Query 040097
Match_columns 516
No_of_seqs 188 out of 1592
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 07:38:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040097.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040097hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 95.4 0.015 5E-07 42.8 3.9 41 34-74 34-74 (76)
2 1wj2_A Probable WRKY transcrip 95.2 0.017 5.9E-07 42.6 3.9 41 34-74 37-77 (78)
3 2rpr_A Flywch-type zinc finger 89.5 0.45 1.5E-05 36.2 4.7 46 22-74 26-74 (87)
4 1cxq_A Avian sarcoma virus int 87.3 2.8 9.5E-05 35.5 9.1 69 194-269 12-80 (162)
5 1c0m_A Protein (integrase); HI 86.6 2.9 0.0001 38.1 9.4 69 194-269 11-79 (238)
6 3kks_A Integrase, IN; beta-str 85.5 2.5 8.5E-05 35.0 7.7 64 194-269 3-66 (152)
7 3l3u_A POL polyprotein; DNA in 85.0 2.4 8.3E-05 35.8 7.4 63 194-268 10-72 (163)
8 3f9k_A Integrase; protein-prot 80.9 8.6 0.00029 34.0 9.8 63 194-268 60-122 (210)
9 2x78_A Integrase; viral protei 79.2 9.9 0.00034 33.1 9.5 67 194-268 14-81 (200)
10 3av9_A Integrase, IN; protein- 74.2 6.1 0.00021 34.1 6.5 63 194-268 30-92 (183)
11 3hph_A Integrase, IN; protein- 74.1 6.9 0.00024 34.9 7.0 64 194-269 61-124 (219)
12 3hot_A Transposable element ma 71.3 20 0.00067 34.4 10.0 59 205-266 185-252 (345)
13 1ex4_A Integrase; SH3-like dom 65.9 28 0.00095 31.4 9.3 64 194-269 10-73 (239)
14 1k6y_A Integrase; HIV-1, domai 64.1 39 0.0013 29.5 9.8 63 194-268 59-121 (212)
15 3oym_A PFV integrase, P42IN; p 51.1 49 0.0017 32.1 8.8 69 194-269 126-194 (395)
16 2l0z_A Glycoprotein G2; zinc-b 48.8 7.5 0.00026 24.3 1.4 17 450-466 20-36 (42)
17 1q1v_A DEK protein; winged-hel 46.0 78 0.0027 22.5 7.0 39 79-117 11-52 (70)
18 1bco_A MUA domain II, bacterio 39.9 59 0.002 30.9 7.1 71 194-269 17-95 (327)
19 1fme_A FSD-EY peptide; beta-BE 38.8 19 0.00066 19.6 1.9 17 2-18 9-25 (28)
20 2bw3_A Transposase; DNA recomb 35.9 1.4E+02 0.0048 30.2 9.8 69 223-295 131-201 (534)
21 2lsn_A Reverse transcriptase; 32.2 1.8E+02 0.0063 24.4 8.2 75 192-268 6-88 (165)
22 1c6v_A Protein (SIV integrase) 27.9 1.3E+02 0.0044 24.4 6.6 63 194-268 10-72 (164)
23 3tvz_A Putative uncharacterize 25.0 2.8E+02 0.0095 23.4 8.2 84 144-254 16-103 (172)
24 3f2k_A Histone-lysine N-methyl 23.7 3E+02 0.01 24.1 8.6 61 203-266 65-133 (226)
25 2nrr_A Uvrabc system protein C 22.6 1E+02 0.0035 25.9 4.6 63 194-276 37-99 (159)
26 2qh9_A UPF0215 protein AF_1433 22.4 3.7E+02 0.013 23.0 8.5 68 194-267 8-75 (184)
27 2nrt_A Uvrabc system protein C 20.8 1.4E+02 0.0047 26.6 5.4 63 194-276 42-104 (220)
28 2lju_A Putative oxidoreductase 20.8 89 0.003 24.4 3.6 27 1-31 62-88 (108)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=95.38 E-value=0.015 Score=42.84 Aligned_cols=41 Identities=15% Similarity=0.196 Sum_probs=36.1
Q ss_pred cEEEEEeecCCCccEEEEEEccCcceEEEEecCCCceeccc
Q 040097 34 TCVSCECSNLHCDWKITAVKEHRSNVFVICDITPMHTCNQH 74 (516)
Q Consensus 34 ~~~~~~C~~~gCp~rv~~~~~~~~~~~~V~~~~~~Hnc~~~ 74 (516)
.|..++|+..|||++-.+.+..+++...++++.++|||+.+
T Consensus 34 PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 74 (76)
T 2ayd_A 34 PRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74 (76)
T ss_dssp CEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCC
T ss_pred ceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCC
Confidence 46779999999999999999877777888899999999864
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=95.22 E-value=0.017 Score=42.65 Aligned_cols=41 Identities=10% Similarity=0.142 Sum_probs=35.7
Q ss_pred cEEEEEeecCCCccEEEEEEccCcceEEEEecCCCceeccc
Q 040097 34 TCVSCECSNLHCDWKITAVKEHRSNVFVICDITPMHTCNQH 74 (516)
Q Consensus 34 ~~~~~~C~~~gCp~rv~~~~~~~~~~~~V~~~~~~Hnc~~~ 74 (516)
.|..++|+..|||++-.+.+..+++...++++.++|||+.+
T Consensus 37 PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p 77 (78)
T 1wj2_A 37 PRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77 (78)
T ss_dssp CEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred eeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence 47779999999999999999877777778899999999863
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=89.51 E-value=0.45 Score=36.21 Aligned_cols=46 Identities=15% Similarity=0.210 Sum_probs=33.6
Q ss_pred cCceEEEEeeCCcEEEEEeec---CCCccEEEEEEccCcceEEEEecCCCceeccc
Q 040097 22 DGFKLCIIHNTTTCVSCECSN---LHCDWKITAVKEHRSNVFVICDITPMHTCNQH 74 (516)
Q Consensus 22 ~gf~~~~~rs~~~~~~~~C~~---~gCp~rv~~~~~~~~~~~~V~~~~~~Hnc~~~ 74 (516)
.|+.|...+....+..+.|+. .+|++++..... + +. ....|||++.
