Query 040096
Match_columns 212
No_of_seqs 201 out of 1593
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 07:37:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040096.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040096hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 4.9E-40 1.7E-44 230.4 4.3 73 2-76 1-73 (77)
2 3p57_A Myocyte-specific enhanc 100.0 2.3E-39 8E-44 232.4 4.3 73 2-76 1-73 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 7.7E-38 2.6E-42 228.2 3.9 71 1-73 16-86 (100)
4 1hbx_A SRF, serum response fac 100.0 1.4E-37 4.7E-42 224.1 2.6 70 1-72 10-79 (92)
5 1k6o_B SRF, serum response fac 100.0 5.7E-37 1.9E-41 225.0 2.8 69 1-71 9-77 (103)
6 1dh3_A Transcription factor CR 85.6 3.2 0.00011 26.2 6.3 37 131-167 12-48 (55)
7 2wt7_A Proto-oncogene protein 83.7 5.1 0.00018 25.8 6.8 38 131-168 13-50 (63)
8 2dgc_A Protein (GCN4); basic d 82.9 3.9 0.00013 26.5 5.9 38 130-167 19-56 (63)
9 1t2k_D Cyclic-AMP-dependent tr 82.6 6.1 0.00021 25.2 6.8 38 131-168 12-49 (61)
10 1jnm_A Proto-oncogene C-JUN; B 82.0 6.6 0.00023 25.1 6.8 39 130-168 11-49 (62)
11 3nmd_A CGMP dependent protein 81.3 9.8 0.00033 25.4 7.6 52 112-166 14-65 (72)
12 1ci6_A Transcription factor AT 78.6 9.9 0.00034 24.5 6.8 39 130-168 12-50 (63)
13 1j1d_C Troponin I, TNI; THIN f 72.3 23 0.00079 26.4 8.2 39 111-149 53-91 (133)
14 1ytz_T Troponin T; muscle, THI 71.8 17 0.00057 26.1 7.1 41 111-151 37-77 (107)
15 1j1d_B Troponin T, TNT; THIN f 70.6 14 0.00049 26.5 6.5 41 112-152 38-78 (106)
16 2rpa_A Katanin P60 ATPase-cont 59.6 1.4 4.8E-05 30.0 -0.7 35 29-76 16-50 (78)
17 2oa5_A Hypothetical protein BQ 59.0 30 0.001 24.9 6.2 59 82-140 8-68 (110)
18 1a93_B MAX protein, coiled coi 58.1 6.4 0.00022 22.4 2.0 23 86-108 11-33 (34)
19 1hjb_A Ccaat/enhancer binding 58.0 43 0.0015 23.0 6.8 39 130-168 25-63 (87)
20 1gu4_A CAAT/enhancer binding p 56.2 43 0.0015 22.5 6.8 39 130-168 25-63 (78)
21 1j1e_C Troponin I, TNI; THIN f 56.1 42 0.0014 26.3 7.2 38 112-149 54-91 (180)
22 1z56_A Ligase interacting fact 53.9 17 0.0006 29.7 4.8 48 9-56 117-164 (246)
23 2l16_A SEC-independent protein 53.6 0.49 1.7E-05 32.3 -3.8 30 43-76 16-45 (78)
24 3oja_A Leucine-rich immune mol 51.6 72 0.0025 28.0 9.1 49 120-168 414-462 (487)
25 2dfs_A Myosin-5A; myosin-V, in 51.1 66 0.0023 32.0 9.4 25 144-168 1019-1043(1080)
26 3nrf_A APAG protein; structura 50.6 1.3 4.4E-05 31.9 -2.2 50 11-69 21-70 (106)
27 3thf_A Protein shroom; coiled- 49.6 31 0.0011 27.2 5.5 37 132-168 10-46 (190)
28 2w6a_A ARF GTPase-activating p 46.8 54 0.0018 20.9 5.6 44 114-161 8-61 (63)
29 1deq_A Fibrinogen (alpha chain 46.3 1E+02 0.0035 27.0 8.7 43 25-72 20-62 (390)
30 1gd2_E Transcription factor PA 45.7 61 0.0021 21.2 6.1 33 129-161 17-49 (70)
31 1g6u_A Domain swapped dimer; d 45.4 45 0.0015 19.5 4.6 21 115-135 16-36 (48)
32 2oqq_A Transcription factor HY 45.4 46 0.0016 19.7 5.8 22 143-164 19-40 (42)
33 2l5g_B Putative uncharacterize 44.7 47 0.0016 19.6 5.0 38 115-156 1-38 (42)
34 3s9g_A Protein hexim1; cyclin 39.4 73 0.0025 22.4 5.5 19 144-162 68-86 (104)
35 3hnw_A Uncharacterized protein 39.3 1.1E+02 0.0039 22.5 8.6 24 144-167 106-129 (138)
36 3ol1_A Vimentin; structural ge 37.3 66 0.0023 23.1 5.3 42 124-165 63-107 (119)
37 1ytz_I Troponin I; muscle, THI 32.3 1.5E+02 0.0053 23.1 7.0 38 111-149 51-88 (182)
38 1m2d_A [2Fe-2S] ferredoxin; th 32.0 24 0.00082 24.8 2.1 33 39-73 59-91 (110)
39 2aze_A Transcription factor DP 31.6 1.7E+02 0.0058 22.2 7.4 44 117-160 3-48 (155)
40 2qez_A Ethanolamine ammonia-ly 31.4 14 0.00047 32.8 0.9 12 196-207 157-168 (455)
41 2jee_A YIIU; FTSZ, septum, coi 30.3 1.3E+02 0.0044 20.4 8.6 43 116-159 3-45 (81)
42 3abq_A Ethanolamine ammonia-ly 30.2 14 0.00048 32.8 0.7 12 196-207 156-167 (453)
43 1go4_E MAD1 (mitotic arrest de 27.7 1.1E+02 0.0037 21.6 4.9 28 143-170 14-41 (100)
44 1m1j_C Fibrinogen gamma chain; 26.9 3E+02 0.01 24.1 8.7 56 50-107 11-66 (409)
45 3a7p_A Autophagy protein 16; c 23.5 2.4E+02 0.0082 21.3 8.5 22 144-165 113-134 (152)
