Query 040099
Match_columns 1236
No_of_seqs 857 out of 4473
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 07:42:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040099.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040099hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 4E-197 1E-201 1958.8 129.8 1190 42-1235 57-1317(1321)
2 3g5u_A MCG1178, multidrug resi 100.0 6E-174 2E-178 1731.1 114.7 1190 43-1235 31-1271(1284)
3 3qf4_A ABC transporter, ATP-bi 100.0 5.1E-90 1.7E-94 855.9 70.7 572 44-624 8-579 (587)
4 4a82_A Cystic fibrosis transme 100.0 1.8E-89 6.1E-94 851.3 67.4 572 47-623 2-576 (578)
5 4f4c_A Multidrug resistance pr 100.0 1.1E-89 3.7E-94 920.7 69.8 564 668-1234 55-653 (1321)
6 3qf4_B Uncharacterized ABC tra 100.0 1.4E-89 4.9E-94 854.6 65.8 571 44-625 22-592 (598)
7 2yl4_A ATP-binding cassette SU 100.0 4.4E-87 1.5E-91 833.4 75.5 575 46-624 6-584 (595)
8 3b5x_A Lipid A export ATP-bind 100.0 7.7E-87 2.6E-91 829.1 76.8 568 46-624 12-580 (582)
9 3b60_A Lipid A export ATP-bind 100.0 8.2E-87 2.8E-91 828.8 72.1 568 45-623 11-579 (582)
10 3qf4_A ABC transporter, ATP-bi 100.0 2.2E-82 7.5E-87 787.5 67.0 555 673-1234 9-578 (587)
11 3qf4_B Uncharacterized ABC tra 100.0 9.4E-82 3.2E-86 784.3 62.3 553 673-1234 23-590 (598)
12 4a82_A Cystic fibrosis transme 100.0 2E-81 6.9E-86 779.0 62.5 556 675-1235 2-577 (578)
13 3g5u_A MCG1178, multidrug resi 100.0 1.9E-81 6.4E-86 839.1 56.8 580 45-627 691-1274(1284)
14 3b5x_A Lipid A export ATP-bind 100.0 2.6E-79 9E-84 761.4 71.4 551 675-1235 13-580 (582)
15 2yl4_A ATP-binding cassette SU 100.0 1.4E-79 4.7E-84 765.8 67.8 558 675-1235 7-584 (595)
16 3b60_A Lipid A export ATP-bind 100.0 2.8E-79 9.6E-84 761.1 69.0 552 674-1235 12-580 (582)
17 3bk7_A ABC transporter ATP-bin 100.0 6.2E-66 2.1E-70 636.2 29.7 438 388-1221 95-563 (607)
18 1yqt_A RNAse L inhibitor; ATP- 100.0 1.7E-65 5.9E-70 626.8 30.9 196 1010-1222 287-494 (538)
19 2iw3_A Elongation factor 3A; a 100.0 3.5E-64 1.2E-68 637.0 42.9 197 383-610 434-635 (986)
20 3ux8_A Excinuclease ABC, A sub 100.0 2.3E-64 7.7E-69 637.8 26.0 202 400-610 31-298 (670)
21 3nh6_A ATP-binding cassette SU 100.0 2.8E-63 9.5E-68 561.5 26.7 279 343-625 13-291 (306)
22 3ozx_A RNAse L inhibitor; ATP 100.0 9E-63 3.1E-67 600.6 29.1 196 1010-1221 269-477 (538)
23 3j16_B RLI1P; ribosome recycli 100.0 4.2E-62 1.4E-66 600.4 30.6 192 1014-1222 350-560 (608)
24 3nh6_A ATP-binding cassette SU 100.0 4.4E-61 1.5E-65 543.5 24.5 261 970-1234 14-289 (306)
25 2ff7_A Alpha-hemolysin translo 100.0 5.2E-53 1.8E-57 466.5 30.6 240 383-623 6-245 (247)
26 2ghi_A Transport protein; mult 100.0 6.7E-52 2.3E-56 461.3 29.0 240 383-624 16-255 (260)
27 2ixe_A Antigen peptide transpo 100.0 2.2E-51 7.6E-56 459.5 28.5 241 382-623 14-257 (271)
28 2ff7_A Alpha-hemolysin translo 100.0 3.2E-51 1.1E-55 452.2 26.9 225 1010-1235 7-246 (247)
29 1mv5_A LMRA, multidrug resista 100.0 4.2E-52 1.4E-56 459.2 18.0 235 385-622 2-237 (243)
30 2vf7_A UVRA2, excinuclease ABC 100.0 4.4E-50 1.5E-54 505.2 32.5 207 1009-1225 501-831 (842)
31 2ghi_A Transport protein; mult 100.0 4.9E-50 1.7E-54 446.2 26.2 224 1009-1234 16-254 (260)
32 2ixe_A Antigen peptide transpo 100.0 7.7E-50 2.6E-54 447.1 27.1 226 1008-1234 14-257 (271)
33 3pih_A Uvrabc system protein A 100.0 9.4E-50 3.2E-54 506.1 28.9 199 1028-1229 599-909 (916)
34 3gd7_A Fusion complex of cysti 100.0 2.3E-49 8E-54 461.4 25.9 234 381-617 16-249 (390)
35 1mv5_A LMRA, multidrug resista 100.0 3.8E-50 1.3E-54 443.5 17.8 221 1011-1234 2-238 (243)
36 2pze_A Cystic fibrosis transme 100.0 4.2E-48 1.4E-52 423.0 25.8 221 383-619 5-226 (229)
37 2cbz_A Multidrug resistance-as 100.0 2.2E-48 7.6E-53 427.2 23.5 225 384-624 3-230 (237)
38 3gd7_A Fusion complex of cysti 100.0 1.5E-48 5E-53 454.7 22.9 221 1007-1229 16-250 (390)
39 3tui_C Methionine import ATP-b 100.0 4.2E-48 1.4E-52 443.9 23.4 226 383-619 23-262 (366)
40 3gfo_A Cobalt import ATP-bindi 100.0 2.2E-47 7.4E-52 426.5 21.5 215 384-611 7-234 (275)
41 2cbz_A Multidrug resistance-as 100.0 4.7E-47 1.6E-51 416.6 22.5 211 1010-1235 3-230 (237)
42 3tif_A Uncharacterized ABC tra 100.0 2.4E-47 8.3E-52 418.4 19.8 214 385-609 2-233 (235)
43 2pze_A Cystic fibrosis transme 100.0 1.4E-46 4.8E-51 411.0 23.4 208 1009-1231 5-227 (229)
44 2r6f_A Excinuclease ABC subuni 100.0 4.1E-46 1.4E-50 467.4 30.7 203 1010-1222 629-943 (972)
45 1ji0_A ABC transporter; ATP bi 100.0 2.7E-46 9.4E-51 411.6 24.0 219 384-611 6-229 (240)
46 3tui_C Methionine import ATP-b 100.0 5.3E-46 1.8E-50 426.5 26.7 219 1009-1229 23-261 (366)
47 3fvq_A Fe(3+) IONS import ATP- 100.0 3.3E-46 1.1E-50 428.4 24.5 219 384-616 4-234 (359)
48 2olj_A Amino acid ABC transpor 100.0 5.5E-46 1.9E-50 412.9 24.6 215 384-612 24-250 (263)
49 4g1u_C Hemin import ATP-bindin 100.0 4.6E-46 1.6E-50 414.9 22.6 214 384-611 11-238 (266)
50 3rlf_A Maltose/maltodextrin im 100.0 3.1E-46 1E-50 431.4 21.7 219 384-618 3-231 (381)
51 3gfo_A Cobalt import ATP-bindi 100.0 7.9E-46 2.7E-50 413.9 23.8 209 1010-1222 7-234 (275)
52 3tif_A Uncharacterized ABC tra 100.0 8.3E-46 2.9E-50 406.2 22.6 208 1011-1220 2-233 (235)
53 1ji0_A ABC transporter; ATP bi 100.0 2.2E-45 7.4E-50 404.5 25.3 209 1010-1222 6-229 (240)
54 1b0u_A Histidine permease; ABC 100.0 7.6E-46 2.6E-50 413.0 21.6 216 384-612 6-244 (262)
55 2ygr_A Uvrabc system protein A 100.0 1.9E-44 6.4E-49 454.3 34.6 204 1010-1223 647-962 (993)
56 2pcj_A ABC transporter, lipopr 100.0 1.5E-45 5.2E-50 401.3 21.3 207 384-604 4-222 (224)
57 2yyz_A Sugar ABC transporter, 100.0 3.3E-45 1.1E-49 421.9 25.2 217 384-616 3-229 (359)
58 1g6h_A High-affinity branched- 100.0 3E-45 1E-49 407.6 23.5 214 384-607 7-239 (257)
59 2bbs_A Cystic fibrosis transme 100.0 2.4E-45 8.2E-50 413.2 22.4 231 357-611 17-248 (290)
60 1vpl_A ABC transporter, ATP-bi 100.0 2.4E-45 8.1E-50 406.5 22.0 213 383-610 14-235 (256)
61 2it1_A 362AA long hypothetical 100.0 2.5E-45 8.5E-50 423.4 22.0 217 384-616 3-229 (362)
62 1z47_A CYSA, putative ABC-tran 100.0 3.1E-45 1.1E-49 420.9 22.6 219 383-616 13-241 (355)
63 1v43_A Sugar-binding transport 100.0 7.4E-45 2.5E-49 420.9 24.9 217 384-616 11-237 (372)
64 2yz2_A Putative ABC transporte 100.0 6.6E-45 2.2E-49 406.7 23.5 213 385-611 3-228 (266)
65 2olj_A Amino acid ABC transpor 100.0 1.4E-44 4.7E-49 401.6 25.6 210 1010-1224 24-251 (263)
66 3d31_A Sulfate/molybdate ABC t 100.0 7E-45 2.4E-49 418.0 23.1 215 385-616 2-223 (348)
67 2ihy_A ABC transporter, ATP-bi 100.0 2.8E-45 9.7E-50 411.1 19.2 214 384-611 21-253 (279)
68 2onk_A Molybdate/tungstate ABC 100.0 5.4E-45 1.8E-49 400.1 20.6 209 385-612 2-218 (240)
69 1oxx_K GLCV, glucose, ABC tran 100.0 4.8E-45 1.7E-49 421.2 21.0 218 385-616 4-236 (353)
70 4g1u_C Hemin import ATP-bindin 100.0 1.4E-44 4.7E-49 403.1 22.7 208 1010-1222 11-238 (266)
71 1vpl_A ABC transporter, ATP-bi 100.0 3.7E-44 1.3E-48 397.0 25.5 209 1008-1222 13-236 (256)
72 3fvq_A Fe(3+) IONS import ATP- 100.0 2.2E-44 7.4E-49 413.3 24.3 215 1010-1229 4-236 (359)
73 1g29_1 MALK, maltose transport 100.0 1.1E-44 3.8E-49 420.5 21.6 217 384-616 3-235 (372)
74 3rlf_A Maltose/maltodextrin im 100.0 2.9E-44 9.8E-49 414.9 24.7 213 1010-1229 3-231 (381)
75 2qi9_C Vitamin B12 import ATP- 100.0 2.6E-44 8.8E-49 396.5 23.1 207 385-610 5-222 (249)
76 1b0u_A Histidine permease; ABC 100.0 4.6E-44 1.6E-48 398.6 24.8 210 1010-1224 6-245 (262)
77 2pcj_A ABC transporter, lipopr 100.0 7E-44 2.4E-48 388.2 22.9 201 1010-1215 4-222 (224)
78 1g6h_A High-affinity branched- 100.0 7.7E-44 2.6E-48 396.3 22.0 204 1010-1218 7-239 (257)
79 2d2e_A SUFC protein; ABC-ATPas 100.0 2.4E-44 8.3E-49 398.6 17.7 208 385-606 4-229 (250)
80 2it1_A 362AA long hypothetical 100.0 2.1E-43 7.3E-48 407.3 24.9 212 1010-1228 3-230 (362)
81 2yyz_A Sugar ABC transporter, 100.0 2.4E-43 8.3E-48 406.4 24.8 212 1010-1228 3-230 (359)
82 1z47_A CYSA, putative ABC-tran 100.0 3.1E-43 1.1E-47 404.3 25.4 213 1009-1227 13-241 (355)
83 2zu0_C Probable ATP-dependent 100.0 2.6E-43 9E-48 393.6 24.1 216 384-609 20-253 (267)
84 2bbs_A Cystic fibrosis transme 100.0 1.2E-43 4.1E-48 399.3 20.3 203 1008-1229 38-254 (290)
85 2onk_A Molybdate/tungstate ABC 100.0 2.2E-43 7.5E-48 387.3 21.9 203 1011-1223 2-218 (240)
86 2ihy_A ABC transporter, ATP-bi 100.0 1.5E-43 5E-48 397.2 20.1 208 1010-1222 21-253 (279)
87 3d31_A Sulfate/molybdate ABC t 100.0 3.7E-43 1.3E-47 403.7 23.7 210 1011-1228 2-224 (348)
88 2yz2_A Putative ABC transporte 100.0 6.2E-43 2.1E-47 390.7 24.4 207 1011-1222 3-228 (266)
89 1v43_A Sugar-binding transport 100.0 5.3E-43 1.8E-47 405.4 24.5 212 1010-1228 11-238 (372)
90 2pjz_A Hypothetical protein ST 100.0 1.8E-43 6.1E-48 392.7 19.5 208 385-611 2-216 (263)
91 2d2e_A SUFC protein; ABC-ATPas 100.0 4E-43 1.4E-47 388.8 21.8 220 1011-1233 4-245 (250)
92 2zu0_C Probable ATP-dependent 100.0 6.7E-43 2.3E-47 390.3 23.3 220 1010-1232 20-265 (267)
93 1g29_1 MALK, maltose transport 100.0 9.4E-43 3.2E-47 404.4 24.8 212 1010-1228 3-236 (372)
94 2nq2_C Hypothetical ABC transp 100.0 3.1E-43 1.1E-47 389.6 19.8 201 384-611 4-218 (253)
95 1oxx_K GLCV, glucose, ABC tran 100.0 4.4E-43 1.5E-47 404.8 21.6 213 1010-1227 3-236 (353)
96 2qi9_C Vitamin B12 import ATP- 100.0 1.2E-42 4.1E-47 383.2 22.1 201 1011-1221 5-222 (249)
97 2pjz_A Hypothetical protein ST 100.0 3.9E-42 1.3E-46 381.9 21.3 202 1011-1222 2-216 (263)
98 1sgw_A Putative ABC transporte 100.0 2.2E-42 7.6E-47 371.9 15.0 194 384-599 10-210 (214)
99 2nq2_C Hypothetical ABC transp 100.0 3.3E-41 1.1E-45 373.3 20.7 197 1010-1222 4-218 (253)
100 1sgw_A Putative ABC transporte 100.0 6.7E-41 2.3E-45 360.4 15.5 188 1010-1210 10-210 (214)
101 1tf7_A KAIC; homohexamer, hexa 100.0 6.2E-38 2.1E-42 385.2 1.8 168 1012-1209 259-444 (525)
102 2v9p_A Replication protein E1; 100.0 1.1E-39 3.8E-44 367.1 -19.2 240 314-624 35-276 (305)
103 2v9p_A Replication protein E1; 100.0 3.4E-38 1.2E-42 355.0 -13.2 229 946-1234 41-275 (305)
104 1yqt_A RNAse L inhibitor; ATP- 100.0 1.9E-34 6.7E-39 352.5 15.1 199 384-610 287-493 (538)
105 3bk7_A ABC transporter ATP-bin 100.0 2.4E-34 8.1E-39 354.9 15.8 199 384-610 357-563 (607)
106 3ozx_A RNAse L inhibitor; ATP 100.0 8.5E-34 2.9E-38 345.6 17.3 199 384-609 269-476 (538)
107 2iw3_A Elongation factor 3A; a 100.0 2.2E-33 7.5E-38 356.0 17.0 205 384-604 671-981 (986)
108 3j16_B RLI1P; ribosome recycli 100.0 1.1E-32 3.8E-37 339.1 15.7 198 388-611 350-560 (608)
109 3ux8_A Excinuclease ABC, A sub 100.0 1.9E-31 6.7E-36 336.9 14.6 199 1026-1228 31-305 (670)
110 3pih_A Uvrabc system protein A 100.0 1.8E-30 6.1E-35 329.8 17.5 207 401-619 598-910 (916)
111 2vf7_A UVRA2, excinuclease ABC 100.0 5.8E-29 2E-33 313.5 17.4 213 383-611 501-828 (842)
112 2r6f_A Excinuclease ABC subuni 100.0 1E-28 3.6E-33 310.3 16.8 209 384-611 629-943 (972)
113 4aby_A DNA repair protein RECN 100.0 1.1E-28 3.6E-33 295.5 15.0 201 402-603 50-381 (415)
114 4aby_A DNA repair protein RECN 100.0 5.6E-28 1.9E-32 289.2 18.3 185 1028-1213 50-380 (415)
115 2ygr_A Uvrabc system protein A 100.0 4E-28 1.4E-32 306.2 17.0 210 383-611 646-961 (993)
116 2npi_A Protein CLP1; CLP1-PCF1 99.9 8.4E-32 2.9E-36 321.5 -16.5 194 384-609 118-337 (460)
117 2npi_A Protein CLP1; CLP1-PCF1 99.9 4.1E-31 1.4E-35 315.6 -11.4 186 1011-1221 119-338 (460)
118 1e69_A Chromosome segregation 99.9 7E-26 2.4E-30 260.9 15.6 194 405-599 17-301 (322)
119 1e69_A Chromosome segregation 99.9 1.5E-25 5E-30 258.2 15.1 189 1030-1219 16-311 (322)
120 3b85_A Phosphate starvation-in 99.9 2.1E-27 7.3E-32 254.5 -4.6 158 400-598 13-171 (208)
121 3b85_A Phosphate starvation-in 99.9 9.9E-27 3.4E-31 249.3 -5.0 156 1027-1210 14-172 (208)
122 4gp7_A Metallophosphoesterase; 99.9 2.8E-25 9.4E-30 231.7 5.1 149 1031-1202 1-168 (171)
123 2pt7_A CAG-ALFA; ATPase, prote 99.9 8.9E-28 3E-32 276.2 -16.7 205 318-598 75-291 (330)
124 4gp7_A Metallophosphoesterase; 99.9 5.5E-25 1.9E-29 229.4 4.4 149 405-591 1-168 (171)
125 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 2.1E-23 7.2E-28 243.6 17.0 84 518-601 274-364 (365)
126 2pt7_A CAG-ALFA; ATPase, prote 99.9 7E-26 2.4E-30 260.4 -4.6 141 1013-1210 151-292 (330)
127 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 6.1E-23 2.1E-27 239.7 18.2 82 1131-1212 276-364 (365)
128 1ye8_A Protein THEP1, hypothet 99.9 8.4E-25 2.9E-29 228.8 2.2 148 1041-1213 2-160 (178)
129 1z6g_A Guanylate kinase; struc 99.9 3.9E-27 1.3E-31 255.7 -16.9 166 401-596 11-193 (218)
130 1ye8_A Protein THEP1, hypothet 99.9 8.5E-25 2.9E-29 228.8 1.0 147 415-601 2-159 (178)
131 1z6g_A Guanylate kinase; struc 99.9 1.1E-26 3.9E-31 252.0 -14.5 164 1027-1207 11-193 (218)
132 2dpy_A FLII, flagellum-specifi 99.9 1.3E-24 4.6E-29 258.1 -3.4 195 1009-1221 130-344 (438)
133 2dpy_A FLII, flagellum-specifi 99.9 8.5E-25 2.9E-29 259.8 -8.2 195 383-610 130-344 (438)
134 1tq4_A IIGP1, interferon-induc 99.9 2.5E-24 8.6E-29 252.3 -7.8 167 400-591 36-247 (413)
135 3b9q_A Chloroplast SRP recepto 99.8 8.7E-23 3E-27 231.3 -1.3 175 403-599 90-284 (302)
136 1tq4_A IIGP1, interferon-induc 99.8 2.2E-23 7.6E-28 244.3 -9.1 163 1027-1203 37-248 (413)
137 3b9q_A Chloroplast SRP recepto 99.8 2.8E-21 9.7E-26 218.9 8.3 171 1029-1211 90-285 (302)
138 3aez_A Pantothenate kinase; tr 99.8 1.8E-23 6E-28 238.1 -9.9 201 352-598 15-246 (312)
139 2o5v_A DNA replication and rep 99.8 2.6E-20 8.8E-25 215.1 14.1 82 523-609 265-355 (359)
140 3sop_A Neuronal-specific septi 99.8 1.7E-22 5.9E-27 225.5 -4.2 147 415-586 4-154 (270)
141 3aez_A Pantothenate kinase; tr 99.8 7.4E-23 2.5E-27 233.0 -7.4 172 1006-1209 39-246 (312)
142 2og2_A Putative signal recogni 99.8 6.8E-22 2.3E-26 227.7 -0.4 173 404-598 148-340 (359)
143 2o5v_A DNA replication and rep 99.8 4.1E-20 1.4E-24 213.4 14.4 82 1134-1220 265-355 (359)
144 1znw_A Guanylate kinase, GMP k 99.8 1.4E-22 4.9E-27 218.2 -6.9 168 400-595 9-202 (207)
145 2og2_A Putative signal recogni 99.8 2.2E-20 7.6E-25 215.1 9.4 169 1030-1210 148-341 (359)
146 2f1r_A Molybdopterin-guanine d 99.8 1.1E-22 3.9E-27 210.5 -8.8 111 1040-1156 3-125 (171)
147 2obl_A ESCN; ATPase, hydrolase 99.8 8.2E-21 2.8E-25 219.0 0.4 195 384-610 45-255 (347)
148 2eyu_A Twitching motility prot 99.8 1.6E-22 5.6E-27 224.5 -13.7 174 401-583 15-241 (261)
149 1znw_A Guanylate kinase, GMP k 99.8 3.7E-22 1.3E-26 214.9 -10.9 174 1026-1206 9-202 (207)
150 2f1r_A Molybdopterin-guanine d 99.8 1.2E-21 4E-26 202.9 -7.5 111 414-545 3-125 (171)
151 2eyu_A Twitching motility prot 99.8 2.5E-20 8.4E-25 207.0 2.6 131 1027-1206 15-146 (261)
152 2i3b_A HCR-ntpase, human cance 99.8 6.7E-22 2.3E-26 208.5 -10.9 158 1039-1214 1-169 (189)
153 2ewv_A Twitching motility prot 99.8 4.1E-22 1.4E-26 232.9 -14.7 175 401-584 126-353 (372)
154 3sop_A Neuronal-specific septi 99.8 1.3E-20 4.3E-25 210.4 -2.1 140 1041-1197 4-154 (270)
155 2obl_A ESCN; ATPase, hydrolase 99.8 2.4E-20 8.1E-25 215.1 -1.6 192 1010-1221 45-255 (347)
156 4ad8_A DNA repair protein RECN 99.8 1E-18 3.5E-23 214.0 12.8 77 522-598 395-474 (517)
157 2i3b_A HCR-ntpase, human cance 99.8 6.4E-21 2.2E-25 201.0 -6.8 158 413-603 1-169 (189)
158 4ad8_A DNA repair protein RECN 99.7 2E-18 6.8E-23 211.4 12.3 76 1133-1208 395-473 (517)
159 1cr0_A DNA primase/helicase; R 99.7 9.6E-19 3.3E-23 199.1 8.5 181 401-599 23-237 (296)
160 3qkt_A DNA double-strand break 99.7 1.1E-17 3.6E-22 193.9 16.7 76 520-595 245-327 (339)
161 1cr0_A DNA primase/helicase; R 99.7 1.6E-18 5.5E-23 197.3 9.5 177 1027-1210 23-237 (296)
162 2ewv_A Twitching motility prot 99.7 1.7E-21 5.9E-26 227.6 -15.9 161 1027-1195 126-353 (372)
163 2o8b_B DNA mismatch repair pro 99.7 2.7E-18 9.3E-23 222.5 11.6 171 383-606 749-938 (1022)
164 2gza_A Type IV secretion syste 99.7 1.7E-22 5.9E-27 235.5 -25.1 226 304-537 49-301 (361)
165 2o8b_B DNA mismatch repair pro 99.7 1.4E-18 4.7E-23 225.2 8.5 172 1009-1218 749-939 (1022)
166 3qkt_A DNA double-strand break 99.7 3.8E-17 1.3E-21 189.3 18.2 75 1132-1206 246-327 (339)
167 1lvg_A Guanylate kinase, GMP k 99.7 3E-21 1E-25 206.1 -15.1 158 411-596 2-173 (198)
168 2jeo_A Uridine-cytidine kinase 99.7 3.9E-19 1.3E-23 196.5 -0.6 162 1025-1222 11-188 (245)
169 1lvg_A Guanylate kinase, GMP k 99.7 1.5E-20 5.1E-25 200.7 -12.3 159 1036-1221 1-183 (198)
170 1tf7_A KAIC; homohexamer, hexa 99.7 1.1E-17 3.9E-22 205.2 10.5 152 407-598 275-444 (525)
171 1w1w_A Structural maintenance 99.7 4.9E-17 1.7E-21 194.8 13.8 73 523-595 333-410 (430)
172 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 4.7E-17 1.6E-21 163.9 11.5 88 512-599 41-142 (148)
173 1ewq_A DNA mismatch repair pro 99.7 9.8E-18 3.3E-22 211.0 7.7 159 382-602 548-716 (765)
174 2jeo_A Uridine-cytidine kinase 99.7 9.2E-19 3.1E-23 193.5 -2.3 160 399-598 11-180 (245)
175 3thx_A DNA mismatch repair pro 99.7 1.5E-16 5E-21 203.6 17.5 168 383-609 630-812 (934)
176 1pzn_A RAD51, DNA repair and r 99.7 2.2E-18 7.6E-23 199.7 0.5 167 401-609 118-314 (349)
177 1lw7_A Transcriptional regulat 99.7 3.4E-19 1.2E-23 208.8 -6.7 176 402-609 157-354 (365)
178 3szr_A Interferon-induced GTP- 99.7 8E-19 2.7E-23 217.9 -4.7 190 1010-1220 10-236 (608)
179 4a74_A DNA repair and recombin 99.7 1.2E-17 4.1E-22 182.4 4.0 147 409-597 21-200 (231)
180 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 1E-16 3.5E-21 161.4 10.3 87 1123-1209 41-141 (148)
181 3asz_A Uridine kinase; cytidin 99.7 3E-19 1E-23 192.7 -9.4 140 410-582 3-161 (211)
182 1ewq_A DNA mismatch repair pro 99.7 3.5E-17 1.2E-21 206.0 7.7 147 1008-1199 548-704 (765)
183 1pzn_A RAD51, DNA repair and r 99.7 3.7E-18 1.3E-22 197.8 -1.6 166 1028-1220 119-314 (349)
184 2gza_A Type IV secretion syste 99.7 1.4E-19 5E-24 210.8 -13.6 133 1012-1147 137-300 (361)
185 3thx_A DNA mismatch repair pro 99.7 3.1E-16 1.1E-20 200.7 15.7 168 1009-1220 630-812 (934)
186 1w1w_A Structural maintenance 99.7 2.7E-16 9.2E-21 188.4 13.8 73 1134-1206 333-410 (430)
187 2ehv_A Hypothetical protein PH 99.7 2.8E-18 9.5E-23 190.0 -3.6 179 385-596 7-207 (251)
188 3jvv_A Twitching mobility prot 99.7 2.4E-17 8.2E-22 190.5 3.8 147 1014-1208 92-246 (356)
189 1rj9_A FTSY, signal recognitio 99.7 3.8E-17 1.3E-21 185.0 5.4 149 412-584 101-260 (304)
190 1lw7_A Transcriptional regulat 99.7 1E-19 3.5E-24 213.2 -16.4 178 1028-1222 157-356 (365)
191 3szr_A Interferon-induced GTP- 99.6 2E-18 6.8E-23 214.3 -6.2 190 384-609 10-236 (608)
192 1rj9_A FTSY, signal recognitio 99.6 6.2E-17 2.1E-21 183.3 6.0 161 1038-1209 101-284 (304)
193 3asz_A Uridine kinase; cytidin 99.6 1.9E-18 6.5E-23 186.4 -8.1 135 1035-1193 2-161 (211)
194 4a74_A DNA repair and recombin 99.6 1E-16 3.6E-21 174.9 5.2 146 1035-1208 21-200 (231)
195 2ehv_A Hypothetical protein PH 99.6 8.9E-17 3.1E-21 177.8 4.6 180 1011-1206 7-206 (251)
196 2qnr_A Septin-2, protein NEDD5 99.6 8.7E-18 3E-22 190.9 -3.8 163 388-584 2-169 (301)
197 3jvv_A Twitching mobility prot 99.6 8.6E-17 2.9E-21 185.9 4.0 147 388-597 92-246 (356)
198 1pui_A ENGB, probable GTP-bind 99.6 1.5E-17 5E-22 179.0 -3.2 168 385-570 4-197 (210)
199 2qag_C Septin-7; cell cycle, c 99.6 3.9E-17 1.3E-21 192.2 -1.8 166 383-585 10-180 (418)
200 3kta_B Chromosome segregation 99.6 3.1E-15 1.1E-19 154.6 11.0 79 521-599 62-146 (173)
201 3thx_B DNA mismatch repair pro 99.6 6.2E-16 2.1E-20 197.2 7.0 167 384-599 640-814 (918)
202 3kta_B Chromosome segregation 99.6 3.1E-15 1.1E-19 154.6 10.9 79 1132-1210 62-146 (173)
203 1odf_A YGR205W, hypothetical 3 99.6 1.6E-17 5.4E-22 187.1 -7.0 129 412-558 30-169 (290)
204 1pui_A ENGB, probable GTP-bind 99.6 2.3E-16 7.9E-21 169.6 1.5 158 1011-1182 4-198 (210)
205 2w0m_A SSO2452; RECA, SSPF, un 99.6 3.2E-16 1.1E-20 171.3 1.3 165 1026-1208 9-192 (235)
206 1odf_A YGR205W, hypothetical 3 99.6 1.3E-16 4.4E-21 179.6 -2.1 114 1038-1169 30-169 (290)
207 2w0m_A SSO2452; RECA, SSPF, un 99.6 1.1E-15 3.9E-20 166.9 5.4 166 400-598 9-193 (235)
208 2qag_C Septin-7; cell cycle, c 99.6 1.5E-16 5.1E-21 187.2 -2.0 160 1009-1196 10-180 (418)
209 2qnr_A Septin-2, protein NEDD5 99.6 1.3E-16 4.4E-21 181.3 -3.6 157 1014-1195 2-169 (301)
210 1wb9_A DNA mismatch repair pro 99.5 2.1E-15 7.3E-20 190.9 5.7 167 384-604 577-752 (800)
211 3thx_B DNA mismatch repair pro 99.5 5E-15 1.7E-19 188.9 7.1 152 1009-1202 639-805 (918)
212 1zp6_A Hypothetical protein AT 99.5 8.2E-16 2.8E-20 162.8 -1.2 145 1035-1192 5-159 (191)
213 3c8u_A Fructokinase; YP_612366 99.5 4.3E-17 1.5E-21 175.4 -12.0 140 1036-1194 19-184 (208)
214 1s96_A Guanylate kinase, GMP k 99.5 1.6E-15 5.5E-20 163.7 0.2 150 1033-1222 10-161 (219)
215 1s96_A Guanylate kinase, GMP k 99.5 1.1E-15 3.7E-20 165.0 -1.3 143 407-609 10-159 (219)
216 1nlf_A Regulatory protein REPA 99.5 4E-14 1.4E-18 159.4 10.7 151 409-585 26-184 (279)
217 2qag_B Septin-6, protein NEDD5 99.5 2E-15 7E-20 176.4 -0.1 179 384-580 16-217 (427)
218 2cvh_A DNA repair and recombin 99.5 5E-14 1.7E-18 152.4 10.4 152 400-597 6-185 (220)
219 2cvh_A DNA repair and recombin 99.5 2.4E-14 8.2E-19 154.9 7.7 151 1027-1208 7-185 (220)
220 1zp6_A Hypothetical protein AT 99.5 1.4E-15 4.9E-20 160.9 -2.7 139 409-569 5-147 (191)
221 1nij_A Hypothetical protein YJ 99.5 2.1E-16 7.2E-21 181.2 -10.9 148 413-583 4-190 (318)
222 1wb9_A DNA mismatch repair pro 99.5 1.2E-14 4.1E-19 184.0 4.0 166 1009-1213 576-750 (800)
223 1nlf_A Regulatory protein REPA 99.5 1E-13 3.6E-18 156.0 10.1 146 1035-1196 26-184 (279)
224 3c8u_A Fructokinase; YP_612366 99.4 2.4E-16 8.2E-21 169.5 -12.3 138 410-584 19-160 (208)
225 2qm8_A GTPase/ATPase; G protei 99.4 1.1E-15 3.9E-20 176.1 -7.4 164 1011-1181 30-259 (337)
226 1nij_A Hypothetical protein YJ 99.4 2.3E-15 8E-20 172.4 -6.6 144 1040-1194 5-190 (318)
227 2bdt_A BH3686; alpha-beta prot 99.4 1.3E-15 4.5E-20 161.0 -10.2 162 1039-1220 2-183 (189)
228 2yhs_A FTSY, cell division pro 99.4 2.9E-13 1E-17 159.9 8.1 154 403-580 283-447 (503)
229 2qag_B Septin-6, protein NEDD5 99.4 2.4E-14 8.1E-19 167.5 -1.8 167 1010-1192 16-218 (427)
230 2yhs_A FTSY, cell division pro 99.4 7.7E-13 2.6E-17 156.3 10.3 152 1030-1195 284-450 (503)
231 1n0w_A DNA repair protein RAD5 99.4 4.9E-13 1.7E-17 146.9 7.8 146 409-597 20-209 (243)
232 2qm8_A GTPase/ATPase; G protei 99.4 1.7E-15 5.8E-20 174.6 -12.8 177 386-569 31-258 (337)
233 2bdt_A BH3686; alpha-beta prot 99.3 1.3E-16 4.6E-21 168.7 -22.0 166 413-609 2-183 (189)
234 2rcn_A Probable GTPase ENGC; Y 99.3 6.9E-13 2.3E-17 152.2 6.2 123 401-539 204-329 (358)
235 3e70_C DPA, signal recognition 99.3 1.2E-12 4.2E-17 149.4 7.3 175 1035-1221 125-320 (328)
236 1p9r_A General secretion pathw 99.3 5.1E-15 1.8E-19 174.3 -13.6 129 402-547 158-315 (418)
237 2bbw_A Adenylate kinase 4, AK4 99.3 6.7E-14 2.3E-18 154.5 -4.2 147 412-571 26-198 (246)
238 3e70_C DPA, signal recognition 99.3 2.4E-12 8.2E-17 147.0 7.4 163 409-599 125-306 (328)
239 1htw_A HI0065; nucleotide-bind 99.3 1.5E-13 5.2E-18 140.1 -2.5 88 388-484 11-99 (158)
240 1n0w_A DNA repair protein RAD5 99.3 3.1E-12 1.1E-16 140.5 7.8 145 1035-1208 20-209 (243)
241 3auy_A DNA double-strand break 99.3 6.6E-12 2.2E-16 147.1 10.3 74 522-595 279-359 (371)
242 3lda_A DNA repair protein RAD5 99.3 3.9E-12 1.3E-16 149.0 7.5 147 409-598 174-364 (400)
243 1htw_A HI0065; nucleotide-bind 99.3 2.3E-13 8E-18 138.8 -2.5 86 1014-1108 11-96 (158)
244 1p9r_A General secretion pathw 99.3 1.5E-14 5.2E-19 170.3 -13.2 137 1012-1157 145-314 (418)
245 1sxj_E Activator 1 40 kDa subu 99.2 7E-12 2.4E-16 146.0 9.0 137 1040-1196 37-177 (354)
246 2oap_1 GSPE-2, type II secreti 99.2 3.3E-14 1.1E-18 172.0 -11.5 173 401-588 248-457 (511)
247 3auy_A DNA double-strand break 99.2 1.4E-11 4.9E-16 144.2 10.5 74 1133-1206 279-359 (371)
248 1sxj_E Activator 1 40 kDa subu 99.2 5.4E-12 1.9E-16 147.0 6.7 138 415-585 38-177 (354)
249 2bbw_A Adenylate kinase 4, AK4 99.2 2.9E-13 9.8E-18 149.4 -4.4 133 1038-1181 26-197 (246)
250 2oap_1 GSPE-2, type II secreti 99.2 5.9E-14 2E-18 169.7 -12.7 158 1027-1200 248-458 (511)
251 2kjq_A DNAA-related protein; s 99.2 1.5E-11 5.1E-16 124.4 6.9 91 402-581 30-124 (149)
252 2rcn_A Probable GTPase ENGC; Y 99.2 2.1E-12 7.2E-17 148.2 0.5 114 1028-1149 205-328 (358)
253 2kjq_A DNAA-related protein; s 99.2 1.8E-11 6.1E-16 123.8 6.7 92 1028-1193 30-125 (149)
254 1sq5_A Pantothenate kinase; P- 99.2 4.9E-13 1.7E-17 152.5 -6.3 141 1007-1167 34-199 (308)
255 2x8a_A Nuclear valosin-contain 99.2 8.3E-14 2.8E-18 156.0 -12.9 143 401-566 34-190 (274)
256 3lda_A DNA repair protein RAD5 99.1 2.4E-11 8.3E-16 142.2 6.7 146 1035-1209 174-364 (400)
257 2yv5_A YJEQ protein; hydrolase 99.1 2.8E-12 9.5E-17 145.6 -1.4 115 408-536 160-300 (302)
258 3ec2_A DNA replication protein 99.1 3.8E-11 1.3E-15 125.6 7.1 111 1033-1195 32-145 (180)
259 3ec2_A DNA replication protein 99.1 8.1E-12 2.8E-16 130.7 1.6 111 407-583 32-144 (180)
260 1sq5_A Pantothenate kinase; P- 99.1 1E-12 3.4E-17 149.9 -7.5 140 382-556 35-199 (308)
261 3lnc_A Guanylate kinase, GMP k 99.0 2.9E-13 9.8E-18 147.9 -15.2 135 401-569 15-176 (231)
262 1udx_A The GTP-binding protein 99.0 5E-11 1.7E-15 140.1 2.6 141 1029-1190 147-305 (416)
263 2x8a_A Nuclear valosin-contain 99.0 2.8E-13 9.5E-18 151.7 -16.1 143 1027-1177 34-190 (274)
264 3lnc_A Guanylate kinase, GMP k 99.0 5.5E-13 1.9E-17 145.7 -13.6 186 1027-1220 15-223 (231)
265 1ls1_A Signal recognition part 99.0 3E-10 1E-14 128.2 7.6 141 1011-1190 77-219 (295)
266 1udx_A The GTP-binding protein 99.0 3.2E-11 1.1E-15 141.8 -2.0 153 403-580 147-306 (416)
267 2px0_A Flagellar biosynthesis 99.0 8.8E-10 3E-14 124.3 9.5 138 1037-1212 103-246 (296)
268 1u0l_A Probable GTPase ENGC; p 99.0 7.8E-11 2.7E-15 133.7 0.8 103 408-511 164-290 (301)
269 3tr0_A Guanylate kinase, GMP k 98.9 9.3E-11 3.2E-15 125.2 -1.5 125 1033-1161 1-127 (205)
270 1vma_A Cell division protein F 98.9 6.1E-10 2.1E-14 125.8 4.2 111 406-568 97-210 (306)
271 1cke_A CK, MSSA, protein (cyti 98.9 2.5E-11 8.5E-16 131.9 -7.1 129 412-552 4-151 (227)
272 3euj_A Chromosome partition pr 98.9 6.2E-10 2.1E-14 132.4 4.1 64 386-455 8-71 (483)
273 1vma_A Cell division protein F 98.9 2.9E-09 9.8E-14 120.4 9.3 98 1032-1163 97-197 (306)
274 1cke_A CK, MSSA, protein (cyti 98.9 7E-11 2.4E-15 128.3 -4.4 121 1038-1163 4-151 (227)
275 2px0_A Flagellar biosynthesis 98.9 2.6E-09 8.8E-14 120.5 8.1 138 411-601 103-246 (296)
276 4e22_A Cytidylate kinase; P-lo 98.8 2.7E-10 9.1E-15 126.0 -0.4 79 1027-1108 18-114 (252)
277 3euj_A Chromosome partition pr 98.8 6.6E-10 2.2E-14 132.2 2.8 54 1027-1081 18-71 (483)
278 1ls1_A Signal recognition part 98.8 7.1E-09 2.4E-13 117.0 10.9 139 385-576 77-216 (295)
279 1t9h_A YLOQ, probable GTPase E 98.8 2.3E-10 8E-15 128.9 -1.5 73 408-482 168-248 (307)
280 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 1.9E-11 6.3E-16 142.4 -11.0 165 1035-1217 16-209 (392)
281 2yv5_A YJEQ protein; hydrolase 98.8 1.7E-10 5.7E-15 130.9 -3.5 70 1035-1107 161-240 (302)
282 2ius_A DNA translocase FTSK; n 98.8 4.2E-10 1.4E-14 134.8 -0.3 156 1031-1194 159-343 (512)
283 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 7.7E-12 2.6E-16 145.6 -15.0 169 409-605 16-208 (392)
284 4e22_A Cytidylate kinase; P-lo 98.8 3.2E-10 1.1E-14 125.4 -2.6 98 402-509 19-134 (252)
285 1iy2_A ATP-dependent metallopr 98.8 1.7E-11 5.8E-16 137.8 -13.8 132 386-544 51-190 (278)
286 3tr0_A Guanylate kinase, GMP k 98.8 1.1E-09 3.7E-14 116.8 0.6 73 407-483 1-74 (205)
287 1in4_A RUVB, holliday junction 98.7 1.7E-11 5.9E-16 141.5 -14.7 168 387-586 21-206 (334)
288 1in4_A RUVB, holliday junction 98.7 1.1E-10 3.8E-15 134.7 -8.1 148 1013-1181 21-193 (334)
289 2ius_A DNA translocase FTSK; n 98.7 8.4E-10 2.9E-14 132.2 -1.6 158 405-583 159-343 (512)
290 1ixz_A ATP-dependent metallopr 98.7 2.5E-11 8.4E-16 134.5 -14.2 138 385-551 26-171 (254)
291 2zr9_A Protein RECA, recombina 98.7 2.8E-08 9.5E-13 114.7 10.6 151 401-604 47-237 (349)
292 3a00_A Guanylate kinase, GMP k 98.7 6.4E-10 2.2E-14 116.9 -2.9 128 413-549 1-169 (186)
293 1iy2_A ATP-dependent metallopr 98.7 3.3E-11 1.1E-15 135.4 -14.0 138 1012-1162 51-195 (278)
294 1oix_A RAS-related protein RAB 98.7 1.5E-09 5.1E-14 114.5 -0.9 134 1041-1180 31-189 (191)
295 2zr9_A Protein RECA, recombina 98.7 4.2E-08 1.4E-12 113.2 10.7 143 1035-1215 57-237 (349)
296 2dr3_A UPF0273 protein PH0284; 98.7 3.6E-09 1.2E-13 116.1 1.7 168 400-596 9-196 (247)
297 2dy1_A Elongation factor G; tr 98.7 2.7E-09 9.3E-14 133.8 0.4 135 1033-1196 3-139 (665)
298 1oix_A RAS-related protein RAB 98.6 2.9E-10 1E-14 120.0 -7.9 134 415-568 31-188 (191)
299 1qhl_A Protein (cell division 98.6 9.1E-10 3.1E-14 118.7 -4.6 75 384-469 9-91 (227)
300 1u0l_A Probable GTPase ENGC; p 98.6 7.1E-09 2.4E-13 117.6 2.4 66 1034-1099 164-232 (301)
301 2dr3_A UPF0273 protein PH0284; 98.6 2E-08 6.8E-13 110.1 5.9 162 1028-1207 11-196 (247)
302 3k1j_A LON protease, ATP-depen 98.6 1.3E-09 4.4E-14 135.8 -4.9 157 400-568 47-227 (604)
303 2r6a_A DNAB helicase, replicat 98.6 4.4E-08 1.5E-12 117.7 7.9 177 401-599 191-401 (454)
304 1t9h_A YLOQ, probable GTPase E 98.6 6.1E-09 2.1E-13 117.3 0.4 73 1034-1108 168-248 (307)
305 2r6a_A DNAB helicase, replicat 98.6 3.4E-08 1.2E-12 118.7 5.7 172 1027-1210 191-401 (454)
306 1qhl_A Protein (cell division 98.6 1.9E-09 6.7E-14 116.1 -4.7 75 1010-1095 9-91 (227)
307 1ixz_A ATP-dependent metallopr 98.6 2.6E-10 9E-15 126.2 -11.9 139 1012-1163 27-172 (254)
308 3ney_A 55 kDa erythrocyte memb 98.5 5.9E-09 2E-13 109.5 -1.5 83 407-498 13-108 (197)
309 3k1j_A LON protease, ATP-depen 98.5 2.9E-08 1E-12 123.5 4.4 144 1027-1179 48-227 (604)
310 2f9l_A RAB11B, member RAS onco 98.5 2.9E-08 9.8E-13 105.3 2.5 134 1041-1180 7-165 (199)
311 3ney_A 55 kDa erythrocyte memb 98.5 2.2E-08 7.4E-13 105.2 0.7 69 1034-1107 14-95 (197)
312 3a00_A Guanylate kinase, GMP k 98.5 1.3E-08 4.4E-13 106.9 -1.4 116 1039-1160 1-169 (186)
313 2dy1_A Elongation factor G; tr 98.4 4E-08 1.4E-12 123.2 2.4 133 407-585 3-139 (665)
314 1svm_A Large T antigen; AAA+ f 98.4 2.5E-09 8.6E-14 124.1 -9.0 137 401-552 157-312 (377)
315 1kgd_A CASK, peripheral plasma 98.4 2.7E-08 9.3E-13 103.8 -0.6 80 411-497 3-93 (180)
316 1kgd_A CASK, peripheral plasma 98.4 2.6E-08 8.9E-13 104.0 -1.2 67 1037-1106 3-80 (180)
317 3uie_A Adenylyl-sulfate kinase 98.4 3.5E-08 1.2E-12 104.8 -0.4 116 1027-1161 13-132 (200)
318 1svm_A Large T antigen; AAA+ f 98.4 4.1E-09 1.4E-13 122.3 -8.8 129 1027-1163 157-312 (377)
319 1zu4_A FTSY; GTPase, signal re 98.3 5.5E-07 1.9E-11 102.5 7.6 81 1028-1108 94-185 (320)
320 2qt1_A Nicotinamide riboside k 98.3 8.9E-08 3E-12 102.2 0.6 52 408-485 16-67 (207)
321 2f9l_A RAB11B, member RAS onco 98.3 1.9E-07 6.7E-12 98.8 2.8 135 415-569 7-165 (199)
322 2ce7_A Cell division protein F 98.3 1E-06 3.6E-11 105.2 9.0 113 1028-1196 40-167 (476)
323 3nwj_A ATSK2; P loop, shikimat 98.2 1.3E-07 4.4E-12 103.7 -0.4 52 384-437 17-72 (250)
324 2ce7_A Cell division protein F 98.2 1.4E-06 4.7E-11 104.1 8.2 114 401-585 39-167 (476)
325 3t34_A Dynamin-related protein 98.2 8.2E-07 2.8E-11 103.3 6.2 165 1027-1196 25-216 (360)
326 4eun_A Thermoresistant glucoki 98.2 2E-07 6.8E-12 99.0 0.5 61 407-472 23-83 (200)
327 3t34_A Dynamin-related protein 98.2 1.1E-06 3.6E-11 102.4 6.7 46 401-449 25-72 (360)
328 4eun_A Thermoresistant glucoki 98.2 2.7E-07 9.3E-12 97.9 1.2 72 1031-1107 21-93 (200)
329 3uie_A Adenylyl-sulfate kinase 98.2 6.6E-08 2.3E-12 102.7 -3.9 60 389-452 4-65 (200)
330 3nwj_A ATSK2; P loop, shikimat 98.2 1.7E-07 5.7E-12 102.8 -0.9 52 1010-1063 17-72 (250)
331 2qtf_A Protein HFLX, GTP-bindi 98.2 1E-06 3.5E-11 102.2 5.5 142 415-569 181-351 (364)
332 2dhr_A FTSH; AAA+ protein, hex 98.2 3.7E-08 1.3E-12 118.4 -6.8 139 386-553 42-188 (499)
333 3tau_A Guanylate kinase, GMP k 98.2 1.5E-07 5.2E-12 100.6 -1.4 71 411-485 6-87 (208)
334 2qtf_A Protein HFLX, GTP-bindi 98.2 1.3E-06 4.6E-11 101.2 6.4 130 1041-1181 181-352 (364)
335 3vaa_A Shikimate kinase, SK; s 98.2 6.5E-07 2.2E-11 94.9 3.1 45 1019-1063 5-49 (199)
336 3cr8_A Sulfate adenylyltranfer 98.1 8.4E-08 2.9E-12 116.7 -4.5 72 408-484 364-447 (552)
337 2j41_A Guanylate kinase; GMP, 98.1 4.9E-07 1.7E-11 96.1 2.0 62 1034-1098 1-62 (207)
338 1zu4_A FTSY; GTPase, signal re 98.1 7.2E-07 2.5E-11 101.5 3.4 72 402-473 94-175 (320)
339 2j41_A Guanylate kinase; GMP, 98.1 8.1E-07 2.8E-11 94.4 3.2 61 408-471 1-61 (207)
340 3hr8_A Protein RECA; alpha and 98.1 2.4E-06 8.4E-11 98.0 7.3 68 401-471 47-117 (356)
341 2qt1_A Nicotinamide riboside k 98.1 1.5E-06 5.2E-11 92.5 4.9 48 1031-1101 13-60 (207)
342 3vaa_A Shikimate kinase, SK; s 98.1 1.3E-06 4.3E-11 92.6 3.7 46 392-437 4-49 (199)
343 3ice_A Transcription terminati 98.1 5E-07 1.7E-11 102.7 0.4 57 1006-1064 129-199 (422)
344 3ice_A Transcription terminati 98.1 1E-07 3.5E-12 108.3 -5.4 55 381-437 130-198 (422)
345 2xau_A PRE-mRNA-splicing facto 98.0 2.5E-06 8.4E-11 108.7 5.4 144 1035-1198 105-257 (773)
346 2e87_A Hypothetical protein PH 98.0 8.4E-06 2.9E-10 94.6 9.1 123 1040-1194 168-293 (357)
347 3hr8_A Protein RECA; alpha and 98.0 1.8E-05 6.3E-10 90.8 11.7 61 1035-1098 57-118 (356)
348 2vp4_A Deoxynucleoside kinase; 98.0 3.5E-07 1.2E-11 99.4 -3.4 64 1033-1100 14-87 (230)
349 3kta_A Chromosome segregation 98.0 1.7E-06 5.8E-11 90.1 1.8 66 404-470 18-89 (182)
350 1jjv_A Dephospho-COA kinase; P 98.0 2.2E-06 7.7E-11 91.1 2.7 69 524-595 60-131 (206)
351 2dhr_A FTSH; AAA+ protein, hex 98.0 8.4E-08 2.9E-12 115.3 -9.5 136 1013-1164 43-188 (499)
352 3tqc_A Pantothenate kinase; bi 98.0 1.8E-07 6.2E-12 106.0 -6.3 126 400-556 73-211 (321)
353 2e87_A Hypothetical protein PH 97.9 1.2E-05 4.1E-10 93.3 8.7 61 522-583 230-293 (357)
354 1jjv_A Dephospho-COA kinase; P 97.9 4E-06 1.4E-10 89.2 4.0 126 1041-1207 4-132 (206)
355 3tau_A Guanylate kinase, GMP k 97.9 1.1E-06 3.7E-11 93.9 -0.4 64 1037-1103 6-80 (208)
356 2xau_A PRE-mRNA-splicing facto 97.9 1.3E-05 4.3E-10 102.2 9.3 65 522-586 189-256 (773)
357 2ffh_A Protein (FFH); SRP54, s 97.9 2.1E-05 7.2E-10 92.4 10.3 158 1013-1191 79-246 (425)
358 3kta_A Chromosome segregation 97.9 2.8E-06 9.6E-11 88.4 2.5 66 1030-1096 18-89 (182)
359 2vp4_A Deoxynucleoside kinase; 97.9 5.5E-07 1.9E-11 97.8 -4.3 64 407-474 14-87 (230)
360 2z43_A DNA repair and recombin 97.9 7.5E-06 2.6E-10 93.7 4.7 28 409-436 103-130 (324)
361 3m6a_A ATP-dependent protease 97.8 4.7E-06 1.6E-10 102.1 2.3 59 1013-1075 86-144 (543)
362 3kl4_A SRP54, signal recogniti 97.8 3.8E-05 1.3E-09 90.3 9.9 40 1038-1077 96-135 (433)
363 2ffh_A Protein (FFH); SRP54, s 97.8 7E-05 2.4E-09 87.9 11.0 160 387-580 79-246 (425)
364 1fnn_A CDC6P, cell division co 97.7 8.8E-05 3E-09 86.7 11.5 123 1037-1196 40-172 (389)
365 1knq_A Gluconate kinase; ALFA/ 97.7 6.6E-06 2.2E-10 85.0 1.4 55 1037-1097 6-61 (175)
366 3cr8_A Sulfate adenylyltranfer 97.7 2.2E-06 7.4E-11 104.3 -2.8 45 1034-1078 364-410 (552)
367 1knq_A Gluconate kinase; ALFA/ 97.7 6.1E-06 2.1E-10 85.2 0.8 38 411-452 6-43 (175)
368 4a1f_A DNAB helicase, replicat 97.7 7.4E-05 2.5E-09 85.1 9.6 107 1028-1166 35-141 (338)
369 4a1f_A DNAB helicase, replicat 97.7 3.4E-05 1.1E-09 87.9 6.2 123 401-579 34-163 (338)
370 1rz3_A Hypothetical protein rb 97.7 1.2E-05 4.2E-10 85.1 2.4 49 1035-1083 18-66 (201)
371 3kl4_A SRP54, signal recogniti 97.6 5.5E-05 1.9E-09 89.0 7.3 39 412-450 96-134 (433)
372 1rz3_A Hypothetical protein rb 97.6 1.6E-05 5.5E-10 84.2 1.9 46 409-454 18-63 (201)
373 1fnn_A CDC6P, cell division co 97.6 0.00025 8.6E-09 82.8 12.3 45 540-585 124-172 (389)
374 2z43_A DNA repair and recombin 97.5 2.9E-05 9.9E-10 88.8 3.2 128 1035-1193 103-258 (324)
375 3tqc_A Pantothenate kinase; bi 97.5 1.9E-05 6.4E-10 89.4 1.1 50 1027-1076 74-131 (321)
376 1v5w_A DMC1, meiotic recombina 97.5 6.8E-05 2.3E-09 86.3 4.9 28 409-436 118-145 (343)
377 3llm_A ATP-dependent RNA helic 97.4 0.00013 4.4E-09 79.2 6.8 132 1035-1187 72-212 (235)
378 1sxj_C Activator 1 40 kDa subu 97.4 2.9E-05 9.8E-10 89.5 1.2 47 1027-1073 32-80 (340)
379 2pez_A Bifunctional 3'-phospho 97.4 2.2E-05 7.6E-10 81.3 -0.7 42 1037-1079 3-46 (179)
380 3b9p_A CG5977-PA, isoform A; A 97.3 0.00039 1.3E-08 78.2 8.8 32 525-556 97-128 (297)
381 3b9p_A CG5977-PA, isoform A; A 97.3 0.00054 1.8E-08 77.0 9.9 116 1037-1206 52-187 (297)
382 2pez_A Bifunctional 3'-phospho 97.3 3.1E-05 1.1E-09 80.2 -0.9 40 411-451 3-44 (179)
383 1f6b_A SAR1; gtpases, N-termin 97.3 6.6E-05 2.3E-09 79.1 1.6 58 1017-1077 6-71 (198)
384 1v5w_A DMC1, meiotic recombina 97.3 0.00035 1.2E-08 80.3 7.8 131 1035-1193 118-274 (343)
385 2z4s_A Chromosomal replication 97.2 0.0003 1E-08 83.8 7.2 43 540-582 193-237 (440)
386 1sxj_C Activator 1 40 kDa subu 97.2 5.3E-05 1.8E-09 87.2 0.6 43 400-442 31-75 (340)
387 3lxx_A GTPase IMAP family memb 97.2 0.0011 3.9E-08 71.8 11.1 118 1041-1191 31-154 (239)
388 2z4s_A Chromosomal replication 97.2 0.00011 3.7E-09 87.6 3.1 66 1152-1217 194-264 (440)
389 3lxx_A GTPase IMAP family memb 97.2 0.0014 4.7E-08 71.1 11.7 29 415-443 31-59 (239)
390 1mky_A Probable GTP-binding pr 97.2 0.00017 5.7E-09 86.1 4.4 68 1040-1107 181-261 (439)
391 1lv7_A FTSH; alpha/beta domain 97.2 0.0013 4.5E-08 72.1 11.1 46 1028-1077 36-81 (257)
392 1ypw_A Transitional endoplasmi 97.2 0.00031 1.1E-08 89.9 6.9 32 1034-1065 233-264 (806)
393 3m6a_A ATP-dependent protease 97.2 6.9E-05 2.3E-09 91.7 0.7 59 387-449 86-144 (543)
394 1ypw_A Transitional endoplasmi 97.2 5.7E-05 1.9E-09 96.7 -0.0 47 1030-1078 502-548 (806)
395 2p67_A LAO/AO transport system 97.2 6.5E-05 2.2E-09 86.4 0.2 52 1027-1078 44-95 (341)
396 1ega_A Protein (GTP-binding pr 97.2 0.00027 9.2E-09 79.8 5.3 139 1037-1197 6-163 (301)
397 2qby_A CDC6 homolog 1, cell di 97.1 0.00018 6.1E-09 83.8 3.9 30 1037-1066 43-72 (386)
398 3bh0_A DNAB-like replicative h 97.1 0.00025 8.6E-09 80.5 4.8 107 400-553 55-163 (315)
399 1mky_A Probable GTP-binding pr 97.1 0.00028 9.6E-09 84.1 5.3 69 415-483 182-263 (439)
400 1ega_A Protein (GTP-binding pr 97.1 0.00026 9E-09 79.8 4.2 142 412-586 7-163 (301)
401 2qor_A Guanylate kinase; phosp 97.1 0.00012 3.9E-09 77.7 1.2 53 1035-1087 8-71 (204)
402 2p67_A LAO/AO transport system 97.1 8.7E-05 3E-09 85.4 0.0 50 401-450 44-93 (341)
403 3llm_A ATP-dependent RNA helic 97.0 0.00067 2.3E-08 73.5 6.8 137 409-577 72-214 (235)
404 1lv7_A FTSH; alpha/beta domain 97.0 0.0021 7.1E-08 70.5 10.7 44 402-449 36-79 (257)
405 1m2o_B GTP-binding protein SAR 97.0 0.00031 1.1E-08 73.3 3.7 49 1028-1077 13-69 (190)
406 1m7g_A Adenylylsulfate kinase; 97.0 0.00012 4E-09 78.1 0.4 44 1034-1077 20-65 (211)
407 4eaq_A DTMP kinase, thymidylat 97.0 0.00024 8.1E-09 76.8 2.8 47 1029-1076 13-62 (229)
408 1f6b_A SAR1; gtpases, N-termin 97.0 0.00019 6.4E-09 75.6 2.0 42 391-435 6-47 (198)
409 2www_A Methylmalonic aciduria 97.0 0.00018 6.3E-09 82.8 2.0 43 1037-1079 72-114 (349)
410 1j8m_F SRP54, signal recogniti 97.0 0.0016 5.3E-08 73.2 9.5 49 1030-1079 89-138 (297)
411 1u94_A RECA protein, recombina 97.0 0.0021 7E-08 74.0 10.7 149 1028-1214 50-238 (356)
412 4eaq_A DTMP kinase, thymidylat 97.0 0.00021 7.4E-09 77.1 2.3 43 403-446 13-58 (229)
413 1kag_A SKI, shikimate kinase I 97.0 0.00028 9.4E-09 72.4 2.9 33 1038-1074 3-35 (173)
414 2qby_A CDC6 homolog 1, cell di 97.0 0.00033 1.1E-08 81.5 3.9 31 411-441 43-73 (386)
415 1m7g_A Adenylylsulfate kinase; 97.0 0.00012 4.1E-09 78.0 0.1 43 408-450 20-64 (211)
416 1kag_A SKI, shikimate kinase I 96.9 0.00032 1.1E-08 71.8 3.1 33 412-448 3-35 (173)
417 1u94_A RECA protein, recombina 96.9 0.0034 1.2E-07 72.2 11.9 36 401-437 49-87 (356)
418 3bh0_A DNAB-like replicative h 96.9 0.0012 4E-08 75.0 7.7 35 1027-1061 56-90 (315)
419 2gj8_A MNME, tRNA modification 96.9 0.00043 1.5E-08 71.0 3.8 27 1037-1063 2-28 (172)
420 4fcw_A Chaperone protein CLPB; 96.9 0.001 3.6E-08 75.0 6.7 31 1040-1070 48-78 (311)
421 2www_A Methylmalonic aciduria 96.8 0.00028 9.5E-09 81.3 1.8 41 411-451 72-112 (349)
422 3r20_A Cytidylate kinase; stru 96.8 7.9E-05 2.7E-09 80.3 -2.7 69 1039-1107 9-95 (233)
423 2q6t_A DNAB replication FORK h 96.8 0.0025 8.5E-08 76.0 9.9 168 1027-1206 188-396 (444)
424 2qor_A Guanylate kinase; phosp 96.8 0.00022 7.4E-09 75.6 0.4 30 409-438 8-37 (204)
425 2w58_A DNAI, primosome compone 96.8 0.00079 2.7E-08 70.9 4.7 27 1040-1066 55-81 (202)
426 3cf0_A Transitional endoplasmi 96.8 0.0026 8.8E-08 71.7 9.0 39 1033-1073 43-81 (301)
427 1l8q_A Chromosomal replication 96.8 0.0014 4.7E-08 74.7 6.6 29 412-440 36-64 (324)
428 3r20_A Cytidylate kinase; stru 96.8 8.1E-05 2.8E-09 80.2 -3.4 70 413-482 9-96 (233)
429 1f2t_A RAD50 ABC-ATPase; DNA d 96.7 0.00085 2.9E-08 67.2 4.1 30 404-434 15-44 (149)
430 4dcu_A GTP-binding protein ENG 96.7 0.0019 6.4E-08 77.3 7.5 58 1137-1196 87-144 (456)
431 3bos_A Putative DNA replicatio 96.7 0.0012 4E-08 71.2 5.3 28 1038-1065 51-78 (242)
432 1m2o_B GTP-binding protein SAR 96.7 0.00097 3.3E-08 69.5 4.4 34 401-435 12-45 (190)
433 2w58_A DNAI, primosome compone 96.7 0.0016 5.3E-08 68.6 5.9 27 414-440 55-81 (202)
434 3h4m_A Proteasome-activating n 96.7 0.0034 1.1E-07 69.9 9.0 28 1036-1063 48-75 (285)
435 3cf0_A Transitional endoplasmi 96.7 0.0027 9.4E-08 71.4 8.2 30 408-437 44-73 (301)
436 3bos_A Putative DNA replicatio 96.6 0.0009 3.1E-08 72.1 3.4 28 412-439 51-78 (242)
437 2gj8_A MNME, tRNA modification 96.6 0.0014 4.7E-08 67.2 4.3 27 411-437 2-28 (172)
438 4fcw_A Chaperone protein CLPB; 96.6 0.0045 1.6E-07 69.7 9.1 32 413-444 47-78 (311)
439 1njg_A DNA polymerase III subu 96.5 0.0013 4.6E-08 70.5 4.2 45 1151-1196 125-169 (250)
440 3h4m_A Proteasome-activating n 96.5 0.0046 1.6E-07 68.8 8.3 28 410-437 48-75 (285)
441 2jaq_A Deoxyguanosine kinase; 96.4 0.0002 6.9E-09 75.4 -3.0 22 1041-1062 2-23 (205)
442 1y63_A LMAJ004144AAA protein; 96.4 0.0013 4.3E-08 68.3 3.2 32 1031-1062 2-33 (184)
443 1sxj_D Activator 1 41 kDa subu 96.4 0.00051 1.7E-08 79.1 0.1 43 1152-1195 133-175 (353)
444 3n70_A Transport activator; si 96.4 0.0078 2.7E-07 59.7 8.8 32 1037-1068 22-53 (145)
445 1sxj_D Activator 1 41 kDa subu 96.4 0.00063 2.2E-08 78.3 0.8 43 541-584 133-175 (353)
446 1j8m_F SRP54, signal recogniti 96.4 0.00055 1.9E-08 76.9 0.1 48 404-452 89-137 (297)
447 1f2t_A RAD50 ABC-ATPase; DNA d 96.4 0.0019 6.4E-08 64.7 4.0 34 1030-1064 15-49 (149)
448 1y63_A LMAJ004144AAA protein; 96.4 0.0015 5.1E-08 67.8 3.4 32 405-436 2-33 (184)
449 2yvu_A Probable adenylyl-sulfa 96.4 0.00059 2E-08 70.9 0.3 43 1034-1076 8-51 (186)
450 1l8q_A Chromosomal replication 96.4 0.0031 1.1E-07 71.7 6.3 28 1038-1065 36-63 (324)
451 2ohf_A Protein OLA1, GTP-bindi 96.4 0.0016 5.5E-08 75.5 3.8 41 1035-1075 18-69 (396)
452 3lxw_A GTPase IMAP family memb 96.3 0.0042 1.4E-07 67.8 6.7 58 1137-1195 87-151 (247)
453 2qag_A Septin-2, protein NEDD5 96.3 0.00046 1.6E-08 79.9 -1.3 56 1007-1071 14-69 (361)
454 2wji_A Ferrous iron transport 96.3 0.0025 8.6E-08 64.5 4.4 24 1040-1063 4-27 (165)
455 3n70_A Transport activator; si 96.2 0.011 3.9E-07 58.4 8.9 32 411-442 22-53 (145)
456 2p5t_B PEZT; postsegregational 96.2 0.0015 5.2E-08 71.6 2.4 43 1035-1079 28-70 (253)
457 2yvu_A Probable adenylyl-sulfa 96.2 0.0016 5.6E-08 67.5 2.5 39 409-447 9-48 (186)
458 3dm5_A SRP54, signal recogniti 96.2 0.023 7.8E-07 66.8 12.1 35 1038-1072 99-133 (443)
459 1njg_A DNA polymerase III subu 96.2 0.0018 6.1E-08 69.5 2.6 45 540-585 125-169 (250)
460 1np6_A Molybdopterin-guanine d 96.2 0.0022 7.5E-08 65.9 3.1 37 1040-1076 7-46 (174)