T Consensus 26 ~Gy~Y~~~~~~~~~~yWrC~~~~~~kCrARi~T~~~---~---~~-~~~~HnH~p~ 74 (87)
T 2rpr_A 26 ESFLYRKEKAAGEKVYWMCRDQARLGCRSRAITQGH---R---IM-VMRSHCHQPD 74 (87)
T ss_dssp TTEEEEEEEECSSCEEEEEGGGTTSCCCCEEEEETT---E---EE-ECSCCSSCCC
T ss_pred CCEEEEeeecCCCcEEEEecCCCCCCCCEEEEEcCC---C---EE-CCCCcCCCCc
Confidence 477788777777788899986 589999887632 2 22 4567999864
No 4
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=87.31 E-value=2.8 Score=35.49 Aligned_cols=69 Identities=10% Similarity=-0.117 Sum_probs=45.3
Q ss_pred eEEEEeCeeecCCCCceeEEEEEecCCCCeEEEEEEEeeccccccHHHHHHHHHhccCCCCCCcEEEEcCCcchHH
Q 040097 194 MLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGID 269 (516)
Q Consensus 194 ~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~a~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l~ 269 (516)
.++.+|-|+.... +|..++++.+|...+. ++++.+- +++.+.-..+|+.+....+ .|..|.||+.....
T Consensus 12 ~~~~~D~~~~~~~-~g~~yl~~~iD~~Sr~-i~~~~~~-~~~~~~v~~~l~~~~~~~g----~p~~i~sDnG~~f~ 80 (162)
T 1cxq_A 12 QIWQTDFTLEPRM-APRSWLAVTVDTASSA-IVVTQHG-RVTSVAAQHHWATAIAVLG----RPKAIKTDNGSCFT 80 (162)
T ss_dssp CEEEEEEEECGGG-TTSCEEEEEEETTTCC-EEEEEES-SCCHHHHHHHHHHHHHHHC----CCSEEECCSCHHHH
T ss_pred CEEEeeeeecccC-CCCEEEEEEEEcCCCe-EEEEECC-CccHHHHHHHHHHHHHHHC----CCeEEEeCCchhhh
Confidence 5788999887543 3456677778877654 4566665 5666655555555555443 26799999987753
No 5
>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A
Probab=86.64 E-value=2.9 Score=38.13 Aligned_cols=69 Identities=10% Similarity=-0.131 Sum_probs=47.5
Q ss_pred eEEEEeCeeecCCCCceeEEEEEecCCCCeEEEEEEEeeccccccHHHHHHHHHhccCCCCCCcEEEEcCCcchHH
Q 040097 194 MLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGID 269 (516)
Q Consensus 194 ~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~a~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l~ 269 (516)
.++.+|.|+.... ++..++++.+|.... +++++.+- +++.+.-..+|+.+....+. |..|.||+.....
T Consensus 11 ~~w~~D~~~~~~~-~g~~yl~~~iD~~Sr-~i~~~~~~-~~~~~~v~~~l~~~~~~~g~----p~~i~sDnG~~f~ 79 (238)
T 1c0m_A 11 QIWQTDFTLEPRM-APRSWLAVTVDTASS-AIVVTQHG-RVTSVAVQHHWATAIAVLGR----PKAIKTDNGSCFT 79 (238)
T ss_dssp SEEEEEEEECGGG-CSSCEEEEEEETTTC-CEEEEEES-SCCHHHHHHHHHHHHHHHCC----CSEEEECSCHHHH
T ss_pred CEEEEeecccccc-CCCEEEEEEEECCCC-CEEEEEcc-CCCHHHHHHHHHHHHHHhCC----CcEEEECCCCccc
Confidence 5789999987543 344666777787654 45567765 77777766667666655542 6799999987753
No 6
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=85.50 E-value=2.5 Score=35.04 Aligned_cols=64 Identities=17% Similarity=0.108 Sum_probs=43.7
Q ss_pred eEEEEeCeeecCCCCceeEEEEEecCCCCeEEEEEEEeeccccccHHHHHHHHHhccCCCCCCcEEEEcCCcchHH
Q 040097 194 MLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGID 269 (516)
Q Consensus 194 ~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~a~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l~ 269 (516)
.++.+|.|+..+ .++++.+|...+.. +++.+- +++.+...-+|..+....+ |..|.||+.....
T Consensus 3 ~~w~~D~t~~~~-----~y~~~~iD~~sr~~-~~~~~~-~~~~~~~~~~l~~~~~~~g-----p~~i~sDnG~~f~ 66 (152)
T 3kks_A 3 HLWQMDNTHWNK-----TIIWVAVETNSGLV-EAQVIP-EETALQVALCILQLIQRYT-----VLHLHSDNGPCFT 66 (152)
T ss_dssp CEEEEEEEEETT-----EEEEEEEETTTCCE-EEEEES-SSCHHHHHHHHHHHHHHSC-----CSEEEECSCHHHH
T ss_pred cEEEEeeeeeCC-----EEEEEEEEcCCCcE-EEEEeC-CcCHHHHHHHHHHHHHHhC-----CcEEecCCchHhh
Confidence 578899998843 26677788776654 566554 6666666666666655554 5889999987754
No 7
>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...
Probab=84.96 E-value=2.4 Score=35.80 Aligned_cols=63 Identities=14% Similarity=0.085 Sum_probs=43.1
Q ss_pred eEEEEeCeeecCCCCceeEEEEEecCCCCeEEEEEEEeeccccccHHHHHHHHHhccCCCCCCcEEEEcCCcchH
Q 040097 194 MLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGI 268 (516)
Q Consensus 194 ~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~a~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l 268 (516)
.++.+|.|+..++ ++++.+|...+.. .++.+ .+++.+.-..+|..+....+ +..|.||+....