46 1dip_A Delta-sleep-inducing pe 23.2 40 0.0014 22.5 1.8 18 144-161 18-35 (78)
47 3nzj_F Proteasome component C1 22.6 15 0.00051 30.8 -0.5 20 37-56 4-23 (288)
48 3hnw_A Uncharacterized protein 22.1 2.4E+02 0.0082 20.7 9.4 66 89-164 68-133 (138)
49 3na7_A HP0958; flagellar bioge 21.3 3.2E+02 0.011 21.8 7.9 21 85-105 93-113 (256)
50 3h4p_A Proteasome subunit alph 20.9 21 0.00071 29.3 0.0 17 40-56 11-27 (264)
51 1a0r_P Phosducin, MEKA, PP33; 20.8 78 0.0027 25.5 3.5 33 111-143 67-101 (245)
52 3hvz_A Uncharacterized protein 20.7 63 0.0021 21.4 2.4 25 45-70 8-32 (78)
53 3oja_B Anopheles plasmodium-re 20.4 4.5E+02 0.015 23.2 9.3 17 150-166 539-555 (597)
54 1deb_A APC protein, adenomatou 20.1 1.6E+02 0.0053 18.1 3.9 23 145-167 7-29 (54)
55 2jo8_A Serine/threonine-protei 20.0 1E+02 0.0035 19.0 3.1 14 112-125 6-19 (51)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=4.9e-40 Score=230.37 Aligned_cols=73 Identities=45% Similarity=0.782 Sum_probs=69.3
Q ss_pred CcccceeEEeCCCccchhhhhhhhchHHHhHHhhhhhcCcceeeEeecCCCCcccccCCCcchhHHHHhhhhhcC
Q 040096 2 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSG 76 (212)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvtfsKRr~GL~KKA~ELsvLCda~valivfS~~gk~~~~~s~~~~~~~ileRY~~~~~ 76 (212)
||+||+|++|||.++|||||+|||+||||||+|||||||||||||||||+||+|+|+|++ |++||+||+..++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~--~~~il~ry~~~~~ 73 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVLLKYTEYNE 73 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSC--HHHHHHHHHHC--
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCC--HHHHHHHHHhccC
Confidence 899999999999999999999999999999999999999999999999999999999865 9999999998754
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=2.3e-39 Score=232.40 Aligned_cols=73 Identities=45% Similarity=0.782 Sum_probs=70.6
Q ss_pred CcccceeEEeCCCccchhhhhhhhchHHHhHHhhhhhcCcceeeEeecCCCCcccccCCCcchhHHHHhhhhhcC
Q 040096 2 GRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSG 76 (212)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvtfsKRr~GL~KKA~ELsvLCda~valivfS~~gk~~~~~s~~~~~~~ileRY~~~~~ 76 (212)
||+||+|++|||.++|||||||||+||||||+||||||||+||||||||+||+|+|+||+ |+.||+||+..+.
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~--~~~il~rY~~~~~ 73 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVLLKYTEYNE 73 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSC--HHHHHHHHHHCCS
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCC--HHHHHHHHHhcCc
Confidence 899999999999999999999999999999999999999999999999999999999965 9999999999765
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=7.7e-38 Score=228.21 Aligned_cols=71 Identities=41% Similarity=0.623 Sum_probs=68.7
Q ss_pred CCcccceeEEeCCCccchhhhhhhhchHHHhHHhhhhhcCcceeeEeecCCCCcccccCCCcchhHHHHhhhh
Q 040096 1 MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHR 73 (212)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvtfsKRr~GL~KKA~ELsvLCda~valivfS~~gk~~~~~s~~~~~~~ileRY~~ 73 (212)
|||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+||+|+|+||+ +..||++|..
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps--~~~il~r~~G 86 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK--FEPIVTQQEG 86 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTT--TTHHHHSHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCC--HHHHHHHhhC
Confidence 8999999999999999999999999999999999999999999999999999999999986 9999998854
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=1.4e-37 Score=224.07 Aligned_cols=70 Identities=31% Similarity=0.525 Sum_probs=67.8
Q ss_pred CCcccceeEEeCCCccchhhhhhhhchHHHhHHhhhhhcCcceeeEeecCCCCcccccCCCcchhHHHHhhh
Q 040096 1 MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYH 72 (212)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvtfsKRr~GL~KKA~ELsvLCda~valivfS~~gk~~~~~s~~~~~~~ileRY~ 72 (212)
|||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+||+ |..||++|.
