BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040099
(1236 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 837 bits (2161), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/1235 (37%), Positives = 704/1235 (57%), Gaps = 58/1235 (4%)
Query: 50 LLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDS------IGQNATK-----TL 98
+ +A LD + MLVGT+AA +G+ +P + L+FGD+ DS + +N+T
Sbjct: 38 MFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKR 97
Query: 99 AIHGVLK---VSKKFVYLALGAGV--ASFFQVACWMITGERQAARIRSFYLETILRQDIA 153
A+ L+ + + Y +GAGV ++ QV+ W + RQ +IR + I+ Q+I
Sbjct: 98 AMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIG 157
Query: 154 FFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLS 213
+FD + GE+ R++ D I + IG+K+G F Q A+F GGF+I F +GW LTL +L+
Sbjct: 158 WFDVH-DVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILA 216
Query: 214 SIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKC 273
P L ++ + K++ + ++ A + A V + + +IRTV +F G+++ YN
Sbjct: 217 ISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNN 276
Query: 274 LVKSYKSSVQEGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLI 333
L ++ + +++ + + +GA+ +I+++Y L WYG L++ K YS G V++V F VLI
Sbjct: 277 LEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLI 336
Query: 334 GSMSLGQASPCLSXXXXXXXXXXXXXXXINRKPEIDLCCVNGKKLDDIRGDIELKDVNFS 393
G+ S+GQASP + I+ KP ID +G K D+I+G++E K+++FS
Sbjct: 337 GAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFS 396
Query: 394 YPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKE 453
YP+R + QIL G L + +G ALVG SG GKST + L+QR YDP G V IDG +++
Sbjct: 397 YPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRT 456
Query: 454 FQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKNLPQGL 513
++++RE IG+VSQEPVL +++I +NI YG+ FI LP
Sbjct: 457 INVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQF 516
Query: 514 DTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINR 573
DT VGE G QLSGGQKQR+AIARA++++P+ILLLDEATSALD+ES +VQ ALD+ R
Sbjct: 517 DTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGR 576
Query: 574 TTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQ---------- 623
TT++++HRLS +RNA++IA G IVE+G H EL+ G Y +L+ Q
Sbjct: 577 TTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREK-GIYFKLVMTQTAGNEIELGN 635
Query: 624 ETCKESEKSAVNNSDSDNQPFASPKITTPKQSET-----ESDFPASEKAKMPPDV---SL 675
E CK K ++N D ++ S I ++ + D S K + DV S
Sbjct: 636 EACKS--KDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPPASF 693
Query: 676 SRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNE--PKEELMRHSKHWAL 733
R+ LNS E P ++G ++ NG + P F V+ + +V P E ++S ++L
Sbjct: 694 WRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSL 753
Query: 734 MFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGAR 793
+F+ LG S +T L + F AG L KR+R M F+ ++ +V WFD+ ++TGA+ R
Sbjct: 754 LFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTR 813
Query: 794 LSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQXXXXXXXXXXXXGITGHIQMK 853
L++DAA V+ G L+++ QN A G++I+ WQ I G ++MK
Sbjct: 814 LANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMK 873
Query: 854 SMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQXXX 913
+ G + + E + ++A++A+ + RTV S E+K +Y + + P + +++
Sbjct: 874 MLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHV 933
Query: 914 XXXXXXXXXXXXXXAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTXXXXXX 973
+YA F GA LV + TF V VF A+ A+ + Q
Sbjct: 934 FGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPD 993
Query: 974 XXXXXXXXXXVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLC 1033
+ +I++ +IDS G + G VQF V F YPTRP I V + L
Sbjct: 994 YAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLS 1053
Query: 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVS 1093
L + G+T+ALVG SG GKSTV+ LL+RFYDP +G + LDG EI++L V+WLR Q+G+VS
Sbjct: 1054 LEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVS 1113
Query: 1094 QEPVLFSDTIRANIA-----------------EMANANGFISGLQEGYDTLVGERGVQLS 1136
QEP+LF +I NIA + AN + FI L + Y+T VG++G QLS
Sbjct: 1114 QEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLS 1173
Query: 1137 GGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTI 1196
GGQKQR+AIARA+V++P ILLLDEATSALD ESE+VVQ+ALD+ RT +V+AHRLSTI
Sbjct: 1174 GGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTI 1233
Query: 1197 KNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLI 1231
+NA LI V+ G + E G+H+ L++ K GIY S++
Sbjct: 1234 QNADLIVVIQNGKVKEHGTHQQLLAQK-GIYFSMV 1267
Score = 365 bits (938), Expect = e-101, Method: Compositional matrix adjust.
Identities = 211/599 (35%), Positives = 320/599 (53%), Gaps = 37/599 (6%)
Query: 671 PDVS-LSRLAYLNSPEVPALLLGAIASMTNGIIIP----IFGVMLAAMVNTLNEPKE--- 722
P VS L+ Y + +L+G +A++ +G+ +P IFG M + + N K
Sbjct: 31 PAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTN 90
Query: 723 -----------ELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEK 771
+L +A + +GA L+ + + + + +A + I +IR F
Sbjct: 91 MSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHA 150
Query: 772 VVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACW 831
++ E+GWFD H G + RL+ D + + +GD + + Q AT G +I F W
Sbjct: 151 IMNQEIGWFDV--HDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGW 208
Query: 832 QXXXXXXXXXXXXGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEK 891
+ G++ I K + F+ + Y +A VA + +++IRTV +F ++K
Sbjct: 209 KLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKK 268
Query: 892 VMKLYKKKCEGPIKAGIRQXXXXXXXXXXXXXXXXXAYAVTFYVGAKLVDHKQATFTEVF 951
++ Y E + GI++ +YA+ F+ G LV K+ + +V
Sbjct: 269 ELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVL 328
Query: 952 RVFFALSMTAIGISQTXXXXXXXXXXXXXXXXVFGLIDQVSKIDSSEYTGRTLENVMGEV 1011
VFF++ + A + Q VF +ID IDS +G +N+ G +
Sbjct: 329 TVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNL 388
Query: 1012 QFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHIT 1071
+F + F YP+R +++ + L L + G+T+ALVG SG GKST + L+QR YDP G ++
Sbjct: 389 EFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVS 448
Query: 1072 LDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI---------------AEMANANGF 1116
+DG +I+ + V++LR+ +GVVSQEPVLF+ TI NI + ANA F
Sbjct: 449 IDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDF 508
Query: 1117 ISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDA 1176
I L +DTLVGERG QLSGGQKQR+AIARA+V+ PKILLLDEATSALD ESE VVQ A
Sbjct: 509 IMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAA 568
Query: 1177 LDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPHT 1235
LD+ RTT+V+AHRLST++NA +IA G+IVE+G+H+ L+ K GIY L+ T
Sbjct: 569 LDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREK-GIYFKLVMTQT 626
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 836 bits (2160), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/1235 (37%), Positives = 704/1235 (57%), Gaps = 58/1235 (4%)
Query: 50 LLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDS------IGQNATK-----TL 98
+ +A LD + MLVGT+AA +G+ +P + L+FGD+ DS + +N+T
Sbjct: 38 MFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKR 97
Query: 99 AIHGVLK---VSKKFVYLALGAGV--ASFFQVACWMITGERQAARIRSFYLETILRQDIA 153
A+ L+ + + Y +GAGV ++ QV+ W + RQ +IR + I+ Q+I
Sbjct: 98 AMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIG 157
Query: 154 FFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLS 213
+FD + GE+ R++ D I + IG+K+G F Q A+F GGF+I F +GW LTL +L+
Sbjct: 158 WFDVH-DVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILA 216
Query: 214 SIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKC 273
P L ++ + K++ + ++ A + A V + + +IRTV +F G+++ YN
Sbjct: 217 ISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNN 276
Query: 274 LVKSYKSSVQEGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLI 333
L ++ + +++ + + +GA+ +I+++Y L WYG L++ K YS G V++V F VLI
Sbjct: 277 LEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLI 336
Query: 334 GSMSLGQASPCLSXXXXXXXXXXXXXXXINRKPEIDLCCVNGKKLDDIRGDIELKDVNFS 393
G+ S+GQASP + I+ KP ID +G K D+I+G++E K+++FS
Sbjct: 337 GAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFS 396
Query: 394 YPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKE 453
YP+R + QIL G L + +G ALVG SG GKST + L+QR YDP G V IDG +++
Sbjct: 397 YPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRT 456
Query: 454 FQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKNLPQGL 513
++++RE IG+VSQEPVL +++I +NI YG+ FI LP
Sbjct: 457 INVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQF 516
Query: 514 DTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINR 573
DT VGE G QLSGGQKQR+AIARA++++P+ILLLDEATSALD+ES +VQ ALD+ R
Sbjct: 517 DTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGR 576
Query: 574 TTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQ---------- 623
TT++++HRLS +RNA++IA G IVE+G H EL+ G Y +L+ Q
Sbjct: 577 TTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREK-GIYFKLVMTQTAGNEIELGN 635
Query: 624 ETCKESEKSAVNNSDSDNQPFASPKITTPKQSET-----ESDFPASEKAKMPPDV---SL 675
E CK K ++N D ++ S I ++ + D S K + DV S
Sbjct: 636 EACKS--KDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPPASF 693
Query: 676 SRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNE--PKEELMRHSKHWAL 733
R+ LNS E P ++G ++ NG + P F V+ + +V P E ++S ++L
Sbjct: 694 WRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSL 753
Query: 734 MFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGAR 793
+F+ LG S +T L + F AG L KR+R M F+ ++ +V WFD+ ++TGA+ R
Sbjct: 754 LFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTR 813
Query: 794 LSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQXXXXXXXXXXXXGITGHIQMK 853
L++DAA V+ G L+++ QN A G++I+ WQ I G ++MK
Sbjct: 814 LANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMK 873
Query: 854 SMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQXXX 913
+ G + + E + ++A++A+ + RTV S E+K +Y + + P + +++
Sbjct: 874 MLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHV 933
Query: 914 XXXXXXXXXXXXXXAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTXXXXXX 973
+YA F GA LV + TF V VF A+ A+ + Q
Sbjct: 934 FGITFSFTQAMMYFSYAACFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPD 993
Query: 974 XXXXXXXXXXVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLC 1033
+ +I++ +IDS G + G VQF V F YPTRP I V + L
Sbjct: 994 YAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLS 1053
Query: 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVS 1093
L + G+T+ALVG SG GKSTV+ LL+RFYDP +G + LDG EI++L V+WLR Q+G+VS
Sbjct: 1054 LEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVS 1113
Query: 1094 QEPVLFSDTIRANIA-----------------EMANANGFISGLQEGYDTLVGERGVQLS 1136
QEP+LF +I NIA + AN + FI L + Y+T VG++G QLS
Sbjct: 1114 QEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLS 1173
Query: 1137 GGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTI 1196
GGQKQR+AIARA+V++P ILLLDEATSALD ESE+VVQ+ALD+ RT +V+AHRLSTI
Sbjct: 1174 GGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTI 1233
Query: 1197 KNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLI 1231
+NA LI V+ G + E G+H+ L++ K GIY S++
Sbjct: 1234 QNADLIVVIQNGKVKEHGTHQQLLAQK-GIYFSMV 1267
Score = 365 bits (938), Expect = e-101, Method: Compositional matrix adjust.
Identities = 211/599 (35%), Positives = 320/599 (53%), Gaps = 37/599 (6%)
Query: 671 PDVS-LSRLAYLNSPEVPALLLGAIASMTNGIIIP----IFGVMLAAMVNTLNEPKE--- 722
P VS L+ Y + +L+G +A++ +G+ +P IFG M + + N K
Sbjct: 31 PAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTN 90
Query: 723 -----------ELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEK 771
+L +A + +GA L+ + + + + +A + I +IR F
Sbjct: 91 MSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHA 150
Query: 772 VVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACW 831
++ E+GWFD H G + RL+ D + + +GD + + Q AT G +I F W
Sbjct: 151 IMNQEIGWFDV--HDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGW 208
Query: 832 QXXXXXXXXXXXXGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEK 891
+ G++ I K + F+ + Y +A VA + +++IRTV +F ++K
Sbjct: 209 KLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKK 268
Query: 892 VMKLYKKKCEGPIKAGIRQXXXXXXXXXXXXXXXXXAYAVTFYVGAKLVDHKQATFTEVF 951
++ Y E + GI++ +YA+ F+ G LV K+ + +V
Sbjct: 269 ELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVL 328
Query: 952 RVFFALSMTAIGISQTXXXXXXXXXXXXXXXXVFGLIDQVSKIDSSEYTGRTLENVMGEV 1011
VFF++ + A + Q VF +ID IDS +G +N+ G +
Sbjct: 329 TVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNL 388
Query: 1012 QFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHIT 1071
+F + F YP+R +++ + L L + G+T+ALVG SG GKST + L+QR YDP G ++
Sbjct: 389 EFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVS 448
Query: 1072 LDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI---------------AEMANANGF 1116
+DG +I+ + V++LR+ +GVVSQEPVLF+ TI NI + ANA F
Sbjct: 449 IDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDF 508
Query: 1117 ISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDA 1176
I L +DTLVGERG QLSGGQKQR+AIARA+V+ PKILLLDEATSALD ESE VVQ A
Sbjct: 509 IMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAA 568
Query: 1177 LDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPHT 1235
LD+ RTT+V+AHRLST++NA +IA G+IVE+G+H+ L+ K GIY L+ T
Sbjct: 569 LDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREK-GIYFKLVMTQT 626
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/1267 (33%), Positives = 667/1267 (52%), Gaps = 75/1267 (5%)
Query: 41 VNGRIPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSI---------- 90
V ++ +L + L+ +L+ +GT+ A G +P +++L G + +
Sbjct: 56 VVNKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNN 115
Query: 91 -------GQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFY 143
GQN TKT H V+ V + + +G A V C++ E+ R+R +
Sbjct: 116 GSTFLPTGQNYTKTDFEHDVMNVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREF 175
Query: 144 LETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFK 203
+++ILRQ+I++FD ++G + ++ + +++ G+K+G Q+ + FI GF++AF
Sbjct: 176 VKSILRQEISWFDTN-HSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTH 234
Query: 204 GWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGE 263
W LTL ML+ P + G + K + A ++ + A VV +TI SIRTV S G
Sbjct: 235 SWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGL 294
Query: 264 QQASSIYNKCLVKSYKSSVQEGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGD 323
+ Y+ + ++ K+ V +GL G+ GA F ++ L + G + + + GD
Sbjct: 295 RYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGD 354
Query: 324 VMSVIFGVLIGSMSLGQASPCLSXXXXXXXXXXXXXXXINRKPEIDLCCVNGKKLDDIRG 383
+++ V++GSM+LG A P L+ ++RKP ID G+K I+G
Sbjct: 355 MLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKG 414
Query: 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443
DI +++V+F+YP+RPD IL G L + G ALVG+SG GKST+ISL+ R+YD G+
Sbjct: 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGK 474
Query: 444 VLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXS 503
+ IDGV++++ L+++R+ + +VSQEP L + +I +NI+ GK
Sbjct: 475 ITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAE 534
Query: 504 HFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQ 563
FIK LP G +T VG+ G QLSGGQKQR+AIARA++++P+ILLLDEATSALD+ES +VQ
Sbjct: 535 KFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQ 594
Query: 564 EALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQ 623
+ALD+ RTT+I++HRLS IRNA++I + G++VE G H L+ G Y L+ Q
Sbjct: 595 QALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQ-GLYYDLVTAQ 653
Query: 624 ETC---------KESEKSAVNNSDSDNQPFASP-----------------KITT-PKQSE 656
K S +++V S+++ + IT P E
Sbjct: 654 TFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPVIDE 713
Query: 657 TESDFPASEKAKMPPDV--------SLSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGV 708
E +++ ++ +L + Y P +L +G + G I P + V
Sbjct: 714 KEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSV 773
Query: 709 MLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMC 768
+ +N + + WALMF+ L AA + S L + +A L + +R+
Sbjct: 774 FFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKL 833
Query: 769 FEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFK 828
F V+ +G+FD +++G I RL++D +R+ + S ++ + V G+ +AF
Sbjct: 834 FRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFF 893
Query: 829 ACWQXXXXXXXXXXXXGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCA 888
WQ +++ + G + + + + ++ ++A +A+ ++RTV +
Sbjct: 894 YGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAR 953
Query: 889 EEKVMKLYKKKCEGPIKAGIRQXXXXXXXXXXXXXXXXXAYAVTFYVGAKLV--DHKQAT 946
E+ + + +K + P K I++ + +G L+ D
Sbjct: 954 EDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQ 1013
Query: 947 FTEVFRVFFALSMTAIGISQTXXXXXXXXXXXXXXXXVFGLIDQVSKIDSSEYTGRTLEN 1006
V RV +A++++ + +FG++ ++SKIDS G +
Sbjct: 1014 PMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGEK-KK 1072
Query: 1007 VMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPS 1066
+ G+V F V F YP RP IE+ + L ++ PG+T+ALVG SG GKSTV++LL+RFYD
Sbjct: 1073 LYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL 1132
Query: 1067 SGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI-----------------AE 1109
G I +DG EI+ L + R Q+ +VSQEP LF +I NI A
Sbjct: 1133 GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAAR 1192
Query: 1110 MANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIES 1169
+AN + FI+ L EG++T VG+RG QLSGGQKQR+AIARA+V+ PKILLLDEATSALD ES
Sbjct: 1193 LANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 1252
Query: 1170 ERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTS 1229
E+VVQ+ALD+ RT +V+AHRL+T+ NA IAVVS G I+EKG+H L+S K G Y
Sbjct: 1253 EKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEK-GAYYK 1311
Query: 1230 LIEPHTT 1236
L + T
Sbjct: 1312 LTQKQMT 1318
Score = 299 bits (765), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 191/575 (33%), Positives = 296/575 (51%), Gaps = 15/575 (2%)
Query: 62 MLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVAS 121
+ +G AT G P ++ F M+ N L+ + F+ LA G+ S
Sbjct: 754 LFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWAL--MFLVLAAAQGICS 811
Query: 122 FFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEIN-TGEVVGRISGDTLLIQDAIG 180
F I E +R+ +L Q I FFD N +G++ R++ D ++ AI
Sbjct: 812 FLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAID 871
Query: 181 EKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVVMI--KLVG-NLASQKQ 237
+ I S + G +AFF GW + L +++ I P+V G + + G N+ S +
Sbjct: 872 FRFSTVITTLVSMVAGIGLAFFYGWQMALLIIA-ILPIVAFGQYLRGRRFTGKNVKSASE 930
Query: 238 AADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGLATGLGLGASVF 297
ADS + + I ++RTV + E + + L +K +++E GL G +
Sbjct: 931 FADS--GKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASS 988
Query: 298 IIFSAYGLGVWYGAKLILEK--GYSGGDVMSVIFGVLIGSMSLGQASPCLSXXXXXXXXX 355
+++ G LI+ V+ V++ + I + +LG A+
Sbjct: 989 VLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAG 1048
Query: 356 XXXXXXINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTI 415
+ + +ID + G+K + G + K+V F+YP RP+ +IL G + G
Sbjct: 1049 GIIFGMLRKISKIDSLSLAGEK-KKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQT 1107
Query: 416 AALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSS 475
ALVG SG GKSTV++L++RFYD GE+ IDG +K + R +I +VSQEP L
Sbjct: 1108 LALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC 1167
Query: 476 SIRDNIAYG--KTHXXXXXXXXXXXXXXXSHFIKNLPQGLDTNVGEHGIQLSGGQKQRVA 533
SI +NI YG + +FI LP+G +T VG+ G QLSGGQKQR+A
Sbjct: 1168 SIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIA 1227
Query: 534 IARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAV 593
IARA++++P+ILLLDEATSALD+ES ++VQEALDR RT ++++HRL+ + NA+ IAV
Sbjct: 1228 IARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAV 1287
Query: 594 IQQGKIVEKGTHSELLENPYGAYNRLIRLQETCKE 628
+ G I+EKGTH++L+ GAY +L + Q T K+
Sbjct: 1288 VSNGTIIEKGTHTQLMSEK-GAYYKLTQKQMTEKK 1321
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 336 bits (862), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 206/576 (35%), Positives = 313/576 (54%), Gaps = 38/576 (6%)
Query: 74 LCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALG-------AGVASFFQVA 126
+ PF G ++D I N T + S L LG A+ +V
Sbjct: 36 MSAPF---FLGKIIDVIYTNPT--------VDYSDNLTRLCLGLSAVFLCGAAANAIRVY 84
Query: 127 CWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKF 186
+G+R R+R+ +ILRQ++AFFDK TGE++ R+S DT L+ ++ E +
Sbjct: 85 LMQTSGQRIVNRLRTSLFSSILRQEVAFFDK-TRTGELINRLSSDTALLGRSVTENLSDG 143
Query: 187 IQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATV 246
++ GA G + FF L +LS +PP+ I V+ + + L Q + + A +
Sbjct: 144 LRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQL 203
Query: 247 VAQTIGSIRTVASFTGE-----QQASSIYNKCLVKSYKSSVQEGLATGLGLGASVFIIFS 301
+ IG++RTV +F E + AS + + + ++ + G GL ++ ++
Sbjct: 204 AEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSV 263
Query: 302 AYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSXXXXXXXXXXXXXXX 361
Y G+ G+ + + G++ S + +S+G S S
Sbjct: 264 LYKGGLLMGSAHM-----TVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWEL 318
Query: 362 INRKPEIDL---CCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAAL 418
+ R+P++ +N K +G +E K+V+F+YPARP+ I F L IP+G++ AL
Sbjct: 319 LEREPKLPFNEGVILNEKSF---QGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTAL 375
Query: 419 VGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIR 478
VG SGSGKSTV+SL+ R YDP +G + +DG ++++ W+R KIG VSQEP+L S SI
Sbjct: 376 VGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIA 435
Query: 479 DNIAYGKTHXXXXXXXXXXXXXXXSH---FIKNLPQGLDTNVGEHGIQLSGGQKQRVAIA 535
+NIAYG ++ FI+N PQG +T VGE G+ LSGGQKQR+AIA
Sbjct: 436 ENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIA 495
Query: 536 RAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQ 595
RA++K+P+ILLLDEATSALD+E+ +VQEALDR+M RT ++++HRLS I+NAN++AV+
Sbjct: 496 RALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLD 555
Query: 596 QGKIVEKGTHSELLENPYGAYNRLIRLQETCKESEK 631
QGKI E G H ELL P G Y +L+ Q +E
Sbjct: 556 QGKITEYGKHEELLSKPNGIYRKLMNKQSFISAAEN 591
Score = 311 bits (798), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 187/515 (36%), Positives = 278/515 (53%), Gaps = 23/515 (4%)
Query: 739 GAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDA 798
GAA+ + + +Y +G +++ R+R+ F ++ EV +FD+ TG + RLSSD
Sbjct: 75 GAAA---NAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKT--RTGELINRLSSDT 129
Query: 799 ALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQXXXXXXXXXXXXGITGHIQMKSMKGF 858
AL+ V + LS ++ A A VG+ + F I I + ++
Sbjct: 130 ALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKL 189
Query: 859 SANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQXXXXXXXX 918
+ ++ +A+Q+A + + ++RTV +F E ++ Y K + ++ ++
Sbjct: 190 TKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFF 249
Query: 919 XXXXXXXXXAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTXXXXXXXXXXX 978
Y G L+ T E+ I I
Sbjct: 250 GATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGL 309
Query: 979 XXXXXVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPP 1038
++ L+++ K+ +E ++ G ++F V F YP RP + +F+D L+IP
Sbjct: 310 GAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPS 369
Query: 1039 GKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVL 1098
G ALVG SGSGKSTV+SLL R YDP+SG I+LDG +I++L WLR ++G VSQEP+L
Sbjct: 370 GSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPIL 429
Query: 1099 FSDTIRANIA------------------EMANANGFISGLQEGYDTLVGERGVQLSGGQK 1140
FS +I NIA E+ANA FI +G++T+VGE+GV LSGGQK
Sbjct: 430 FSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQK 489
Query: 1141 QRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAH 1200
QR+AIARA++K PKILLLDEATSALD E+E +VQ+ALD++M RT LV+AHRLSTIKNA+
Sbjct: 490 QRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNAN 549
Query: 1201 LIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPHT 1235
++AV+ QG I E G HE L+S NGIY L+ +
Sbjct: 550 MVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQS 584
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 333 bits (853), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 204/568 (35%), Positives = 310/568 (54%), Gaps = 38/568 (6%)
Query: 74 LCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALG-------AGVASFFQVA 126
+ PF G ++D I N T + S L LG A+ +V
Sbjct: 67 MSAPF---FLGKIIDVIYTNPT--------VDYSDNLTRLCLGLSAVFLCGAAANAIRVY 115
Query: 127 CWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKF 186
+G+R R+R+ +ILRQ++AFFDK TGE++ R+S DT L+ ++ E +
Sbjct: 116 LMQTSGQRIVNRLRTSLFSSILRQEVAFFDK-TRTGELINRLSSDTALLGRSVTENLSDG 174
Query: 187 IQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATV 246
++ GA G + FF L +LS +PP+ I V+ + + L Q + + A +
Sbjct: 175 LRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQL 234
Query: 247 VAQTIGSIRTVASFTGE-----QQASSIYNKCLVKSYKSSVQEGLATGLGLGASVFIIFS 301
+ IG++RTV +F E + AS + + + ++ + G GL ++ ++
Sbjct: 235 AEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSV 294
Query: 302 AYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSXXXXXXXXXXXXXXX 361
Y G+ G+ + + G++ S + +S+G S S
Sbjct: 295 LYKGGLLMGSAHM-----TVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWEL 349
Query: 362 INRKPEIDL---CCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAAL 418
+ R+P++ +N K +G +E K+V+F+YPARP+ I F L IP+G++ AL
Sbjct: 350 LEREPKLPFNEGVILNEKSF---QGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTAL 406
Query: 419 VGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIR 478
VG SGSGKSTV+SL+ R YDP +G + +DG ++++ W+R KIG VSQEP+L S SI
Sbjct: 407 VGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIA 466
Query: 479 DNIAYGKTHXXXXXXXXXXXXXXXSH---FIKNLPQGLDTNVGEHGIQLSGGQKQRVAIA 535
+NIAYG ++ FI+N PQG +T VGE G+ LSGGQKQR+AIA
Sbjct: 467 ENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIA 526
Query: 536 RAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQ 595
RA++K+P+ILLLDEATSALD+E+ +VQEALDR+M RT ++++H LS I+NAN++AV+
Sbjct: 527 RALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAVLD 586
Query: 596 QGKIVEKGTHSELLENPYGAYNRLIRLQ 623
QGKI E G H ELL P G Y +L+ Q
Sbjct: 587 QGKITEYGKHEELLSKPNGIYRKLMNKQ 614
Score = 309 bits (792), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 183/506 (36%), Positives = 272/506 (53%), Gaps = 20/506 (3%)
Query: 748 LSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGD 807
+ +Y +G +++ R+R+ F ++ EV +FD+ TG + RLSSD AL+ V +
Sbjct: 112 IRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKT--RTGELINRLSSDTALLGRSVTE 169
Query: 808 TLSLLVQNTATAVVGLVIAFKACWQXXXXXXXXXXXXGITGHIQMKSMKGFSANAENMYE 867
LS ++ A A VG+ + F I I + ++ + ++
Sbjct: 170 NLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLA 229
Query: 868 EASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQXXXXXXXXXXXXXXXXX 927
+A+Q+A + + ++RTV +F E ++ Y K + ++ ++
Sbjct: 230 QATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNL 289
Query: 928 AYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTXXXXXXXXXXXXXXXXVFGL 987
Y G L+ T E+ I I ++ L
Sbjct: 290 IVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWEL 349
Query: 988 IDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGE 1047
+++ K+ +E ++ G ++F V F YP RP + +F+D L+IP G ALVG
Sbjct: 350 LEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGP 409
Query: 1048 SGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI 1107
SGSGKSTV+SLL R YDP+SG I+LDG +I++L WLR ++G VSQEP+LFS +I NI
Sbjct: 410 SGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENI 469
Query: 1108 A------------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAI 1149
A E+ANA FI +G++T+VGE+GV LSGGQKQR+AIARA+
Sbjct: 470 AYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARAL 529
Query: 1150 VKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGM 1209
+K PKILLLDEATSALD E+E +VQ+ALD++M RT LV+AH LSTIKNA+++AV+ QG
Sbjct: 530 LKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGK 589
Query: 1210 IVEKGSHESLISTKNGIYTSLIEPHT 1235
I E G HE L+S NGIY L+ +
Sbjct: 590 ITEYGKHEELLSKPNGIYRKLMNKQS 615
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 260 bits (665), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 169/506 (33%), Positives = 259/506 (51%), Gaps = 29/506 (5%)
Query: 744 LTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRS 803
+TS +S YC + K++ +R F ++ M V +FD+ STG + +R++ D+ V S
Sbjct: 80 ITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK--QSTGTLLSRITYDSEQVAS 137