T Consensus 10 ~~w~~D~t~~~g~-----y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~~-----~~~i~sD~G~~f 72 (163)
T 3l3u_A 10 GIWQLDCTHLEGK-----VILVAVHVASGYI-EAEVI-PAETGQETAYFLLKLAGRWP-----VKTVHTDNGSNF 72 (163)
T ss_dssp TEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SSCCHHHHHHHHHHHHHHSC-----CCEEEECCCGGG
T ss_pred CEEEEEecccCCc-----EEEEEEecCCCcE-EEEEe-CCCcHHHHHHHHHHHHHHcC-----CcEEeecChHhh
Confidence 5788999998642 5777888877654 56665 45566666666665555543 368999998764
No 8
>3f9k_A Integrase; protein-protein complex, AIDS, DNA integration, endonuclease magnesium, metal-binding, multifunctional enzyme; 3.20A {Human immunodeficiency virus type 2} PDB: 1e0e_A
Probab=80.93 E-value=8.6 Score=34.00 Aligned_cols=63 Identities=14% Similarity=0.036 Sum_probs=41.5
Q ss_pred eEEEEeCeeecCCCCceeEEEEEecCCCCeEEEEEEEeeccccccHHHHHHHHHhccCCCCCCcEEEEcCCcchH
Q 040097 194 MLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGI 268 (516)
Q Consensus 194 ~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~a~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l 268 (516)
.++.+|-|+..++ ++++.+|.... ++.++.+-. ++.+...-+|..+....+ +| .|.||+....
T Consensus 60 ~~w~~D~~~~~~~-----y~l~~vD~~sr-~~~~~~~~~-~~~~~~~~~l~~~~~~~g----~~-~i~sDnG~~F 122 (210)
T 3f9k_A 60 GTWQMDCTHLEGK-----IIIVAVHVASG-FIEAEVIPQ-ESGRQTALFLLKLASRWP----IT-HLHTDNGANF 122 (210)
T ss_dssp TEEEEEEEEETTE-----EEEEEEETTTT-EEEEEEESS-CCHHHHHHHHHHHHTTSC----CS-EEEECCCTTT
T ss_pred CeEeEeecccCCe-----EEEEEEEcCCC-cEEEEEeCC-cchHHHHHHHHHHHHHcC----CC-EEEeCCCchh
Confidence 4778998888543 46677787776 566665544 566666666655555544 13 4999998764
No 9
>2x78_A Integrase; viral protein, DNA-directed DNA polyme nucleotidyltransferase, DNA integration, aspartyl protease, recombination, transferase; 2.00A {Human spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A
Probab=79.21 E-value=9.9 Score=33.12 Aligned_cols=67 Identities=13% Similarity=0.028 Sum_probs=42.2
Q ss_pred eEEEEeC-eeecCCCCceeEEEEEecCCCCeEEEEEEEeeccccccHHHHHHHHHhccCCCCCCcEEEEcCCcchH
Q 040097 194 MLLTVDG-WEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGI 268 (516)
Q Consensus 194 ~vi~~D~-t~~~~~y~~~l~~~~g~d~~~~~~~la~a~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l 268 (516)
.++.+|- ++.... +|..++++.+|...+. ++++.+ .+.+.+...-+|+.+... +.|..|.||+....
T Consensus 14 ~~~~~D~~~~~~~~-~g~~y~~~~iD~~Sr~-~~~~~~-~~~~~~~~~~~l~~~~~~-----g~p~~i~sDnG~~f 81 (200)
T 2x78_A 14 DKFFIDYIGPLPPS-QGYLYVLVVVDGMTGF-TWLYPT-KAPSTSATVKSLNVLTSI-----AIPRVIHSDQGAAF 81 (200)
T ss_dssp SEEEEEEECCCSCB-TTBCEEEEEEETTTCC-EEEEEE-SSSCHHHHHHHHHHHTTT-----CCCSEEEECSCHHH
T ss_pred cEEEEEEeCCCccC-CCCeEEEEEEeCCCCc-EEEEEC-CCCCHHHHHHHHHHHHHh-----CCCcEEEecCCcce
Confidence 4678886 444333 5667788888877654 456665 566665555555444332 23789999997764
No 10
>3av9_A Integrase, IN; protein-protein interactions, HIV, recombination-inhibitor C; 1.70A {Human immunodeficiency virus type 1} PDB: 3ava_A 3avb_A 3avc_A 3avg_A 3avh_A 3avi_A 3avj_A 3avk_A 3avl_A 3avm_A 3avn_A 3nf6_A* 3nf7_A* 3nf8_A* 3nf9_A* 3nfa_A* 3avf_A
Probab=74.19 E-value=6.1 Score=34.14 Aligned_cols=63 Identities=14% Similarity=0.079 Sum_probs=36.3
Q ss_pred eEEEEeCeeecCCCCceeEEEEEecCCCCeEEEEEEEeeccccccHHHHHHHHHhccCCCCCCcEEEEcCCcchH
Q 040097 194 MLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGI 268 (516)
Q Consensus 194 ~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~a~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l 268 (516)
.++.+|.++..+ .. .++.+|...+.. +++.+-. ++.+....++..+.... . +..|.+|+....