461 2wjg_A FEOB, ferrous iron tran 96.1 0.0022 7.6E-08 66.2 3.0 38 1040-1077 8-56 (188)
462 2qag_A Septin-2, protein NEDD5 96.1 0.00054 1.8E-08 79.3 -1.9 58 382-448 15-72 (361)
463 2ohf_A Protein OLA1, GTP-bindi 96.1 0.0027 9.2E-08 73.6 3.7 40 409-448 18-68 (396)
464 2chg_A Replication factor C sm 96.1 0.02 6.7E-07 60.4 10.3 44 1151-1195 101-144 (226)
465 2v1u_A Cell division control p 96.1 0.0038 1.3E-07 72.5 4.9 28 1037-1064 42-69 (387)
466 2p5t_B PEZT; postsegregational 96.0 0.0018 6.1E-08 71.0 1.9 42 409-452 28-69 (253)
467 3t61_A Gluconokinase; PSI-biol 96.0 0.0019 6.4E-08 68.0 1.8 35 1039-1077 18-52 (202)
468 2wji_A Ferrous iron transport 96.0 0.0052 1.8E-07 62.1 5.1 23 415-437 5-27 (165)
469 3uk6_A RUVB-like 2; hexameric 96.0 0.014 4.9E-07 67.3 9.1 41 1036-1076 67-107 (368)
470 1np6_A Molybdopterin-guanine d 95.9 0.0029 1E-07 64.9 2.8 37 413-449 6-45 (174)
471 3d8b_A Fidgetin-like protein 1 95.9 0.016 5.5E-07 66.8 9.4 27 1037-1063 115-141 (357)
472 3qks_A DNA double-strand break 95.9 0.0042 1.4E-07 65.6 4.1 30 404-434 15-44 (203)
473 3t61_A Gluconokinase; PSI-biol 95.9 0.002 6.8E-08 67.9 1.4 32 413-448 18-49 (202)
474 1ex7_A Guanylate kinase; subst 95.9 0.0033 1.1E-07 65.2 2.8 45 1042-1088 4-61 (186)
475 2wjg_A FEOB, ferrous iron tran 95.8 0.0044 1.5E-07 63.9 3.7 22 415-436 9-30 (188)
476 4dcu_A GTP-binding protein ENG 95.8 0.01 3.4E-07 71.0 7.2 55 526-583 87-142 (456)
477 2q6t_A DNAB replication FORK h 95.8 0.012 3.9E-07 70.2 7.4 37 401-437 188-224 (444)
478 2qz4_A Paraplegin; AAA+, SPG7, 95.7 0.04 1.4E-06 60.0 11.2 27 1037-1063 37-63 (262)
479 2b8t_A Thymidine kinase; deoxy 95.7 0.011 3.7E-07 63.1 6.0 51 1152-1206 89-150 (223)
480 3dm5_A SRP54, signal recogniti 95.7 0.048 1.6E-06 64.0 11.9 29 412-440 99-127 (443)
481 2zej_A Dardarin, leucine-rich 95.7 0.0052 1.8E-07 63.4 3.4 26 1041-1066 4-29 (184)
482 2ga8_A Hypothetical 39.9 kDa p 95.6 0.0022 7.4E-08 72.9 0.4 37 401-437 10-48 (359)
483 1xp8_A RECA protein, recombina 95.6 0.026 8.9E-07 65.0 9.4 138 1035-1209 70-244 (366)
484 3ihw_A Centg3; RAS, centaurin, 95.6 0.009 3.1E-07 61.7 5.0 36 1041-1076 22-66 (184)
485 2i1q_A DNA repair and recombin 95.6 0.016 5.3E-07 65.9 7.3 34 402-435 86-120 (322)
486 2if2_A Dephospho-COA kinase; a 95.6 0.0054 1.8E-07 64.5 3.1 21 415-435 3-23 (204)
487 2i1q_A DNA repair and recombin 95.5 0.024 8.1E-07 64.3 8.6 27 1035-1061 94-120 (322)
488 3d8b_A Fidgetin-like protein 1 95.5 0.033 1.1E-06 64.2 9.8 27 411-437 115-141 (357)
489 2if2_A Dephospho-COA kinase; a 95.5 0.0063 2.1E-07 64.0 3.4 21 1041-1061 3-23 (204)
490 2ga8_A Hypothetical 39.9 kDa p 95.5 0.0024 8.2E-08 72.5 0.0 37 1027-1063 10-48 (359)
491 2zej_A Dardarin, leucine-rich 95.5 0.0065 2.2E-07 62.7 3.3 26 415-440 4-29 (184)
492 2qz4_A Paraplegin; AAA+, SPG7, 95.5 0.044 1.5E-06 59.7 10.2 26 412-437 38-63 (262)
493 3uk6_A RUVB-like 2; hexameric 95.4 0.015 5.3E-07 67.1 6.7 38 411-448 68-105 (368)
494 1ko7_A HPR kinase/phosphatase; 95.4 0.0084 2.9E-07 67.1 4.2 33 1028-1061 134-166 (314)
495 1jal_A YCHF protein; nucleotid 95.4 0.0097 3.3E-07 68.2 4.8 36 1039-1074 2-48 (363)
496 3t15_A Ribulose bisphosphate c 95.4 0.026 9E-07 63.0 8.4 24 1040-1063 37-60 (293)
497 1xp8_A RECA protein, recombina 95.4 0.035 1.2E-06 64.0 9.5 28 409-436 70-97 (366)
498 2vhj_A Ntpase P4, P4; non- hyd 95.4 0.014 4.8E-07 65.3 5.9 28 1034-1061 118-145 (331)
499 3syl_A Protein CBBX; photosynt 95.4 0.075 2.6E-06 59.5 12.2 26 1038-1063 66-91 (309)
500 3cm0_A Adenylate kinase; ATP-b 95.4 0.0069 2.4E-07 62.5 3.1 27 411-437 2-28 (186)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=4.3e-197 Score=1958.80 Aligned_cols=1190 Identities=36% Similarity=0.630 Sum_probs=1051.3
Q ss_pred cccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-----------------chhHHHhhHH
Q 040099 42 NGRIPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNA-----------------TKTLAIHGVL 104 (1236)
Q Consensus 42 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-----------------~~~~~~~~~~ 104 (1236)
..+++++++|+|+.++++++++++++++++.++..|++++++|+++|.+.... ....+...+.
T Consensus 57 ~~~v~~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (1321)
T 4f4c_A 57 VNKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVM 136 (1321)
T ss_dssp SSCCCHHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHH
T ss_pred cCCCCHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHHHH
Confidence 35678999999999999999999999999999999999999999998763210 1112334455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHH
Q 040099 105 KVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVG 184 (1236)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~ 184 (1236)
.+++++++++++.+++.|++.+++.++++++..++|.++|+|++++|++|||++ ++|++++|+++|++.+++++++.+.
T Consensus 137 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~-~~G~l~sr~~~D~~~i~~~~~~~l~ 215 (1321)
T 4f4c_A 137 NVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTN-HSGTLATKLFDNLERVKEGTGDKIG 215 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHT-CCTTHHHHHHHHHHHHHHTSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC-ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778888889999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHH
Q 040099 185 KFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQ 264 (1236)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 264 (1236)
.++..+++++++++++|+++|++++++++++|+++++..++.++.++..++.++..+++++.++|.++|+++||+|++|+
T Consensus 216 ~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 295 (1321)
T 4f4c_A 216 MAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLR 295 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHH
Q 040099 265 QASSIYNKCLVKSYKSSVQEGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPC 344 (1236)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~ 344 (1236)
.+.++|.+..++..+...+.....++..++..++..+++++++|+|++++.+|.+|+|++++++.++.....|+..+++.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~ 375 (1321)
T 4f4c_A 296 YELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQ 375 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCC
Q 040099 345 LSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGS 424 (1236)
Q Consensus 345 ~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGs 424 (1236)
+..++++.+|++|++++++.+|+.+.....+..+.+.+|+|+|+||+|+||+++++++|+|+||+|++||++||||||||
T Consensus 376 ~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGs 455 (1321)
T 4f4c_A 376 LAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGC 455 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSS
T ss_pred HHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCC
Confidence 99999999999999999998887654432233344567899999999999977778999999999999999999999999
Q ss_pred cHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHH
Q 040099 425 GKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASH 504 (1236)
Q Consensus 425 GKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~ 504 (1236)
|||||+++|+|+|+|++|+|.+||+|+++++.+++|++||||+|+||||++||+|||+||+|+++++++++||+.|++++
T Consensus 456 GKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~ 535 (1321)
T 4f4c_A 456 GKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEK 535 (1321)
T ss_dssp CHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchh
Q 040099 505 FIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSL 584 (1236)
Q Consensus 505 ~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~ 584 (1236)
||++||+||||.|||+|.+||||||||||||||+++||+||||||||||||+++|+.++++|+++.+|||+|+||||+++
T Consensus 536 ~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~ 615 (1321)
T 4f4c_A 536 FIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLST 615 (1321)
T ss_dssp HHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTT
T ss_pred HHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCeEEEEECCEEEEEeCcccccccccchhhhhHHhhhhhhcccccccCCC----C-----CCCCCCCCC----C---
Q 040099 585 IRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQETCKESEKSAVNNS----D-----SDNQPFASP----K--- 648 (1236)
Q Consensus 585 ~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~----~--- 648 (1236)
+++||+|+||++|+|+|+|+|+||+++ +|.|+++++.|...+..+....... . ......... .
T Consensus 616 i~~aD~Iivl~~G~ive~Gth~eL~~~-~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1321)
T 4f4c_A 616 IRNADLIISCKNGQVVEVGDHRALMAQ-QGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIM 694 (1321)
T ss_dssp TTTCSEEEEEETTEEEEEECHHHHHTT-TCHHHHHHHHHHHHHHHHHHHCC-----------------------------
T ss_pred HHhCCEEEEeeCCeeeccCCHHHHHHh-hhHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchh
Confidence 999999999999999999999999998 8999999998864432211110000 0 000000000 0
Q ss_pred ----CCC--C--CC---CCcCCCC--------ccccccCCCCcchhHHHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHH
Q 040099 649 ----ITT--P--KQ---SETESDF--------PASEKAKMPPDVSLSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVM 709 (1236)
Q Consensus 649 ----~~~--~--~~---~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (1236)
... . .. .+.+... ....++.......+++++++.+++++.++++++++.+.+...|.++++
T Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~ 774 (1321)
T 4f4c_A 695 NRVRSSTIGSITNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVF 774 (1321)
T ss_dssp ---------------------CCCCCCHHHHHHHTTTTSCCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHH
T ss_pred hhhhccccccccCCcchhHHHhhccchhHHHHHHHHHHcCCcceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 00 0000000 000111223345677788888999999999999999999999999999
Q ss_pred HHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhH
Q 040099 710 LAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGA 789 (1236)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~ 789 (1236)
+..+++.+............+|.++|++++++..++.+++.+++.+.+.++..++|.++|++++++|++|||..++++|+
T Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~ 854 (1321)
T 4f4c_A 775 FTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGK 854 (1321)
T ss_dssp HHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHH
T ss_pred HHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHH
Confidence 99988877654444445567888999999999999999999999999999999999999999999999999987899999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 040099 790 IGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEA 869 (1236)
Q Consensus 790 l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1236)
++||+++|++.++..++..+..++..++.++++++++++.+|.+++++++++|++++..+++.+.......+..+...+.
T Consensus 855 i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1321)
T 4f4c_A 855 ISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADS 934 (1321)
T ss_dssp HHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHH
T ss_pred HHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888877766655555556667778
Q ss_pred HHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHH-
Q 040099 870 SQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFT- 948 (1236)
Q Consensus 870 ~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~- 948 (1236)
..++.|+++|+++||+|+.++++.++|.+..+...+...+.....++..++...+..+..++++++|..++..+..+.+
T Consensus 935 ~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~ 1014 (1321)
T 4f4c_A 935 GKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQP 1014 (1321)
T ss_dssp HHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCH
T ss_pred HHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccch
Confidence 8899999999999999999999999999999999999999888999989998889999999999999999988876654
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCccCCccccEEEeEEEEECCCCCCcc
Q 040099 949 -EVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIE 1027 (1236)
Q Consensus 949 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~ 1027 (1236)
.++.++.++.+...++..+...+.++.++..+++|++++++.+++.+..... .+.++..|+|+|+||+|+||++++.+
T Consensus 1015 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~-~~~~~~~g~I~f~nVsf~Y~~~~~~~ 1093 (1321)
T 4f4c_A 1015 MRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLA-GEKKKLYGKVIFKNVRFAYPERPEIE 1093 (1321)
T ss_dssp HHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCCC-SBCCCCCCCEEEEEEEECCTTSCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCccCC-CCCCCCCCeEEEEEEEEeCCCCCCCc
Confidence 4444455555556677788888999999999999999999987766543322 22345678999999999999888778
Q ss_pred cccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHH
Q 040099 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI 1107 (1236)
Q Consensus 1028 vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL 1107 (1236)
||+||||+|+|||+||||||||||||||+++|+|||+|++|+|+|||+||+++++++||++|++|||||+||+|||||||
T Consensus 1094 VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI 1173 (1321)
T 4f4c_A 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENI 1173 (1321)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHH
T ss_pred cccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred H-----------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH
Q 040099 1108 A-----------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESE 1170 (1236)
Q Consensus 1108 ~-----------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te 1170 (1236)
+ +.|++++||.+||+||||.|||+|.+|||||||||||||||+|||+|||||||||+||++||
T Consensus 1174 ~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE 1253 (1321)
T 4f4c_A 1174 IYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESE 1253 (1321)
T ss_dssp SSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHH
T ss_pred hccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHH
Confidence 2 67899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHHhhhccC
Q 040099 1171 RVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPHT 1235 (1236)
Q Consensus 1171 ~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~q~ 1235 (1236)
+.||++|++.+++||+|+|||||+|+++||||+|||+|+|+|+|+|+||+++ +|.|++||+.|.
T Consensus 1254 ~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~-~g~y~~L~~~Q~ 1317 (1321)
T 4f4c_A 1254 KVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSE-KGAYYKLTQKQM 1317 (1321)
T ss_dssp HHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHC-C-----------
T ss_pred HHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999997 899999999885
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=6.1e-174 Score=1731.06 Aligned_cols=1190 Identities=40% Similarity=0.691 Sum_probs=1048.0
Q ss_pred ccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc----------------hhHHHhhHHHH
Q 040099 43 GRIPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNAT----------------KTLAIHGVLKV 106 (1236)
Q Consensus 43 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~----------------~~~~~~~~~~~ 106 (1236)
.+..++++++|..++++.+++++++++++.+++.|+++++++.++|.+....+ .......+..+
T Consensus 31 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (1284)
T 3g5u_A 31 PAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTY 110 (1284)
T ss_dssp --CTTHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHH
Confidence 34578899999988777788889999999999999999999999997642110 00111234455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHH
Q 040099 107 SKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKF 186 (1236)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~ 186 (1236)
++++++++++.+++.+++.+++.+.++++..++|.++|+|++++|++||+++ ++|++++|+++|++.+++.+...+..+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~-~~G~l~sr~~~D~~~i~~~~~~~~~~~ 189 (1284)
T 3g5u_A 111 AYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVH-DVGELNTRLTDDVSKINEGIGDKIGMF 189 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSC-CSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677778888889999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHH
Q 040099 187 IQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQA 266 (1236)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 266 (1236)
+..+++++++++++++++|++++++++++|+++++..++.++.++..++.++..+++++.+.|+++|+++||+|++|+.+
T Consensus 190 ~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~ 269 (1284)
T 3g5u_A 190 FQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKE 269 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 267 SSIYNKCLVKSYKSSVQEGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLS 346 (1236)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~ 346 (1236)
.++|.+..++..+...+.....+...++..++.++.+++++|+|++++..|.+++|.++++++++.....|+.++.+.+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 349 (1284)
T 3g5u_A 270 LERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIE 349 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888888889999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcH
Q 040099 347 AFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGK 426 (1236)
Q Consensus 347 ~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGK 426 (1236)
.++++.++++|++++++.+|+++.....+..++..+|.|+|+||+|+|+++++.++|+||||+|++||++||||||||||
T Consensus 350 ~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGK 429 (1284)
T 3g5u_A 350 AFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGK 429 (1284)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSH
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCH
Confidence 99999999999999999877654322122233345688999999999986555689999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHH
Q 040099 427 STVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFI 506 (1236)
Q Consensus 427 STl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i 506 (1236)
|||+++|+|+|+|++|+|.+||+|+++++.+++|++||||+|+|+||++||+|||.+|.++.++++++++++.+++++++
T Consensus 430 STl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i 509 (1284)
T 3g5u_A 430 STTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFI 509 (1284)
T ss_dssp HHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred HhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHh
Q 040099 507 KNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIR 586 (1236)
Q Consensus 507 ~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~ 586 (1236)
.++|+|+||.+||+|.+|||||||||+|||||+++|+|||||||||+||+++++.+++.++++.+|+|+|+||||+++++
T Consensus 510 ~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~ 589 (1284)
T 3g5u_A 510 MKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVR 589 (1284)
T ss_dssp HHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHT
T ss_pred HhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred hcCeEEEEECCEEEEEeCcccccccccchhhhhHHhhhhhhcccccccC---CCCCCCCCCC--CC-------CCCC-C-
Q 040099 587 NANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQETCKESEKSAVN---NSDSDNQPFA--SP-------KITT-P- 652 (1236)
Q Consensus 587 ~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~-------~~~~-~- 652 (1236)
.||+|+||++|+|+++|+|+|++++ ++.|.+++..|......+..... .......... .. .... .
T Consensus 590 ~~d~i~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (1284)
T 3g5u_A 590 NADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSI 668 (1284)
T ss_dssp TCSEEEECSSSCCCCEECHHHHHHT-TSHHHHHHHHTC------------------------------------------
T ss_pred cCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999988 79999998776543221100000 0000000000 00 0000 0
Q ss_pred -CCC-CcCCCCccccccCCCCcchhHHHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCch--hHHhhhH
Q 040099 653 -KQS-ETESDFPASEKAKMPPDVSLSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPK--EELMRHS 728 (1236)
Q Consensus 653 -~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 728 (1236)
... .......++..+.......+++++.+.+++++.++++++++++.+...|.+++++..+++.+.... .......
T Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 748 (1284)
T 3g5u_A 669 CGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNS 748 (1284)
T ss_dssp ---------------CCCCCSCCCTTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHH
T ss_pred ccccccccccchhhhhhccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHH
Confidence 000 000000001111122334566777777777888888888888899999999999988887664331 2233445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHH
Q 040099 729 KHWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDT 808 (1236)
Q Consensus 729 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~ 808 (1236)
..|..++++++++..++.+++.+++.+.+.++..++|.++|++++++|++|||.+++++|++++|+++|++.++..++..
T Consensus 749 ~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~ 828 (1284)
T 3g5u_A 749 NLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSR 828 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888889999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcc
Q 040099 809 LSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCA 888 (1236)
Q Consensus 809 l~~~~~~~~~~v~~~ii~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~ 888 (1236)
+..++..+..++.++++++.++|.+++++++++|+++++.++..+.......+..+........+.|+++|+++||+|+.
T Consensus 829 l~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~ 908 (1284)
T 3g5u_A 829 LAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTR 908 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999998888888887778888888888999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 040099 889 EEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTS 968 (1236)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 968 (1236)
++++.++|.+..+...+...+...+.+...++...+.++..++++|+|++++..+.++++.++.++.++.+...++..+.
T Consensus 909 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 988 (1284)
T 3g5u_A 909 EQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVS 988 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888888999999999999999999999999999999999999999998888888999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCCccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCC
Q 040099 969 SLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGES 1048 (1236)
Q Consensus 969 ~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~S 1048 (1236)
...+++.++..+++|+.++++.+++.+.....+..+++..|.|+|+||+|+||++++.++|+|+||+|+|||++||||||
T Consensus 989 ~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~s 1068 (1284)
T 3g5u_A 989 SFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSS 1068 (1284)
T ss_dssp SSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCC
Confidence 88889999999999999999987665432222223334568999999999998766567999999999999999999999
Q ss_pred CCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHH-----------------HHh
Q 040099 1049 GSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA-----------------EMA 1111 (1236)
Q Consensus 1049 GSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~-----------------~~a 1111 (1236)
|||||||+++|+|+|+|++|+|.+||+|+++++++++|++|+||||||.+|++||+|||. +.+
T Consensus 1069 GsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~ 1148 (1284)
T 3g5u_A 1069 GCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEA 1148 (1284)
T ss_dssp STTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999993 467
Q ss_pred hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEec
Q 040099 1112 NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAH 1191 (1236)
Q Consensus 1112 ~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaH 1191 (1236)
++++++.++|+||||.+||+|.+||||||||+||||||+++|+|||||||||+||+++++.|+++|++..+++|+|+|||
T Consensus 1149 ~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH 1228 (1284)
T 3g5u_A 1149 NIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAH 1228 (1284)
T ss_dssp TCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECS
T ss_pred CcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEec
Confidence 88899999999999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred CchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHHhhhccC
Q 040099 1192 RLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPHT 1235 (1236)
Q Consensus 1192 Rl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~q~ 1235 (1236)
|+++++.||||+||++|+|+|.|+|+||+++ +|.|++|++.|.
T Consensus 1229 ~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~g~y~~l~~~q~ 1271 (1284)
T 3g5u_A 1229 RLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ-KGIYFSMVSVQA 1271 (1284)
T ss_dssp CTTGGGSCSEEEEEETBEEEEEECHHHHHHS-CSHHHHHHHHHC
T ss_pred CHHHHHcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHHh
Confidence 9999999999999999999999999999996 899999998763
No 3
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5.1e-90 Score=855.95 Aligned_cols=572 Identities=26% Similarity=0.380 Sum_probs=522.0
Q ss_pred cchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 040099 44 RIPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFF 123 (1236)
Q Consensus 44 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (1236)
+..++++++|.+++++ .++++++++++.+++.+..|+++++++|.+....+. ..+..+.+++++++++..++.++
T Consensus 8 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 82 (587)
T 3qf4_A 8 GGGSKTLARYLKPYWI-FAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDF----SLVLKTGILMLIVALIGAVGGIG 82 (587)
T ss_dssp CCCCCCGGGGTGGGHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678889988865 456677777888888889999999999986433222 22334445555666677788889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 124 QVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFK 203 (1236)
Q Consensus 124 ~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (1236)
..++..+.++++..++|.++|+|++++|+.||+++ ++|++++|+++|++.+++++...+..++..++++++++++++++
T Consensus 83 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 161 (587)
T 3qf4_A 83 CTVFASYASQNFGADLRRDLFRKVLSFSISNVNRF-HTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSI 161 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Q 040099 204 GWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQ 283 (1236)
Q Consensus 204 ~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 283 (1236)
+|.+++++++++|+++++..++.++.++..++.++..+++++.+.|.++|+++||+|++|+.+.++|.+..++..+...+
T Consensus 162 ~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 241 (587)
T 3qf4_A 162 NVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIIS 241 (587)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040099 284 EGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAIN 363 (1236)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~ 363 (1236)
..+..+...++..++..+..++++|+|++++.+|.+++|.+++++.++.....|+..++..+..++++.+|++|++++++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~ 321 (587)
T 3qf4_A 242 AFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLN 321 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888888888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcE
Q 040099 364 RKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443 (1236)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~ 443 (1236)
.+|+.++.. .....++..+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+
T Consensus 322 ~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~ 399 (587)
T 3qf4_A 322 EKPAIEEAD-NALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGR 399 (587)
T ss_dssp CCCSCCCCT-TCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEE
T ss_pred CCCccCCCC-CccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcE
Confidence 877644322 112223346789999999999743 467999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCC
Q 040099 444 VLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQ 523 (1236)
Q Consensus 444 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~ 523 (1236)
|.+||+|+++++.+++|++|+||||+|++|++||+|||.+|.+..++++++++++.+++++++.++|+|++|.+|++|.+
T Consensus 400 i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~ 479 (587)
T 3qf4_A 400 VEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRN 479 (587)
T ss_dssp EEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCS
T ss_pred EEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCC
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEe
Q 040099 524 LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKG 603 (1236)
Q Consensus 524 LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g 603 (1236)
||||||||++|||||+++|+|||||||||+||+++++.+++.|+++.+++|+|+||||+++++.||+|++|++|+|+++|
T Consensus 480 LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g 559 (587)
T 3qf4_A 480 FSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFG 559 (587)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEE
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred CcccccccccchhhhhHHhhh
Q 040099 604 THSELLENPYGAYNRLIRLQE 624 (1236)
Q Consensus 604 ~~~~l~~~~~~~y~~~~~~~~ 624 (1236)
+|+|++++ ++.|++++..|.
T Consensus 560 ~~~el~~~-~~~~~~~~~~~~ 579 (587)
T 3qf4_A 560 THKELLEH-CKPYREIYESQF 579 (587)
T ss_dssp CHHHHHHH-CHHHHHHHHHHC
T ss_pred CHHHHHhC-CcHHHHHHHHHh
Confidence 99999987 789999998764
No 4
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.8e-89 Score=851.25 Aligned_cols=572 Identities=30% Similarity=0.418 Sum_probs=519.1
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc---hhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 040099 47 FHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNAT---KTLAIHGVLKVSKKFVYLALGAGVASFF 123 (1236)
Q Consensus 47 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (1236)
++++++|.+++++ .++++++++++.+++.+..|++++.++|.+....+ ..........++..++++.++..++.++
T Consensus 2 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (578)
T 4a82_A 2 IKRYLQFVKPYKY-RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFI 80 (578)
T ss_dssp HHHHHHHHGGGHH-HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899998865 45667777777888888899999999998654321 1111011123334445556667788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 124 QVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFK 203 (1236)
Q Consensus 124 ~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (1236)
+.++..+.+.++..++|.++|+|++++|++||+++ ++|++++|+++|++.+++++...+..++.+++++++++++++++
T Consensus 81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (578)
T 4a82_A 81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYANN-QVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTS-CHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 99999999999999999999988888999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Q 040099 204 GWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQ 283 (1236)
Q Consensus 204 ~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 283 (1236)
+|.+++++++++|+++++..++.++.++..++.++..+++++.+.|.++|+++||+|++|+.+.++|++..++..+...+
T Consensus 160 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 239 (578)
T 4a82_A 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (578)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040099 284 EGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAIN 363 (1236)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~ 363 (1236)
..+..+...++..++..++.++++++|++++.+|.+|+|.+++++.++.....|+.++...+..++++.+|++|++++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~ 319 (578)
T 4a82_A 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcE
Q 040099 364 RKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443 (1236)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~ 443 (1236)
.+++.++.. ...+.+...+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+++|++|+
T Consensus 320 ~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~ 397 (578)
T 4a82_A 320 EDYDIKNGV-GAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 397 (578)
T ss_dssp CCCSSCCCT-TCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEE
T ss_pred CCCcccCCC-CccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcE
Confidence 877654321 112223345789999999999742 457999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCC
Q 040099 444 VLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQ 523 (1236)
Q Consensus 444 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~ 523 (1236)
|.+||+|+++++.+++|++||||||+|++|++||+|||.+|.+..+++++.++++.+++++++.++|+|++|.+|++|.+
T Consensus 398 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~ 477 (578)
T 4a82_A 398 ILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK 477 (578)
T ss_dssp EEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTT
T ss_pred EEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCc
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEe
Q 040099 524 LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKG 603 (1236)
Q Consensus 524 LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g 603 (1236)
||||||||++|||||+++|+|||||||||+||+++++.+.+.++++.+++|+|+||||+++++.||+|++|++|+|+++|
T Consensus 478 LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 557 (578)
T 4a82_A 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETG 557 (578)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred CcccccccccchhhhhHHhh
Q 040099 604 THSELLENPYGAYNRLIRLQ 623 (1236)
Q Consensus 604 ~~~~l~~~~~~~y~~~~~~~ 623 (1236)
+|+|++++ ++.|+++++.|
T Consensus 558 ~~~el~~~-~~~~~~~~~~q 576 (578)
T 4a82_A 558 THRELIAK-QGAYEHLYSIQ 576 (578)
T ss_dssp CHHHHHHT-TSHHHHHHTTT
T ss_pred CHHHHHhC-CcHHHHHHHhh
Confidence 99999987 78999998765
No 5
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.1e-89 Score=920.72 Aligned_cols=564 Identities=35% Similarity=0.626 Sum_probs=520.9
Q ss_pred CCCCcchhHHHhhhcCC-chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc-------------------hhHHhhh
Q 040099 668 KMPPDVSLSRLAYLNSP-EVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEP-------------------KEELMRH 727 (1236)
Q Consensus 668 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~ 727 (1236)
+..+++++++++.|..+ ++..+++|++++++.|+..|+++++++.+++.+... .......
T Consensus 55 ~~~~~v~~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (1321)
T 4f4c_A 55 EVVNKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHD 134 (1321)
T ss_dssp CCSSCCCHHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHH
T ss_pred cccCCCCHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHH
Confidence 34456788888887654 456677889999999999999999998887764211 1122344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHH
Q 040099 728 SKHWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGD 807 (1236)
Q Consensus 728 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~ 807 (1236)
...+.+++++++++.+++.+++.+++.+.+++...++|.++|++++++|++|||+ +++|++++|+++|++.++..+..
T Consensus 135 ~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~--~~~G~l~sr~~~D~~~i~~~~~~ 212 (1321)
T 4f4c_A 135 VMNVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDT--NHSGTLATKLFDNLERVKEGTGD 212 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH--TCCTTHHHHHHHHHHHHHHTSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC--CChHHHHHHHHHHHHHHHHHHHH
Confidence 5567778888888899999999999999999999999999999999999999995 88999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Q 040099 808 TLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFC 887 (1236)
Q Consensus 808 ~l~~~~~~~~~~v~~~ii~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~ 887 (1236)
.+..++..+++++++++++++.+|.+++++++++|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|+
T Consensus 213 ~l~~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~ 292 (1321)
T 4f4c_A 213 KIGMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLN 292 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999899999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 040099 888 AEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQT 967 (1236)
Q Consensus 888 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~ 967 (1236)
+|+++.++|.+..++..+...+.....++..+...++.++..++++|+|++++..|.+++|.+++++.++.....++..+
T Consensus 293 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~ 372 (1321)
T 4f4c_A 293 GLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLA 372 (1321)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcC
Q 040099 968 SSLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGE 1047 (1236)
Q Consensus 968 ~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~ 1047 (1236)
...+..+.++..+++|++++++.+++.+.....+..+.+..|+|+|+||+|+||++++.++|+|+||+|+|||++|||||
T Consensus 373 ~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~ 452 (1321)
T 4f4c_A 373 GPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGS 452 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEec
Confidence 99999999999999999999998877655444444445567899999999999988888999999999999999999999
Q ss_pred CCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHH---------------HHhh
Q 040099 1048 SGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA---------------EMAN 1112 (1236)
Q Consensus 1048 SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~---------------~~a~ 1112 (1236)
||||||||+++|+|+|+|++|+|++||+|++++++++||++|+||||||+||+|||||||. +.|+
T Consensus 453 sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~ 532 (1321)
T 4f4c_A 453 SGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMAN 532 (1321)
T ss_dssp SSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999999999999999999995 6788
Q ss_pred hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecC
Q 040099 1113 ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHR 1192 (1236)
Q Consensus 1113 ~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHR 1192 (1236)
+++||+.||+|+||.|||+|.+||||||||||||||+++||+||||||||||||++||+.|+++|++..++||+|+||||
T Consensus 533 l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHr 612 (1321)
T 4f4c_A 533 AEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHR 612 (1321)
T ss_dssp CHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSC
T ss_pred chhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHHhhhcc
Q 040099 1193 LSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPH 1234 (1236)
Q Consensus 1193 l~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~q 1234 (1236)
++++++||+|+||++|+|+|+|||+||+++ +|.|++|++.|
T Consensus 613 ls~i~~aD~Iivl~~G~ive~Gth~eL~~~-~g~y~~l~~~q 653 (1321)
T 4f4c_A 613 LSTIRNADLIISCKNGQVVEVGDHRALMAQ-QGLYYDLVTAQ 653 (1321)
T ss_dssp TTTTTTCSEEEEEETTEEEEEECHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHhCCEEEEeeCCeeeccCCHHHHHHh-hhHHHHHHHhh
Confidence 999999999999999999999999999997 99999999866
No 6
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-89 Score=854.60 Aligned_cols=571 Identities=26% Similarity=0.423 Sum_probs=524.7
Q ss_pred cchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 040099 44 RIPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFF 123 (1236)
Q Consensus 44 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (1236)
+..++++++|++++++ .++++++++++.+++.+..|++++.++|.+....+. ..+..+++.++++.++..++.++
T Consensus 22 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 96 (598)
T 3qf4_B 22 TATLRRLLGYLRPHTF-TLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRF----DLLPRYMLILGTIYALTSLLFWL 96 (598)
T ss_dssp HHHHHHHGGGTGGGHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCG----GGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467889999998765 456677777888888899999999999986533221 22334455566667778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 124 QVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFK 203 (1236)
Q Consensus 124 ~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (1236)
+.++....+.++..++|.++|+|++++|++||+++ ++|++++|+++|++.+++++...+..++.+++++++++++++++
T Consensus 97 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 175 (598)
T 3qf4_B 97 QGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRT-PHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRV 175 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCTHHHHHS-CHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Q 040099 204 GWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQ 283 (1236)
Q Consensus 204 ~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 283 (1236)
+|.+++++++++|+++++..++.++.++..++.++..+++++.+.|.++|+++||+|++|+.+.++|++..++..+...+
T Consensus 176 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 255 (598)
T 3qf4_B 176 NVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTK 255 (598)
T ss_dssp CHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040099 284 EGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAIN 363 (1236)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~ 363 (1236)
..+..+...++..++..++.++++++|++++.+|.+++|.+++++.+......|+..+...+..++++.++++|++++++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~ 335 (598)
T 3qf4_B 256 AQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILD 335 (598)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999998888899999999999999999999999999999
Q ss_pred cCCCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcE
Q 040099 364 RKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443 (1236)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~ 443 (1236)
.+++.+... ..+.++..+.|+++||+|+|++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+
T Consensus 336 ~~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~ 411 (598)
T 3qf4_B 336 LEEEKDDPD--AVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQ 411 (598)
T ss_dssp SCCCCCCSS--CCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEE
T ss_pred CCCCCCCCC--CCCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeE
Confidence 877643221 1222344678999999999963 357999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCC
Q 040099 444 VLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQ 523 (1236)
Q Consensus 444 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~ 523 (1236)
|.+||+|+++++.+++|++||||||+|++|++||+|||.+|++..++++++++++.+++++++.++|+|++|.+|++|.+
T Consensus 412 i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~ 491 (598)
T 3qf4_B 412 ILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGED 491 (598)
T ss_dssp EEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTT
T ss_pred EEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCC
Confidence 99999999999999999999999999999999999999999988888999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEe
Q 040099 524 LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKG 603 (1236)
Q Consensus 524 LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g 603 (1236)
||||||||++|||||+++|+|||||||||+||+++++.+++.|+++.+|+|+|+||||+++++.||+|++|++|+|+++|
T Consensus 492 LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 571 (598)
T 3qf4_B 492 LSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMG 571 (598)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECS
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred CcccccccccchhhhhHHhhhh
Q 040099 604 THSELLENPYGAYNRLIRLQET 625 (1236)
Q Consensus 604 ~~~~l~~~~~~~y~~~~~~~~~ 625 (1236)
+|+|++++ ++.|++++..|..
