BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040097
         (516 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus
 pdb|1BJW|B Chain B, Aspartate Aminotransferase From Thermus Thermophilus
          Length = 382

 Score = 29.3 bits (64), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 23/42 (54%)

Query: 265 DNGIDEAVEEFLPSAVYRQCCFSLYTKMVDEFPRVTVHSPFW 306
           +NG+    EE + +   +Q  F+L+  ++D    V V SP+W
Sbjct: 84  ENGLSVTPEETIVTVGGKQALFNLFQAILDPGDEVIVLSPYW 125


>pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With
           Maleate
 pdb|1BKG|B Chain B, Aspartate Aminotransferase From Thermus Thermophilus With
           Maleate
 pdb|1BKG|C Chain C, Aspartate Aminotransferase From Thermus Thermophilus With
           Maleate
 pdb|1BKG|D Chain D, Aspartate Aminotransferase From Thermus Thermophilus With
           Maleate
          Length = 385

 Score = 29.3 bits (64), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 23/42 (54%)

Query: 265 DNGIDEAVEEFLPSAVYRQCCFSLYTKMVDEFPRVTVHSPFW 306
           +NG+    EE + +   +Q  F+L+  ++D    V V SP+W
Sbjct: 84  ENGLSVTPEETIVTVGGKQALFNLFQAILDPGDEVIVLSPYW 125


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.137    0.452 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,865,933
Number of Sequences: 62578
Number of extensions: 645352
Number of successful extensions: 1655
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1649
Number of HSP's gapped (non-prelim): 6
length of query: 516
length of database: 14,973,337
effective HSP length: 103
effective length of query: 413
effective length of database: 8,527,803
effective search space: 3521982639
effective search space used: 3521982639
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)