T Consensus 30 ~~w~~D~~~~~g----~~-~l~~vD~~Sr~~-~~~~~~~-~~~~~~~~~~~~~~~~~---~--~~~i~sDnG~ef 92 (183)
T 3av9_A 30 GIWQLDCTHLEG----KV-ILVAVHVASGYI-EAEVIPA-ETGQETAYFLLKLAGRW---P--VKTVHTDNGSNF 92 (183)
T ss_dssp TEEEEEEEEETT----EE-EEEEEETTTTEE-EEEEESS-CCHHHHHHHHHHHHHHS---C--CCEEECSSHHHH
T ss_pred CEEEEeccccCC----cE-EEEEEECCCCCE-EEEEeCC-ccchHHHHHHHHHHHHc---C--CcEEEecCchhc
Confidence 578899888733 22 344457766554 6666554 44444443333333333 2 478999997664
No 11
>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A
Probab=74.07 E-value=6.9 Score=34.87 Aligned_cols=64 Identities=11% Similarity=-0.002 Sum_probs=41.7
Q ss_pred eEEEEeCeeecCCCCceeEEEEEecCCCCeEEEEEEEeeccccccHHHHHHHHHhccCCCCCCcEEEEcCCcchHH
Q 040097 194 MLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGID 269 (516)
Q Consensus 194 ~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~a~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l~ 269 (516)
.++.+|-|+..++ ++++.+|...... .++.+ .+++.+...-+|..+....+ |..|.||+.....
T Consensus 61 ~~w~~D~t~~~~~-----y~~~~iD~~Sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~g-----p~~i~sDnG~~F~ 124 (219)
T 3hph_A 61 DHWQVDYTHYEDK-----IILVWVETNSGLI-YAERV-KGETGQEFRVQTMKWYAMFA-----PKSLQSDNGPAFV 124 (219)
T ss_dssp CEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SCCCHHHHHHHHHHHHHHHC-----CCEEEECCCHHHH
T ss_pred ceEEEEEecCCCE-----EEEEEEeCCCCcE-EEEEe-CCCCHHHHHHHHHHHHHHhC-----CcEEEeCCCchhh
Confidence 4677898876432 6677788877655 55554 45555555555555555554 4799999987754
No 12
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=71.33 E-value=20 Score=34.36 Aligned_cols=59 Identities=17% Similarity=0.156 Sum_probs=38.8
Q ss_pred CCCCceeEEEEEecCCCCeEEEEEEEee---ccccccHHHHHHHHHhcc----CCCC--CCcEEEEcCCcc
Q 040097 205 SPYKSVMLVAVCRDGNDAVLPIAFCEVV---EENLDSWAFFLKNLNYGL----RLER--GEGLCIMGDGDN 266 (516)
Q Consensus 205 ~~y~~~l~~~~g~d~~~~~~~la~a~~~---~E~~~~~~w~l~~l~~~~----~~~~--~~~~~iitD~~~ 266 (516)
..+++.++++.+.+.+| .+++.+++ .-+.+.|..+|+.+...+ +... +.+.+|+.|...
T Consensus 185 ~~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~~~y~~~L~~~~~~~~~~~p~~~~~~~~~~~~~Dna~ 252 (345)
T 3hot_A 185 NRFGKKTMLCVWWDQSG---VIYYELLKPGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAP 252 (345)
T ss_dssp CTTCCEEEEEEEEESSS---EEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHSTTCC---CCCEEECCCCT
T ss_pred cCcCCcEEEEEEEcccC---ceeeEecCCCCcccHHHHHHHHHHHHHHHHHhchhhhcCCCceEEEECCCC
Confidence 34566777777888877 56777776 456778888887765443 2110 125789999865
No 13
>1ex4_A Integrase; SH3-like domain, nonspecific DNA binding beta sheet, CIS-Pro viral protein; HET: CPS; 2.80A {Human immunodeficiency virus 1} SCOP: b.34.7.1 c.55.3.2 PDB: 1qmc_A 1ihv_A 1ihw_A
Probab=65.89 E-value=28 Score=31.36 Aligned_cols=64 Identities=16% Similarity=0.061 Sum_probs=36.9
Q ss_pred eEEEEeCeeecCCCCceeEEEEEecCCCCeEEEEEEEeeccccccHHHHHHHHHhccCCCCCCcEEEEcCCcchHH
Q 040097 194 MLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGID 269 (516)
Q Consensus 194 ~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~a~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l~ 269 (516)
.++.+|.|+..+ . +.++.+|.... +++++.+-. ++.....-++..+.... . +..|.||+.....
T Consensus 10 ~~w~~D~t~~~g----~-~~l~~vD~~Sr-~i~~~~~~~-~~~~~~~~~~~~~~~~~---~--~~~i~sDnG~eF~ 73 (239)
T 1ex4_A 10 GIWQLDCTHLEG----K-VILVAVHVASG-YIEAEVIPA-ETGQETAYFLLKLAGRW---P--VKTIHTDNGSNFT 73 (239)
T ss_dssp GEEEEEEEEETT----E-EEEEEECTTTC-CEEEECCSS-SSTTHHHHHHHHHHHHS---C--CCEEEECCCHHHH
T ss_pred CEEEEeccccCC----e-EEEEEEECCCC-eEEEEEeCC-CCHHHHHHHHHHHHHhc---C--CcEEEecCcHHHH
Confidence 478999999832 2 23444466544 456665554 44444444433333332 2 5889999987653
No 14
>1k6y_A Integrase; HIV-1, domain organization, transferase; 2.40A {Human immunodeficiency virus 1} SCOP: a.4.10.1 c.55.3.2 PDB: 1wjb_A 1wjd_A 1wjf_A 1wja_A 1wjc_A 1wje_A
Probab=64.13 E-value=39 Score=29.51 Aligned_cols=63 Identities=14% Similarity=0.051 Sum_probs=35.8
Q ss_pred eEEEEeCeeecCCCCceeEEEEEecCCCCeEEEEEEEeeccccccHHHHHHHHHhccCCCCCCcEEEEcCCcchH
Q 040097 194 MLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGI 268 (516)
Q Consensus 194 ~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~a~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l 268 (516)
.++.+|.++..+ . +.++.+|..... ++++.+-.. +.+...-++..+....+ +..|.||+....