T Consensus 572 ~~~~l~~~-~~~~~~~~~~~~~ 592 (598)
T 3qf4_B 572 KHDELIQK-RGFYYELFTSQYG 592 (598)
T ss_dssp CHHHHHHT-TCHHHHHHHHHHG
T ss_pred CHHHHHhC-CCHHHHHHHHHhh
Confidence 99999987 7999999987754
No 7
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=4.4e-87 Score=833.40 Aligned_cols=575 Identities=37% Similarity=0.553 Sum_probs=501.8
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 46 PFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQV 125 (1236)
Q Consensus 46 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (1236)
.+++++++.+++++. ++++++++++.+++.+..|++++.++|.+...... .....+..+...++++.++..++.+++.
T Consensus 6 ~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (595)
T 2yl4_A 6 EARKLLGLAYPERRR-LAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTV-DYSDNLTRLCLGLSAVFLCGAAANAIRV 83 (595)
T ss_dssp HHHHHHHHHGGGHHH-HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTS-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888887654 45566677777788888899999999976432110 0001122333344555566778888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 040099 126 ACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGW 205 (1236)
Q Consensus 126 ~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1236)
++..+.+.++..++|.++|+|++++|++||+++ ++|++++|+++|++.+++++...+..++..+++++++++++++++|
T Consensus 84 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 162 (595)
T 2yl4_A 84 YLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKT-RTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSP 162 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHS-CHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 206 LLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEG 285 (1236)
Q Consensus 206 ~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 285 (1236)
.+++++++++|+++++..++.++.++..++.++..+++++.+.|.++|+++||+|++|+.+.++|.+..++..+...+..
T Consensus 163 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 242 (595)
T 2yl4_A 163 NLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEA 242 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 040099 286 LATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINRK 365 (1236)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~ 365 (1236)
+..+...++..++..+..++++|+|++++.+|.+|+|++++++.+......|+..+...+..++++.++++|++++++.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~ 322 (595)
T 2yl4_A 243 FARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLERE 322 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99888888888888888889999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCccccccCCCCCCCCCCc-EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEE
Q 040099 366 PEIDLCCVNGKKLDDIRGD-IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444 (1236)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~-i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i 444 (1236)
++.++.. ...+++...++ |+++||+|+|++++++++|+|+||++++||++|||||||||||||+++|+|+++|++|+|
T Consensus 323 ~~~~~~~-~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i 401 (595)
T 2yl4_A 323 PKLPFNE-GVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI 401 (595)
T ss_dssp CSSCSSC-SBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEE
T ss_pred CccCCCC-CCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEE
Confidence 6543211 11111223567 999999999975433579999999999999999999999999999999999999999999
Q ss_pred EECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCC---CCHHHHHHHHHHhccHHHHHhCCCCccccccCCC
Q 040099 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTH---ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHG 521 (1236)
Q Consensus 445 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g 521 (1236)
.+||+|+++++.+++|++|+||+|+|++|++||+|||.+|.+. .++++++++++.+++++++.++|+|+||.+|++|
T Consensus 402 ~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~ 481 (595)
T 2yl4_A 402 SLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKG 481 (595)
T ss_dssp EETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSS
T ss_pred EECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCC
Confidence 9999999999999999999999999999999999999999765 6789999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEE
Q 040099 522 IQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVE 601 (1236)
Q Consensus 522 ~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~ 601 (1236)
.+||||||||++|||||+++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|++++
T Consensus 482 ~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~ 561 (595)
T 2yl4_A 482 VLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITE 561 (595)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEE
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred EeCcccccccccchhhhhHHhhh
Q 040099 602 KGTHSELLENPYGAYNRLIRLQE 624 (1236)
Q Consensus 602 ~g~~~~l~~~~~~~y~~~~~~~~ 624 (1236)
+|+|+|+++++++.|+++++.|.
T Consensus 562 ~g~~~~l~~~~~~~~~~~~~~q~ 584 (595)
T 2yl4_A 562 YGKHEELLSKPNGIYRKLMNKQS 584 (595)
T ss_dssp EECSCC------C----------
T ss_pred ECCHHHHHhCCChHHHHHHHHhh
Confidence 99999999855789999987664
No 8
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=7.7e-87 Score=829.07 Aligned_cols=568 Identities=31% Similarity=0.477 Sum_probs=515.7
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 46 PFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQV 125 (1236)
Q Consensus 46 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (1236)
.++++++|.+++++ .++++++++++.+++.+..|++++.++|.+....+. ..+...+..++++.++..++.++..
T Consensus 12 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (582)
T 3b5x_A 12 TFKRLWTYIRLYKA-GLVVSTIALVINAAADTYMISLLKPLLDEGFGNAES----NFLRILPFMILGLMFVRGLSGFASS 86 (582)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888887755 345666777778888888899999999986532111 1122223334555667788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 040099 126 ACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGW 205 (1236)
Q Consensus 126 ~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1236)
++..+.+.++..++|.++|+|++++|++||+++ ++|++++|+++|++.+++++...+..++..+++++++++++++++|
T Consensus 87 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 165 (582)
T 3b5x_A 87 YCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQE-STGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSW 165 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 206 LLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEG 285 (1236)
Q Consensus 206 ~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 285 (1236)
.+++++++++|+++++..++.++.++..++.++..+++++.+.|.++|+++||+|++|+.+.++|.+..++..+...+..
T Consensus 166 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 245 (582)
T 3b5x_A 166 QLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLV 245 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 040099 286 LATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINRK 365 (1236)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~ 365 (1236)
+..+...++..++..+..++++|+|++++.+|.+|+|++++++.++.....|+..+...+..++++.++++|++++++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~ 325 (582)
T 3b5x_A 246 SAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLE 325 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEE
Q 040099 366 PEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVL 445 (1236)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~ 445 (1236)
++.++. ..+.+...+.|+++||+|+|+++ ++++|+|+||++++||++|||||||||||||+++|+|+++|++|+|.
T Consensus 326 ~~~~~~---~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~ 401 (582)
T 3b5x_A 326 TERDNG---KYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSIC 401 (582)
T ss_pred CcCCCC---CCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEE
Confidence 654321 11122234679999999999742 25799999999999999999999999999999999999999999999
Q ss_pred ECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCC-CCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCC
Q 040099 446 IDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGK-THATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQL 524 (1236)
Q Consensus 446 ~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~L 524 (1236)
+||+|+++++.+++|++||||||+|++|++||+|||.+|. ++.++++++++++.++++++++++|+|+||.+|++|.+|
T Consensus 402 ~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~L 481 (582)
T 3b5x_A 402 LDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSL 481 (582)
T ss_pred ECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcC
Confidence 9999999999999999999999999999999999999997 677889999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeC
Q 040099 525 SGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGT 604 (1236)
Q Consensus 525 SgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~ 604 (1236)
|||||||++|||||+++|+|||||||||+||+++++.+.+.|+++.+|+|+|+||||+++++.||+|++|++|+++++|+
T Consensus 482 SgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~ 561 (582)
T 3b5x_A 482 SGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGR 561 (582)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred cccccccccchhhhhHHhhh
Q 040099 605 HSELLENPYGAYNRLIRLQE 624 (1236)
Q Consensus 605 ~~~l~~~~~~~y~~~~~~~~ 624 (1236)
|+|++++ ++.|+++++.|.
T Consensus 562 ~~~l~~~-~~~~~~~~~~q~ 580 (582)
T 3b5x_A 562 HADLLAQ-DGAYAQLHRIQF 580 (582)
T ss_pred HHHHHhC-CcHHHHHHHHhh
Confidence 9999987 789999998763
No 9
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=8.2e-87 Score=828.81 Aligned_cols=568 Identities=32% Similarity=0.493 Sum_probs=515.5
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 040099 45 IPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQ 124 (1236)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (1236)
..++++++|.+++++ .++++++++++.+++.+..|++++.++|.+....+. ..+...++.++++.++..++.++.
T Consensus 11 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 85 (582)
T 3b60_A 11 QTFRRLWPTIAPFKA-GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDR----SVLLWMPLVVIGLMILRGITSYIS 85 (582)
T ss_dssp HHHHHHHHHHGGGHH-HHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTH----HHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888755 445666777778888888899999999976432111 112222333455566778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040099 125 VACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKG 204 (1236)
Q Consensus 125 ~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1236)
.++..+.+.++..++|.++|+|++++|++||+++ ++|++++|+++|++.+++++...+..++..+++++++++++++++
T Consensus 86 ~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 164 (582)
T 3b60_A 86 SYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYS 164 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Q 040099 205 WLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQE 284 (1236)
Q Consensus 205 ~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 284 (1236)
|.+++++++++|+++++..++.++.++..++.++..+++++.+.|.++|+++||+|++|+.+.++|.+..++..+...+.
T Consensus 165 ~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 244 (582)
T 3b60_A 165 WQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKM 244 (582)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 040099 285 GLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINR 364 (1236)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~ 364 (1236)
.+..++..++..++..+..++++|+|++++.+|.+|+|++++++.++.....|+..+...+..++++.++++|+.++++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~ 324 (582)
T 3b60_A 245 VSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDS 324 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEE
Q 040099 365 KPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444 (1236)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i 444 (1236)
+++.++. ..+.++..+.|+++||+|+|+++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|
T Consensus 325 ~~~~~~~---~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i 400 (582)
T 3b60_A 325 EQEKDEG---KRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI 400 (582)
T ss_dssp CCSCCCC---CBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEE
T ss_pred CCCccCC---CCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeE
Confidence 7654321 11222235679999999999732 2579999999999999999999999999999999999999999999
Q ss_pred EECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCC-CCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCC
Q 040099 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGK-THATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQ 523 (1236)
Q Consensus 445 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~ 523 (1236)
.+||+|+++++.+++|++|+||||+|++|++||+|||.++. ++.++++++++++.++++++++++|+|+||.+|++|.+
T Consensus 401 ~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~ 480 (582)
T 3b60_A 401 LMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVL 480 (582)
T ss_dssp EETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCS
T ss_pred EECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCC
Confidence 99999999999999999999999999999999999999987 67788999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEe
Q 040099 524 LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKG 603 (1236)
Q Consensus 524 LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g 603 (1236)
||||||||++|||||+++|+|||||||||+||+++++.+.+.|+++.+|+|+|+||||+++++.||+|++|++|+++++|
T Consensus 481 LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g 560 (582)
T 3b60_A 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERG 560 (582)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEec
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred CcccccccccchhhhhHHhh
Q 040099 604 THSELLENPYGAYNRLIRLQ 623 (1236)
Q Consensus 604 ~~~~l~~~~~~~y~~~~~~~ 623 (1236)
+|+|++++ ++.|+++++.|
T Consensus 561 ~~~~l~~~-~~~~~~~~~~q 579 (582)
T 3b60_A 561 THSELLAQ-HGVYAQLHKMQ 579 (582)
T ss_dssp CHHHHHHH-TSSHHHHHHHT
T ss_pred CHHHHHHc-CCHHHHHHHHh
Confidence 99999987 78999998865
No 10
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.2e-82 Score=787.52 Aligned_cols=555 Identities=25% Similarity=0.355 Sum_probs=499.9
Q ss_pred chhHHHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 673 VSLSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYC 752 (1236)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 752 (1236)
..+++++.+.+++++.++++++++++.+++.+..+++++.+++....... ......+..+++++.++..++.+++.++
T Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (587)
T 3qf4_A 9 GGSKTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD--FSLVLKTGILMLIVALIGAVGGIGCTVF 86 (587)
T ss_dssp CCCCCGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778888888888888888888888999999999887543211 1223344555566667777888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 040099 753 FAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQ 832 (1236)
Q Consensus 753 ~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~ 832 (1236)
..+.+.++..++|.++|++++++|++||++ +++|++++|+++|++.++..+...+..++..++.+++++++++.++|.
T Consensus 87 ~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 164 (587)
T 3qf4_A 87 ASYASQNFGADLRRDLFRKVLSFSISNVNR--FHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVK 164 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHcc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999994 889999999999999999999999989999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHH
Q 040099 833 LALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGL 912 (1236)
Q Consensus 833 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~ 912 (1236)
+++++++.+|++++...++.++.++..++.++..++..+.+.|.++|+++||+|++++++.++|.+..++..+...+...
T Consensus 165 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 244 (587)
T 3qf4_A 165 LSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFS 244 (587)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888888888888888889999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 040099 913 MSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVS 992 (1236)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~ 992 (1236)
......++..++..+..++++|+|++++..|.+++|.++++..+......++..+...+..+.++..+++|+.++++.++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 324 (587)
T 3qf4_A 245 LIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKP 324 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888999999999999999999999999999999999999999999999999999999999998766
Q ss_pred ccCCCccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEE
Q 040099 993 KIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITL 1072 (1236)
Q Consensus 993 ~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~i 1072 (1236)
+.+.... ....++..|.|+++||+|+|++. +.++|+|+||+|++||++|||||||||||||+++|.|+|+|++|+|.+
T Consensus 325 ~~~~~~~-~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i 402 (587)
T 3qf4_A 325 AIEEADN-ALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEV 402 (587)
T ss_dssp SCCCCTT-CBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEE
T ss_pred ccCCCCC-ccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEE
Confidence 5432221 11223456789999999999754 357999999999999999999999999999999999999999999999
Q ss_pred CCeecccCChHHHhcceEEEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCCCh
Q 040099 1073 DGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLSG 1137 (1236)
Q Consensus 1073 dG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~LSG 1137 (1236)
||+|+++++.+++|++|+||||||.+|++||+|||. +.+++++++.++|+|+||.+|++|.+|||
T Consensus 403 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSg 482 (587)
T 3qf4_A 403 DELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSG 482 (587)
T ss_dssp SSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCH
T ss_pred CCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCH
Confidence 999999999999999999999999999999999994 55778899999999999999999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChh
Q 040099 1138 GQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHE 1217 (1236)
Q Consensus 1138 GQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~ 1217 (1236)
|||||+||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||+++++.||||+||++|+|+|.|+|+
T Consensus 483 GqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~ 562 (587)
T 3qf4_A 483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHK 562 (587)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhhccCcccHHhhhcc
Q 040099 1218 SLISTKNGIYTSLIEPH 1234 (1236)
Q Consensus 1218 eLl~~~~g~y~~L~~~q 1234 (1236)
||+++ ++.|+++++.|
T Consensus 563 el~~~-~~~~~~~~~~~ 578 (587)
T 3qf4_A 563 ELLEH-CKPYREIYESQ 578 (587)
T ss_dssp HHHHH-CHHHHHHHHHH
T ss_pred HHHhC-CcHHHHHHHHH
Confidence 99997 89999999766
No 11
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=9.4e-82 Score=784.32 Aligned_cols=553 Identities=28% Similarity=0.457 Sum_probs=502.5
Q ss_pred chhHHHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 673 VSLSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYC 752 (1236)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 752 (1236)
..+++++.+.+++++.++++++++++.+++.+..+++++.+++....... ......+..+++++.++..++.+++.+.
T Consensus 23 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (598)
T 3qf4_B 23 ATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRR--FDLLPRYMLILGTIYALTSLLFWLQGKI 100 (598)
T ss_dssp HHHHHHGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC--GGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888888888888888888899999999887643211 2233456666777777888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 040099 753 FAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQ 832 (1236)
Q Consensus 753 ~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~ 832 (1236)
....+.++..++|.++|++++++|++||++ +++|++++|+++|++.++..+...+..++..++.+++++++++.++|.
T Consensus 101 ~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 178 (598)
T 3qf4_B 101 MLTLSQDVVFRLRKELFEKLQRVPVGFFDR--TPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVI 178 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTHHHHH--SCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999995 889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHH
Q 040099 833 LALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGL 912 (1236)
Q Consensus 833 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~ 912 (1236)
+++++++++|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|++++++.++|.+..++..+...+...
T Consensus 179 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 258 (598)
T 3qf4_B 179 LSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQI 258 (598)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888888888888888889999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 040099 913 MSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVS 992 (1236)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~ 992 (1236)
...+...+..++..+..++++++|++++..|.+++|.+++++.+......++..+...+..+..+..+++|+.++++.++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 338 (598)
T 3qf4_B 259 FSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEE 338 (598)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888889999999999999999999999999988888899999999999999999999999999998766
Q ss_pred ccCCCccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEE
Q 040099 993 KIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITL 1072 (1236)
Q Consensus 993 ~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~i 1072 (1236)
+.+.+. ..+.++..|+|+++||+|+|++. .++|+|+||+|++||++|||||||||||||+++|.|+|+|++|+|.+
T Consensus 339 ~~~~~~--~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 414 (598)
T 3qf4_B 339 EKDDPD--AVELREVRGEIEFKNVWFSYDKK--KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILV 414 (598)
T ss_dssp CCCCSS--CCCCCSCCCCEEEEEEECCSSSS--SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEE
T ss_pred CCCCCC--CCCCCCCCCeEEEEEEEEECCCC--CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEE
Confidence 543211 11223456789999999999743 46999999999999999999999999999999999999999999999
Q ss_pred CCeecccCChHHHhcceEEEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCCCh
Q 040099 1073 DGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLSG 1137 (1236)
Q Consensus 1073 dG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~LSG 1137 (1236)
||+|+++++.+++|+++++|||||.+|++||+|||. +.++++++++.+|+|+||.+|++|.+|||
T Consensus 415 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSg 494 (598)
T 3qf4_B 415 DGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQ 494 (598)
T ss_dssp TTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCH
T ss_pred CCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCH
Confidence 999999999999999999999999999999999995 34677889999999999999999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChh
Q 040099 1138 GQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHE 1217 (1236)
Q Consensus 1138 GQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~ 1217 (1236)
|||||+||||||+++|+|||||||||+||+++++.+++.|++..+++|+|+||||+++++.||+|+||++|+|+|.|+|+
T Consensus 495 Gq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~ 574 (598)
T 3qf4_B 495 GQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHD 574 (598)
T ss_dssp HHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhhccCcccHHhhhcc
Q 040099 1218 SLISTKNGIYTSLIEPH 1234 (1236)
Q Consensus 1218 eLl~~~~g~y~~L~~~q 1234 (1236)
||+++ +|.|+++++.|
T Consensus 575 ~l~~~-~~~~~~~~~~~ 590 (598)
T 3qf4_B 575 ELIQK-RGFYYELFTSQ 590 (598)
T ss_dssp HHHHT-TCHHHHHHHHH
T ss_pred HHHhC-CCHHHHHHHHH
Confidence 99996 89999999765
No 12
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2e-81 Score=779.04 Aligned_cols=556 Identities=30% Similarity=0.428 Sum_probs=498.8
Q ss_pred hHHHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchh-HHhhhH----HHHHHHHHHHHHHHHHHHHHH
Q 040099 675 LSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKE-ELMRHS----KHWALMFVALGAASLLTSPLS 749 (1236)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~l~~~~~~~~~~~ 749 (1236)
+++++.+.+++++.++++++++++.++..+..+++++.+++....... ...... ..+...++++.++..++.+++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (578)
T 4a82_A 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (578)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788888888888888888888888888999998887643211 001111 233344455556677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 750 MYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKA 829 (1236)
Q Consensus 750 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~ 829 (1236)
.+...+.+.++..++|.++|++++++|++||+ ++++|++++|+++|++.++..+...+..++.+++.+++++++++.+
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (578)
T 4a82_A 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYA--NNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH--TSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 4889999999999999999999988888888889999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHH
Q 040099 830 CWQLALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIR 909 (1236)
Q Consensus 830 ~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~ 909 (1236)
+|.+++++++.+|++++...++.++.++..++..+..++..+.+.|.++|+++||+|++++++.++|.+..++..+...+
T Consensus 160 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 239 (578)
T 4a82_A 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (578)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888888888888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040099 910 QGLMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLID 989 (1236)
Q Consensus 910 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~ 989 (1236)
...+.....++...+..+..++++++|++++..|.+++|.++++..+......++..+...+..+.++..+++|+.++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~ 319 (578)
T 4a82_A 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888888888888888899999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccCCCccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcE
Q 040099 990 QVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGH 1069 (1236)
Q Consensus 990 ~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~ 1069 (1236)
.+++.+.... ..+.+...|.|+++||+|+|++. +.++|+|+||+|++||++|||||||||||||+++|.|+|+|++|+
T Consensus 320 ~~~~~~~~~~-~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~ 397 (578)
T 4a82_A 320 EDYDIKNGVG-AQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 397 (578)
T ss_dssp CCCSSCCCTT-CCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEE
T ss_pred CCCcccCCCC-ccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcE
Confidence 7665432211 11223346789999999999853 356999999999999999999999999999999999999999999
Q ss_pred EEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCC
Q 040099 1070 ITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQ 1134 (1236)
Q Consensus 1070 I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~ 1134 (1236)
|.+||+|+++++.+++|++++||||||.+|++||+|||. +.+++++++.++|+|+||.+|++|.+
T Consensus 398 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~ 477 (578)
T 4a82_A 398 ILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK 477 (578)
T ss_dssp EEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTT
T ss_pred EEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCc
Confidence 999999999999999999999999999999999999994 45778899999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEec
Q 040099 1135 LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKG 1214 (1236)
Q Consensus 1135 LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~G 1214 (1236)
||||||||+||||||+++|+|||||||||+||+++++.+++.|++..+++|+|+||||+++++.||+|+||++|+|+|.|
T Consensus 478 LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 557 (578)
T 4a82_A 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETG 557 (578)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhHHhhccCcccHHhhhccC
Q 040099 1215 SHESLISTKNGIYTSLIEPHT 1235 (1236)
Q Consensus 1215 t~~eLl~~~~g~y~~L~~~q~ 1235 (1236)
+|+||+++ ++.|+++++.|+
T Consensus 558 ~~~el~~~-~~~~~~~~~~q~ 577 (578)
T 4a82_A 558 THRELIAK-QGAYEHLYSIQN 577 (578)
T ss_dssp CHHHHHHT-TSHHHHHHTTTT
T ss_pred CHHHHHhC-CcHHHHHHHhhc
Confidence 99999996 899999998875
No 13
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.9e-81 Score=839.11 Aligned_cols=580 Identities=35% Similarity=0.603 Sum_probs=520.5
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 040099 45 IPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQ 124 (1236)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (1236)
..+++++++.+++++ .++++++++++.+++.|..+++++.+++.+...............+..++++++++..++.+++
T Consensus 691 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~ 769 (1284)
T 3g5u_A 691 ASFWRILKLNSTEWP-YFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQ 769 (1284)
T ss_dssp CCTTHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888777644 4567777888888899999999999998764321111111223344556667777788888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhc--cCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 125 VACWMITGERQAARIRSFYLETILRQDIAFFDK--EINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFF 202 (1236)
Q Consensus 125 ~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~--~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1236)
.++..+.++++..++|.++|+|++++|++||++ + ++|++++|+++|++.+++.+...+..++..++.++++++++++
T Consensus 770 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~-~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~ 848 (1284)
T 3g5u_A 770 GFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKN-TTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLI 848 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999994 6 8999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q 040099 203 KGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSV 282 (1236)
Q Consensus 203 ~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 282 (1236)
++|++++++++++|+++++.++..++.++...+.++..+.....+.|+++|+++||+|++|+.+.++|.+..+...+...
T Consensus 849 ~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~ 928 (1284)
T 3g5u_A 849 YGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAM 928 (1284)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040099 283 QEGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAI 362 (1236)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l 362 (1236)
+.....+...++...+.++.+++++|+|++++..|.+++|.++.++.++.....|+..+......++++..+++|+++++
T Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l 1008 (1284)
T 3g5u_A 929 KKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRII 1008 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888888888888888888999999999999999
Q ss_pred ccCCCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 040099 363 NRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442 (1236)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G 442 (1236)
+.+|+.+.....+..++...+.|+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|.|+|+|++|
T Consensus 1009 ~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G 1088 (1284)
T 3g5u_A 1009 EKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAG 1088 (1284)
T ss_dssp HSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEE
T ss_pred cCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 98776543221222233446789999999999865445799999999999999999999999999999999999999999
Q ss_pred EEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCC--CCCHHHHHHHHHHhccHHHHHhCCCCccccccCC
Q 040099 443 EVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKT--HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEH 520 (1236)
Q Consensus 443 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~ 520 (1236)
+|.+||+|+++++.+++|++|+||||||.+|++||+|||.+|.+ ..++++++++++.+++++++.++|+||||.+||+
T Consensus 1089 ~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~ 1168 (1284)
T 3g5u_A 1089 SVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDK 1168 (1284)
T ss_dssp EEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTT
T ss_pred EEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCC
Confidence 99999999999999999999999999999999999999999875 3678999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEE
Q 040099 521 GIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIV 600 (1236)
Q Consensus 521 g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~ 600 (1236)
|.+|||||||||+|||||+++|+|||||||||+||+++++.|++.|++..+|+|+|+||||+++++.||||+||++|+|+
T Consensus 1169 G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~ 1248 (1284)
T 3g5u_A 1169 GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVK 1248 (1284)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEE
T ss_pred CCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred EEeCcccccccccchhhhhHHhhhhhh
Q 040099 601 EKGTHSELLENPYGAYNRLIRLQETCK 627 (1236)
Q Consensus 601 ~~g~~~~l~~~~~~~y~~~~~~~~~~~ 627 (1236)
+.|+|+|++++ +|.|+++++.|....
T Consensus 1249 ~~g~~~~l~~~-~g~y~~l~~~q~~~~ 1274 (1284)
T 3g5u_A 1249 EHGTHQQLLAQ-KGIYFSMVSVQAGAK 1274 (1284)
T ss_dssp EEECHHHHHHS-CSHHHHHHHHHC---
T ss_pred EECCHHHHHhC-CCHHHHHHHHHhhcc
Confidence 99999999998 799999999876443
No 14
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=2.6e-79 Score=761.37 Aligned_cols=551 Identities=31% Similarity=0.450 Sum_probs=492.4
Q ss_pred hHHHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 040099 675 LSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWA-LMFVALGAASLLTSPLSMYCF 753 (1236)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~ 753 (1236)
+++++.+.++.++.+.++++++++.+++.+..+++++.+++....... . ....+. ..++++.++..++.++..+..
T Consensus 13 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (582)
T 3b5x_A 13 FKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAE--S-NFLRILPFMILGLMFVRGLSGFASSYCL 89 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--h-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777777777777788888888888888888876542211 1 112222 235556667778888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 040099 754 AVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQL 833 (1236)
Q Consensus 754 ~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l 833 (1236)
.+.+.++..++|.++|++++++|++||+ ++++|++++|+++|++.++..+...+..++..++.++++++++++++|.+
T Consensus 90 ~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 167 (582)
T 3b5x_A 90 SWVSGNVVMQMRRRLFNHFMHMPVRFFD--QESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQL 167 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999999 47899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040099 834 ALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLM 913 (1236)
Q Consensus 834 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 913 (1236)
++++++++|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|+.++++.++|.+..++..+...+....
T Consensus 168 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 247 (582)
T 3b5x_A 168 SLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSA 247 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888888888888888889999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 040099 914 SGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSK 993 (1236)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~ 993 (1236)
..+...+..++..+..++++++|++++..|.+++|.++++..+......++..+...+..+.++..+++|+.++++.+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~ 327 (582)
T 3b5x_A 248 QSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETE 327 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 88888888888889999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred cCCCccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEEC
Q 040099 994 IDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLD 1073 (1236)
Q Consensus 994 ~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~id 1073 (1236)
.+.. ..+.++..+.|+++||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|.|+|+|++|+|.+|
T Consensus 328 ~~~~---~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~ 403 (582)
T 3b5x_A 328 RDNG---KYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLD 403 (582)
T ss_pred CCCC---CCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEEC
Confidence 3211 11112235789999999999753 2469999999999999999999999999999999999999999999999
Q ss_pred CeecccCChHHHhcceEEEcCCCCCChhhHHHHHH----------------HHhhhchHHHhhhhchhhhhcCCCCCCCh
Q 040099 1074 GVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA----------------EMANANGFISGLQEGYDTLVGERGVQLSG 1137 (1236)
Q Consensus 1074 G~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~----------------~~a~~~~~i~~lp~Gldt~vge~G~~LSG 1137 (1236)
|+|+++++.+++|++++||||||.+|++||+|||. +.++++++++++|+|+||.+|++|.+|||
T Consensus 404 g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSg 483 (582)
T 3b5x_A 404 GHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSG 483 (582)
T ss_pred CEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCH
Confidence 99999999999999999999999999999999994 34677889999999999999999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChh
Q 040099 1138 GQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHE 1217 (1236)
Q Consensus 1138 GQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~ 1217 (1236)
|||||+||||||+++|+|||||||||+||+++++.+++.|++..+++|+|+||||+++++.||+|+||++|+|+|.|+|+
T Consensus 484 Gq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 563 (582)
T 3b5x_A 484 GQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHA 563 (582)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhhccCcccHHhhhccC
Q 040099 1218 SLISTKNGIYTSLIEPHT 1235 (1236)
Q Consensus 1218 eLl~~~~g~y~~L~~~q~ 1235 (1236)
||+++ ++.|+++++.|.
T Consensus 564 ~l~~~-~~~~~~~~~~q~ 580 (582)
T 3b5x_A 564 DLLAQ-DGAYAQLHRIQF 580 (582)
T ss_pred HHHhC-CcHHHHHHHHhh
Confidence 99986 889999998773
No 15
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.4e-79 Score=765.85 Aligned_cols=558 Identities=37% Similarity=0.547 Sum_probs=478.6
Q ss_pred hHHHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchh-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 675 LSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKE-ELMRHSKHWALMFVALGAASLLTSPLSMYCF 753 (1236)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 753 (1236)
+++++.+.+++++.++++++++++.+++.+..+++++.+++....... ........+...++++.++..++.+++.+..
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (595)
T 2yl4_A 7 ARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLM 86 (595)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777777777777777777777777888887775431110 0001122334445555666677788888899
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 040099 754 AVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQL 833 (1236)
Q Consensus 754 ~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l 833 (1236)
.+.+.++..++|.++|++++++|++||++ +++|++++|+++|++.++..+...+..++..++.+++.++++++++|.+
T Consensus 87 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~~--~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 164 (595)
T 2yl4_A 87 QTSGQRIVNRLRTSLFSSILRQEVAFFDK--TRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNL 164 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHH--SCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999994 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040099 834 ALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLM 913 (1236)
Q Consensus 834 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 913 (1236)
++++++.+|+++++..+..+..++..++.++..++..+.+.|.++|+++||+|+.++++.++|.+..++..+...+....
T Consensus 165 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 244 (595)
T 2yl4_A 165 ATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFA 244 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888888888888889999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 040099 914 SGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSK 993 (1236)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~ 993 (1236)
..+..++..++..+..++++++|++++..|.+++|.++++..+......++..+...+..+.++..+++|+.++++.+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~ 324 (595)
T 2yl4_A 245 RAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPK 324 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 88888888888888888899999999999999999999999999999999999999999999999999999999987654
Q ss_pred cCCCccccCccCCcccc-EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEE
Q 040099 994 IDSSEYTGRTLENVMGE-VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITL 1072 (1236)
Q Consensus 994 ~~~~~~~~~~~~~~~g~-I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~i 1072 (1236)
.+.... ..++++..++ |+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|.|+|+|++|+|.+
T Consensus 325 ~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~ 403 (595)
T 2yl4_A 325 LPFNEG-VILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISL 403 (595)
T ss_dssp SCSSCS-BCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEE
T ss_pred cCCCCC-CCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEE
Confidence 332111 1111233577 99999999998653456999999999999999999999999999999999999999999999
Q ss_pred CCeecccCChHHHhcceEEEcCCCCCChhhHHHHHH------------------HHhhhchHHHhhhhchhhhhcCCCCC
Q 040099 1073 DGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA------------------EMANANGFISGLQEGYDTLVGERGVQ 1134 (1236)
Q Consensus 1073 dG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~------------------~~a~~~~~i~~lp~Gldt~vge~G~~ 1134 (1236)
||+|+++++.+++|++|++|||||.+|++||+|||. +.++++++++++|+|+||.+|++|.+
T Consensus 404 ~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~ 483 (595)
T 2yl4_A 404 DGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 483 (595)
T ss_dssp TTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCC
T ss_pred CCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCc
Confidence 999999999999999999999999999999999994 34567788999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEec
Q 040099 1135 LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKG 1214 (1236)
Q Consensus 1135 LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~G 1214 (1236)
||||||||+||||||+++|+|||||||||+||+++++.+++.|++..+++|+|+||||+++++.||+|+||++|+|+|.|
T Consensus 484 LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g 563 (595)
T 2yl4_A 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYG 563 (595)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhHHhhccCcccHHhhhccC
Q 040099 1215 SHESLISTKNGIYTSLIEPHT 1235 (1236)
Q Consensus 1215 t~~eLl~~~~g~y~~L~~~q~ 1235 (1236)
+|+||++++++.|+++++.|.
T Consensus 564 ~~~~l~~~~~~~~~~~~~~q~ 584 (595)
T 2yl4_A 564 KHEELLSKPNGIYRKLMNKQS 584 (595)
T ss_dssp CSCC------C----------
T ss_pred CHHHHHhCCChHHHHHHHHhh
Confidence 999999855899999998763
No 16
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2.8e-79 Score=761.12 Aligned_cols=552 Identities=32% Similarity=0.512 Sum_probs=493.6
Q ss_pred hhHHHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 040099 674 SLSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWA-LMFVALGAASLLTSPLSMYC 752 (1236)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~ 752 (1236)
.+++++.+.++.++.+.++++++++.+++.+..+++++.+++....... . ....+. ..++++.++..++.+++.+.
T Consensus 12 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (582)
T 3b60_A 12 TFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD--R-SVLLWMPLVVIGLMILRGITSYISSYC 88 (582)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT--H-HHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--h-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666677777777778888888888888888888888876543211 1 112222 33455666777888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 040099 753 FAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQ 832 (1236)
Q Consensus 753 ~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~ 832 (1236)
..+.+.++..++|.++|++++++|++||++ +++|++++|+++|++.++..+...+..++..++.+++.++++++++|.
T Consensus 89 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~--~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 166 (582)
T 3b60_A 89 ISWVSGKVVMTMRRRLFGHMMGMPVAFFDK--QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQ 166 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSTHHHH--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999994 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHH
Q 040099 833 LALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGL 912 (1236)
Q Consensus 833 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~ 912 (1236)
+++++++++|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|+.++++.++|.+..++..+...+...
T Consensus 167 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T 3b60_A 167 LSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVS 246 (582)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888888888888888999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 040099 913 MSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVS 992 (1236)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~ 992 (1236)
...+..++..++..+..++++++|++++..|.+++|.++++..+......++..+...+..+..+..+++|+.++++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 326 (582)
T 3b60_A 247 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 326 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888899999999999999999999999999999999999999999999999999999999998765
Q ss_pred ccCCCccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEE
Q 040099 993 KIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITL 1072 (1236)
Q Consensus 993 ~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~i 1072 (1236)
+.+.. ..+.++..+.|+++||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|.|+|+|++|+|.+
T Consensus 327 ~~~~~---~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~ 402 (582)
T 3b60_A 327 EKDEG---KRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILM 402 (582)
T ss_dssp SCCCC---CBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEE
T ss_pred CccCC---CCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEE
Confidence 43221 11122335789999999999743 246999999999999999999999999999999999999999999999
Q ss_pred CCeecccCChHHHhcceEEEcCCCCCChhhHHHHHH----------------HHhhhchHHHhhhhchhhhhcCCCCCCC
Q 040099 1073 DGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA----------------EMANANGFISGLQEGYDTLVGERGVQLS 1136 (1236)
Q Consensus 1073 dG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~----------------~~a~~~~~i~~lp~Gldt~vge~G~~LS 1136 (1236)
||+|+++++.+++|++++||||||.+|++||+|||. +.++++++++++|+|+||.+|++|.+||
T Consensus 403 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LS 482 (582)
T 3b60_A 403 DGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLS 482 (582)
T ss_dssp TTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSC
T ss_pred CCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCC
Confidence 999999999999999999999999999999999994 3457788999999999999999999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecCh
Q 040099 1137 GGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSH 1216 (1236)
Q Consensus 1137 GGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~ 1216 (1236)
||||||+||||||+++|+|||||||||+||+++++.+++.|++..+++|+|+||||+++++.||+|+||++|+|+|.|+|
T Consensus 483 gGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 562 (582)
T 3b60_A 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTH 562 (582)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhhccCcccHHhhhccC
Q 040099 1217 ESLISTKNGIYTSLIEPHT 1235 (1236)
Q Consensus 1217 ~eLl~~~~g~y~~L~~~q~ 1235 (1236)
+||+++ ++.|+++++.|.
T Consensus 563 ~~l~~~-~~~~~~~~~~q~ 580 (582)
T 3b60_A 563 SELLAQ-HGVYAQLHKMQF 580 (582)
T ss_dssp HHHHHH-TSSHHHHHHHTC
T ss_pred HHHHHc-CCHHHHHHHHhc
Confidence 999986 899999998774
No 17
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=6.2e-66 Score=636.16 Aligned_cols=438 Identities=22% Similarity=0.312 Sum_probs=320.9
Q ss_pred EeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEE---------EECCeecCCCCHHH
Q 040099 388 KDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV---------LIDGVNLKEFQLKW 458 (1236)
Q Consensus 388 ~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i---------~~~g~~~~~~~~~~ 458 (1236)
+|++++|++ ...+|+|+| ++++||++||+||||||||||+++|+|+++|++|++ .++|.++.+.....
T Consensus 95 ~~ls~~yg~--~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~ 171 (607)
T 3bk7_A 95 EDCVHRYGV--NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERL 171 (607)
T ss_dssp GSEEEECST--TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHH
T ss_pred CCeEEEECC--CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhh
Confidence 899999963 225899999 999999999999999999999999999999999996 45665543321111
Q ss_pred --HhcceEEEccCCC----CCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 040099 459 --IREKIGLVSQEPV----LLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRV 532 (1236)
Q Consensus 459 --~r~~i~~v~Q~~~----l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRi 532 (1236)
.+..+++++|+.. ++.+|++||+..... .+++.++++..++ +........+||||||||+
T Consensus 172 ~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~---~~~~~~~L~~lgL-----------~~~~~~~~~~LSGGekQRv 237 (607)
T 3bk7_A 172 KNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDE---VGKFEEVVKELEL-----------ENVLDRELHQLSGGELQRV 237 (607)
T ss_dssp HHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCC---SSCHHHHHHHTTC-----------TTGGGSBGGGCCHHHHHHH
T ss_pred hhhhcceEEeechhhhchhhccccHHHHhhhhHH---HHHHHHHHHHcCC-----------CchhCCChhhCCHHHHHHH
Confidence 2346889998743 345699999975321 2344555555544 3334444568999999999
Q ss_pred HHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc-CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccccc
Q 040099 533 AIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI-NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLE 610 (1236)
Q Consensus 533 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 610 (1236)
+|||||+.+|++||||||||+||+.+...+.+.|+++.+ |+|+|+|||+++.+.. ||+|++|+++.. ..|.. .
T Consensus 238 aIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~~~-~~g~~---~- 312 (607)
T 3bk7_A 238 AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPG-VYGIF---S- 312 (607)
T ss_dssp HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESCTT-TEEEE---C-
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCCcc-cccee---c-
Confidence 999999999999999999999999999999999998854 8899999999999865 999999975421 00100 0
Q ss_pred cccchhhhhHHhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCcCCCCccccccCCCCcchhHHHhhhcCCchHHHH
Q 040099 611 NPYGAYNRLIRLQETCKESEKSAVNNSDSDNQPFASPKITTPKQSETESDFPASEKAKMPPDVSLSRLAYLNSPEVPALL 690 (1236)
Q Consensus 611 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1236)
.+... ...
T Consensus 313 ~~~~~------------------------------------------------------------~~~------------ 320 (607)
T 3bk7_A 313 KPKGT------------------------------------------------------------RNG------------ 320 (607)
T ss_dssp CCEEH------------------------------------------------------------HHH------------
T ss_pred cchhH------------------------------------------------------------HHH------------
Confidence 00000 000
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 691 LGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFE 770 (1236)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 770 (1236)
+ .........
T Consensus 321 ---i----------------~~~~~~~~~--------------------------------------------------- 330 (607)
T 3bk7_A 321 ---I----------------NEFLQGYLK--------------------------------------------------- 330 (607)
T ss_dssp ---H----------------HHHHHTEET---------------------------------------------------
T ss_pred ---H----------------HHHHhhcch---------------------------------------------------
Confidence 0 000000000
Q ss_pred HHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 040099 771 KVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHI 850 (1236)
Q Consensus 771 ~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~lv~l~~~pl~~~~~~~ 850 (1236)
..... +.
T Consensus 331 ---~~~~~-~~--------------------------------------------------------------------- 337 (607)
T 3bk7_A 331 ---DENVR-FR--------------------------------------------------------------------- 337 (607)
T ss_dssp ---TTTEE-CC---------------------------------------------------------------------
T ss_pred ---hhhhh-cc---------------------------------------------------------------------
Confidence 00000 00
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 851 QMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYA 930 (1236)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1236)
T Consensus 338 -------------------------------------------------------------------------------- 337 (607)
T 3bk7_A 338 -------------------------------------------------------------------------------- 337 (607)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCccCCcccc
Q 040099 931 VTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGE 1010 (1236)
Q Consensus 931 ~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~ 1010 (1236)
..+........ .......-.
T Consensus 338 ----------------------------------------------------------~~~~~~~~~~~--~~~~~~~~~ 357 (607)
T 3bk7_A 338 ----------------------------------------------------------PYEIRFTKLSE--RVDVERETL 357 (607)
T ss_dssp ----------------------------------------------------------SSCCCCCCSTT--SCCCCCCEE
T ss_pred ----------------------------------------------------------ccccccccCCC--cccccCceE
Confidence 00000000000 000001124
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|.|+++|++|+|.+ +.+++
T Consensus 358 l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i~ 420 (607)
T 3bk7_A 358 VEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTVA 420 (607)
T ss_dssp EEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCEE
T ss_pred EEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEEE
Confidence 889999999963 2689999999999999999999999999999999999999999986 24699
Q ss_pred EEcCCCCC-ChhhHHHHHHHH-h-h------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecC
Q 040099 1091 VVSQEPVL-FSDTIRANIAEM-A-N------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEA 1161 (1236)
Q Consensus 1091 ~V~Qdp~L-F~gTIreNL~~~-a-~------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEa 1161 (1236)
|+||++.+ ++.|++||+... . . +.+.+..+ |++........+||||||||++|||||+++|+|||||||
T Consensus 421 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEP 498 (607)
T 3bk7_A 421 YKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPL--GIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEP 498 (607)
T ss_dssp EECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHH--TCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECT
T ss_pred EEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 99999865 567999998532 1 1 11222222 444444556678999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhh-cCEEEEEeC--CEEEEecChhHHhh
Q 040099 1162 TSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKN-AHLIAVVSQ--GMIVEKGSHESLIS 1221 (1236)
Q Consensus 1162 TSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-aD~I~Vl~~--G~Ive~Gt~~eLl~ 1221 (1236)
|++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |++++.|+|++++.
T Consensus 499 t~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 499 SAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 99999999999999999874 48899999999999975 999999996 88889999999876
No 18
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.7e-65 Score=626.84 Aligned_cols=196 Identities=27% Similarity=0.354 Sum_probs=164.6
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|.|+++|++|+|.+ +.+|
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceE
Confidence 4889999999953 2689999999999999999999999999999999999999999986 2469
Q ss_pred EEEcCCCCC-ChhhHHHHHHHH-h-hh--chHHHhhh--hchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCC
Q 040099 1090 GVVSQEPVL-FSDTIRANIAEM-A-NA--NGFISGLQ--EGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEAT 1162 (1236)
Q Consensus 1090 ~~V~Qdp~L-F~gTIreNL~~~-a-~~--~~~i~~lp--~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaT 1162 (1236)
+||||++.+ +..|+.||+... . .. .+.+..+- -|+.........+||||||||++|||||+++|++|||||||
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt 429 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPS 429 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 999999976 567999988532 1 10 11121111 14444455666789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhh-cCEEEEEeC--CEEEEecChhHHhhc
Q 040099 1163 SALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKN-AHLIAVVSQ--GMIVEKGSHESLIST 1222 (1236)
Q Consensus 1163 SaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-aD~I~Vl~~--G~Ive~Gt~~eLl~~ 1222 (1236)
++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |++++.|+|++++..
T Consensus 430 ~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~~ 494 (538)
T 1yqt_A 430 AYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMREG 494 (538)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHhh
Confidence 9999999999999999874 38899999999999975 999999996 788899999998763
No 19
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=3.5e-64 Score=636.98 Aligned_cols=197 Identities=26% Similarity=0.341 Sum_probs=161.4
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcc
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 462 (1236)
..+...|++++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+| |+| +|.+... +.+
T Consensus 434 ~~L~~~~ls~~yg---~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~ 496 (986)
T 2iw3_A 434 EDLCNCEFSLAYG---AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECR 496 (986)
T ss_dssp CEEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSC
T ss_pred ceeEEeeEEEEEC---CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------cee
Confidence 3688889999995 3469999999999999999999999999999999996 554 5544321 124
Q ss_pred eEEEccCC-CCC-chhHHHHHhcCCCCCCHHHHHHHHHHhccH-HHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 040099 463 IGLVSQEP-VLL-SSSIRDNIAYGKTHATKEEIQAAAEAANAS-HFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI 539 (1236)
Q Consensus 463 i~~v~Q~~-~l~-~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~-~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~ 539 (1236)
++|++|++ .++ ..|+.||+.+..... .+++.++++..++. ++..+ ...+||||||||++|||||+
T Consensus 497 ~~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~-----------~~~~LSGGqkQRvaLArAL~ 564 (986)
T 2iw3_A 497 TVYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAM-----------PISALSGGWKMKLALARAVL 564 (986)
T ss_dssp EEETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHS-----------BGGGCCHHHHHHHHHHHHHH
T ss_pred EEEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcC-----------CcccCCHHHHHHHHHHHHHh
Confidence 79999985 444 459999998621112 56677777777763 34333 23479999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEE-EEeCcccccc
Q 040099 540 KDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIV-EKGTHSELLE 610 (1236)
Q Consensus 540 ~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~-~~g~~~~l~~ 610 (1236)
.+|+||||||||++||+.+..++.+.|++ .|+|+|+|||+++.+.. ||+|++|++|+++ ..|++++++.
T Consensus 565 ~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 565 RNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp TTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 99999999999999999999999999988 68999999999999975 9999999999997 5788777653
No 20
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=2.3e-64 Score=637.83 Aligned_cols=202 Identities=24% Similarity=0.387 Sum_probs=136.2
Q ss_pred CccccceeEEecCCcEEEEEcCCCCcHHHHH---------------------HHHHcCCCCC-------CcEEEECCeec
Q 040099 400 EQILNGFCLLIPNGTIAALVGTSGSGKSTVI---------------------SLIQRFYDPQ-------AGEVLIDGVNL 451 (1236)
Q Consensus 400 ~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~---------------------~ll~~~~~~~-------~G~i~~~g~~~ 451 (1236)
..+|+||||+|++||++||+||||||||||+ +++.++..|+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4699999999999999999999999999998 8999999998 45556666544
Q ss_pred CCCCHHHHhcceEEEccCCCC--------------------CchhHHHHHhcCCCC-CCH--HH-----HHHHHHHhccH
Q 040099 452 KEFQLKWIREKIGLVSQEPVL--------------------LSSSIRDNIAYGKTH-ATK--EE-----IQAAAEAANAS 503 (1236)
Q Consensus 452 ~~~~~~~~r~~i~~v~Q~~~l--------------------~~~ti~~ni~~g~~~-~~~--~~-----~~~~~~~~~~~ 503 (1236)
.. ..++.+++|+|.+.+ ...|++||+.+.... ... .+ ..++.+..
T Consensus 111 ~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 183 (670)
T 3ux8_A 111 SR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL--- 183 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHH---
T ss_pred hc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH---
Confidence 32 224456666665433 234899999874211 111 11 11111111
Q ss_pred HHHHhCCCCcccc-ccCCCCCCChHHHHHHHHHHHhcCCCC--EEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEe
Q 040099 504 HFIKNLPQGLDTN-VGEHGIQLSGGQKQRVAIARAMIKDPR--ILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVS 579 (1236)
Q Consensus 504 ~~i~~l~~g~~t~-~g~~g~~LSgGqkqRiaiARal~~~p~--ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~it 579 (1236)
+.+..+ |++.. ......+||||||||++|||||+.+|+ +||||||||+||+.+..++.+.|+++. +|.|+|+||
T Consensus 184 ~~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 184 GFLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp HHHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 223333 44432 345567899999999999999999998 999999999999999999999999885 478999999
Q ss_pred cCchhHhhcCeEEEE------ECCEEEEEeCcccccc
Q 040099 580 HRLSLIRNANIIAVI------QQGKIVEKGTHSELLE 610 (1236)
Q Consensus 580 H~~~~~~~ad~i~vl------~~G~i~~~g~~~~l~~ 610 (1236)
|+++.+..||+|++| ++|++++.|+++++..