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~--~~~~i~~~~ 79 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK--LQPMITSET 79 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGG--GGGGTSSHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCC--HHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999976 999999764
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=5.7e-37 Score=224.97 Aligned_cols=69 Identities=32% Similarity=0.534 Sum_probs=67.1
Q ss_pred CCcccceeEEeCCCccchhhhhhhhchHHHhHHhhhhhcCcceeeEeecCCCCcccccCCCcchhHHHHhh
Q 040096 1 MGRGKIEIKRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQY 71 (212)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvtfsKRr~GL~KKA~ELsvLCda~valivfS~~gk~~~~~s~~~~~~~ileRY 71 (212)
|||+||+|++|||.++|+|||+|||+||||||+||||||||+||||||||+|++|+|+||+ |..||+++
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~--~~~vi~~~ 77 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK--LQPMITSE 77 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGG--GGGGTSSH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCcc--HHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999976 99999974
No 6
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=85.60 E-value=3.2 Score=26.16 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 040096 131 GLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQ 167 (212)
Q Consensus 131 ~L~~VR~rK~~ll~~l~kk~~~l~een~~L~~~~~~~ 167 (212)
+-..-|.||...++.|..++..|+.+|..|...+...
T Consensus 12 sA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L 48 (55)
T 1dh3_A 12 AARESRRKKKEYVKSLENRVAVLENQNKTLIEELKAL 48 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445688888889999999999999999999887653
No 7
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=83.68 E-value=5.1 Score=25.80 Aligned_cols=38 Identities=16% Similarity=0.269 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 040096 131 GLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQE 168 (212)
Q Consensus 131 ~L~~VR~rK~~ll~~l~kk~~~l~een~~L~~~~~~~~ 168 (212)
+-.+.|.||.+.+..|..++..|+.+|..|...+....
T Consensus 13 AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~ 50 (63)
T 2wt7_A 13 AAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLL 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667899999999999999999999999999886643
No 8
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=82.91 E-value=3.9 Score=26.51 Aligned_cols=38 Identities=8% Similarity=0.119 Sum_probs=32.7
Q ss_pred HhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 040096 130 NGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQ 167 (212)
Q Consensus 130 ~~L~~VR~rK~~ll~~l~kk~~~l~een~~L~~~~~~~ 167 (212)
.+-.+.|.||.+-+..|..++..|..+|..|...+...
T Consensus 19 eAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 19 EAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999877653
No 9
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=82.63 E-value=6.1 Score=25.18 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 040096 131 GLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQE 168 (212)
Q Consensus 131 ~L~~VR~rK~~ll~~l~kk~~~l~een~~L~~~~~~~~ 168 (212)
+-.+.|.||.+.+..|..++..|+.+|..|...+....
T Consensus 12 AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~ 49 (61)
T 1t2k_D 12 AASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLR 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567899999999999999999999999999886644
No 10
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=81.97 E-value=6.6 Score=25.12 Aligned_cols=39 Identities=10% Similarity=0.147 Sum_probs=33.3
Q ss_pred HhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 040096 130 NGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQE 168 (212)
Q Consensus 130 ~~L~~VR~rK~~ll~~l~kk~~~l~een~~L~~~~~~~~ 168 (212)
.+-.+-|.||.+.+..|..++..|..+|..|...+....
T Consensus 11 ~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~ 49 (62)
T 1jnm_A 11 IAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLR 49 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677899999999999999999999999999886643
No 11
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=81.27 E-value=9.8 Score=25.40 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=38.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 040096 112 DISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQ 166 (212)
Q Consensus 112 dL~~Ls~~eL~~LE~~Le~~L~~VR~rK~~ll~~l~kk~~~l~een~~L~~~~~~ 166 (212)
.+++++. +.+|+..|......||.+ ..+|+.+.+.....+++...|+..+..
T Consensus 14 ~~~~mgt--i~eLq~~L~~K~eELr~k-d~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 14 SIEGRGS--LRDLQYALQEKIEELRQR-DALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp -----CH--HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCCc--HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 888899999999999877 566888888888888888888877654
No 12
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=78.63 E-value=9.9 Score=24.46 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=32.7
Q ss_pred HhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 040096 130 NGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQE 168 (212)
Q Consensus 130 ~~L~~VR~rK~~ll~~l~kk~~~l~een~~L~~~~~~~~ 168 (212)
.+-.+-|.+|.+-+..|..+...|..+|..|...+....
T Consensus 12 ~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~ 50 (63)
T 1ci6_A 12 TAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLA 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677888888889999999999999999999887654
No 13
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=72.26 E-value=23 Score=26.40 Aligned_cols=39 Identities=18% Similarity=0.248 Sum_probs=33.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 040096 111 EDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKN 149 (212)
Q Consensus 111 edL~~Ls~~eL~~LE~~Le~~L~~VR~rK~~ll~~l~kk 149 (212)
-++++|+.++|+.+-..|-..+..+-+-|+.+-...+++
T Consensus 53 L~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq 91 (133)
T 1j1d_C 53 LELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKN 91 (133)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHc
Confidence 379999999999999999999999999998876555544
No 14
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=71.84 E-value=17 Score=26.14 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=35.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhH
Q 040096 111 EDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGK 151 (212)
Q Consensus 111 edL~~Ls~~eL~~LE~~Le~~L~~VR~rK~~ll~~l~kk~~ 151 (212)
-+|++|+.++|+.+-..|...+..+-+-|+.+-...+++..
T Consensus 37 L~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~y 77 (107)
T 1ytz_T 37 LNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKY 77 (107)
T ss_dssp CCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh
Confidence 38999999999999999999999999999987665555444
No 15
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=70.65 E-value=14 Score=26.45 Aligned_cols=41 Identities=15% Similarity=0.187 Sum_probs=35.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHH
Q 040096 112 DISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKM 152 (212)
Q Consensus 112 dL~~Ls~~eL~~LE~~Le~~L~~VR~rK~~ll~~l~kk~~~ 152 (212)
+|++|+.++|+.+-..|...+..+-+-|+.+-...+++...