T Consensus 59 ~~w~~D~~~~~~----~-~~l~~vD~~Sr~-~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~i~sDnG~~f 121 (212)
T 1k6y_A 59 GIWQLDCTHLEG----K-VILVAVHVASGY-IEAEVIPAE-TGQETAYFLLKLAGRWP-----VKTVHTDNGSNF 121 (212)
T ss_dssp TEEEEEEEEETT----E-EEEEEEETTTTE-EEEEEESSC-CHHHHHHHHHHHHHHSC-----CCEEECCCSTTT
T ss_pred CeeeEEEecCCC----e-EEEEEEEccCCc-EEEEEecCc-chHHHHHHHHHHHHhcC-----CeEEEcCCCccc
Confidence 577889888722 2 244445665544 455655544 44444444443433332 478999998764
No 15
>3oym_A PFV integrase, P42IN; protein-DNA complex; HET: DNA; 2.02A {Human spumaretrovirus} PDB: 3oyn_A* 3s3o_A* 4be2_A* 3l2q_A 3l2s_A 3l2r_A* 3l2u_A* 3l2v_A* 3l2w_A* 3l2t_A* 3os1_A* 3os2_A* 3os0_A* 3oya_A* 3oy9_A* 3oyc_A* 3oyd_A* 3oye_A* 3oyb_A* 3oyg_A* ...
Probab=51.06 E-value=49 Score=32.15 Aligned_cols=69 Identities=14% Similarity=0.067 Sum_probs=42.3
Q ss_pred eEEEEeCeeecCCCCceeEEEEEecCCCCeEEEEEEEeeccccccHHHHHHHHHhccCCCCCCcEEEEcCCcchHH
Q 040097 194 MLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGID 269 (516)
Q Consensus 194 ~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~a~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l~ 269 (516)
.++.+|-+.....-++..++++.+|..... +.++.+-. .+.+.-..+|..+. .. +.|..|+||+.....
T Consensus 126 ~~~~~D~~~~~~~~~g~~y~l~~vD~~sr~-~~~~~~~~-~~~~~~~~~l~~~~-~~----g~p~~i~sDnG~~f~ 194 (395)
T 3oym_A 126 DKFFIDYIGPLPPSQGYLYVLVVVDGMTGF-TWLYPTKA-PSTSATVKSLNVLT-SI----AIPKVIHSDQGAAFT 194 (395)
T ss_dssp SEEEEEEECCCSCBTTBCEEEEEEETTTCC-EEEEEESS-SCHHHHHHHHHHHT-TT----CCCSEEEECSCHHHH
T ss_pred eEEEEEEecccCCCCCccEEEEEEecCCce-EEEEEecC-CcHHHHHHHhhHhh-cc----CCceEEEeCCCCcee
Confidence 578888665333336677888888887654 55666654 44444444443332 22 237899999987754
No 16
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=48.76 E-value=7.5 Score=24.30 Aligned_cols=17 Identities=24% Similarity=0.432 Sum_probs=14.1
Q ss_pred cccccccCccccCCCCC
Q 040097 450 ELMTCTCRLWQLSGIPC 466 (516)
Q Consensus 450 ~~~~CsC~~~~~~giPC 466 (516)
....|+|+.|...|.|=
T Consensus 20 ~~~~C~CG~y~~~~kp~ 36 (42)
T 2l0z_A 20 SLGGCRCGKYPNLKKPT 36 (42)
T ss_dssp TTSSBTTTTBCCCCCCC
T ss_pred CCceeccccccCCCCcc
Confidence 35689999999999873
No 17
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=45.97 E-value=78 Score=22.54 Aligned_cols=39 Identities=5% Similarity=0.124 Sum_probs=34.6
Q ss_pred cchhHHHHHHHHHHhhc-C-CccCHHHHHHHHHHHh-CCcch
Q 040097 79 QGRTKWIAAKFLHIWKQ-S-EHREVDKLRNEIATTY-GIKCP 117 (516)
Q Consensus 79 ~~s~~~l~~~~~~~i~~-~-~~~~~~~i~~~l~~~~-g~~~s 117 (516)
.+|-..|...+++.+++ + .+++.++|+..|++.+ |+.++
T Consensus 11 ~Psd~ei~~~I~~IL~~aDL~tvT~K~VR~~Le~~~pg~dLs 52 (70)
T 1q1v_A 11 PPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLT 52 (70)
T ss_dssp CCCHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSSSCCS
T ss_pred CcCHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHccCCCCh
Confidence 67888888999999986 4 6799999999999999 99888
No 18
>1bco_A MUA domain II, bacteriophage MU transposase; polynucleotidyl transferase, DNA binding, endonuclease, integrase; 2.40A {Enterobacteria phage MU} SCOP: b.48.1.1 c.55.3.3 PDB: 1bcm_A
Probab=39.90 E-value=59 Score=30.85 Aligned_cols=71 Identities=15% Similarity=0.105 Sum_probs=49.5
Q ss_pred eEEEEeCeeecCC---CCc---eeEEEEEecCCCCeEEEEEEEeeccccccHHHHHHHHHhccCCCCCCcE--EEEcCCc
Q 040097 194 MLLTVDGWEIDSP---YKS---VMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGL--CIMGDGD 265 (516)
Q Consensus 194 ~vi~~D~t~~~~~---y~~---~l~~~~g~d~~~~~~~la~a~~~~E~~~~~~w~l~~l~~~~~~~~~~~~--~iitD~~ 265 (516)
.++.+|+|+.... .+| ...+.+.+|..... ++|+.+...|+.++....|.......+. |. .|.+|+.