T Consensus 262 Hd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 262 HDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 298 (670)
T ss_dssp CCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred CCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhc
Confidence 999988889999999 8999999998887754
No 21
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=2.8e-63 Score=561.49 Aligned_cols=279 Identities=41% Similarity=0.638 Sum_probs=252.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCC
Q 040099 343 PCLSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTS 422 (1236)
Q Consensus 343 ~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~s 422 (1236)
+.+..++++.++++|++++++.+++..... ...+.+...+.|+++||+|+|++ ++++|+||||+|++||++||||||
T Consensus 13 ~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~s 89 (306)
T 3nh6_A 13 GLVPRGSHMFIDMENMFDLLKEETEVKDLP-GAGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPS 89 (306)
T ss_dssp ------CCTTCCHHHHHHHHHHHHSCCCCT-TCBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSS
T ss_pred ccchhHHHHHHHHHHHHHHHhCCccccccc-cccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCC
Confidence 345678889999999999998766543221 11222234578999999999973 357999999999999999999999
Q ss_pred CCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhcc
Q 040099 423 GSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANA 502 (1236)
Q Consensus 423 GsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~ 502 (1236)
|||||||+++|+|+|+|++|+|.+||+|+.+++..++|++||||+|+|++|++||+|||.+|.+..++++++++++.+++
T Consensus 90 GsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l 169 (306)
T 3nh6_A 90 GAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGI 169 (306)
T ss_dssp CHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTC
T ss_pred CchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred HHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCc
Q 040099 503 SHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRL 582 (1236)
Q Consensus 503 ~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~ 582 (1236)
++++..+|+||+|.+|++|.+|||||||||+|||||+++|+|||||||||+||+.++..|++.|+++.+++|+|+||||+
T Consensus 170 ~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l 249 (306)
T 3nh6_A 170 HDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRL 249 (306)
T ss_dssp HHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSH
T ss_pred HHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred hhHhhcCeEEEEECCEEEEEeCcccccccccchhhhhHHhhhh
Q 040099 583 SLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQET 625 (1236)
Q Consensus 583 ~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~~~~~~~~ 625 (1236)
+++..||+|++|++|+|+++|+|+++++. ++.|+++|..|..
T Consensus 250 ~~~~~aD~i~vl~~G~iv~~G~~~el~~~-~~~y~~l~~~q~~ 291 (306)
T 3nh6_A 250 STVVNADQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQQG 291 (306)
T ss_dssp HHHHTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHHHC
T ss_pred HHHHcCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHHHHh
Confidence 99999999999999999999999999987 7999999987753
No 22
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=9e-63 Score=600.60 Aligned_cols=196 Identities=22% Similarity=0.286 Sum_probs=162.1
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.++++|++.+|.+ ..|+++||+|++||++||+||||||||||+++|.|+++|++|+|.++| +.+
T Consensus 269 ~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i 332 (538)
T 3ozx_A 269 KMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QIL 332 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCE
T ss_pred eEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eee
Confidence 4789999999963 358888999999999999999999999999999999999999999875 358
Q ss_pred EEEcCCCCC-ChhhHHHHHHHHhhh-----chHHHhhh--hchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecC
Q 040099 1090 GVVSQEPVL-FSDTIRANIAEMANA-----NGFISGLQ--EGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEA 1161 (1236)
Q Consensus 1090 ~~V~Qdp~L-F~gTIreNL~~~a~~-----~~~i~~lp--~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEa 1161 (1236)
+++||++.. |..|+++|+...... ...+..+- -|++........+||||||||++|||||+++|+|||||||
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEP 412 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQP 412 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 999999864 578999998642110 01111111 1444445566778999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhh-cCEEEEEeC--CEEEEecChhHHhh
Q 040099 1162 TSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKN-AHLIAVVSQ--GMIVEKGSHESLIS 1221 (1236)
Q Consensus 1162 TSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-aD~I~Vl~~--G~Ive~Gt~~eLl~ 1221 (1236)
|++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||+||++ |++...++|.++..
T Consensus 413 T~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~~ 477 (538)
T 3ozx_A 413 SSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKT 477 (538)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHHH
Confidence 99999999999999999875 47899999999999976 999999986 56677778766543
No 23
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-62 Score=600.41 Aligned_cols=192 Identities=26% Similarity=0.410 Sum_probs=160.1
Q ss_pred eEEEEECCCCCCcccccceeEEecCC-----CEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcc
Q 040099 1014 LRVSFKYPTRPHIEVFRDLCLTIPPG-----KTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQ 1088 (1236)
Q Consensus 1014 ~~Vsf~Y~~~~~~~vL~~is~~I~~G-----e~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~ 1088 (1236)
++++|+|+.. ..+++|+||++++| |++||+||||||||||+++|.|+++|++|+. +. +..
T Consensus 350 ~~~~~~y~~~--~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN 414 (608)
T ss_dssp SSSCCEECCE--EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred cceeEEecCc--ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence 5678889753 34799999999999 8899999999999999999999999999962 21 346
Q ss_pred eEEEcCCCC-CChhhHHHHHHHHhh--------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 040099 1089 MGVVSQEPV-LFSDTIRANIAEMAN--------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLD 1159 (1236)
Q Consensus 1089 i~~V~Qdp~-LF~gTIreNL~~~a~--------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLD 1159 (1236)
++++||++. .|++|+++|+..... ..+.++.+ |+.........+||||||||++|||||+.+|+|||||
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l--~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLD 492 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPL--RIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLID 492 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHH--TSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 999999974 567899999853211 01112111 3444455667789999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhh-cCEEEEEeC--CEEEEecChhHHhhc
Q 040099 1160 EATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKN-AHLIAVVSQ--GMIVEKGSHESLIST 1222 (1236)
Q Consensus 1160 EaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-aD~I~Vl~~--G~Ive~Gt~~eLl~~ 1222 (1236)
|||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||+||++ |+++..|+|++++..
T Consensus 493 EPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 493 EPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999999999998864 48999999999999976 999999997 999999999999875
No 24
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=4.4e-61 Score=543.54 Aligned_cols=261 Identities=46% Similarity=0.722 Sum_probs=234.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCCccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCC
Q 040099 970 LASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESG 1049 (1236)
Q Consensus 970 ~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SG 1049 (1236)
++++++++..+++|++++++.+++...... ..+.+...|.|+|+||+|+|++. .++|+||||+|++||++|||||||
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~vs~~y~~~--~~vL~~isl~i~~Ge~vaivG~sG 90 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETEVKDLPG-AGPLRFQKGRIEFENVHFSYADG--RETLQDVSFTVMPGQTLALVGPSG 90 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHSCCCCTT-CBCCCCSSCCEEEEEEEEESSTT--CEEEEEEEEEECTTCEEEEESSSC
T ss_pred cchhHHHHHHHHHHHHHHHhCCcccccccc-ccccCCCCCeEEEEEEEEEcCCC--CceeeeeeEEEcCCCEEEEECCCC
Confidence 456778888899999999987765432211 11122345789999999999743 469999999999999999999999
Q ss_pred CChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHH---------------HHhhhc
Q 040099 1050 SGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA---------------EMANAN 1114 (1236)
Q Consensus 1050 SGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~---------------~~a~~~ 1114 (1236)
||||||+++|+|+|+|++|+|++||.|+++++...+|++|+||||+|.+|++||+|||. +.++++
T Consensus 91 sGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~ 170 (306)
T 3nh6_A 91 AGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIH 170 (306)
T ss_dssp HHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCH
T ss_pred chHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcH
Confidence 99999999999999999999999999999999999999999999999999999999994 567788
Q ss_pred hHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCch
Q 040099 1115 GFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLS 1194 (1236)
Q Consensus 1115 ~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ 1194 (1236)
+++..+|+||+|.+|++|.+||||||||+||||||+++|+|||||||||+||+.+++.|++.|++..+++|+|+||||++
T Consensus 171 ~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~ 250 (306)
T 3nh6_A 171 DAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250 (306)
T ss_dssp HHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHH
T ss_pred HHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred hhhhcCEEEEEeCCEEEEecChhHHhhccCcccHHhhhcc
Q 040099 1195 TIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPH 1234 (1236)
Q Consensus 1195 ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~q 1234 (1236)
++..||+|+||++|+|+|.|+|++|+++ ++.|++|++.|
T Consensus 251 ~~~~aD~i~vl~~G~iv~~G~~~el~~~-~~~y~~l~~~q 289 (306)
T 3nh6_A 251 TVVNADQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQ 289 (306)
T ss_dssp HHHTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHH
T ss_pred HHHcCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHHH
Confidence 9999999999999999999999999996 89999999765
No 25
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=5.2e-53 Score=466.54 Aligned_cols=240 Identities=46% Similarity=0.749 Sum_probs=223.9
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcc
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 462 (1236)
.+|+++||+|+|++. ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.+.+...+|++
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 479999999999521 3579999999999999999999999999999999999999999999999999998888888999
Q ss_pred eEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC
Q 040099 463 IGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDP 542 (1236)
Q Consensus 463 i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p 542 (1236)
||||+|++.+|+.||+|||.++.+..+++++.++++.+++.+++.++|.|+++.+++++.+||||||||++|||||+++|
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999987656778899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchhhhhHHh
Q 040099 543 RILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRL 622 (1236)
Q Consensus 543 ~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~~~~~ 622 (1236)
++||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|++++++..+.+.|.+++..
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~~ 244 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHHh
Confidence 99999999999999999999999999877899999999999988899999999999999999999987656788887764
Q ss_pred h
Q 040099 623 Q 623 (1236)
Q Consensus 623 ~ 623 (1236)
+
T Consensus 245 ~ 245 (247)
T 2ff7_A 245 Q 245 (247)
T ss_dssp H
T ss_pred h
Confidence 3
No 26
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=6.7e-52 Score=461.25 Aligned_cols=240 Identities=46% Similarity=0.778 Sum_probs=222.3
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcc
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 462 (1236)
+.|+++||+|+|++...+++|+|+||+|++||++||+||||||||||+++|+|+++| +|+|.++|+++.+.+...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 459999999999743224699999999999999999999999999999999999987 8999999999988888888999
Q ss_pred eEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC
Q 040099 463 IGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDP 542 (1236)
Q Consensus 463 i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p 542 (1236)
|+||+|+|.+|+.||+|||.++.+...++++.++++.+++.+++..+|+|++|.+++++.+||||||||++|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999986555677888999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchhhhhHHh
Q 040099 543 RILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRL 622 (1236)
Q Consensus 543 ~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~~~~~ 622 (1236)
+|||||||||+||+.++..+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|++++++.. .+.|.+++..
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 253 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL-NGEYAEMWNM 253 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHh
Confidence 999999999999999999999999998778999999999999888999999999999999999999876 5788888776
Q ss_pred hh
Q 040099 623 QE 624 (1236)
Q Consensus 623 ~~ 624 (1236)
+.
T Consensus 254 ~~ 255 (260)
T 2ghi_A 254 QS 255 (260)
T ss_dssp HH
T ss_pred hh
Confidence 53
No 27
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=2.2e-51 Score=459.53 Aligned_cols=241 Identities=44% Similarity=0.744 Sum_probs=219.8
Q ss_pred CCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhc
Q 040099 382 RGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIRE 461 (1236)
Q Consensus 382 ~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~ 461 (1236)
.+.|+++||+|+|++.+++++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 35699999999996422357999999999999999999999999999999999999999999999999998888888889
Q ss_pred ceEEEccCCCCCchhHHHHHhcCCCCCCH-HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 040099 462 KIGLVSQEPVLLSSSIRDNIAYGKTHATK-EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIK 540 (1236)
Q Consensus 462 ~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~-~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~ 540 (1236)
+|+||+|++.+|+.||+|||.++.+.... +++.++++..++.+++..+|+|+++.+++++.+||||||||++|||||++
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998654443 66777888889999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchhhh
Q 040099 541 DPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNR 618 (1236)
Q Consensus 541 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~ 618 (1236)
+|+|||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|++++++.. .+.|.+
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~ 252 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCYRS 252 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-cHHHHH
Confidence 9999999999999999999999999999854 7899999999999888999999999999999999999876 578888
Q ss_pred hHHhh
Q 040099 619 LIRLQ 623 (1236)
Q Consensus 619 ~~~~~ 623 (1236)
++..+
T Consensus 253 ~~~~~ 257 (271)
T 2ixe_A 253 MVEAL 257 (271)
T ss_dssp HHHC-
T ss_pred HHHHh
Confidence 77654
No 28
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=3.2e-51 Score=452.22 Aligned_cols=225 Identities=46% Similarity=0.796 Sum_probs=208.8
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
+|+++||+++|++. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+.+++...+|++|
T Consensus 7 ~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 7 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred ceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 69999999999521 23699999999999999999999999999999999999999999999999999998888899999
Q ss_pred EEEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC
Q 040099 1090 GVVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1090 ~~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
+||||+|.+|++|++||+. +.+++.+++..+|.|+++.+++.+.+||||||||++|||||+++|+
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ 165 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 165 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999994 2356677888899999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHHhhhcc
Q 040099 1155 ILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPH 1234 (1236)
Q Consensus 1155 ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~q 1234 (1236)
|||||||||+||+.+++.+.+.|++..+++|+|+|||+++.+..||+|++|++|++++.|+++++++.+.+.|++++..|
T Consensus 166 lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~~~ 245 (247)
T 2ff7_A 166 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 245 (247)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHHhh
Confidence 99999999999999999999999988778999999999999988999999999999999999999986578899998765
Q ss_pred C
Q 040099 1235 T 1235 (1236)
Q Consensus 1235 ~ 1235 (1236)
.
T Consensus 246 ~ 246 (247)
T 2ff7_A 246 S 246 (247)
T ss_dssp C
T ss_pred c
Confidence 3
No 29
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=4.2e-52 Score=459.20 Aligned_cols=235 Identities=43% Similarity=0.748 Sum_probs=218.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
|+++||+|+|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+|++|+
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 357999999999999999999999999999999999999999999999999998877777888999
Q ss_pred EEccCCCCCchhHHHHHhcC-CCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCC
Q 040099 465 LVSQEPVLLSSSIRDNIAYG-KTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPR 543 (1236)
Q Consensus 465 ~v~Q~~~l~~~ti~~ni~~g-~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ 543 (1236)
||+|++.+|+.|++|||.++ .+..+++++.++++.+++.+++.++|.|+++.+++++.+||||||||++|||||+++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998 45566788999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchhhhhHHh
Q 040099 544 ILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRL 622 (1236)
Q Consensus 544 ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~~~~~ 622 (1236)
+||||||||+||+.+++.+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|++++++.. .+.|.+++..
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~~ 237 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSE 237 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHC
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc-cHHHHHHHHh
Confidence 99999999999999999999999988778999999999999888999999999999999999999875 4667777653
No 30
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=4.4e-50 Score=505.20 Aligned_cols=207 Identities=22% Similarity=0.358 Sum_probs=157.5
Q ss_pred ccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHH-HhcccC-------C---------------
Q 040099 1009 GEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISL-LQRFYD-------P--------------- 1065 (1236)
Q Consensus 1009 g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~l-L~r~~~-------~--------------- 1065 (1236)
..++++|+++. +|+||||+|++||++||+|+||||||||++. |.++.. |
T Consensus 501 ~~L~v~~l~~~--------~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 501 GWLELNGVTRN--------NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp CEEEEEEEEET--------TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred ceEEEEeeeec--------ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 35899999861 5999999999999999999999999999996 765531 2
Q ss_pred ---CCc-------EEEECCeecccCCh----------HHHhcceEEEcC-------------------------------
Q 040099 1066 ---SSG-------HITLDGVEIQKLQV----------KWLRQQMGVVSQ------------------------------- 1094 (1236)
Q Consensus 1066 ---~~G-------~I~idG~di~~i~~----------~~lR~~i~~V~Q------------------------------- 1094 (1236)
.+| .|.+||.++..-+. +.+|+.++.+|+
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 466 78999988864332 344443333222
Q ss_pred CCCCC-------------------------hhhHHHHHH----HH----------hhhchHHHhhhhchhh-hhcCCCCC
Q 040099 1095 EPVLF-------------------------SDTIRANIA----EM----------ANANGFISGLQEGYDT-LVGERGVQ 1134 (1236)
Q Consensus 1095 dp~LF-------------------------~gTIreNL~----~~----------a~~~~~i~~lp~Gldt-~vge~G~~ 1134 (1236)
|-.++ ..||.||+. +. ....+.+..+ |+.. .++.....
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~~~~~~~L~~~--gL~~~~l~~~~~~ 730 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAIFRALDTLREV--GLGYLRLGQPATE 730 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHHHHHHHHHHHT--TCTTSBTTCCGGG
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHHHHHHHHHHHc--CCCcccccCCccc
Confidence 11111 126666652 11 1112222222 4443 35677889
Q ss_pred CChhHHHHHHHHHHHccC---CCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhhcCEEEEE-----
Q 040099 1135 LSGGQKQRVAIARAIVKE---PKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKNAHLIAVV----- 1205 (1236)
Q Consensus 1135 LSGGQrQRlaLARALlr~---p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~aD~I~Vl----- 1205 (1236)
||||||||++|||+|+++ |+||||||||++||+.+.+.+.+.|+++. +|+|||+|+|+++.+..||+|++|
T Consensus 731 LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~L~p~~g 810 (842)
T 2vf7_A 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIGPGAG 810 (842)
T ss_dssp CCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSG
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCCC
Confidence 999999999999999996 79999999999999999999999998874 588999999999999889999999
Q ss_pred -eCCEEEEecChhHHhhccCc
Q 040099 1206 -SQGMIVEKGSHESLISTKNG 1225 (1236)
Q Consensus 1206 -~~G~Ive~Gt~~eLl~~~~g 1225 (1236)
++|+|++.|+|+++++.+..
T Consensus 811 ~~~G~Iv~~g~~~el~~~~~~ 831 (842)
T 2vf7_A 811 EDGGRLVAQGTPAEVAQAAGS 831 (842)
T ss_dssp GGCCSEEEEECHHHHTTCTTC
T ss_pred CCCCEEEEEcCHHHHHhCchh
Confidence 69999999999999886443
No 31
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=4.9e-50 Score=446.23 Aligned_cols=224 Identities=42% Similarity=0.747 Sum_probs=206.3
Q ss_pred ccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcc
Q 040099 1009 GEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQ 1088 (1236)
Q Consensus 1009 g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~ 1088 (1236)
+.|+++||+|+|+.....++|+|+||+|++||++||+||||||||||+++|.|+++| +|+|.+||.|+.+.+...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999999754224699999999999999999999999999999999999987 8999999999998888889999
Q ss_pred eEEEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCC
Q 040099 1089 MGVVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEP 1153 (1236)
Q Consensus 1089 i~~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p 1153 (1236)
|+||||+|.+|++|++||+. +.+++.+++..+|+|+||.+++.+.+||||||||++|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999984 223555667788999999999999999999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHHhhhc
Q 040099 1154 KILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEP 1233 (1236)
Q Consensus 1154 ~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~ 1233 (1236)
+|||||||||+||+.++..+.+.|++..+++|+|+|||+++.+..||+|++|++|++++.|+|+++++. .+.|.+++..
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 253 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL-NGEYAEMWNM 253 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHh
Confidence 999999999999999999999999998778999999999999988999999999999999999999986 7889888865
Q ss_pred c
Q 040099 1234 H 1234 (1236)
Q Consensus 1234 q 1234 (1236)
|
T Consensus 254 ~ 254 (260)
T 2ghi_A 254 Q 254 (260)
T ss_dssp H
T ss_pred h
Confidence 4
No 32
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=7.7e-50 Score=447.07 Aligned_cols=226 Identities=45% Similarity=0.745 Sum_probs=206.2
Q ss_pred cccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhc
Q 040099 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087 (1236)
Q Consensus 1008 ~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~ 1087 (1236)
.+.|+++||+++|++.+..++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+.+.+...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 45799999999997522246999999999999999999999999999999999999999999999999999888888999
Q ss_pred ceEEEcCCCCCChhhHHHHHHH----------------HhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHcc
Q 040099 1088 QMGVVSQEPVLFSDTIRANIAE----------------MANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVK 1151 (1236)
Q Consensus 1088 ~i~~V~Qdp~LF~gTIreNL~~----------------~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr 1151 (1236)
+|+||||+|.+|+.|++|||.- ..++.+++..+|+|+++.+++.+.+||||||||++|||||++
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999951 124456778888899999999999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHH
Q 040099 1152 EPKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTS 1229 (1236)
Q Consensus 1152 ~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~ 1229 (1236)
+|+|||||||||+||+.+...+.+.|++..+ ++|+|+|||+++.+..||+|++|++|+|++.|+++++++. .+.|.+
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~ 252 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCYRS 252 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-cHHHHH
Confidence 9999999999999999999999999998754 7899999999999988999999999999999999999986 788999
Q ss_pred hhhcc
Q 040099 1230 LIEPH 1234 (1236)
Q Consensus 1230 L~~~q 1234 (1236)
+++.+
T Consensus 253 ~~~~~ 257 (271)
T 2ixe_A 253 MVEAL 257 (271)
T ss_dssp HHHC-
T ss_pred HHHHh
Confidence 88654
No 33
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=9.4e-50 Score=506.11 Aligned_cols=199 Identities=29% Similarity=0.463 Sum_probs=150.3
Q ss_pred cccceeEEecCCCEEEEEcCCCCChHHHH---------HHHhcccCCC------Cc------EEEECCeecccCCh----
Q 040099 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVI---------SLLQRFYDPS------SG------HITLDGVEIQKLQV---- 1082 (1236)
Q Consensus 1028 vL~~is~~I~~Ge~vaIVG~SGSGKSTL~---------~lL~r~~~~~------~G------~I~idG~di~~i~~---- 1082 (1236)
.|+||||+|++||++||+|+||||||||+ +++.+...+. +| .|.+|..++...+.
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a 678 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA 678 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccccc
Confidence 69999999999999999999999999997 3444433332 23 35666655533211
Q ss_pred ------HHHh-------------------------------cceEEEcCCCCCCh-------------------------
Q 040099 1083 ------KWLR-------------------------------QQMGVVSQEPVLFS------------------------- 1100 (1236)
Q Consensus 1083 ------~~lR-------------------------------~~i~~V~Qdp~LF~------------------------- 1100 (1236)
+.+| +..|+++||..+++
T Consensus 679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g 758 (916)
T 3pih_A 679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG 758 (916)
T ss_dssp HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred chhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhcc
Confidence 1111 23577777765543
Q ss_pred --------hhHHHHHHHH------hhhchHHHhhhhchh-hhhcCCCCCCChhHHHHHHHHHHHccCC---CEEEEecCC
Q 040099 1101 --------DTIRANIAEM------ANANGFISGLQEGYD-TLVGERGVQLSGGQKQRVAIARAIVKEP---KILLLDEAT 1162 (1236)
Q Consensus 1101 --------gTIreNL~~~------a~~~~~i~~lp~Gld-t~vge~G~~LSGGQrQRlaLARALlr~p---~ILlLDEaT 1162 (1236)
.|++||+.-. ....+.+..+ |+. ..++..+.+||||||||++|||||+++| +||||||||
T Consensus 759 ~~i~~vl~~tv~eal~f~~~~~~~~~~~~~L~~v--GL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPT 836 (916)
T 3pih_A 759 KNISDILDMTVDEALEFFKNIPSIKRTLQVLHDV--GLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPT 836 (916)
T ss_dssp BCHHHHHSSBHHHHHHHTTTCHHHHHHHHHHHHT--TGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTT
T ss_pred CCHHHHhhCCHHHHHHHHhcchhHHHHHHHHHHc--CCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCC
Confidence 3667766411 1122222222 332 2467888999999999999999999876 799999999
Q ss_pred CCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhhcCEEEEE------eCCEEEEecChhHHhhccCcccHH
Q 040099 1163 SALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKNAHLIAVV------SQGMIVEKGSHESLISTKNGIYTS 1229 (1236)
Q Consensus 1163 SaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~aD~I~Vl------~~G~Ive~Gt~~eLl~~~~g~y~~ 1229 (1236)
++||+.+.+.+++.|+++. +|+|||+|+|+++.++.||+|++| ++|+|++.|+|+++++.+ +.|..
T Consensus 837 sGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~-~syt~ 909 (916)
T 3pih_A 837 VGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNP-HSYTG 909 (916)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCT-TCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCC-chHHH
Confidence 9999999999999999875 589999999999999999999999 899999999999999975 44543
No 34
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-49 Score=461.40 Aligned_cols=234 Identities=27% Similarity=0.466 Sum_probs=218.0
Q ss_pred CCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHh
Q 040099 381 IRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIR 460 (1236)
Q Consensus 381 ~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r 460 (1236)
..+.|+++||+|+|+.. +.++|+||||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.+.+...+|
T Consensus 16 ~~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~r 93 (390)
T 3gd7_A 16 SGGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWR 93 (390)
T ss_dssp SSCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHH
T ss_pred CCCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHh
Confidence 34679999999999632 3579999999999999999999999999999999999998 999999999999999999999
Q ss_pred cceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 040099 461 EKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIK 540 (1236)
Q Consensus 461 ~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~ 540 (1236)
++||||+|++.+|+.||+||+.+.. ...+++++++++.+++.+++.+.|.+++|.++++|.+||||||||++|||||++
T Consensus 94 r~ig~v~Q~~~lf~~tv~enl~~~~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~ 172 (390)
T 3gd7_A 94 KAFGVIPQKVFIFSGTFRKNLDPNA-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS 172 (390)
T ss_dssp HTEEEESCCCCCCSEEHHHHHCTTC-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEcCCcccCccCHHHHhhhcc-ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999998654 346788999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchhh
Q 040099 541 DPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYN 617 (1236)
Q Consensus 541 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~ 617 (1236)
+|++||||||||+||+.++..+++.|+++.+++|+|+|||+++.+..||||++|++|+|++.|+++|++.++...|.
T Consensus 173 ~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~v 249 (390)
T 3gd7_A 173 KAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFV 249 (390)
T ss_dssp TCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchHH
Confidence 99999999999999999999999999988778999999999998888999999999999999999999987655554
No 35
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=3.8e-50 Score=443.50 Aligned_cols=221 Identities=45% Similarity=0.759 Sum_probs=204.2
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
|+++||+++|++ +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+.+.+...+|++|+
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 246999999999999999999999999999999999999999999999999999888778899999
Q ss_pred EEcCCCCCChhhHHHHHH----------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC
Q 040099 1091 VVSQEPVLFSDTIRANIA----------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1091 ~V~Qdp~LF~gTIreNL~----------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
||||+|.+|++|++|||. +.+++.+++..+|.|+++.+++.+.+||||||||++|||||+++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999983 2345566778888999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHHhhhcc
Q 040099 1155 ILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPH 1234 (1236)
Q Consensus 1155 ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~q 1234 (1236)
|||||||||+||+.+++.+.+.|++..+++|+|+|||+++.+..||+|++|++|++++.|+|+++++. .+.|.+++..+
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~~~ 238 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHCC
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc-cHHHHHHHHhh
Confidence 99999999999999999999999987778999999999999988999999999999999999999986 67788887654
No 36
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=4.2e-48 Score=423.00 Aligned_cols=221 Identities=25% Similarity=0.452 Sum_probs=198.2
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcc
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 462 (1236)
+.|+++||+|+|+.+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 469999999999632 35799999999999999999999999999999999999999999999998 5
Q ss_pred eEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC
Q 040099 463 IGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDP 542 (1236)
Q Consensus 463 i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p 542 (1236)
|+||+|++++|+.||+||+.++... ...+..++++.+++.+++..+|.++++.+++++.+||||||||++|||||+++|
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p 149 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGVSY-DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 149 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTSCC-CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEEecCCcccCCCHHHHhhccCCc-ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998542 345566777888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHH-HHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchhhhh
Q 040099 543 RILLLDEATSALDSESGRMVQEA-LDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRL 619 (1236)
Q Consensus 543 ~ililDE~ts~lD~~~~~~i~~~-l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~~ 619 (1236)
++||||||||+||+.+++.+.+. ++++.+++|+|++||+++.+..||+|++|++|++++.|+++++.++ .+.|.++
T Consensus 150 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~ 226 (229)
T 2pze_A 150 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL-QPDFSSK 226 (229)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC---CHHHH
T ss_pred CEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHH
Confidence 99999999999999999999987 4555568999999999999888999999999999999999999865 3445443
No 37
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=2.2e-48 Score=427.15 Aligned_cols=225 Identities=33% Similarity=0.576 Sum_probs=203.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.|+++||+|+|+.. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 38999999999631 35799999999999999999999999999999999999999999999998 49
Q ss_pred EEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCC
Q 040099 464 GLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPR 543 (1236)
Q Consensus 464 ~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ 543 (1236)
+||+|+|++++.|++|||.++... ..++..++.+.+++.+++..+|.|++|.+++++.+||||||||++|||||+++|+
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 147 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGCQL-EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 147 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSCC-CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcCCCcCHHHHhhCcccc-CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999997642 3345667777888888888899999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHH---HHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchhhhhH
Q 040099 544 ILLLDEATSALDSESGRMVQEALD---RVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLI 620 (1236)
Q Consensus 544 ililDE~ts~lD~~~~~~i~~~l~---~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~~~ 620 (1236)
+||||||||+||+.++..+.+.|. ++.+++|+|+|||+++.+..||+|++|++|++++.|++++++.. .+.|.+++
T Consensus 148 lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 226 (237)
T 2cbz_A 148 IYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEFL 226 (237)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH-TSHHHHHH
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc-cHHHHHHH
Confidence 999999999999999999999984 44468999999999999888999999999999999999999876 67888887
Q ss_pred Hhhh
Q 040099 621 RLQE 624 (1236)
Q Consensus 621 ~~~~ 624 (1236)
..|.
T Consensus 227 ~~~~ 230 (237)
T 2cbz_A 227 RTYA 230 (237)
T ss_dssp HHTC
T ss_pred HHHH
Confidence 7654
No 38
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-48 Score=454.70 Aligned_cols=221 Identities=26% Similarity=0.467 Sum_probs=206.2
Q ss_pred ccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHh
Q 040099 1007 VMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLR 1086 (1236)
Q Consensus 1007 ~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR 1086 (1236)
..+.|+++||+++|+.. ..++|+||||+|++||+++|+||||||||||+++|.|+++ ++|+|.+||.|+.+++...+|
T Consensus 16 ~~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~r 93 (390)
T 3gd7_A 16 SGGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWR 93 (390)
T ss_dssp SSCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHH
T ss_pred CCCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHh
Confidence 34689999999999643 3469999999999999999999999999999999999998 899999999999999999999
Q ss_pred cceEEEcCCCCCChhhHHHHHH--------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccC
Q 040099 1087 QQMGVVSQEPVLFSDTIRANIA--------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKE 1152 (1236)
Q Consensus 1087 ~~i~~V~Qdp~LF~gTIreNL~--------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~ 1152 (1236)
++|+||||++.+|+.|++||+. +.+++.++..+.|.+++|.++++|.+||||||||+||||||+++
T Consensus 94 r~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~ 173 (390)
T 3gd7_A 94 KAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSK 173 (390)
T ss_dssp HTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTT
T ss_pred CCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999983 45667778889999999999999999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHH
Q 040099 1153 PKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTS 1229 (1236)
Q Consensus 1153 p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~ 1229 (1236)
|+|||||||||+||+.++..+++.|++..+++|+|+|||+++.+..||||+||++|+|++.|+|+|+++++...|..
T Consensus 174 P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~va 250 (390)
T 3gd7_A 174 AKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVA 250 (390)
T ss_dssp CCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHHHH
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchHHH
Confidence 99999999999999999999999999887789999999999999889999999999999999999999987666654
No 39
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=4.2e-48 Score=443.86 Aligned_cols=226 Identities=32% Similarity=0.502 Sum_probs=193.7
Q ss_pred CcEEEEeEEEECCCCC-CCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHH---
Q 040099 383 GDIELKDVNFSYPARP-DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKW--- 458 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~--- 458 (1236)
.-|+++||+++|+.+. ..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+...
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 3599999999996422 246999999999999999999999999999999999999999999999999999888654
Q ss_pred HhcceEEEccCCCCCch-hHHHHHhcCCC--CCCHH----HHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHH
Q 040099 459 IREKIGLVSQEPVLLSS-SIRDNIAYGKT--HATKE----EIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQR 531 (1236)
Q Consensus 459 ~r~~i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqR 531 (1236)
+|++||||||++.+|+. ||+||+.++.. ..+.+ ++.++++.+++. ........+||||||||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~-----------~~~~~~~~~LSGGqkQR 171 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG-----------DKHDSYPSNLSGGQKQR 171 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG-----------GGTTCCTTTSCHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------hHhcCChhhCCHHHHHH
Confidence 47889999999999876 99999998631 12332 344555555444 34455567999999999
Q ss_pred HHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccc
Q 040099 532 VAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSEL 608 (1236)
Q Consensus 532 iaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l 608 (1236)
++|||||+.+|++||||||||+||+.+...+.+.|+++.+ |.|+|+|||+++.+.. ||||++|++|+|+++|+++++
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999998853 8999999999999875 999999999999999999999
Q ss_pred cccccchhhhh
Q 040099 609 LENPYGAYNRL 619 (1236)
Q Consensus 609 ~~~~~~~y~~~ 619 (1236)
+.++...|.+.
T Consensus 252 ~~~p~~~~~~~ 262 (366)
T 3tui_C 252 FSHPKTPLAQK 262 (366)
T ss_dssp HSSCCSHHHHH
T ss_pred HhCCCcHHHHH
Confidence 98766666443
No 40
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=2.2e-47 Score=426.51 Aligned_cols=215 Identities=27% Similarity=0.511 Sum_probs=185.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecC--CCCHHHHhc
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLK--EFQLKWIRE 461 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~--~~~~~~~r~ 461 (1236)
-|+++||+|+|++ ..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|+
T Consensus 7 ~l~i~~ls~~y~~--~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSD--GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTT--SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECC--CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 4899999999963 245999999999999999999999999999999999999999999999999984 333456788
Q ss_pred ceEEEccCC--CCCchhHHHHHhcCCC--CCCHHH----HHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 040099 462 KIGLVSQEP--VLLSSSIRDNIAYGKT--HATKEE----IQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVA 533 (1236)
Q Consensus 462 ~i~~v~Q~~--~l~~~ti~~ni~~g~~--~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRia 533 (1236)
+||||||+| .+|..||+||+.++.. ..+.++ +.++++.. |++......+.+||||||||++
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~~~LSgGqkQRv~ 153 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRT-----------GIEHLKDKPTHCLSFGQKKRVA 153 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHT-----------TCGGGTTSBGGGSCHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCchhhcCCcccCCHHHHHHHH
Confidence 999999997 5788899999998632 223333 34444444 4444455566789999999999
Q ss_pred HHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-c-CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccccc
Q 040099 534 IARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-I-NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLE 610 (1236)
Q Consensus 534 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 610 (1236)
|||||+.+|++||||||||+||+.++..+.+.|+++. + |+|+|+|||+++.+.. ||+|++|++|+++++|++++++.
T Consensus 154 iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 154 IAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999999999885 3 8999999999999865 99999999999999999999986
Q ss_pred c
Q 040099 611 N 611 (1236)
Q Consensus 611 ~ 611 (1236)
+
T Consensus 234 ~ 234 (275)
T 3gfo_A 234 E 234 (275)
T ss_dssp H
T ss_pred C
Confidence 5
No 41
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=4.7e-47 Score=416.65 Aligned_cols=211 Identities=29% Similarity=0.512 Sum_probs=188.6
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.|+++||+++|+.. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+|| ++
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 38999999999632 24699999999999999999999999999999999999999999999999 49
Q ss_pred EEEcCCCCCChhhHHHHHH--------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCE
Q 040099 1090 GVVSQEPVLFSDTIRANIA--------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKI 1155 (1236)
Q Consensus 1090 ~~V~Qdp~LF~gTIreNL~--------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~I 1155 (1236)
+||||+|.+|+.|++|||. +..++.+.+..+|.|++|.+++.+.+||||||||++|||||+++|+|
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l 148 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADI 148 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EEEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999995 11222234455677888889999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHH---HHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHHhhh
Q 040099 1156 LLLDEATSALDIESERVVQDALD---QVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIE 1232 (1236)
Q Consensus 1156 LlLDEaTSaLD~~te~~I~~~L~---~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~ 1232 (1236)
||||||||+||+.++..+.+.|. +..+++|+|+|||+++.+..||+|++|++|++++.|+++++++. .+.|.+++.
T Consensus 149 llLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~ 227 (237)
T 2cbz_A 149 YLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEFLR 227 (237)
T ss_dssp EEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHH
T ss_pred EEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc-cHHHHHHHH
Confidence 99999999999999999999984 34468999999999999988999999999999999999999986 788999987
Q ss_pred ccC
Q 040099 1233 PHT 1235 (1236)
Q Consensus 1233 ~q~ 1235 (1236)
.|-
T Consensus 228 ~~~ 230 (237)
T 2cbz_A 228 TYA 230 (237)
T ss_dssp HTC
T ss_pred HHH
Confidence 763
No 42
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=2.4e-47 Score=418.38 Aligned_cols=214 Identities=31% Similarity=0.464 Sum_probs=179.8
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHH----
Q 040099 385 IELKDVNFSYPARP-DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWI---- 459 (1236)
Q Consensus 385 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~---- 459 (1236)
|+++||+|+|+++. +.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.+...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999996422 2469999999999999999999999999999999999999999999999999998887653
Q ss_pred hcceEEEccCCCCCch-hHHHHHhcCC-----CCCCHHH----HHHHHHHhccHHHHHhCCCCcccc-ccCCCCCCChHH
Q 040099 460 REKIGLVSQEPVLLSS-SIRDNIAYGK-----THATKEE----IQAAAEAANASHFIKNLPQGLDTN-VGEHGIQLSGGQ 528 (1236)
Q Consensus 460 r~~i~~v~Q~~~l~~~-ti~~ni~~g~-----~~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~-~g~~g~~LSgGq 528 (1236)
|++||||+|++.+|+. ||+||+.++. .....++ +.++++.. |+... ....+.+|||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgGq 150 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMA-----------ELEERFANHKPNQLSGGQ 150 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHT-----------TCCGGGTTCCGGGSCHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHC-----------CCChhhhhCChhhCCHHH
Confidence 4569999999999986 9999998742 1222222 33333333 33332 255677899999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhhcCeEEEEECCEEEEEeCcc
Q 040099 529 KQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHS 606 (1236)
Q Consensus 529 kqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~ 606 (1236)
|||++|||||+.+|++||||||||+||+.++..+.+.|+++.+ |+|+|+|||+++.++.||+|++|++|+|++.|+.+
T Consensus 151 ~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~ 230 (235)
T 3tif_A 151 QQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR 230 (235)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChh
Confidence 9999999999999999999999999999999999999998853 89999999999977779999999999999999877
Q ss_pred ccc
Q 040099 607 ELL 609 (1236)
Q Consensus 607 ~l~ 609 (1236)
++.
T Consensus 231 ~~~ 233 (235)
T 3tif_A 231 GFD 233 (235)
T ss_dssp ---
T ss_pred hhc
Confidence 653
No 43
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.4e-46 Score=410.97 Aligned_cols=208 Identities=26% Similarity=0.458 Sum_probs=185.4
Q ss_pred ccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcc
Q 040099 1009 GEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQ 1088 (1236)
Q Consensus 1009 g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~ 1088 (1236)
+.|+++||+++|+.. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+|| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 469999999999642 24699999999999999999999999999999999999999999999998 4
Q ss_pred eEEEcCCCCCChhhHHHHHH--------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC
Q 040099 1089 MGVVSQEPVLFSDTIRANIA--------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1089 i~~V~Qdp~LF~gTIreNL~--------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
|+||||+|.+|++|++||+. +..++.+++..+|.+.++.+++++.+||||||||++|||||+++|+
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 150 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 150 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred EEEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999985 1223445667788889999999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHH-HHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHHhh
Q 040099 1155 ILLLDEATSALDIESERVVQDAL-DQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLI 1231 (1236)
Q Consensus 1155 ILlLDEaTSaLD~~te~~I~~~L-~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~ 1231 (1236)
+||||||||+||+.++..+.+.+ ++..+++|+|+|||+++.+..||+|++|++|++++.|++++++++ .+.|.+++
T Consensus 151 lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 227 (229)
T 2pze_A 151 LYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL-QPDFSSKL 227 (229)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC---CHHHHH
T ss_pred EEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHh
Confidence 99999999999999999999974 555568899999999999988999999999999999999999875 56676654
No 44
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=4.1e-46 Score=467.44 Aligned_cols=203 Identities=25% Similarity=0.384 Sum_probs=153.0
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHh-cc----cC---CCCc-------------
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQ-RF----YD---PSSG------------- 1068 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~-r~----~~---~~~G------------- 1068 (1236)
.+++++++. .+|+||||+|++||.+||+|+||||||||++.|+ +. +. +..|
T Consensus 629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 588888852 2699999999999999999999999999999854 21 11 1233
Q ss_pred EEEECCeecccCC---hH-------HHh---------cceEEEcCCCCC-------------------------------
Q 040099 1069 HITLDGVEIQKLQ---VK-------WLR---------QQMGVVSQEPVL------------------------------- 1098 (1236)
Q Consensus 1069 ~I~idG~di~~i~---~~-------~lR---------~~i~~V~Qdp~L------------------------------- 1098 (1236)
.|.+||.++..-+ +. .+| +.++|+||...+
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 4889988874321 11 122 345788885321
Q ss_pred ---------------C---------hhhHHHHHHHH------hhhchHHHhhhhchhh-hhcCCCCCCChhHHHHHHHHH
Q 040099 1099 ---------------F---------SDTIRANIAEM------ANANGFISGLQEGYDT-LVGERGVQLSGGQKQRVAIAR 1147 (1236)
Q Consensus 1099 ---------------F---------~gTIreNL~~~------a~~~~~i~~lp~Gldt-~vge~G~~LSGGQrQRlaLAR 1147 (1236)
| ..|+.||+.-. ....+.+..+ |++. ..+....+||||||||++|||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~~~~~~~~~L~~~--gL~~~~l~~~~~~LSGGekQRv~LAr 858 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDV--GLGYMKLGQPATTLSGGEAQRVKLAA 858 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCHHHHHHHHHHHHT--TCSSSBTTCCGGGCCHHHHHHHHHHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcchhHHHHHHHHHHc--CCCcccccCchhhCCHHHHHHHHHHH
Confidence 1 11444444211 1112223322 4544 466778899999999999999
Q ss_pred HHccCC---CEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhhcCEEEEE------eCCEEEEecChh
Q 040099 1148 AIVKEP---KILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKNAHLIAVV------SQGMIVEKGSHE 1217 (1236)
Q Consensus 1148 ALlr~p---~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~aD~I~Vl------~~G~Ive~Gt~~ 1217 (1236)
||+++| +||||||||++||+.+.+.+.+.|+++. +|+|||+|+|+++.+..||+|++| ++|+|++.|+|+
T Consensus 859 aL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g~~~ 938 (972)
T 2r6f_A 859 ELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPE 938 (972)
T ss_dssp HHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCSEEEEESHH
T ss_pred HHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCEEEEecCHH
Confidence 999875 9999999999999999999999998864 578999999999999889999999 689999999999
Q ss_pred HHhhc
Q 040099 1218 SLIST 1222 (1236)
Q Consensus 1218 eLl~~ 1222 (1236)
++.+.
T Consensus 939 el~~~ 943 (972)
T 2r6f_A 939 EVAEV 943 (972)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 99876
No 45
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.7e-46 Score=411.63 Aligned_cols=219 Identities=28% Similarity=0.457 Sum_probs=187.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHH-hcc
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWI-REK 462 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~ 462 (1236)
-|+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+ |++
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 3899999999953 469999999999999999999999999999999999999999999999999988776554 556
Q ss_pred eEEEccCCCCCch-hHHHHHhcCC-CCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 040099 463 IGLVSQEPVLLSS-SIRDNIAYGK-THATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIK 540 (1236)
Q Consensus 463 i~~v~Q~~~l~~~-ti~~ni~~g~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~ 540 (1236)
||||+|++.+|.. |++||+.++. +....++..+.+ .+.++.++ |++...++.+.+||||||||++|||||+.
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL-----EWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHH-----HHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHH-----HHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999999987 9999999874 222222222222 23344443 35556677788999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHh-hcCeEEEEECCEEEEEeCccccccc
Q 040099 541 DPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 541 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
+|++||||||||+||+.+++.+.+.|+++. +|+|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 999999999999999999999999999885 5899999999998875 5999999999999999999988753
No 46
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=5.3e-46 Score=426.48 Aligned_cols=219 Identities=30% Similarity=0.483 Sum_probs=189.4
Q ss_pred ccEEEeEEEEECCCCC-CcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHH---
Q 040099 1009 GEVQFLRVSFKYPTRP-HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKW--- 1084 (1236)
Q Consensus 1009 g~I~f~~Vsf~Y~~~~-~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~--- 1084 (1236)
.-|+++||+++|+... ..++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+..++...
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 3599999999997432 246999999999999999999999999999999999999999999999999999988655
Q ss_pred HhcceEEEcCCCCCChh-hHHHHHHHHh------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHcc
Q 040099 1085 LRQQMGVVSQEPVLFSD-TIRANIAEMA------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVK 1151 (1236)
Q Consensus 1085 lR~~i~~V~Qdp~LF~g-TIreNL~~~a------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr 1151 (1236)
+|++||||||+|.+|.. ||+||+.-.. .+.+.++.+ |++........+||||||||++|||||+.
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~v--gL~~~~~~~~~~LSGGqkQRVaIArAL~~ 180 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLV--GLGDKHDSYPSNLSGGQKQRVAIARALAS 180 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH--TCGGGTTCCTTTSCHHHHHHHHHHHHTTT
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 47899999999999876 9999996211 112222222 55555667788999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCcccH
Q 040099 1152 EPKILLLDEATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIYT 1228 (1236)
Q Consensus 1152 ~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~ 1228 (1236)
+|+|||||||||+||+.+...|.+.|+++. .|+|+|+|||+++.+.. ||||+||++|+|++.|+++++++++...|.
T Consensus 181 ~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~p~~~~~ 260 (366)
T 3tui_C 181 NPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLA 260 (366)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSSCCSHHH
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHHH
Confidence 999999999999999999999999999875 38999999999999976 999999999999999999999987655553
Q ss_pred H
Q 040099 1229 S 1229 (1236)
Q Consensus 1229 ~ 1229 (1236)
+
T Consensus 261 ~ 261 (366)
T 3tui_C 261 Q 261 (366)
T ss_dssp H
T ss_pred H
Confidence 3
No 47
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=3.3e-46 Score=428.44 Aligned_cols=219 Identities=32% Similarity=0.524 Sum_probs=186.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCC--CCHHHHhc
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKE--FQLKWIRE 461 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~--~~~~~~r~ 461 (1236)
.|+++||+++|+ +.++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+ ......++
T Consensus 4 ~l~i~~ls~~y~---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQ---NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 489999999995 3579999999999999999999999999999999999999999999999999833 22234567
Q ss_pred ceEEEccCCCCCch-hHHHHHhcCCCC--CC----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 040099 462 KIGLVSQEPVLLSS-SIRDNIAYGKTH--AT----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAI 534 (1236)
Q Consensus 462 ~i~~v~Q~~~l~~~-ti~~ni~~g~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiai 534 (1236)
+||||+|++.+|+. ||+|||.|+... .. .+++.++++..++.++ ......+||||||||++|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~-----------~~r~~~~LSGGq~QRVal 149 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISEL-----------AGRYPHELSGGQQQRAAL 149 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGG-----------TTSCGGGSCHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchH-----------hcCChhhCCHHHHHHHHH
Confidence 89999999999975 999999998532 11 2345566666655444 444456899999999999
Q ss_pred HHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccc
Q 040099 535 ARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 535 ARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
||||+.+|++||||||||+||+.+...+++.|.++. .|.|+|+|||+++.+.. ||||++|++|+|++.|+++++..+
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999999999999998777663 48899999999999865 999999999999999999999887
Q ss_pred ccchh
Q 040099 612 PYGAY 616 (1236)
Q Consensus 612 ~~~~y 616 (1236)
+...+
T Consensus 230 p~~~~ 234 (359)
T 3fvq_A 230 PADLD 234 (359)
T ss_dssp CSCHH
T ss_pred cccHH
Confidence 54444
No 48
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=5.5e-46 Score=412.86 Aligned_cols=215 Identities=33% Similarity=0.539 Sum_probs=184.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecC--CCCHHHHhc
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLK--EFQLKWIRE 461 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~--~~~~~~~r~ 461 (1236)
-|+++||+|+|+ ++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~---~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 499999999995 246999999999999999999999999999999999999999999999999985 334556788
Q ss_pred ceEEEccCCCCCch-hHHHHHhcCC---CCCCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 040099 462 KIGLVSQEPVLLSS-SIRDNIAYGK---THATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVA 533 (1236)
Q Consensus 462 ~i~~v~Q~~~l~~~-ti~~ni~~g~---~~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRia 533 (1236)
+||||+|++.+|+. ||+||+.++. ...+. +++.++++.. |++......+.+||||||||++
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~~~LSgGqkQRv~ 169 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKV-----------GLKDKAHAYPDSLSGGQAQRVA 169 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHT-----------TCGGGTTSCGGGSCHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC-----------CCchHhcCChhhCCHHHHHHHH
Confidence 89999999998876 9999998852 11222 2334444444 4444455566789999999999
Q ss_pred HHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccc
Q 040099 534 IARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 534 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
|||||+.+|++||||||||+||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|++++++.+
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999885 47899999999999875 999999999999999999998765
Q ss_pred c
Q 040099 612 P 612 (1236)
Q Consensus 612 ~ 612 (1236)
+
T Consensus 250 ~ 250 (263)
T 2olj_A 250 P 250 (263)
T ss_dssp C
T ss_pred c
Confidence 3
No 49
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=4.6e-46 Score=414.95 Aligned_cols=214 Identities=29% Similarity=0.440 Sum_probs=188.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
-|+++|++++|+ ++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+...+++.+
T Consensus 11 ~l~~~~l~~~~~---~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQ---QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeC---CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 589999999995 35799999999999999999999999999999999999999999999999999999998899999
Q ss_pred EEEccCCCC-CchhHHHHHhcCCCCC----CHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 040099 464 GLVSQEPVL-LSSSIRDNIAYGKTHA----TKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAM 538 (1236)
Q Consensus 464 ~~v~Q~~~l-~~~ti~~ni~~g~~~~----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal 538 (1236)
+|++|++.+ ++.||+||+.++.... ..+++.++++..++.+ .......+||||||||++|||||
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLA-----------LAQRDYRVLSGGEQQRVQLARVL 156 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCST-----------TTTSBGGGCCHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChh-----------HhcCCcccCCHHHHHHHHHHHHH
Confidence 999999877 5679999999875322 2345556666555433 33344568999999999999999
Q ss_pred cC------CCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccc
Q 040099 539 IK------DPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELL 609 (1236)
Q Consensus 539 ~~------~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~ 609 (1236)
+. +|++||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++++
T Consensus 157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99 9999999999999999999999999998853 4699999999999865 9999999999999999999987
Q ss_pred cc
Q 040099 610 EN 611 (1236)
Q Consensus 610 ~~ 611 (1236)
..