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yE 78 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYE 78 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHH
Confidence 78999999999999999999999999999887655554443
No 16
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=59.59 E-value=1.4 Score=30.05 Aligned_cols=35 Identities=20% Similarity=0.410 Sum_probs=29.4
Q ss_pred HHhHHhhhhhcCcceeeEeecCCCCcccccCCCcchhHHHHhhhhhcC
Q 040096 29 LKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSG 76 (212)
Q Consensus 29 ~KKA~ELsvLCda~valivfS~~gk~~~~~s~~~~~~~ileRY~~~~~ 76 (212)
+|+|+|.+.+++=|.|++.|. ++-+-|+||.....
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~-------------g~~~qI~k~l~~~~ 50 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQ-------------GVLDQMNKYLYSVK 50 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHH-------------HHHHHHHHHHHTCS
T ss_pred HHHHHHHHHhcChHHHHHHHH-------------HHHHHHHHHHHhcC
Confidence 689999999999999997664 38888889887765
No 17
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=58.99 E-value=30 Score=24.92 Aligned_cols=59 Identities=20% Similarity=0.234 Sum_probs=43.6
Q ss_pred CCccchhHHHHHHHhHhHhhhhhhccc--CCCCCCCCCHHHHHHHHHHHHHhHHHHHHHHH
Q 040096 82 PKHENLSNEIERIKRENDRMQIKLRHL--NGEDISSLNPKELIALEDALENGLVSIRDKQS 140 (212)
Q Consensus 82 ~~~e~l~~el~kLkke~~~Lq~~lR~l--~GedL~~Ls~~eL~~LE~~Le~~L~~VR~rK~ 140 (212)
.-.+.|..++.+|+-||..|.+.++.- .+.+=..|+..+=..+--..-.+|...-.+|.
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKea~I~s~~~~Lss~A~~KI 68 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGAVAMRKI 68 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999998762 11355679999988888888888887777763
No 18
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=58.10 E-value=6.4 Score=22.38 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=19.6
Q ss_pred chhHHHHHHHhHhHhhhhhhccc
Q 040096 86 NLSNEIERIKRENDRMQIKLRHL 108 (212)
Q Consensus 86 ~l~~el~kLkke~~~Lq~~lR~l 108 (212)
..+++|+.|+++|..|+.++|.+
T Consensus 11 a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHhhHHHHHHHHHHHHHHHHhc
Confidence 46788999999999999988764
No 19
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=58.00 E-value=43 Score=23.01 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=29.3
Q ss_pred HhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 040096 130 NGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQE 168 (212)
Q Consensus 130 ~~L~~VR~rK~~ll~~l~kk~~~l~een~~L~~~~~~~~ 168 (212)
.+..+-|.++.+.-..+..+...|+.+|..|+..+.+..
T Consensus 25 ~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~ 63 (87)
T 1hjb_A 25 IAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLS 63 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555557888889999999999999887654
No 20
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=56.21 E-value=43 Score=22.49 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=30.2
Q ss_pred HhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 040096 130 NGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQE 168 (212)
Q Consensus 130 ~~L~~VR~rK~~ll~~l~kk~~~l~een~~L~~~~~~~~ 168 (212)
.+..+-|.++...-..+..+...|+.+|..|+..+.+..
T Consensus 25 ~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~ 63 (78)
T 1gu4_A 25 IAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666667888999999999999999987654
No 21
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=56.13 E-value=42 Score=26.25 Aligned_cols=38 Identities=18% Similarity=0.279 Sum_probs=33.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 040096 112 DISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKN 149 (212)
Q Consensus 112 dL~~Ls~~eL~~LE~~Le~~L~~VR~rK~~ll~~l~kk 149 (212)
+|++|+.++|+.+-..|...+..+-+-|+.+-...+++
T Consensus 54 nid~Lse~~L~e~ckELh~~I~~LEeEKYDlE~kvkkq 91 (180)
T 1j1e_C 54 ELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKN 91 (180)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Confidence 89999999999999999999999999999886544443
No 22
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=53.90 E-value=17 Score=29.74 Aligned_cols=48 Identities=17% Similarity=0.237 Sum_probs=2.7
Q ss_pred EEeCCCccchhhhhhhhchHHHhHHhhhhhcCcceeeEeecCCCCccc
Q 040096 9 KRIENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHD 56 (212)
Q Consensus 9 k~Ien~~~RqvtfsKRr~GL~KKA~ELsvLCda~valivfS~~gk~~~ 56 (212)
-.|++...=++|+-||-.||..|..+|+.--|-+=++=.|-=+.++|.
T Consensus 117 ~~iev~~~~~itmrkri~~Itqrlg~ltL~~~~~~eIdLFewA~~L~q 164 (246)
T 1z56_A 117 CRMQDDEVWKVVMELESSAIIRKIAELTLHPVKKGEIDLFEMADKLYK 164 (246)
T ss_dssp ------------------------------------------CTTSGG
T ss_pred cCceeCCEEEEEEeehhhHHHhhheeEEeecCccchhhHHHHHHHHHH
Confidence 445555556899999999999998888765555544444444444444
No 23
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=53.61 E-value=0.49 Score=32.34 Aligned_cols=30 Identities=17% Similarity=0.352 Sum_probs=23.8
Q ss_pred eeeEeecCCCCcccccCCCcchhHHHHhhhhhcC
Q 040096 43 VSLIIYASSGKMHDYCSPSTSLVDILEQYHRQSG 76 (212)
Q Consensus 43 valivfS~~gk~~~~~s~~~~~~~ileRY~~~~~ 76 (212)
||||||.| +|++++.. ++-..+..|++...