Query: 804 LVGDTLSLLVQNTATAVVGLVIAFKACWQXXXXXXXXXXXXGITGHIQMKSMKGFSANAE 863
L +V+ A+ + ++ F WQ I + K + S N +
Sbjct: 138 SSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQ 197
Query: 864 NMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQXXXXXXXXXXXXX 923
N + + A + + V F +E K + K G++
Sbjct: 198 NTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQL 257
Query: 924 XXXXAYAVTFYVGA--KLVDHKQA-TFTEVFRVFFALSMTAIGISQTXXXXXXXXXXXXX 980
A A Y + ++D A T T VF AL ++
Sbjct: 258 IASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQT 317
Query: 981 XXXVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGK 1040
+F ++D + D + R ++ G+++F V+F YP R + R++ L IP GK
Sbjct: 318 ---LFAILDSEQEKDEGK---RVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGK 370
Query: 1041 TIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFS 1100
T+ALVG SGSGKST+ SL+ RFYD GHI +DG ++++ + LR Q+ +VSQ LF+
Sbjct: 371 TVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFN 430
Query: 1101 DTIRANIA----------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVA 1144
DT+ NIA MA A FI+ + G DT++GE GV LSGGQ+QR+A
Sbjct: 431 DTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIA 490
Query: 1145 IARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAV 1204
IARA++++ IL+LDEATSALD ESER +Q ALD++ +RT+LV+AHRLSTI+ A I V
Sbjct: 491 IARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVV 550
Query: 1205 VSQGMIVEKGSHESLISTKNGIYTSL 1230
V G+IVE+G+H L++ ++G+Y L
Sbjct: 551 VEDGIIVERGTHSELLA-QHGVYAQL 575
Score = 254 bits (649), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 182/573 (31%), Positives = 295/573 (51%), Gaps = 27/573 (4%)
Query: 66 TIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVY--------LALGA 117
TIA GL V +AL+ D+ + K L G K + + L +
Sbjct: 19 TIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILR 78
Query: 118 GVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQD 177
G+ S+ C + +R ++ +AFFDK+ +TG ++ RI+ D+ +
Sbjct: 79 GITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ-STGTLLSRITYDSEQVAS 137
Query: 178 AIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQ 237
+ + ++ GAS IG F++ F+ W L++ ++ P + IA V+ K +++ Q
Sbjct: 138 SSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQ 197
Query: 238 AADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQ-EGLATGLGLGASV 296
T Q + + V F G++ + ++K S K +Q + + + +
Sbjct: 198 NTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKV---SNKMRLQGMKMVSASSISDPI 254
Query: 297 FIIFSAYGLG-VWYGAKL--ILEKGYSGGDVMSVIFGVLIGSMS-LGQASPCLSXXXXXX 352
+ ++ L V Y A +++ +G ++V+F +I M L + +
Sbjct: 255 IQLIASLALAFVLYAASFPSVMDSLTAG--TITVVFSSMIALMRPLKSLTNVNAQFQRGM 312
Query: 353 XXXXXXXXXINRKPEIDLCCVNGKK-LDDIRGDIELKDVNFSYPARPDEQILNGFCLLIP 411
++ + E D GK+ +D GD+E ++V F+YP R + L L IP
Sbjct: 313 AACQTLFAILDSEQEKD----EGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIP 367
Query: 412 NGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPV 471
G ALVG SGSGKST+ SLI RFYD G +L+DG +L+E+ L +R ++ LVSQ
Sbjct: 368 AGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVH 427
Query: 472 LLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXS-HFIKNLPQGLDTNVGEHGIQLSGGQKQ 530
L + ++ +NIAY +T + FI + GLDT +GE+G+ LSGGQ+Q
Sbjct: 428 LFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQ 487
Query: 531 RVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANI 590
R+AIARA+++D IL+LDEATSALD+ES R +Q ALD + NRT+++++HRLS I A+
Sbjct: 488 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADE 547
Query: 591 IAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQ 623
I V++ G IVE+GTHSELL +G Y +L ++Q
Sbjct: 548 IVVVEDGIIVERGTHSELLAQ-HGVYAQLHKMQ 579
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 256 bits (654), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 183/573 (31%), Positives = 298/573 (52%), Gaps = 27/573 (4%)
Query: 66 TIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKK-FVYLALGA------- 117
TIA GL V VAL+ D+ + K L G K + V++ L
Sbjct: 19 TIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKTDRSVLVWMPLVVIGLMILR 78
Query: 118 GVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQD 177
G+ S+ C + +R ++ ++FFDK+ +TG ++ RI+ D+ +
Sbjct: 79 GITSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQ-STGTLLSRITYDSEQVAS 137
Query: 178 AIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQ 237
+ + ++ GAS IG F++ F+ W L++ ++ P + IA V+ K N++ Q
Sbjct: 138 SSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVVSKRFRNISKNMQ 197
Query: 238 AADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQ-EGLATGLGLGASV 296
T Q + + V F G++ + ++K S + +Q + + + +
Sbjct: 198 NTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKV---SNRMRLQGMKMVSASSISDPI 254
Query: 297 FIIFSAYGLG-VWYGAKL--ILEKGYSGGDVMSVIFGVLIGSMS-LGQASPCLSXXXXXX 352
+ ++ L V Y A +++ +G ++V+F +I M L + +
Sbjct: 255 IQLIASLALAFVLYAASFPSVMDSLTAG--TITVVFSSMIALMRPLKSLTNVNAQFQRGM 312
Query: 353 XXXXXXXXXINRKPEIDLCCVNGKK-LDDIRGDIELKDVNFSYPARPDEQILNGFCLLIP 411
++ + E D GK+ ++ GD+E ++V F+YP R D L L IP
Sbjct: 313 AACQTLFTILDSEQEKD----EGKRVIERATGDVEFRNVTFTYPGR-DVPALRNINLKIP 367
Query: 412 NGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPV 471
G ALVG SGSGKST+ SLI RFYD GE+L+DG +L+E+ L +R ++ LVSQ
Sbjct: 368 AGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVH 427
Query: 472 LLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXS-HFIKNLPQGLDTNVGEHGIQLSGGQKQ 530
L + ++ +NIAY +T + FI + GLDT +GE+G+ LSGGQ+Q
Sbjct: 428 LFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQ 487
Query: 531 RVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANI 590
R+AIARA+++D IL+LDEATSALD+ES R +Q ALD + NRT+++++HRLS I A+
Sbjct: 488 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADE 547
Query: 591 IAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQ 623
I V++ G IVE+GTH++LLE+ G Y +L ++Q
Sbjct: 548 IVVVEDGVIVERGTHNDLLEH-RGVYAQLHKMQ 579
Score = 256 bits (654), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 170/506 (33%), Positives = 256/506 (50%), Gaps = 29/506 (5%)
Query: 744 LTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRS 803
+TS +S YC + K++ +R F ++ M V +FD+ STG + +R++ D+ V S
Sbjct: 80 ITSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDK--QSTGTLLSRITYDSEQVAS 137
Query: 804 LVGDTLSLLVQNTATAVVGLVIAFKACWQXXXXXXXXXXXXGITGHIQMKSMKGFSANAE 863
L +V+ A+ + ++ F WQ I + K + S N +
Sbjct: 138 SSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVVSKRFRNISKNMQ 197
Query: 864 NMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQXXXXXXXXXXXXX 923
N + + A + + V F +E K + K G++
Sbjct: 198 NTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQGMKMVSASSISDPIIQL 257
Query: 924 XXXXAYAVTFYVGA--KLVDHKQA-TFTEVFRVFFALSMTAIGISQTXXXXXXXXXXXXX 980
A A Y + ++D A T T VF AL ++
Sbjct: 258 IASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQT 317
Query: 981 XXXVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGK 1040
+F ++D + D + R +E G+V+F V+F YP R + R++ L IP GK
Sbjct: 318 ---LFTILDSEQEKDEGK---RVIERATGDVEFRNVTFTYPGR-DVPALRNINLKIPAGK 370
Query: 1041 TIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFS 1100
T+ALVG SGSGKST+ SL+ RFYD G I +DG ++++ + LR Q+ +VSQ LF+
Sbjct: 371 TVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFN 430
Query: 1101 DTIRANIA----------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVA 1144
DT+ NIA MA A FI+ + G DT++GE GV LSGGQ+QR+A
Sbjct: 431 DTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIA 490
Query: 1145 IARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAV 1204
IARA++++ IL+LDEATSALD ESER +Q ALD++ +RT+LV+AHRLSTI+ A I V
Sbjct: 491 IARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVV 550
Query: 1205 VSQGMIVEKGSHESLISTKNGIYTSL 1230
V G+IVE+G+H L+ + G+Y L
Sbjct: 551 VEDGVIVERGTHNDLLEHR-GVYAQL 575
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 241 bits (616), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 173/582 (29%), Positives = 292/582 (50%), Gaps = 20/582 (3%)
Query: 47 FHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDS-IGQNATKTLAIHGVLK 105
F +L ++ L + L +V TIA N ++ L L+D G + L I +
Sbjct: 13 FKRLWTYIRLYKAGL-VVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMI 71
Query: 106 VSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVV 165
+ FV G++ F C ++R + + FFD+E +TG ++
Sbjct: 72 LGLMFV-----RGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQE-STGGLL 125
Query: 166 GRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVVM 225
RI+ D+ + A + ++ GAS IG + F+ W L+L ++ P + A +
Sbjct: 126 SRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFV 185
Query: 226 IKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEG 285
K ++ Q A + Q + + V S+ G++ ++K + +++
Sbjct: 186 SKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMK-- 243
Query: 286 LATGLGLGASVFIIFSAYGL-GVWYGAKLILEKGYSGGDVMSVIFGVLIGSMS-LGQASP 343
L + + V + ++ L V + A + + +V+F + G M L +
Sbjct: 244 LVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTS 303
Query: 344 CLSXXXXXXXXXXXXXXXINRKPEIDLCCVNGK-KLDDIRGDIELKDVNFSYPARPDEQI 402
S ++ + E D NGK + + + G++++KDV F+Y + ++
Sbjct: 304 VTSEFQRGMAACQTLFGLMDLETERD----NGKYEAERVNGEVDVKDVTFTYQGK-EKPA 358
Query: 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462
L+ IP G ALVG SGSGKST+ +L RFYD +G + +DG ++++++L +R
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418
Query: 463 IGLVSQEPVLLSSSIRDNIAYG-KTHXXXXXXXXXXXXXXXSHFIKNLPQGLDTNVGEHG 521
LVSQ L + +I +NIAY + FI+N+PQGLDT +GE+G
Sbjct: 419 FALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENG 478
Query: 522 IQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHR 581
LSGGQ+QRVAIARA+++D +L+LDEATSALD+ES R +Q ALD + N+T ++++HR
Sbjct: 479 TSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHR 538
Query: 582 LSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQ 623
LS I A+ I V+ +G+I+E+G H++LL GAY +L R+Q
Sbjct: 539 LSTIEQADEILVVDEGEIIERGRHADLLAQD-GAYAQLHRIQ 579
Score = 233 bits (595), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 163/506 (32%), Positives = 244/506 (48%), Gaps = 39/506 (7%)
Query: 749 SMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDT 808
S YC + ++ ++R F ++M V +FD+ STG + +R++ D+ V
Sbjct: 85 SSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ--ESTGGLLSRITYDSEQVAGATSRA 142
Query: 809 LSLLVQNTATAVVGLVIAFKACWQXXXXXXXXXXXXGITGHIQMKSMKGFSANAENMYEE 868
L +V+ A+ + L + F WQ K + S N +
Sbjct: 143 LVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGH 202
Query: 869 ASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQXXXXXXXXXXXXXXXXXA 928
+ A + + V S+ +E K + K + ++ A
Sbjct: 203 VTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLA 262
Query: 929 -YAVTFY--VGAKLVDHKQATFTEVFRVFFALSMTAIGISQTXXXXXXXXXXXXXXXXVF 985
+AV F V + + TFT VF F L ++ +F
Sbjct: 263 LFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQT---LF 319
Query: 986 GLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKY-----PTRPHIEVFRDLCLTIPPGK 1040
GL+D ++ D+ +Y E V GEV V+F Y P H+ +IP GK
Sbjct: 320 GLMDLETERDNGKYEA---ERVNGEVDVKDVTFTYQGKEKPALSHV------SFSIPQGK 370
Query: 1041 TIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFS 1100
T+ALVG SGSGKST+ +L RFYD SG I LDG +++ ++ LR+ +VSQ LF+
Sbjct: 371 TVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFN 430
Query: 1101 DTIRANIA----------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVA 1144
DTI NIA A+A FI + +G DT++GE G LSGGQ+QRVA
Sbjct: 431 DTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVA 490
Query: 1145 IARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAV 1204
IARA++++ +L+LDEATSALD ESER +Q ALD++ ++T LV+AHRLSTI+ A I V
Sbjct: 491 IARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILV 550
Query: 1205 VSQGMIVEKGSHESLISTKNGIYTSL 1230
V +G I+E+G H L++ ++G Y L
Sbjct: 551 VDEGEIIERGRHADLLA-QDGAYAQL 575
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 226 bits (576), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 127/262 (48%), Positives = 169/262 (64%), Gaps = 18/262 (6%)
Query: 984 VFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIA 1043
VF LID+ I + + +E G + VSF+Y + +D+ L+I G+T+A
Sbjct: 314 VFQLIDEDYDIKNG-VGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVA 371
Query: 1044 LVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTI 1103
VG SG GKST+I+L+ RFYD +SG I +DG I+ LR Q+G+V Q+ +LFSDT+
Sbjct: 372 FVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTV 431
Query: 1104 RANI---------------AEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARA 1148
+ NI A+MANA+ FI L +GYDT VGERGV+LSGGQKQR++IAR
Sbjct: 432 KENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARI 491
Query: 1149 IVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQG 1208
+ P IL+LDEATSALD+ESE ++Q+ALD + DRTTL+VAHRLSTI +A I V+ G
Sbjct: 492 FLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENG 551
Query: 1209 MIVEKGSHESLISTKNGIYTSL 1230
IVE G+H LI+ K G Y L
Sbjct: 552 HIVETGTHRELIA-KQGAYEHL 572
Score = 213 bits (543), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 116/242 (47%), Positives = 155/242 (64%), Gaps = 2/242 (0%)
Query: 382 RGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQA 441
+G I++ V+F Y + IL L I G A VG SG GKST+I+LI RFYD +
Sbjct: 337 QGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS 395
Query: 442 GEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXX 501
G++LIDG N+K+F +R +IGLV Q+ +L S ++++NI G+
Sbjct: 396 GQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMAN 455
Query: 502 XSHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRM 561
FI NLPQG DT VGE G++LSGGQKQR++IAR + +P IL+LDEATSALD ES +
Sbjct: 456 AHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESI 515
Query: 562 VQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIR 621
+QEALD + +RTT+IV+HRLS I +A+ I VI+ G IVE GTH EL+ GAY L
Sbjct: 516 IQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQ-GAYEHLYS 574
Query: 622 LQ 623
+Q
Sbjct: 575 IQ 576
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 211 bits (537), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 117/237 (49%), Positives = 155/237 (65%), Gaps = 18/237 (7%)
Query: 1009 GEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG 1068
G ++F V F Y E +D+ T+ PG+T+ALVG SG+GKST++ LL RFYD SSG
Sbjct: 52 GRIEFENVHFSYADGR--ETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSG 109
Query: 1069 HITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI---------------AEMANA 1113
I +DG +I ++ LR +GVV Q+ VLF+DTI NI A+ A
Sbjct: 110 CIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGI 169
Query: 1114 NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVV 1173
+ I EGY T VGERG++LSGG+KQRVAIAR I+K P I+LLDEATSALD +ER +
Sbjct: 170 HDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAI 229
Query: 1174 QDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSL 1230
Q +L +V +RTT+VVAHRLST+ NA I V+ G IVE+G HE+L+S + G+Y +
Sbjct: 230 QASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLS-RGGVYADM 285
Score = 188 bits (477), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/250 (42%), Positives = 151/250 (60%), Gaps = 3/250 (1%)
Query: 382 RGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQA 441
+G IE ++V+FSY + L + G ALVG SG+GKST++ L+ RFYD +
Sbjct: 51 KGRIEFENVHFSYA--DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISS 108
Query: 442 GEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXX 501
G + IDG ++ + +R IG+V Q+ VL + +I DNI YG+
Sbjct: 109 GCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAG 168
Query: 502 XSHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRM 561
I P+G T VGE G++LSGG+KQRVAIAR ++K P I+LLDEATSALD+ + R
Sbjct: 169 IHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERA 228
Query: 562 VQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIR 621
+Q +L +V NRTT++V+HRLS + NA+ I VI+ G IVE+G H LL G Y + +
Sbjct: 229 IQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRG-GVYADMWQ 287
Query: 622 LQETCKESEK 631
LQ+ +E+ +
Sbjct: 288 LQQGQEETSE 297
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 209 bits (531), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 144/490 (29%), Positives = 242/490 (49%), Gaps = 36/490 (7%)
Query: 763 RIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVG 822
R+R FEK+ + VG+FD H G I +R+ +D + +++G+++ T
Sbjct: 111 RLRKELFEKLQRVPVGFFDRTPH--GDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGA 168
Query: 823 LVIAFKA-CWQXXXXXXXXXXXXGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIR 881
+++ F+ IT + ++ K F N + + + + + + +S +
Sbjct: 169 VIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYEN-QRVLGQLNGIIEEDISGLT 227
Query: 882 TVASFCAEEKVMKLYKKKCEGPIKAGIRQXXXXXXXXXXXXXXXXXAYAVTFYVGAKLVD 941
+ F EEK M+ + + E K G + +A+ G L
Sbjct: 228 VIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLAL 287
Query: 942 HKQ------ATFTEVFRVFFALSMTAIGISQTXXXXXXXXXXXXXXXXVFGLIDQVSKID 995
ATF R F +++ +F ++D + D
Sbjct: 288 KDIITVGTIATFIGYSRQF------TRPLNELSNQFNMIQMALASAERIFEILDLEEEKD 341
Query: 996 SSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTV 1055
+ L V GE++F V F Y + V +D+ I PG+ +ALVG +GSGK+T+
Sbjct: 342 DPDAV--ELREVRGEIEFKNVWFSYDKKK--PVLKDITFHIKPGQKVALVGPTGSGKTTI 397
Query: 1056 ISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI-------- 1107
++LL RFYD G I +DG++I+K++ LR +G+V Q+ +LFS T++ N+
Sbjct: 398 VNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGAT 457
Query: 1108 -------AEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDE 1160
A++ +++ FI L EGY+T++ + G LS GQ+Q +AI RA + PKIL+LDE
Sbjct: 458 DEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDE 517
Query: 1161 ATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLI 1220
ATS +D ++E+ +Q A+ ++M +T++++AHRL+TIKNA LI V+ G IVE G H+ LI
Sbjct: 518 ATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELI 577
Query: 1221 STKNGIYTSL 1230
K G Y L
Sbjct: 578 Q-KRGFYYEL 586
Score = 208 bits (529), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 132/486 (27%), Positives = 251/486 (51%), Gaps = 6/486 (1%)
Query: 138 RIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGF 197
R+R E + R + FFD+ + G+++ R+ D I + +G + +F + G
Sbjct: 111 RLRKELFEKLQRVPVGFFDRTPH-GDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAV 169
Query: 198 LIAFFKGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTV 257
++ F +L+L LS +P V+ ++ + Q ++ + I + +
Sbjct: 170 IMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVI 229
Query: 258 ASFTGEQQASSIYNKCLVKSYKSSVQEGLATGLGLGASVFIIFSAYGLGVWYGAKLILEK 317
FT E++ +++ K + + +G+ + + L +G L L+
Sbjct: 230 KLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKD 289
Query: 318 GYSGGDVMSVIFGVLIGSMSLGQASPCLSXXXXXXXXXXXXXXXINRKPEIDLCCVNGKK 377
+ G + + I + L + S + ++ + E D + +
Sbjct: 290 IITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKD--DPDAVE 347
Query: 378 LDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFY 437
L ++RG+IE K+V FSY + + +L I G ALVG +GSGK+T+++L+ RFY
Sbjct: 348 LREVRGEIEFKNVWFSYDKK--KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY 405
Query: 438 DPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXX 497
D G++L+DG+++++ + +R IG+V Q+ +L S+++++N+ YG
Sbjct: 406 DVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAA 465
Query: 498 XXXXXSHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE 557
HFIK+LP+G +T + ++G LS GQ+Q +AI RA + +P+IL+LDEATS +D++
Sbjct: 466 KLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTK 525
Query: 558 SGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYN 617
+ + +Q A+ ++M +T++I++HRL+ I+NA++I V++ G+IVE G H EL++ G Y
Sbjct: 526 TEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK-RGFYY 584
Query: 618 RLIRLQ 623
L Q
Sbjct: 585 ELFTSQ 590
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 206 bits (523), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 104/240 (43%), Positives = 155/240 (64%), Gaps = 2/240 (0%)
Query: 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443
+IE DVNFSYP + + + L IP+GT ALVG +GSGKST+ L+ RFYD + G+
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE-GD 75
Query: 444 VLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXS 503
+ I G N+ ++ IR IG+V Q+ +L + +I+ NI YGK
Sbjct: 76 IKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLY 135
Query: 504 HFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQ 563
FI+ LP+ DT VG G++LSGG++QR+AIAR ++KDP+I++ DEATS+LDS++ + Q
Sbjct: 136 DFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQ 195
Query: 564 EALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQ 623
+A++ + NRT +I++HRLS I +A I ++ +GKIVEKGTH +LL+ G Y + +Q
Sbjct: 196 KAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLK-LNGEYAEMWNMQ 254
Score = 184 bits (466), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 149/235 (63%), Gaps = 17/235 (7%)
Query: 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI 1070
++F V+F YP + + + + IP G T ALVG +GSGKST+ LL RFYD + G I
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-AEGDI 76
Query: 1071 TLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI---------------AEMANANG 1115
+ G + K +R +G+V Q+ +LF++TI+ NI + A
Sbjct: 77 KIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYD 136
Query: 1116 FISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQD 1175
FI L + +DT+VG +G++LSGG++QR+AIAR ++K+PKI++ DEATS+LD ++E + Q
Sbjct: 137 FIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQK 196
Query: 1176 ALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSL 1230
A++ + +RT +++AHRLSTI +A I ++++G IVEKG+H+ L+ NG Y +
Sbjct: 197 AVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL-NGEYAEM 250
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 205 bits (522), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 108/239 (45%), Positives = 156/239 (65%), Gaps = 18/239 (7%)
Query: 1010 EVQFLRVSFKY-PTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG 1068
++ F + F+Y P P I ++ L+I G+ I +VG SGSGKST+ L+QRFY P +G
Sbjct: 1 DITFRNIRFRYKPDSPVI--LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 1069 HITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI---------------AEMANA 1113
+ +DG ++ WLR+Q+GVV Q+ VL + +I NI A++A A
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 1114 NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVV 1173
+ FIS L+EGY+T+VGE+G LSGGQ+QR+AIARA+V PKIL+ DEATSALD ESE V+
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 1174 QDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIE 1232
+ ++ RT +++AHRLST+KNA I V+ +G IVE+G H+ L+S +Y+ L +
Sbjct: 179 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 237
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 107/241 (44%), Positives = 151/241 (62%), Gaps = 3/241 (1%)
Query: 384 DIELKDVNFSYPARPDEQ-ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442
DI +++ F Y +PD IL+ L I G + +VG SGSGKST+ LIQRFY P+ G
Sbjct: 1 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 443 EVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXX 502
+VLIDG +L W+R ++G+V Q+ VLL+ SI DNI+
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 503 SHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMV 562
FI L +G +T VGE G LSGGQ+QR+AIARA++ +P+IL+ DEATSALD ES ++
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 563 QEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRL 622
+ ++ RT +I++HRLS ++NA+ I V+++GKIVE+G H ELL P Y+ L +L
Sbjct: 179 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238
Query: 623 Q 623
Q
Sbjct: 239 Q 239
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound
State
Length = 247
Score = 205 bits (522), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 108/239 (45%), Positives = 156/239 (65%), Gaps = 18/239 (7%)
Query: 1010 EVQFLRVSFKY-PTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG 1068
++ F + F+Y P P I ++ L+I G+ I +VG SGSGKST+ L+QRFY P +G
Sbjct: 7 DITFRNIRFRYKPDSPVI--LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 1069 HITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI---------------AEMANA 1113
+ +DG ++ WLR+Q+GVV Q+ VL + +I NI A++A A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 1114 NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVV 1173
+ FIS L+EGY+T+VGE+G LSGGQ+QR+AIARA+V PKIL+ DEATSALD ESE V+
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 1174 QDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIE 1232
+ ++ RT +++AHRLST+KNA I V+ +G IVE+G H+ L+S +Y+ L +
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 107/241 (44%), Positives = 151/241 (62%), Gaps = 3/241 (1%)
Query: 384 DIELKDVNFSYPARPDEQ-ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442
DI +++ F Y +PD IL+ L I G + +VG SGSGKST+ LIQRFY P+ G
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 443 EVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXX 502
+VLIDG +L W+R ++G+V Q+ VLL+ SI DNI+
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 503 SHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMV 562
FI L +G +T VGE G LSGGQ+QR+AIARA++ +P+IL+ DEATSALD ES ++
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 563 QEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRL 622
+ ++ RT +I++HRLS ++NA+ I V+++GKIVE+G H ELL P Y+ L +L
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 623 Q 623
Q
Sbjct: 245 Q 245
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With
Tnp-Adp
Length = 243
Score = 205 bits (521), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 108/239 (45%), Positives = 156/239 (65%), Gaps = 18/239 (7%)
Query: 1010 EVQFLRVSFKY-PTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG 1068
++ F + F+Y P P I ++ L+I G+ I +VG SGSGKST+ L+QRFY P +G
Sbjct: 3 DITFRNIRFRYKPDSPVI--LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 60
Query: 1069 HITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI---------------AEMANA 1113
+ +DG ++ WLR+Q+GVV Q+ VL + +I NI A++A A
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 1114 NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVV 1173
+ FIS L+EGY+T+VGE+G LSGGQ+QR+AIARA+V PKIL+ DEATSALD ESE V+
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 1174 QDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIE 1232
+ ++ RT +++AHRLST+KNA I V+ +G IVE+G H+ L+S +Y+ L +
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 239
Score = 201 bits (512), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 107/241 (44%), Positives = 151/241 (62%), Gaps = 3/241 (1%)
Query: 384 DIELKDVNFSYPARPDEQ-ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442
DI +++ F Y +PD IL+ L I G + +VG SGSGKST+ LIQRFY P+ G
Sbjct: 3 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 60
Query: 443 EVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXX 502
+VLIDG +L W+R ++G+V Q+ VLL+ SI DNI+
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 503 SHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMV 562
FI L +G +T VGE G LSGGQ+QR+AIARA++ +P+IL+ DEATSALD ES ++
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 563 QEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRL 622
+ ++ RT +I++HRLS ++NA+ I V+++GKIVE+G H ELL P Y+ L +L
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 240
Query: 623 Q 623
Q
Sbjct: 241 Q 241
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 204 bits (518), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 107/239 (44%), Positives = 156/239 (65%), Gaps = 18/239 (7%)
Query: 1010 EVQFLRVSFKY-PTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG 1068
++ F + F+Y P P I ++ L+I G+ I +VG +GSGKST+ L+QRFY P +G
Sbjct: 3 DITFRNIRFRYKPDSPVI--LDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENG 60
Query: 1069 HITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI---------------AEMANA 1113
+ +DG ++ WLR+Q+GVV Q+ VL + +I NI A++A A
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 1114 NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVV 1173
+ FIS L+EGY+T+VGE+G LSGGQ+QR+AIARA+V PKIL+ DEATSALD ESE V+
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 1174 QDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIE 1232
+ ++ RT +++AHRLST+KNA I V+ +G IVE+G H+ L+S +Y+ L +
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 239
Score = 200 bits (509), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 106/241 (43%), Positives = 151/241 (62%), Gaps = 3/241 (1%)
Query: 384 DIELKDVNFSYPARPDEQ-ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442
DI +++ F Y +PD IL+ L I G + +VG +GSGKST+ LIQRFY P+ G
Sbjct: 3 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENG 60