T Consensus 237 ~~ 238 (266)
T 4g1u_C 237 NA 238 (266)
T ss_dssp CH
T ss_pred Cc
Confidence 64
No 50
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=3.1e-46 Score=431.37 Aligned_cols=219 Identities=27% Similarity=0.457 Sum_probs=189.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.|+++||+++|+ +.++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. +++|
T Consensus 3 ~l~~~~l~~~yg---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 489999999995 35799999999999999999999999999999999999999999999999999887765 4679
Q ss_pred EEEccCCCCCch-hHHHHHhcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 040099 464 GLVSQEPVLLSS-SIRDNIAYGKT--HATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIAR 536 (1236)
Q Consensus 464 ~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiAR 536 (1236)
|||+|++.||+. ||+|||.|+.. ..+. +++.++++..++.+ .......+||||||||++|||
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------~~~r~p~~LSGGqrQRVaiAr 146 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH-----------LLDRKPKALSGGQRQRVAIGR 146 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGG-----------GTTCCGGGSCHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhHCCHHHHHHHHHHH
Confidence 999999999975 99999998732 2233 33445555554443 444555689999999999999
Q ss_pred HhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccccc
Q 040099 537 AMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENPY 613 (1236)
Q Consensus 537 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~~ 613 (1236)
||+.+|++||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+.. ||||++|++|+|++.|+++++...+.
T Consensus 147 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~ 226 (381)
T 3rlf_A 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226 (381)
T ss_dssp HHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCc
Confidence 99999999999999999999999999999998853 8999999999998865 99999999999999999999988765
Q ss_pred chhhh
Q 040099 614 GAYNR 618 (1236)
Q Consensus 614 ~~y~~ 618 (1236)
..|..
T Consensus 227 ~~~v~ 231 (381)
T 3rlf_A 227 DRFVA 231 (381)
T ss_dssp BHHHH
T ss_pred cHHHH
Confidence 55543
No 51
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=7.9e-46 Score=413.89 Aligned_cols=209 Identities=27% Similarity=0.452 Sum_probs=182.0
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecc--cCChHHHhc
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQ--KLQVKWLRQ 1087 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~--~i~~~~lR~ 1087 (1236)
-|+++||+++|++. .++|+||||+|++||++||+||||||||||+++|.|+++|++|+|++||.|+. ..+...+|+
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 48999999999753 35999999999999999999999999999999999999999999999999994 445567899
Q ss_pred ceEEEcCCC--CCChhhHHHHHHHHh------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCC
Q 040099 1088 QMGVVSQEP--VLFSDTIRANIAEMA------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEP 1153 (1236)
Q Consensus 1088 ~i~~V~Qdp--~LF~gTIreNL~~~a------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p 1153 (1236)
+|+||||+| .+|..|++||+.-.. .+.+.++.+ |++........+||||||||++|||||+.+|
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P 162 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGVLVMEP 162 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHHHHHTTCC
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc--CCchhhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 999999998 578899999995211 111222222 4555556677889999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1154 KILLLDEATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1154 ~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
+|||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+.. ||||++|++|+|++.|++++++++
T Consensus 163 ~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 163 KVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999998875 38999999999999975 999999999999999999999875
No 52
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=8.3e-46 Score=406.16 Aligned_cols=208 Identities=27% Similarity=0.397 Sum_probs=176.7
Q ss_pred EEEeEEEEECCCCC-CcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHH----
Q 040099 1011 VQFLRVSFKYPTRP-HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWL---- 1085 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~-~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~l---- 1085 (1236)
|+++||+++|+..+ ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+..++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997432 2469999999999999999999999999999999999999999999999999999887654
Q ss_pred hcceEEEcCCCCCChh-hHHHHHHHHhh---------------hchHHHhhhhchhhhh-cCCCCCCChhHHHHHHHHHH
Q 040099 1086 RQQMGVVSQEPVLFSD-TIRANIAEMAN---------------ANGFISGLQEGYDTLV-GERGVQLSGGQKQRVAIARA 1148 (1236)
Q Consensus 1086 R~~i~~V~Qdp~LF~g-TIreNL~~~a~---------------~~~~i~~lp~Gldt~v-ge~G~~LSGGQrQRlaLARA 1148 (1236)
|++|+||||+|.+|.. |++||+.-... +.+.+.. -|++... .....+||||||||++||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~l~~~~~~~~~~~LSgGq~QRv~iAra 159 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM--AELEERFANHKPNQLSGGQQQRVAIARA 159 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHH--TTCCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHH--CCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 4579999999999987 99999952111 1111111 1343332 56678999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHh
Q 040099 1149 IVKEPKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLI 1220 (1236)
Q Consensus 1149 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl 1220 (1236)
|+.+|+|||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++..+.||+|++|++|+|++.|+.+++.
T Consensus 160 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 160 LANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC---
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhhc
Confidence 9999999999999999999999999999998753 89999999999987779999999999999999988764
No 53
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.2e-45 Score=404.48 Aligned_cols=209 Identities=24% Similarity=0.398 Sum_probs=184.1
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHH-hcc
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWL-RQQ 1088 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~l-R~~ 1088 (1236)
-|+++||+++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+...+ |++
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 3899999999964 359999999999999999999999999999999999999999999999999988876655 556
Q ss_pred eEEEcCCCCCChh-hHHHHHHHHh-----------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEE
Q 040099 1089 MGVVSQEPVLFSD-TIRANIAEMA-----------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKIL 1156 (1236)
Q Consensus 1089 i~~V~Qdp~LF~g-TIreNL~~~a-----------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~IL 1156 (1236)
|+||||+|.+|.+ |++||+.-.. .+.++++.++ |++...+....+||||||||++|||||+++|+||
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ll 161 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLL 161 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999999987 9999995211 1122333333 5767777888999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 040099 1157 LLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1157 lLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|||||||+||+.+.+.+.+.|++.. +++|+|+|||+++.+. .||+|++|++|++++.|+++++++.
T Consensus 162 lLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 162 MMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 9999999999999999999998875 5899999999998875 5999999999999999999999763
No 54
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=7.6e-46 Score=412.98 Aligned_cols=216 Identities=30% Similarity=0.499 Sum_probs=184.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCC----------
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKE---------- 453 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~---------- 453 (1236)
-|+++|++++|+ ++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 6 ~l~i~~l~~~y~---~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 389999999995 2469999999999999999999999999999999999999999999999999862
Q ss_pred CCH---HHHhcceEEEccCCCCCch-hHHHHHhcCC---CCCCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCC
Q 040099 454 FQL---KWIREKIGLVSQEPVLLSS-SIRDNIAYGK---THATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGI 522 (1236)
Q Consensus 454 ~~~---~~~r~~i~~v~Q~~~l~~~-ti~~ni~~g~---~~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~ 522 (1236)
.+. ..+|++||||+|++.+|+. ||+||+.++. ..... +++.++++..++.+++ ......
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~ 152 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERA----------QGKYPV 152 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHH----------HTSCGG
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchh----------hcCCcc
Confidence 443 3467789999999998876 9999998852 11222 3344555555554440 344456
Q ss_pred CCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEE
Q 040099 523 QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIV 600 (1236)
Q Consensus 523 ~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~ 600 (1236)
+||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+++
T Consensus 153 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (262)
T 1b0u_A 153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 232 (262)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 899999999999999999999999999999999999999999999885 47899999999999864 9999999999999
Q ss_pred EEeCcccccccc
Q 040099 601 EKGTHSELLENP 612 (1236)
Q Consensus 601 ~~g~~~~l~~~~ 612 (1236)
+.|++++++.++
T Consensus 233 ~~g~~~~~~~~~ 244 (262)
T 1b0u_A 233 EEGDPEQVFGNP 244 (262)
T ss_dssp EEECHHHHHHSC
T ss_pred EeCCHHHHHhCc
Confidence 999999998653
No 55
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=1.9e-44 Score=454.31 Aligned_cols=204 Identities=22% Similarity=0.370 Sum_probs=151.4
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHh-c----ccC---CCCcE------------
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQ-R----FYD---PSSGH------------ 1069 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~-r----~~~---~~~G~------------ 1069 (1236)
.+++++++. .+|+||||+|++||++||+|+||||||||+++|+ + .+. +..|.
T Consensus 647 ~L~v~~l~~--------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 718 (993)
T 2ygr_A 647 QLTVVGARE--------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDK 718 (993)
T ss_dssp EEEEEEECS--------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSE
T ss_pred eEEEecCcc--------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccce
Confidence 588888852 2699999999999999999999999999999853 2 222 23343
Q ss_pred -EEECCeecccCC---h-------HHHh---------cceEEEcCCCCC-------------------------------
Q 040099 1070 -ITLDGVEIQKLQ---V-------KWLR---------QQMGVVSQEPVL------------------------------- 1098 (1236)
Q Consensus 1070 -I~idG~di~~i~---~-------~~lR---------~~i~~V~Qdp~L------------------------------- 1098 (1236)
|.+|+.++..-+ + +.+| +..+|+||...+
T Consensus 719 ~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce 798 (993)
T 2ygr_A 719 LVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCE 798 (993)
T ss_dssp EECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECT
T ss_pred EEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeeh
Confidence 566666663211 1 1122 345777775321
Q ss_pred ---------------C-hhhHHHH--------HHHHh------hhchHHHhhhhchhh-hhcCCCCCCChhHHHHHHHHH
Q 040099 1099 ---------------F-SDTIRAN--------IAEMA------NANGFISGLQEGYDT-LVGERGVQLSGGQKQRVAIAR 1147 (1236)
Q Consensus 1099 ---------------F-~gTIreN--------L~~~a------~~~~~i~~lp~Gldt-~vge~G~~LSGGQrQRlaLAR 1147 (1236)
+ ..+|.|| +.-.. ...+.+..+ |+.. ..+.....||||||||++|||
T Consensus 799 ~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~~~~~~~~~~L~~l--gL~~~~l~~~~~~LSGGekQRv~LAr 876 (993)
T 2ygr_A 799 VCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPIAGVHRYLRTLVDV--GLGYVRLGQPAPTLSGGEAQRVKLAS 876 (993)
T ss_dssp TTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTCHHHHHHHHHHHHT--TGGGSBTTCCGGGSCHHHHHHHHHHH
T ss_pred hccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcchHHHHHHHHHHHc--CCCcccccCccccCCHHHHHHHHHHH
Confidence 0 1244444 32111 111222222 4554 567788899999999999999
Q ss_pred HHccCC---CEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhhcCEEEEE------eCCEEEEecChh
Q 040099 1148 AIVKEP---KILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKNAHLIAVV------SQGMIVEKGSHE 1217 (1236)
Q Consensus 1148 ALlr~p---~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~aD~I~Vl------~~G~Ive~Gt~~ 1217 (1236)
||+++| +||||||||++||+.+.+.+.+.|+++. +|.|||+|+|+++.+..||+|++| ++|+|++.|+|+
T Consensus 877 aL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~~G~Iv~~G~~~ 956 (993)
T 2ygr_A 877 ELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGGGTVVAQGTPE 956 (993)
T ss_dssp HHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTSCSEEEEEECHH
T ss_pred HHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCCCCEEEEecCHH
Confidence 999875 9999999999999999999999998864 588999999999999889999999 689999999999
Q ss_pred HHhhcc
Q 040099 1218 SLISTK 1223 (1236)
Q Consensus 1218 eLl~~~ 1223 (1236)
++.+.+
T Consensus 957 el~~~~ 962 (993)
T 2ygr_A 957 DVAAVP 962 (993)
T ss_dssp HHHHCT
T ss_pred HHHhCC
Confidence 998763
No 56
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.5e-45 Score=401.33 Aligned_cols=207 Identities=28% Similarity=0.424 Sum_probs=177.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHH---Hh
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKW---IR 460 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~r 460 (1236)
-|+++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 3899999999953 56999999999999999999999999999999999999999999999999998776543 34
Q ss_pred -cceEEEccCCCCCch-hHHHHHhcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 040099 461 -EKIGLVSQEPVLLSS-SIRDNIAYGKT--HATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRV 532 (1236)
Q Consensus 461 -~~i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRi 532 (1236)
++|+||+|++.+|.. |++||+.++.. .... +++.++++.. |++........+||||||||+
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGq~qrv 149 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSEL-----------GLGDKLSRKPYELSGGEQQRV 149 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT-----------TCTTCTTCCGGGSCHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHHH
Confidence 689999999998875 99999988531 1122 2233333333 444445566679999999999
Q ss_pred HHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhhcCeEEEEECCEEEEEeC
Q 040099 533 AIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGT 604 (1236)
Q Consensus 533 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~ 604 (1236)
+|||||+.+|++||||||||+||+.++..+.+.|+++. +|+|+|++||+++.+..||+|++|++|+++++|+
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 99999999999999999999999999999999999885 4899999999999887799999999999999986
No 57
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=3.3e-45 Score=421.88 Aligned_cols=217 Identities=29% Similarity=0.509 Sum_probs=187.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. +++|
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 389999999995 34699999999999999999999999999999999999999999999999999877653 5789
Q ss_pred EEEccCCCCCch-hHHHHHhcCCCCC--C----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 040099 464 GLVSQEPVLLSS-SIRDNIAYGKTHA--T----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIAR 536 (1236)
Q Consensus 464 ~~v~Q~~~l~~~-ti~~ni~~g~~~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiAR 536 (1236)
|||+|++.+|+. ||+|||.|+.... + ++++.++++..++.++. .....+||||||||++|||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-----------~r~~~~LSgGq~QRvalAr 146 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLL-----------DRKPTQLSGGQQQRVALAR 146 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGT-----------TSCGGGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHh-----------cCChhhCCHHHHHHHHHHH
Confidence 999999999975 9999999975321 1 23455666666555444 3444689999999999999
Q ss_pred HhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHh-hcCeEEEEECCEEEEEeCccccccccc
Q 040099 537 AMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSELLENPY 613 (1236)
Q Consensus 537 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l~~~~~ 613 (1236)
||+.+|++||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+. .||+|++|++|+|++.|++++++.++.
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~ 226 (359)
T 2yyz_A 147 ALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPK 226 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcc
Confidence 99999999999999999999999999999998753 889999999999885 599999999999999999999987654
Q ss_pred chh
Q 040099 614 GAY 616 (1236)
Q Consensus 614 ~~y 616 (1236)
..|
T Consensus 227 ~~~ 229 (359)
T 2yyz_A 227 NMF 229 (359)
T ss_dssp BHH
T ss_pred cHH
Confidence 433
No 58
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=3e-45 Score=407.56 Aligned_cols=214 Identities=22% Similarity=0.388 Sum_probs=183.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCH-HHHhcc
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQL-KWIREK 462 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 462 (1236)
-|+++|++|+|++ +++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+|++
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999952 469999999999999999999999999999999999999999999999999987664 345778
Q ss_pred eEEEccCCCCCc-hhHHHHHhcCCCC---------------CCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCCh
Q 040099 463 IGLVSQEPVLLS-SSIRDNIAYGKTH---------------ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSG 526 (1236)
Q Consensus 463 i~~v~Q~~~l~~-~ti~~ni~~g~~~---------------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSg 526 (1236)
||||+|++.+|. .||+||+.++... ...++.. ..+.+.++.+ |++......+.+|||
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSg 156 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV-----EKAFKILEFL--KLSHLYDRKAGELSG 156 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHH-----HHHHHHHHHT--TCGGGTTSBGGGSCH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHH-----HHHHHHHHHc--CCchhhCCCchhCCH
Confidence 999999998886 4999999986421 1111111 1123344444 666666777789999
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc-CceEEEEecCchhHh-hcCeEEEEECCEEEEEeC
Q 040099 527 GQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI-NRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGT 604 (1236)
Q Consensus 527 GqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~ 604 (1236)
|||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ |+|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 157 GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~ 236 (257)
T 1g6h_A 157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236 (257)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeC
Confidence 999999999999999999999999999999999999999998854 799999999999986 599999999999999999
Q ss_pred ccc
Q 040099 605 HSE 607 (1236)
Q Consensus 605 ~~~ 607 (1236)
+++
T Consensus 237 ~~~ 239 (257)
T 1g6h_A 237 GEE 239 (257)
T ss_dssp SHH
T ss_pred HHH
Confidence 988
No 59
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=2.4e-45 Score=413.18 Aligned_cols=231 Identities=25% Similarity=0.427 Sum_probs=183.6
Q ss_pred HHHHHhccCCCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcC
Q 040099 357 KFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRF 436 (1236)
Q Consensus 357 ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~ 436 (1236)
|+.++++.+++.... .......+.|+++||+|.| +++|+|+||+|++||++||+||||||||||+++|+|+
T Consensus 17 ~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 17 GFGELFEKAKQNNNN----RKTSNGDDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp HHHHHHHHCC---------------------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred HHHHHhccccccccc----ccccCCCceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 667777655432211 1111223569999999964 3599999999999999999999999999999999999
Q ss_pred CCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCcccc
Q 040099 437 YDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTN 516 (1236)
Q Consensus 437 ~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ 516 (1236)
++|++|+|.++| +|+||+|++.+|++|++|||. +.. .....+.++++..++.+++..+|.++++.
T Consensus 88 ~~p~~G~I~~~g-------------~i~~v~Q~~~l~~~tv~enl~-~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 152 (290)
T 2bbs_A 88 LEPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENII-GVS-YDEYRYRSVIKACQLEEDISKFAEKDNIV 152 (290)
T ss_dssp SCEEEEEEECCS-------------CEEEECSSCCCCSSBHHHHHH-TTC-CCHHHHHHHHHHTTCHHHHHTSTTGGGCB
T ss_pred CCCCCcEEEECC-------------EEEEEeCCCccCcccHHHHhh-Ccc-cchHHHHHHHHHhChHHHHHhccccccch
Confidence 999999999998 599999999999999999998 543 23455666778889999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHH-HHHccCceEEEEecCchhHhhcCeEEEEE
Q 040099 517 VGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEAL-DRVMINRTTVIVSHRLSLIRNANIIAVIQ 595 (1236)
Q Consensus 517 ~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l-~~~~~~~t~i~itH~~~~~~~ad~i~vl~ 595 (1236)
+++++.+||||||||++|||||+++|++||||||||+||+.++..+.+.+ +++.+++|+|+|||+++.+..||+|++|+
T Consensus 153 ~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~ 232 (290)
T 2bbs_A 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 232 (290)
T ss_dssp C----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEE
T ss_pred hcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999864 45556899999999999988899999999
Q ss_pred CCEEEEEeCccccccc
Q 040099 596 QGKIVEKGTHSELLEN 611 (1236)
Q Consensus 596 ~G~i~~~g~~~~l~~~ 611 (1236)
+|++++.|++++++..
T Consensus 233 ~G~i~~~g~~~~l~~~ 248 (290)
T 2bbs_A 233 EGSSYFYGTFSELQNL 248 (290)
T ss_dssp TTEEEEEECHHHHHHH
T ss_pred CCeEEEeCCHHHHhhh
Confidence 9999999999998753
No 60
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.4e-45 Score=406.49 Aligned_cols=213 Identities=29% Similarity=0.444 Sum_probs=184.8
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcc
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 462 (1236)
+.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....+|++
T Consensus 14 ~~l~i~~l~~~y~---~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 14 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CeEEEEEEEEEEC---CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 4699999999995 3579999999999999999999999999999999999999999999999999876 45667889
Q ss_pred eEEEccCCCCCch-hHHHHHhcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 040099 463 IGLVSQEPVLLSS-SIRDNIAYGKT--HATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIA 535 (1236)
Q Consensus 463 i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiA 535 (1236)
||||+|++.+|.. |++||+.++.. .... +++.++++..++. ......+.+||||||||++||
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~-----------~~~~~~~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-----------EKIKDRVSTYSKGMVRKLLIA 158 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-----------GGGGSBGGGCCHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCc-----------hHhcCChhhCCHHHHHHHHHH
Confidence 9999999998876 99999987521 1222 2344555555443 334455668999999999999
Q ss_pred HHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccccc
Q 040099 536 RAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLE 610 (1236)
Q Consensus 536 Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 610 (1236)
|||+.+|++||||||||+||+.+...+.+.|+++. +|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999999999999885 47899999999999876 99999999999999999998864
No 61
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.5e-45 Score=423.37 Aligned_cols=217 Identities=35% Similarity=0.513 Sum_probs=186.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. +++|
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESS---SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 389999999995 34699999999999999999999999999999999999999999999999999877653 5689
Q ss_pred EEEccCCCCCch-hHHHHHhcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 040099 464 GLVSQEPVLLSS-SIRDNIAYGKT--HATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIAR 536 (1236)
Q Consensus 464 ~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiAR 536 (1236)
|||+|++.+|+. ||+|||.|+.. .... +++.++++..++. ........+||||||||++|||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-----------~~~~r~~~~LSGGq~QRvalAr 146 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHID-----------KLLNRYPWQLSGGQQQRVAIAR 146 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-----------TCTTCCGGGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------hHhhCChhhCCHHHHHHHHHHH
Confidence 999999999975 99999998631 1222 2344555555443 3344555689999999999999
Q ss_pred HhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHh-hcCeEEEEECCEEEEEeCccccccccc
Q 040099 537 AMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSELLENPY 613 (1236)
Q Consensus 537 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l~~~~~ 613 (1236)
||+.+|++||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+. .||+|++|++|+|++.|++++++.++.
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~ 226 (362)
T 2it1_A 147 ALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPK 226 (362)
T ss_dssp HHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999998853 899999999999875 599999999999999999999987654
Q ss_pred chh
Q 040099 614 GAY 616 (1236)
Q Consensus 614 ~~y 616 (1236)
..|
T Consensus 227 ~~~ 229 (362)
T 2it1_A 227 YKF 229 (362)
T ss_dssp BHH
T ss_pred chH
Confidence 333
No 62
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=3.1e-45 Score=420.88 Aligned_cols=219 Identities=30% Similarity=0.502 Sum_probs=187.4
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcc
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 462 (1236)
..|+++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+. .+++
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 36999999999942 2469999999999999999999999999999999999999999999999999977654 3678
Q ss_pred eEEEccCCCCCch-hHHHHHhcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 040099 463 IGLVSQEPVLLSS-SIRDNIAYGKT--HATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIA 535 (1236)
Q Consensus 463 i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiA 535 (1236)
||||+|++.+|+. ||+|||.|+.. ..+. +++.++++..++.++ ......+||||||||++||
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~-----------~~r~~~~LSGGq~QRvalA 157 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESY-----------ANRFPHELSGGQQQRVALA 157 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGG-----------TTSCGGGSCHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-----------hcCCcccCCHHHHHHHHHH
Confidence 9999999999975 99999998632 1222 345555555555444 3444568999999999999
Q ss_pred HHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccccccc
Q 040099 536 RAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENP 612 (1236)
Q Consensus 536 Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~ 612 (1236)
|||+.+|++||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|+|++.|+++++..++
T Consensus 158 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 158 RALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp HHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999998853 8999999999998865 9999999999999999999998765
Q ss_pred cchh
Q 040099 613 YGAY 616 (1236)
Q Consensus 613 ~~~y 616 (1236)
...|
T Consensus 238 ~~~~ 241 (355)
T 1z47_A 238 GTLF 241 (355)
T ss_dssp SSHH
T ss_pred cchH
Confidence 4333
No 63
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=7.4e-45 Score=420.92 Aligned_cols=217 Identities=27% Similarity=0.455 Sum_probs=182.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. +++|
T Consensus 11 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEEC---CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 499999999995 24699999999999999999999999999999999999999999999999999877653 5689
Q ss_pred EEEccCCCCCch-hHHHHHhcCCCC--CCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 040099 464 GLVSQEPVLLSS-SIRDNIAYGKTH--ATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIAR 536 (1236)
Q Consensus 464 ~~v~Q~~~l~~~-ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiAR 536 (1236)
|||+|++.+|+. ||+|||.|+... .+. +++.++++..++.++ ......+||||||||++|||
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-----------~~r~~~~LSGGq~QRvalAr 154 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL-----------LNRYPAQLSGGQRQRVAVAR 154 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGG-----------TTSCTTTCCSSCHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHH
Confidence 999999999875 999999998532 233 234555555554443 44555699999999999999
Q ss_pred HhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHh-hcCeEEEEECCEEEEEeCccccccccc
Q 040099 537 AMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSELLENPY 613 (1236)
Q Consensus 537 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l~~~~~ 613 (1236)
||+.+|++||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+. .||+|++|++|+|++.|++++++.++.
T Consensus 155 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~ 234 (372)
T 1v43_A 155 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN 234 (372)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcc
Confidence 99999999999999999999999999999998853 789999999999885 599999999999999999999987654
Q ss_pred chh
Q 040099 614 GAY 616 (1236)
Q Consensus 614 ~~y 616 (1236)
..|
T Consensus 235 ~~~ 237 (372)
T 1v43_A 235 SVF 237 (372)
T ss_dssp BHH
T ss_pred cHH
Confidence 443
No 64
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=6.6e-45 Score=406.66 Aligned_cols=213 Identities=31% Similarity=0.542 Sum_probs=185.8
Q ss_pred EEEEeEEEECCCCCC--CccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcc
Q 040099 385 IELKDVNFSYPARPD--EQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~--~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 462 (1236)
|+++|++|+|+.+.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 789999999962111 4699999999999999999999999999999999999999999999999998642 66788
Q ss_pred eEEEccCC--CCCchhHHHHHhcCCCC-----CCHHHHHHHHHHhccH--HHHHhCCCCccccccCCCCCCChHHHHHHH
Q 040099 463 IGLVSQEP--VLLSSSIRDNIAYGKTH-----ATKEEIQAAAEAANAS--HFIKNLPQGLDTNVGEHGIQLSGGQKQRVA 533 (1236)
Q Consensus 463 i~~v~Q~~--~l~~~ti~~ni~~g~~~-----~~~~~~~~~~~~~~~~--~~i~~l~~g~~t~~g~~g~~LSgGqkqRia 533 (1236)
||||+|+| .+++.|++||+.++... ...+++.++++..++. ++..+.| .+||||||||++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------~~LSgGq~qRv~ 148 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKRRVA 148 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----------GGSCHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----------hhCCHHHHHHHH
Confidence 99999996 46778999999987421 1245677778877776 5554443 589999999999
Q ss_pred HHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccc
Q 040099 534 IARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 534 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
|||||+.+|++||||||||+||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||++++|++|++++.|++++++.+
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999885 48999999999999875 999999999999999999998764
No 65
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.4e-44 Score=401.63 Aligned_cols=210 Identities=32% Similarity=0.492 Sum_probs=182.4
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecc--cCChHHHhc
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQ--KLQVKWLRQ 1087 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~--~i~~~~lR~ 1087 (1236)
-|+++||+++|.+ .++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 4999999999964 35999999999999999999999999999999999999999999999999985 334567788
Q ss_pred ceEEEcCCCCCChh-hHHHHHHHHh----h---------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCC
Q 040099 1088 QMGVVSQEPVLFSD-TIRANIAEMA----N---------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEP 1153 (1236)
Q Consensus 1088 ~i~~V~Qdp~LF~g-TIreNL~~~a----~---------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p 1153 (1236)
+|+||||++.+|.. |++||+.-.. + +.+.++.+ |++........+||||||||++|||||+.+|
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p 178 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKV--GLKDKAHAYPDSLSGGQAQRVAIARALAMEP 178 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC--CCchHhcCChhhCCHHHHHHHHHHHHHHCCC
Confidence 99999999999987 9999995311 1 11122222 4555556677899999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccC
Q 040099 1154 KILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKN 1224 (1236)
Q Consensus 1154 ~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~ 1224 (1236)
++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++++++.
T Consensus 179 ~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 251 (263)
T 2olj_A 179 KIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQ 251 (263)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCC
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcc
Confidence 9999999999999999999999998874 47899999999999875 99999999999999999999987643
No 66
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=7e-45 Score=417.96 Aligned_cols=215 Identities=29% Similarity=0.528 Sum_probs=186.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
|+++|++++|+ ++ +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+. .+++||
T Consensus 2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 78999999995 24 9999999999999999999999999999999999999999999999999987554 367899
Q ss_pred EEccCCCCCch-hHHHHHhcCCC---CCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 040099 465 LVSQEPVLLSS-SIRDNIAYGKT---HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIK 540 (1236)
Q Consensus 465 ~v~Q~~~l~~~-ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~ 540 (1236)
||+|++.+|+. ||+|||.|+.. ....+++.++++..++.++. .....+||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~-----------~~~~~~LSgGq~QRvalAraL~~ 144 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLL-----------DRNPLTLSGGEQQRVALARALVT 144 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTT-----------TSCGGGSCHHHHHHHHHHHHTTS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHh-----------cCChhhCCHHHHHHHHHHHHHHc
Confidence 99999999976 99999998631 11225666666666554443 34456899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHh-hcCeEEEEECCEEEEEeCcccccccccchh
Q 040099 541 DPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSELLENPYGAY 616 (1236)
Q Consensus 541 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y 616 (1236)
+|++||||||||+||+.++..+.+.|+++.+ |+|+|+|||+++.+. .||+|++|++|+|++.|+++++..++...|
T Consensus 145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~ 223 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (348)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHH
Confidence 9999999999999999999999999998853 789999999999875 599999999999999999999987654333
No 67
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2.8e-45 Score=411.11 Aligned_cols=214 Identities=25% Similarity=0.380 Sum_probs=183.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecC--CCCHHHHhc
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLK--EFQLKWIRE 461 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~--~~~~~~~r~ 461 (1236)
-|+++||+|+|++ +++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|+
T Consensus 21 ~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred eEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 5999999999953 46999999999999999999999999999999999999999999999999987 677777888
Q ss_pred ceEEEccCCCC-Cch--hHHHHHhcCCCC-------CCH---HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHH
Q 040099 462 KIGLVSQEPVL-LSS--SIRDNIAYGKTH-------ATK---EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQ 528 (1236)
Q Consensus 462 ~i~~v~Q~~~l-~~~--ti~~ni~~g~~~-------~~~---~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq 528 (1236)
+||||+|++.+ |.. ||+||+.++... ..+ +++.++++.. |++........+|||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgGq 166 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLV-----------GMSAKAQQYIGYLSTGE 166 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHT-----------TCGGGTTSBGGGSCHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHc-----------CChhHhcCChhhCCHHH
Confidence 99999999864 544 999999987421 122 2233333333 44445556667899999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc-CceE--EEEecCchhHh-hcCeEEEEECCEEEEEeC
Q 040099 529 KQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI-NRTT--VIVSHRLSLIR-NANIIAVIQQGKIVEKGT 604 (1236)
Q Consensus 529 kqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~-~~t~--i~itH~~~~~~-~ad~i~vl~~G~i~~~g~ 604 (1236)
|||++|||||+.+|++||||||||+||+.+++.+.+.|+++.+ |+|+ |+|||+++.+. .||+|++|++|++++.|+
T Consensus 167 kqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 246 (279)
T 2ihy_A 167 KQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGA 246 (279)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999998854 8899 99999999985 599999999999999999
Q ss_pred ccccccc
Q 040099 605 HSELLEN 611 (1236)
Q Consensus 605 ~~~l~~~ 611 (1236)
++++...
T Consensus 247 ~~~~~~~ 253 (279)
T 2ihy_A 247 VEDILTS 253 (279)
T ss_dssp HHHHCSH
T ss_pred HHHHhcc
Confidence 9998753
No 68
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=5.4e-45 Score=400.07 Aligned_cols=209 Identities=32% Similarity=0.466 Sum_probs=179.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
|+++|++|+|+ + +|+|+||++++ |++||+||||||||||+++|+|+++|++|+|.++|+++.+.+ ..|++||
T Consensus 2 l~~~~l~~~y~---~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLG---N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEET---T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeC---C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 68999999994 1 59999999999 999999999999999999999999999999999999987543 3467899
Q ss_pred EEccCCCCCch-hHHHHHhcCCCCCC----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 040099 465 LVSQEPVLLSS-SIRDNIAYGKTHAT----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI 539 (1236)
Q Consensus 465 ~v~Q~~~l~~~-ti~~ni~~g~~~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~ 539 (1236)
||+|++.+|+. |++||+.++..... .+++.++++.. |++........+||||||||++|||||+
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGqkqRv~lAral~ 142 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKL-----------GIAHLLDRKPARLSGGERQRVALARALV 142 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTT-----------TCTTTTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHc-----------CCHHHhcCChhhCCHHHHHHHHHHHHHH
Confidence 99999999876 99999999754222 12233333333 4444445556789999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHh-hcCeEEEEECCEEEEEeCcccccccc
Q 040099 540 KDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSELLENP 612 (1236)
Q Consensus 540 ~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l~~~~ 612 (1236)
++|++||||||||+||+.+++.+.+.|+++.+ |+|+|++||+++.+. .||+|++|++|++++.|++++++.++
T Consensus 143 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 99999999999999999999999999998853 899999999999875 49999999999999999999987653
No 69
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=4.8e-45 Score=421.15 Aligned_cols=218 Identities=31% Similarity=0.452 Sum_probs=186.2
Q ss_pred EEEEeEEEECCCCCCCc--cccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCC---HHHH
Q 040099 385 IELKDVNFSYPARPDEQ--ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQ---LKWI 459 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~--~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~---~~~~ 459 (1236)
|+++|++++|+ +.+ +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+ ....
T Consensus 4 l~i~~l~~~y~---~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 4 IIVKNVSKVFK---KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp EEEEEEEEEEG---GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEeEEEEEC---CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence 89999999995 246 999999999999999999999999999999999999999999999999986521 2234
Q ss_pred hcceEEEccCCCCCch-hHHHHHhcCCCC--CCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 040099 460 REKIGLVSQEPVLLSS-SIRDNIAYGKTH--ATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRV 532 (1236)
Q Consensus 460 r~~i~~v~Q~~~l~~~-ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRi 532 (1236)
+++||||+|++.+|+. ||+|||.|+... .+. +++.++++..++.++. .....+||||||||+
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-----------~~~~~~LSGGq~QRv 149 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVL-----------NHFPRELSGAQQQRV 149 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGT-----------TSCGGGSCHHHHHHH
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHh-----------cCChhhCCHHHHHHH
Confidence 6789999999999976 999999997532 222 3455555555554443 444568999999999
Q ss_pred HHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccc
Q 040099 533 AIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELL 609 (1236)
Q Consensus 533 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~ 609 (1236)
+|||||+.+|++||||||||+||+.++..+.+.|+++.+ |+|+|+|||+++.+.. ||+|++|++|+|++.|++++++
T Consensus 150 alAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999998853 7999999999998865 9999999999999999999998
Q ss_pred ccccchh
Q 040099 610 ENPYGAY 616 (1236)
Q Consensus 610 ~~~~~~y 616 (1236)
.++...|
T Consensus 230 ~~p~~~~ 236 (353)
T 1oxx_K 230 DNPVSIQ 236 (353)
T ss_dssp HSCSSHH
T ss_pred hCcccHH
Confidence 7654333
No 70
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.4e-44 Score=403.08 Aligned_cols=208 Identities=28% Similarity=0.399 Sum_probs=181.9
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
-++++||+++|.+ .++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+...+...+|+.+
T Consensus 11 ~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 5899999999974 3599999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCC-ChhhHHHHHHHHh----------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHcc------C
Q 040099 1090 GVVSQEPVL-FSDTIRANIAEMA----------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVK------E 1152 (1236)
Q Consensus 1090 ~~V~Qdp~L-F~gTIreNL~~~a----------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr------~ 1152 (1236)
++++|++.+ |..|++||+.-.. .+.+.++.+ |+.........+||||||||++|||||++ +
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~ 165 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQT--DCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPT 165 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHT--TCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCC
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHc--CChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCC
Confidence 999999976 6779999995211 112222222 34334445567899999999999999999 9
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1153 PKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1153 p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||||++|++|++++.|++++++..
T Consensus 166 p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 238 (266)
T 4g1u_C 166 PRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNA 238 (266)
T ss_dssp CEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCCH
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhCc
Confidence 999999999999999999999999998753 4699999999999875 999999999999999999999764
No 71
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.7e-44 Score=396.97 Aligned_cols=209 Identities=26% Similarity=0.407 Sum_probs=182.8
Q ss_pred cccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhc
Q 040099 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087 (1236)
Q Consensus 1008 ~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~ 1087 (1236)
.+.|+++||+++|.+ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. ....+|+
T Consensus 13 ~~~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~ 88 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRK 88 (256)
T ss_dssp -CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHT
T ss_pred CCeEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhh
Confidence 357999999999963 359999999999999999999999999999999999999999999999999976 4567889
Q ss_pred ceEEEcCCCCCChh-hHHHHHHHHhh------------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC
Q 040099 1088 QMGVVSQEPVLFSD-TIRANIAEMAN------------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1088 ~i~~V~Qdp~LF~g-TIreNL~~~a~------------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
+|+||||+|.+|.+ |++||+.-... +.+.++.+ |++........+||||||||++|||||+++|+
T Consensus 89 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 166 (256)
T 1vpl_A 89 LISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIA--GLGEKIKDRVSTYSKGMVRKLLIARALMVNPR 166 (256)
T ss_dssp TEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCS
T ss_pred cEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--CCchHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999887 99999952111 11222221 55555566778999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1155 ILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1155 ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|||||||||+||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 167 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 167 LAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236 (256)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999875 57899999999999976 999999999999999999999763
No 72
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=2.2e-44 Score=413.34 Aligned_cols=215 Identities=31% Similarity=0.494 Sum_probs=183.5
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeeccc--CChHHHhc
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQK--LQVKWLRQ 1087 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~--i~~~~lR~ 1087 (1236)
.|+++||+++|.+ .++|+||||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.|+.+ .+....|+
T Consensus 4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 4899999999964 359999999999999999999999999999999999999999999999999933 22334578
Q ss_pred ceEEEcCCCCCChh-hHHHHHHH------------HhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC
Q 040099 1088 QMGVVSQEPVLFSD-TIRANIAE------------MANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1088 ~i~~V~Qdp~LF~g-TIreNL~~------------~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
+||||+|++.+|.. |++||+.- ...+.+.++.+ |++........+||||||||+||||||+.+|+
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~--gL~~~~~r~~~~LSGGq~QRValArAL~~~P~ 158 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELT--GISELAGRYPHELSGGQQQRAALARALAPDPE 158 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHH--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 89999999999975 99999951 11122222222 55555667778999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCcccHH
Q 040099 1155 ILLLDEATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIYTS 1229 (1236)
Q Consensus 1155 ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~ 1229 (1236)
+||||||||+||+.+...+++.|++.. .+.|+|+|||+++.+.. ||||+||++|+|++.|+|+++++++...|..
T Consensus 159 lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~~a 236 (359)
T 3fvq_A 159 LILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADLDAA 236 (359)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSCHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCcccHHHH
Confidence 999999999999999999998776653 47899999999999865 9999999999999999999999876655544
No 73
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.1e-44 Score=420.54 Aligned_cols=217 Identities=26% Similarity=0.451 Sum_probs=185.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCC------CCHH
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKE------FQLK 457 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~------~~~~ 457 (1236)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+ .+.
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~- 78 (372)
T 1g29_1 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP- 78 (372)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG-
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH-
Confidence 389999999995 3469999999999999999999999999999999999999999999999999865 443
Q ss_pred HHhcceEEEccCCCCCch-hHHHHHhcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHH
Q 040099 458 WIREKIGLVSQEPVLLSS-SIRDNIAYGKT--HATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQ 530 (1236)
Q Consensus 458 ~~r~~i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkq 530 (1236)
.+++||||+|++.+|+. ||+|||.|+.. .... +++.++++..++.++ ......+|||||||
T Consensus 79 -~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-----------~~r~~~~LSGGq~Q 146 (372)
T 1g29_1 79 -KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTEL-----------LNRKPRELSGGQRQ 146 (372)
T ss_dssp -GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGG-----------TTCCGGGSCHHHHH
T ss_pred -hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchH-----------hcCCcccCCHHHHH
Confidence 35789999999999864 99999998632 1222 345555555555444 34445689999999
Q ss_pred HHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHh-hcCeEEEEECCEEEEEeCccc
Q 040099 531 RVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSE 607 (1236)
Q Consensus 531 RiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~ 607 (1236)
|++|||||+.+|++||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+. .||+|++|++|+|++.|++++
T Consensus 147 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998853 889999999999886 499999999999999999999
Q ss_pred ccccccchh
Q 040099 608 LLENPYGAY 616 (1236)
Q Consensus 608 l~~~~~~~y 616 (1236)
++.++...|
T Consensus 227 l~~~p~~~~ 235 (372)
T 1g29_1 227 VYDKPANTF 235 (372)
T ss_dssp HHHSCSBHH
T ss_pred HHhCcccHH
Confidence 987654333
No 74
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=2.9e-44 Score=414.91 Aligned_cols=213 Identities=27% Similarity=0.397 Sum_probs=186.0
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.|+++||+++|+. ..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+...+.. +++|
T Consensus 3 ~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 4899999999964 3699999999999999999999999999999999999999999999999999988765 4789
Q ss_pred EEEcCCCCCChh-hHHHHHHHH------------hhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEE
Q 040099 1090 GVVSQEPVLFSD-TIRANIAEM------------ANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKIL 1156 (1236)
Q Consensus 1090 ~~V~Qdp~LF~g-TIreNL~~~------------a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~IL 1156 (1236)
+||+|++.||+. ||+|||.-- ..+.+.++.+ |++........+||||||||++|||||+++|+||
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~--~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lL 155 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVF 155 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHT--TCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEE
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc--CCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999999976 999999511 1112222222 4555566777899999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCcccHH
Q 040099 1157 LLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIYTS 1229 (1236)
Q Consensus 1157 lLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~ 1229 (1236)
|||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||||+||++|+|++.|+|+++.+++...|..
T Consensus 156 LLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~~~~v~ 231 (381)
T 3rlf_A 156 LLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVA 231 (381)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHHH
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCccHHHH
Confidence 99999999999999999999988753 7899999999999865 9999999999999999999999876666654
No 75
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=2.6e-44 Score=396.55 Aligned_cols=207 Identities=25% Similarity=0.343 Sum_probs=184.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
++++||+|+ ++|+|+||+|++||+++|+||||||||||+++|+|+++|+ |+|.++|+++.+.+...+|++|+
T Consensus 5 l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 5 MQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 899999986 4899999999999999999999999999999999999999 99999999998888888889999
Q ss_pred EEccCCCCCch-hHHHHHhcCCC-CCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC
Q 040099 465 LVSQEPVLLSS-SIRDNIAYGKT-HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDP 542 (1236)
Q Consensus 465 ~v~Q~~~l~~~-ti~~ni~~g~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p 542 (1236)
||+|++.+|.. |++||+.++.. ..+.+++.++++..++.++ ....+.+||||||||++|||||+++|
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv~lAraL~~~p 145 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK-----------LGRSTNQLSGGEWQRVRLAAVVLQIT 145 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGG-----------TTSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 99999998875 99999999742 2235566677766655443 34456689999999999999999999
Q ss_pred C-------EEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHh-hcCeEEEEECCEEEEEeCcccccc
Q 040099 543 R-------ILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSELLE 610 (1236)
Q Consensus 543 ~-------ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l~~ 610 (1236)
+ +||||||||+||+.+++.+.+.|+++. +|+|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 146 ~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 146 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp TTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9 999999999999999999999999885 4889999999999985 599999999999999999999875
No 76
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=4.6e-44 Score=398.61 Aligned_cols=210 Identities=33% Similarity=0.516 Sum_probs=181.3
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeeccc----------
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQK---------- 1079 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~---------- 1079 (1236)
-|+++||+++|.. .++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++..
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 4899999999964 359999999999999999999999999999999999999999999999999862
Q ss_pred CCh---HHHhcceEEEcCCCCCChh-hHHHHHHHHh----h---------hchHHHhhhhchhhh-hcCCCCCCChhHHH
Q 040099 1080 LQV---KWLRQQMGVVSQEPVLFSD-TIRANIAEMA----N---------ANGFISGLQEGYDTL-VGERGVQLSGGQKQ 1141 (1236)
Q Consensus 1080 i~~---~~lR~~i~~V~Qdp~LF~g-TIreNL~~~a----~---------~~~~i~~lp~Gldt~-vge~G~~LSGGQrQ 1141 (1236)
++. ..+|++++||||++.+|.. |++||+.-.. + +.+.++.+ |++.. ......+|||||||
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~--~L~~~~~~~~~~~LSgGq~q 160 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKV--GIDERAQGKYPVHLSGGQQQ 160 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT--TCCHHHHTSCGGGSCHHHHH
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHc--CCCchhhcCCcccCCHHHHH
Confidence 443 3568899999999999877 9999995311 1 11122222 45555 56777899999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 040099 1142 RVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESL 1219 (1236)
Q Consensus 1142 RlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eL 1219 (1236)
|++|||||+.+|+|||||||||+||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 161 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 240 (262)
T 1b0u_A 161 RVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV 240 (262)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998874 47899999999999864 999999999999999999999
Q ss_pred hhccC
Q 040099 1220 ISTKN 1224 (1236)
Q Consensus 1220 l~~~~ 1224 (1236)
++.+.
T Consensus 241 ~~~~~ 245 (262)
T 1b0u_A 241 FGNPQ 245 (262)
T ss_dssp HHSCC
T ss_pred HhCcc
Confidence 87533
No 77
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=7e-44 Score=388.24 Aligned_cols=201 Identities=28% Similarity=0.417 Sum_probs=173.9
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHH---Hh
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKW---LR 1086 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~---lR 1086 (1236)
-|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+... +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 3899999999964 35999999999999999999999999999999999999999999999999998877543 44
Q ss_pred -cceEEEcCCCCCChh-hHHHHHHHHhh------------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccC
Q 040099 1087 -QQMGVVSQEPVLFSD-TIRANIAEMAN------------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKE 1152 (1236)
Q Consensus 1087 -~~i~~V~Qdp~LF~g-TIreNL~~~a~------------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~ 1152 (1236)
++|+||||+|.+|.. |++||+.-... +.+.++.+ |++........+||||||||++|||||+.+
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~laral~~~ 158 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSEL--GLGDKLSRKPYELSGGEQQRVAIARALANE 158 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT--TCTTCTTCCGGGSCHHHHHHHHHHHHTTTC
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 789999999998875 99999952111 11122221 444445566778999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhhcCEEEEEeCCEEEEecC
Q 040099 1153 PKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGS 1215 (1236)
Q Consensus 1153 p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt 1215 (1236)
|++||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+..||+|++|++|++++.|+
T Consensus 159 p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 159 PILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 99999999999999999999999998874 4789999999999987799999999999999986
No 78
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=7.7e-44 Score=396.26 Aligned_cols=204 Identities=20% Similarity=0.324 Sum_probs=178.3
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCCh-HHHhcc
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQV-KWLRQQ 1088 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~-~~lR~~ 1088 (1236)
-|+++||+++|++ .++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. ..+|++
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999964 359999999999999999999999999999999999999999999999999987764 456788
Q ss_pred eEEEcCCCCCCh-hhHHHHHHHHhhh-------------------------chHHHhhhhchhhhhcCCCCCCChhHHHH
Q 040099 1089 MGVVSQEPVLFS-DTIRANIAEMANA-------------------------NGFISGLQEGYDTLVGERGVQLSGGQKQR 1142 (1236)
Q Consensus 1089 i~~V~Qdp~LF~-gTIreNL~~~a~~-------------------------~~~i~~lp~Gldt~vge~G~~LSGGQrQR 1142 (1236)
|+||||+|.+|. .|++||+.-.... .++++.+ |++........+||||||||
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkQr 161 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL--KLSHLYDRKAGELSGGQMKL 161 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHT--TCGGGTTSBGGGSCHHHHHH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHc--CCchhhCCCchhCCHHHHHH
Confidence 999999999886 5999999521111 1111111 56656667778999999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhH
Q 040099 1143 VAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHES 1218 (1236)
Q Consensus 1143 laLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~e 1218 (1236)
++|||||+.+|+|||||||||+||+.+.+.+.+.|++.. +++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 162 v~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 162 VEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 999999999999999999999999999999999999875 4789999999999986 599999999999999999999
No 79
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2.4e-44 Score=398.61 Aligned_cols=208 Identities=26% Similarity=0.440 Sum_probs=171.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcC--CCCCCcEEEECCeecCCCCHHHH-hc
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRF--YDPQAGEVLIDGVNLKEFQLKWI-RE 461 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~--~~~~~G~i~~~g~~~~~~~~~~~-r~ 461 (1236)
|+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++.+.+.... +.
T Consensus 4 l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 4 LEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred EEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 899999999952 5699999999999999999999999999999999999 89999999999999988776654 45
Q ss_pred ceEEEccCCCCCch-hHHHHHhcCCC-----CCCH----HHHHHHHHHhccHHHHHhCCCCcc-ccccCCCCC-CChHHH
Q 040099 462 KIGLVSQEPVLLSS-SIRDNIAYGKT-----HATK----EEIQAAAEAANASHFIKNLPQGLD-TNVGEHGIQ-LSGGQK 529 (1236)
Q Consensus 462 ~i~~v~Q~~~l~~~-ti~~ni~~g~~-----~~~~----~~~~~~~~~~~~~~~i~~l~~g~~-t~~g~~g~~-LSgGqk 529 (1236)
.++||+|++.+|+. |++||+.++.. .... +++.++++.. |++ ........+ ||||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~~~LSgGqk 149 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELL-----------DWDESYLSRYLNEGFSGGEK 149 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH-----------TCCGGGGGSBTTCC----HH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHc-----------CCChhHhcCCcccCCCHHHH
Confidence 69999999999876 99999987521 1121 2233333333 342 223334456 999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh--cCeEEEEECCEEEEEeCcc
Q 040099 530 QRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN--ANIIAVIQQGKIVEKGTHS 606 (1236)
Q Consensus 530 qRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~--ad~i~vl~~G~i~~~g~~~ 606 (1236)
||++|||||+++|++||||||||+||+.+++.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 150 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 150 KRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 99999999999999999999999999999999999999985 47899999999999876 5999999999999999987
No 80
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.1e-43 Score=407.27 Aligned_cols=212 Identities=34% Similarity=0.479 Sum_probs=183.0
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.|+++||+++|.+ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.|+.+.+.. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 3899999999963 3599999999999999999999999999999999999999999999999999887754 5789
Q ss_pred EEEcCCCCCChh-hHHHHHHHHh------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEE
Q 040099 1090 GVVSQEPVLFSD-TIRANIAEMA------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKIL 1156 (1236)
Q Consensus 1090 ~~V~Qdp~LF~g-TIreNL~~~a------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~IL 1156 (1236)
+||||++.+|.. |++||+.-.. .+.+.++.+ |++........+||||||||+||||||+++|++|
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lL 155 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKML--HIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVL 155 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT--TCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc--CCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999999976 9999995211 111222222 4544455667799999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhccCcccH
Q 040099 1157 LLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLISTKNGIYT 1228 (1236)
Q Consensus 1157 lLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~ 1228 (1236)
|||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|+||++|+|++.|+|+++++++...|.