T Consensus 16 VaLlvfGp-kkLP~l~r---~lGk~ir~fK~~~~ 45 (78)
T 2l16_A 16 IALIIFGP-SKLPEIGR---AAGRTLLEFKSATK 45 (78)
T ss_dssp HHHHHSCT-TTHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHhheeCc-cHhHHHHH---HHHHHHHHHHHHHH
Confidence 78899998 69999875 38888888887653
No 24
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=51.63 E-value=72 Score=27.98 Aligned_cols=49 Identities=10% Similarity=0.159 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 040096 120 ELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQE 168 (212)
Q Consensus 120 eL~~LE~~Le~~L~~VR~rK~~ll~~l~kk~~~l~een~~L~~~~~~~~ 168 (212)
....--+.+...+...|.+..+.++..+..+..+.++|..++..+++..
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (487)
T 3oja_A 414 AIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEAD 462 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhh
Confidence 3344344566667778888888889999999999999999999887754
No 25
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=51.13 E-value=66 Score=31.97 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=20.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH
Q 040096 144 ETMRKNGKMMEEEHNYLKFVLRQQE 168 (212)
Q Consensus 144 ~~l~kk~~~l~een~~L~~~~~~~~ 168 (212)
+.|+.++..|+++|..|+.++.+..
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999999998876644
No 26
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=50.63 E-value=1.3 Score=31.94 Aligned_cols=50 Identities=14% Similarity=0.247 Sum_probs=38.4
Q ss_pred eCCCccchhhhhhhhchHHHhHHhhhhhcCcceeeEeecCCCCcccccCCCcchhHHHH
Q 040096 11 IENASNRQVTYSKRRNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILE 69 (212)
Q Consensus 11 Ien~~~RqvtfsKRr~GL~KKA~ELsvLCda~valivfS~~gk~~~~~s~~~~~~~ile 69 (212)
|.++.-...||-=.-..|.++.-+||.+| ++.|+|.|+-|-. .+++..|.
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef~l----dTVde~L~ 70 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSFRL----DTVDEELT 70 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEEEE----EEECGGGG
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEEEe----cccchhhh
Confidence 45556667777778888999999999887 9999999997765 33555554
No 27
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=49.62 E-value=31 Score=27.23 Aligned_cols=37 Identities=11% Similarity=0.128 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 040096 132 LVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVLRQQE 168 (212)
Q Consensus 132 L~~VR~rK~~ll~~l~kk~~~l~een~~L~~~~~~~~ 168 (212)
-+.|..+|.++++.|++|...|.++-..|...+..+.
T Consensus 10 ~~~i~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~~N~ 46 (190)
T 3thf_A 10 TNLIKQKMDELIKHLNQKIVSLKREQQTISEECSAND 46 (190)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999988775543
No 28
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=46.85 E-value=54 Score=20.91 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHHHHHhHHHHHHHHHHHH----------HHHHHhhHHHHHHHHHHH
Q 040096 114 SSLNPKELIALEDALENGLVSIRDKQSEKM----------ETMRKNGKMMEEEHNYLK 161 (212)
Q Consensus 114 ~~Ls~~eL~~LE~~Le~~L~~VR~rK~~ll----------~~l~kk~~~l~een~~L~ 161 (212)
+..+++|..++...|-.+=.+ -.++| ..++++...|+.||..|+
T Consensus 8 gpit~qeylevK~ALaaSeAk----iQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 8 GAVTLQEYLELKKALATSEAK----VQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp CSSCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhhHHH----HHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 346778887777666655444 34555 245556666777776665
No 29
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=46.28 E-value=1e+02 Score=26.96 Aligned_cols=43 Identities=2% Similarity=0.123 Sum_probs=27.9
Q ss_pred hchHHHhHHhhhhhcCcceeeEeecCCCCcccccCCCcchhHHHHhhh
Q 040096 25 RNGILKKAKEITVLCDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYH 72 (212)
Q Consensus 25 r~GL~KKA~ELsvLCda~valivfS~~gk~~~~~s~~~~~~~ileRY~ 72 (212)
..=|+-+|+.-|---||..|+ ...+=.-|++-..|+.+|++..
T Consensus 20 GpR~vE~~~s~Ck~~d~~~C~-----DeDwG~kCPsGCrLqg~Ldk~e 62 (390)
T 1deq_A 20 GPRLVERQQSACKETGWPFCS-----DEDWNTKCPSGCRMKGLIDEVD 62 (390)
T ss_pred CCchhhhhccccCCCCCCCCc-----hhhccCCCCccchHHHHHHHhh
Confidence 333455666666666777777 4444455665567999998775
No 30
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=45.73 E-value=61 Score=21.24 Aligned_cols=33 Identities=9% Similarity=0.240 Sum_probs=24.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040096 129 ENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLK 161 (212)
Q Consensus 129 e~~L~~VR~rK~~ll~~l~kk~~~l~een~~L~ 161 (212)
-.+-...|.||.+-|..|..++..|+..+..|.