Query: 443 EVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXX 502
+VLIDG +L W+R ++G+V Q+ VLL+ SI DNI+
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 503 SHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMV 562
FI L +G +T VGE G LSGGQ+QR+AIARA++ +P+IL+ DEATSALD ES ++
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 563 QEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRL 622
+ ++ RT +I++HRLS ++NA+ I V+++GKIVE+G H ELL P Y+ L +L
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 240
Query: 623 Q 623
Q
Sbjct: 241 Q 241
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 204 bits (518), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 107/239 (44%), Positives = 156/239 (65%), Gaps = 18/239 (7%)
Query: 1010 EVQFLRVSFKY-PTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG 1068
++ F + F+Y P P I ++ L+I G+ I +VG SGSGKST+ L+QRFY P +G
Sbjct: 7 DITFRNIRFRYKPDSPVI--LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 1069 HITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI---------------AEMANA 1113
+ +DG ++ WLR+Q+GVV Q+ VL + +I NI A++A A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 1114 NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVV 1173
+ FIS L+EGY+T+VGE+G LSGGQ+QR+AIARA+V PKIL+ D+ATSALD ESE V+
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI 184
Query: 1174 QDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIE 1232
+ ++ RT +++AHRLST+KNA I V+ +G IVE+G H+ L+S +Y+ L +
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243
Score = 200 bits (509), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 106/241 (43%), Positives = 151/241 (62%), Gaps = 3/241 (1%)
Query: 384 DIELKDVNFSYPARPDEQ-ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442
DI +++ F Y +PD IL+ L I G + +VG SGSGKST+ LIQRFY P+ G
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 443 EVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXX 502
+VLIDG +L W+R ++G+V Q+ VLL+ SI DNI+
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 503 SHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMV 562
FI L +G +T VGE G LSGGQ+QR+AIARA++ +P+IL+ D+ATSALD ES ++
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI 184
Query: 563 QEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRL 622
+ ++ RT +I++HRLS ++NA+ I V+++GKIVE+G H ELL P Y+ L +L
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 623 Q 623
Q
Sbjct: 245 Q 245
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 201 bits (511), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 107/239 (44%), Positives = 155/239 (64%), Gaps = 18/239 (7%)
Query: 1010 EVQFLRVSFKY-PTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG 1068
++ F + F+Y P P I ++ L+I G+ I +VG SGSGKST+ L+QRFY P +G
Sbjct: 1 DITFRNIRFRYKPDSPVI--LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 1069 HITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI---------------AEMANA 1113
+ +DG ++ WLR+Q+GVV Q+ VL + +I NI A++A A
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 1114 NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVV 1173
+ FIS L+EGY+T+VGE+G LSGGQ+QR+AIARA+V PKIL+ DEATSALD ESE V+
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 1174 QDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIE 1232
+ ++ RT +++A RLST+KNA I V+ +G IVE+G H+ L+S +Y+ L +
Sbjct: 179 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 237
Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 106/241 (43%), Positives = 150/241 (62%), Gaps = 3/241 (1%)
Query: 384 DIELKDVNFSYPARPDEQ-ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442
DI +++ F Y +PD IL+ L I G + +VG SGSGKST+ LIQRFY P+ G
Sbjct: 1 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 443 EVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXX 502
+VLIDG +L W+R ++G+V Q+ VLL+ SI DNI+
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 503 SHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMV 562
FI L +G +T VGE G LSGGQ+QR+AIARA++ +P+IL+ DEATSALD ES ++
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 563 QEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRL 622
+ ++ RT +I++ RLS ++NA+ I V+++GKIVE+G H ELL P Y+ L +L
Sbjct: 179 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238
Query: 623 Q 623
Q
Sbjct: 239 Q 239
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter
Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 201 bits (511), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 107/239 (44%), Positives = 155/239 (64%), Gaps = 18/239 (7%)
Query: 1010 EVQFLRVSFKY-PTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG 1068
++ F + F+Y P P I ++ L+I G+ I +VG SGSGKST+ L+QRFY P +G
Sbjct: 7 DITFRNIRFRYKPDSPVI--LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 1069 HITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI---------------AEMANA 1113
+ +DG ++ WLR+Q+GVV Q+ VL + +I NI A++A A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 1114 NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVV 1173
+ FIS L+EGY+T+VGE+G LSGGQ+QR+AIARA+V PKIL+ DEATSALD ESE V+
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 1174 QDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIE 1232
+ ++ RT +++A RLST+KNA I V+ +G IVE+G H+ L+S +Y+ L +
Sbjct: 185 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243
Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 106/241 (43%), Positives = 150/241 (62%), Gaps = 3/241 (1%)
Query: 384 DIELKDVNFSYPARPDEQ-ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442
DI +++ F Y +PD IL+ L I G + +VG SGSGKST+ LIQRFY P+ G
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 443 EVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXX 502
+VLIDG +L W+R ++G+V Q+ VLL+ SI DNI+
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 503 SHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMV 562
FI L +G +T VGE G LSGGQ+QR+AIARA++ +P+IL+ DEATSALD ES ++
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 563 QEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRL 622
+ ++ RT +I++ RLS ++NA+ I V+++GKIVE+G H ELL P Y+ L +L
Sbjct: 185 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 623 Q 623
Q
Sbjct: 245 Q 245
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 198 bits (504), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 101/244 (41%), Positives = 152/244 (62%), Gaps = 4/244 (1%)
Query: 380 DIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP 439
+++G ++ +DV+F+YP P+ Q+L G + G + ALVG +GSGKSTV +L+Q Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 440 QAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXX 499
G+VL+DG L ++ ++ ++ V QEP+L S R+NIAYG T
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 500 XXXSH-FIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSES 558
+H FI PQG DT VGE G QLSGGQ+Q VA+ARA+I+ PR+L+LD+ATSALD+ +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGN 191
Query: 559 GRMVQEAL--DRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAY 616
VQ L +RT ++++H+LSL A+ I +++G + E+GTH +L+E G Y
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERG-GCY 250
Query: 617 NRLI 620
++
Sbjct: 251 RSMV 254
Score = 194 bits (492), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 104/245 (42%), Positives = 150/245 (61%), Gaps = 19/245 (7%)
Query: 1006 NVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP 1065
N+ G V+F VSF YP P+++V + L T+ PGK ALVG +GSGKSTV +LLQ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 1066 SSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAE---------------- 1109
+ G + LDG + + +L Q+ V QEP+LF + R NIA
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 1110 MANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIES 1169
+ A+ FISG +GYDT VGE G QLSGGQ+Q VA+ARA++++P++L+LD+ATSALD +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGN 191
Query: 1170 ERVVQDALDQV--MVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIY 1227
+ VQ L + RT L++ H+LS + AH I + +G + E+G+H L+ + G Y
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLME-RGGCY 250
Query: 1228 TSLIE 1232
S++E
Sbjct: 251 RSMVE 255
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 194 bits (494), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/244 (40%), Positives = 150/244 (61%), Gaps = 4/244 (1%)
Query: 380 DIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP 439
+++G ++ +DV+F+YP P+ Q+L G + G + ALVG +GSGKSTV +L+Q Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 440 QAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXX 499
G+VL+DG L ++ ++ ++ V QEP+L S R+NIAYG T
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 500 XXXSH-FIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSES 558
+H FI PQG DT VGE G QLSGGQ+Q VA+ARA+I+ PR+L+LD ATSALD+ +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 559 GRMVQEAL--DRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAY 616
VQ L +RT ++++ +LSL A+ I +++G + E+GTH +L+E G Y
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERG-GCY 250
Query: 617 NRLI 620
++
Sbjct: 251 RSMV 254
Score = 190 bits (482), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 103/245 (42%), Positives = 148/245 (60%), Gaps = 19/245 (7%)
Query: 1006 NVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP 1065
N+ G V+F VSF YP P+++V + L T+ PGK ALVG +GSGKSTV +LLQ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 1066 SSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAE---------------- 1109
+ G + LDG + + +L Q+ V QEP+LF + R NIA
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 1110 MANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIES 1169
+ A+ FISG +GYDT VGE G QLSGGQ+Q VA+ARA++++P++L+LD ATSALD +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 1170 ERVVQDALDQV--MVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIY 1227
+ VQ L + RT L++ +LS + AH I + +G + E+G+H L+ + G Y
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME-RGGCY 250
Query: 1228 TSLIE 1232
S++E
Sbjct: 251 RSMVE 255
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 191 bits (486), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 97/223 (43%), Positives = 145/223 (65%), Gaps = 3/223 (1%)
Query: 388 KDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLID 447
+ V+F+Y EQIL +I A G SG GKST+ SL++RFY P AGE+ ID
Sbjct: 5 RHVDFAYD--DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITID 62
Query: 448 GVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYG-KTHXXXXXXXXXXXXXXXSHFI 506
G + L+ R +IG VSQ+ +++ +IR+N+ YG + F+
Sbjct: 63 GQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFV 122
Query: 507 KNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEAL 566
+N+P L+T VGE G+++SGGQ+QR+AIARA +++P+IL+LDEAT++LDSES MVQ+AL
Sbjct: 123 ENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
Query: 567 DRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELL 609
D +M RTT++++HRLS I +A+ I I++G+I G H+EL+
Sbjct: 183 DSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELV 225
Score = 189 bits (480), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 100/223 (44%), Positives = 137/223 (61%), Gaps = 18/223 (8%)
Query: 1016 VSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV 1075
V F Y I RD+ P IA G SG GKST+ SLL+RFY P++G IT+DG
Sbjct: 7 VDFAYDDSEQI--LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQ 64
Query: 1076 EIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA----------------EMANANGFISG 1119
I + ++ R Q+G VSQ+ + + TIR N+ ++A A F+
Sbjct: 65 PIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVEN 124
Query: 1120 LQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQ 1179
+ + +T VGERGV++SGGQ+QR+AIARA ++ PKIL+LDEAT++LD ESE +VQ ALD
Sbjct: 125 MPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS 184
Query: 1180 VMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLIST 1222
+M RTTLV+AHRLSTI +A I + +G I G H L++T
Sbjct: 185 LMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT 227
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 189 bits (481), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 98/244 (40%), Positives = 149/244 (61%), Gaps = 4/244 (1%)
Query: 380 DIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP 439
+++G ++ +DV+F+YP P+ Q+L G + G + ALVG +GSGKSTV +L+Q Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 440 QAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXX 499
G+VL+DG L ++ ++ ++ V QEP+L S R+NIAYG T
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 500 XXXSH-FIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSES 558
+H FI PQG DT VGE G QL+ GQ+Q VA+ARA+I+ PR+L+LD ATSALD+ +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 559 GRMVQEAL--DRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAY 616
VQ L +RT ++++ +LSL A+ I +++G + E+GTH +L+E G Y
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERG-GCY 250
Query: 617 NRLI 620
++
Sbjct: 251 RSMV 254
Score = 184 bits (468), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/245 (41%), Positives = 147/245 (60%), Gaps = 19/245 (7%)
Query: 1006 NVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP 1065
N+ G V+F VSF YP P+++V + L T+ PGK ALVG +GSGKSTV +LLQ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 1066 SSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAE---------------- 1109
+ G + LDG + + +L Q+ V QEP+LF + R NIA
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 1110 MANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIES 1169
+ A+ FISG +GYDT VGE G QL+ GQ+Q VA+ARA++++P++L+LD ATSALD +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 1170 ERVVQDALDQV--MVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIY 1227
+ VQ L + RT L++ +LS + AH I + +G + E+G+H L+ + G Y
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME-RGGCY 250
Query: 1228 TSLIE 1232
S++E
Sbjct: 251 RSMVE 255
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 189 bits (480), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 145/234 (61%), Gaps = 3/234 (1%)
Query: 381 IRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQ 440
+ G ++ +DV+F+YP RPD +L G + G + ALVG +GSGKSTV +L+Q Y P
Sbjct: 11 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 70
Query: 441 AGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXX 500
G++L+DG L +++ +++ ++ V QEP + S+++NIAYG T
Sbjct: 71 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 130
Query: 501 XXSH-FIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESG 559
+H FI LPQG DT V E G QLSGGQ+Q VA+ARA+I+ P +L+LD+ATSALD+ S
Sbjct: 131 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 190
Query: 560 RMVQEAL--DRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLEN 611
V++ L +R+ ++++ LSL+ A+ I ++ G I E GTH +L+E
Sbjct: 191 LQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK 244
Score = 179 bits (454), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 148/245 (60%), Gaps = 19/245 (7%)
Query: 1006 NVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP 1065
++ G VQF VSF YP RP + V + L T+ PG+ ALVG +GSGKSTV +LLQ Y P
Sbjct: 10 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP 69
Query: 1066 SSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAE---------------- 1109
+ G + LDG + + + ++L +Q+ V QEP +F +++ NIA
Sbjct: 70 TGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAV 129
Query: 1110 MANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIES 1169
+ A+ FISGL +GYDT V E G QLSGGQ+Q VA+ARA++++P +L+LD+ATSALD S
Sbjct: 130 KSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANS 189
Query: 1170 ERVVQDALDQV--MVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIY 1227
+ V+ L + R+ L++ LS ++ A I + G I E G+H+ L+ K G Y
Sbjct: 190 QLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLME-KKGCY 248
Query: 1228 TSLIE 1232
++++
Sbjct: 249 WAMVQ 253
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 187 bits (476), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 128/472 (27%), Positives = 231/472 (48%), Gaps = 7/472 (1%)
Query: 147 ILRQDIAFFDKEIN---TGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFK 203
+ R+ ++F +N T ++ R++ D +Q+ + + ++ F+GG ++A
Sbjct: 102 LFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSI 161
Query: 204 GWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGE 263
L+ ++ IPP+V+ V + K L + Q + VV + + +R V +F E
Sbjct: 162 NVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRRE 221
Query: 264 QQASSIYNKCLVKSYKSSVQEGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGD 323
+ + + K +S + L +FI+ +W+G L+ G
Sbjct: 222 EYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGS 281
Query: 324 VMSVIFGVLIGSMSLGQASPCLSXXXXXXXXXXXXXXXINRKPEIDLCCVNGKKLDDIRG 383
+M+ ++ SL L+ +N KP I+ N L ++ G
Sbjct: 282 IMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEAD-NALALPNVEG 340
Query: 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443
+ ++V F Y D +L+G + G++ A++G +GSGKST+++LI R DP+ G
Sbjct: 341 SVSFENVEFRYFENTD-PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGR 399
Query: 444 VLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXS 503
V +D ++++ +LK +R I V QE VL S +I++N+ +G+
Sbjct: 400 VEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIH 459
Query: 504 HFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQ 563
FI +LP+G D+ V G SGGQKQR++IARA++K P++L+LD+ TS++D + + +
Sbjct: 460 DFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRIL 519
Query: 564 EALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLEN--PY 613
+ L R TT I++ ++ A+ I V+ +GK+ GTH ELLE+ PY
Sbjct: 520 DGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPY 571
Score = 153 bits (386), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 121/474 (25%), Positives = 214/474 (45%), Gaps = 23/474 (4%)
Query: 764 IRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGL 823
+R F KV+ + + T ++ RL++D +++LV L ++V+ V G+
Sbjct: 98 LRRDLFRKVLSFSISNVNR--FHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGI 155
Query: 824 VIAFKACWQXXXXXXXXXXXXGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTV 883
V+A + + K + +E ++V + + +R V
Sbjct: 156 VMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVV 215
Query: 884 ASFCAEEKVMKLYKKKCEGPIKAGIRQXXXXXXXXXXXXXXXXXAYAVTFYVGAKLVDHK 943
+F EE + ++K E ++ I + G LV +
Sbjct: 216 RAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNN 275
Query: 944 QATFTEVFRVFFALSMTAIGISQTXXXXXXXXXXXXXXXXVFGLIDQVSKIDSSEYTGRT 1003
Q + L + V ++++ I+ ++
Sbjct: 276 QMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEAD-NALA 334
Query: 1004 LENVMGEVQFLRVSFKY--PTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQR 1061
L NV G V F V F+Y T P V + ++ PG +A++GE+GSGKST+++L+ R
Sbjct: 335 LPNVEGSVSFENVEFRYFENTDP---VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPR 391
Query: 1062 FYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI-------------- 1107
DP G + +D ++++ +++K LR + V QE VLFS TI+ N+
Sbjct: 392 LIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVE 451
Query: 1108 -AEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALD 1166
A++A + FI L EGYD+ V G SGGQKQR++IARA+VK+PK+L+LD+ TS++D
Sbjct: 452 AAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
Query: 1167 IESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLI 1220
+E+ + D L + TT ++ ++ T A I V+ +G + G+H+ L+
Sbjct: 512 PITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELL 565
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 123/240 (51%), Gaps = 19/240 (7%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
I +++ F++ AR D LNG IP G + A+VG G GKS+++S + D G V
Sbjct: 4 ITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXSH 504
I G + V Q+ + + S+R+NI +G
Sbjct: 63 AIKG-------------SVAYVPQQAWIQNDSLRENILFG-CQLEEPYYRSVIQACALLP 108
Query: 505 FIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQE 564
++ LP G T +GE G+ LSGGQKQRV++ARA+ + I L D+ SA+D+ G+ + E
Sbjct: 109 DLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFE 168
Query: 565 AL---DRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIR 621
+ ++ N+T ++V+H +S + ++I V+ GKI E G++ ELL GA+ +R
Sbjct: 169 NVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARD-GAFAEFLR 227
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 119/239 (49%), Gaps = 18/239 (7%)
Query: 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS 1067
M + +F + R + +IP G +A+VG+ G GKS+++S L D
Sbjct: 1 MNSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE 59
Query: 1068 GHITLDGVEIQKLQVKWLRQQ-------MGVVSQEPVLFSDTIRANIAEMANANGFISGL 1120
GH+ + G Q W++ G +EP + I+A A + + + L
Sbjct: 60 GHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEP-YYRSVIQA-CALLPD----LEIL 113
Query: 1121 QEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIE-SERVVQDALDQ 1179
G T +GE+GV LSGGQKQRV++ARA+ I L D+ SA+D + + ++ +
Sbjct: 114 PSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGP 173
Query: 1180 --VMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPHTT 1236
++ ++T ++V H +S + +I V+S G I E GS++ L++ ++G + + + +
Sbjct: 174 KGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLA-RDGAFAEFLRTYAS 231
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 112 bits (281), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 116/221 (52%), Gaps = 16/221 (7%)
Query: 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDG---VNLKEFQLK 457
Q LN L +P G I ++G SG+GKST+I + P G VL+DG L E +L
Sbjct: 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 78
Query: 458 WIREKIGLVSQEPVLLSS-SIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKNLPQGLDTN 516
R +IG++ Q LLSS ++ N+A + GL
Sbjct: 79 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLV-----GLGDK 133
Query: 517 VGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINR--- 573
+ LSGGQKQRVAIARA+ +P++LL DEATSALD + R + E L INR
Sbjct: 134 HDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKD--INRRLG 191
Query: 574 -TTVIVSHRLSLI-RNANIIAVIQQGKIVEKGTHSELLENP 612
T ++++H + ++ R + +AVI G+++E+ T SE+ +P
Sbjct: 192 LTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHP 232
Score = 100 bits (248), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 116/219 (52%), Gaps = 26/219 (11%)
Query: 1018 FKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEI 1077
F TR I+ ++ L +P G+ ++G SG+GKST+I + P+ G + +DG E+
Sbjct: 11 FHQGTRT-IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQEL 69
Query: 1078 QKLQVKWL---RQQMGVVSQE-PVLFSDTIRANIA---EMANANG-----------FISG 1119
L L R+Q+G++ Q +L S T+ N+A E+ N + G
Sbjct: 70 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVG 129
Query: 1120 LQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQ 1179
L + +D+ LSGGQKQRVAIARA+ PK+LL DEATSALD + R + + L
Sbjct: 130 LGDKHDSYPS----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKD 185
Query: 1180 V--MVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGS 1215
+ + T L++ H + +K +AV+S G ++E+ +
Sbjct: 186 INRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDT 224
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 16/221 (7%)
Query: 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDG---VNLKEFQLK 457
Q LN L +P G I ++G SG+GKST+I + P G VL+DG L E +L
Sbjct: 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101
Query: 458 WIREKIGLVSQEPVLLSS-SIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKNLPQGLDTN 516
R +IG++ Q LLSS ++ N+A + GL
Sbjct: 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLV-----GLGDK 156
Query: 517 VGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINR--- 573
+ LSGGQKQRVAIARA+ +P++LL D+ATSALD + R + E L INR
Sbjct: 157 HDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD--INRRLG 214
Query: 574 -TTVIVSHRLSLI-RNANIIAVIQQGKIVEKGTHSELLENP 612
T ++++H + ++ R + +AVI G+++E+ T SE+ +P
Sbjct: 215 LTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHP 255
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 116/219 (52%), Gaps = 26/219 (11%)
Query: 1018 FKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEI 1077
F TR I+ ++ L +P G+ ++G SG+GKST+I + P+ G + +DG E+
Sbjct: 34 FHQGTRT-IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQEL 92
Query: 1078 QKLQVKWL---RQQMGVVSQE-PVLFSDTIRANIA---EMANANG-----------FISG 1119
L L R+Q+G++ Q +L S T+ N+A E+ N + G
Sbjct: 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVG 152
Query: 1120 LQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQ 1179
L + +D+ LSGGQKQRVAIARA+ PK+LL D+ATSALD + R + + L
Sbjct: 153 LGDKHDSYPS----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD 208
Query: 1180 V--MVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGS 1215
+ + T L++ H + +K +AV+S G ++E+ +
Sbjct: 209 INRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDT 247
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 114/221 (51%), Gaps = 16/221 (7%)
Query: 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDG---VNLKEFQLK 457
Q LN L +P G I ++G SG+GKST+I + P G VL+DG L E +L
Sbjct: 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101
Query: 458 WIREKIGLVSQEPVLLSS-SIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKNLPQGLDTN 516
R +IG + Q LLSS ++ N+A + GL
Sbjct: 102 KARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLV-----GLGDK 156
Query: 517 VGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINR--- 573
+ LSGGQKQRVAIARA+ +P++LL D+ATSALD + R + E L INR
Sbjct: 157 HDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD--INRRLG 214
Query: 574 -TTVIVSHRLSLI-RNANIIAVIQQGKIVEKGTHSELLENP 612
T ++++H ++ R + +AVI G+++E+ T SE+ +P
Sbjct: 215 LTILLITHEXDVVKRICDCVAVISNGELIEQDTVSEVFSHP 255
Score = 96.7 bits (239), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 114/219 (52%), Gaps = 26/219 (11%)
Query: 1018 FKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEI 1077
F TR I+ ++ L +P G+ ++G SG+GKST+I + P+ G + +DG E+
Sbjct: 34 FHQGTRT-IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQEL 92
Query: 1078 QKLQVKWL---RQQMGVVSQE-PVLFSDTIRANIA---EMANANG-----------FISG 1119
L L R+Q+G + Q +L S T+ N+A E+ N + G
Sbjct: 93 TTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVG 152
Query: 1120 LQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQ 1179
L + +D+ LSGGQKQRVAIARA+ PK+LL D+ATSALD + R + + L
Sbjct: 153 LGDKHDSYPS----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD 208
Query: 1180 V--MVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGS 1215
+ + T L++ H +K +AV+S G ++E+ +
Sbjct: 209 INRRLGLTILLITHEXDVVKRICDCVAVISNGELIEQDT 247
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 100 bits (249), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 111/214 (51%), Gaps = 11/214 (5%)
Query: 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462
LN L I +G AL+G SGSGKST++ I Y P +G++ D ++ E K
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRN 76
Query: 463 IGLVSQEPVLLSS-SIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKNLPQGLDTNVGEHG 521
+GLV Q L ++ NIA+ + + +D + +
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLH-----IDKLLNRYP 131
Query: 522 IQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVS 579
QLSGGQ+QRVAIARA++K+P +LLLDE S LD+ V+ L R+ + TTV V+
Sbjct: 132 WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVT 191
Query: 580 H-RLSLIRNANIIAVIQQGKIVEKGTHSELLENP 612
H + + A+ IAVI++G+I++ GT E+ P
Sbjct: 192 HDQAEALAMADRIAVIREGEILQVGTPDEVYYKP 225
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 110/203 (54%), Gaps = 16/203 (7%)
Query: 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090
++ L I G+ +AL+G SGSGKST++ + Y P+SG I D ++ +L K + +G
Sbjct: 21 NINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVG 78
Query: 1091 VVSQEPVLFSD-TIRANIA-----EMANANGFISGLQE-----GYDTLVGERGVQLSGGQ 1139
+V Q L+ T+ NIA A ++E D L+ QLSGGQ
Sbjct: 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQ 138
Query: 1140 KQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR--TTLVVAH-RLSTI 1196
+QRVAIARA+VKEP++LLLDE S LD V+ L ++ + TT+ V H + +
Sbjct: 139 QQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEAL 198
Query: 1197 KNAHLIAVVSQGMIVEKGSHESL 1219
A IAV+ +G I++ G+ + +
Sbjct: 199 AMADRIAVIREGEILQVGTPDEV 221
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 110/220 (50%), Gaps = 15/220 (6%)
Query: 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLK--EFQLKW 458
++L G + I G + ++G SGSGKST + + D GE++IDG+NLK + L
Sbjct: 17 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNK 76
Query: 459 IREKIGLVSQEPVLLSS-SIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKNLPQGLDTNV 517
+RE++G+V Q L ++ +NI + + GL