T Consensus 156 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~~ 230 (362)
T 2it1_A 156 LLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKFV 230 (362)
T ss_dssp EEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHH
T ss_pred EEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchHH
Confidence 99999999999999999999988753 789999999999985 4999999999999999999999987554443
No 81
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=2.4e-43 Score=406.35 Aligned_cols=212 Identities=30% Similarity=0.494 Sum_probs=183.7
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.|+++||+++|.+ ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++...+.. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 3899999999963 3589999999999999999999999999999999999999999999999999887754 6789
Q ss_pred EEEcCCCCCChh-hHHHHHHHHh------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEE
Q 040099 1090 GVVSQEPVLFSD-TIRANIAEMA------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKIL 1156 (1236)
Q Consensus 1090 ~~V~Qdp~LF~g-TIreNL~~~a------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~IL 1156 (1236)
+||||++.+|.. |++||+.-.. .+.+.++.+ |++........+||||||||+||||||+++|++|
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~--~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lL 155 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKL--LIDNLLDRKPTQLSGGQQQRVALARALVKQPKVL 155 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999999976 9999996111 112222222 4555556677899999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhccCcccH
Q 040099 1157 LLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLISTKNGIYT 1228 (1236)
Q Consensus 1157 lLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~ 1228 (1236)
|||||||+||+.+...+++.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+|+++++++...|.
T Consensus 156 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~ 230 (359)
T 2yyz_A 156 LFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFV 230 (359)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHH
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHHH
Confidence 99999999999999999999988753 789999999999985 4999999999999999999999987555443
No 82
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=3.1e-43 Score=404.29 Aligned_cols=213 Identities=27% Similarity=0.452 Sum_probs=183.4
Q ss_pred ccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcc
Q 040099 1009 GEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQ 1088 (1236)
Q Consensus 1009 g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~ 1088 (1236)
..|+++||+++|++ +.++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++...+. .|++
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 36999999999942 2358999999999999999999999999999999999999999999999999987654 4788
Q ss_pred eEEEcCCCCCChh-hHHHHHHHHh------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCE
Q 040099 1089 MGVVSQEPVLFSD-TIRANIAEMA------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKI 1155 (1236)
Q Consensus 1089 i~~V~Qdp~LF~g-TIreNL~~~a------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~I 1155 (1236)
|+||+|++.+|.. |++||+.-.. .+.+.++.+ |++........+||||||||+||||||+++|++
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~--gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~l 166 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFM--RLESYANRFPHELSGGQQQRVALARALAPRPQV 166 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc--CChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 9999999999976 9999995211 111222222 455555666789999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCccc
Q 040099 1156 LLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIY 1227 (1236)
Q Consensus 1156 LlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y 1227 (1236)
||||||||+||+.+...+++.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+|+++++++...|
T Consensus 167 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~ 241 (355)
T 1z47_A 167 LLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLF 241 (355)
T ss_dssp EEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHH
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchH
Confidence 999999999999999999999988753 7899999999999865 99999999999999999999998755444
No 83
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2.6e-43 Score=393.63 Aligned_cols=216 Identities=25% Similarity=0.365 Sum_probs=179.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcC--CCCCCcEEEECCeecCCCCHHHH-h
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRF--YDPQAGEVLIDGVNLKEFQLKWI-R 460 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~--~~~~~G~i~~~g~~~~~~~~~~~-r 460 (1236)
-|+++||+|+|+ ++++|+||||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+.... +
T Consensus 20 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 599999999995 35799999999999999999999999999999999999 57999999999999988776655 4
Q ss_pred cceEEEccCCCCCch-hHHHHHhcCC---------CCCCHHHHHHHHHHhccHHHHHhCCCCccc-cccCCCC-CCChHH
Q 040099 461 EKIGLVSQEPVLLSS-SIRDNIAYGK---------THATKEEIQAAAEAANASHFIKNLPQGLDT-NVGEHGI-QLSGGQ 528 (1236)
Q Consensus 461 ~~i~~v~Q~~~l~~~-ti~~ni~~g~---------~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~g~~g~-~LSgGq 528 (1236)
..|+||+|++.+|+. |++||+.++. +..+.++..+ .+.+.++.+ |+++ ....... +|||||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~LSgGq 169 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQD-----LMEEKIALL--KMPEDLLTRSVNVGFSGGE 169 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHH-----HHHHHHHHT--TCCTTTTTSBTTTTCCHHH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHH-----HHHHHHHHc--CCChhHhcCCcccCCCHHH
Confidence 569999999998876 9999997532 1122222211 122333333 5543 2333444 599999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh--cCeEEEEECCEEEEEeCc
Q 040099 529 KQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN--ANIIAVIQQGKIVEKGTH 605 (1236)
Q Consensus 529 kqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~--ad~i~vl~~G~i~~~g~~ 605 (1236)
|||++|||||+.+|+|||||||||+||+.+++.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 170 ~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 249 (267)
T 2zu0_C 170 KKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 249 (267)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECT
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCH
Confidence 999999999999999999999999999999999999999885 47899999999999875 899999999999999998
Q ss_pred cccc
Q 040099 606 SELL 609 (1236)
Q Consensus 606 ~~l~ 609 (1236)
+++.
T Consensus 250 ~~~~ 253 (267)
T 2zu0_C 250 TLVK 253 (267)
T ss_dssp THHH
T ss_pred HHHh
Confidence 8764
No 84
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.2e-43 Score=399.35 Aligned_cols=203 Identities=27% Similarity=0.473 Sum_probs=166.5
Q ss_pred cccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhc
Q 040099 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087 (1236)
Q Consensus 1008 ~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~ 1087 (1236)
.+.|+++||+|.| .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||
T Consensus 38 ~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g------------- 99 (290)
T 2bbs_A 38 DDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99 (290)
T ss_dssp ------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------
T ss_pred CceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------
Confidence 3569999999964 2589999999999999999999999999999999999999999999998
Q ss_pred ceEEEcCCCCCChhhHHHHHH-------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC
Q 040099 1088 QMGVVSQEPVLFSDTIRANIA-------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1088 ~i~~V~Qdp~LF~gTIreNL~-------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
+|+||||+|.+|++|++||+. +..++.+++..+|.++++.+++.+.+||||||||++|||||+++|+
T Consensus 100 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~ 179 (290)
T 2bbs_A 100 RISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 179 (290)
T ss_dssp CEEEECSSCCCCSSBHHHHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCS
T ss_pred EEEEEeCCCccCcccHHHHhhCcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCC
Confidence 499999999999999999985 1123344566778888899999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHH-HHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHH
Q 040099 1155 ILLLDEATSALDIESERVVQDAL-DQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTS 1229 (1236)
Q Consensus 1155 ILlLDEaTSaLD~~te~~I~~~L-~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~ 1229 (1236)
+||||||||+||+.++..+.+.+ ++..+++|+|+|||+++.+..||+|++|++|++++.|+|+++++. ...|.+
T Consensus 180 lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~ 254 (290)
T 2bbs_A 180 LYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL-RPDFSS 254 (290)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHH-CHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhh-cHHHHH
Confidence 99999999999999999999874 444568999999999999988999999999999999999999864 344443
No 85
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2.2e-43 Score=387.27 Aligned_cols=203 Identities=33% Similarity=0.488 Sum_probs=175.9
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
|+++||+++|+. +|+|+||+|++ |++||+||||||||||+++|.|+++|++|+|.+||.++.+.+ ..|++|+
T Consensus 2 l~~~~l~~~y~~-----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLGN-----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEETT-----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeCC-----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 689999999952 49999999999 999999999999999999999999999999999999997643 3578899
Q ss_pred EEcCCCCCChh-hHHHHHHHHh----------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 040099 1091 VVSQEPVLFSD-TIRANIAEMA----------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLD 1159 (1236)
Q Consensus 1091 ~V~Qdp~LF~g-TIreNL~~~a----------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLD 1159 (1236)
||||+|.+|.. |++||+.-.. .+.+.++.+ |++........+||||||||++|||||+++|++||||
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD 151 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLD 151 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEE
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHc--CCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 99999999987 9999995211 111222222 4444455667789999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcc
Q 040099 1160 EATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTK 1223 (1236)
Q Consensus 1160 EaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~ 1223 (1236)
||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++++++
T Consensus 152 EPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 152 EPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp STTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 99999999999999999998753 7899999999998854 9999999999999999999998764
No 86
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.5e-43 Score=397.21 Aligned_cols=208 Identities=25% Similarity=0.389 Sum_probs=179.9
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecc--cCChHHHhc
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQ--KLQVKWLRQ 1087 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~--~i~~~~lR~ 1087 (1236)
-|+++||+++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++. ..+...+|+
T Consensus 21 ~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred eEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 5999999999964 35999999999999999999999999999999999999999999999999998 777788899
Q ss_pred ceEEEcCCCCC-Chh--hHHHHHHHHh----------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHH
Q 040099 1088 QMGVVSQEPVL-FSD--TIRANIAEMA----------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARA 1148 (1236)
Q Consensus 1088 ~i~~V~Qdp~L-F~g--TIreNL~~~a----------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARA 1148 (1236)
+|+||||+|.+ |.. |++||+.-.. .+.+.++.+ |++........+||||||||++||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LSgGqkqRv~lAra 175 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLV--GMSAKAQQYIGYLSTGEKQRVMIARA 175 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHH
Confidence 99999999864 554 9999995210 011112211 45555566778999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC-CCeE--EEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 040099 1149 IVKEPKILLLDEATSALDIESERVVQDALDQVMV-DRTT--LVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1149 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~-~~Tv--I~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+ |+|||+++.+. .||+|++|++|++++.|+++++++.
T Consensus 176 L~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 253 (279)
T 2ihy_A 176 LMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTS 253 (279)
T ss_dssp HHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHCSH
T ss_pred HhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcc
Confidence 9999999999999999999999999999988753 7899 99999999985 5999999999999999999998754
No 87
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=3.7e-43 Score=403.69 Aligned_cols=210 Identities=30% Similarity=0.463 Sum_probs=181.9
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
|+++||+++|.+ . +|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.+. .|++|+
T Consensus 2 l~~~~l~~~y~~---~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWKN---F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECSS---C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEECC---E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 689999999953 4 8999999999999999999999999999999999999999999999999987654 478899
Q ss_pred EEcCCCCCChh-hHHHHHHHHh---------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 040099 1091 VVSQEPVLFSD-TIRANIAEMA---------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDE 1160 (1236)
Q Consensus 1091 ~V~Qdp~LF~g-TIreNL~~~a---------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDE 1160 (1236)
||||++.+|+. |++||+.-.. .+.+.++.+ |++........+||||||||+||||||+++|++|||||
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~--~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDE 153 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL--KIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDE 153 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHT--TCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEES
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 99999999986 9999996211 112222222 45444556677999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhccCcccH
Q 040099 1161 ATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLISTKNGIYT 1228 (1236)
Q Consensus 1161 aTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~ 1228 (1236)
|||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+|+++++++...|.
T Consensus 154 P~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~~ 224 (348)
T 3d31_A 154 PLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRV 224 (348)
T ss_dssp SSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHHH
Confidence 9999999999999999998743 789999999999885 4999999999999999999999987555553
No 88
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=6.2e-43 Score=390.70 Aligned_cols=207 Identities=27% Similarity=0.479 Sum_probs=178.9
Q ss_pred EEEeEEEEECCCCCC--cccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcc
Q 040099 1011 VQFLRVSFKYPTRPH--IEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQ 1088 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~--~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~ 1088 (1236)
|+++||+++|+.... .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++... .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 789999999962111 3699999999999999999999999999999999999999999999999998653 67889
Q ss_pred eEEEcCCC--CCChhhHHHHHHHHhh-----------hchHHHhhhhchh--hhhcCCCCCCChhHHHHHHHHHHHccCC
Q 040099 1089 MGVVSQEP--VLFSDTIRANIAEMAN-----------ANGFISGLQEGYD--TLVGERGVQLSGGQKQRVAIARAIVKEP 1153 (1236)
Q Consensus 1089 i~~V~Qdp--~LF~gTIreNL~~~a~-----------~~~~i~~lp~Gld--t~vge~G~~LSGGQrQRlaLARALlr~p 1153 (1236)
|+||||+| .++..|++||+.-... +.+.++.+ |++ ........+||||||||++|||||+++|
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p 157 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFV--GLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEP 157 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHT--TCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHc--CcCCcccccCChhhCCHHHHHHHHHHHHHHcCC
Confidence 99999997 5778899999963211 11122211 555 4556667899999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1154 KILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1154 ~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
+|||||||||+||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 158 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 158 DILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999874 57899999999999976 999999999999999999999875
No 89
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=5.3e-43 Score=405.39 Aligned_cols=212 Identities=29% Similarity=0.442 Sum_probs=179.0
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.|+++||+++|.+ ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++...+.. +++|
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 4999999999963 3589999999999999999999999999999999999999999999999999887754 5789
Q ss_pred EEEcCCCCCChh-hHHHHHHHH------------hhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEE
Q 040099 1090 GVVSQEPVLFSD-TIRANIAEM------------ANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKIL 1156 (1236)
Q Consensus 1090 ~~V~Qdp~LF~g-TIreNL~~~------------a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~IL 1156 (1236)
+||||++.+|.. |++||+.-. ..+.+.++.+ |++........+||||||||+||||||+++|++|
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lL 163 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVL 163 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEE
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999975 999999510 1122223322 5555566778899999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhccCcccH
Q 040099 1157 LLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLISTKNGIYT 1228 (1236)
Q Consensus 1157 lLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~ 1228 (1236)
|||||||+||+.+...+++.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+|+++++++...|.
T Consensus 164 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~ 238 (372)
T 1v43_A 164 LMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFV 238 (372)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHH
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHHH
Confidence 99999999999999999999988753 789999999999985 5999999999999999999999987555553
No 90
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.8e-43 Score=392.70 Aligned_cols=208 Identities=20% Similarity=0.319 Sum_probs=179.8
Q ss_pred EEEEeEEEECCCC-CCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 385 IELKDVNFSYPAR-PDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 385 i~~~~v~f~y~~~-~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
|+++|++++|++. ..+++|+|+||+|+ ||+++|+||||||||||+++|+|++ |++|+|.++|+++.+. .. |++|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999631 01469999999999 9999999999999999999999999 9999999999998754 23 6789
Q ss_pred E-EEccCCCCCchhHHHHHhcCCC--CCCHHHHHHHHHHhccHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHHHHHhc
Q 040099 464 G-LVSQEPVLLSSSIRDNIAYGKT--HATKEEIQAAAEAANASHFIKNLPQGLD-TNVGEHGIQLSGGQKQRVAIARAMI 539 (1236)
Q Consensus 464 ~-~v~Q~~~l~~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~g~~g~~LSgGqkqRiaiARal~ 539 (1236)
+ ||+|++.+ +.|++||+.++.+ ...++++.++++.. |++ ...+.++.+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKAL-----------KLGEEILRRKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHT-----------TCCGGGGGSBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHc-----------CCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9 99999998 8899999998532 23445555555544 454 5566667799999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHh-hcC-eEEEEECCEEEEEeCccccccc
Q 040099 540 KDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIR-NAN-IIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 540 ~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~ad-~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
.+|++||||||||+||+.+++.+.+.|+++.+ |+|++||+++.+. .|| ++++|++|++++.|+++++.+.
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 99999999999999999999999999998754 9999999999986 599 9999999999999999988653
No 91
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=4e-43 Score=388.84 Aligned_cols=220 Identities=26% Similarity=0.366 Sum_probs=175.2
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcc--cCCCCcEEEECCeecccCChHHH-hc
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRF--YDPSSGHITLDGVEIQKLQVKWL-RQ 1087 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~--~~~~~G~I~idG~di~~i~~~~l-R~ 1087 (1236)
|+++||+++|+. .++|+|+||+|++||++||+||||||||||+++|.|+ ++|++|+|.+||.|+...+.... |+
T Consensus 4 l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 4 LEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred EEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 789999999964 3599999999999999999999999999999999999 89999999999999988876655 55
Q ss_pred ceEEEcCCCCCChh-hHHHHHHHHh----hh----chHHHhhhh-----chh-hhhcCCCCC-CChhHHHHHHHHHHHcc
Q 040099 1088 QMGVVSQEPVLFSD-TIRANIAEMA----NA----NGFISGLQE-----GYD-TLVGERGVQ-LSGGQKQRVAIARAIVK 1151 (1236)
Q Consensus 1088 ~i~~V~Qdp~LF~g-TIreNL~~~a----~~----~~~i~~lp~-----Gld-t~vge~G~~-LSGGQrQRlaLARALlr 1151 (1236)
.++||||+|.+|.+ |++||+.-.. +. .+.....++ |++ ........+ ||||||||++|||||++
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~ 160 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVL 160 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHc
Confidence 69999999999886 9999985211 10 111112222 453 233444456 99999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh--cCEEEEEeCCEEEEecChhHHhhccCcccH
Q 040099 1152 EPKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN--AHLIAVVSQGMIVEKGSHESLISTKNGIYT 1228 (1236)
Q Consensus 1152 ~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~--aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~ 1228 (1236)
+|+|||||||||+||+.+...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++.........|.
T Consensus 161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~ 240 (250)
T 2d2e_A 161 EPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELEAKGYE 240 (250)
T ss_dssp CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHHHHHHHHHCHH
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHHHHHHHHHHHH
Confidence 999999999999999999999999999875 47899999999999976 599999999999999999833221122366
Q ss_pred Hhhhc
Q 040099 1229 SLIEP 1233 (1236)
Q Consensus 1229 ~L~~~ 1233 (1236)
.+.+.
T Consensus 241 ~~~~~ 245 (250)
T 2d2e_A 241 WLKEK 245 (250)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 65543
No 92
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=6.7e-43 Score=390.31 Aligned_cols=220 Identities=24% Similarity=0.340 Sum_probs=180.4
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcc--cCCCCcEEEECCeecccCChHHH-h
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRF--YDPSSGHITLDGVEIQKLQVKWL-R 1086 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~--~~~~~G~I~idG~di~~i~~~~l-R 1086 (1236)
-|+++||+++|.+ .++|+|+||+|++||++||+||||||||||+++|.|+ ++|++|+|.+||.|+...+.... |
T Consensus 20 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVED---KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 5999999999963 3699999999999999999999999999999999999 57899999999999988877665 4
Q ss_pred cceEEEcCCCCCChh-hHHHHHHHHh-hh--------------chHHHhhh--hchhhhh-cCCCC-CCChhHHHHHHHH
Q 040099 1087 QQMGVVSQEPVLFSD-TIRANIAEMA-NA--------------NGFISGLQ--EGYDTLV-GERGV-QLSGGQKQRVAIA 1146 (1236)
Q Consensus 1087 ~~i~~V~Qdp~LF~g-TIreNL~~~a-~~--------------~~~i~~lp--~Gldt~v-ge~G~-~LSGGQrQRlaLA 1146 (1236)
+.++||||+|.+|.+ |++||+.... .. .+.+..+- -|+++.. ..... +||||||||++||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iA 176 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDIL 176 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHH
Confidence 569999999999876 8999985211 00 00111111 1444322 33333 5999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh--cCEEEEEeCCEEEEecChhHHhhcc
Q 040099 1147 RAIVKEPKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN--AHLIAVVSQGMIVEKGSHESLISTK 1223 (1236)
Q Consensus 1147 RALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~--aD~I~Vl~~G~Ive~Gt~~eLl~~~ 1223 (1236)
|||+++|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++...+
T Consensus 177 raL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 256 (267)
T 2zu0_C 177 QMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLE 256 (267)
T ss_dssp HHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHHHHHH
T ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHHhhhh
Confidence 99999999999999999999999999999999875 47899999999999875 8999999999999999999875443
Q ss_pred CcccHHhhh
Q 040099 1224 NGIYTSLIE 1232 (1236)
Q Consensus 1224 ~g~y~~L~~ 1232 (1236)
...|..+.+
T Consensus 257 ~~~~~~~~~ 265 (267)
T 2zu0_C 257 EQGYGWLTE 265 (267)
T ss_dssp TTTCTTSSC
T ss_pred hcchhhhhh
Confidence 333654443
No 93
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=9.4e-43 Score=404.39 Aligned_cols=212 Identities=27% Similarity=0.451 Sum_probs=182.8
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeeccc------CChH
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQK------LQVK 1083 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~------i~~~ 1083 (1236)
.|+++||+++|.+ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+ .+..
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (372)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh
Confidence 3899999999963 359999999999999999999999999999999999999999999999999976 5543
Q ss_pred HHhcceEEEcCCCCCChh-hHHHHHHHHh------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHc
Q 040099 1084 WLRQQMGVVSQEPVLFSD-TIRANIAEMA------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIV 1150 (1236)
Q Consensus 1084 ~lR~~i~~V~Qdp~LF~g-TIreNL~~~a------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALl 1150 (1236)
+++|+||||++.+|.. |++||+.-.. .+.+.++.+ |++........+||||||||+||||||+
T Consensus 80 --~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~ 155 (372)
T 1g29_1 80 --DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELL--GLTELLNRKPRELSGGQRQRVALGRAIV 155 (372)
T ss_dssp --GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH--TCGGGTTCCGGGSCHHHHHHHHHHHHHH
T ss_pred --HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC--CCchHhcCCcccCCHHHHHHHHHHHHHh
Confidence 6789999999999975 9999995211 112222222 4555556677899999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCccc
Q 040099 1151 KEPKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIY 1227 (1236)
Q Consensus 1151 r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y 1227 (1236)
++|++||||||||+||+.+...+++.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+|+++++++...|
T Consensus 156 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~ 235 (372)
T 1g29_1 156 RKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTF 235 (372)
T ss_dssp TCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHH
T ss_pred cCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhCcccHH
Confidence 99999999999999999999999999988753 7899999999999864 99999999999999999999998755555
Q ss_pred H
Q 040099 1228 T 1228 (1236)
Q Consensus 1228 ~ 1228 (1236)
.
T Consensus 236 ~ 236 (372)
T 1g29_1 236 V 236 (372)
T ss_dssp H
T ss_pred H
Confidence 3
No 94
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=3.1e-43 Score=389.55 Aligned_cols=201 Identities=26% Similarity=0.385 Sum_probs=172.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
-|+++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++++|
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSI 68 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCE
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccE
Confidence 3899999999951 24699999999999999999999999999999999999999999998 25689
Q ss_pred EEEccCCCCC-chhHHHHHhcCCCC-------CC---HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 040099 464 GLVSQEPVLL-SSSIRDNIAYGKTH-------AT---KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRV 532 (1236)
Q Consensus 464 ~~v~Q~~~l~-~~ti~~ni~~g~~~-------~~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRi 532 (1236)
+||||++.+| ..|++||+.++... .. .+++.++++..++. ......+.+||||||||+
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv 137 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLT-----------HLAKREFTSLSGGQRQLI 137 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCG-----------GGTTSBGGGSCHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCCh-----------HHhcCChhhCCHHHHHHH
Confidence 9999999887 56999999986421 11 23344555555443 334455678999999999
Q ss_pred HHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHh-hcCeEEEEECCEEEEEeCccccc
Q 040099 533 AIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSELL 609 (1236)
Q Consensus 533 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l~ 609 (1236)
+|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ |+|+|++||+++.+. .||++++|++|+ ++.|+++++.
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp HHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 999999999999999999999999999999999998854 789999999999985 599999999999 9999999987
Q ss_pred cc
Q 040099 610 EN 611 (1236)
Q Consensus 610 ~~ 611 (1236)
..
T Consensus 217 ~~ 218 (253)
T 2nq2_C 217 TS 218 (253)
T ss_dssp CH
T ss_pred Cc
Confidence 53
No 95
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=4.4e-43 Score=404.81 Aligned_cols=213 Identities=29% Similarity=0.385 Sum_probs=182.2
Q ss_pred cEEEeEEEEECCCCCCcc--cccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCC---hHH
Q 040099 1010 EVQFLRVSFKYPTRPHIE--VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ---VKW 1084 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~--vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~---~~~ 1084 (1236)
.|+++||+++|.+ .+ +|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+.+.+ ...
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 3899999999963 35 899999999999999999999999999999999999999999999999997621 233
Q ss_pred HhcceEEEcCCCCCChh-hHHHHHHHHh------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHcc
Q 040099 1085 LRQQMGVVSQEPVLFSD-TIRANIAEMA------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVK 1151 (1236)
Q Consensus 1085 lR~~i~~V~Qdp~LF~g-TIreNL~~~a------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr 1151 (1236)
.|++|+||||++.+|.. |++||+.-.. .+.+.++.+ |++........+||||||||++|||||++
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~--~L~~~~~~~~~~LSGGq~QRvalAraL~~ 157 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKIL--DIHHVLNHFPRELSGAQQQRVALARALVK 157 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 57899999999999986 9999995111 112222222 45555556677999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCccc
Q 040099 1152 EPKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIY 1227 (1236)
Q Consensus 1152 ~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y 1227 (1236)
+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+|+++++++...|
T Consensus 158 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~ 236 (353)
T 1oxx_K 158 DPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQ 236 (353)
T ss_dssp CCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHH
Confidence 9999999999999999999999999988753 7899999999999865 99999999999999999999998755444
No 96
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.2e-42 Score=383.21 Aligned_cols=201 Identities=23% Similarity=0.343 Sum_probs=178.8
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
++++||+++ ++|+|+||+|++||++||+||||||||||+++|.|+++|+ |+|.+||.++.+.+...+|++++
T Consensus 5 l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 5 MQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 789999986 3899999999999999999999999999999999999999 99999999999888889999999
Q ss_pred EEcCCCCCChh-hHHHHHHHHh-------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC-------E
Q 040099 1091 VVSQEPVLFSD-TIRANIAEMA-------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK-------I 1155 (1236)
Q Consensus 1091 ~V~Qdp~LF~g-TIreNL~~~a-------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~-------I 1155 (1236)
||||+|.+|.+ |++||+.-.. .+.+.++.+ |++........+||||||||++|||||+++|+ +
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~l 154 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL--ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQL 154 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHT--TCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCE
T ss_pred EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeE
Confidence 99999998876 9999995211 111222221 55555667778999999999999999999999 9
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhh
Q 040099 1156 LLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLIS 1221 (1236)
Q Consensus 1156 LlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~ 1221 (1236)
||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+++++++
T Consensus 155 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 155 LLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp EEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999874 5789999999999985 599999999999999999999976
No 97
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.9e-42 Score=381.90 Aligned_cols=202 Identities=18% Similarity=0.298 Sum_probs=176.6
Q ss_pred EEEeEEEEECCCC-CCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1011 VQFLRVSFKYPTR-PHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~-~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
|+++||+++|+.. ...++|+|+||+|+ ||++||+||||||||||+++|.|++ |++|+|.++|.++.+. .. |+++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 6899999999641 01359999999999 9999999999999999999999999 9999999999999765 33 7899
Q ss_pred E-EEcCCCCCChhhHHHHHHHHhh--------hchHHHhhhhchh-hhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 040099 1090 G-VVSQEPVLFSDTIRANIAEMAN--------ANGFISGLQEGYD-TLVGERGVQLSGGQKQRVAIARAIVKEPKILLLD 1159 (1236)
Q Consensus 1090 ~-~V~Qdp~LF~gTIreNL~~~a~--------~~~~i~~lp~Gld-t~vge~G~~LSGGQrQRlaLARALlr~p~ILlLD 1159 (1236)
+ ||||+|.+ ..|++||+.-... +.+.++.+ |++ ...+....+||||||||++|||||+++|++||||
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLD 153 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKAL--KLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLD 153 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHT--TCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHc--CCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 9 99999998 8899999963221 22333333 666 6677888899999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-hcC-EEEEEeCCEEEEecChhHHhhc
Q 040099 1160 EATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIK-NAH-LIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1160 EaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~-~aD-~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
||||+||+.+.+.+.+.|++..+ |+|+|||+++.+. .|| +|++|++|++++.|+++++.+.
T Consensus 154 EPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 154 EPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp CTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred CCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 99999999999999999998754 9999999999985 599 9999999999999999999854
No 98
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.2e-42 Score=371.88 Aligned_cols=194 Identities=23% Similarity=0.381 Sum_probs=165.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.|+++||+++|+ + ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|
T Consensus 10 ~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 599999999995 3 6999999999999999999999999999999999999999999999999886 257889
Q ss_pred EEEccCCCCCch-hHHHHHhcCCC----CCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 040099 464 GLVSQEPVLLSS-SIRDNIAYGKT----HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAM 538 (1236)
Q Consensus 464 ~~v~Q~~~l~~~-ti~~ni~~g~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal 538 (1236)
+||+|++.+|.. |++||+.++.. ....+++.++++.. |++.. +..+.+||||||||++|||||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~-~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV-----------EVLDL-KKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHT-----------TCCCT-TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHc-----------CCCcC-CCChhhCCHHHHHHHHHHHHH
Confidence 999999999876 99999988521 12244555555444 45555 666789999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEE
Q 040099 539 IKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKI 599 (1236)
Q Consensus 539 ~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i 599 (1236)
+.+|++||||||||+||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|+ +.+|+|
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~ 210 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKI 210 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC--
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCcc
Confidence 99999999999999999999999999998875 47899999999999877 67765 456665
No 99
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=3.3e-41 Score=373.33 Aligned_cols=197 Identities=26% Similarity=0.369 Sum_probs=168.4
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
-|+++||+++|+. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|. +|++|
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSI 68 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCE
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccE
Confidence 3899999999962 13599999999999999999999999999999999999999999998 36789
Q ss_pred EEEcCCCCCC-hhhHHHHHHHHhhh--------c----hHHHh-hh-hchhhhhcCCCCCCChhHHHHHHHHHHHccCCC
Q 040099 1090 GVVSQEPVLF-SDTIRANIAEMANA--------N----GFISG-LQ-EGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1090 ~~V~Qdp~LF-~gTIreNL~~~a~~--------~----~~i~~-lp-~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
+||||+|.+| ..|++||+.-.... . +.+.. +. -|++........+||||||||++|||||+++|+
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 148 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECK 148 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCS
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 9999999887 56999999621100 0 11111 11 155555666778999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 040099 1155 ILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1155 ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|||||||||+||+.+...+.+.|++..+ ++|+|+|||+++.+. .||+|++|++|+ ++.|+++++++.
T Consensus 149 lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~~ 218 (253)
T 2nq2_C 149 LILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILTS 218 (253)
T ss_dssp EEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCCH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhCc
Confidence 9999999999999999999999998753 789999999999985 599999999999 999999998753
No 100
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=6.7e-41 Score=360.38 Aligned_cols=188 Identities=18% Similarity=0.327 Sum_probs=161.5
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.|+++||+++|++ ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++. .+|+++
T Consensus 10 ~l~~~~ls~~y~~----~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYDK----PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESSS----EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeCC----eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 6999999999963 5999999999999999999999999999999999999999999999999986 368899
Q ss_pred EEEcCCCCCChh-hHHHHHHHHhh----------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 040099 1090 GVVSQEPVLFSD-TIRANIAEMAN----------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLL 1158 (1236)
Q Consensus 1090 ~~V~Qdp~LF~g-TIreNL~~~a~----------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlL 1158 (1236)
+||||+|.+|.+ |++||+.-... +.+.++.+ |++.. +..+.+||||||||++|||||+++|++|||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~--gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllL 157 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV--EVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVL 157 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHT--TCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHc--CCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999987 99999953211 11222222 56665 677889999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 040099 1159 DEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMI 1210 (1236)
Q Consensus 1159 DEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~I 1210 (1236)
|||||+||+.+...+.+.|++.. +++|+|++||+++.+.. ||+|+ +.+|+|
T Consensus 158 DEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~ 210 (214)
T 1sgw_A 158 DDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKI 210 (214)
T ss_dssp ESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC--
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCcc
Confidence 99999999999999999998875 47899999999999987 56655 556776
No 101
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=100.00 E-value=6.2e-38 Score=385.20 Aligned_cols=168 Identities=14% Similarity=0.066 Sum_probs=123.9
Q ss_pred EEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEE
Q 040099 1012 QFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGV 1091 (1236)
Q Consensus 1012 ~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1091 (1236)
+.+++++.|+.- ..+|++ .|++|+.++|+|+||||||||++.+++...|. |. +.+.+
T Consensus 259 ~~~~l~~g~~~l--d~vL~g---~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~ 315 (525)
T 1tf7_A 259 SNVRVSSGVVRL--DEMCGG---GFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILF 315 (525)
T ss_dssp CCCEECCSCHHH--HHHTTS---SEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEE
T ss_pred ccceeecChHHH--HHHhCC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEE
Confidence 455677666420 124444 99999999999999999999999999998875 53 12456
Q ss_pred EcCCCCCChhhHHHHHHHHhhhchHHHhh-hhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHH--
Q 040099 1092 VSQEPVLFSDTIRANIAEMANANGFISGL-QEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIE-- 1168 (1236)
Q Consensus 1092 V~Qdp~LF~gTIreNL~~~a~~~~~i~~l-p~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~-- 1168 (1236)
++||+. .++++|... .+.. +..+ ..|+..........|||||+||+++||++..+|++||+| ||++||..
T Consensus 316 ~~ee~~---~~l~~~~~~-~g~~--~~~~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~ 388 (525)
T 1tf7_A 316 AYEESR---AQLLRNAYS-WGMD--FEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVS 388 (525)
T ss_dssp ESSSCH---HHHHHHHHT-TSCC--HHHHHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSC
T ss_pred EEeCCH---HHHHHHHHH-cCCC--HHHHHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCC
Confidence 677762 355555421 1111 0111 123333334455679999999999999999999999999 99999999
Q ss_pred ---HHHHHHHHHHHHc-CCCeEEEEecCc----------hhhhh-cCEEEEEeCCE
Q 040099 1169 ---SERVVQDALDQVM-VDRTTLVVAHRL----------STIKN-AHLIAVVSQGM 1209 (1236)
Q Consensus 1169 ---te~~I~~~L~~~~-~~~TvI~IaHRl----------~ti~~-aD~I~Vl~~G~ 1209 (1236)
..+.+.+.++.+. .++|+|+|+|.. ..+.. ||+|++|++|+
T Consensus 389 ~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 389 NNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 8888888887654 478999999998 66654 99999999886
No 102
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=1.1e-39 Score=367.13 Aligned_cols=240 Identities=17% Similarity=0.196 Sum_probs=198.0
Q ss_pred HHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccCCCCCCCCCCcEEEEeEEEE
Q 040099 314 ILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFS 393 (1236)
Q Consensus 314 v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~ 393 (1236)
...+..+-+.+.+|+.+..+ ..|+.+++..+..++++.++.+|+.++++.+++..... ...+...+.|+++||+|+
T Consensus 35 ~a~~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~---~~~~~~~~~i~~~~vs~~ 110 (305)
T 2v9p_A 35 YALAAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGE---GSWKSILTFFNYQNIELI 110 (305)
T ss_dssp HHHTTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS---CCTHHHHHHHHHTTCCHH
T ss_pred HHHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC---CcccccCCeEEEEEEEEE
Confidence 34556677888888877656 57899999999999999999999999998755432111 111112245899999999
Q ss_pred CCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCC
Q 040099 394 YPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLL 473 (1236)
Q Consensus 394 y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~ 473 (1236)
|+ .++|+|+||+|++|++++|+||||||||||+++|+|++ +|+| ++|++|++++|
T Consensus 111 y~----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf 165 (305)
T 2v9p_A 111 TF----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFW 165 (305)
T ss_dssp HH----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGG
T ss_pred cC----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccc
Confidence 95 36999999999999999999999999999999999999 8988 46789999999
Q ss_pred chhHHH-HHhcCCCCCCHHHHHHHHHHhccHHHHHh-CCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcC
Q 040099 474 SSSIRD-NIAYGKTHATKEEIQAAAEAANASHFIKN-LPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEAT 551 (1236)
Q Consensus 474 ~~ti~~-ni~~g~~~~~~~~~~~~~~~~~~~~~i~~-l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~t 551 (1236)
.+|++| ||.++ ++.++ ++++++.. +|+|++ |.+|||||||| |||++++|+||| |
T Consensus 166 ~~ti~~~ni~~~-~~~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----T 221 (305)
T 2v9p_A 166 LASLADTRAALV-DDATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----T 221 (305)
T ss_dssp GGGGTTCSCEEE-EEECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----E
T ss_pred cccHHHHhhccC-ccccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----E
Confidence 999998 99987 33342 34567777 899988 77999999999 999999999999 9
Q ss_pred CCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchhhhhHHhhh
Q 040099 552 SALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQE 624 (1236)
Q Consensus 552 s~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~~~~~~~ 624 (1236)
|+||+.+++.+.. +|||+++++.||+| +|++|+|++.|+|+++ ++.|++++..+.
T Consensus 222 s~LD~~~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el----~~~y~~l~~~~~ 276 (305)
T 2v9p_A 222 SNIDVQAEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW----KSFFVRLWGRLD 276 (305)
T ss_dssp ESSCSTTCGGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH----HHHHHHSTTTTT
T ss_pred CCCCHHHHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH----HHHHHHHHHHcc
Confidence 9999999988752 29999999999999 9999999999999999 478998887554
No 103
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=3.4e-38 Score=354.99 Aligned_cols=229 Identities=17% Similarity=0.251 Sum_probs=186.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCccCCccccEEEeEEEEECCCCCC
Q 040099 946 TFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPH 1025 (1236)
Q Consensus 946 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~ 1025 (1236)
+.+.+.+++.+... ..++..+...+..+.++..+.+|+.++++.+++..... . ..++..+.|+++||+|+|+
T Consensus 41 ~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~--~-~~~~~~~~i~~~~vs~~y~---- 112 (305)
T 2v9p_A 41 SDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGE--G-SWKSILTFFNYQNIELITF---- 112 (305)
T ss_dssp TCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS--C-CTHHHHHHHHHTTCCHHHH----
T ss_pred ccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC--C-cccccCCeEEEEEEEEEcC----
Confidence 33444444444333 47788899999999999999999999998765432211 1 1112234699999999996
Q ss_pred cccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHH
Q 040099 1026 IEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRA 1105 (1236)
Q Consensus 1026 ~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIre 1105 (1236)
.++|+|+||+|++||++|||||||||||||+++|.|++ +|+| +++++|+|.+|.+|+++
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti~~ 171 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASLAD 171 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGGTT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccccHHH
Confidence 35999999999999999999999999999999999999 8998 45789999999999998
Q ss_pred -HHHH----HhhhchHHHh-hhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHH
Q 040099 1106 -NIAE----MANANGFISG-LQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQ 1179 (1236)
Q Consensus 1106 -NL~~----~a~~~~~i~~-lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~ 1179 (1236)
||.- .-+++++++. +|+|+| |.+|||||||| |||++++|+||| ||+||+.+++.|+.
T Consensus 172 ~ni~~~~~~~~~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~---- 234 (305)
T 2v9p_A 172 TRAALVDDATHACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY---- 234 (305)
T ss_dssp CSCEEEEEECHHHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----
T ss_pred HhhccCccccHHHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----
Confidence 8740 1145678888 999998 67899999999 999999999999 99999999998862
Q ss_pred HcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHHhhhcc
Q 040099 1180 VMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPH 1234 (1236)
Q Consensus 1180 ~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~q 1234 (1236)
+|||+++++.||+| ||++|+|++.|+|++| ++.|++++..+
T Consensus 235 ---------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el----~~~y~~l~~~~ 275 (305)
T 2v9p_A 235 ---------LHSRVQTFRFEQPC-TDESGEQPFNITDADW----KSFFVRLWGRL 275 (305)
T ss_dssp ---------GTTTEEEEECCCCC-CCC---CCCCCCHHHH----HHHHHHSTTTT
T ss_pred ---------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH----HHHHHHHHHHc
Confidence 39999999999999 9999999999999999 47899998754
No 104
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.9e-34 Score=352.49 Aligned_cols=199 Identities=23% Similarity=0.297 Sum_probs=166.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ +.+|
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceE
Confidence 5899999999952 3699999999999999999999999999999999999999999975 2369
Q ss_pred EEEccCCCC-CchhHHHHHhcC-CCC-CCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 040099 464 GLVSQEPVL-LSSSIRDNIAYG-KTH-ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIK 540 (1236)
Q Consensus 464 ~~v~Q~~~l-~~~ti~~ni~~g-~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~ 540 (1236)
+||+|++.+ +..||.||+... .+. ...+.+.++ +..+ |+.........+||||||||++|||||+.
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~---------l~~~--~l~~~~~~~~~~LSGGe~qrv~lAraL~~ 418 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTEL---------LKPL--GIIDLYDREVNELSGGELQRVAIAATLLR 418 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHT---------TTTT--TCGGGTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHH---------HHHc--CChhhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999876 566999998753 110 112222222 2222 45445566677899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--cCceEEEEecCchhHhh-cCeEEEEEC--CEEEEEeCcccccc
Q 040099 541 DPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIRN-ANIIAVIQQ--GKIVEKGTHSELLE 610 (1236)
Q Consensus 541 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-ad~i~vl~~--G~i~~~g~~~~l~~ 610 (1236)
+|++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||||++|++ |+++..|++++++.
T Consensus 419 ~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 999999999999999999999999999874 48999999999999875 999999986 78889999988864
No 105
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2.4e-34 Score=354.90 Aligned_cols=199 Identities=23% Similarity=0.293 Sum_probs=166.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++ .+|
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-------------~~i 419 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LTV 419 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-------------CCE
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-------------eEE
Confidence 5899999999952 36999999999999999999999999999999999999999999762 379
Q ss_pred EEEccCCCC-CchhHHHHHhcC-CCC-CCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 040099 464 GLVSQEPVL-LSSSIRDNIAYG-KTH-ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIK 540 (1236)
Q Consensus 464 ~~v~Q~~~l-~~~ti~~ni~~g-~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~ 540 (1236)
||+||++.+ ++.||.||+... .+. ...+.+.++++.. |++........+||||||||++|||||++
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSGGe~QRv~iAraL~~ 488 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPL-----------GIIDLYDRNVEDLSGGELQRVAIAATLLR 488 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHH-----------TCTTTTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc-----------CCchHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999866 567999998753 110 0122233333333 34334455566899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--cCceEEEEecCchhHhh-cCeEEEEEC--CEEEEEeCcccccc
Q 040099 541 DPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIRN-ANIIAVIQQ--GKIVEKGTHSELLE 610 (1236)
Q Consensus 541 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-ad~i~vl~~--G~i~~~g~~~~l~~ 610 (1236)
+|++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||||++|++ |+++..|++++++.
T Consensus 489 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999999999999999999874 48999999999999875 999999986 88888999988865
No 106
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=8.5e-34 Score=345.60 Aligned_cols=199 Identities=21% Similarity=0.239 Sum_probs=164.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+++ ..+
T Consensus 269 ~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i 332 (538)
T 3ozx_A 269 KMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QIL 332 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCE
T ss_pred eEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eee
Confidence 5899999999952 468888999999999999999999999999999999999999999875 369
Q ss_pred EEEccCCCC-CchhHHHHHhcCCCCC---CHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 040099 464 GLVSQEPVL-LSSSIRDNIAYGKTHA---TKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI 539 (1236)
Q Consensus 464 ~~v~Q~~~l-~~~ti~~ni~~g~~~~---~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~ 539 (1236)
+|++|++.. +..||+||+.+..... ..+.+.++++.. |+.........+||||||||++|||||+
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSGGq~QRv~iAraL~ 401 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRL-----------NLHRLLESNVNDLSGGELQKLYIAATLA 401 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTT-----------TGGGCTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHc-----------CCHHHhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999764 4679999998743221 122333333333 4444455566789999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--cCceEEEEecCchhHhh-cCeEEEEEC--CEEEEEeCccccc
Q 040099 540 KDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIRN-ANIIAVIQQ--GKIVEKGTHSELL 609 (1236)
Q Consensus 540 ~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-ad~i~vl~~--G~i~~~g~~~~l~ 609 (1236)
++|+||||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |.+...+++.++.
T Consensus 402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 9999999999999999999999999999885 37899999999999876 999999986 5566666666553
No 107
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=2.2e-33 Score=355.96 Aligned_cols=205 Identities=23% Similarity=0.399 Sum_probs=155.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
-|+++|++|+|++. ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|. .+|
T Consensus 671 mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I 738 (986)
T 2iw3_A 671 IVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRI 738 (986)
T ss_dssp EEEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCE
T ss_pred eEEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cce
Confidence 39999999999742 357999999999999999999999999999999999999999999999862 258
Q ss_pred EEEccCCCC-----CchhHHHHHhc-------------------------------------------------------
Q 040099 464 GLVSQEPVL-----LSSSIRDNIAY------------------------------------------------------- 483 (1236)
Q Consensus 464 ~~v~Q~~~l-----~~~ti~~ni~~------------------------------------------------------- 483 (1236)
+|++|++.. .+.|+++++.+
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 888887531 13355665532
Q ss_pred -----------CCC---CCC--------HHHHH-------------HHHH--------HhccHHHHHhCCCCcccc--cc
Q 040099 484 -----------GKT---HAT--------KEEIQ-------------AAAE--------AANASHFIKNLPQGLDTN--VG 518 (1236)
Q Consensus 484 -----------g~~---~~~--------~~~~~-------------~~~~--------~~~~~~~i~~l~~g~~t~--~g 518 (1236)
+.. ..+ .+++. ++.. ...+.+.+..+ |++.. ..
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~l--GL~~~~~~~ 896 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSML--GLDPEIVSH 896 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHT--TCCHHHHHH
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHc--CCCchhhcC
Confidence 100 000 00000 0000 01123344444 55543 24
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECC
Q 040099 519 EHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQG 597 (1236)
Q Consensus 519 ~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G 597 (1236)
....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ ++|+|+|||+++.+.. ||+|++|++|
T Consensus 897 ~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrVivL~~G 974 (986)
T 2iw3_A 897 SRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEVWAVKDG 974 (986)
T ss_dssp SCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEEECCBTT
T ss_pred CCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 556789999999999999999999999999999999999999999999876 5799999999999865 9999999999
Q ss_pred EEEEEeC
Q 040099 598 KIVEKGT 604 (1236)
Q Consensus 598 ~i~~~g~ 604 (1236)
++++.|+
T Consensus 975 ~Iv~~G~ 981 (986)
T 2iw3_A 975 RMTPSGH 981 (986)
T ss_dssp BCCC---
T ss_pred EEEEeCC
Confidence 9987764
No 108
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.1e-32 Score=339.07 Aligned_cols=198 Identities=24% Similarity=0.370 Sum_probs=164.2
Q ss_pred EeEEEECCCCCCCccccceeEEecCC-----cEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcc
Q 040099 388 KDVNFSYPARPDEQILNGFCLLIPNG-----TIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462 (1236)
Q Consensus 388 ~~v~f~y~~~~~~~~l~~i~~~i~~g-----~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 462 (1236)
++++|+|+. ...+++|+||++++| |++||+||||||||||+++|+|+++|++|+. +. +..
T Consensus 350 ~~~~~~y~~--~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPS--LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN 414 (608)
T ss_dssp SSSCCEECC--EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred cceeEEecC--cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence 677889973 245899999999999 7899999999999999999999999999973 11 346
Q ss_pred eEEEccCCC-CCchhHHHHHhcCCC--CCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 040099 463 IGLVSQEPV-LLSSSIRDNIAYGKT--HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI 539 (1236)
Q Consensus 463 i~~v~Q~~~-l~~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~ 539 (1236)
++|++|++. .|+.|+++|+..... ....+...++++..++ .........+||||||||++|||||+
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l-----------~~~~~~~~~~LSGGqkQRv~iAraL~ 483 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRI-----------DDIIDQEVQHLSGGELQRVAIVLALG 483 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTS-----------TTTSSSBSSSCCHHHHHHHHHHHHTT
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCC-----------hhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999975 467899999864321 1233444444444443 33445566789999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--cCceEEEEecCchhHhh-cCeEEEEEC--CEEEEEeCccccccc
Q 040099 540 KDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIRN-ANIIAVIQQ--GKIVEKGTHSELLEN 611 (1236)
Q Consensus 540 ~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-ad~i~vl~~--G~i~~~g~~~~l~~~ 611 (1236)
.+|+||||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||||++|++ |+++..|++++++..
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999999999999999999999874 48999999999999875 999999996 899999999999864
No 109
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=1.9e-31 Score=336.93 Aligned_cols=199 Identities=25% Similarity=0.380 Sum_probs=138.4
Q ss_pred cccccceeEEecCCCEEEEEcCCCCChHHHH---------------------HHHhcccCCC-------CcEEEECCeec
Q 040099 1026 IEVFRDLCLTIPPGKTIALVGESGSGKSTVI---------------------SLLQRFYDPS-------SGHITLDGVEI 1077 (1236)
Q Consensus 1026 ~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~---------------------~lL~r~~~~~-------~G~I~idG~di 1077 (1236)
..+|+||||+|++||++||+||||||||||+ +++.++..|+ .|.|.++|.++
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3589999999999999999999999999998 8889999998 55666777665
Q ss_pred ccCChHHHhcceEEEcCCCCCC--------------------hhhHHHHHHHHhhh--------------chHHHh---h
Q 040099 1078 QKLQVKWLRQQMGVVSQEPVLF--------------------SDTIRANIAEMANA--------------NGFISG---L 1120 (1236)
Q Consensus 1078 ~~i~~~~lR~~i~~V~Qdp~LF--------------------~gTIreNL~~~a~~--------------~~~i~~---l 1120 (1236)
... .|+.+++|+|.+.++ ..|++||+.-.... .+.... +
T Consensus 111 ~~~----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (670)
T 3ux8_A 111 SRN----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFL 186 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHH
T ss_pred hcc----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHH
Confidence 432 355677777765432 34888987421100 000000 1
Q ss_pred h-hchhhh-hcCCCCCCChhHHHHHHHHHHHccCCC--EEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchh
Q 040099 1121 Q-EGYDTL-VGERGVQLSGGQKQRVAIARAIVKEPK--ILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLST 1195 (1236)
Q Consensus 1121 p-~Gldt~-vge~G~~LSGGQrQRlaLARALlr~p~--ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~t 1195 (1236)
. -|++.. ......+||||||||++|||||+.+|+ +||||||||+||+.+...+.+.|+++. +++|+|+|||+++.