T Consensus 17 R~AQRafReRK~~~i~~LE~~v~~le~~~~~l~ 49 (70)
T 1gd2_E 17 RAAQRAFRKRKEDHLKALETQVVTLKELHSSTT 49 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778899999999888888777766555443
No 31
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=45.40 E-value=45 Score=19.54 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=15.9
Q ss_pred CCCHHHHHHHHHHHHHhHHHH
Q 040096 115 SLNPKELIALEDALENGLVSI 135 (212)
Q Consensus 115 ~Ls~~eL~~LE~~Le~~L~~V 135 (212)
++|.+||-.||..|+.--.++
T Consensus 16 gfspeelaaleselqalekkl 36 (48)
T 1g6u_A 16 GFSPEELAALESELQALEKKL 36 (48)
T ss_dssp TCSHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 789999999998876544333
No 32
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=45.39 E-value=46 Score=19.67 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=18.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHH
Q 040096 143 METMRKNGKMMEEEHNYLKFVL 164 (212)
Q Consensus 143 l~~l~kk~~~l~een~~L~~~~ 164 (212)
...|..++..|+.||..|++.+
T Consensus 19 naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 19 NSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHh
Confidence 4678888889999999998765
No 33
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=44.68 E-value=47 Score=19.64 Aligned_cols=38 Identities=24% Similarity=0.467 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHH
Q 040096 115 SLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEE 156 (212)
Q Consensus 115 ~Ls~~eL~~LE~~Le~~L~~VR~rK~~ll~~l~kk~~~l~ee 156 (212)
++|-+||.+=-+.++.-+.+++++ +..+++|.+.|++.
T Consensus 1 ~~tk~~l~qkI~kVdrEI~Kte~k----I~~lqkKlkeLee~ 38 (42)
T 2l5g_B 1 GLSKEELIQNMDRVDREITMVEQQ----ISKLKKKQQQLEEE 38 (42)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHh
Confidence 456677777666777777666655 44566666666654
No 34
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=39.39 E-value=73 Score=22.45 Aligned_cols=19 Identities=11% Similarity=-0.003 Sum_probs=13.6
Q ss_pred HHHHHhhHHHHHHHHHHHH
Q 040096 144 ETMRKNGKMMEEEHNYLKF 162 (212)
Q Consensus 144 ~~l~kk~~~l~een~~L~~ 162 (212)
..|..++..|..||..|+.
T Consensus 68 ~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 68 RELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777764
No 35
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=39.30 E-value=1.1e+02 Score=22.52 Aligned_cols=24 Identities=21% Similarity=0.112 Sum_probs=12.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHH
Q 040096 144 ETMRKNGKMMEEEHNYLKFVLRQQ 167 (212)
Q Consensus 144 ~~l~kk~~~l~een~~L~~~~~~~ 167 (212)
+.+.++...|.+++..|...+...
T Consensus 106 e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 106 ESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554443
No 36
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=37.34 E-value=66 Score=23.11 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=26.3
Q ss_pred HHHHHHHhHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHH
Q 040096 124 LEDALENGLVSIRDKQSEKM---ETMRKNGKMMEEEHNYLKFVLR 165 (212)
Q Consensus 124 LE~~Le~~L~~VR~rK~~ll---~~l~kk~~~l~een~~L~~~~~ 165 (212)
+-..++.-+..+|.--+... -.|..++..|.+|-..|+....
T Consensus 63 ~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~he 107 (119)
T 3ol1_A 63 QREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHE 107 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555544333332 4688889999999998876543
No 37
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=32.33 E-value=1.5e+02 Score=23.05 Aligned_cols=38 Identities=16% Similarity=0.262 Sum_probs=32.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 040096 111 EDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKN 149 (212)
Q Consensus 111 edL~~Ls~~eL~~LE~~Le~~L~~VR~rK~~ll~~l~kk 149 (212)
-+|++ +.++|+.+-..|...+..+-+-|+.+-..++++
T Consensus 51 Lnid~-se~~L~e~ckELh~~I~~LEeEKYDlE~kvkkq 88 (182)
T 1ytz_I 51 LSLPG-SMQELQELSKKLHAKIDSVDEERYDTEVKLQKT 88 (182)
T ss_dssp CCCCC-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCC-CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh
Confidence 38999 999999999999999999999998776544443
No 38
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=31.97 E-value=24 Score=24.77 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=23.3
Q ss_pred cCcceeeEeecCCCCcccccCCCcchhHHHHhhhh
Q 040096 39 CDAKVSLIIYASSGKMHDYCSPSTSLVDILEQYHR 73 (212)
Q Consensus 39 Cda~valivfS~~gk~~~~~s~~~~~~~ileRY~~ 73 (212)
|+.--.++|+ |+|..|...++ ..+.+||+.+..
T Consensus 59 C~~gP~v~V~-P~~~~y~~vt~-e~v~~il~~~l~ 91 (110)
T 1m2d_A 59 SMMGPVVVVY-PDGVWYGQVKP-EDVDEIVEKHLK 91 (110)
T ss_dssp GGGCSCEEEE-TTTEEECSCCG-GGHHHHHHHTTT
T ss_pred cCCCCEEEEE-eCCEEEecCCH-HHHHHHHHHHHH
Confidence 4443444444 88988888877 689999998753
No 39
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=31.61 E-value=1.7e+02 Score=22.21 Aligned_cols=44 Identities=23% Similarity=0.154 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh--hHHHHHHHHHH
Q 040096 117 NPKELIALEDALENGLVSIRDKQSEKMETMRKN--GKMMEEEHNYL 160 (212)
Q Consensus 117 s~~eL~~LE~~Le~~L~~VR~rK~~ll~~l~kk--~~~l~een~~L 160 (212)
|+.|...||..-...+.+|+.++.+|-+-..+. -+.|.+.|+.+
T Consensus 3 s~qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafknLv~RN~~~ 48 (155)
T 2aze_A 3 FAQECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHA 48 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999998888888888876664322222 34455555543
No 40
>2qez_A Ethanolamine ammonia-lyase heavy chain; ethanol ammonia lyase large subunit (EUTB), structural genomics; HET: MSE; 2.15A {Listeria monocytogenes serotype 4B}
Probab=31.39 E-value=14 Score=32.83 Aligned_cols=12 Identities=25% Similarity=0.645 Sum_probs=10.1
Q ss_pred ccccccCCCCCC
Q 040096 196 DYAYHVQPIQPN 207 (212)
Q Consensus 196 ~~~f~~qp~qpn 207 (212)
.++.|+||+||-
T Consensus 157 ~ls~RlQPNhPT 168 (455)
T 2qez_A 157 TFSARLQPNHPT 168 (455)
T ss_dssp BCBCEECCCCTT
T ss_pred ceecccCCCCCC
Confidence 368999999993
No 41
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=30.31 E-value=1.3e+02 Score=20.36 Aligned_cols=43 Identities=16% Similarity=0.231 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 040096 116 LNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNY 159 (212)
Q Consensus 116 Ls~~eL~~LE~~Le~~L~~VR~rK~~ll~~l~kk~~~l~een~~ 159 (212)
+|++=|..||..++.++..|---++++ +.|+.+...|.+++..