T Consensus 17 ~~w~~D~t~~d~~~~~~~g~~~r~~l~~~iD~~SR~-ivg~~~~~~~~~~~v~~aL~~a~~~~G~----P~~~~i~sDnG 91 (327)
T 1bco_A 17 QWINGDGYLHNVFVRWFNGDVIRPKTWFWQDVKTRK-ILGWRCDVSENIDSIRLSFMDVVTRYGI----PEDFHITIDNT 91 (327)
T ss_dssp TEEEEEEEECSBCEECTTSCEECCEEEEEEETTTCC-EEEEEEESSCCHHHHHHHHHHHHHHHCE----ESSCEEECCCT
T ss_pred cEEEecCCEEEEEEECCCCccceeEEEEEEECCCCc-EEEEEEECCCCHHHHHHHHHHHHHhcCC----CCCcEEEeeCc
Confidence 5888898876432 023 35667778876654 5899998888888877777766555432 55 9999998
Q ss_pred chHH
Q 040097 266 NGID 269 (516)
Q Consensus 266 ~~l~ 269 (516)
.+..
T Consensus 92 ~~f~ 95 (327)
T 1bco_A 92 RGAA 95 (327)
T ss_dssp TSTT
T ss_pred hhhc
Confidence 7654
No 19
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=38.81 E-value=19 Score=19.59 Aligned_cols=17 Identities=29% Similarity=0.589 Sum_probs=15.1
Q ss_pred CceeCCHHHHHHHHHHH
Q 040097 2 GQRFKNDVEFKTALEVN 18 (516)
Q Consensus 2 G~~F~s~~e~~~ai~~y 18 (516)
|.+|.+.+|++.+|..|
T Consensus 9 grtfrnekelrdfiekf 25 (28)
T 1fme_A 9 GRTFRNEKELRDFIEKF 25 (28)
T ss_dssp SCEECCHHHHHHHHHHC
T ss_pred ccccccHHHHHHHHHHh
Confidence 78999999999999764
No 20
>2bw3_A Transposase; DNA recombination, transposition; 2.0A {Musca domestica} SCOP: a.270.1.1 c.55.3.12 PDB: 2bw3_B
Probab=35.94 E-value=1.4e+02 Score=30.24 Aligned_cols=69 Identities=10% Similarity=0.123 Sum_probs=43.6
Q ss_pred eEEEEEEEeec--cccccHHHHHHHHHhccCCCCCCcEEEEcCCcchHHHHHhhhCCCCcccccHHHHHHHHhhh
Q 040097 223 VLPIAFCEVVE--ENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQCCFSLYTKMVDE 295 (516)
Q Consensus 223 ~~~la~a~~~~--E~~~~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l~~Ai~~vfP~a~~~~C~~Hi~~n~~~~ 295 (516)
..+|++.-++. .+.++....+....+..+.....-..++||....+..|++.. .|..|..|.+.-+.+.
T Consensus 131 ~~~L~~~~~~~~~~t~~~i~~~i~~~l~~~~l~~~~~v~~vtDnasn~~~~~~~~----~~i~C~~H~lnLi~~~ 201 (534)
T 2bw3_A 131 DLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSSIKFVTDRGANVVKSLANN----IRINCSSHLLSNVLEN 201 (534)
T ss_dssp EEEEEEEEECGGGCSHHHHHHHHHHHHHTTTCCCCTTCEEEECCCHHHHHHTTTS----EEEECHHHHHHHHHHH
T ss_pred EEEEeEeecCCCCCCHHHHHHHHHHHHHHcCCCcccceeEECCCHHHHHHHHhcC----cccccHHHHHHHHHHH
Confidence 44667766663 444554444444444333321114678999999988887753 5889999998876643
No 21
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=32.16 E-value=1.8e+02 Score=24.39 Aligned_cols=75 Identities=12% Similarity=0.024 Sum_probs=43.3
Q ss_pred CceEEEEeCeeecCCCC-----ceeEEEEEecCCCCeEEEEEEEeeccccccH---HHHHHHHHhccCCCCCCcEEEEcC
Q 040097 192 CRMLLTVDGWEIDSPYK-----SVMLVAVCRDGNDAVLPIAFCEVVEENLDSW---AFFLKNLNYGLRLERGEGLCIMGD 263 (516)
Q Consensus 192 ~~~vi~~D~t~~~~~y~-----~~l~~~~g~d~~~~~~~la~a~~~~E~~~~~---~w~l~~l~~~~~~~~~~~~~iitD 263 (516)
+.-||+.||....|+.. +-..++++.+.......-++.......++.. .-+...+..++.... ++.|.||
T Consensus 6 ~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~~~--~v~I~TD 83 (165)
T 2lsn_A 6 YEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKIPG--PVLVITD 83 (165)
T ss_dssp CSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHSSS--CEEEEES
T ss_pred ceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcCCC--eEEEEeC
Confidence 44589999999988653 3345555555555555555565554444433 223333334443333 6899999
Q ss_pred CcchH
Q 040097 264 GDNGI 268 (516)
Q Consensus 264 ~~~~l 268 (516)
..-.+
T Consensus 84 S~Yvi 88 (165)
T 2lsn_A 84 SFYVA 88 (165)
T ss_dssp CHHHH
T ss_pred hHHHH
Confidence 86543
No 22
>1c6v_A Protein (SIV integrase); DNA integration, DNA binding protein; 3.00A {Simian immunodeficiency virus} SCOP: c.55.3.2
Probab=27.88 E-value=1.3e+02 Score=24.35 Aligned_cols=63 Identities=16% Similarity=0.017 Sum_probs=38.8
Q ss_pred eEEEEeCeeecCCCCceeEEEEEecCCCCeEEEEEEEeeccccccHHHHHHHHHhccCCCCCCcEEEEcCCcchH
Q 040097 194 MLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGI 268 (516)
Q Consensus 194 ~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~a~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l 268 (516)
.++.+|.++. +|. +.++.+|...+ +++++.+- +++.+....++..+.... . |..|.+|+....