T Consensus 187 ~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~ 266 (670)
T 3ux8_A 187 QNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDT 266 (670)
T ss_dssp HHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHH
T ss_pred HHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 1 022211 234456899999999999999999988 999999999999999999999998864 57899999999999
Q ss_pred hhhcCEEEEE------eCCEEEEecChhHHhhccCcccH
Q 040099 1196 IKNAHLIAVV------SQGMIVEKGSHESLISTKNGIYT 1228 (1236)
Q Consensus 1196 i~~aD~I~Vl------~~G~Ive~Gt~~eLl~~~~g~y~ 1228 (1236)
+..||+|++| ++|++++.|+++++.+.+...+.
T Consensus 267 ~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~~~~~ 305 (670)
T 3ux8_A 267 MLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTG 305 (670)
T ss_dssp HHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTTCHHH
T ss_pred HhhCCEEEEecccccccCCEEEEecCHHHHhcCchhHHH
Confidence 8889999999 89999999999999886443333
No 110
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=1.8e-30 Score=329.83 Aligned_cols=207 Identities=29% Similarity=0.470 Sum_probs=154.1
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHH---------HHHHcCCCCC------Cc------EEEECCeecCCCCH---
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVI---------SLIQRFYDPQ------AG------EVLIDGVNLKEFQL--- 456 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~---------~ll~~~~~~~------~G------~i~~~g~~~~~~~~--- 456 (1236)
..|+||||+|++|++++|+||||||||||+ +++.+...+. +| .+.++..++...+.
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 479999999999999999999999999997 4454444333 33 35555555432110
Q ss_pred -------HHHh-------------------------------cceEEEccCCCCCc------------------------
Q 040099 457 -------KWIR-------------------------------EKIGLVSQEPVLLS------------------------ 474 (1236)
Q Consensus 457 -------~~~r-------------------------------~~i~~v~Q~~~l~~------------------------ 474 (1236)
..+| +..|++.|+..+++
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0111 23577777765543
Q ss_pred ---------hhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHHHHHhcCCC--
Q 040099 475 ---------SSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLD-TNVGEHGIQLSGGQKQRVAIARAMIKDP-- 542 (1236)
Q Consensus 475 ---------~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~g~~g~~LSgGqkqRiaiARal~~~p-- 542 (1236)
.|+.|++.|.......++..+++ ..+ |+. ..+|+.+.+|||||||||+|||||+++|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~~~~~~~~~~L---------~~v--GL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~ 826 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNIPSIKRTLQVL---------HDV--GLGYVKLGQPATTLSGGEAQRIKLASELRKRDTG 826 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTCHHHHHHHHHH---------HHT--TGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCS
T ss_pred cCCHHHHhhCCHHHHHHHHhcchhHHHHHHHH---------HHc--CCchhhccCCccCCCHHHHHHHHHHHHHhhCCCC
Confidence 35666666543221122233333 333 443 3478889999999999999999999876
Q ss_pred -CEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhhcCeEEEE------ECCEEEEEeCcccccccccc
Q 040099 543 -RILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRNANIIAVI------QQGKIVEKGTHSELLENPYG 614 (1236)
Q Consensus 543 -~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~ad~i~vl------~~G~i~~~g~~~~l~~~~~~ 614 (1236)
+||||||||++||+.+++.+++.|+++. +|+|+|+|+|+++.++.||+|++| ++|+|+++|+|+++++++ +
T Consensus 827 p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~-~ 905 (916)
T 3pih_A 827 RTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNP-H 905 (916)
T ss_dssp SEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCT-T
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCC-c
Confidence 7999999999999999999999999885 489999999999999999999999 899999999999999874 5
Q ss_pred hhhhh
Q 040099 615 AYNRL 619 (1236)
Q Consensus 615 ~y~~~ 619 (1236)
.|...
T Consensus 906 syt~~ 910 (916)
T 3pih_A 906 SYTGR 910 (916)
T ss_dssp CHHHH
T ss_pred hHHHH
Confidence 55443
No 111
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.96 E-value=5.8e-29 Score=313.49 Aligned_cols=213 Identities=25% Similarity=0.413 Sum_probs=157.4
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHH-HHcCC-------CC---------------
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISL-IQRFY-------DP--------------- 439 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~l-l~~~~-------~~--------------- 439 (1236)
..|+++|+++ .+|+||||+|++||++||+|+||||||||++. |.|.. .|
T Consensus 501 ~~L~v~~l~~--------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 501 GWLELNGVTR--------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp CEEEEEEEEE--------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred ceEEEEeeee--------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 4599999986 16999999999999999999999999999996 66443 22
Q ss_pred ---CCc-------EEEECCeecCCCCH----------HHHhcce---------EEEccC---------------------
Q 040099 440 ---QAG-------EVLIDGVNLKEFQL----------KWIREKI---------GLVSQE--------------------- 469 (1236)
Q Consensus 440 ---~~G-------~i~~~g~~~~~~~~----------~~~r~~i---------~~v~Q~--------------------- 469 (1236)
.+| .|.+||.++...+. +.+|+.+ ||.++.
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 466 68899988754321 2333322 232221
Q ss_pred -CCCC-------------------------chhHHHHHhcCCCC-----CCHHHHHHHHHHhccHHHHHhCCCCccc-cc
Q 040099 470 -PVLL-------------------------SSSIRDNIAYGKTH-----ATKEEIQAAAEAANASHFIKNLPQGLDT-NV 517 (1236)
Q Consensus 470 -~~l~-------------------------~~ti~~ni~~g~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~ 517 (1236)
-.++ ..||.||+.+...+ ....+.. .+.+.+..+ |+.. ..
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~~------~~~~~L~~~--gL~~~~l 724 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAIF------RALDTLREV--GLGYLRL 724 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHHH------HHHHHHHHT--TCTTSBT
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHHH------HHHHHHHHc--CCCcccc
Confidence 1111 12555555432100 0001111 123445555 5555 46
Q ss_pred cCCCCCCChHHHHHHHHHHHhcCC---CCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhhcCeEEE
Q 040099 518 GEHGIQLSGGQKQRVAIARAMIKD---PRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRNANIIAV 593 (1236)
Q Consensus 518 g~~g~~LSgGqkqRiaiARal~~~---p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~ad~i~v 593 (1236)
+....+|||||||||+|||+|+++ |+||||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+..||+|++
T Consensus 725 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~ 804 (842)
T 2vf7_A 725 GQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLD 804 (842)
T ss_dssp TCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEE
T ss_pred cCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEE
Confidence 788889999999999999999996 69999999999999999999999999884 58999999999999978999999
Q ss_pred E------ECCEEEEEeCccccccc
Q 040099 594 I------QQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 594 l------~~G~i~~~g~~~~l~~~ 611 (1236)
| ++|+|+++|+++++.+.
T Consensus 805 L~p~~g~~~G~Iv~~g~~~el~~~ 828 (842)
T 2vf7_A 805 IGPGAGEDGGRLVAQGTPAEVAQA 828 (842)
T ss_dssp ECSSSGGGCCSEEEEECHHHHTTC
T ss_pred ECCCCCCCCCEEEEEcCHHHHHhC
Confidence 9 69999999999999876
No 112
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.95 E-value=1e-28 Score=310.27 Aligned_cols=209 Identities=25% Similarity=0.388 Sum_probs=157.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHH-c----CC---CCCCc-------------
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQ-R----FY---DPQAG------------- 442 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~-~----~~---~~~~G------------- 442 (1236)
.++++|++. .+|+||||+|++||++||+|+||||||||++.|+ | .+ .+..|
T Consensus 629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 588888852 3699999999999999999999999999999854 2 11 12333
Q ss_pred EEEECCeecCCCC---HH-------HH---------hcceEEEccCCCC---------------------C---------
Q 040099 443 EVLIDGVNLKEFQ---LK-------WI---------REKIGLVSQEPVL---------------------L--------- 473 (1236)
Q Consensus 443 ~i~~~g~~~~~~~---~~-------~~---------r~~i~~v~Q~~~l---------------------~--------- 473 (1236)
.|.+||.++...+ +. .+ .+.+||++|...+ |
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 4788888874321 11 11 1346888885321 0
Q ss_pred -------------------------chhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccc-cccCCCCCCChH
Q 040099 474 -------------------------SSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDT-NVGEHGIQLSGG 527 (1236)
Q Consensus 474 -------------------------~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~g~~g~~LSgG 527 (1236)
..|+.||+.+.... . ++.+ ..+.+..+ |+.. ..+....+||||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~--~-~~~~------~~~~L~~~--gL~~~~l~~~~~~LSGG 849 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASI--P-KIKR------KLETLYDV--GLGYMKLGQPATTLSGG 849 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSC--H-HHHH------HHHHHHHT--TCSSSBTTCCGGGCCHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcc--h-hHHH------HHHHHHHc--CCCcccccCchhhCCHH
Confidence 12556666553221 1 1111 12344555 6665 578888899999
Q ss_pred HHHHHHHHHHhcCCC---CEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhhcCeEEEE------ECC
Q 040099 528 QKQRVAIARAMIKDP---RILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRNANIIAVI------QQG 597 (1236)
Q Consensus 528 qkqRiaiARal~~~p---~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~ad~i~vl------~~G 597 (1236)
|||||+|||||+++| ++|||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+..||+|++| ++|
T Consensus 850 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G 929 (972)
T 2r6f_A 850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGG 929 (972)
T ss_dssp HHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCC
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCC
Confidence 999999999999875 9999999999999999999999999885 589999999999999889999999 789
Q ss_pred EEEEEeCccccccc
Q 040099 598 KIVEKGTHSELLEN 611 (1236)
Q Consensus 598 ~i~~~g~~~~l~~~ 611 (1236)
+|++.|+++++...
T Consensus 930 ~Iv~~g~~~el~~~ 943 (972)
T 2r6f_A 930 QIVAVGTPEEVAEV 943 (972)
T ss_dssp SEEEEESHHHHHTC
T ss_pred EEEEecCHHHHHhC
Confidence 99999999999876
No 113
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.95 E-value=1.1e-28 Score=295.48 Aligned_cols=201 Identities=20% Similarity=0.295 Sum_probs=150.7
Q ss_pred cccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC--------------------------------------CCCcE
Q 040099 402 ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD--------------------------------------PQAGE 443 (1236)
Q Consensus 402 ~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~--------------------------------------~~~G~ 443 (1236)
+|++++|++++| +++|+||||||||||+++|.++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 799999999999 999999999999999999966653 45789
Q ss_pred EEECCeecCCCCHHHHhcc-eEEEccCCCCCchhHHHHHhcCCCCCCH--------------------------------
Q 040099 444 VLIDGVNLKEFQLKWIREK-IGLVSQEPVLLSSSIRDNIAYGKTHATK-------------------------------- 490 (1236)
Q Consensus 444 i~~~g~~~~~~~~~~~r~~-i~~v~Q~~~l~~~ti~~ni~~g~~~~~~-------------------------------- 490 (1236)
+++||.+++..+...+.+. +++++|++.++..+..++..+-......
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~ 208 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHPT 208 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcCc
Confidence 9999999986666777666 8999999877655544443332111100
Q ss_pred ------------HHHHHHHHH-------------hccHHHHHhC--CC----------------Cccc---cccCCCCC-
Q 040099 491 ------------EEIQAAAEA-------------ANASHFIKNL--PQ----------------GLDT---NVGEHGIQ- 523 (1236)
Q Consensus 491 ------------~~~~~~~~~-------------~~~~~~i~~l--~~----------------g~~t---~~g~~g~~- 523 (1236)
+++.+.+.. ..+.+.+..+ |+ |.+. .++.++..
T Consensus 209 ~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 288 (415)
T 4aby_A 209 SLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEE 288 (415)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSCC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCCc
Confidence 000000000 0111222222 11 2222 34444433
Q ss_pred -------CChHHHHHHHHHHHhcCCC--CEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEE
Q 040099 524 -------LSGGQKQRVAIARAMIKDP--RILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVI 594 (1236)
Q Consensus 524 -------LSgGqkqRiaiARal~~~p--~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl 594 (1236)
||||||||++|||+|+.+| ++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+..||++++|
T Consensus 289 ~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l 368 (415)
T 4aby_A 289 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKV 368 (415)
T ss_dssp CCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEE
T ss_pred ccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEE
Confidence 8999999999999999999 9999999999999999999999999998889999999999988889999999
Q ss_pred ----ECCEEEEEe
Q 040099 595 ----QQGKIVEKG 603 (1236)
Q Consensus 595 ----~~G~i~~~g 603 (1236)
++|+++...
T Consensus 369 ~k~~~~G~~~~~~ 381 (415)
T 4aby_A 369 EKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEETTEEEEEE
T ss_pred EEeccCCceEEEE
Confidence 999987653
No 114
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.95 E-value=5.6e-28 Score=289.20 Aligned_cols=185 Identities=22% Similarity=0.251 Sum_probs=146.9
Q ss_pred cccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccC--------------------------------------CCCcE
Q 040099 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD--------------------------------------PSSGH 1069 (1236)
Q Consensus 1028 vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~--------------------------------------~~~G~ 1069 (1236)
+|+++||++++| +++|+|+||||||||+++|.++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 699999999999 999999999999999999966553 45789
Q ss_pred EEECCeecccCChHHHhcc-eEEEcCCCCCChhhHHHHHH---HHhh---------------------------------
Q 040099 1070 ITLDGVEIQKLQVKWLRQQ-MGVVSQEPVLFSDTIRANIA---EMAN--------------------------------- 1112 (1236)
Q Consensus 1070 I~idG~di~~i~~~~lR~~-i~~V~Qdp~LF~gTIreNL~---~~a~--------------------------------- 1112 (1236)
+++||.+++..++..+++. +++++|++.++-.+..++.. ..+.
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~ 208 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHPT 208 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcCc
Confidence 9999999987777888777 89999999877555443321 0000
Q ss_pred ------------------------------------hchHHHhh--h----------------hchhh---hhcCCCCC-
Q 040099 1113 ------------------------------------ANGFISGL--Q----------------EGYDT---LVGERGVQ- 1134 (1236)
Q Consensus 1113 ------------------------------------~~~~i~~l--p----------------~Gldt---~vge~G~~- 1134 (1236)
+.+.+..+ | .|++. .+..++..
T Consensus 209 ~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 288 (415)
T 4aby_A 209 SLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEE 288 (415)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSCC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCCc
Confidence 00001111 1 11111 23334333
Q ss_pred -------CChhHHHHHHHHHHHccCC--CEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEE
Q 040099 1135 -------LSGGQKQRVAIARAIVKEP--KILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVV 1205 (1236)
Q Consensus 1135 -------LSGGQrQRlaLARALlr~p--~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl 1205 (1236)
||||||||++|||+|+.+| +||||||||++||+.+...+.+.|+++.+++|||+|||+++.+..||+|+||
T Consensus 289 ~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l 368 (415)
T 4aby_A 289 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKV 368 (415)
T ss_dssp CCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEE
T ss_pred ccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEE
Confidence 7999999999999999999 9999999999999999999999999988889999999999998889999999
Q ss_pred ----eCCEEEEe
Q 040099 1206 ----SQGMIVEK 1213 (1236)
Q Consensus 1206 ----~~G~Ive~ 1213 (1236)
++|+++..
T Consensus 369 ~k~~~~G~~~~~ 380 (415)
T 4aby_A 369 EKQVEDGRTVSH 380 (415)
T ss_dssp EEEEETTEEEEE
T ss_pred EEeccCCceEEE
Confidence 99998755
No 115
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.95 E-value=4e-28 Score=306.22 Aligned_cols=210 Identities=23% Similarity=0.364 Sum_probs=155.7
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHH-----cCCC---CCCcE-----------
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQ-----RFYD---PQAGE----------- 443 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~-----~~~~---~~~G~----------- 443 (1236)
..++++|++. .+|+||||+|++|+++||+|+||||||||+++|+ +.+. +..|.
T Consensus 646 ~~L~v~~l~~--------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~ 717 (993)
T 2ygr_A 646 RQLTVVGARE--------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLD 717 (993)
T ss_dssp SEEEEEEECS--------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCS
T ss_pred ceEEEecCcc--------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccc
Confidence 3589999852 2699999999999999999999999999999853 2222 23443
Q ss_pred --EEECCeecCCC---CHH-------HH---------hcceEEEccCCCC---------------------C--------
Q 040099 444 --VLIDGVNLKEF---QLK-------WI---------REKIGLVSQEPVL---------------------L-------- 473 (1236)
Q Consensus 444 --i~~~g~~~~~~---~~~-------~~---------r~~i~~v~Q~~~l---------------------~-------- 473 (1236)
|.+|+.++... ++. .+ .+..||++|...+ |
T Consensus 718 ~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~c 797 (993)
T 2ygr_A 718 KLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPC 797 (993)
T ss_dssp EEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEEC
T ss_pred eEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeee
Confidence 45566555321 111 11 1346787775321 0
Q ss_pred --------------------------chhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccc-cccCCCCCCCh
Q 040099 474 --------------------------SSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDT-NVGEHGIQLSG 526 (1236)
Q Consensus 474 --------------------------~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~g~~g~~LSg 526 (1236)
..|+.||+.|.... ..+.+ ..+.+..+ |+.. ..++...+|||
T Consensus 798 e~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~---~~~~~------~~~~L~~l--gL~~~~l~~~~~~LSG 866 (993)
T 2ygr_A 798 EVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPI---AGVHR------YLRTLVDV--GLGYVRLGQPAPTLSG 866 (993)
T ss_dssp TTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTC---HHHHH------HHHHHHHT--TGGGSBTTCCGGGSCH
T ss_pred hhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcc---hHHHH------HHHHHHHc--CCCcccccCccccCCH
Confidence 12445555543211 11111 12344555 6665 57888889999
Q ss_pred HHHHHHHHHHHhcCCC---CEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhhcCeEEEE------EC
Q 040099 527 GQKQRVAIARAMIKDP---RILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRNANIIAVI------QQ 596 (1236)
Q Consensus 527 GqkqRiaiARal~~~p---~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~ad~i~vl------~~ 596 (1236)
||||||+|||||+++| ++|||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+..||+|++| ++
T Consensus 867 GekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~~ 946 (993)
T 2ygr_A 867 GEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGG 946 (993)
T ss_dssp HHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTSC
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCCC
Confidence 9999999999999875 9999999999999999999999999885 589999999999999889999999 68
Q ss_pred CEEEEEeCccccccc
Q 040099 597 GKIVEKGTHSELLEN 611 (1236)
Q Consensus 597 G~i~~~g~~~~l~~~ 611 (1236)
|+|++.|+++++.+.
T Consensus 947 G~Iv~~G~~~el~~~ 961 (993)
T 2ygr_A 947 GTVVAQGTPEDVAAV 961 (993)
T ss_dssp SEEEEEECHHHHHHC
T ss_pred CEEEEecCHHHHHhC
Confidence 999999999999875
No 116
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8.4e-32 Score=321.54 Aligned_cols=194 Identities=14% Similarity=0.132 Sum_probs=151.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCc-E-EEECCeecCCCCHHHHhc
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG-E-VLIDGVNLKEFQLKWIRE 461 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G-~-i~~~g~~~~~~~~~~~r~ 461 (1236)
-++++||+|+| .++||++++|++++|+||||||||||+|+|+|++.|++| + |++|| + .|+
T Consensus 118 mi~~~nl~~~y---------~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~ 179 (460)
T 2npi_A 118 MKYIYNLHFML---------EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQ 179 (460)
T ss_dssp HHHHHHHHHHH---------HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTS
T ss_pred hhhhhhhhehh---------hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccC
Confidence 35566666666 279999999999999999999999999999999999999 9 99998 1 367
Q ss_pred ceEEEccCCCCCc----hhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 040099 462 KIGLVSQEPVLLS----SSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARA 537 (1236)
Q Consensus 462 ~i~~v~Q~~~l~~----~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARa 537 (1236)
.++||||++.+|. .|++||+ ++........ ....+.+.+..+ |+++... +.+||||||||++||||
T Consensus 180 ~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~-----~~~~~~~ll~~~--gl~~~~~--~~~LSgGq~qrlalAra 249 (460)
T 2npi_A 180 PIFTVPGCISATPISDILDAQLPT-WGQSLTSGAT-----LLHNKQPMVKNF--GLERINE--NKDLYLECISQLGQVVG 249 (460)
T ss_dssp CSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCC-----SSCCBCCEECCC--CSSSGGG--CHHHHHHHHHHHHHHHH
T ss_pred Ceeeeccchhhcccccccchhhhh-cccccccCcc-----hHHHHHHHHHHh--CCCcccc--hhhhhHHHHHHHHHHHH
Confidence 8999999986543 4899999 7643100000 000111112222 5555443 67899999999999999
Q ss_pred --hcCCCCE----EEEeC-cCCCCCHHHHHHHHHHHHHHccCceEEEEecCch------hHh-hcCe-----EEEEE-CC
Q 040099 538 --MIKDPRI----LLLDE-ATSALDSESGRMVQEALDRVMINRTTVIVSHRLS------LIR-NANI-----IAVIQ-QG 597 (1236)
Q Consensus 538 --l~~~p~i----lilDE-~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~------~~~-~ad~-----i~vl~-~G 597 (1236)
|+.+|++ ||||| ||++||+. ...+.+.++++ ++|+|+|+|+.+ .+. .||+ |++|+ +|
T Consensus 250 ~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G 326 (460)
T 2npi_A 250 QRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLD 326 (460)
T ss_dssp HHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCT
T ss_pred HHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCC
Confidence 9999999 99999 99999999 66677776664 789999999987 554 4999 99999 99
Q ss_pred EEEEEeCccccc
Q 040099 598 KIVEKGTHSELL 609 (1236)
Q Consensus 598 ~i~~~g~~~~l~ 609 (1236)
+++ .|+++++.
T Consensus 327 ~iv-~g~~~~~~ 337 (460)
T 2npi_A 327 GVS-AVDDVYKR 337 (460)
T ss_dssp TCC-CCCHHHHH
T ss_pred cEE-ECCHHHHh
Confidence 999 99998874
No 117
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.1e-31 Score=315.56 Aligned_cols=186 Identities=11% Similarity=0.071 Sum_probs=148.7
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCc-E-EEECCeecccCChHHHhcc
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG-H-ITLDGVEIQKLQVKWLRQQ 1088 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G-~-I~idG~di~~i~~~~lR~~ 1088 (1236)
++++||+++| .++||++++||+++|+||||||||||+++|+|++.|++| + |++|| | .|+.
T Consensus 119 i~~~nl~~~y---------~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~~ 180 (460)
T 2npi_A 119 KYIYNLHFML---------EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQP 180 (460)
T ss_dssp HHHHHHHHHH---------HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTSC
T ss_pred hhhhhhhehh---------hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccCC
Confidence 5555555555 379999999999999999999999999999999999999 9 99998 2 3788
Q ss_pred eEEEcCCCCCCh----hhHHHHHHHHhhh------chHHHhhh--hchhhhhcCCCCCCChhHHHHHHHHHH--HccCCC
Q 040099 1089 MGVVSQEPVLFS----DTIRANIAEMANA------NGFISGLQ--EGYDTLVGERGVQLSGGQKQRVAIARA--IVKEPK 1154 (1236)
Q Consensus 1089 i~~V~Qdp~LF~----gTIreNL~~~a~~------~~~i~~lp--~Gldt~vge~G~~LSGGQrQRlaLARA--Llr~p~ 1154 (1236)
+++|||++.+|. .|++||+. .... .+.+..+- -|++.... ..+||||||||++|||| |+.+|+
T Consensus 181 i~~vpq~~~l~~~~~~~tv~eni~-~~~~~~~~~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~ 257 (460)
T 2npi_A 181 IFTVPGCISATPISDILDAQLPTW-GQSLTSGATLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQ 257 (460)
T ss_dssp SSSCSSCCEEEECCSCCCTTCTTC-SCBCBSSCCSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred eeeeccchhhcccccccchhhhhc-ccccccCcchHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcc
Confidence 999999986543 48888871 1100 00010000 14444433 67899999999999999 999999
Q ss_pred E----EEEec-CCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCch------hhh-hcCE-----EEEEe-CCEEEEecCh
Q 040099 1155 I----LLLDE-ATSALDIESERVVQDALDQVMVDRTTLVVAHRLS------TIK-NAHL-----IAVVS-QGMIVEKGSH 1216 (1236)
Q Consensus 1155 I----LlLDE-aTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~------ti~-~aD~-----I~Vl~-~G~Ive~Gt~ 1216 (1236)
| ||||| ||++||+. ...+.+.+++. +.|+|+|+|+.+ .++ .||+ |++|+ +|+|+ .|++
T Consensus 258 i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~ 333 (460)
T 2npi_A 258 VRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDD 333 (460)
T ss_dssp HHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCH
T ss_pred cCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCH
Confidence 9 99999 99999999 77777777764 789999999988 554 4999 99999 99999 9999
Q ss_pred hHHhh
Q 040099 1217 ESLIS 1221 (1236)
Q Consensus 1217 ~eLl~ 1221 (1236)
+++.+
T Consensus 334 ~~~~~ 338 (460)
T 2npi_A 334 VYKRS 338 (460)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 98854
No 118
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=7e-26 Score=260.86 Aligned_cols=194 Identities=19% Similarity=0.267 Sum_probs=141.1
Q ss_pred ceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCC-----------------------------------------------
Q 040099 405 GFCLLIPNGTIAALVGTSGSGKSTVISLIQRFY----------------------------------------------- 437 (1236)
Q Consensus 405 ~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~----------------------------------------------- 437 (1236)
++++++.+| +++|+||||||||||+++|..+.
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r 95 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVAR 95 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEE
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEE
Confidence 578899999 99999999999999999998432
Q ss_pred ---CCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCC-chhHHHHHhcCCCCC---------------CHHHHHHHHH
Q 040099 438 ---DPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLL-SSSIRDNIAYGKTHA---------------TKEEIQAAAE 498 (1236)
Q Consensus 438 ---~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~ni~~g~~~~---------------~~~~~~~~~~ 498 (1236)
.+.+|.+++||.+++..+...+...+++.+|+..++ .+++.+|+....... +.+++.+...
T Consensus 96 ~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~~ 175 (322)
T 1e69_A 96 ELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESFN 175 (322)
T ss_dssp EEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHHH
T ss_pred EEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 344678999999876555566667889999988765 789999987532100 0011222111
Q ss_pred Hh------------cc-HHHHHhCCCCcccccc------CCCCCCChHHHHHHHHHHHhc----CCCCEEEEeCcCCCCC
Q 040099 499 AA------------NA-SHFIKNLPQGLDTNVG------EHGIQLSGGQKQRVAIARAMI----KDPRILLLDEATSALD 555 (1236)
Q Consensus 499 ~~------------~~-~~~i~~l~~g~~t~~g------~~g~~LSgGqkqRiaiARal~----~~p~ililDE~ts~lD 555 (1236)
.. .+ ......++.|+++.++ .....||||||||++|||||+ .+|++|||||||++||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD 255 (322)
T 1e69_A 176 RFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLD 255 (322)
T ss_dssp HHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCC
T ss_pred HHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCC
Confidence 10 00 0011234556665433 234689999999999999996 7899999999999999
Q ss_pred HHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeE--EEEECCEE
Q 040099 556 SESGRMVQEALDRVMINRTTVIVSHRLSLIRNANII--AVIQQGKI 599 (1236)
Q Consensus 556 ~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i--~vl~~G~i 599 (1236)
+.+...+.+.|+++.+++|+|+|||+++.+..||++ ++|++|+.
T Consensus 256 ~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s 301 (322)
T 1e69_A 256 DYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVS 301 (322)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEE
Confidence 999999999999987788999999998877889987 88888864
No 119
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.92 E-value=1.5e-25 Score=258.22 Aligned_cols=189 Identities=21% Similarity=0.278 Sum_probs=142.4
Q ss_pred cceeEEecCCCEEEEEcCCCCChHHHHHHHhcc-----------------------------------------------
Q 040099 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQRF----------------------------------------------- 1062 (1236)
Q Consensus 1030 ~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~----------------------------------------------- 1062 (1236)
+++++++.+| .++|+|+||||||||+.+|..+
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3678899999 9999999999999999999833
Q ss_pred ---cCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCC-hhhHHHHHH-----------HH--------------hhh
Q 040099 1063 ---YDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLF-SDTIRANIA-----------EM--------------ANA 1113 (1236)
Q Consensus 1063 ---~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF-~gTIreNL~-----------~~--------------a~~ 1113 (1236)
+.+.+|.+++||.+++.-+...+++.+++.||+..++ .|+|.+|+. .. .+.
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3444679999999987666777778899999988765 888888762 00 000
Q ss_pred chH------------------HHhhhhchhhhhc------CCCCCCChhHHHHHHHHHHHc----cCCCEEEEecCCCCC
Q 040099 1114 NGF------------------ISGLQEGYDTLVG------ERGVQLSGGQKQRVAIARAIV----KEPKILLLDEATSAL 1165 (1236)
Q Consensus 1114 ~~~------------------i~~lp~Gldt~vg------e~G~~LSGGQrQRlaLARALl----r~p~ILlLDEaTSaL 1165 (1236)
.++ ...++.|+++.++ .....||||||||++|||||. ++|+||||||||++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 011 0123445555433 234689999999999999996 789999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEE--EEEeCCEE-EEecChhHH
Q 040099 1166 DIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLI--AVVSQGMI-VEKGSHESL 1219 (1236)
Q Consensus 1166 D~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I--~Vl~~G~I-ve~Gt~~eL 1219 (1236)
|+.+...+.+.|++..+++|+|+|||+.+.+..||++ ++|++|+. +...+.++.
T Consensus 255 D~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 255 DDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC---
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcchh
Confidence 9999999999999987788999999998888889987 88888853 333444443
No 120
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.92 E-value=2.1e-27 Score=254.48 Aligned_cols=158 Identities=18% Similarity=0.250 Sum_probs=102.0
Q ss_pred CccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHH
Q 040099 400 EQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRD 479 (1236)
Q Consensus 400 ~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 479 (1236)
+.+|+|+ ++||+++|+||||||||||+++|+|+ +|++|+|. +.++.. +...++++||||||++ +|
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~e 77 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NE 77 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC-----------
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HH
Confidence 4689996 89999999999999999999999999 99999994 333321 2223577899999997 56
Q ss_pred HH-hcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHH
Q 040099 480 NI-AYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSES 558 (1236)
Q Consensus 480 ni-~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~ 558 (1236)
|+ .++.+. .+.+........+.+.+.. | | |||||++|||||+.+|++||||||||+ +
T Consensus 78 nl~~~~~~~--~~~~~~~~~~~~~~~~l~~---g-----------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~ 135 (208)
T 3b85_A 78 KIDPYLRPL--HDALRDMVEPEVIPKLMEA---G-----------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----T 135 (208)
T ss_dssp --CTTTHHH--HHHHTTTSCTTHHHHHHHT---T-----------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----C
T ss_pred HHHHHHHHH--HHHHHHhccHHHHHHHHHh---C-----------C--chHHHHHHHHHHhcCCCEEEEeCCccc----c
Confidence 66 332110 0000000000111222221 2 1 999999999999999999999999999 8
Q ss_pred HHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCE
Q 040099 559 GRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGK 598 (1236)
Q Consensus 559 ~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~ 598 (1236)
...+.+.|+++.+++|+| +||+++.+. ++...++|.
T Consensus 136 ~~~l~~~l~~l~~g~tii-vtHd~~~~~---~~~~~~~G~ 171 (208)
T 3b85_A 136 PAQMKMFLTRLGFGSKMV-VTGDITQVD---LPGGQKSGL 171 (208)
T ss_dssp HHHHHHHHTTBCTTCEEE-EEEC---------------CC
T ss_pred HHHHHHHHHHhcCCCEEE-EECCHHHHh---CcCCCCCcH
Confidence 888999998875578888 999988654 344455653
No 121
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.91 E-value=9.9e-27 Score=249.33 Aligned_cols=156 Identities=13% Similarity=0.170 Sum_probs=103.6
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHH
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRAN 1106 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreN 1106 (1236)
.+|+|+ ++||++||+||||||||||+++|.|+ +|++|+|. +.++.. +...+|++++||||+| +||
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~en 78 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NEK 78 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC------------
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HHH
Confidence 589995 99999999999999999999999999 99999994 344432 2334688999999998 444
Q ss_pred HHHHh-hhchHHHh--hhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCC
Q 040099 1107 IAEMA-NANGFISG--LQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVD 1183 (1236)
Q Consensus 1107 L~~~a-~~~~~i~~--lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~ 1183 (1236)
+.... ...+-+.. -.+..+..+.. | | |||||++|||||+.+|+|||||||||+ +...+.+.|+++.++
T Consensus 79 l~~~~~~~~~~~~~~~~~~~~~~~l~~-g--l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~~g 149 (208)
T 3b85_A 79 IDPYLRPLHDALRDMVEPEVIPKLMEA-G--I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLGFG 149 (208)
T ss_dssp -CTTTHHHHHHHTTTSCTTHHHHHHHT-T--S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBCTT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHh-C--C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhcCC
Confidence 41000 00000000 01123333433 2 3 999999999999999999999999999 888999999887457
Q ss_pred CeEEEEecCchhhhhcCEEEEEeCCEE
Q 040099 1184 RTTLVVAHRLSTIKNAHLIAVVSQGMI 1210 (1236)
Q Consensus 1184 ~TvI~IaHRl~ti~~aD~I~Vl~~G~I 1210 (1236)
+|+| |||+++.+. ++...++|..
T Consensus 150 ~tii-vtHd~~~~~---~~~~~~~G~~ 172 (208)
T 3b85_A 150 SKMV-VTGDITQVD---LPGGQKSGLR 172 (208)
T ss_dssp CEEE-EEEC---------------CCH
T ss_pred CEEE-EECCHHHHh---CcCCCCCcHH
Confidence 8899 999988655 3445667743
No 122
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.91 E-value=2.8e-25 Score=231.71 Aligned_cols=149 Identities=16% Similarity=0.205 Sum_probs=115.4
Q ss_pred ceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCC--CCChhhHHHHHH
Q 040099 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEP--VLFSDTIRANIA 1108 (1236)
Q Consensus 1031 ~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp--~LF~gTIreNL~ 1108 (1236)
||||++++||.++|+||||||||||++++.+ |... ++.+.+| ++++|++ ..+.++..+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~--------~~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEV--------ISSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGE--------EEHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeE--------EccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653 2111 2334455 6788987 466777777764
Q ss_pred HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH----------------HH
Q 040099 1109 EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESE----------------RV 1172 (1236)
Q Consensus 1109 ~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te----------------~~ 1172 (1236)
..+. ..+..|+.+.+... ...|||||||++||||+..+|++|+|||||++||+.++ ..
T Consensus 64 ~~~~-----~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~ 137 (171)
T 4gp7_A 64 YIVS-----KRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQ 137 (171)
T ss_dssp HHHH-----HHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHH
T ss_pred HHHH-----HHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHH
Confidence 3322 22345665555443 35699999999999999999999999999999999954 77
Q ss_pred HHHHHHHHc-CCCeEEEEecCchhhhhcCEE
Q 040099 1173 VQDALDQVM-VDRTTLVVAHRLSTIKNAHLI 1202 (1236)
Q Consensus 1173 I~~~L~~~~-~~~TvI~IaHRl~ti~~aD~I 1202 (1236)
+.+.|++.. +|.|+|+|+|+++.+..++++
T Consensus 138 l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 138 MKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp HHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred hhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 777766543 488999999999999888775
No 123
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.90 E-value=8.9e-28 Score=276.21 Aligned_cols=205 Identities=14% Similarity=0.074 Sum_probs=147.7
Q ss_pred CcChhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCCccccccCCCCC-CCCCCcEE---------
Q 040099 318 GYSGGDVMSVIFGVLIGSMSLGQASP-CLSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKL-DDIRGDIE--------- 386 (1236)
Q Consensus 318 ~~t~g~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~-~~~~~~i~--------- 386 (1236)
.+|.|++.+++.++.....+ .+.. ....++.+..+.+|+.++++.|+...... .... ....+.++
T Consensus 75 ~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~Ri~~~l~~p~~~~~~~--~~~ir~~~~~~i~l~~l~~~g~ 150 (330)
T 2pt7_A 75 AFSLSRLMHFARCCASFKKK--TIDNYENPILSSNLANGERVQIVLSPVTVNDETI--SISIRIPSKTTYPHSFFEEQGF 150 (330)
T ss_dssp GGSHHHHHHHHHHHHHHTTC--CCCSSSCCEEEEECTTSCEEEEECTTTSSSTTCC--EEEEECCCCCCCCHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHhCC--CCCCCCCeeEEEEcCCCcEEEEEEcCCccCCCCc--eEEEeCCCCCCCCHHHHHhCCC
Confidence 68999999888776654433 2222 22233334445678877775433211100 0000 00122344
Q ss_pred EEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEE
Q 040099 387 LKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLV 466 (1236)
Q Consensus 387 ~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 466 (1236)
|++++| | .++++++||++++|+.++|+||||||||||+++|+|+++|++|.|.++|.+. +....+++.++++
T Consensus 151 ~~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e--~~~~~~~~~i~~~ 222 (330)
T 2pt7_A 151 YNLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE--IVFKHHKNYTQLF 222 (330)
T ss_dssp TTTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC--CCCSSCSSEEEEE
T ss_pred cCchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec--cccccchhEEEEE
Confidence 666666 6 2489999999999999999999999999999999999999999999998752 2222345566665
Q ss_pred ccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEE
Q 040099 467 SQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILL 546 (1236)
Q Consensus 467 ~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ili 546 (1236)
+| |||+||++|||||..+|+++|
T Consensus 223 ~g---------------------------------------------------------gg~~~r~~la~aL~~~p~ili 245 (330)
T 2pt7_A 223 FG---------------------------------------------------------GNITSADCLKSCLRMRPDRII 245 (330)
T ss_dssp CB---------------------------------------------------------TTBCHHHHHHHHTTSCCSEEE
T ss_pred eC---------------------------------------------------------CChhHHHHHHHHhhhCCCEEE
Confidence 40 899999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHccCc-eEEEEecCchhHhhcCeEEEEECCE
Q 040099 547 LDEATSALDSESGRMVQEALDRVMINR-TTVIVSHRLSLIRNANIIAVIQQGK 598 (1236)
Q Consensus 547 lDE~ts~lD~~~~~~i~~~l~~~~~~~-t~i~itH~~~~~~~ad~i~vl~~G~ 598 (1236)
|||||+. .+.+.|+.+..|+ |+|+++|+++....|||+++|++|+
T Consensus 246 ldE~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 246 LGELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp ECCCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred EcCCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCC
Confidence 9999992 2456666666665 7999999999878899999998874
No 124
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.90 E-value=5.5e-25 Score=229.42 Aligned_cols=149 Identities=19% Similarity=0.236 Sum_probs=109.2
Q ss_pred ceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCC--CCchhHHHHHh
Q 040099 405 GFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPV--LLSSSIRDNIA 482 (1236)
Q Consensus 405 ~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~--l~~~ti~~ni~ 482 (1236)
||||++++||+++|+||||||||||++++.+ |...+ +.+.+| ++++|++. .+.+++++++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~--------~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVI--------SSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEE--------EHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEE--------ccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653 22222 222333 67888763 33444444432
Q ss_pred cCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHH---
Q 040099 483 YGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESG--- 559 (1236)
Q Consensus 483 ~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~--- 559 (1236)
. ..+ ..+..|+.+.+... ...|||||||++||||+..+|++|+|||||++||+.++
T Consensus 64 ~------------~~~--------~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 64 Y------------IVS--------KRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp H------------HHH--------HHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred H------------HHH--------HHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 1 110 11122565555543 35699999999999999999999999999999999944
Q ss_pred -------------HHHHHHHHHHc-cCceEEEEecCchhHhhcCeE
Q 040099 560 -------------RMVQEALDRVM-INRTTVIVSHRLSLIRNANII 591 (1236)
Q Consensus 560 -------------~~i~~~l~~~~-~~~t~i~itH~~~~~~~ad~i 591 (1236)
+.+.+.++++. +|.|+|+|||+++.+..++++
T Consensus 123 ~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 123 DRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp SCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 77788776663 489999999999999877665
No 125
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.90 E-value=2.1e-23 Score=243.55 Aligned_cols=84 Identities=24% Similarity=0.361 Sum_probs=76.9
Q ss_pred cCCCCCCChHHHHHHHHHHHhc------CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhhcCe
Q 040099 518 GEHGIQLSGGQKQRVAIARAMI------KDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRNANI 590 (1236)
Q Consensus 518 g~~g~~LSgGqkqRiaiARal~------~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~ad~ 590 (1236)
+....+||||||||++|||||+ .+|++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++....||+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDR 353 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 3456689999999999999999 7999999999999999999999999999885 47899999999999878999
Q ss_pred EEEEECCEEEE
Q 040099 591 IAVIQQGKIVE 601 (1236)
Q Consensus 591 i~vl~~G~i~~ 601 (1236)
+++|++|++++
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999975
No 126
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.90 E-value=7e-26 Score=260.43 Aligned_cols=141 Identities=18% Similarity=0.211 Sum_probs=119.6
Q ss_pred EeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEE
Q 040099 1013 FLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVV 1092 (1236)
Q Consensus 1013 f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V 1092 (1236)
|++|+| | .++++++||+|++|+.++|+||||||||||+++|.|+++|++|.|+++|.+ ++....+|+.++++
T Consensus 151 ~~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~ 222 (330)
T 2pt7_A 151 YNLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLF 222 (330)
T ss_dssp TTTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEE
T ss_pred cCchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEE
Confidence 666666 6 138999999999999999999999999999999999999999999999976 33333456777776
Q ss_pred cCCCCCChhhHHHHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHH
Q 040099 1093 SQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERV 1172 (1236)
Q Consensus 1093 ~Qdp~LF~gTIreNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~ 1172 (1236)
+| |||+||++|||||.++|++|+|||||+. .
T Consensus 223 ~g------------------------------------------gg~~~r~~la~aL~~~p~ilildE~~~~-------e 253 (330)
T 2pt7_A 223 FG------------------------------------------GNITSADCLKSCLRMRPDRIILGELRSS-------E 253 (330)
T ss_dssp CB------------------------------------------TTBCHHHHHHHHTTSCCSEEEECCCCST-------H
T ss_pred eC------------------------------------------CChhHHHHHHHHhhhCCCEEEEcCCChH-------H
Confidence 51 8999999999999999999999999982 2
Q ss_pred HHHHHHHHcCCC-eEEEEecCchhhhhcCEEEEEeCCEE
Q 040099 1173 VQDALDQVMVDR-TTLVVAHRLSTIKNAHLIAVVSQGMI 1210 (1236)
Q Consensus 1173 I~~~L~~~~~~~-TvI~IaHRl~ti~~aD~I~Vl~~G~I 1210 (1236)
+++.|+.+..++ |+|+++|+++....||||++|++|..
T Consensus 254 ~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 254 AYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp HHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 456666666665 79999999998888999999998863
No 127
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.89 E-value=6.1e-23 Score=239.66 Aligned_cols=82 Identities=20% Similarity=0.353 Sum_probs=75.5
Q ss_pred CCCCCChhHHHHHHHHHHHc------cCCCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhhcCEEE
Q 040099 1131 RGVQLSGGQKQRVAIARAIV------KEPKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKNAHLIA 1203 (1236)
Q Consensus 1131 ~G~~LSGGQrQRlaLARALl------r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~aD~I~ 1203 (1236)
...+||||||||++|||||+ .+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+..||+|+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~~ 355 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRKL 355 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCEE
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEE
Confidence 44579999999999999999 7999999999999999999999999999874 4789999999999988899999
Q ss_pred EEeCCEEEE
Q 040099 1204 VVSQGMIVE 1212 (1236)
Q Consensus 1204 Vl~~G~Ive 1212 (1236)
+|++|+|++
T Consensus 356 ~l~~G~i~~ 364 (365)
T 3qf7_A 356 RITGGVVVN 364 (365)
T ss_dssp EEETTEEC-
T ss_pred EEECCEEEe
Confidence 999999975
No 128
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.89 E-value=8.4e-25 Score=228.84 Aligned_cols=148 Identities=16% Similarity=0.219 Sum_probs=111.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHHhhhchHHHhh
Q 040099 1041 TIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGL 1120 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~~~~i~~l 1120 (1236)
+++|+||||||||||+++|.|++. |.++|.+..+......++++++++|++ +..+|+. +.. . .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~--~~~-~----~ 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF--SSK-F----F 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE--EET-T----C
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH--Hhh-c----C
Confidence 689999999999999999999995 678888775554225678999999997 2333331 111 0 0
Q ss_pred hhchhhhhcCCCCCCChhHHHHHHHHHH-----HccCCCEEEEec--CCCCCCHHHHHHHHHHHHHHcCCCeEEEEec--
Q 040099 1121 QEGYDTLVGERGVQLSGGQKQRVAIARA-----IVKEPKILLLDE--ATSALDIESERVVQDALDQVMVDRTTLVVAH-- 1191 (1236)
Q Consensus 1121 p~Gldt~vge~G~~LSGGQrQRlaLARA-----Llr~p~ILlLDE--aTSaLD~~te~~I~~~L~~~~~~~TvI~IaH-- 1191 (1236)
+ .+..++..+.+||||||||++|||| ++.+|++||||| ||+++|+.+.+.+.+.+++ .+.|+|+++|
T Consensus 65 ~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~ 140 (178)
T 1ye8_A 65 T--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIR 140 (178)
T ss_dssp C--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSS
T ss_pred C--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccC
Confidence 1 1124566677899999999999996 999999999999 9999999999999999976 4677899885
Q ss_pred -Cchhhhh-cCEEEEEeCCEEEEe
Q 040099 1192 -RLSTIKN-AHLIAVVSQGMIVEK 1213 (1236)
Q Consensus 1192 -Rl~ti~~-aD~I~Vl~~G~Ive~ 1213 (1236)
+.+.+.. ||+ .+|+|++.
T Consensus 141 h~~~~~~~i~~r----~~~~i~~~ 160 (178)
T 1ye8_A 141 DVHPLVKEIRRL----PGAVLIEL 160 (178)
T ss_dssp CCSHHHHHHHTC----TTCEEEEC
T ss_pred CCchHHHHHHhc----CCcEEEEe
Confidence 6677765 777 66777763
No 129
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.89 E-value=3.9e-27 Score=255.68 Aligned_cols=166 Identities=17% Similarity=0.175 Sum_probs=120.4
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCH-HHHhcceEEEccCCCCCch----
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQL-KWIREKIGLVSQEPVLLSS---- 475 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~i~~v~Q~~~l~~~---- 475 (1236)
.-|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.++...+. ...++.++|++|++.+|..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4799999999999999999999999999999999999 6 99999 877654322 2346789999999876653
Q ss_pred -------hHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHH-----HHHhcCCCC
Q 040099 476 -------SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAI-----ARAMIKDPR 543 (1236)
Q Consensus 476 -------ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiai-----ARal~~~p~ 543 (1236)
++.+| .+|. ..+++.++++... ...++ .+||||||||++| ||+++.+|+
T Consensus 87 ~~~l~~~~~~~~-~~g~---~~~~i~~~l~~~~------------~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~ 147 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGT---LKSEYDKAKEQNK------------ICLFE---MNINGVKQLKKSTHIKNALYIFIKPPS 147 (218)
T ss_dssp TCEEEEEEETTE-EEEE---EHHHHHHHHHTTC------------EEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSC
T ss_pred cchhhhhhcccc-cCCC---cHHHHHHHHhCCC------------cEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcC
Confidence 22333 2332 2344555544321 12222 5799999999999 999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEEC
Q 040099 544 ILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQ 596 (1236)
Q Consensus 544 ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~ 596 (1236)
+++|||||+++|.+++..|.+.+.+..+++| ++| +..||.|+|+++
T Consensus 148 ~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 148 TDVLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 9999999999999999999999988877777 677 467999988764
No 130
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.89 E-value=8.5e-25 Score=228.83 Aligned_cols=147 Identities=14% Similarity=0.212 Sum_probs=109.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHH
Q 040099 415 IAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQ 494 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~ 494 (1236)
+++|+||||||||||+++|+|++. |.++|.+..+......++++||++|++ +..+|+ ++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~-~~~~-------- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKI-FSSK-------- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEE-EEET--------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHH-HHhh--------
Confidence 689999999999999999999985 567776654433224577899999986 222332 1100
Q ss_pred HHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH-----hcCCCCEEEEeC--cCCCCCHHHHHHHHHHHH
Q 040099 495 AAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARA-----MIKDPRILLLDE--ATSALDSESGRMVQEALD 567 (1236)
Q Consensus 495 ~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARa-----l~~~p~ililDE--~ts~lD~~~~~~i~~~l~ 567 (1236)
..+ .+..+++.+.+||||||||++|||| ++.+|+++|||| ||++||+...+.+.+.++
T Consensus 63 -------------~~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~ 127 (178)
T 1ye8_A 63 -------------FFT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH 127 (178)
T ss_dssp -------------TCC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred -------------cCC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHh
Confidence 001 1135677788999999999999996 999999999999 999999999999999887
Q ss_pred HHccCceEEEEec---CchhHhh-cCeEEEEECCEEEE
Q 040099 568 RVMINRTTVIVSH---RLSLIRN-ANIIAVIQQGKIVE 601 (1236)
Q Consensus 568 ~~~~~~t~i~itH---~~~~~~~-ad~i~vl~~G~i~~ 601 (1236)
+ .+.|+|+++| +...+.. ||+ .+|++++
T Consensus 128 ~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 128 D--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp C--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred c--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 6 4667889885 7777765 777 5667665
No 131
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.89 E-value=1.1e-26 Score=252.01 Aligned_cols=164 Identities=15% Similarity=0.150 Sum_probs=117.4
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCCh-HHHhcceEEEcCCCCCChhh---
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQV-KWLRQQMGVVSQEPVLFSDT--- 1102 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~-~~lR~~i~~V~Qdp~LF~gT--- 1102 (1236)
.-|+||||+|++|+++||+||||||||||+++|.|++ | |+|.+ |+++.+.+. ...|+.++|++|++.+|..-
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 3699999999999999999999999999999999999 6 99999 888765432 34578899999998776532
Q ss_pred --------HHHHHH--HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHH-----HHHHccCCCEEEEecCCCCCCH
Q 040099 1103 --------IRANIA--EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAI-----ARAIVKEPKILLLDEATSALDI 1167 (1236)
Q Consensus 1103 --------IreNL~--~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaL-----ARALlr~p~ILlLDEaTSaLD~ 1167 (1236)
+++|.. ....+.+.+. .+....++ .+||||||||++| ||+++++|++++|||||+++|.