T Consensus 3 MS~ElleqLE~KIq~avdtI~lLqmEi-eELKekN~~L~~e~~e 45 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTITLLQMEI-EELKEKNNSLSQEVQN 45 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 578889999999999999876655433 4455554444444444
No 42
>3abq_A Ethanolamine ammonia-lyase heavy chain; (beta/alpha)8 fold, cobalt, cobalamin; HET: B12; 2.05A {Escherichia coli} PDB: 3abo_A* 3abr_A* 3abs_A* 3any_A* 3ao0_A*
Probab=30.18 E-value=14 Score=32.82 Aligned_cols=12 Identities=17% Similarity=0.423 Sum_probs=10.1
Q ss_pred ccccccCCCCCC
Q 040096 196 DYAYHVQPIQPN 207 (212)
Q Consensus 196 ~~~f~~qp~qpn 207 (212)
.++.|+||+||-
T Consensus 156 ~ls~RlQPNhPT 167 (453)
T 3abq_A 156 TFSARLQPNDTR 167 (453)
T ss_dssp BCEEEECCCCTT
T ss_pred ceecccCCCCCC
Confidence 369999999993
No 43
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=27.68 E-value=1.1e+02 Score=21.56 Aligned_cols=28 Identities=25% Similarity=0.210 Sum_probs=22.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 040096 143 METMRKNGKMMEEEHNYLKFVLRQQEIA 170 (212)
Q Consensus 143 l~~l~kk~~~l~een~~L~~~~~~~~~~ 170 (212)
+..+++++..|+.||..|+......++.
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~~~LE~~ 41 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEKRMLEAQ 41 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999888766543
No 44
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=26.88 E-value=3e+02 Score=24.11 Aligned_cols=56 Identities=13% Similarity=0.316 Sum_probs=33.5
Q ss_pred CCCCcccccCCCcchhHHHHhhhhhcCCcccCCCccchhHHHHHHHhHhHhhhhhhcc
Q 040096 50 SSGKMHDYCSPSTSLVDILEQYHRQSGRRLWDPKHENLSNEIERIKRENDRMQIKLRH 107 (212)
Q Consensus 50 ~~gk~~~~~s~~~~~~~ileRY~~~~~~~~~~~~~e~l~~el~kLkke~~~Lq~~lR~ 107 (212)
++..+=.|||....+.+.|.+|+..-..++. ..+.+..++..+..+...|...+..
T Consensus 11 ~~~~~G~~CPT~C~i~d~L~k~e~~V~~~l~--~LE~~l~elsn~ts~v~~Lvk~iq~ 66 (409)
T 1m1j_C 11 LDERFGSYCPTTCGIADFFNKYRLTTDGELL--EIEGLLQQATNSTGSIEYLIQHIKT 66 (409)
T ss_dssp CCGGGCCEEECTTHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCcCCCcccHHHHHHHHHhcchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445668888777899999999985443321 1233444555555555555444433
No 45
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=23.48 E-value=2.4e+02 Score=21.29 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=16.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHH
Q 040096 144 ETMRKNGKMMEEEHNYLKFVLR 165 (212)
Q Consensus 144 ~~l~kk~~~l~een~~L~~~~~ 165 (212)
..+..+.+.|++||..|-..+.
T Consensus 113 n~lE~kl~kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 113 NVLQQKLSDLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888889999988775443
No 46
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=23.17 E-value=40 Score=22.51 Aligned_cols=18 Identities=17% Similarity=0.333 Sum_probs=10.0
Q ss_pred HHHHHhhHHHHHHHHHHH
Q 040096 144 ETMRKNGKMMEEEHNYLK 161 (212)
Q Consensus 144 ~~l~kk~~~l~een~~L~ 161 (212)
+.|+.+++.|++.|..|.