Sbjct: 77 VREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAM--ELLDKV--GLKDKA 132
Query: 518 GEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALD--RVMINR-- 573
+ LSGGQ QRVAIARA+ +P+I+L DE TSALD E MV E L + + N
Sbjct: 133 HAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPE---MVGEVLSVMKQLANEGM 189
Query: 574 TTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENP 612
T V+V+H + R + + + G I+E+G +L + P
Sbjct: 190 TMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 229
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 102/212 (48%), Gaps = 16/212 (7%)
Query: 1026 IEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQ--KLQVK 1083
+EV + + + I G+ + ++G SGSGKST + L D G I +DG+ ++ +
Sbjct: 16 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 75
Query: 1084 WLRQQMGVVSQEPVLFSD-TIRANIA-----------EMANANGFISGLQEGYDTLVGER 1131
+R+++G+V Q LF T+ NI E A A + G
Sbjct: 76 KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAY 135
Query: 1132 GVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTL-VVA 1190
LSGGQ QRVAIARA+ EPKI+L DE TSALD E V + Q+ + T+ VV
Sbjct: 136 PDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVT 195
Query: 1191 HRLSTIKN-AHLIAVVSQGMIVEKGSHESLIS 1221
H + + + + G I+E+G E L
Sbjct: 196 HEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 227
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 110/220 (50%), Gaps = 15/220 (6%)
Query: 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLK--EFQLKW 458
++L G + I G + ++G SGSGKST + + D GE++IDG+NLK + L
Sbjct: 38 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNK 97
Query: 459 IREKIGLVSQEPVLLSS-SIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKNLPQGLDTNV 517
+RE++G+V Q L ++ +NI + + GL
Sbjct: 98 VREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAM--ELLDKV--GLKDKA 153
Query: 518 GEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALD--RVMINR-- 573
+ LSGGQ QRVAIARA+ +P+I+L DE TSALD E MV E L + + N
Sbjct: 154 HAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPE---MVGEVLSVMKQLANEGM 210
Query: 574 TTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENP 612
T V+V+H + R + + + G I+E+G +L + P
Sbjct: 211 TMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 250
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 102/212 (48%), Gaps = 16/212 (7%)
Query: 1026 IEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQ--KLQVK 1083
+EV + + + I G+ + ++G SGSGKST + L D G I +DG+ ++ +
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 96
Query: 1084 WLRQQMGVVSQEPVLFSD-TIRANIA-----------EMANANGFISGLQEGYDTLVGER 1131
+R+++G+V Q LF T+ NI E A A + G
Sbjct: 97 KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAY 156
Query: 1132 GVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTL-VVA 1190
LSGGQ QRVAIARA+ EPKI+L DE TSALD E V + Q+ + T+ VV
Sbjct: 157 PDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVT 216
Query: 1191 HRLSTIKN-AHLIAVVSQGMIVEKGSHESLIS 1221
H + + + + G I+E+G E L
Sbjct: 217 HEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 109/208 (52%), Gaps = 17/208 (8%)
Query: 1039 GKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVL 1098
G+ +AL+G SG GK+T + +L Y P+SG I D V + + K+ +++G+V Q L
Sbjct: 29 GEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY--REVGMVFQNYAL 86
Query: 1099 FSD-TIRANIAEMANANGFISGLQEGY----------DTLVGERGVQLSGGQKQRVAIAR 1147
+ T+ NIA A E D L+ + QLSGGQ+QRVA+AR
Sbjct: 87 YPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALAR 146
Query: 1148 AIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR--TTLVVAH-RLSTIKNAHLIAV 1204
A+VK+PK+LL DE S LD +++ + + + T++ V H + + A IAV
Sbjct: 147 ALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAV 206
Query: 1205 VSQGMIVEKGSHESLI-STKNGIYTSLI 1231
+QG +V+ G+ + + S KN S I
Sbjct: 207 FNQGKLVQYGTPDEVYDSPKNMFVASFI 234
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 114/219 (52%), Gaps = 13/219 (5%)
Query: 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462
++G + +G AL+G SG GK+T + ++ Y P +GE+ D V + + K+ +
Sbjct: 19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY--RE 76
Query: 463 IGLVSQEPVLLSS-SIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKNLPQGLDTNVGEHG 521
+G+V Q L ++ +NIA+ + + +D +
Sbjct: 77 VGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLL-----IDNLLDRKP 131
Query: 522 IQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM---INRTTVIV 578
QLSGGQ+QRVA+ARA++K P++LL DE S LD+ + RM+ A + + + T+V V
Sbjct: 132 TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDA-NLRMIMRAEIKHLQQELGITSVYV 190
Query: 579 SH-RLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAY 616
+H + + A+ IAV QGK+V+ GT E+ ++P +
Sbjct: 191 THDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMF 229
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 92.8 bits (229), Expect = 1e-18, Method: Composition-based stats.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 27/213 (12%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLR 1086
E+ RD C+ L+G +G+GKS + L+ P G + L+G +I L + R
Sbjct: 21 EMGRDYCV---------LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--R 69
Query: 1087 QQMGVVSQEPVLFSD-TIRANIA--------EMANANGFISGLQEGYDTLVGERGVQLSG 1137
+ +G V Q+ LF ++ NIA + + G L+ + +LSG
Sbjct: 70 RGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSG 129
Query: 1138 GQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALD--QVMVDRTTLVVAHRLST 1195
G++QRVA+ARA+V +P++LLLDE SA+D++++ V+ + L Q D L V H L
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-- 187
Query: 1196 IKNAHL---IAVVSQGMIVEKGSHESLISTKNG 1225
I+ A L +AV+ G IVEKG + L S KNG
Sbjct: 188 IEAAMLADEVAVMLNGRIVEKGKLKELFSAKNG 220
Score = 84.3 bits (207), Expect = 3e-16, Method: Composition-based stats.
Identities = 68/201 (33%), Positives = 98/201 (48%), Gaps = 13/201 (6%)
Query: 418 LVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-S 476
L+G +G+GKS + LI P GEV ++G ++ + R IG V Q+ L S
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLS 86
Query: 477 IRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIAR 536
+ NIAYG + I +L LD +LSGG++QRVA+AR
Sbjct: 87 VYRNIAYGLRNVERVERDRRVREMAEKLGIAHL---LDRKPA----RLSGGERQRVALAR 139
Query: 537 AMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANI---IAV 593
A++ PR+LLLDE SA+D ++ ++ E L V I+ LI A + +AV
Sbjct: 140 ALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAV 199
Query: 594 IQQGKIVEKGTHSELLENPYG 614
+ G+IVEKG EL G
Sbjct: 200 MLNGRIVEKGKLKELFSAKNG 220
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 106/202 (52%), Gaps = 15/202 (7%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087
+ ++ +I PG+ + L+G +GSGKST++S R + + G I +DGV + ++ R+
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94
Query: 1088 QMGVVSQEPVLFSDTIRAN-----------IAEMANANGFISGLQE---GYDTLVGERGV 1133
GV+ Q+ +FS T R N I ++A+ G S +++ D ++ + G
Sbjct: 95 AFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGC 154
Query: 1134 QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRL 1193
LS G KQ + +AR+++ + KILLLDE ++ LD + ++++ L Q D T ++ R+
Sbjct: 155 VLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARI 214
Query: 1194 STIKNAHLIAVVSQGMIVEKGS 1215
+ V+ + + + S
Sbjct: 215 EAMLECDQFLVIEENKVRQYDS 236
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 114/243 (46%), Gaps = 6/243 (2%)
Query: 377 KLDDIR---GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLI 433
K DDI G + +KD+ Y IL I G L+G +GSGKST++S
Sbjct: 9 KKDDIWPSGGQMTVKDLTAKY-TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAF 67
Query: 434 QRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXX 493
R + + GE+ IDGV+ L+ R+ G++ Q+ + S + R N+ H
Sbjct: 68 LRLLNTE-GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIW 126
Query: 494 XXXXXXXXXSHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSA 553
S I+ P LD + + G LS G KQ + +AR+++ +ILLLDE ++
Sbjct: 127 KVADEVGLRS-VIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAH 185
Query: 554 LDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPY 613
LD + ++++ L + + T ++ R+ + + VI++ K+ + + EL P
Sbjct: 186 LDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPA 245
Query: 614 GAY 616
+
Sbjct: 246 DRF 248
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 89.0 bits (219), Expect = 1e-17, Method: Composition-based stats.
Identities = 66/232 (28%), Positives = 114/232 (49%), Gaps = 13/232 (5%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
IE V YP + + G I G + L+G SGSGK+T++ LI P G+V
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHXXXXXXXXXXXXXXXS 503
I G + + + + +GLV Q L ++ DN+++G
Sbjct: 73 WIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 504 HFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQ 563
F++ L++ +LSGGQ+QRVA+ARA+ P++LL DE +A+D++ R ++
Sbjct: 131 RFMR-----LESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELR 185
Query: 564 EALDRVM--INRTTVIVSH-RLSLIRNANIIAVIQQGKIVEKGTHSELLENP 612
+ +V + T+V V+H + + A+ + V+ +G + + GT E+ E P
Sbjct: 186 TFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237
Score = 72.4 bits (176), Expect = 1e-12, Method: Composition-based stats.
Identities = 62/236 (26%), Positives = 116/236 (49%), Gaps = 24/236 (10%)
Query: 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI 1070
++F+ V YP R + I G+ + L+G SGSGK+T++ L+ P+ G +
Sbjct: 15 IEFVGVEKIYPGGA--RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 1071 TLDGVEIQKLQVKWLRQQMGVVSQEPVLFSD-TIRANIA-----------EM-ANANGFI 1117
+ G + L + ++ +G+V Q LF T+ N++ EM A +
Sbjct: 73 WIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 1118 SGLQ-EGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDA 1176
++ E Y +LSGGQ+QRVA+ARA+ P++LL DE +A+D + R ++
Sbjct: 131 RFMRLESYANRFPH---ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTF 187
Query: 1177 LDQVMVDR--TTLVVAH-RLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTS 1229
+ QV + T++ V H + ++ A + V+ +G + + G+ E + ++ +
Sbjct: 188 VRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLFVA 243
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 114/222 (51%), Gaps = 30/222 (13%)
Query: 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462
L+ L + +G ++G +G+GK+ + LI F+ P +G +L+DG ++ + + +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHD 73
Query: 463 IGLVSQEPVLLSS-SIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKNLPQGLDTN----- 516
I V Q L +++ N+ +G IK+ + LDT
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKK----------------IKDPKRVLDTARDLKI 117
Query: 517 ---VGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-IN 572
+ + + LSGG++QRVA+ARA++ +P+ILLLDE SALD + +E L + N
Sbjct: 118 EHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN 177
Query: 573 RTTVI-VSHRLSLIR-NANIIAVIQQGKIVEKGTHSELLENP 612
+ TV+ ++H + R A+ IAV+ GK+++ G E+ E P
Sbjct: 178 KLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 101/202 (50%), Gaps = 17/202 (8%)
Query: 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090
+L L + G+ ++G +G+GK+ + L+ F+ P SG I LDG ++ L + + +
Sbjct: 18 NLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75
Query: 1091 VVSQEPVLFSD-TIRANIAEMANANGFISGLQEGYDT--------LVGERGVQLSGGQKQ 1141
V Q LF ++ N+ E I + DT L+ + LSGG++Q
Sbjct: 76 FVYQNYSLFPHMNVKKNL-EFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQ 134
Query: 1142 RVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHL 1201
RVA+ARA+V PKILLLDE SALD ++ ++ L V+ + L V H A +
Sbjct: 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREML-SVLHKKNKLTVLHITHDQTEARI 193
Query: 1202 ----IAVVSQGMIVEKGSHESL 1219
IAVV G +++ G E +
Sbjct: 194 MADRIAVVMDGKLIQVGKPEEI 215
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 85.9 bits (211), Expect = 1e-16, Method: Composition-based stats.
Identities = 75/229 (32%), Positives = 117/229 (51%), Gaps = 21/229 (9%)
Query: 385 IELKDVNFSYPARPDEQI---LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQA 441
I+LK+V +Y + E+I L L I G ++ G SGSGKST +++I P
Sbjct: 2 IKLKNVTKTY--KXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTE 59
Query: 442 GEVLIDGV---NLKEFQLKWIR-EKIGLVSQE----PVLLSSSIRDNIAYGKTHXXXXXX 493
GEV ID + +L + +L IR +KIG V Q+ P+L + +N+
Sbjct: 60 GEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL---TALENVELPLIFKYRGAX 116
Query: 494 XXXXXXXXXSHFIKNLPQGLDTNVGEHGI-QLSGGQKQRVAIARAMIKDPRILLLDEATS 552
+K L+ H QLSGGQ+QRVAIARA+ +P I+L DE T
Sbjct: 117 SGEERRKRALECLKXAE--LEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTG 174
Query: 553 ALDSESGRMVQEALDRV--MINRTTVIVSHRLSLIRNANIIAVIQQGKI 599
ALDS++G + + L ++ +T V+V+H +++ R I ++ G++
Sbjct: 175 ALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 73.9 bits (180), Expect = 5e-13, Method: Composition-based stats.
Identities = 57/207 (27%), Positives = 99/207 (47%), Gaps = 23/207 (11%)
Query: 1026 IEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ---- 1081
I +++ L I G+ +++ G SGSGKST ++++ P+ G + +D ++ L
Sbjct: 18 IYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDEL 77
Query: 1082 VKWLRQQMGVVSQE----PVLFSDTIRANIAEMANANGFISGLQ------------EGYD 1125
K R ++G V Q+ P+L + + + G SG + E +
Sbjct: 78 TKIRRDKIGFVFQQFNLIPLL-TALENVELPLIFKYRGAXSGEERRKRALECLKXAELEE 136
Query: 1126 TLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVD-- 1183
+ QLSGGQ+QRVAIARA+ P I+L DE T ALD ++ + L ++ +
Sbjct: 137 RFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDG 196
Query: 1184 RTTLVVAHRLSTIKNAHLIAVVSQGMI 1210
+T +VV H ++ + I + G +
Sbjct: 197 KTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 109/221 (49%), Gaps = 15/221 (6%)
Query: 389 DVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDG 448
+V+FS+ +L L I G + A+ G++GSGK++++ LI + G + G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 449 VNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKN 508
++ SQ ++ +I++NI +G ++ K
Sbjct: 100 -------------RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKF 146
Query: 509 LPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEA-LD 567
Q +T +GE G+ LSGGQ+ R+++ARA+ KD + LLD LD + V E+ +
Sbjct: 147 AEQD-NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 205
Query: 568 RVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSEL 608
++M N+T ++V+ ++ +R A+ I ++ QG GT SEL
Sbjct: 206 KLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 112/221 (50%), Gaps = 8/221 (3%)
Query: 1016 VSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV 1075
VSF + V +++ L I G+ +A+ G +GSGK++++ L+ + S G I G
Sbjct: 41 VSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR 100
Query: 1076 EIQKLQVKWLRQQMGVVSQEPVLFS---DTIR-ANIAEMANANGFISGLQEGYDTLVGER 1131
Q W+ M +E ++F D R ++ + I+ E +T++GE
Sbjct: 101 VSFCSQFSWI---MPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEG 157
Query: 1132 GVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDI-ESERVVQDALDQVMVDRTTLVVA 1190
GV LSGGQ+ R+++ARA+ K+ + LLD LD+ E+V + + ++M ++T ++V
Sbjct: 158 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 217
Query: 1191 HRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLI 1231
++ ++ A I ++ QG G+ L S + + L+
Sbjct: 218 SKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLM 258
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 109/221 (49%), Gaps = 15/221 (6%)
Query: 389 DVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDG 448
+V+FS+ +L L I G + A+ G++GSGK++++ LI + G + G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 449 VNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKN 508
++ SQ ++ +I++NI +G ++ K
Sbjct: 100 -------------RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKF 146
Query: 509 LPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEA-LD 567
Q +T +GE G+ LSGGQ+ R+++ARA+ KD + LLD LD + V E+ +
Sbjct: 147 AEQD-NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 205
Query: 568 RVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSEL 608
++M N+T ++V+ ++ +R A+ I ++ QG GT SEL
Sbjct: 206 KLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 112/221 (50%), Gaps = 8/221 (3%)
Query: 1016 VSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV 1075
VSF + V +++ L I G+ +A+ G +GSGK++++ L+ + S G I G
Sbjct: 41 VSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR 100
Query: 1076 EIQKLQVKWLRQQMGVVSQEPVLFS---DTIR-ANIAEMANANGFISGLQEGYDTLVGER 1131
Q W+ M +E ++F D R ++ + I+ E +T++GE
Sbjct: 101 VSFCSQFSWI---MPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEG 157
Query: 1132 GVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDI-ESERVVQDALDQVMVDRTTLVVA 1190
GV LSGGQ+ R+++ARA+ K+ + LLD LD+ E+V + + ++M ++T ++V
Sbjct: 158 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 217
Query: 1191 HRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLI 1231
++ ++ A I ++ QG G+ L S + + L+
Sbjct: 218 SKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLM 258
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 110/219 (50%), Gaps = 15/219 (6%)
Query: 399 DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKW 458
+++ L L+I G + G +GSGKST++ ++ +P +G+VL DG K ++
Sbjct: 21 EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE--- 77
Query: 459 IREKIGLVSQEPV--LLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKNLPQGLDTN 516
IR IG+ Q P + + D +A+ F+ GLD +
Sbjct: 78 IRRNIGIAFQYPEDQFFAERVFDEVAFA-VKNFYPDRDPVPLVKKAMEFV-----GLDFD 131
Query: 517 VGEHGIQ--LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDR-VMINR 573
+ + LSGG+K+RVAIA ++ +P IL+LDE LD E + +++ + +
Sbjct: 132 SFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGK 191
Query: 574 TTVIVSHRL-SLIRNANIIAVIQQGKIVEKGTHSELLEN 611
T +++SH + ++I + + + V+++GK V GT E LE
Sbjct: 192 TVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 230
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 115/230 (50%), Gaps = 36/230 (15%)
Query: 1008 MGEVQFLRVS--FKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP 1065
MG ++ + VS F T + ++ L I G+ + + G +GSGKST++ ++ +P
Sbjct: 2 MGRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP 61
Query: 1066 SSGHITLDGVEIQKLQVKWLRQQMGVVSQEPV--LFSDTI--------------RANIAE 1109
+SG + DG ++ + +R+ +G+ Q P F++ + R +
Sbjct: 62 TSGDVLYDG---ERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPL 118
Query: 1110 MANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIES 1169
+ A F+ GL +D+ LSGG+K+RVAIA IV EP IL+LDE LD E
Sbjct: 119 VKKAMEFV-GLD--FDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREG 175
Query: 1170 E----RVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGS 1215
+ R+V+ + +T ++++H + T+ N H+ VV ++EKG
Sbjct: 176 KTDLLRIVE---KWKTLGKTVILISHDIETVIN-HVDRVV----VLEKGK 217
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 110/219 (50%), Gaps = 15/219 (6%)
Query: 399 DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKW 458
+++ L L+I G + G +GSGKST++ ++ +P +G+VL DG K ++
Sbjct: 19 EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE--- 75
Query: 459 IREKIGLVSQEPV--LLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKNLPQGLDTN 516
IR IG+ Q P + + D +A+ F+ GLD +
Sbjct: 76 IRRNIGIAFQYPEDQFFAERVFDEVAFA-VKNFYPDRDPVPLVKKAMEFV-----GLDFD 129
Query: 517 VGEHGIQ--LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDR-VMINR 573
+ + LSGG+K+RVAIA ++ +P IL+LDE LD E + +++ + +
Sbjct: 130 SFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGK 189
Query: 574 TTVIVSHRL-SLIRNANIIAVIQQGKIVEKGTHSELLEN 611
T +++SH + ++I + + + V+++GK V GT E LE
Sbjct: 190 TVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 34/205 (16%)
Query: 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090
++ L I G+ + + G +GSGKST++ ++ +P+SG + DG ++ + +R+ +G
Sbjct: 25 NVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDG---ERKKGYEIRRNIG 81
Query: 1091 VVSQEPV--LFSDTI--------------RANIAEMANANGFISGLQEGYDTLVGERGVQ 1134
+ Q P F++ + R + + A F+ GL +D+
Sbjct: 82 IAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFV-GLD--FDSFKDRVPFF 138
Query: 1135 LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESE----RVVQDALDQVMVDRTTLVVA 1190
LSGG+K+RVAIA IV EP IL+LDE LD E + R+V+ + +T ++++
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVE---KWKTLGKTVILIS 195
Query: 1191 HRLSTIKNAHLIAVVSQGMIVEKGS 1215
H + T+ N V + +++EKG
Sbjct: 196 HDIETVINH-----VDRVVVLEKGK 215
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 113/235 (48%), Gaps = 33/235 (14%)
Query: 385 IELKDVNFSYPARPDEQI---LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQA 441
I+LK+V +Y + E+I L L I G +++G SGSGKST++++I P
Sbjct: 2 IKLKNVTKTY--KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTE 59
Query: 442 GEVLIDGV---NLKEFQLKWIR-EKIGLVSQ-----------EPVLLSSSIRDNIAYGKT 486
GEV ID + +L + +L IR +KIG V Q E V L + A
Sbjct: 60 GEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE 119
Query: 487 HXXXXXXXXXXXXXXXSHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILL 546
F + P QLSGGQ+QRVAIARA+ +P I+L
Sbjct: 120 ERRKRALECLKMAELEERFANHKPN-----------QLSGGQQQRVAIARALANNPPIIL 168
Query: 547 LDEATSALDSESGRMVQEALDRVMIN--RTTVIVSHRLSLIRNANIIAVIQQGKI 599
D+ T ALDS++G + + L ++ +T V+V+H +++ R I ++ G++
Sbjct: 169 ADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 102/207 (49%), Gaps = 23/207 (11%)
Query: 1026 IEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ---- 1081
I +++ L I G+ ++++G SGSGKST+++++ P+ G + +D ++ L
Sbjct: 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDEL 77
Query: 1082 VKWLRQQMGVVSQE----PVLFSDTIRANIAEMANANGFISG------------LQEGYD 1125
K R ++G V Q+ P+L + + + G +SG + E +
Sbjct: 78 TKIRRDKIGFVFQQFNLIPLLTA-LENVELPLIFKYRGAMSGEERRKRALECLKMAELEE 136
Query: 1126 TLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVD-- 1183
+ QLSGGQ+QRVAIARA+ P I+L D+ T ALD ++ + L ++ +
Sbjct: 137 RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDG 196
Query: 1184 RTTLVVAHRLSTIKNAHLIAVVSQGMI 1210
+T +VV H ++ + I + G +
Sbjct: 197 KTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 83.6 bits (205), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 108/221 (48%), Gaps = 15/221 (6%)
Query: 389 DVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDG 448
+V+FS+ +L L I G + A+ G++GSGK++++ LI + G + G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 449 VNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKN 508
++ SQ ++ +I++NI G ++ K
Sbjct: 100 -------------RVSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVKACQLQQDITKF 146
Query: 509 LPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEA-LD 567
Q +T +GE G+ LSGGQ+ R+++ARA+ KD + LLD LD + V E+ +
Sbjct: 147 AEQD-NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 205
Query: 568 RVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSEL 608
++M N+T ++V+ ++ +R A+ I ++ QG GT SEL
Sbjct: 206 KLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 110/220 (50%), Gaps = 6/220 (2%)
Query: 1016 VSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV 1075
VSF + V +++ L I G+ +A+ G +GSGK++++ L+ + S G I G
Sbjct: 41 VSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR 100
Query: 1076 EIQKLQVKWLRQQMGVVSQE---PVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERG 1132
Q W+ G + + V + + ++ + I+ E +T++GE G
Sbjct: 101 VSFCSQFSWIMP--GTIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG 158
Query: 1133 VQLSGGQKQRVAIARAIVKEPKILLLDEATSALDI-ESERVVQDALDQVMVDRTTLVVAH 1191
V LSGGQ+ R+++ARA+ K+ + LLD LD+ E+V + + ++M ++T ++V
Sbjct: 159 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS 218
Query: 1192 RLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLI 1231
++ ++ A I ++ QG G+ L S + + L+
Sbjct: 219 KMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLM 258
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 83.2 bits (204), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 108/221 (48%), Gaps = 15/221 (6%)
Query: 389 DVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDG 448
+V+FS+ +L L I G + A+ G++GSGK++++ LI + G + G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 449 VNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKN 508
++ SQ ++ +I++NI G ++ K
Sbjct: 100 -------------RVSFCSQFSWIMPGTIKENIIRGVSYDEYRYKSVVKACQLQQDITKF 146
Query: 509 LPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEA-LD 567
Q +T +GE G+ LSGGQ+ R+++ARA+ KD + LLD LD + V E+ +
Sbjct: 147 AEQD-NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 205
Query: 568 RVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSEL 608
++M N+T ++V+ ++ +R A+ I ++ QG GT SEL
Sbjct: 206 KLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 110/220 (50%), Gaps = 6/220 (2%)
Query: 1016 VSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV 1075
VSF + V +++ L I G+ +A+ G +GSGK++++ L+ + S G I G
Sbjct: 41 VSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR 100
Query: 1076 EIQKLQVKWLRQQMGVVSQ---EPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERG 1132
Q W+ G + + V + + ++ + I+ E +T++GE G
Sbjct: 101 VSFCSQFSWIMP--GTIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG 158
Query: 1133 VQLSGGQKQRVAIARAIVKEPKILLLDEATSALDI-ESERVVQDALDQVMVDRTTLVVAH 1191
V LSGGQ+ R+++ARA+ K+ + LLD LD+ E+V + + ++M ++T ++V
Sbjct: 159 VTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS 218
Query: 1192 RLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLI 1231
++ ++ A I ++ QG G+ L S + + L+
Sbjct: 219 KMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLM 258
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 83.2 bits (204), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 110/227 (48%), Gaps = 18/227 (7%)
Query: 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442
GD L NFS P +L I G + A+ G++G+GK++++ +I +P G
Sbjct: 37 GDDSLSFSNFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 93
Query: 443 EVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXX 502
++ G +I SQ ++ +I++NI G ++
Sbjct: 94 KIKHSG-------------RISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKACQLE 140
Query: 503 SHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMV 562
I + + +GE GI LSGGQ+ R+++ARA+ KD + LLD LD + + +
Sbjct: 141 ED-ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI 199
Query: 563 QEA-LDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSEL 608
E+ + ++M N+T ++V+ ++ ++ A+ I ++ +G GT SEL
Sbjct: 200 FESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 246
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 98/188 (52%), Gaps = 12/188 (6%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWL-- 1085
V +D+ I G+ +A+ G +G+GK++++ ++ +PS G I G Q W+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 112
Query: 1086 ----RQQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQ 1141
+ VS + + I+A E IS E + ++GE G+ LSGGQ+
Sbjct: 113 GTIKENIIAGVSYDEYRYRSVIKACQLEED-----ISKFAEKDNIVLGEGGITLSGGQRA 167
Query: 1142 RVAIARAIVKEPKILLLDEATSALDIESER-VVQDALDQVMVDRTTLVVAHRLSTIKNAH 1200
R+++ARA+ K+ + LLD LD+ +E+ + + + ++M ++T ++V ++ +K A
Sbjct: 168 RISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKAD 227
Query: 1201 LIAVVSQG 1208
I ++ +G
Sbjct: 228 KILILHEG 235
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 108/223 (48%), Gaps = 31/223 (13%)
Query: 387 LKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLI 446
LKD+NF I G + A+ G++G+GK++++ +I +P G++
Sbjct: 24 LKDINFK----------------IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH 67
Query: 447 DGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXSHFI 506
G +I SQ ++ +I++NI +G ++ I
Sbjct: 68 SG-------------RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEED-I 113
Query: 507 KNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEA- 565
+ + +GE GI LSGGQ+ R+++ARA+ KD + LLD LD + + + E+
Sbjct: 114 SKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 173
Query: 566 LDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSEL 608
+ ++M N+T ++V+ ++ ++ A+ I ++ +G GT SEL
Sbjct: 174 VCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 216
Score = 80.1 bits (196), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 100/186 (53%), Gaps = 8/186 (4%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087
V +D+ I G+ +A+ G +G+GK++++ ++ +PS G I G Q W+
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWI-- 80
Query: 1088 QMGVVSQEPVLFS---DTIR-ANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRV 1143
M +E ++F D R ++ + IS E + ++GE G+ LSGGQ+ R+
Sbjct: 81 -MPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARI 139
Query: 1144 AIARAIVKEPKILLLDEATSALDIESER-VVQDALDQVMVDRTTLVVAHRLSTIKNAHLI 1202
++ARA+ K+ + LLD LD+ +E+ + + + ++M ++T ++V ++ +K A I
Sbjct: 140 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKI 199
Query: 1203 AVVSQG 1208
++ +G
Sbjct: 200 LILHEG 205
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 113/235 (48%), Gaps = 33/235 (14%)