T Consensus 10 ~~w~~D~~~~----~g~-~~l~~iD~~Sr-~~~~~~~~-~~~~~~~~~~~~~~~~~~---~--~~~i~sDnG~~f 72 (164)
T 1c6v_A 10 GTWQMDCTHL----EGK-IVIVAVHVASG-FIEAEVIP-QETGRQTALFLLKLAGRW---P--ITHLHTDNGANF 72 (164)
T ss_dssp TEEEEEEEEE----TTE-EEEEEECTTSC-CEEEEECS-SCSHHHHHHHHHHHHTTS---C--CCEEECCCCSST
T ss_pred CEEEEeeccc----CCE-EEEEEEEccCC-EEEEEEcC-CCchHHHHHHHHHHHHhc---C--CCEEEeCCchhh
Confidence 4788998888 333 34444887665 45566544 455555555554444333 2 588999998764
No 23
>3tvz_A Putative uncharacterized protein YHGC; putative monooxygenase, ABM family, ferredoxin fold, monooxy oxidoreductase; 2.00A {Bacillus subtilis subsp}
Probab=25.04 E-value=2.8e+02 Score=23.40 Aligned_cols=84 Identities=8% Similarity=0.039 Sum_probs=53.4
Q ss_pred HHHHHHHHhhCCCcEEEEEecccccccccceeeEeeeccchHHHHhhcCceEEEEeCeeecCCCCce----eEEEEEecC
Q 040097 144 LQYKQEMEIVNSRNIVIIETKSQQQFTADIFHRMFVFLYDTAFVFKTRCRMLLTVDGWEIDSPYKSV----MLVAVCRDG 219 (516)
Q Consensus 144 ~~~~~~l~~~npg~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~vi~~D~t~~~~~y~~~----l~~~~g~d~ 219 (516)
.+|+++|+++||+-....-.+. ...+.+|-|=.+.-+..| ++...|-..
T Consensus 16 ~~~L~~i~~~~~~~~l~l~~~~---------------------------~~~~l~~~t~~~svF~~p~~y~Vl~~~g~~~ 68 (172)
T 3tvz_A 16 ADFLKTIVKKHPSENILLMQGQ---------------------------ENAILIHETSGDTVFQAPHAYEVIDQVGEIK 68 (172)
T ss_dssp HHHHHHHHHHCTTSEEEEEEES---------------------------SCEEEEEEESSCCCSSSCEEEEEEEEESCCS
T ss_pred HHHHHHHHHHCCCCceEEEEcC---------------------------CceEEEEecCCCcccCCCCEEEEEeccCCCC
Confidence 4689999999998555443322 124566655444444444 455556665
Q ss_pred CCCeEEEEEEEeeccccccHHHHHHHHHhccCCCC
Q 040097 220 NDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLER 254 (516)
Q Consensus 220 ~~~~~~la~a~~~~E~~~~~~w~l~~l~~~~~~~~ 254 (516)
+.....++-.-+..+.++.|.-.+......+...+
T Consensus 69 ~~m~~vin~~~V~pg~~~~Fe~~~~~~~~~l~~~p 103 (172)
T 3tvz_A 69 HPGFAVLNNIAVTQEGRPLFENKFKNRAGKVENEP 103 (172)
T ss_dssp CCSEEEEEEEECCGGGHHHHHHHHTSSHHHHTTST
T ss_pred CCcEEEEEEEEcCCCcHHHHHHHHHHhHHHHhcCC
Confidence 66667777777888888888887776655554444
No 24
>3f2k_A Histone-lysine N-methyltransferase setmar; histone-lysine N-methyltransferase setmar, SET domain and mariner transposase fusion; 1.85A {Homo sapiens} PDB: 3k9k_A 3k9j_A
Probab=23.68 E-value=3e+02 Score=24.13 Aligned_cols=61 Identities=10% Similarity=0.092 Sum_probs=36.5
Q ss_pred ecCCCCceeEEEEEecCCCCeEEEEEEEee---ccccccHHHHHHHHHhcc----CCC-CCCcEEEEcCCcc
Q 040097 203 IDSPYKSVMLVAVCRDGNDAVLPIAFCEVV---EENLDSWAFFLKNLNYGL----RLE-RGEGLCIMGDGDN 266 (516)
Q Consensus 203 ~~~~y~~~l~~~~g~d~~~~~~~la~a~~~---~E~~~~~~w~l~~l~~~~----~~~-~~~~~~iitD~~~ 266 (516)
.++.+++.+.+..+.+.+|... +.+++ .-|.+.|.-+|+.+...+ +.. +..+.+++.|..+
T Consensus 65 ~~~~~~~~vmv~~~~s~~G~~~---~~~l~~~~tinse~Y~~~l~~l~~~l~~~~~~~~~~~~~i~~~Dna~ 133 (226)
T 3f2k_A 65 KPILHPKKVMVTIWWSAAGLIH---YSFLNPGETITSEKYAQEIDEMNQKLQRLQLALVNRKGPILLHDNAR 133 (226)
T ss_dssp ----CCCEEEEEEEEETTEEEE---EEECCTTCCCSHHHHHHHHHHHHHHHHHHTC----CCCCEEECCCCH
T ss_pred ccccCCcceEEEEEeecCCcEE---EEEecCCcccCHHHHHHHHHHHHHHHhhhhhHhhccCCcEEEeCCCc
Confidence 3556778889999999988653 44554 456777888877653322 111 0125778889865
No 25
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=22.57 E-value=1e+02 Score=25.93 Aligned_cols=63 Identities=16% Similarity=0.173 Sum_probs=41.3
Q ss_pred eEEEEeCeeecCCCCceeEEEEEecCCCCeEEEEEEEeeccccccHHHHHHHHHhccCCCCCCcEEEEcCCcchHHHHHh
Q 040097 194 MLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVE 273 (516)
Q Consensus 194 ~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~a~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l~~Ai~ 273 (516)
-|++-|+-..+..|+---+ -. +..+.|.-+=+.+.......+ .|-.|+.|+.+|-.+|..