T Consensus 18 evLKe~I~EL~e~~~qLE 35 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLE 35 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555555544
No 47
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=22.58 E-value=15 Score=30.77 Aligned_cols=20 Identities=10% Similarity=0.233 Sum_probs=15.3
Q ss_pred hhcCcceeeEeecCCCCccc
Q 040096 37 VLCDAKVSLIIYASSGKMHD 56 (212)
Q Consensus 37 vLCda~valivfS~~gk~~~ 56 (212)
+-.+-|-++-+|||.|++|+
T Consensus 4 ~~~~yd~~~t~fSP~Grl~Q 23 (288)
T 3nzj_F 4 IGTGYDLSNSVFSPDGRNFQ 23 (288)
T ss_dssp -CCCTTSSTTCCCTTSCCHH
T ss_pred CcCCccCCcccCCCCCchHH
Confidence 44556778889999999985
No 48
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=22.05 E-value=2.4e+02 Score=20.71 Aligned_cols=66 Identities=12% Similarity=0.230 Sum_probs=30.7
Q ss_pred HHHHHHHhHhHhhhhhhcccCCCCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 040096 89 NEIERIKRENDRMQIKLRHLNGEDISSLNPKELIALEDALENGLVSIRDKQSEKMETMRKNGKMMEEEHNYLKFVL 164 (212)
Q Consensus 89 ~el~kLkke~~~Lq~~lR~l~GedL~~Ls~~eL~~LE~~Le~~L~~VR~rK~~ll~~l~kk~~~l~een~~L~~~~ 164 (212)
.|+.+++.+++.|+.++..+ -+++..|-..|...-..+.+-+ +-++.++++...|++++..|...+
T Consensus 68 dEl~k~~~~~~~L~~~l~~~---------~kE~~~lK~el~~~~~k~e~~~-~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENK---------DKEIYDLKHELIAAQIKAESSA-KEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555544332 3344444444443333332221 112445555555555555555444
No 49
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=21.27 E-value=3.2e+02 Score=21.83 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=9.8
Q ss_pred cchhHHHHHHHhHhHhhhhhh
Q 040096 85 ENLSNEIERIKRENDRMQIKL 105 (212)
Q Consensus 85 e~l~~el~kLkke~~~Lq~~l 105 (212)
+.++.+++.++.++..++.++
T Consensus 93 ~aL~kEie~~~~~i~~lE~ei 113 (256)
T 3na7_A 93 RSLNIEEDIAKERSNQANREI 113 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445554444444444443
No 50
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=20.88 E-value=21 Score=29.31 Aligned_cols=17 Identities=6% Similarity=0.393 Sum_probs=10.8
Q ss_pred CcceeeEeecCCCCccc
Q 040096 40 DAKVSLIIYASSGKMHD 56 (212)
Q Consensus 40 da~valivfS~~gk~~~ 56 (212)
+-|-++-+|||.|++|.
T Consensus 11 ~yd~~~t~fSp~Grl~Q 27 (264)
T 3h4p_A 11 AYDRAITVFSPEGRLYQ 27 (264)
T ss_dssp -----CCCCCSSSSCHH
T ss_pred ccCCCcceECCCCeeHH
Confidence 34667889999999984
No 51
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C
Probab=20.80 E-value=78 Score=25.54 Aligned_cols=33 Identities=18% Similarity=0.125 Sum_probs=23.0
Q ss_pred CCCCCCCHHHHHHHH--HHHHHhHHHHHHHHHHHH
Q 040096 111 EDISSLNPKELIALE--DALENGLVSIRDKQSEKM 143 (212)
Q Consensus 111 edL~~Ls~~eL~~LE--~~Le~~L~~VR~rK~~ll 143 (212)
.-++.++++||..|+ ..=+.-|..+|.++.+-|
T Consensus 67 ~~~~~~~~~e~~~~~~d~eDe~fL~~~r~~Rl~el 101 (245)
T 1a0r_P 67 RFSRKMSVQEYELIHKDKEDENCLRKYRRQCMQDM 101 (245)
T ss_dssp -CCCCSCHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred hhhccCChhhhhhcccccccHHHHHHHHHHHHHHH
Confidence 456678999998887 233457788888886555
No 52
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=20.66 E-value=63 Score=21.44 Aligned_cols=25 Identities=8% Similarity=0.296 Sum_probs=19.8
Q ss_pred eEeecCCCCcccccCCCcchhHHHHh
Q 040096 45 LIIYASSGKMHDYCSPSTSLVDILEQ 70 (212)
Q Consensus 45 livfS~~gk~~~~~s~~~~~~~ileR 70 (212)
+.||.|.|...+++.. +++.++...
T Consensus 8 i~v~tP~G~~~~lp~G-aT~~D~A~~ 32 (78)
T 3hvz_A 8 VFVFTPKGDVISLPIG-STVIDFAYA 32 (78)
T ss_dssp EEEECTTSCEEEEETT-CBHHHHHHH
T ss_pred EEEECCCCCEEEecCC-CCHHHHHHH
Confidence 6799999999999887 466666543
No 53
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.40 E-value=4.5e+02 Score=23.23 Aligned_cols=17 Identities=24% Similarity=0.194 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHHHHH
Q 040096 150 GKMMEEEHNYLKFVLRQ 166 (212)
Q Consensus 150 ~~~l~een~~L~~~~~~ 166 (212)
.+.++++...|...+++
T Consensus 539 ~~~~~~~~~~le~~~~~ 555 (597)
T 3oja_B 539 TEDLEQENIALEKQLDN 555 (597)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhhHHHHHHHhh
Confidence 33344555555554433
No 54
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=20.07 E-value=1.6e+02 Score=18.10 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=16.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHH
Q 040096 145 TMRKNGKMMEEEHNYLKFVLRQQ 167 (212)
Q Consensus 145 ~l~kk~~~l~een~~L~~~~~~~ 167 (212)
.|-+.+..|..||..|++.+...
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dN 29 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDN 29 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhh
Confidence 45556777788888888877543
No 55
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=20.01 E-value=1e+02 Score=18.97 Aligned_cols=14 Identities=14% Similarity=-0.016 Sum_probs=9.4
Q ss_pred CCCCCCHHHHHHHH
Q 040096 112 DISSLNPKELIALE 125 (212)
Q Consensus 112 dL~~Ls~~eL~~LE 125 (212)
-|..||++||..--
T Consensus 6 fLk~ls~eEL~~rl 19 (51)
T 2jo8_A 6 FLKSWTVEDLQKRL 19 (51)
T ss_dssp GGGGSCHHHHHHHH
T ss_pred HHHhCCHHHHHHHH
Confidence 35667888886543
Done!