Query: 385 IELKDVNFSYPARPDEQI---LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQA 441
++LK+V +Y + E+I L L I G +++G SGSGKST++++I P
Sbjct: 2 VKLKNVTKTY--KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTE 59
Query: 442 GEVLIDGV---NLKEFQLKWIR-EKIGLVSQ-----------EPVLLSSSIRDNIAYGKT 486
GEV ID + +L + +L IR +KIG V Q E V L + A
Sbjct: 60 GEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE 119
Query: 487 HXXXXXXXXXXXXXXXSHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILL 546
F + P QLSGGQ+QRVAIARA+ +P I+L
Sbjct: 120 ERRKRALECLKMAELEERFANHKPN-----------QLSGGQQQRVAIARALANNPPIIL 168
Query: 547 LDEATSALDSESGRMVQEALDRVMIN--RTTVIVSHRLSLIRNANIIAVIQQGKI 599
D+ T ALDS++G + + L ++ +T V+V+H +++ R I ++ G++
Sbjct: 169 ADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 73.2 bits (178), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 102/207 (49%), Gaps = 23/207 (11%)
Query: 1026 IEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ---- 1081
I +++ L I G+ ++++G SGSGKST+++++ P+ G + +D ++ L
Sbjct: 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDEL 77
Query: 1082 VKWLRQQMGVVSQE----PVLFSDTIRANIAEMANANGFISG------------LQEGYD 1125
K R ++G V Q+ P+L + + + G +SG + E +
Sbjct: 78 TKIRRDKIGFVFQQFNLIPLLTA-LENVELPLIFKYRGAMSGEERRKRALECLKMAELEE 136
Query: 1126 TLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVD-- 1183
+ QLSGGQ+QRVAIARA+ P I+L D+ T ALD ++ + L ++ +
Sbjct: 137 RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDG 196
Query: 1184 RTTLVVAHRLSTIKNAHLIAVVSQGMI 1210
+T +VV H ++ + I + G +
Sbjct: 197 KTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 108/223 (48%), Gaps = 31/223 (13%)
Query: 387 LKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLI 446
LKD+NF I G + A+ G++G+GK++++ +I +P G++
Sbjct: 36 LKDINFK----------------IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH 79
Query: 447 DGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXSHFI 506
G +I SQ ++ +I++NI +G ++ I
Sbjct: 80 SG-------------RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEED-I 125
Query: 507 KNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEA- 565
+ + +GE GI LSGGQ+ R+++ARA+ KD + LLD LD + + + E+
Sbjct: 126 SKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 185
Query: 566 LDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSEL 608
+ ++M N+T ++V+ ++ ++ A+ I ++ +G GT SEL
Sbjct: 186 VCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 228
Score = 80.1 bits (196), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 100/186 (53%), Gaps = 8/186 (4%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087
V +D+ I G+ +A+ G +G+GK++++ ++ +PS G I G Q W+
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWI-- 92
Query: 1088 QMGVVSQEPVLFS---DTIR-ANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRV 1143
M +E ++F D R ++ + IS E + ++GE G+ LSGGQ+ R+
Sbjct: 93 -MPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARI 151
Query: 1144 AIARAIVKEPKILLLDEATSALDIESER-VVQDALDQVMVDRTTLVVAHRLSTIKNAHLI 1202
++ARA+ K+ + LLD LD+ +E+ + + + ++M ++T ++V ++ +K A I
Sbjct: 152 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKI 211
Query: 1203 AVVSQG 1208
++ +G
Sbjct: 212 LILHEG 217
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 100/187 (53%), Gaps = 11/187 (5%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWL-- 1085
V +D+ I G+ +A+ G +G+GK++++ ++ +PS G I G Q W+
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 82
Query: 1086 ---RQQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQR 1142
++ + VS + + I+A E IS E + ++GE G+ LSGGQ+ R
Sbjct: 83 GTIKENIIGVSYDEYRYRSVIKACQLEED-----ISKFAEKDNIVLGEGGITLSGGQRAR 137
Query: 1143 VAIARAIVKEPKILLLDEATSALDIESER-VVQDALDQVMVDRTTLVVAHRLSTIKNAHL 1201
+++ARA+ K+ + LLD LD+ +E+ + + + ++M ++T ++V ++ +K A
Sbjct: 138 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADK 197
Query: 1202 IAVVSQG 1208
I ++ +G
Sbjct: 198 ILILHEG 204
Score = 76.3 bits (186), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 107/223 (47%), Gaps = 32/223 (14%)
Query: 387 LKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLI 446
LKD+NF I G + A+ G++G+GK++++ +I +P G++
Sbjct: 24 LKDINFK----------------IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH 67
Query: 447 DGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXSHFI 506
G +I SQ ++ +I++NI G ++ I
Sbjct: 68 SG-------------RISFCSQFSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEED-I 112
Query: 507 KNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEA- 565
+ + +GE GI LSGGQ+ R+++ARA+ KD + LLD LD + + + E+
Sbjct: 113 SKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 172
Query: 566 LDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSEL 608
+ ++M N+T ++V+ ++ ++ A+ I ++ +G GT SEL
Sbjct: 173 VCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 215
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 100/187 (53%), Gaps = 11/187 (5%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWL-- 1085
V +D+ I G+ +A+ G +G+GK++++ ++ +PS G I G Q W+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMP 112
Query: 1086 ---RQQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQR 1142
++ + VS + + I+A E IS E + ++GE G+ LSGGQ+ R
Sbjct: 113 GTIKENIIGVSYDEYRYRSVIKACQLEED-----ISKFAEKDNIVLGEGGITLSGGQRAR 167
Query: 1143 VAIARAIVKEPKILLLDEATSALDIESER-VVQDALDQVMVDRTTLVVAHRLSTIKNAHL 1201
+++ARA+ K+ + LLD LD+ +E+ + + + ++M ++T ++V ++ +K A
Sbjct: 168 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADK 227
Query: 1202 IAVVSQG 1208
I ++ +G
Sbjct: 228 ILILHEG 234
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442
GD L NFS P +L I G + A+ G++G+GK++++ +I +P G
Sbjct: 37 GDDSLFFSNFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 93
Query: 443 EVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXX 502
++ G +I SQ ++ +I++NI G ++
Sbjct: 94 KIKHSG-------------RISFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLE 139
Query: 503 SHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMV 562
I + + +GE GI LSGGQ+ R+++ARA+ KD + LLD LD + + +
Sbjct: 140 ED-ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI 198
Query: 563 QEA-LDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSEL 608
E+ + ++M N+T ++V+ ++ ++ A+ I ++ +G GT SEL
Sbjct: 199 FESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 100/187 (53%), Gaps = 11/187 (5%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWL-- 1085
V +D+ I G+ +A+ G +G+GK++++ ++ +PS G I G Q W+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMP 112
Query: 1086 ---RQQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQR 1142
++ + VS + + I+A E IS E + ++GE G+ LSGGQ+ R
Sbjct: 113 GTIKENIIGVSYDEYRYRSVIKACQLEED-----ISKFAEKDNIVLGEGGITLSGGQRAR 167
Query: 1143 VAIARAIVKEPKILLLDEATSALDIESER-VVQDALDQVMVDRTTLVVAHRLSTIKNAHL 1201
+++ARA+ K+ + LLD LD+ +E+ + + + ++M ++T ++V ++ +K A
Sbjct: 168 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADK 227
Query: 1202 IAVVSQG 1208
I ++ +G
Sbjct: 228 ILILHEG 234
Score = 80.1 bits (196), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442
GD L NFS P +L I G + A+ G++G+GK++++ +I +P G
Sbjct: 37 GDDSLSFSNFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 93
Query: 443 EVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXX 502
++ G +I SQ ++ +I++NI G ++
Sbjct: 94 KIKHSG-------------RISFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLE 139
Query: 503 SHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMV 562
I + + +GE GI LSGGQ+ R+++ARA+ KD + LLD LD + + +
Sbjct: 140 ED-ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI 198
Query: 563 QEA-LDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSEL 608
E+ + ++M N+T ++V+ ++ ++ A+ I ++ +G GT SEL
Sbjct: 199 FESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 80.1 bits (196), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 114/226 (50%), Gaps = 30/226 (13%)
Query: 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWI--- 459
L+ + I NG ++G SG+GK+T + +I P GE+ D L K I
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDD-RLVASNGKLIVPP 79
Query: 460 -REKIGLVSQEPVLLSS-SIRDNIAYGKTHXXXXXXXXXXXXXXXS------HFIKNLPQ 511
KIG+V Q L + + +NIA+ T+ + H + + P+
Sbjct: 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPR 139
Query: 512 GLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDS---ESGR-MVQEALD 567
+LSGGQ+QRVA+ARA++KDP +LLLDE S LD+ +S R +V+E
Sbjct: 140 -----------ELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 568 RVMINRTTVIVSHRLS-LIRNANIIAVIQQGKIVEKGTHSELLENP 612
R+ + T ++VSH + + A+ + V+ +GK+V+ G +L +NP
Sbjct: 189 RLGV--TLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 106/207 (51%), Gaps = 19/207 (9%)
Query: 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQ---KLQVKWLRQ 1087
++ + I G+ ++G SG+GK+T + ++ PS+G + D + KL V +
Sbjct: 23 NVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82
Query: 1088 QMGVVSQEPVLFSD-TIRANIA----EMANANGFISGLQEGYDTLVGERGV------QLS 1136
++G+V Q L+ + T NIA M + I E ++ V +LS
Sbjct: 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELS 142
Query: 1137 GGQKQRVAIARAIVKEPKILLLDEATSALDI---ESERVVQDALDQVMVDRTTLVVAHRL 1193
GGQ+QRVA+ARA+VK+P +LLLDE S LD +S R + + Q + T LVV+H
Sbjct: 143 GGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEV-QSRLGVTLLVVSHDP 201
Query: 1194 STI-KNAHLIAVVSQGMIVEKGSHESL 1219
+ I A + V+ +G +V+ G E L
Sbjct: 202 ADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 79.7 bits (195), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 106/232 (45%), Gaps = 15/232 (6%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
IEL V+F Y + +L G I +VG +GSGK+T++ ++ AGE+
Sbjct: 12 IELNSVSFRYNG---DYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEI 67
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPV--LLSSSIRDNIAYGKTHXXXXXXXXXXXXXXX 502
+DG F L R+ +G V Q P ++ +++ +++A+
Sbjct: 68 FLDGSPADPFLL---RKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKV 124
Query: 503 SHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMV 562
+ GL + LSGGQKQR+AIA + +D R L LDE S LD S R +
Sbjct: 125 LELV-----GLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREI 179
Query: 563 QEALDRVMIN-RTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPY 613
+ L+ + + ++V+H L + + + I I G I G+ E +E +
Sbjct: 180 FQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVEREF 231
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 105/228 (46%), Gaps = 24/228 (10%)
Query: 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI 1070
++ VSF+Y V +D+ GK +VG++GSGK+T++ +L ++G I
Sbjct: 12 IELNSVSFRYNGD---YVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEI 67
Query: 1071 TLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQE-------- 1122
LDG LR+ +G V Q P S I A + E + I GL E
Sbjct: 68 FLDGSPADPFL---LRKNVGYVFQNPS--SQIIGATVEEDVAFSLEIMGLDESEMRKRIK 122
Query: 1123 ------GYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDA 1176
G L + LSGGQKQR+AIA + ++ + L LDE S LD S+R +
Sbjct: 123 KVLELVGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQV 182
Query: 1177 LDQVMVD-RTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTK 1223
L+ + + + ++V H L + + I +S G I GS E + +
Sbjct: 183 LESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVERE 230
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 112/222 (50%), Gaps = 11/222 (4%)
Query: 1016 VSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV 1075
VSF + V +++ L I G+ +A+ G +GSGK++++ L+ + S G I G
Sbjct: 41 VSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR 100
Query: 1076 EIQKLQVKWL-----RQQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGE 1130
Q W+ ++ + VS + + ++A + I+ E +T++GE
Sbjct: 101 VSFCSQFSWIMPGTIKENIIGVSYDEYRYKSVVKACQLQQD-----ITKFAEQDNTVLGE 155
Query: 1131 RGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDI-ESERVVQDALDQVMVDRTTLVV 1189
GV LSGGQ+ R+++ARA+ K+ + LLD LD+ E+V + + ++M ++T ++V
Sbjct: 156 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILV 215
Query: 1190 AHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLI 1231
++ ++ A I ++ QG G+ L S + + L+
Sbjct: 216 TSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLM 257
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 108/221 (48%), Gaps = 16/221 (7%)
Query: 389 DVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDG 448
+V+FS+ +L L I G + A+ G++GSGK++++ LI + G + G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 449 VNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKN 508
++ SQ ++ +I++NI G ++ K
Sbjct: 100 -------------RVSFCSQFSWIMPGTIKENII-GVSYDEYRYKSVVKACQLQQDITKF 145
Query: 509 LPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEA-LD 567
Q +T +GE G+ LSGGQ+ R+++ARA+ KD + LLD LD + V E+ +
Sbjct: 146 AEQD-NTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 204
Query: 568 RVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSEL 608
++M N+T ++V+ ++ +R A+ I ++ QG GT SEL
Sbjct: 205 KLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 245
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 110/217 (50%), Gaps = 11/217 (5%)
Query: 402 ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNL--KEFQLKWI 459
+LN L + G I ++G SG GK+T++ + F P +GE+ + G + K L
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78
Query: 460 REKIGLVSQEPVLLSS-SIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKNLPQGLDTNVG 518
++G + QE VL ++ NIAYG + G+ G
Sbjct: 79 ERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELT-----GISELAG 133
Query: 519 EHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTV 576
+ +LSGGQ+QR A+ARA+ DP ++LLDE SALD + R ++E + + ++ V
Sbjct: 134 RYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAV 193
Query: 577 IVSH-RLSLIRNANIIAVIQQGKIVEKGTHSELLENP 612
VSH R ++ A+ IAV++QG+I++ + EL P
Sbjct: 194 FVSHDREEALQYADRIAVMKQGRILQTASPHELYRQP 230
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 113/208 (54%), Gaps = 16/208 (7%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEI--QKLQVKWL 1085
V D+ L++ PG+ + ++G SG GK+T++ L F P SG I+L G I + +
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78
Query: 1086 RQQMGVVSQEPVLFSD-TIRANIAE-MANANGFISGLQE---------GYDTLVGERGVQ 1134
+++G + QE VLF T+ NIA + N G + ++ G L G +
Sbjct: 79 ERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHE 138
Query: 1135 LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAH- 1191
LSGGQ+QR A+ARA+ +P+++LLDE SALD + R +++ + + ++ + V+H
Sbjct: 139 LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHD 198
Query: 1192 RLSTIKNAHLIAVVSQGMIVEKGSHESL 1219
R ++ A IAV+ QG I++ S L
Sbjct: 199 REEALQYADRIAVMKQGRILQTASPHEL 226
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 117/234 (50%), Gaps = 25/234 (10%)
Query: 404 NGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQ----AGEVLIDGVNL---KEFQL 456
+G L I ++ A+VG S SGKST+I + + P +G VL G +L +E +L
Sbjct: 25 DGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEEL 84
Query: 457 KWIREK-IGLVSQ------EPVL-LSSSIRDNI-AYGKTHXXXXXXXXXXXXXXXSHFIK 507
+ IR K I LV Q P + + +D + A+G S ++
Sbjct: 85 RKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHG------VRWSHSELIEKASEKLR 138
Query: 508 NLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDS-ESGRMVQEAL 566
+ + + + +QLSGG KQRV IA A++ DP +L+LDE TSALD ++Q
Sbjct: 139 MVRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLK 198
Query: 567 DRVMINRTTVI-VSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENPYGAYNR 618
+ + + T+I V+H +++ A+ +AVI G +VE + ++ +NP Y R
Sbjct: 199 ELKKMLKITLIFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQIFKNPLHPYTR 252
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 106/201 (52%), Gaps = 28/201 (13%)
Query: 1043 ALVGESGSGKSTVISLLQRFYDPS----SGHITLDGVEIQKLQVKWLRQ----QMGVVSQ 1094
A+VGES SGKST+I + + P+ SG + G ++ ++ + LR+ ++ +V Q
Sbjct: 38 AIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRKIRWKEIALVPQ 97
Query: 1095 ------EPVL-----FSDTIRANIAEMAN------ANGFISGLQEGYDTLVGERGVQLSG 1137
P + F DT+ A+ ++ A+ + ++ + ++ +QLSG
Sbjct: 98 AAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRLNPEAVLNSYPLQLSG 157
Query: 1138 GQKQRVAIARAIVKEPKILLLDEATSALDIESE-RVVQDALDQVMVDRTTLV-VAHRLST 1195
G KQRV IA A++ +P +L+LDE TSALD+ ++ ++Q + + + TL+ V H ++
Sbjct: 158 GMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFVTHDIAV 217
Query: 1196 IKN-AHLIAVVSQGMIVEKGS 1215
A +AV+ G +VE S
Sbjct: 218 AAELADKVAVIYGGNLVEYNS 238
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 113/226 (50%), Gaps = 30/226 (13%)
Query: 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWI--- 459
L+ + I NG ++G SG+GK+T + +I P GE+ D L K I
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDD-RLVASNGKLIVPP 79
Query: 460 -REKIGLVSQEPVLLSS-SIRDNIAYGKTHXXXXXXXXXXXXXXXS------HFIKNLPQ 511
KIG+V Q L + + +NIA+ T+ + H + + P+
Sbjct: 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPR 139
Query: 512 GLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDS---ESGR-MVQEALD 567
+LSG Q+QRVA+ARA++KDP +LLLDE S LD+ +S R +V+E
Sbjct: 140 -----------ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 568 RVMINRTTVIVSHRLS-LIRNANIIAVIQQGKIVEKGTHSELLENP 612
R+ + T ++VSH + + A+ + V+ +GK+V+ G +L +NP
Sbjct: 189 RLGV--TLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 105/207 (50%), Gaps = 19/207 (9%)
Query: 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQ---KLQVKWLRQ 1087
++ + I G+ ++G SG+GK+T + ++ PS+G + D + KL V +
Sbjct: 23 NVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82
Query: 1088 QMGVVSQEPVLFSD-TIRANIA----EMANANGFISGLQEGYDTLVGERGV------QLS 1136
++G+V Q L+ + T NIA M + I E ++ V +LS
Sbjct: 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELS 142
Query: 1137 GGQKQRVAIARAIVKEPKILLLDEATSALDI---ESERVVQDALDQVMVDRTTLVVAHRL 1193
G Q+QRVA+ARA+VK+P +LLLDE S LD +S R + + Q + T LVV+H
Sbjct: 143 GAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEV-QSRLGVTLLVVSHDP 201
Query: 1194 STI-KNAHLIAVVSQGMIVEKGSHESL 1219
+ I A + V+ +G +V+ G E L
Sbjct: 202 ADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 126/254 (49%), Gaps = 36/254 (14%)
Query: 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLK-------- 452
++L G L G + +++G+SGSGKST + I P G ++++G N+
Sbjct: 20 EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQ 79
Query: 453 -----EFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHXXXXXXXXXXXXXXXSHFI 506
+ QL+ +R ++ +V Q L S ++ +N+ +
Sbjct: 80 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERA-----L 134
Query: 507 KNLPQ-GLDTNV-GEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQE 564
K L + G+D G++ + LSGGQ+QRV+IARA+ +P +LL DE TSALD E +V E
Sbjct: 135 KYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE---LVGE 191
Query: 565 ALDRVMIN-----RTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENPYGAYNR 618
L R+M +T V+V+H + R+ ++ + + QGKI E+G ++ NP
Sbjct: 192 VL-RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSP--- 247
Query: 619 LIRLQETCKESEKS 632
RLQ+ K S K
Sbjct: 248 --RLQQFLKGSLKK 259
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 111/223 (49%), Gaps = 30/223 (13%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQ-------- 1078
EV + + L G I+++G SGSGKST + + PS G I ++G I
Sbjct: 20 EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQ 79
Query: 1079 -----KLQVKWLRQQMGVVSQEPVLFSD-TIRANIAE-------MANANGFISGLQEGYD 1125
K Q++ LR ++ +V Q L+S T+ N+ E ++ + L+
Sbjct: 80 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAK 139
Query: 1126 TLVGERG-----VQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQV 1180
+ ER V LSGGQ+QRV+IARA+ EP +LL DE TSALD E V + Q+
Sbjct: 140 VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQL 199
Query: 1181 MVD-RTTLVVAHRLSTIKN--AHLIAVVSQGMIVEKGSHESLI 1220
+ +T +VV H + ++ +H+I + QG I E+G E +
Sbjct: 200 AEEGKTMVVVTHEMGFARHVSSHVI-FLHQGKIEEEGDPEQVF 241
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 76.3 bits (186), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 107/223 (47%), Gaps = 31/223 (13%)
Query: 387 LKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLI 446
LKD+NF I G + A+ G++G+GK++++ +I +P G++
Sbjct: 54 LKDINFK----------------IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH 97
Query: 447 DGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXSHFI 506
G +I SQ ++ +I++NI +G ++ I
Sbjct: 98 SG-------------RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEED-I 143
Query: 507 KNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEA- 565
+ + +GE GI LS GQ+ ++++ARA+ KD + LLD LD + + + E+
Sbjct: 144 SKFAEKDNIVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 203
Query: 566 LDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSEL 608
+ ++M N+T ++V+ ++ ++ A+ I ++ +G GT SEL
Sbjct: 204 VCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 246
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 99/186 (53%), Gaps = 8/186 (4%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087
V +D+ I G+ +A+ G +G+GK++++ ++ +PS G I G Q W+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWI-- 110
Query: 1088 QMGVVSQEPVLFS---DTIR-ANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRV 1143
M +E ++F D R ++ + IS E + ++GE G+ LS GQ+ ++
Sbjct: 111 -MPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKI 169
Query: 1144 AIARAIVKEPKILLLDEATSALDIESER-VVQDALDQVMVDRTTLVVAHRLSTIKNAHLI 1202
++ARA+ K+ + LLD LD+ +E+ + + + ++M ++T ++V ++ +K A I
Sbjct: 170 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKI 229
Query: 1203 AVVSQG 1208
++ +G
Sbjct: 230 LILHEG 235
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With
Atp
Length = 290
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 99/187 (52%), Gaps = 11/187 (5%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWL-- 1085
V +D+ I G+ +A+ G +G+GK++++ ++ +PS G I G Q W+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 112
Query: 1086 ---RQQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQR 1142
++ + VS + + I+A E IS E + ++GE G+ LS GQ+ +
Sbjct: 113 GTIKENIIGVSYDEYRYRSVIKACQLEED-----ISKFAEKDNIVLGEGGITLSEGQQAK 167
Query: 1143 VAIARAIVKEPKILLLDEATSALDIESER-VVQDALDQVMVDRTTLVVAHRLSTIKNAHL 1201
+++ARA+ K+ + LLD LD+ +E+ + + + ++M ++T ++V ++ +K A
Sbjct: 168 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADK 227
Query: 1202 IAVVSQG 1208
I ++ +G
Sbjct: 228 ILILHEG 234
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 106/223 (47%), Gaps = 32/223 (14%)
Query: 387 LKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLI 446
LKD+NF I G + A+ G++G+GK++++ +I +P G++
Sbjct: 54 LKDINFK----------------IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH 97
Query: 447 DGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXSHFI 506
G +I SQ ++ +I++NI G ++ I
Sbjct: 98 SG-------------RISFCSQFSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEED-I 142
Query: 507 KNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEA- 565
+ + +GE GI LS GQ+ ++++ARA+ KD + LLD LD + + + E+
Sbjct: 143 SKFAEKDNIVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 202
Query: 566 LDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSEL 608
+ ++M N+T ++V+ ++ ++ A+ I ++ +G GT SEL
Sbjct: 203 VCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter
Length = 372
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 106/214 (49%), Gaps = 20/214 (9%)
Query: 1032 LCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGV 1091
L LTI G+ + L+G SG GK+T + ++ +P+ G I ++ L K + + +
Sbjct: 30 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISM 87
Query: 1092 VSQEPVLFSD-TIRANIAEMANANGFISG------------LQEGYDTLVGERGVQLSGG 1138
V Q ++ T+ NIA F LQ + L+ QLSGG
Sbjct: 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQ--IEELLNRYPAQLSGG 145
Query: 1139 QKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM--VDRTTLVVAH-RLST 1195
Q+QRVA+ARAIV EP +LL+DE S LD + ++ + ++ + TT+ V H ++
Sbjct: 146 QRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEA 205
Query: 1196 IKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTS 1229
+ IAV+++G +++ GS + N ++ +
Sbjct: 206 MTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVA 239
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 107/218 (49%), Gaps = 11/218 (5%)
Query: 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462
+N L I +G L+G SG GK+T + +I +P G + ++ K
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRN 84
Query: 463 IGLVSQE-PVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKNLPQGLDTNVGEHG 521
I +V Q V ++ +NIA+ + ++ ++ + +
Sbjct: 85 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQ-----IEELLNRYP 139
Query: 522 IQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVS 579
QLSGGQ+QRVA+ARA++ +P +LL+DE S LD++ ++ + ++ + TT+ V+
Sbjct: 140 AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVT 199
Query: 580 H-RLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAY 616
H ++ + + IAV+ +G++++ G+ +E+ P +
Sbjct: 200 HDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 237
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 121/243 (49%), Gaps = 36/243 (14%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
++++++N++Y L G + I G + A++G +G GKST+ P +G +
Sbjct: 8 LKVEELNYNYSD--GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 445 LIDG--VNLKEFQLKWIREKIGLVSQEP--VLLSSSIRDNIAYGKTHXXXXXXXXXXXXX 500
L D ++ + +RE IG+V Q+P L S+S+ ++++G +
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPE-------- 117
Query: 501 XXSHFIKNLPQGLDTNVGEHGIQ---------LSGGQKQRVAIARAMIKDPRILLLDEAT 551
+ + +D + GI+ LS GQK+RVAIA ++ +P++L+LDE T
Sbjct: 118 ------DEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPT 171
Query: 552 SALD----SESGRMVQEALDRVMINRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHS 606
+ LD SE +++ E + I T +I +H + ++ + + V+++G+++ +G
Sbjct: 172 AGLDPMGVSEIMKLLVEMQKELGI--TIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPK 229
Query: 607 ELL 609
E+
Sbjct: 230 EVF 232
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 94/178 (52%), Gaps = 18/178 (10%)
Query: 1003 TLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRF 1062
+LE+ + +V+ L ++ Y H + + + I G+ A++G +G GKST+
Sbjct: 2 SLEDYILKVEEL--NYNYSDGTH--ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGI 57
Query: 1063 YDPSSGHITLDG--VEIQKLQVKWLRQQMGVVSQEP--VLFSDTIRANIAEMA-NANGFI 1117
PSSG I D ++ + + LR+ +G+V Q+P LFS ++ +++ A N
Sbjct: 58 LKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPE 117
Query: 1118 SGLQEGYDTLVGERGVQ---------LSGGQKQRVAIARAIVKEPKILLLDEATSALD 1166
+++ D + G++ LS GQK+RVAIA +V EPK+L+LDE T+ LD
Sbjct: 118 DEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLD 175
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar
Transporter From Pyrococcus Horikoshii Ot3 Complexed With
Atp
Length = 373
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 105/214 (49%), Gaps = 20/214 (9%)
Query: 1032 LCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGV 1091
L LTI G+ + L+G SG GK+T + ++ +P+ G I ++ L K + + +
Sbjct: 31 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISM 88
Query: 1092 VSQEPVLFSD-TIRANIAEMANANGFISG------------LQEGYDTLVGERGVQLSGG 1138
V Q ++ T+ NIA F LQ + L+ QLSGG
Sbjct: 89 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQ--IEELLNRYPAQLSGG 146
Query: 1139 QKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALD--QVMVDRTTLVVAH-RLST 1195
Q+QRVA+ARAIV EP +LL+DE S LD + ++ + Q + TT+ V H ++
Sbjct: 147 QRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEA 206
Query: 1196 IKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTS 1229
+ IAV+++G +++ GS + N ++ +
Sbjct: 207 MTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVA 240
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 107/218 (49%), Gaps = 11/218 (5%)
Query: 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462
+N L I +G L+G SG GK+T + +I +P G + ++ K
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRN 85
Query: 463 IGLVSQE-PVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKNLPQGLDTNVGEHG 521
I +V Q V ++ +NIA+ + ++ ++ + +
Sbjct: 86 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQ-----IEELLNRYP 140
Query: 522 IQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVS 579
QLSGGQ+QRVA+ARA++ +P +LL+DE S LD++ ++ + ++ + TT+ V+
Sbjct: 141 AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVT 200
Query: 580 H-RLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAY 616
H ++ + + IAV+ +G++++ G+ +E+ P +
Sbjct: 201 HDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 238
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 74.3 bits (181), Expect = 4e-13, Method: Composition-based stats.