T Consensus 37 mVVf~~g~p~K~~YRrf~I------------------~~-~g~DDya~M~Evl~RR~~r~~-~PDLilIDGGkgQl~aA~ 96 (159)
T 2nrr_A 37 LVVFEDGFPKKGDYRRYKI------------------EQ-DHPDDYESIRTVVKRRYSKHP-LPNLLFVDGGIGQVNAAI 96 (159)
T ss_dssp EEEEETTEECGGGCEEEEC------------------------CHHHHHHHHHHHHHTTSC-CCSEEEESSCHHHHHHHH
T ss_pred EEEEeCCccChhhCceeec------------------CC-CCCCHHHHHHHHHHHHhccCC-CCCEEEEeCCHHHHHHHH
Confidence 4788888888887754311 11 223566666666655543322 478899999999999998
Q ss_pred hhC
Q 040097 274 EFL 276 (516)
Q Consensus 274 ~vf 276 (516)
+++
T Consensus 97 ~vl 99 (159)
T 2nrr_A 97 EAL 99 (159)
T ss_dssp HHH
T ss_pred HHH
Confidence 886
No 26
>2qh9_A UPF0215 protein AF_1433; structural genomics, PSI-2, MCSG, PR structure initiative; 1.80A {Archaeoglobus fulgidus}
Probab=22.38 E-value=3.7e+02 Score=23.01 Aligned_cols=68 Identities=16% Similarity=0.088 Sum_probs=48.2
Q ss_pred eEEEEeCeeecCCCCceeEEEEEecCCCCeEEEEEEEeeccccccHHHHHHHHHhccCCCCCCcEEEEcCCcch
Q 040097 194 MLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNG 267 (516)
Q Consensus 194 ~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~a~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~iitD~~~~ 267 (516)
.|+.+|-.|. . +...++.+-.+ +....=++++.+.-...++..-+++.+.+.-.... +-++|.|++.=
T Consensus 8 rv~GiDds~~--~-~~~~l~gvv~~-~~~v~g~~~~~~~vdG~dat~~i~~~~~~l~~~p~--~~vvllDG~g~ 75 (184)
T 2qh9_A 8 RFLGIDDSFD--D-RKCCVVGCVTC-GGYVEGFLYTEIDIDGLDATDKLISMVRRSKFREQ--IKCIFLPGITL 75 (184)
T ss_dssp EEEEEEEEEC--S-SCEEEEEEEEE-TTEEEEEEEEEECTTCSCHHHHHHHHHTTCTTTTT--EEEEEESSSEE
T ss_pred EEEEEEcccC--C-CceEEEEEEEE-CCEEEEEEEEEEEECChhHHHHHHHHHHhcCCCCC--CcEEEECCEee
Confidence 4899999997 2 44555555556 78888899999998889999877776544322111 58899998764
No 27
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=20.84 E-value=1.4e+02 Score=26.64 Aligned_cols=63 Identities=16% Similarity=0.144 Sum_probs=43.3
Q ss_pred eEEEEeCeeecCCCCceeEEEEEecCCCCeEEEEEEEeeccccccHHHHHHHHHhccCCCCCCcEEEEcCCcchHHHHHh
Q 040097 194 MLLTVDGWEIDSPYKSVMLVAVCRDGNDAVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVE 273 (516)
Q Consensus 194 ~vi~~D~t~~~~~y~~~l~~~~g~d~~~~~~~la~a~~~~E~~~~~~w~l~~l~~~~~~~~~~~~~iitD~~~~l~~Ai~ 273 (516)
-|++-|+-..+..|+--- |-. +..+.|.-+=+.+..+....+ .|-.|+.|+.+|-.+|..
T Consensus 42 mVvf~~g~p~k~~YRrf~------------------i~~-~g~DDya~m~Evl~RR~~r~~-~PDLiliDGGkgQl~~a~ 101 (220)
T 2nrt_A 42 LVVFEDGFPKKGDYRRYK------------------IEQ-DHPDDYESIRTVVKRRYSKHP-LPNLLFVDGGIGQVNAAI 101 (220)
T ss_dssp EEEEETTEECGGGCEEEE------------------EEC-SSCCHHHHHHHHHHHHHTTSC-CCSEEEESSSHHHHHHHH
T ss_pred EEEEeCCccChhhCceee------------------CCC-CCCCHHHHHHHHHHHHhccCC-CCCEEEEeCCHHHHHHHH
Confidence 478888888888775432 112 223666666666666544322 478999999999999998
Q ss_pred hhC
Q 040097 274 EFL 276 (516)
Q Consensus 274 ~vf 276 (516)
+++
T Consensus 102 ~vl 104 (220)
T 2nrt_A 102 EAL 104 (220)
T ss_dssp HHH
T ss_pred HHH
Confidence 886
No 28
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=20.80 E-value=89 Score=24.40 Aligned_cols=27 Identities=7% Similarity=0.116 Sum_probs=22.0
Q ss_pred CCceeCCHHHHHHHHHHHHHHcCceEEEEee
Q 040097 1 MGQRFKNDVEFKTALEVNAIRDGFKLCIIHN 31 (516)
Q Consensus 1 vG~~F~s~~e~~~ai~~ya~~~gf~~~~~rs 31 (516)
|...|+|+|+|. .||.++|..+.+..-
T Consensus 62 v~L~F~skE~Ai----ayAek~G~~y~V~ep 88 (108)
T 2lju_A 62 VCLSFTTRELAI----AYAVAHKIDYTVLQD 88 (108)
T ss_dssp SCEEESSHHHHH----HHHHHTTCEEEEECS
T ss_pred ceEecCCHHHHH----HHHHHcCCEEEEecC
Confidence 457899999885 589999999998753
Done!