVVASGGNPPPKK 39 (48)
Q Consensus 16 ~iS~~M~~FY~y~l~~ggNp~pkk 39 (48)
+-|.+|+++ -|++|++|+...
T Consensus 217 I~SfGivl~---El~t~~~p~~~~ 237 (311)
T d1r0pa_ 217 VWSFGVLLW---ELMTRGAPPYPD 237 (311)
T ss_dssp HHHHHHHHH---HHHTTSCCSCC-
T ss_pred hhhhHHHHH---HHHHCCCCCCCC
Confidence 556666654 467888887654
No 10
>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}
Probab=8.10 E-value=93 Score=16.04 Aligned_cols=8 Identities=63% Similarity=1.078 Sum_probs=4.6
Q ss_pred hhHHHHHH
Q 040093 10 PTGFYAAI 17 (48)
Q Consensus 10 PaG~va~i 17 (48)
|||+.|.+
T Consensus 13 pAGl~aA~ 20 (229)
T d3lada1 13 PGGYVAAI 20 (229)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56665544
Done!