Identities = 58/201 (28%), Positives = 98/201 (48%), Gaps = 16/201 (7%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWL- 1085
E+ + + L++ G+ ++++G SGSGKST++ +L P+ G + L+G E+ K L
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELS 77
Query: 1086 ---RQQMGVVSQEPVLFSD--TIRANIAEMANANGFISGLQEGYDTLVGERGV------- 1133
+++G V Q L + + I M +E + L+ E G+
Sbjct: 78 LLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRK 137
Query: 1134 --QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLV-VA 1190
+LSGG++QRVAIARA+ EP +L DE T LD + + V D ++ T++V V
Sbjct: 138 PYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVT 197
Query: 1191 HRLSTIKNAHLIAVVSQGMIV 1211
H + H + G +V
Sbjct: 198 HERELAELTHRTLEMKDGKVV 218
Score = 73.2 bits (178), Expect = 8e-13, Method: Composition-based stats.
Identities = 62/212 (29%), Positives = 99/212 (46%), Gaps = 23/212 (10%)
Query: 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDG-----VNLKEFQ 455
+IL G L + G +++G SGSGKST++ ++ P G+V ++G N KE
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELS 77
Query: 456 LKWIREKIGLVSQ------EPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKNL 509
L R K+G V Q E L + I + GK + + L
Sbjct: 78 LLRNR-KLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERG--------EYLLSEL 128
Query: 510 PQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRV 569
GL + +LSGG++QRVAIARA+ +P +L DE T LDS + + V + ++
Sbjct: 129 --GLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKI 186
Query: 570 MINRTTVI-VSHRLSLIRNANIIAVIQQGKIV 600
T+++ V+H L + ++ GK+V
Sbjct: 187 NEGGTSIVMVTHERELAELTHRTLEMKDGKVV 218
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 104/210 (49%), Gaps = 22/210 (10%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV-------EIQK 1079
E+ + + I G+ L+G +G+GK+T + ++ PSSG +T+ G E++K
Sbjct: 29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRK 88
Query: 1080 LQVKWLRQQMGVVSQEPVL--------FSDTIRANIAEMANANGFISGLQEGYDTLVGER 1131
L + +L ++ G + F + + I EM I+GL E + +R
Sbjct: 89 L-ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEK----IKDR 143
Query: 1132 GVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVD-RTTLVVA 1190
S G +++ IARA++ P++ +LDE TS LD+ + R V+ L Q + T LV +
Sbjct: 144 VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSS 203
Query: 1191 HRLSTIKN-AHLIAVVSQGMIVEKGSHESL 1219
H + ++ IA++ G IVE G+ E L
Sbjct: 204 HNMLEVEFLCDRIALIHNGTIVETGTVEEL 233
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 109/239 (45%), Gaps = 20/239 (8%)
Query: 400 EQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWI 459
++IL G I G I L+G +G+GK+T + +I P +G V + G N+ E + +
Sbjct: 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEV 86
Query: 460 REKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKNLPQ------GL 513
R+ I + +E AY S I+ + + GL
Sbjct: 87 RKLISYLPEEAG----------AYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGL 136
Query: 514 DTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINR 573
+ + S G +++ IARA++ +PR+ +LDE TS LD + R V++ L +
Sbjct: 137 GEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG 196
Query: 574 TTVIVS--HRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQETCKESE 630
T++VS + L + + IA+I G IVE GT EL E Y A N +E K SE
Sbjct: 197 LTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER-YKAQNIEEVFEEVVKCSE 254
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
Length = 266
Score = 69.7 bits (169), Expect = 9e-12, Method: Composition-based stats.
Identities = 62/214 (28%), Positives = 104/214 (48%), Gaps = 18/214 (8%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087
+ D+ L I G+ +A++G +G+GKST++ LL + PS G L G + Q K L +
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85
Query: 1088 QMGVVSQE-----PVLFSDTIRANIAEMANANG--FISGLQEGYDTL-VGERGVQ-LSGG 1138
V+ Q P S+ I+ A + + + D L + +R + LSGG
Sbjct: 86 TRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGG 145
Query: 1139 QKQRVAIARAIVK------EPKILLLDEATSALDIESERVVQDALDQVMVDRTTLV--VA 1190
++QRV +AR + + P+ L LDE TSALD+ ++ L Q+ V V
Sbjct: 146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVL 205
Query: 1191 HRLSTIK-NAHLIAVVSQGMIVEKGSHESLISTK 1223
H L+ A I +++QG +V G+ E +++ +
Sbjct: 206 HDLNLAALYADRIMLLAQGKLVACGTPEEVLNAE 239
Score = 67.4 bits (163), Expect = 4e-11, Method: Composition-based stats.
Identities = 64/220 (29%), Positives = 100/220 (45%), Gaps = 17/220 (7%)
Query: 400 EQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWI 459
+ ++N L I +G + A++G +G+GKST++ L+ + P GE + G NL +Q K +
Sbjct: 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKAL 83
Query: 460 REKIGLVSQEPVL-LSSSIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKNLPQGLDTNVG 518
++ Q L S+ + I G+ L Q D V
Sbjct: 84 ARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQ-RDYRV- 141
Query: 519 EHGIQLSGGQKQRVAIARAMIK------DPRILLLDEATSALDSESGRMVQEALDRVMIN 572
LSGG++QRV +AR + + PR L LDE TSALD + L ++
Sbjct: 142 -----LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ 196
Query: 573 RTTVI--VSHRLSLIR-NANIIAVIQQGKIVEKGTHSELL 609
+ V H L+L A+ I ++ QGK+V GT E+L
Sbjct: 197 EPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 101/212 (47%), Gaps = 26/212 (12%)
Query: 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITL---------DGVEIQK- 1079
R++ L + G+ + L+G SG GK+T + ++ +PS G I + G+ +
Sbjct: 20 REMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79
Query: 1080 -------LQVKWLRQQMGVVSQ--EPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGE 1130
Q L M V P+ R I + + GL E L+
Sbjct: 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTE----LLNR 135
Query: 1131 RGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALD--QVMVDRTTLV 1188
+ +LSGGQ+QRVA+ RAIV++P++ L+DE S LD + ++ L Q + TT+
Sbjct: 136 KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIY 195
Query: 1189 VAH-RLSTIKNAHLIAVVSQGMIVEKGSHESL 1219
V H ++ + IAV+++G++ + GS + +
Sbjct: 196 VTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 103/219 (47%), Gaps = 15/219 (6%)
Query: 407 CLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWI-----RE 461
L + +G L+G SG GK+T + +I +P G++ I G L K I
Sbjct: 23 SLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI-GDKLVADPEKGIFVPPKDR 81
Query: 462 KIGLVSQEPVLLSS-SIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKNLPQGLDTNVGEH 520
I +V Q L ++ DNIA+ + + GL +
Sbjct: 82 DIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELL-----GLTELLNRK 136
Query: 521 GIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRV--MINRTTVIV 578
+LSGGQ+QRVA+ RA+++ P++ L+DE S LD++ ++ L ++ + TT+ V
Sbjct: 137 PRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYV 196
Query: 579 SH-RLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAY 616
+H ++ + + IAV+ +G + + G+ E+ + P +
Sbjct: 197 THDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTF 235
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 102/213 (47%), Gaps = 9/213 (4%)
Query: 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWI-RE 461
+ G L +P G I L+G +G+GK+T +S I Q G+++ +G ++ I R
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 462 KIGLVSQ-EPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKNLPQGLDTNVGEH 520
I LV + + ++ +N+ G + S F + L + +
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFPR-----LKERLKQL 136
Query: 521 GIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSH 580
G LSGG++Q +AI RA+ P++L DE + L V E + ++ TT+++
Sbjct: 137 GGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILLVE 196
Query: 581 R--LSLIRNANIIAVIQQGKIVEKGTHSELLEN 611
+ L ++ A+ V++ G+IV +G SELL+N
Sbjct: 197 QNALGALKVAHYGYVLETGQIVLEGKASELLDN 229
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 108/232 (46%), Gaps = 19/232 (8%)
Query: 1006 NVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP 1065
+++ EVQ L V + I + + L +P G+ + L+G +G+GK+T +S +
Sbjct: 4 DIVLEVQSLHVYYG-----AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA 58
Query: 1066 SSGHITLDGVEIQKLQVKWL-RQQMGVVSQEPVLFSD-TIRANIAEMANANGFISGLQEG 1123
G I +G +I + R + +V + +F + T+ N+ A G++
Sbjct: 59 QKGKIIFNGQDITNKPAHVINRXGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRD 118
Query: 1124 YDTL------VGER----GVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVV 1173
+ + + ER G LSGG++Q +AI RA+ PK+L DE + L V
Sbjct: 119 LEWIFSLFPRLKERLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEV 178
Query: 1174 QDALDQVMVDRTTLVVAHR--LSTIKNAHLIAVVSQGMIVEKGSHESLISTK 1223
+ + ++ + TT+++ + L +K AH V+ G IV +G L+ +
Sbjct: 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 100/220 (45%), Gaps = 42/220 (19%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087
+F+ L + G +A++G++G GKST++ LL + P G I + Q
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-------------YQ 66
Query: 1088 QMGVVSQEPVLFSDTIRANIAEM------ANANGFISGLQEGYDT------------LVG 1129
+G V P FS ++ ++ + N F Y L
Sbjct: 67 SIGFV---PQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAK 123
Query: 1130 ERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVV 1189
LSGGQ+Q + IARAI E K++LLDE TSALD+ ++ +V L + + VV
Sbjct: 124 REFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVV 183
Query: 1190 AHRLSTIKNAHLIAVVSQGMIVEK-----GSHESLISTKN 1224
+T + ++A+ ++ +++ K G ++++++N
Sbjct: 184 ---FTTHQPNQVVAIANKTLLLNKQNFKFGETRNILTSEN 220
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 84/181 (46%), Gaps = 35/181 (19%)
Query: 413 GTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVL 472
G I A++G +G GKST++ L+ + P G++ + + IG V P
Sbjct: 31 GDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI-------------EVYQSIGFV---PQF 74
Query: 473 LSS----SIRDNIAYGK-THXXXXXXXXXXXXXXXSHFIKNLPQGLD----TNVGEHGI- 522
SS S+ D + G+ TH SH + Q LD T++ +
Sbjct: 75 FSSPFAYSVLDIVLMGRSTHINTFAKPK-------SHDYQVAMQALDYLNLTHLAKREFT 127
Query: 523 QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSH 580
LSGGQ+Q + IARA+ + +++LLDE TSALD + +V L + N T V +H
Sbjct: 128 SLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTH 187
Query: 581 R 581
+
Sbjct: 188 Q 188
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 65.5 bits (158), Expect = 2e-10, Method: Composition-based stats.
Identities = 63/243 (25%), Positives = 107/243 (44%), Gaps = 16/243 (6%)
Query: 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442
G E+K +N + D + L I +G L+G SG GK+T + I +P G
Sbjct: 3 GXAEVKLINI-WKRFGDVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRG 61
Query: 443 EVLIDGVNLKEFQLKWI-----REKIGLVSQEPVLLS-SSIRDNIAYGKTHXXXXXXXXX 496
++ I+ NL K + + V Q L ++ DNIA+
Sbjct: 62 QIYIED-NLVADPEKGVFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEID 120
Query: 497 XXXXXXSHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDS 556
+ + GL + +LSGGQ+QRVA+ RA+I+ P++ L DE S LD+
Sbjct: 121 KRVREVAEXL-----GLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDA 175
Query: 557 ESGRMVQEALDRV--MINRTTVIVSH-RLSLIRNANIIAVIQQGKIVEKGTHSELLENPY 613
+ + L ++ + TT+ V+H ++ + IAV +G++ + GT E+ P
Sbjct: 176 KLRVKXRAELKKLQRQLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEVYYKPV 235
Query: 614 GAY 616
+
Sbjct: 236 NTF 238
Score = 65.5 bits (158), Expect = 2e-10, Method: Composition-based stats.
Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 18/208 (8%)
Query: 1026 IEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ---- 1081
+ +DL L I G+ + L+G SG GK+T + + +P+ G I ++ + +
Sbjct: 19 VTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVF 78
Query: 1082 VKWLRQQMGVVSQEPVLFS-DTIRANIA--------EMANANGFISGLQE--GYDTLVGE 1130
V + + V Q L+ T+ NIA + + + E G L+
Sbjct: 79 VPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNR 138
Query: 1131 RGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALD--QVMVDRTTLV 1188
+ +LSGGQ+QRVA+ RAI++ PK+ L DE S LD + + L Q + TT+
Sbjct: 139 KPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIY 198
Query: 1189 VAH-RLSTIKNAHLIAVVSQGMIVEKGS 1215
V H ++ IAV ++G + + G+
Sbjct: 199 VTHDQVEAXTXGDRIAVXNKGELQQVGT 226
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 95/215 (44%), Gaps = 23/215 (10%)
Query: 408 LLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVS 467
L I G VG SG GKST++ +I +G++ I + + +G+V
Sbjct: 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMND--TPPAERGVGMVF 81
Query: 468 QEPVLLSS-SIRDNIAYG------KTHXXXXXXXXXXXXXXXSHFIKNLPQGLDTNVGEH 520
Q L S+ +N+++G K +H + P+ L
Sbjct: 82 QSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKAL------- 134
Query: 521 GIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRV--MINRTTVIV 578
SGGQ+QRVAI R ++ +P + LLDE S LD+ ++ + R+ + RT + V
Sbjct: 135 ----SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYV 190
Query: 579 SH-RLSLIRNANIIAVIQQGKIVEKGTHSELLENP 612
+H ++ + A+ I V+ G++ + G EL P
Sbjct: 191 THDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 98/203 (48%), Gaps = 20/203 (9%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087
V +D+ L I G+ + VG SG GKST++ ++ +SG + + E + +
Sbjct: 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG--EKRMNDTPPAER 75
Query: 1088 QMGVVSQEPVLFSD-TIRANIA---EMANA---------NGFISGLQEGYDTLVGERGVQ 1134
+G+V Q L+ ++ N++ ++A A N LQ + L+ +
Sbjct: 76 GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH--LLDRKPKA 133
Query: 1135 LSGGQKQRVAIARAIVKEPKILLLDEATSALD--IESERVVQDALDQVMVDRTTLVVAH- 1191
LSGGQ+QRVAI R +V EP + LLDE S LD + + ++ + + RT + V H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 1192 RLSTIKNAHLIAVVSQGMIVEKG 1214
++ + A I V+ G + + G
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVG 216
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 95/215 (44%), Gaps = 23/215 (10%)
Query: 408 LLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVS 467
L I G VG SG GKST++ +I +G++ I + + +G+V
Sbjct: 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMND--TPPAERGVGMVF 81
Query: 468 QEPVLLSS-SIRDNIAYG------KTHXXXXXXXXXXXXXXXSHFIKNLPQGLDTNVGEH 520
Q L S+ +N+++G K +H + P+ L
Sbjct: 82 QSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKAL------- 134
Query: 521 GIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRV--MINRTTVIV 578
SGGQ+QRVAI R ++ +P + LLDE S LD+ ++ + R+ + RT + V
Sbjct: 135 ----SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYV 190
Query: 579 SH-RLSLIRNANIIAVIQQGKIVEKGTHSELLENP 612
+H ++ + A+ I V+ G++ + G EL P
Sbjct: 191 THDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 98/203 (48%), Gaps = 20/203 (9%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087
V +D+ L I G+ + VG SG GKST++ ++ +SG + + E + +
Sbjct: 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG--EKRMNDTPPAER 75
Query: 1088 QMGVVSQEPVLFSD-TIRANIA---EMANA---------NGFISGLQEGYDTLVGERGVQ 1134
+G+V Q L+ ++ N++ ++A A N LQ + L+ +
Sbjct: 76 GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH--LLDRKPKA 133
Query: 1135 LSGGQKQRVAIARAIVKEPKILLLDEATSALD--IESERVVQDALDQVMVDRTTLVVAH- 1191
LSGGQ+QRVAI R +V EP + LLDE S LD + + ++ + + RT + V H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 1192 RLSTIKNAHLIAVVSQGMIVEKG 1214
++ + A I V+ G + + G
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVG 216
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 89/188 (47%), Gaps = 21/188 (11%)
Query: 1036 IPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQE 1095
I G+ I +VG +G GK+T + +L +P+ G + D K Q + V
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELL 438
Query: 1096 PVLFSDTIRANI--AEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEP 1153
+ S + +N E+ G I + YD V + LSGG+ QRVAIA ++++
Sbjct: 439 SKIDSSKLNSNFYKTELLKPLGII----DLYDRNVED----LSGGELQRVAIAATLLRDA 490
Query: 1154 KILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKNAHLIAVVSQGMIV 1211
I LLDE ++ LD+E V A+ +M ++T LVV H + +I VS +IV
Sbjct: 491 DIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH------DVLMIDYVSDRLIV 544
Query: 1212 ---EKGSH 1216
E G H
Sbjct: 545 FEGEPGRH 552
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 95/209 (45%), Gaps = 40/209 (19%)
Query: 410 IPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIR-EKIGLVSQ 468
I G + +VG +G GK+T + ++ +P G+V D ++ ++I+ E G V +
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT--VAYKPQYIKAEYEGTVYE 436
Query: 469 EPVLLS--SSIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKNLPQGL----DTNVGEHGI 522
LLS S + N + KT P G+ D NV +
Sbjct: 437 ---LLSKIDSSKLNSNFYKTELLK-------------------PLGIIDLYDRNVED--- 471
Query: 523 QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMIN--RTTVIVSH 580
LSGG+ QRVAIA +++D I LLDE ++ LD E V A+ +M +T ++V H
Sbjct: 472 -LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 530
Query: 581 RLSLIRNANIIAVIQQGKIVEKGTHSELL 609
+ +I + ++ +G E G H L
Sbjct: 531 DVLMIDYVSDRLIVFEG---EPGRHGRAL 556
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 88/205 (42%), Gaps = 17/205 (8%)
Query: 1039 GKTIALVGESGSGKSTVISLL------QRFYDPSSGHITLDGVEIQKLQVKWLRQQMG-- 1090
G + +VG +G+GK+T + +L D S + +LQ + R + G
Sbjct: 117 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEI 176
Query: 1091 --VVSQE-----PVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGV-QLSGGQKQR 1142
VV + P +R + ++ F ++E V +R + QLSGG+ QR
Sbjct: 177 RPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQR 236
Query: 1143 VAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVD-RTTLVVAHRLSTIKNAHL 1201
VAIA A++++ DE +S LDI V + ++ + + LVV H L+ +
Sbjct: 237 VAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSD 296
Query: 1202 IAVVSQGMIVEKGSHESLISTKNGI 1226
+ V G G T+NGI
Sbjct: 297 VIHVVYGEPGVYGIFSKPKGTRNGI 321
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 523 QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMIN-RTTVIVSHR 581
QLSGG+ QRVAIA A+++ DE +S LD V + R+ + ++V H
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287
Query: 582 LSLI 585
L+++
Sbjct: 288 LAVL 291
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 95/215 (44%), Gaps = 23/215 (10%)
Query: 408 LLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVS 467
L I G VG SG GKST++ +I +G++ I + + +G+V
Sbjct: 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMND--TPPAERGVGMVF 81
Query: 468 QEPVLLSS-SIRDNIAYG------KTHXXXXXXXXXXXXXXXSHFIKNLPQGLDTNVGEH 520
Q L S+ +N+++G K +H + P+ L
Sbjct: 82 QSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKAL------- 134
Query: 521 GIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRV--MINRTTVIV 578
SGGQ+QRVAI R ++ +P + LLD+ S LD+ ++ + R+ + RT + V
Sbjct: 135 ----SGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYV 190
Query: 579 SH-RLSLIRNANIIAVIQQGKIVEKGTHSELLENP 612
+H ++ + A+ I V+ G++ + G EL P
Sbjct: 191 THDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 98/203 (48%), Gaps = 20/203 (9%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087
V +D+ L I G+ + VG SG GKST++ ++ +SG + + E + +
Sbjct: 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG--EKRMNDTPPAER 75
Query: 1088 QMGVVSQEPVLFSD-TIRANIA---EMANA---------NGFISGLQEGYDTLVGERGVQ 1134
+G+V Q L+ ++ N++ ++A A N LQ + L+ +
Sbjct: 76 GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH--LLDRKPKA 133
Query: 1135 LSGGQKQRVAIARAIVKEPKILLLDEATSALD--IESERVVQDALDQVMVDRTTLVVAH- 1191
LSGGQ+QRVAI R +V EP + LLD+ S LD + + ++ + + RT + V H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
Query: 1192 RLSTIKNAHLIAVVSQGMIVEKG 1214
++ + A I V+ G + + G
Sbjct: 194 QVEAMTLADKIVVLDAGRVAQVG 216
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 89/188 (47%), Gaps = 21/188 (11%)
Query: 1036 IPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQE 1095
I G+ I +VG +G GK+T + +L +P+ G + D K Q + V
Sbjct: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELL 424
Query: 1096 PVLFSDTIRANI--AEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEP 1153
+ S + +N E+ G I + YD V + LSGG+ QRVAIA ++++
Sbjct: 425 SKIDSSKLNSNFYKTELLKPLGII----DLYDRNVED----LSGGELQRVAIAATLLRDA 476
Query: 1154 KILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKNAHLIAVVSQGMIV 1211
I LLDE ++ LD+E V A+ +M ++T LVV H + +I VS +IV
Sbjct: 477 DIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH------DVLMIDYVSDRLIV 530
Query: 1212 ---EKGSH 1216
E G H
Sbjct: 531 FEGEPGRH 538
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 95/209 (45%), Gaps = 40/209 (19%)
Query: 410 IPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIR-EKIGLVSQ 468
I G + +VG +G GK+T + ++ +P G+V D ++ ++I+ E G V +
Sbjct: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT--VAYKPQYIKAEYEGTVYE 422
Query: 469 EPVLLS--SSIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKNLPQGL----DTNVGEHGI 522
LLS S + N + KT P G+ D NV +
Sbjct: 423 ---LLSKIDSSKLNSNFYKTELLK-------------------PLGIIDLYDRNVED--- 457
Query: 523 QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMIN--RTTVIVSH 580
LSGG+ QRVAIA +++D I LLDE ++ LD E V A+ +M +T ++V H
Sbjct: 458 -LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 516
Query: 581 RLSLIRNANIIAVIQQGKIVEKGTHSELL 609
+ +I + ++ +G E G H L
Sbjct: 517 DVLMIDYVSDRLIVFEG---EPGRHGRAL 542
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 88/205 (42%), Gaps = 17/205 (8%)
Query: 1039 GKTIALVGESGSGKSTVISLL------QRFYDPSSGHITLDGVEIQKLQVKWLRQQMG-- 1090
G + +VG +G+GK+T + +L D S + +LQ + R + G
Sbjct: 103 GMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEI 162
Query: 1091 --VVSQE-----PVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGV-QLSGGQKQR 1142
VV + P +R + ++ F ++E V +R + QLSGG+ QR
Sbjct: 163 RPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQR 222
Query: 1143 VAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVD-RTTLVVAHRLSTIKNAHL 1201
VAIA A++++ DE +S LDI V + ++ + + LVV H L+ +
Sbjct: 223 VAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSD 282
Query: 1202 IAVVSQGMIVEKGSHESLISTKNGI 1226
+ V G G T+NGI
Sbjct: 283 VIHVVYGEPGVYGIFSKPKGTRNGI 307
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 523 QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMIN-RTTVIVSHR 581
QLSGG+ QRVAIA A+++ DE +S LD V + R+ + ++V H
Sbjct: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 273
Query: 582 LSLI 585
L+++
Sbjct: 274 LAVL 277
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 20/164 (12%)
Query: 1036 IPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQE 1095
I G+ I +VG +G GK+T + L +P+ G I D L V + + Q E
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWD------LTVAY-KPQYIKADYE 361
Query: 1096 PVLFSDTIRANIAEMANANGFIS------GLQEGYDTLVGERGVQLSGGQKQRVAIARAI 1149
++ + + +++ N+N + + G+ + YD V E LSGG+ QRVAIA +
Sbjct: 362 GTVYELLSKIDASKL-NSNFYKTELLKPLGIIDLYDREVNE----LSGGELQRVAIAATL 416
Query: 1150 VKEPKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAH 1191
+++ I LLDE ++ LD+E V A+ + ++T LVV H
Sbjct: 417 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEH 460
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 91/205 (44%), Gaps = 17/205 (8%)
Query: 1039 GKTIALVGESGSGKSTVISLL--QRFYDPSSGHITLDGV----EIQKLQVKWLRQQMG-- 1090
G + +VG +G+GKST + +L Q + + + DGV +LQ + + + G
Sbjct: 47 GXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEI 106
Query: 1091 ---VVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTL----VGERGVQ-LSGGQKQR 1142
V Q L ++ + E+ L+E L V ER +Q LSGG+ QR
Sbjct: 107 RPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQR 166
Query: 1143 VAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVD-RTTLVVAHRLSTIKNAHL 1201
VAIA A+++ DE +S LDI A+ ++ + ++ LVV H L+ +
Sbjct: 167 VAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSD 226
Query: 1202 IAVVSQGMIVEKGSHESLISTKNGI 1226
I V G G T+NGI
Sbjct: 227 IIHVVYGEPGVYGIFSQPKGTRNGI 251
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 523 QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMIN--RTTVIVSH 580
+LSGG+ QRVAIA +++D I LLDE ++ LD E V A+ + +T ++V H
Sbjct: 401 ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEH 460
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 94/211 (44%), Gaps = 31/211 (14%)
Query: 403 LNGFCL----LIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVL---------IDGV 449
+N F L ++ G + +VG +G+GKST + ++ AG+++ DGV
Sbjct: 33 VNAFVLYRLPVVKEGXVVGIVGPNGTGKSTAVKIL-------AGQLIPNLCGDNDSWDGV 85
Query: 450 NLKEF---QLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXSHFI 506
++ F +L+ EK+ PV+ + D I +
Sbjct: 86 -IRAFRGNELQNYFEKLKNGEIRPVVKPQYV-DLIPKAVKGKVIELLKKADETGKLEEVV 143
Query: 507 KNLPQGLDTNVGEHGIQ-LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEA 565
K L NV E IQ LSGG+ QRVAIA A++++ DE +S LD A
Sbjct: 144 KALEL---ENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARA 200
Query: 566 LDRVMIN-RTTVIVSHRLSLIRN-ANIIAVI 594
+ R+ ++ ++V H L+++ ++II V+
Sbjct: 201 IRRLSEEGKSVLVVEHDLAVLDYLSDIIHVV 231
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
Length = 267
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 97/224 (43%), Gaps = 46/224 (20%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLL--QRFYDPSSGHITLDG----------- 1074
+ R L L + PG+ A++G +GSGKST+ + L + Y+ + G + G
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 94
Query: 1075 ------------VEIQKLQVKWL--------RQQMGVVSQEPVLFSDTIRANIAEMANAN 1114
VEI + ++ R G + + F D + IA +
Sbjct: 95 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPE 154
Query: 1115 GFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQ 1174
D L V SGG+K+R I + V EP++ +LDE+ S LDI++ +VV
Sbjct: 155 ----------DLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVA 204
Query: 1175 DALDQVMV-DRTTLVVAH--RLSTIKNAHLIAVVSQGMIVEKGS 1215
D ++ + R+ ++V H R+ + V+ QG IV+ G
Sbjct: 205 DGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 248
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 117/251 (46%), Gaps = 31/251 (12%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLI--QRFYDPQAG 442
+ +KD++ S D+ IL G L + G + A++G +GSGKST+ + + + Y+ G
Sbjct: 21 LSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG 77
Query: 443 EVLIDGVNLKEFQLK-WIREKIGLVSQEPV---------LLSSSIRDNIAYGKTHXXXXX 492
V G +L + E I + Q PV L +++ +Y
Sbjct: 78 TVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRF 137
Query: 493 XXXXXXXXXXSHFIKNLPQGLDT---NVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDE 549
+ + +P+ L T NVG SGG+K+R I + + +P + +LDE
Sbjct: 138 DFQDLMEEKIA--LLKMPEDLLTRSVNVG-----FSGGEKKRNDILQMAVLEPELCILDE 190
Query: 550 ATSALDSESGRMVQEALDRVMI-NRTTVIVSHRLSLIR--NANIIAVIQQGKIVEKGTHS 606
+ S LD ++ ++V + ++ + R+ +IV+H ++ + + V+ QG+IV+ G +
Sbjct: 191 SDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 250
Query: 607 ---ELLENPYG 614
+L E YG
Sbjct: 251 LVKQLEEQGYG 261
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 97/224 (43%), Gaps = 46/224 (20%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLL--QRFYDPSSGHITLDG----------- 1074
+ R L L + PG+ A++G +GSGKST+ + L + Y+ + G + G
Sbjct: 16 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 75
Query: 1075 ------------VEIQKLQVKWL--------RQQMGVVSQEPVLFSDTIRANIAEMANAN 1114
VEI + ++ R G + + F D + IA +
Sbjct: 76 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPE 135
Query: 1115 GFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQ 1174
D L V SGG+K+R I + V EP++ +LDE+ S LDI++ +VV
Sbjct: 136 ----------DLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVA 185
Query: 1175 DALDQVMV-DRTTLVVAH--RLSTIKNAHLIAVVSQGMIVEKGS 1215
D ++ + R+ ++V H R+ + V+ QG IV+ G
Sbjct: 186 DGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 229
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 117/251 (46%), Gaps = 31/251 (12%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLI--QRFYDPQAG 442
+ +KD++ S D+ IL G L + G + A++G +GSGKST+ + + + Y+ G
Sbjct: 2 LSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG 58
Query: 443 EVLIDGVNLKEFQLK-WIREKIGLVSQEPV---------LLSSSIRDNIAYGKTHXXXXX 492
V G +L + E I + Q PV L +++ +Y
Sbjct: 59 TVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRF 118
Query: 493 XXXXXXXXXXSHFIKNLPQGLDT---NVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDE 549
+ + +P+ L T NVG SGG+K+R I + + +P + +LDE
Sbjct: 119 DFQDLMEEKIA--LLKMPEDLLTRSVNVG-----FSGGEKKRNDILQMAVLEPELCILDE 171
Query: 550 ATSALDSESGRMVQEALDRVMI-NRTTVIVSHRLSLIR--NANIIAVIQQGKIVEKGTHS 606
+ S LD ++ ++V + ++ + R+ +IV+H ++ + + V+ QG+IV+ G +
Sbjct: 172 SDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 231
Query: 607 ---ELLENPYG 614
+L E YG
Sbjct: 232 LVKQLEEQGYG 242
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 103/230 (44%), Gaps = 43/230 (18%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKL--QVKWL 1085
+ + + I G L G +G+GK+T++++L + +SG + L G K+ + +
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETV 95
Query: 1086 RQQMGVVSQ---------EPVL----------------FSDTIRANIAEMANANGFISGL 1120
RQ +G VS E V+ D IR ++ G +
Sbjct: 96 RQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAKA 155
Query: 1121 QE--GYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALD 1178
Q+ GY LS G+KQRV IARA+ +P++L+LDE + LD + + LD
Sbjct: 156 QQYIGY----------LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILD 205
Query: 1179 QVMVDRTTLV---VAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLISTKN 1224
+ TL V H + I N I ++ G +++G+ E +++++N
Sbjct: 206 SLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSEN 255
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 6/159 (3%)
Query: 402 ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKE--FQLKWI 459
IL I G L G +G+GK+T+++++ + +G V + G + + + +
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETV 95
Query: 460 REKIGLVSQ---EPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKNLPQGLDTN 516
R+ IG VS E + D + G +H + L G
Sbjct: 96 RQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLV-GXSAK 154
Query: 517 VGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALD 555
++ LS G+KQRV IARA+ P++L+LDE + LD
Sbjct: 155 AQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 41/187 (21%), Positives = 90/187 (48%), Gaps = 11/187 (5%)
Query: 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGH 1069
E++ L V + P V + +TI G + G +G GK+T++ + + P G
Sbjct: 12 EIRDLSVGYDKP------VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 65
Query: 1070 ITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEM----ANANGFISGLQEGYD 1125
I +GV I K++ K ++ + D ++A +A + N N + L+
Sbjct: 66 IIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKA-VASLYGVKVNKNEIMDALESVEV 124
Query: 1126 TLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRT 1185
+ ++ +LS G +RV +A ++ +I +LD+ A+D +S+ V ++ +++ ++
Sbjct: 125 LDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKG 184
Query: 1186 TLVVAHR 1192
++++ R
Sbjct: 185 IVIISSR 191
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/201 (21%), Positives = 92/201 (45%), Gaps = 18/201 (8%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+E++D++ Y D+ +L + I G + G +G GK+T++ I + P GE+
Sbjct: 11 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHXXXXXXXXXXXXXXXS 503
+ +GV + + ++ KI + +E ++ S+ D + + S
Sbjct: 67 IYNGVPITK-----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 121
Query: 504 HFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQ 563
+ +L + L +LS G +RV +A ++ + I +LD+ A+D +S V
Sbjct: 122 VEVLDLKKKLG--------ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVL 173
Query: 564 EALDRVMINRTTVIVSHRLSL 584
+++ ++ + VI+S R L
Sbjct: 174 KSILEILKEKGIVIISSREEL 194
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 99/230 (43%), Gaps = 30/230 (13%)
Query: 1017 SFKYPTRPHIEVFRDLCLTIPPGK-----TIALVGESGSGKSTVISLLQRFYDPSSGHIT 1071
+F YP+ + D L + G+ + ++GE+G+GK+T+I LL P G
Sbjct: 353 AFSYPSLKKTQ--GDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ-- 408
Query: 1072 LDGVEIQKLQVKWLRQQM-----GVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDT 1126
+I KL V Q++ G V Q LF IR + L+ D
Sbjct: 409 ----DIPKLNVSMKPQKIAPKFPGTVRQ---LFFKKIRGQFLNPQFQTDVVKPLR--IDD 459
Query: 1127 LVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMV--DR 1184
++ + LSGG+ QRVAI A+ I L+DE ++ LD E + + + ++ +
Sbjct: 460 IIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKK 519
Query: 1185 TTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSH----ESLISTKNGIYTSL 1230
T +V H +V +G I K +H ESL++ N +L
Sbjct: 520 TAFIVEHDFIMATYLADKVIVFEG-IPSKNAHARAPESLLTGCNRFLKNL 568
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 99/237 (41%), Gaps = 31/237 (13%)
Query: 392 FSYPARPDEQILNGFCLLIPNGT-----IAALVGTSGSGKSTVISLIQRFYDPQAGEVLI 446
FSYP+ Q F L + G I ++G +G+GK+T+I L+ P G+ I
Sbjct: 354 FSYPSLKKTQ--GDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD-I 410
Query: 447 DGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXSHFI 506
+N+ K + G V Q L IR + + +
Sbjct: 411 PKLNVSMKPQKIAPKFPGTVRQ---LFFKKIRGQFLNPQFQ---------------TDVV 452
Query: 507 KNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEAL 566
K P +D + + LSGG+ QRVAI A+ I L+DE ++ LDSE + + +
Sbjct: 453 K--PLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVI 510
Query: 567 DRVMIN--RTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIR 621
R +++ +T IV H + ++ +G I K H+ E+ NR ++
Sbjct: 511 RRFILHNKKTAFIVEHDFIMATYLADKVIVFEG-IPSKNAHARAPESLLTGCNRFLK 566
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 30/186 (16%)
Query: 1038 PGKTIALVGESGSGKSTVISLLQ--------RFYDPSSGHITLD---GVEIQKLQVKWLR 1086
PG+ + LVG +G GKST + +L RF DP + G E+Q K L
Sbjct: 102 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLE 161
Query: 1087 QQMGVVSQEPVLFSDTIRA------NIAEM---------ANANGFISGLQEGYDTLVGER 1131
+ + + P + RA + E+ + +I LQ + ++
Sbjct: 162 DDIKAIIK-PQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQ--LENVLKRD 218
Query: 1132 GVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVD-RTTLVVA 1190
+LSGG+ QR AI + V+E + + DE +S LD++ + ++ + + V
Sbjct: 219 IEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVE 278
Query: 1191 HRLSTI 1196
H LS +
Sbjct: 279 HDLSVL 284
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 81/189 (42%), Gaps = 23/189 (12%)
Query: 413 GTIAALVGTSGSGKSTVISLIQ--------RFYDPQAGEVLID---GVNLKEFQLKWIRE 461
G + LVGT+G GKST + ++ RF DP + +I G L+ + K + +
Sbjct: 103 GQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLED 162
Query: 462 KIGLVSQEPVLLSSSIRDNIAYG-KTHXXXXXXXXXXXXXXXSHFIKNLPQGLD-TNVGE 519
I ++ DNI K +K + L NV +
Sbjct: 163 DIK------AIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLK 216
Query: 520 HGIQ-LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRT--TV 576
I+ LSGG+ QR AI + +++ + + DE +S LD + R+ + R ++ T +
Sbjct: 217 RDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQ-RLNAAQIIRSLLAPTKYVI 275
Query: 577 IVSHRLSLI 585
V H LS++
Sbjct: 276 CVEHDLSVL 284
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 54.3 bits (129), Expect = 4e-07, Method: Composition-based stats.
Identities = 56/212 (26%), Positives = 95/212 (44%), Gaps = 22/212 (10%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLL--QRFYDPSSGHITLDGVEIQKLQV-KW 1084
+ + + L +P G+ AL+G +G+GKST+ +L Y G I LDG I +L +
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 1085 LRQQMGVVSQEPVLFSDTIRANIAEMA---------NANGFISGLQEGYDTLVGERGV-- 1133
R+ + + Q PV AN +A F + +++ + L +
Sbjct: 78 ARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLS 137
Query: 1134 -----QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM-VDRTTL 1187
SGG+K+R I + +V EP +LDE S LDI++ +VV ++ + + L
Sbjct: 138 RYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGAL 197
Query: 1188 VVAH--RLSTIKNAHLIAVVSQGMIVEKGSHE 1217
V+ H R+ + V+ G +V G E
Sbjct: 198 VITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 61/257 (23%), Positives = 116/257 (45%), Gaps = 25/257 (9%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLI--QRFYDPQAG 442
+E++D+ + + E IL G L++P G + AL+G +G+GKST+ ++ Y + G
Sbjct: 4 LEIRDL---WASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERG 60
Query: 443 EVLIDGVNLKEFQL-KWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXX 501
E+L+DG N+ E + R+ + L Q PV + N
Sbjct: 61 EILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANF------LRLALQAKLGREVG 114
Query: 502 XSHFIKNLPQGLD-TNVGEHGIQ------LSGGQKQRVAIARAMIKDPRILLLDEATSAL 554
+ F + + L+ + E + SGG+K+R I + ++ +P +LDE S L
Sbjct: 115 VAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGL 174
Query: 555 DSESGRMVQEALDRVM-INRTTVIVSHRLSLIR--NANIIAVIQQGKIVEKGTHSELLEN 611
D ++ ++V ++ + N ++++H ++ + + V+ G++V G LE
Sbjct: 175 DIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALEL 234
Query: 612 PYGAYNRLIRLQETCKE 628
Y L+E KE
Sbjct: 235 EAKGYE---WLKEKVKE 248
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 66/139 (47%), Gaps = 22/139 (15%)
Query: 505 FIKNLPQ-----------GLD-TNVGEHGIQLSGGQKQRVAIARAMIKDPR---ILLLDE 549
F KN+P GL +G+ LSGG+ QR+ +A + K + +LDE
Sbjct: 775 FFKNIPSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDE 834
Query: 550 ATSALDSESGRMVQEALDRVMINRTTVIV-SHRLSLIRNANIIAVI------QQGKIVEK 602
T L E R + E L R++ TVIV H L +I+NA+ I + + G IV
Sbjct: 835 PTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVAT 894
Query: 603 GTHSELLENPYGAYNRLIR 621
GT E+ +NP+ R ++
Sbjct: 895 GTPEEIAKNPHSYTGRFLK 913
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 13/108 (12%)
Query: 1123 GYDTLVGERGVQLSGGQKQRVAIARAIVKEP---KILLLDEATSALDIESERVVQDALDQ 1179
GY L G+ LSGG+ QR+ +A + K + +LDE T L E R + + L +
Sbjct: 795 GYVKL-GQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHR 853
Query: 1180 VMVDR--TTLVVAHRLSTIKNA-HLIAVVSQ-----GMIVEKGSHESL 1219
+VDR T +V+ H L IKNA H+I + + G IV G+ E +
Sbjct: 854 -LVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEI 900
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 524 LSGGQKQRVAIARAMIKDPR--ILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSH 580
LSGG+ QR+ +A + I +LDE T L + + L ++ + T ++V H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 581 RLSLIRNANIIAVIQQG------KIVEKGTHSELLENP 612
+IRNA+ I I G ++V +GT ELL+NP
Sbjct: 525 DEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNP 562
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 1135 LSGGQKQRVAIARAIVK--EPKILLLDEATSALDI-ESERVVQDALDQVMVDRTTLVVAH 1191
LSGG+ QR+ +A I I +LDE T L ++ER+++ + T +VV H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 1192 RLSTIKNA-HLIAV 1204
I+NA H+I +
Sbjct: 525 DEEVIRNADHIIDI 538
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 49.7 bits (117), Expect = 9e-06, Method: Composition-based stats.
Identities = 52/227 (22%), Positives = 102/227 (44%), Gaps = 24/227 (10%)
Query: 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462
L+G + + G + ++G +GSGKST+I++I F G V + ++ + +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH- 81
Query: 463 IGLVS--QEPVLLSS-SIRDNIAYGKTHXXXX-------------XXXXXXXXXXXSHFI 506
G+V Q P L ++ +N+ G+ + F+
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 507 KNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSAL-DSESGRMVQEA 565
K L D GE LSGGQ + V I RA++ +P+++++D+ + + + +
Sbjct: 142 K-LSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHV 196
Query: 566 LDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLEN 611
L+ T +I+ HRL ++ N + + V+ G+I+ +G E ++N
Sbjct: 197 LELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 54/222 (24%), Positives = 94/222 (42%), Gaps = 43/222 (19%)
Query: 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEI--------------QK 1079
+++ G ++G +GSGKST+I+++ F G + + +I +
Sbjct: 28 ISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRT 87
Query: 1080 LQVKWLRQQMGVVS----------QEPV--LFSDTIRANIAEMANANGFIS---GLQEGY 1124
Q ++M V+ + P+ LF EM I L Y
Sbjct: 88 FQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLY 147
Query: 1125 DTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR 1184
D GE LSGGQ + V I RA++ PK++++D+ + + + + D + V+ +
Sbjct: 148 DRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDQPIAGV---APGLAHDIFNHVLELK 200
Query: 1185 ----TTLVVAHRLSTIKN--AHLIAVVSQGMIVEKGSHESLI 1220
T L++ HRL + N HL V+ G I+ +G E I
Sbjct: 201 AKGITFLIIEHRLDIVLNYIDHLY-VMFNGQIIAEGRGEEEI 241
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 105/230 (45%), Gaps = 30/230 (13%)
Query: 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462
L+G + + G + ++G +GSGKST+I++I F G V + ++ + +
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH- 81
Query: 463 IGLVS--QEPVLLSS-SIRDNIAYGKTHX-------------XXXXXXXXXXXXXXSHFI 506
G+V Q P L ++ +N+ G+ + F+
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 507 KNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEAL 566
K L D GE LSGGQ + V I RA++ +P+++++DE + + + + +
Sbjct: 142 K-LSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGV---APGLAHDIF 193
Query: 567 DRVMINR----TTVIVSHRLSLIRNA-NIIAVIQQGKIVEKGTHSELLEN 611
+ V+ + T +I+ HRL ++ N + + V+ G+I+ +G E ++N
Sbjct: 194 NHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 95/226 (42%), Gaps = 43/226 (19%)
Query: 1032 LCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEI-------------- 1077
+ +++ G ++G +GSGKST+I+++ F G + + +I
Sbjct: 26 VSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 85
Query: 1078 QKLQVKWLRQQMGVVS----------QEPV--LFSDTIRANIAEMANANGFIS---GLQE 1122
+ Q ++M V+ + P+ LF EM I L
Sbjct: 86 RTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH 145
Query: 1123 GYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMV 1182
YD GE LSGGQ + V I RA++ PK++++DE + + + + D + V+
Sbjct: 146 LYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGV---APGLAHDIFNHVLE 198
Query: 1183 DR----TTLVVAHRLSTIKNA--HLIAVVSQGMIVEKGSHESLIST 1222
+ T L++ HRL + N HL V+ G I+ +G E I
Sbjct: 199 LKAKGITFLIIEHRLDIVLNYIDHL-YVMFNGQIIAEGRGEEEIKN 243
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 104/230 (45%), Gaps = 30/230 (13%)
Query: 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462
L+G + + G + ++G +GSGKST+I++I F G V + ++ + +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH- 81
Query: 463 IGLVS--QEPVLLSS-SIRDNIAYGK-------------THXXXXXXXXXXXXXXXSHFI 506
G+V Q P L ++ +N+ G+ F+
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 507 KNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEAL 566
K L D GE LSGGQ + V I RA++ +P+++++DE + + + + +
Sbjct: 142 K-LSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGV---APGLAHDIF 193
Query: 567 DRVMINR----TTVIVSHRLSLIRNA-NIIAVIQQGKIVEKGTHSELLEN 611
+ V+ + T +I+ HRL ++ N + + V+ G+I+ +G E ++N
Sbjct: 194 NHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 95/226 (42%), Gaps = 43/226 (19%)
Query: 1032 LCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEI-------------- 1077
+ +++ G ++G +GSGKST+I+++ F G + + +I
Sbjct: 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 85
Query: 1078 QKLQVKWLRQQMGVVS----------QEPV--LFSDTIRANIAEMANANGFIS---GLQE 1122
+ Q ++M V+ + P+ LF EM I L
Sbjct: 86 RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH 145
Query: 1123 GYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMV 1182
YD GE LSGGQ + V I RA++ PK++++DE + + + + D + V+
Sbjct: 146 LYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGV---APGLAHDIFNHVLE 198
Query: 1183 DR----TTLVVAHRLSTIKNA--HLIAVVSQGMIVEKGSHESLIST 1222
+ T L++ HRL + N HL V+ G I+ +G E I
Sbjct: 199 LKAKGITFLIIEHRLDIVLNYIDHL-YVMFNGQIIAEGRGEEEIKN 243
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 30/208 (14%)
Query: 1039 GKTIALVGESGSGKSTVISLLQRFYDPSSGH--ITLDGVEIQ-------KLQVKWLRQQM 1089
G+ + LVG +G+GKST LL R +SG I G ++ L +L QQ
Sbjct: 26 GEILHLVGPNGAGKST---LLARXAGXTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQ 82
Query: 1090 GVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAI 1149
PV T+ + ++G D +G QLSGG+ QRV +A +
Sbjct: 83 TPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-ALDDKLGRSTNQLSGGEWQRVRLAAVV 141
Query: 1150 VK-------EPKILLLDEATSALDIESERVVQDALDQVM--VDRTTLVV---AHRLS-TI 1196
++ ++LLLDE ++LD+ Q ALD+++ + + L + +H L+ T+
Sbjct: 142 LQITPQANPAGQLLLLDEPXNSLDVAQ----QSALDKILSALSQQGLAIVXSSHDLNHTL 197
Query: 1197 KNAHLIAVVSQGMIVEKGSHESLISTKN 1224
++AH ++ G + G E +++ N
Sbjct: 198 RHAHRAWLLKGGKXLASGRREEVLTPPN 225
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 17/114 (14%)
Query: 512 GLDTNVGEHGIQLSGGQKQRVAIARAMIK-----DP--RILLLDEATSALDSESGRMVQE 564
LD +G QLSGG+ QRV +A +++ +P ++LLLDE ++LD Q
Sbjct: 115 ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ----QS 170
Query: 565 ALDRVMINRTT-----VIVSHRLS-LIRNANIIAVIQQGKIVEKGTHSELLENP 612
ALD+++ + V SH L+ +R+A+ +++ GK + G E+L P
Sbjct: 171 ALDKILSALSQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPP 224
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 47.0 bits (110), Expect = 6e-05, Method: Composition-based stats.
Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 22/204 (10%)
Query: 1039 GKTIALVGESGSGKSTVISLLQRFYDPSSGH--ITLDGVEIQ-------KLQVKWLRQQM 1089
G+ + LVG +G+GKST LL R +SG I G ++ L +L QQ
Sbjct: 26 GEILHLVGPNGAGKST---LLARXAGXTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQ 82
Query: 1090 GVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAI 1149
PV T+ + ++G D +G QLSGG+ QRV +A +
Sbjct: 83 TPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-ALDDKLGRSTNQLSGGEWQRVRLAAVV 141
Query: 1150 VK-------EPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVV-AHRLS-TIKNAH 1200
++ ++LLLDE ++LD+ + + L + +V +H L+ T+++AH
Sbjct: 142 LQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLAIVXSSHDLNHTLRHAH 201
Query: 1201 LIAVVSQGMIVEKGSHESLISTKN 1224
++ G + G E +++ N
Sbjct: 202 RAWLLKGGKXLASGRREEVLTPPN 225
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 17/114 (14%)
Query: 512 GLDTNVGEHGIQLSGGQKQRVAIARAMIK-----DP--RILLLDEATSALDSESGRMVQE 564
LD +G QLSGG+ QRV +A +++ +P ++LLLDE ++LD Q
Sbjct: 115 ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ----QS 170
Query: 565 ALDRVMI-----NRTTVIVSHRLS-LIRNANIIAVIQQGKIVEKGTHSELLENP 612
ALD+++ V SH L+ +R+A+ +++ GK + G E+L P
Sbjct: 171 ALDKILSALCQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPP 224
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
Length = 538
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 90/198 (45%), Gaps = 35/198 (17%)
Query: 1023 RPHIEVFRDLCLTIPPGKTI-ALVGESGSGKSTVISLLQ-----RFYDPSSGHITLDGVE 1076
R + F+ L P TI ++G++G GK+TV+ +L F DP+S +
Sbjct: 8 RYKVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNS--------K 59
Query: 1077 IQKLQVKWLRQQMGVVSQEPVLFSDTIR--ANIAEMANANGFISGLQEGYDTLVGERGVQ 1134
+ K +V + + + L+S+ ++ I + A+ F+ G T + ERG +
Sbjct: 60 VGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKK 119
Query: 1135 -------------------LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQD 1175
LSGG QR+ +A ++++E + + D+ +S LD+ +
Sbjct: 120 DEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAK 179
Query: 1176 ALDQVMVDRTTLVVAHRL 1193
A+ +++ ++ +VV H L
Sbjct: 180 AIRELLKNKYVIVVDHDL 197
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 6/79 (7%)
Query: 508 NLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALD 567
NL + L++NV + LSGG+ Q++ IA + K+ + +LD+ +S LD E +V +A+
Sbjct: 374 NLHRLLESNVND----LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIK 429
Query: 568 RVMINR--TTVIVSHRLSL 584
RV R T I+ H LS+
Sbjct: 430 RVTRERKAVTFIIDHDLSI 448
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 1135 LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR--TTLVVAHR 1192
LSGG+ Q++ IA + KE + +LD+ +S LD+E +V A+ +V +R T ++ H
Sbjct: 386 LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD 445
Query: 1193 LSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPHTT 1236
LS +V +G + G S ++ K G+ L E T
Sbjct: 446 LSIHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLRELEVT 489
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 89/208 (42%), Gaps = 49/208 (23%)
Query: 403 LNGFCLL-IP---NGTIAALVGTSGSGKSTVI-----SLIQRFYDPQAGEVLIDGVNLKE 453
+NGF L +P N TI ++G +G GK+TV+ +I F DP + +V D V LK
Sbjct: 11 VNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNS-KVGKDEV-LKR 68
Query: 454 FQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKNLPQGL 513
F+ K I + + + I+ + Y S F+K +
Sbjct: 69 FRGKEIYNYFKELYSNELKIVHKIQ-YVEYA------------------SKFLKGTVNEI 109
Query: 514 DTNVGEHGIQ-------------------LSGGQKQRVAIARAMIKDPRILLLDEATSAL 554
T + E G + LSGG QR+ +A +++++ + + D+ +S L
Sbjct: 110 LTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYL 169
Query: 555 DSESGRMVQEALDRVMINRTTVIVSHRL 582
D + +A+ ++ N+ ++V H L
Sbjct: 170 DVRERMNMAKAIRELLKNKYVIVVDHDL 197
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 47.0 bits (110), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 30/208 (14%)
Query: 1039 GKTIALVGESGSGKSTVISLLQRFYDPSSGH--ITLDGVEIQ-------KLQVKWLRQQM 1089
G+ + LVG +G+GKST LL R +SG I G ++ L +L QQ
Sbjct: 26 GEILHLVGPNGAGKST---LLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQ 82
Query: 1090 GVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAI 1149
PV T+ + ++G D +G QLSGG+ QRV +A +
Sbjct: 83 TPPFATPVWHYLTLHQHDKTRTELLNDVAG-ALALDDKLGRSTNQLSGGEWQRVRLAAVV 141
Query: 1150 VK-----EP--KILLLDEATSALDIESERVVQDALDQVM--VDRTTLVV---AHRLS-TI 1196
++ P ++LLLD+ ++LD+ Q ALD+++ + + L + +H L+ T+
Sbjct: 142 LQITPQANPAGQLLLLDQPMNSLDVAQ----QSALDKILSALSQQGLAIVMSSHDLNHTL 197
Query: 1197 KNAHLIAVVSQGMIVEKGSHESLISTKN 1224
++AH ++ G ++ G E +++ N
Sbjct: 198 RHAHRAWLLKGGKMLASGRREEVLTPPN 225
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 17/113 (15%)
Query: 513 LDTNVGEHGIQLSGGQKQRVAIARAMIK-----DP--RILLLDEATSALDSESGRMVQEA 565
LD +G QLSGG+ QRV +A +++ +P ++LLLD+ ++LD Q A
Sbjct: 116 LDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQ----QSA 171
Query: 566 LDRVMINRTT-----VIVSHRLS-LIRNANIIAVIQQGKIVEKGTHSELLENP 612
LD+++ + V+ SH L+ +R+A+ +++ GK++ G E+L P
Sbjct: 172 LDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 224
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 97/208 (46%), Gaps = 30/208 (14%)
Query: 1039 GKTIALVGESGSGKSTVISLLQRFYDPSSGH--ITLDGVEIQ-------KLQVKWLRQQM 1089
G+ + LVG +G+GKST LL R +SG I G ++ L +L QQ
Sbjct: 26 GEILHLVGPNGAGKST---LLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQ 82
Query: 1090 GVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAI 1149
PV T+ + ++G D +G QLSGG+ QRV +A +
Sbjct: 83 TPPFATPVWHYLTLHQHDKTRTELLNDVAG-ALALDDKLGRSTNQLSGGEWQRVRLAAVV 141
Query: 1150 VK-----EP--KILLLDEATSALDIESERVVQDALDQVM--VDRTTLVV---AHRLS-TI 1196
++ P ++LLLD+ +LD+ Q ALD+++ + + L + +H L+ T+
Sbjct: 142 LQITPQANPAGQLLLLDQPMCSLDVAQ----QSALDKILSALSQQGLAIVMSSHDLNHTL 197
Query: 1197 KNAHLIAVVSQGMIVEKGSHESLISTKN 1224
++AH ++ G ++ G E +++ N
Sbjct: 198 RHAHRAWLLKGGKMLASGRREEVLTPPN 225
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 61/113 (53%), Gaps = 17/113 (15%)
Query: 513 LDTNVGEHGIQLSGGQKQRVAIARAMIK-----DP--RILLLDEATSALDSESGRMVQEA 565
LD +G QLSGG+ QRV +A +++ +P ++LLLD+ +LD Q A
Sbjct: 116 LDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQ----QSA 171
Query: 566 LDRVMINRTT-----VIVSHRLS-LIRNANIIAVIQQGKIVEKGTHSELLENP 612
LD+++ + V+ SH L+ +R+A+ +++ GK++ G E+L P
Sbjct: 172 LDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 224
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 524 LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLS 583
LSGG K ++A+ARA++++ ILLLDE T+ LD+ + + L+ I T++ +SH
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGI--TSITISHDSV 606
Query: 584 LIRN 587
+ N
Sbjct: 607 FLDN 610
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 1135 LSGGQKQRVAIARAIVKEPKILLLDEATSALD 1166
LSGG K ++A+ARA+++ ILLLDE T+ LD
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLD 580
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 512 GLDTNVGEHGI--QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRV 569
GLD + H LSGGQK ++ +A + P +++LDE T+ LD +S + +AL
Sbjct: 888 GLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE- 946
Query: 570 MINRTTVIVSHRLSLIRN 587
+I++H +N
Sbjct: 947 -FEGGVIIITHSAEFTKN 963
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 1135 LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLS 1194
LSGGQK ++ +A + P +++LDE T+ LD +S + AL + + +++ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE--FEGGVIIITHSAE 959
Query: 1195 TIKN 1198
KN
Sbjct: 960 FTKN 963
Score = 33.5 bits (75), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 1011 VQFLRVSFKYP--TRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG 1068
V+ F+YP ++P I D+ IA++G +G+GKST+I++L P+SG
Sbjct: 672 VKVTNXEFQYPGTSKPQI---TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG 728
Query: 1069 HI 1070
+
Sbjct: 729 EV 730
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 385 IELKDVNFSYPARPDEQI--LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442
+++ + F YP QI +N C L + A++G +G+GKST+I+++ P +G
Sbjct: 672 VKVTNXEFQYPGTSKPQITDINFQCSL---SSRIAVIGPNGAGKSTLINVLTGELLPTSG 728
Query: 443 EV 444
EV
Sbjct: 729 EV 730
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 524 LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLS 583
LSGG K ++A+ARA++++ ILLLDE T+ LD+ + + L+ I T++ +SH
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGI--TSITISHDSV 600
Query: 584 LIRN 587
+ N
Sbjct: 601 FLDN 604
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 1135 LSGGQKQRVAIARAIVKEPKILLLDEATSALD 1166
LSGG K ++A+ARA+++ ILLLDE T+ LD
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLD 574
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 512 GLDTNVGEHGI--QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRV 569
GLD + H LSGGQK ++ +A + P +++LDE T+ LD +S + +AL
Sbjct: 882 GLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE- 940
Query: 570 MINRTTVIVSHRLSLIRN 587
+I++H +N
Sbjct: 941 -FEGGVIIITHSAEFTKN 957
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 1135 LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLS 1194
LSGGQK ++ +A + P +++LDE T+ LD +S + AL + + +++ H
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE--FEGGVIIITHSAE 953
Query: 1195 TIKN 1198
KN
Sbjct: 954 FTKN 957
Score = 33.5 bits (75), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 1011 VQFLRVSFKYP--TRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG 1068
V+ F+YP ++P I D+ IA++G +G+GKST+I++L P+SG
Sbjct: 666 VKVTNXEFQYPGTSKPQI---TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG 722
Query: 1069 HI 1070
+
Sbjct: 723 EV 724
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 385 IELKDVNFSYPARPDEQI--LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442
+++ + F YP QI +N C L + A++G +G+GKST+I+++ P +G
Sbjct: 666 VKVTNXEFQYPGTSKPQITDINFQCSL---SSRIAVIGPNGAGKSTLINVLTGELLPTSG 722
Query: 443 EV 444
EV
Sbjct: 723 EV 724
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 524 LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLS 583
LSGG K ++A+ARA++++ ILLLDE T+ LD+ + + L+ I T++ +SH
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGI--TSITISHDSV 606
Query: 584 LIRN 587
+ N
Sbjct: 607 FLDN 610
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 1135 LSGGQKQRVAIARAIVKEPKILLLDEATSALD 1166
LSGG K ++A+ARA+++ ILLLDE T+ LD
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLD 580
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 512 GLDTNVGEHGI--QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRV 569
GLD + H LSGGQK ++ +A + P +++LDE T+ LD +S + +AL
Sbjct: 888 GLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE- 946
Query: 570 MINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKG 603
+I++H +N + ++ G++ G
Sbjct: 947 -FEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSG 980
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 1135 LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLS 1194
LSGGQK ++ +A + P +++LDE T+ LD +S + AL + + +++ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE--FEGGVIIITHSAE 959
Query: 1195 TIKN 1198
KN
Sbjct: 960 FTKN 963
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 1011 VQFLRVSFKYP--TRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG 1068
V+ + F+YP ++P I D+ IA++G +G+GKST+I++L P+SG
Sbjct: 672 VKVTNMEFQYPGTSKPQI---TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG 728
Query: 1069 HI 1070
+
Sbjct: 729 EV 730
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 385 IELKDVNFSYPARPDEQI--LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442
+++ ++ F YP QI +N C L + A++G +G+GKST+I+++ P +G
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSL---SSRIAVIGPNGAGKSTLINVLTGELLPTSG 728
Query: 443 EV 444
EV
Sbjct: 729 EV 730
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 40/170 (23%), Positives = 83/170 (48%), Gaps = 23/170 (13%)
Query: 1039 GKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ--------QMG 1090
G+ + ++G +GSGK+T++ + P SG+I ++G+E++K++ ++R ++G
Sbjct: 30 GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIR-NYIRYSTNLPEAYEIG 87
Query: 1091 VVSQEPVLFSDTI----RANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIA 1146
V + V + + R EM A L+ G + ++ + +LS GQ V +
Sbjct: 88 VTVNDIVYLYEELKGLDRDLFLEMLKA------LKLG-EEILRRKLYKLSAGQSVLVRTS 140
Query: 1147 RAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTI 1196
A+ +P+I+ LDE +D V+ + + + ++V H L +
Sbjct: 141 LALASQPEIVGLDEPFENVDAARRHVISRYIKE--YGKEGILVTHELDML 188
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 43/206 (20%), Positives = 86/206 (41%), Gaps = 24/206 (11%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
I+LK+V + + E+ L NG ++G +GSGK+T++ I P +G +
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISGLL-PYSGNI 60
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXSH 504
I+G+ +++ + +IR S+++ + G T
Sbjct: 61 FINGMEVRKIR-NYIR------------YSTNLPEAYEIGVTVNDIVYLYEELKGLDRDL 107
Query: 505 FIKNLPQGLDTNVGEHGI-----QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESG 559
F++ L +GE + +LS GQ V + A+ P I+ LDE +D+
Sbjct: 108 FLEMLKA---LKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARR 164
Query: 560 RMVQEALDRVMINRTTVIVSHRLSLI 585
++ + + ++V+H L ++
Sbjct: 165 HVISRYIKEY--GKEGILVTHELDML 188
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 10/105 (9%)
Query: 516 NVGEHGIQLSGGQKQRVAIARAMIKDPR---ILLLDEATSALDSESGRMVQEALDRVMIN 572
+G+ LSGG+ QRV +A + + + +LDE T+ L + + + L R++ N
Sbjct: 838 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 573 RTTVIV-SHRLSLIRNANIIAVI------QQGKIVEKGTHSELLE 610
TV+V H L +I+ A+ I + + G+IV GT E+ E
Sbjct: 898 GDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 942
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 1123 GYDTLVGERGVQLSGGQKQRVAIARAIVKEPK---ILLLDEATSALDIESERVVQDALDQ 1179
GY L G+ LSGG+ QRV +A + + + +LDE T+ L ++ + D L +
Sbjct: 835 GYMKL-GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 893
Query: 1180 VMVDR--TTLVVAHRLSTIKNAHLIAVVSQ------GMIVEKGSHESLISTKNGIYTSLI 1231
+VD T LV+ H L IK A I + G IV G+ E + K +
Sbjct: 894 -LVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYL 952
Query: 1232 EP 1233
+P
Sbjct: 953 KP 954
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 400 EQILNGFCLLIPNGTIAALVGTSGSGKSTVIS 431
E L + IP GT A+ G SGSGKST+++
Sbjct: 637 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVN 668
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 10/105 (9%)
Query: 516 NVGEHGIQLSGGQKQRVAIARAMIKDPR---ILLLDEATSALDSESGRMVQEALDRVMIN 572
+G+ LSGG+ QRV +A + + + +LDE T+ L + + + L R++ N
Sbjct: 838 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 573 RTTVIV-SHRLSLIRNANIIAVI------QQGKIVEKGTHSELLE 610
TV+V H L +I+ A+ I + + G+IV GT E+ E
Sbjct: 898 GDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 942
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 1123 GYDTLVGERGVQLSGGQKQRVAIARAIVKEPK---ILLLDEATSALDIESERVVQDALDQ 1179
GY L G+ LSGG+ QRV +A + + + +LDE T+ L ++ + D L +
Sbjct: 835 GYXKL-GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 893
Query: 1180 VMVDR--TTLVVAHRLSTIKNAHLIAVVSQ------GMIVEKGSHESLISTKNGIYTSLI 1231
+VD T LV+ H L IK A I + G IV G+ E + K +
Sbjct: 894 -LVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYL 952
Query: 1232 EP 1233
+P
Sbjct: 953 KP 954
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 400 EQILNGFCLLIPNGTIAALVGTSGSGKSTVISLI 433
E L + IP GT A+ G SGSGKST+++ +
Sbjct: 637 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEV 670
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 10/105 (9%)
Query: 516 NVGEHGIQLSGGQKQRVAIARAMIK--DPRIL-LLDEATSALDSESGRMVQEALDRVMIN 572
+G+ LSGG+ QRV +A + + + R L +LDE T+ L + + + L R++ N
Sbjct: 536 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 595
Query: 573 RTTVIV-SHRLSLIRNANIIAVI------QQGKIVEKGTHSELLE 610
TV+V H L +I+ A+ I + + G+IV GT E+ E
Sbjct: 596 GDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 640
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 12/117 (10%)
Query: 1128 VGERGVQLSGGQKQRVAIARAIVKEPK---ILLLDEATSALDIESERVVQDALDQVMVDR 1184
+G+ LSGG+ QRV +A + + + +LDE T+ L ++ + D L + +VD
Sbjct: 537 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR-LVDN 595
Query: 1185 --TTLVVAHRLSTIKNAHLIAVVSQ------GMIVEKGSHESLISTKNGIYTSLIEP 1233
T LV+ H L IK A I + G IV G+ E + K ++P
Sbjct: 596 GDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLKP 652
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 400 EQILNGFCLLIPNGTIAALVGTSGSGKSTVIS 431
E L + IP GT A+ G SGSGKST+++
Sbjct: 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVN 366
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 10/105 (9%)
Query: 516 NVGEHGIQLSGGQKQRVAIARAMIKDPR---ILLLDEATSALDSESGRMVQEALDRVMIN 572
+G+ +LSGG+ QR+ +A + + R + +LDE T+ L +Q L +++
Sbjct: 723 RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782
Query: 573 RTTVI-VSHRLSLIRNANIIAVI------QQGKIVEKGTHSELLE 610
TVI V H++ ++ ++ + I G++V +GT +E+ +
Sbjct: 783 GNTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQ 827
Score = 33.1 bits (74), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 1128 VGERGVQLSGGQKQRVAIARAIVKEPK---ILLLDEATSAL-DIESERVVQDALDQVMVD 1183
+G+ +LSGG+ QR+ +A + + + + +LDE T+ L + ER+ + + V
Sbjct: 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG 783
Query: 1184 RTTLVVAHRLSTIKNAHLIAVVSQG 1208
T + V H++ + + + + G
Sbjct: 784 NTVIAVEHKMQVVAASDWVLDIGPG 808
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 38.1 bits (87), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 524 LSGGQKQRVAIARAMIKD--PRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSH 580
LSGG+ QR+ +A + + +LDE + L R + E L R+ + T ++V H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 581 RLSLIRNANIIAVI------QQGKIVEKGTHSELLENP---YGAY 616
I +A+ I I G+IV G + ELL N GAY
Sbjct: 582 DEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRNKDSITGAY 626
Score = 37.0 bits (84), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 1100 SDTIRANIAEMANANGFISGLQEGYDTLV---------GERGVQLSGGQKQRVAIARAIV 1150
S+ + +I E A I+G+ TLV G+ LSGG+ QRV +A +
Sbjct: 820 SEVLDMSIEEAAEFFEPIAGVHRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQ 879
Query: 1151 KEP---KILLLDEATSALDIESERVVQDALDQVMVDR--TTLVVAHRLSTIKNAHLI 1202
K + +LDE T+ L + R + + ++ +VD+ T +V+ H L IK + I
Sbjct: 880 KRSTGRTVYILDEPTTGLHFDDIRKLLNVING-LVDKGNTVIVIEHNLDVIKTSDWI 935
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 516 NVGEHGIQLSGGQKQRVAIARAMIKDP---RILLLDEATSALDSESGRMVQEALDRVMIN 572
+G+ LSGG+ QRV +A + K + +LDE T+ L + R + ++ ++
Sbjct: 856 RLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDK 915
Query: 573 RTTVIV-SHRLSLIRNANII 591
TVIV H L +I+ ++ I
Sbjct: 916 GNTVIVIEHNLDVIKTSDWI 935
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 1135 LSGGQKQRVAIARAIVKE--PKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAH 1191
LSGG+ QR+ +A I + +LDE + L R + + L ++ + T +VV H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 1192 RLSTIKNAHLIAVVSQ------GMIVEKGSHESLISTKNGI 1226
TI++A I + G IV G ++ L+ K+ I
Sbjct: 582 DEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRNKDSI 622
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 1112 NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESER 1171
N NG I + +G D ++ G +L+ Q R+I L++DEA LD+E E
Sbjct: 132 NRNGQIEDISKGVDIIIATPG-RLNDLQMNNSVNLRSIT----YLVIDEADKMLDMEFEP 186
Query: 1172 VVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIV 1211
++ L V DR T++ + ++ + MIV
Sbjct: 187 QIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIV 226
>pdb|2OAP|1 Chain 1, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Amp-Pnp
pdb|2OAP|2 Chain 2, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Amp-Pnp
pdb|2OAQ|1 Chain 1, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Phosphate
pdb|2OAQ|2 Chain 2, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Phosphate
Length = 511
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 402 ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLI-DGVNLKEFQLKWIR 460
+L L I + A +VG + SGK+T ++ I F P A V I D +K + WI
Sbjct: 249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIXXFIPPDAKVVSIEDTREIKLYHENWIA 308
Query: 461 E 461
E
Sbjct: 309 E 309
>pdb|1BCC|C Chain C, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|C Chain C, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|C Chain C, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3CWB|C Chain C, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|P Chain P, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|C Chain C, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|P Chain P, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|C Chain C, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|P Chain P, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|C Chain C, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|P Chain P, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|C Chain C, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|P Chain P, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|C Chain C, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|P Chain P, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|C Chain C, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|P Chain P, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|C Chain C, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|P Chain P, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|C Chain C, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|P Chain P, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|C Chain C, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|P Chain P, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|C Chain C, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|P Chain P, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|C Chain C, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|P Chain P, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
Length = 380
Score = 31.2 bits (69), Expect = 3.8, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 30 HERGMN--INIITVNGRIPFHKLLSFADLLDSVLML 63
HE G N + I + + +IPFH SF D+L LML
Sbjct: 202 HESGSNNPLGISSDSDKIPFHPYYSFKDILGLTLML 237
>pdb|3TGU|C Chain C, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|P Chain P, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 380
Score = 31.2 bits (69), Expect = 3.8, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 30 HERGMN--INIITVNGRIPFHKLLSFADLLDSVLML 63
HE G N + I + + +IPFH SF D+L LML
Sbjct: 202 HESGSNNPLGISSDSDKIPFHPYYSFKDILGLTLML 237
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 1130 ERGVQLSGGQKQRV----AIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRT 1185
ERGV++ R+ + ++ L+LDEA LD+ E ++ +DQ+ DR
Sbjct: 164 ERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 223
Query: 1186 TLV 1188
TL+
Sbjct: 224 TLM 226
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 1130 ERGVQLSGGQKQRV----AIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRT 1185
ERGV++ R+ + ++ L+LDEA LD+ E ++ +DQ+ DR
Sbjct: 150 ERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 209
Query: 1186 TLV 1188
TL+
Sbjct: 210 TLM 212
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 30.4 bits (67), Expect = 6.1, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 524 LSGGQK------QRVAIARAMIKDP-RILLLDEATSALDSESGRMVQEALDRVMINRTTV 576
LSGG++ R+AIA A+I + ++LDE T LD + E +V +
Sbjct: 281 LSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMI 340
Query: 577 IVSHRLSLIRNANIIAVIQQGKIVEK 602
I++H L A++I +++ V K
Sbjct: 341 IITHHRELEDVADVIINVKKDGNVSK 366
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,760,569
Number of Sequences: 62578
Number of extensions: 1154372
Number of successful extensions: 3993
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 3417
Number of HSP's gapped (non-prelim): 344
length of query: 1236
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1126
effective length of database: 8,089,757
effective search space: 9109066382
effective search space used: 9109066382
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)