T Consensus 87 ~~~l~~~~~~~~~~g~~~~~i~~~l~---~~~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~ 160 (218)
T 1z6g_A 87 EDFLEYDNYANNFYGTLKSEYDKAKE---QNKICLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNT 160 (218)
T ss_dssp TCEEEEEEETTEEEEEEHHHHHHHHH---TTCEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCC
T ss_pred cchhhhhhcccccCCCcHHHHHHHHh---CCCcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCC
Confidence 222210 0011111111 12222222 5789999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeC
Q 040099 1168 ESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQ 1207 (1236)
Q Consensus 1168 ~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~ 1207 (1236)
+++..|++.+.+..+++| ++| +..||.|+|+++
T Consensus 161 ~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 161 ENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp CCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred CCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 999999999988776777 678 577899888765
No 132
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.87 E-value=1.3e-24 Score=258.11 Aligned_cols=195 Identities=16% Similarity=0.148 Sum_probs=158.5
Q ss_pred ccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCe---ecccCC----
Q 040099 1009 GEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV---EIQKLQ---- 1081 (1236)
Q Consensus 1009 g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~---di~~i~---- 1081 (1236)
..+++++|++.|+. ...+|+++ |+|++||++||+||||||||||+++|.|+++|+.|.|.++|. +++++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 45889999999973 24699999 999999999999999999999999999999999999999998 565542
Q ss_pred -hHHHhcceEEEcCC--CCCChhhHHHHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 040099 1082 -VKWLRQQMGVVSQE--PVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLL 1158 (1236)
Q Consensus 1082 -~~~lR~~i~~V~Qd--p~LF~gTIreNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlL 1158 (1236)
...+++.+++|+|+ |....-|+.+|+...+.... .........+ +...+||+|| ||++|| +++|++
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~---~~~~~v~~~l-d~l~~lS~g~-qrvslA---l~~p~~--- 275 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFR---DRGQHVLLIM-DSLTRYAMAQ-REIALA---IGEPPA--- 275 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHH---TTTCEEEEEE-ECHHHHHHHH-HHHHHH---TTCCCC---
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHH---hCCCCHHHHH-HhHHHHHHHH-HHHHHH---hCCCcc---
Confidence 45688999999995 34446699999864332211 0000111111 2356799999 999999 999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHcC-----CC-----eEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhh
Q 040099 1159 DEATSALDIESERVVQDALDQVMV-----DR-----TTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLIS 1221 (1236)
Q Consensus 1159 DEaTSaLD~~te~~I~~~L~~~~~-----~~-----TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~ 1221 (1236)
|++||+.+...+.+.+.++.+ |+ |++++||+++ ...||++++|.+|+|++.|++.++..
T Consensus 276 ---t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~~~~~~~ 344 (438)
T 2dpy_A 276 ---TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRRLAEAGH 344 (438)
T ss_dssp ---SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHHHHHTTC
T ss_pred ---cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCCHHHccC
Confidence 999999999999999988755 43 9999999999 67799999999999999999999865
No 133
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.87 E-value=8.5e-25 Score=259.78 Aligned_cols=195 Identities=15% Similarity=0.135 Sum_probs=156.9
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCe---ecCCCC----
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGV---NLKEFQ---- 455 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~---~~~~~~---- 455 (1236)
..++++|+++.|+. +..+|+++ |+|++||+++|+||||||||||+++|+|+++|+.|.|.++|+ ++.++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 45889999999962 35799999 999999999999999999999999999999999999999998 554431
Q ss_pred -HHHHhcceEEEccC-CCC-CchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 040099 456 -LKWIREKIGLVSQE-PVL-LSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRV 532 (1236)
Q Consensus 456 -~~~~r~~i~~v~Q~-~~l-~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRi 532 (1236)
...+++.++||+|+ ..+ ...|+.+|+.+.. +.... +...+..+ + +...+||+|| ||+
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a------e~~~~-~~~~v~~~-----------l-d~l~~lS~g~-qrv 266 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA------EDFRD-RGQHVLLI-----------M-DSLTRYAMAQ-REI 266 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH------HHHHT-TTCEEEEE-----------E-ECHHHHHHHH-HHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH------HHHHh-CCCCHHHH-----------H-HhHHHHHHHH-HHH
Confidence 34578899999995 333 3569999988631 11110 00111111 1 2245799999 999
Q ss_pred HHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc-----Cc-----eEEEEecCchhHhhcCeEEEEECCEEEEE
Q 040099 533 AIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI-----NR-----TTVIVSHRLSLIRNANIIAVIQQGKIVEK 602 (1236)
Q Consensus 533 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~-----~~-----t~i~itH~~~~~~~ad~i~vl~~G~i~~~ 602 (1236)
+|| +.+|++ |++||+.+...+.+.+.++.+ |+ |++++||+++ ...||++++|.+|+|+.+
T Consensus 267 slA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~ 336 (438)
T 2dpy_A 267 ALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLS 336 (438)
T ss_dssp HHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEEC
T ss_pred HHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEe
Confidence 999 899998 999999999999999988854 53 9999999999 667999999999999999
Q ss_pred eCcccccc
Q 040099 603 GTHSELLE 610 (1236)
Q Consensus 603 g~~~~l~~ 610 (1236)
|++.++..
T Consensus 337 ~~~~~~~~ 344 (438)
T 2dpy_A 337 RRLAEAGH 344 (438)
T ss_dssp HHHHHTTC
T ss_pred CCHHHccC
Confidence 99888754
No 134
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.86 E-value=2.5e-24 Score=252.27 Aligned_cols=167 Identities=18% Similarity=0.173 Sum_probs=131.7
Q ss_pred CccccceeEEecCCc--------------------EEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHH
Q 040099 400 EQILNGFCLLIPNGT--------------------IAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWI 459 (1236)
Q Consensus 400 ~~~l~~i~~~i~~g~--------------------~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~ 459 (1236)
+.+|++|||++++|+ ++||+||||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 358999999999999 99999999999999999999999999999999997653
Q ss_pred hcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChH--HHHHHHHHHH
Q 040099 460 REKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGG--QKQRVAIARA 537 (1236)
Q Consensus 460 r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgG--qkqRiaiARa 537 (1236)
| .++++|++...+.|++||+.++.+. +.+.+.++..++.+ ++..+ . |||| ||||++||||
T Consensus 109 ~--~~~v~q~~~~~~ltv~D~~g~~~~~---~~~~~~L~~~~L~~--------~~~~~----~-lS~G~~~kqrv~la~a 170 (413)
T 1tq4_A 109 M--ERHPYKHPNIPNVVFWDLPGIGSTN---FPPDTYLEKMKFYE--------YDFFI----I-ISATRFKKNDIDIAKA 170 (413)
T ss_dssp C--CCEEEECSSCTTEEEEECCCGGGSS---CCHHHHHHHTTGGG--------CSEEE----E-EESSCCCHHHHHHHHH
T ss_pred e--eEEeccccccCCeeehHhhcccchH---HHHHHHHHHcCCCc--------cCCeE----E-eCCCCccHHHHHHHHH
Confidence 1 2889999754466999998877542 23445555554332 12222 2 8999 9999999999
Q ss_pred hcC----------CCCEEEEeCcCCCCCHHHHHHHHHHHHHHc------c----CceEEEEecCchh--Hhh-cCeE
Q 040099 538 MIK----------DPRILLLDEATSALDSESGRMVQEALDRVM------I----NRTTVIVSHRLSL--IRN-ANII 591 (1236)
Q Consensus 538 l~~----------~p~ililDE~ts~lD~~~~~~i~~~l~~~~------~----~~t~i~itH~~~~--~~~-ad~i 591 (1236)
|.+ +|++++|||||++||+.++..+.+.++++. . .+++++.||.++. ++. ||+|
T Consensus 171 L~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 171 ISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999 999999999999999999999988887763 1 2567778998876 654 7776
No 135
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.84 E-value=8.7e-23 Score=231.30 Aligned_cols=175 Identities=16% Similarity=0.211 Sum_probs=127.3
Q ss_pred ccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCC----HHHH--hcceEEEccCCC-CCc-
Q 040099 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQ----LKWI--REKIGLVSQEPV-LLS- 474 (1236)
Q Consensus 403 l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~----~~~~--r~~i~~v~Q~~~-l~~- 474 (1236)
++++||++++|++++|||||||||||+++.|+|++.|++|+|.++|.|+.... ...+ |.+|+|++|++. +++
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 35688899999999999999999999999999999999999999999876542 1233 457999999987 765
Q ss_pred hhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCC--EEEEeCcCC
Q 040099 475 SSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPR--ILLLDEATS 552 (1236)
Q Consensus 475 ~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~--ililDE~ts 552 (1236)
.|++||+.++.....+ ...++.. |..........+|| |||++||||+..+|+ +|+|| ||+
T Consensus 170 ~~v~e~l~~~~~~~~d------------~~lldt~--gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pts 231 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYD------------VVLCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNT 231 (302)
T ss_dssp HHHHHHHHHHHHTTCS------------EEEECCC--CCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGG
T ss_pred HHHHHHHHHHHHcCCc------------chHHhcC--CCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCC
Confidence 4999999864211000 0011111 22222222233588 999999999999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHHHccCceEEEEec---------CchhHhh-cCeEEEEECCEE
Q 040099 553 ALDSESGRMVQEALDRVMINRTTVIVSH---------RLSLIRN-ANIIAVIQQGKI 599 (1236)
Q Consensus 553 ~lD~~~~~~i~~~l~~~~~~~t~i~itH---------~~~~~~~-ad~i~vl~~G~i 599 (1236)
++|+.+.. +.+.+ ..+.|+|++|| .++.+.. .+.|.++..|+.
T Consensus 232 glD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 232 GLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 99998653 22221 23789999999 3444433 789999999964
No 136
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.83 E-value=2.2e-23 Score=244.28 Aligned_cols=163 Identities=18% Similarity=0.212 Sum_probs=124.7
Q ss_pred ccccceeEEecCCC--------------------EEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHh
Q 040099 1027 EVFRDLCLTIPPGK--------------------TIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLR 1086 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge--------------------~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR 1086 (1236)
.+|++|||+|++|| .+||+||||||||||+++|.|+++|++|+|.++|.++. |
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 58999999999999 99999999999999999999999999999999998763 2
Q ss_pred cceEEEcCCCCCChhhHHHHHHH---HhhhchHHHhhh-hchhhhhcCCCCCCChh--HHHHHHHHHHHcc---------
Q 040099 1087 QQMGVVSQEPVLFSDTIRANIAE---MANANGFISGLQ-EGYDTLVGERGVQLSGG--QKQRVAIARAIVK--------- 1151 (1236)
Q Consensus 1087 ~~i~~V~Qdp~LF~gTIreNL~~---~a~~~~~i~~lp-~Gldt~vge~G~~LSGG--QrQRlaLARALlr--------- 1151 (1236)
.++++|++....-|++||+.- ...+.++++.+. ..++..+ .|||| ||||++|||||.+
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~-----~lS~G~~~kqrv~la~aL~~~~~p~~lV~ 182 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFI-----IISATRFKKNDIDIAKAISMMKKEFYFVR 182 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEE-----EEESSCCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred --eEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeE-----EeCCCCccHHHHHHHHHHHhcCCCeEEEE
Confidence 278999986546688777520 111222332221 0112111 28999 9999999999999
Q ss_pred -CCCEEEEecCCCCCCHHHHHHHHHHHHHHc------C----CCeEEEEecCchh--hhh-cCEEE
Q 040099 1152 -EPKILLLDEATSALDIESERVVQDALDQVM------V----DRTTLVVAHRLST--IKN-AHLIA 1203 (1236)
Q Consensus 1152 -~p~ILlLDEaTSaLD~~te~~I~~~L~~~~------~----~~TvI~IaHRl~t--i~~-aD~I~ 1203 (1236)
+|++|+|||||++||+.+...+.+.|++.. . ..++++-||.++. +.. ||+|.
T Consensus 183 tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 183 TKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp CCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred ecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 999999999999999999999999888763 1 2456677999886 655 77774
No 137
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.83 E-value=2.8e-21 Score=218.91 Aligned_cols=171 Identities=16% Similarity=0.238 Sum_probs=126.1
Q ss_pred ccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCC----hHHH--hcceEEEcCCCC-CCh-
Q 040099 1029 FRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ----VKWL--RQQMGVVSQEPV-LFS- 1100 (1236)
Q Consensus 1029 L~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~----~~~l--R~~i~~V~Qdp~-LF~- 1100 (1236)
++++||++++|+.++|||||||||||+++.|.|++.|++|+|.++|.|+.... +..+ |..+++|+|++. ++.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 45789999999999999999999999999999999999999999999986543 2334 457999999997 665
Q ss_pred hhHHHHHHHHh--hhc-hHHHhh--hhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC--EEEEecCCCCCCHHHHHHH
Q 040099 1101 DTIRANIAEMA--NAN-GFISGL--QEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK--ILLLDEATSALDIESERVV 1173 (1236)
Q Consensus 1101 gTIreNL~~~a--~~~-~~i~~l--p~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~--ILlLDEaTSaLD~~te~~I 1173 (1236)
.|++||+.... +.. .+++.. .+-.+..+ ..|| |||++||||+..+|+ +|+|| ||+++|+.+..
T Consensus 170 ~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~-- 239 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA-- 239 (302)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHH----HHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH--
T ss_pred HHHHHHHHHHHHcCCcchHHhcCCCCcchhHHH----HHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH--
Confidence 59999986321 110 011110 01111222 2488 999999999999999 99999 99999998653
Q ss_pred HHHHHHHcCCCeEEEEec---------Cchhhhh-cCEEEEEeCCEEE
Q 040099 1174 QDALDQVMVDRTTLVVAH---------RLSTIKN-AHLIAVVSQGMIV 1211 (1236)
Q Consensus 1174 ~~~L~~~~~~~TvI~IaH---------Rl~ti~~-aD~I~Vl~~G~Iv 1211 (1236)
+.+.+ ..+.|+|++|| .++.+.. .+.|.++..|+.+
T Consensus 240 -~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 240 -REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp -HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred -HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 22332 23789999999 4444433 6899999999653
No 138
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.83 E-value=1.8e-23 Score=238.12 Aligned_cols=201 Identities=14% Similarity=0.170 Sum_probs=140.6
Q ss_pred HHHHHHHHHHhccCCCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEE----------------------
Q 040099 352 QAAAFKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLL---------------------- 409 (1236)
Q Consensus 352 ~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~---------------------- 409 (1236)
+.+..|+.+.+..+.+.++. .......+.|+++||++.|. ++++++++.
T Consensus 15 r~~~~~l~~~~~~~~~~~~~----~~l~~~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 85 (312)
T 3aez_A 15 RRQWRALRMSTPLALTEEEL----VGLRGLGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNP 85 (312)
T ss_dssp HHHHHGGGTTCCCCCCHHHH----HTTCCTTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCS
T ss_pred HHHHHHHHhcCCCCCCHHHH----HhccCCCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhccccccc
Confidence 34556666555444332211 12334556799999999993 577887775
Q ss_pred -ecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCC---
Q 040099 410 -IPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGK--- 485 (1236)
Q Consensus 410 -i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~--- 485 (1236)
+++|+++||+||||||||||+++|.|+++|+.|. ++++||+|++++++.|++||+.+..
T Consensus 86 ~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g 148 (312)
T 3aez_A 86 DRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKG 148 (312)
T ss_dssp SSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTT
T ss_pred CCCCCEEEEEECCCCchHHHHHHHHHhhccccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcC
Confidence 8999999999999999999999999999998763 4799999999999889999997632
Q ss_pred -CCC-CHHHHHHHHHHhccHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHH
Q 040099 486 -THA-TKEEIQAAAEAANASHFIKNLPQGLD-TNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMV 562 (1236)
Q Consensus 486 -~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i 562 (1236)
+.. ..+.+. +++..+..|.. ..+ ..|||||+||+++|||++.+|+|||||||++.+|+..
T Consensus 149 ~~~~~d~~~~~---------~~L~~l~~~~~~~~~----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~---- 211 (312)
T 3aez_A 149 FPESYNRRALM---------RFVTSVKSGSDYACA----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT---- 211 (312)
T ss_dssp SGGGBCHHHHH---------HHHHHHHTTCSCEEE----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS----
T ss_pred CChHHHHHHHH---------HHHHHhCCCcccCCc----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch----
Confidence 211 122333 33333333433 333 4799999999999999999999999999999998622
Q ss_pred HHHHHHHccCceEEEEecCchhHh--hcCeEEEEECCE
Q 040099 563 QEALDRVMINRTTVIVSHRLSLIR--NANIIAVIQQGK 598 (1236)
Q Consensus 563 ~~~l~~~~~~~t~i~itH~~~~~~--~ad~i~vl~~G~ 598 (1236)
..+.++. ..+|+|+|+.+... ..+|.+.+.+|+
T Consensus 212 -~~l~~~~--D~~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 212 -LMVSDLF--DFSLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp -CCGGGGC--SEEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred -HHHHHhc--CcEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 1122221 24577777776542 356655555543
No 139
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.82 E-value=2.6e-20 Score=215.14 Aligned_cols=82 Identities=22% Similarity=0.246 Sum_probs=75.9
Q ss_pred CCChHHHHHHHHHHHhc---------CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEE
Q 040099 523 QLSGGQKQRVAIARAMI---------KDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAV 593 (1236)
Q Consensus 523 ~LSgGqkqRiaiARal~---------~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~v 593 (1236)
.||||||||++|||+|+ .+|+|||||||||+||+.....+.+.+.++. .|+|++|| ++. .||++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 59999999999999999 8999999999999999999999999998864 79999999 444 8999999
Q ss_pred EECCEEEEEeCccccc
Q 040099 594 IQQGKIVEKGTHSELL 609 (1236)
Q Consensus 594 l~~G~i~~~g~~~~l~ 609 (1236)
|++|++++.|+++++.
T Consensus 340 l~~G~i~~~g~~~~~~ 355 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQA 355 (359)
T ss_dssp EETTEEEECCCTTTSC
T ss_pred EECCEEEecCCHHHHh
Confidence 9999999999998873
No 140
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.82 E-value=1.7e-22 Score=225.49 Aligned_cols=147 Identities=16% Similarity=0.160 Sum_probs=96.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCch-hHHHHHhcCCCCCC---H
Q 040099 415 IAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHAT---K 490 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~~ni~~g~~~~~---~ 490 (1236)
.+|||||||||||||+|+|+|++.|++|+|.++|.++.. ...++.++|++|++.++.. ||.||+.||..... .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 589999999999999999999999999999999988743 2345789999999988765 99999999864322 2
Q ss_pred HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc
Q 040099 491 EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM 570 (1236)
Q Consensus 491 ~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~ 570 (1236)
+.+.+... .++...++ ..||||||||+++|||++. +++|||||++||+... .+ ++.+.
T Consensus 81 ~~i~~~~~----~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~-~~---l~~L~ 138 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL-EF---MKHLS 138 (270)
T ss_dssp HHHHHHHH----HHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH-HH---HHHHH
T ss_pred HHHHHHHH----HHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH-HH---HHHHH
Confidence 33333332 23333332 2699999999999999886 9999999999999873 33 33343
Q ss_pred cCceEEEEecCchhHh
Q 040099 571 INRTTVIVSHRLSLIR 586 (1236)
Q Consensus 571 ~~~t~i~itH~~~~~~ 586 (1236)
+..++|+|.|+.+.+.
T Consensus 139 ~~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 139 KVVNIIPVIAKADTMT 154 (270)
T ss_dssp TTSEEEEEETTGGGSC
T ss_pred hcCcEEEEEeccccCC
Confidence 3489999999887653
No 141
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.82 E-value=7.4e-23 Score=232.97 Aligned_cols=172 Identities=19% Similarity=0.238 Sum_probs=129.8
Q ss_pred CccccEEEeEEEEECCCCCCcccccceeEE-----------------------ecCCCEEEEEcCCCCChHHHHHHHhcc
Q 040099 1006 NVMGEVQFLRVSFKYPTRPHIEVFRDLCLT-----------------------IPPGKTIALVGESGSGKSTVISLLQRF 1062 (1236)
Q Consensus 1006 ~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~-----------------------I~~Ge~vaIVG~SGSGKSTL~~lL~r~ 1062 (1236)
...+.|+++||++.|. ++++++++. +++|+.+||+||||||||||+++|.|+
T Consensus 39 ~~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 39 GLGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CTTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 4456799999999994 367777765 899999999999999999999999999
Q ss_pred cCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHH-----------hhhchHHHhhhhchhhhhcCC
Q 040099 1063 YDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEM-----------ANANGFISGLQEGYDTLVGER 1131 (1236)
Q Consensus 1063 ~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~-----------a~~~~~i~~lp~Gldt~vge~ 1131 (1236)
++|..|. +++++|+||+++++.|++||+... ..+.+++..+..|.. ...
T Consensus 114 l~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~~~---~~~ 173 (312)
T 3aez_A 114 LARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVKSGSD---YAC 173 (312)
T ss_dssp HHTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTTCS---CEE
T ss_pred ccccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCCcc---cCC
Confidence 9998663 579999999999988999997411 122334444443332 011
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh--hcCEEEEEeCCE
Q 040099 1132 GVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIK--NAHLIAVVSQGM 1209 (1236)
Q Consensus 1132 G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~--~aD~I~Vl~~G~ 1209 (1236)
...|||||+||+++|||++.+|+|||||||++.+|+.. ..+.+.+ + .+|+|.|..+... ..+|.+.+.+|+
T Consensus 174 ~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~-D-~~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 174 APVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF-D-FSLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC-S-EEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred cccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc-C-cEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 24799999999999999999999999999999998632 1233332 3 4577888777652 366766665543
No 142
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.82 E-value=6.8e-22 Score=227.75 Aligned_cols=173 Identities=16% Similarity=0.209 Sum_probs=127.7
Q ss_pred cceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCC----HHHH--hcceEEEccCCC-CCc-h
Q 040099 404 NGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQ----LKWI--REKIGLVSQEPV-LLS-S 475 (1236)
Q Consensus 404 ~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~----~~~~--r~~i~~v~Q~~~-l~~-~ 475 (1236)
+.+||++++|++++|||||||||||+++.|+|++.|++|+|.++|.|+.... ...+ |..|+|++|++. +++ .
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3578899999999999999999999999999999999999999999886532 1223 467999999987 665 5
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCC--EEEEeCcCCC
Q 040099 476 SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPR--ILLLDEATSA 553 (1236)
Q Consensus 476 ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~--ililDE~ts~ 553 (1236)
|++||+.++.....+ . ..++.. |..........+|| |||++||||+..+|+ +|+|| ||++
T Consensus 228 tv~e~l~~~~~~~~d---------~---~lldt~--Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttg 289 (359)
T 2og2_A 228 VLSKAVKRGKEEGYD---------V---VLCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 289 (359)
T ss_dssp HHHHHHHHHHHTTCS---------E---EEEECC--CCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred hHHHHHHHHHhCCCH---------H---HHHHhc--CCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence 999999875211000 0 011111 22222222233588 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHHHccCceEEEEec---------CchhHh-hcCeEEEEECCE
Q 040099 554 LDSESGRMVQEALDRVMINRTTVIVSH---------RLSLIR-NANIIAVIQQGK 598 (1236)
Q Consensus 554 lD~~~~~~i~~~l~~~~~~~t~i~itH---------~~~~~~-~ad~i~vl~~G~ 598 (1236)
+|+.+... .+.+ ..+.|+|++|| .++.+. ..+.|..+..|+
T Consensus 290 lD~~~~~~---~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge 340 (359)
T 2og2_A 290 LNMLPQAR---EFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGE 340 (359)
T ss_dssp GGGHHHHH---HHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSS
T ss_pred CCHHHHHH---HHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCC
Confidence 99986532 2221 23789999999 344443 378999999986
No 143
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.82 E-value=4.1e-20 Score=213.41 Aligned_cols=82 Identities=24% Similarity=0.252 Sum_probs=76.4
Q ss_pred CCChhHHHHHHHHHHHc---------cCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEE
Q 040099 1134 QLSGGQKQRVAIARAIV---------KEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAV 1204 (1236)
Q Consensus 1134 ~LSGGQrQRlaLARALl---------r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~V 1204 (1236)
.||||||||++|||+|. .+|+|||||||||+||+.....+.+.|++.. .|+|++|| ++. .||++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 69999999999999999 8999999999999999999999999998863 79999999 454 8999999
Q ss_pred EeCCEEEEecChhHHh
Q 040099 1205 VSQGMIVEKGSHESLI 1220 (1236)
Q Consensus 1205 l~~G~Ive~Gt~~eLl 1220 (1236)
|++|+|++.|+|+++.
T Consensus 340 l~~G~i~~~g~~~~~~ 355 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQA 355 (359)
T ss_dssp EETTEEEECCCTTTSC
T ss_pred EECCEEEecCCHHHHh
Confidence 9999999999999883
No 144
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.81 E-value=1.4e-22 Score=218.15 Aligned_cols=168 Identities=17% Similarity=0.142 Sum_probs=111.0
Q ss_pred CccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCch-hHH
Q 040099 400 EQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIR 478 (1236)
Q Consensus 400 ~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~ 478 (1236)
.++++| .+|++||+++|+||||||||||+++|+|+++ .|.+++.....-+....++.++|++|++.+|.. |+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 468888 7999999999999999999999999999996 345554221111112235679999999987764 777
Q ss_pred HHHhc-----CC-C--CCCHHHHHHHHH----------HhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 040099 479 DNIAY-----GK-T--HATKEEIQAAAE----------AANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIK 540 (1236)
Q Consensus 479 ~ni~~-----g~-~--~~~~~~~~~~~~----------~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~ 540 (1236)
+|+.. ++ . ..+.+++.+.++ ..++.++....|. .|| ||+.
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----------~lS-----------~l~~ 140 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPE-----------AVT-----------VFLA 140 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTT-----------SEE-----------EEEE
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCC-----------cEE-----------EEEE
Confidence 77632 10 0 112333333332 2233333333332 344 8999
Q ss_pred CCCEEEEeCcCCCC----CHHHHHHHHHHHHHHc--cCceEEEEecCchhHhh-cCeEEEEE
Q 040099 541 DPRILLLDEATSAL----DSESGRMVQEALDRVM--INRTTVIVSHRLSLIRN-ANIIAVIQ 595 (1236)
Q Consensus 541 ~p~ililDE~ts~l----D~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-ad~i~vl~ 595 (1236)
+|++++|||||+++ |+...+.+.+.++++. .+.|+|+|||+++.+.. ||+|++|.
T Consensus 141 ~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 141 PPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp CSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 99999999999998 7788899999998875 37899999999999865 99999984
No 145
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.81 E-value=2.2e-20 Score=215.13 Aligned_cols=169 Identities=15% Similarity=0.233 Sum_probs=126.0
Q ss_pred cceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCC----hHHH--hcceEEEcCCCC-CC-hh
Q 040099 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ----VKWL--RQQMGVVSQEPV-LF-SD 1101 (1236)
Q Consensus 1030 ~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~----~~~l--R~~i~~V~Qdp~-LF-~g 1101 (1236)
+++||++++|+.++|||||||||||+++.|.|++.|++|+|.++|.|+.... +..+ |..+++|+|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 4578899999999999999999999999999999999999999999986542 2333 567999999987 65 45
Q ss_pred hHHHHHHHHh--hhc-hHHHhh--hhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC--EEEEecCCCCCCHHHHHHHH
Q 040099 1102 TIRANIAEMA--NAN-GFISGL--QEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK--ILLLDEATSALDIESERVVQ 1174 (1236)
Q Consensus 1102 TIreNL~~~a--~~~-~~i~~l--p~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~--ILlLDEaTSaLD~~te~~I~ 1174 (1236)
|+++|+.... +.. .+++.. .+-.+..+ ..|| |||++||||+..+|+ +|+|| ||+++|+.+..
T Consensus 228 tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~--- 296 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA--- 296 (359)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCCSSCCHHHH----HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH---
T ss_pred hHHHHHHHHHhCCCHHHHHHhcCCChhhhhHH----HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH---
Confidence 9999986321 111 011110 00011122 2488 999999999999999 99999 99999998663
Q ss_pred HHHHHHcCCCeEEEEec---------Cchhhh-hcCEEEEEeCCEE
Q 040099 1175 DALDQVMVDRTTLVVAH---------RLSTIK-NAHLIAVVSQGMI 1210 (1236)
Q Consensus 1175 ~~L~~~~~~~TvI~IaH---------Rl~ti~-~aD~I~Vl~~G~I 1210 (1236)
+.+.+ ..+.|+|++|| .++.+. ..+.|..+..|+.
T Consensus 297 ~~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 297 REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HHHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 22322 23789999999 344443 3679999999964
No 146
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.81 E-value=1.1e-22 Score=210.51 Aligned_cols=111 Identities=16% Similarity=0.226 Sum_probs=88.1
Q ss_pred CEEEEEcCCCCChHHHHHHHhcccCCC---CcEEEECCeecccCC---hHHHh-cceE----EEcCCCCCChhhHHHHHH
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFYDPS---SGHITLDGVEIQKLQ---VKWLR-QQMG----VVSQEPVLFSDTIRANIA 1108 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~~~~---~G~I~idG~di~~i~---~~~lR-~~i~----~V~Qdp~LF~gTIreNL~ 1108 (1236)
++++|||+||||||||+++|.|+|+|+ .|.|++||.++.+++ .+.+| ++++ +++|++.+|-..-.+.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~~~~~~~- 81 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIRRVSEEE- 81 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEEEECCHHH-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEEecCChhh-
Confidence 689999999999999999999999998 899999999988887 77888 5788 89999998811000111
Q ss_pred HHhhhchHHHh-hhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEE
Q 040099 1109 EMANANGFISG-LQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKIL 1156 (1236)
Q Consensus 1109 ~~a~~~~~i~~-lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~IL 1156 (1236)
.+++++++.. +| ||||.++|+ |||||||||+||||++++|+|.
T Consensus 82 -~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 82 -GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 5688999999 99 999999995 9999999999999999999873
No 147
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.79 E-value=8.2e-21 Score=218.98 Aligned_cols=195 Identities=16% Similarity=0.191 Sum_probs=148.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCC-------CCH
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKE-------FQL 456 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~-------~~~ 456 (1236)
.++.+++++.|+. +..+|+++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|++.++ ...
T Consensus 45 ~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 45 PLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp STTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 4788999999962 35799999 9999999999999999999999999999999999999998875321 122
Q ss_pred HHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCcccc-ccCCCCCCChHHHHHHHHH
Q 040099 457 KWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTN-VGEHGIQLSGGQKQRVAIA 535 (1236)
Q Consensus 457 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~-~g~~g~~LSgGqkqRiaiA 535 (1236)
..+++.+.+++|... + ..+++..+.....+.++... .|.+.. +-+...+||+|| ||+++|
T Consensus 122 ~~~~~~v~~~~~~~~----~------------~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la 182 (347)
T 2obl_A 122 STLSKCVLVVTTSDR----P------------ALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA 182 (347)
T ss_dssp HHHTTEEEEEECTTS----C------------HHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH
T ss_pred hhhhceEEEEECCCC----C------------HHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH
Confidence 335556777776421 1 12333333333334444332 233321 113456899999 999999
Q ss_pred HHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc---Cc-----eEEEEecCchhHhhcCeEEEEECCEEEEEeCccc
Q 040099 536 RAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI---NR-----TTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSE 607 (1236)
Q Consensus 536 Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~---~~-----t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~ 607 (1236)
+.+|++ |++||+.....+.+.++++.+ |. |++++||+++ -..||++++|.+|+|+.+|+.++
T Consensus 183 ---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~ 252 (347)
T 2obl_A 183 ---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAE 252 (347)
T ss_dssp ---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHT
T ss_pred ---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHH
Confidence 688888 999999999999999998853 66 8999999998 45599999999999999998877
Q ss_pred ccc
Q 040099 608 LLE 610 (1236)
Q Consensus 608 l~~ 610 (1236)
+..
T Consensus 253 ~~~ 255 (347)
T 2obl_A 253 ENH 255 (347)
T ss_dssp TTC
T ss_pred cCC
Confidence 643
No 148
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.78 E-value=1.6e-22 Score=224.54 Aligned_cols=174 Identities=18% Similarity=0.197 Sum_probs=142.1
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CcEEEECCeecCCCCHHHHhcceEEEcc-----CCCCCc
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQ-AGEVLIDGVNLKEFQLKWIREKIGLVSQ-----EPVLLS 474 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~-~G~i~~~g~~~~~~~~~~~r~~i~~v~Q-----~~~l~~ 474 (1236)
++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... +..+++++| ++..|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~~~gl~~~~l~ 88 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQREVGEDTKSFA 88 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEEEBTTTBSCHH
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHHHhCCCHHHHH
Confidence 4899999 9999999999999999999999999999998 999999998876442 345678888 556677
Q ss_pred hhHHHHHhcCCCCC-------CHHHHHHHHHHhcc-----------------HHHH------------HhCCCCcccccc
Q 040099 475 SSIRDNIAYGKTHA-------TKEEIQAAAEAANA-----------------SHFI------------KNLPQGLDTNVG 518 (1236)
Q Consensus 475 ~ti~~ni~~g~~~~-------~~~~~~~~~~~~~~-----------------~~~i------------~~l~~g~~t~~g 518 (1236)
.+++.+++.. |+. +.+.+..+++.+.. +..+ ..+++++++.++
T Consensus 89 ~~la~aL~~~-p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~~~~~~~l~~~l~~vi~ 167 (261)
T 2eyu_A 89 DALRAALRED-PDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 167 (261)
T ss_dssp HHHHHHHHHC-CSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGHHHHHHHHHHHEEEEEE
T ss_pred HHHHHHHhhC-CCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccccchHHHHHHHHhhEEEE
Confidence 8999999873 433 56655555544321 1111 134568999999
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCCE--EEEeCcCCCCCHHH---------HHHHHHHHHHHccCceEEEEecCch
Q 040099 519 EHGIQLSGGQKQRVAIARAMIKDPRI--LLLDEATSALDSES---------GRMVQEALDRVMINRTTVIVSHRLS 583 (1236)
Q Consensus 519 ~~g~~LSgGqkqRiaiARal~~~p~i--lilDE~ts~lD~~~---------~~~i~~~l~~~~~~~t~i~itH~~~ 583 (1236)
+++..+|+| ||+++||+++.+|++ +|+||+|+++|... +..++++++.+.+|+|.+.++||++
T Consensus 168 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~ 241 (261)
T 2eyu_A 168 QRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEAS 241 (261)
T ss_dssp EEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHHHHHHC
T ss_pred EEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHHHHHHh
Confidence 999999999 999999999999999 99999999999874 3467888888889999999999986
No 149
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.78 E-value=3.7e-22 Score=214.89 Aligned_cols=174 Identities=18% Similarity=0.160 Sum_probs=109.7
Q ss_pred cccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccC-ChHHHhcceEEEcCCCCCChh-hH
Q 040099 1026 IEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKL-QVKWLRQQMGVVSQEPVLFSD-TI 1103 (1236)
Q Consensus 1026 ~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i-~~~~lR~~i~~V~Qdp~LF~g-TI 1103 (1236)
.++++| .+|++||.+||+||||||||||+++|.|+++ .|.+++ ++... +....|+.++|++|++.+|.. |+
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~-~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 81 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSV-SATTRAPRPGEVDGVDYHFIDPTRFQQLID 81 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECC-CEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcc-cccccCCcccccCCCeeEecCHHHHHHHHh
Confidence 468999 7999999999999999999999999999996 355554 22221 112346789999999987754 55
Q ss_pred HHHHHHHhhhch--HHHhhhh-chhhhhcCC-----CCCCChhHHHHHHHHH---HHccCCCEEEEecCCCCC----CHH
Q 040099 1104 RANIAEMANANG--FISGLQE-GYDTLVGER-----GVQLSGGQKQRVAIAR---AIVKEPKILLLDEATSAL----DIE 1168 (1236)
Q Consensus 1104 reNL~~~a~~~~--~i~~lp~-Gldt~vge~-----G~~LSGGQrQRlaLAR---ALlr~p~ILlLDEaTSaL----D~~ 1168 (1236)
.+|+.+.....+ .....+. .....+.+. ...+.|.+.++-..++ ||+.+|++++|||||+++ |+.
T Consensus 82 ~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~ 161 (207)
T 1znw_A 82 QGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADV 161 (207)
T ss_dssp TTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHH
T ss_pred cCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHH
Confidence 555421100000 0000000 000111110 0235566655555555 789999999999999998 677
Q ss_pred HHHHHHHHHHHHc--CCCeEEEEecCchhhhh-cCEEEEEe
Q 040099 1169 SERVVQDALDQVM--VDRTTLVVAHRLSTIKN-AHLIAVVS 1206 (1236)
Q Consensus 1169 te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-aD~I~Vl~ 1206 (1236)
+.+.+++.+++.. .+.|+|+|+|+++.+.. ||+|++|.
T Consensus 162 ~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 162 IQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 8889999888764 37899999999999865 99999984
No 150
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.78 E-value=1.2e-21 Score=202.87 Aligned_cols=111 Identities=21% Similarity=0.230 Sum_probs=88.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCeecCCCC---HHHHh-cceE----EEccCCCCCchhHHHHHh
Q 040099 414 TIAALVGTSGSGKSTVISLIQRFYDPQ---AGEVLIDGVNLKEFQ---LKWIR-EKIG----LVSQEPVLLSSSIRDNIA 482 (1236)
Q Consensus 414 ~~~~ivG~sGsGKSTl~~ll~~~~~~~---~G~i~~~g~~~~~~~---~~~~r-~~i~----~v~Q~~~l~~~ti~~ni~ 482 (1236)
++++|||+||||||||+++|+|+|+|+ .|.|.+||.++.+++ .+.+| +++| +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999988776 66777 4788 899999887 111
Q ss_pred cCCCCCCHHHHHHHHHHhccHHHHHh-CCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEE
Q 040099 483 YGKTHATKEEIQAAAEAANASHFIKN-LPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRIL 545 (1236)
Q Consensus 483 ~g~~~~~~~~~~~~~~~~~~~~~i~~-l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~il 545 (1236)
+ .+ +. .+++++++.+ +| |+||.++|+ |||||||||+||||++++|++.
T Consensus 77 -~----~~-~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -V----SE-EE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -C----CH-HH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -C----Ch-hh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1 11 21 6789999999 99 999999995 9999999999999999999873
No 151
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.78 E-value=2.5e-20 Score=207.02 Aligned_cols=131 Identities=23% Similarity=0.334 Sum_probs=102.8
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCC-CcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHH
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPS-SGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRA 1105 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~-~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIre 1105 (1236)
++|+++| +++|+.++|+||||||||||+++|.|+++|+ +|+|.++|.++..+. +..+++++|+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~---------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQR---------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEE----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHH----------
Confidence 3899999 9999999999999999999999999999998 999999998875332 2233444442
Q ss_pred HHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCe
Q 040099 1106 NIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRT 1185 (1236)
Q Consensus 1106 NL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~T 1185 (1236)
+-|++ ...| |++|||||..+|++++||||| |+++...+ ++....+.|
T Consensus 79 ---------------~~gl~------~~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~---l~~~~~g~~ 125 (261)
T 2eyu_A 79 ---------------EVGED------TKSF------ADALRAALREDPDVIFVGEMR---DLETVETA---LRAAETGHL 125 (261)
T ss_dssp ---------------EBTTT------BSCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHH---HHHHHTTCE
T ss_pred ---------------HhCCC------HHHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH---HHHHccCCE
Confidence 11221 1223 899999999999999999999 99886544 444446899
Q ss_pred EEEEecCchhhhhcCEEEEEe
Q 040099 1186 TLVVAHRLSTIKNAHLIAVVS 1206 (1236)
Q Consensus 1186 vI~IaHRl~ti~~aD~I~Vl~ 1206 (1236)
+++++|+.+....|||+++|.
T Consensus 126 vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 126 VFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp EEEEECCSSHHHHHHHHHHTS
T ss_pred EEEEeCcchHHHHHHHHhhhc
Confidence 999999998777788876654
No 152
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.77 E-value=6.7e-22 Score=208.48 Aligned_cols=158 Identities=18% Similarity=0.228 Sum_probs=122.7
Q ss_pred CCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHHhhhchHHH
Q 040099 1039 GKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFIS 1118 (1236)
Q Consensus 1039 Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~~~~i~ 1118 (1236)
||+++|+||||||||||+++|.|+++ ++| |.+||.++.+++ .+++++++++|+. .++ ++|+. .. .+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~---~~-~~-- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLS---RV-GL-- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEE---EC-CC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhh---cc-cc--
Confidence 79999999999999999999999999 999 999999987654 4789999999986 443 23331 11 01
Q ss_pred hhhh-chhhhhcCCCCCCChhHHHHH-HHHH---HHccCCCEEEEec--CCCCCCHHHHHHHHHHHHHHcCCCeEE----
Q 040099 1119 GLQE-GYDTLVGERGVQLSGGQKQRV-AIAR---AIVKEPKILLLDE--ATSALDIESERVVQDALDQVMVDRTTL---- 1187 (1236)
Q Consensus 1119 ~lp~-Gldt~vge~G~~LSGGQrQRl-aLAR---ALlr~p~ILlLDE--aTSaLD~~te~~I~~~L~~~~~~~TvI---- 1187 (1236)
..++ ..+..+++.+..+|+|||+++ +++| |++++|+|||||| ||..+|....+.+.+.++. ..|+|
T Consensus 67 ~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti 143 (189)
T 2i3b_A 67 EPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTI 143 (189)
T ss_dssp CCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEEC
T ss_pred cCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEe
Confidence 0011 122367888889999999999 5666 7899999999999 8999999988888888864 34555
Q ss_pred EEecCchhhhhcCEEEEEeCCEEEEec
Q 040099 1188 VVAHRLSTIKNAHLIAVVSQGMIVEKG 1214 (1236)
Q Consensus 1188 ~IaHRl~ti~~aD~I~Vl~~G~Ive~G 1214 (1236)
.|+||.+ ....|+|..+++|+|++..
T Consensus 144 ~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 144 PVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp CCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred ecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 3449986 4567888888999998864
No 153
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.77 E-value=4.1e-22 Score=232.86 Aligned_cols=175 Identities=18% Similarity=0.216 Sum_probs=144.4
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CcEEEECCeecCCCCHHHHhcceEEEcc-----CCCCCc
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQ-AGEVLIDGVNLKEFQLKWIREKIGLVSQ-----EPVLLS 474 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~-~G~i~~~g~~~~~~~~~~~r~~i~~v~Q-----~~~l~~ 474 (1236)
++|++++ +++|++++|+|||||||||++++|+|+++|+ +|+|.+.|.++. + .++..++||+| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 3677765 8999999999999999999999999999998 899987776654 2 35678999999 888999
Q ss_pred hhHHHHHhcCCCCC-------CHHHHHHHHHHhccH-----------------HHH------------HhCCCCcccccc
Q 040099 475 SSIRDNIAYGKTHA-------TKEEIQAAAEAANAS-----------------HFI------------KNLPQGLDTNVG 518 (1236)
Q Consensus 475 ~ti~~ni~~g~~~~-------~~~~~~~~~~~~~~~-----------------~~i------------~~l~~g~~t~~g 518 (1236)
.++++|++. .|+. +.+.+..+++.++.. ..+ ..+++++++.++
T Consensus 200 ~~l~~~L~~-~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~ 278 (372)
T 2ewv_A 200 DALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 278 (372)
T ss_dssp HHHHHHTTS-CCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHhhh-CcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEE
Confidence 999999997 4554 677777777765431 111 124678999999
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCCE--EEEeCcCCCCCHH----H-----HHHHHHHHHHHccCceEEEEecCchh
Q 040099 519 EHGIQLSGGQKQRVAIARAMIKDPRI--LLLDEATSALDSE----S-----GRMVQEALDRVMINRTTVIVSHRLSL 584 (1236)
Q Consensus 519 ~~g~~LSgGqkqRiaiARal~~~p~i--lilDE~ts~lD~~----~-----~~~i~~~l~~~~~~~t~i~itH~~~~ 584 (1236)
+++..+||| ||+++||+++.+|+| +|+||+|++||.. + +..++++++.+.+|+|.+.++||++.
T Consensus 279 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 279 QRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 999999999 899999999999999 9999999999975 3 34577888888889999999999974
No 154
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.77 E-value=1.3e-20 Score=210.40 Aligned_cols=140 Identities=19% Similarity=0.172 Sum_probs=92.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChh-hHHHHHHHHh--------
Q 040099 1041 TIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSD-TIRANIAEMA-------- 1111 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNL~~~a-------- 1111 (1236)
++|||||||||||||+++|+|++.|++|+|.++|.++.. ...++.+++++|++.++.. ||.||+.-..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 489999999999999999999999999999999988743 3456889999999988765 9999873110
Q ss_pred -hhchHHHhhhhch-hhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Q 040099 1112 -NANGFISGLQEGY-DTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVV 1189 (1236)
Q Consensus 1112 -~~~~~i~~lp~Gl-dt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~I 1189 (1236)
.+.+++. ..+ +... ..||||||||+++|||++. +++|||||++||+... .+.+.|++ ..++|+|
T Consensus 81 ~~i~~~~~---~~~~~~~~----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~-~~l~~L~~---~~~vI~V 146 (270)
T 3sop_A 81 EPIEKYIN---EQYEKFLK----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL-EFMKHLSK---VVNIIPV 146 (270)
T ss_dssp HHHHHHHH---HHHHHHHH----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH-HHHHHHHT---TSEEEEE
T ss_pred HHHHHHHH---HHHHhhhH----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH-HHHHHHHh---cCcEEEE
Confidence 1122222 122 2222 2599999999999999885 9999999999999863 33344433 4899999
Q ss_pred ecCchhhh
Q 040099 1190 AHRLSTIK 1197 (1236)
Q Consensus 1190 aHRl~ti~ 1197 (1236)
.|+.+++.
T Consensus 147 i~K~D~lt 154 (270)
T 3sop_A 147 IAKADTMT 154 (270)
T ss_dssp ETTGGGSC
T ss_pred EeccccCC
Confidence 99988763
No 155
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.76 E-value=2.4e-20 Score=215.14 Aligned_cols=192 Identities=15% Similarity=0.152 Sum_probs=146.3
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccC-------Ch
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKL-------QV 1082 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i-------~~ 1082 (1236)
.++.+++++.|.. ...+|+++ |+|.+||++||+||||||||||+++|.|+.+|+.|.|.++|.+.+++ ..
T Consensus 45 ~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 45 PLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp STTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 4788999999973 24699999 99999999999999999999999999999999999999999763332 33
Q ss_pred HHHhcceEEEcCCCCCChhhHHHHHHHH---hhhchHHHhhhhchhhh-hcCCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 040099 1083 KWLRQQMGVVSQEPVLFSDTIRANIAEM---ANANGFISGLQEGYDTL-VGERGVQLSGGQKQRVAIARAIVKEPKILLL 1158 (1236)
Q Consensus 1083 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~---a~~~~~i~~lp~Gldt~-vge~G~~LSGGQrQRlaLARALlr~p~ILlL 1158 (1236)
..+++.+.+++|.+. +..+++... ..+.++... .|.+.. +-+...+||+|| ||+++| +.+|++
T Consensus 122 ~~~~~~v~~~~~~~~----~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~--- 188 (347)
T 2obl_A 122 STLSKCVLVVTTSDR----PALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV--- 188 (347)
T ss_dssp HHHTTEEEEEECTTS----CHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC---
T ss_pred hhhhceEEEEECCCC----CHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc---
Confidence 456778899998642 112332211 111111111 122210 012345799999 999999 689998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHcC---CC-----eEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhh
Q 040099 1159 DEATSALDIESERVVQDALDQVMV---DR-----TTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLIS 1221 (1236)
Q Consensus 1159 DEaTSaLD~~te~~I~~~L~~~~~---~~-----TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~ 1221 (1236)
|+++|+.....+.+.++++.+ |. |++++||+++ -.-||++++|.+|+|+..|+++++..
T Consensus 189 ---t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~~~ 255 (347)
T 2obl_A 189 ---RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEENH 255 (347)
T ss_dssp ---BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTTTC
T ss_pred ---ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHcCC
Confidence 999999999999999988752 55 8999999999 45599999999999999999988743
No 156
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.76 E-value=1e-18 Score=213.96 Aligned_cols=77 Identities=21% Similarity=0.325 Sum_probs=72.2
Q ss_pred CCC-ChHHHHHHHHHHHhcCCC--CEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCE
Q 040099 522 IQL-SGGQKQRVAIARAMIKDP--RILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGK 598 (1236)
Q Consensus 522 ~~L-SgGqkqRiaiARal~~~p--~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~ 598 (1236)
..| |||||||++|||||+.+| ++|||||||++||+.+...|.+.|+++.+++|+|+|||+++.+..||++++|++|.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~~ 474 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQV 474 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECCE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 456 999999999999999999 99999999999999999999999999877899999999999888899999997653
No 157
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.76 E-value=6.4e-21 Score=201.01 Aligned_cols=158 Identities=18% Similarity=0.232 Sum_probs=119.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHH
Q 040099 413 GTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEE 492 (1236)
Q Consensus 413 g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~ 492 (1236)
|++++|+||||||||||+++|+|+++ ++| |.++|.+..+++ .+++++||++|+. .++ ++|+.. ...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~--~~~---- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSR--VGL---- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEE--CCC----
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhc--ccc----
Confidence 78999999999999999999999999 999 999998886543 4688999999985 222 122211 000
Q ss_pred HHHHHHHhccHHHHHhCC-CCccccccCCCCCCChHHHHHH-HHHH---HhcCCCCEEEEeC--cCCCCCHHHHHHHHHH
Q 040099 493 IQAAAEAANASHFIKNLP-QGLDTNVGEHGIQLSGGQKQRV-AIAR---AMIKDPRILLLDE--ATSALDSESGRMVQEA 565 (1236)
Q Consensus 493 ~~~~~~~~~~~~~i~~l~-~g~~t~~g~~g~~LSgGqkqRi-aiAR---al~~~p~ililDE--~ts~lD~~~~~~i~~~ 565 (1236)
..+ ...+..+|+.+..+|||||+++ +++| |+..+|++||||| ||..+|....+.+.+.
T Consensus 67 ---------------~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~ 131 (189)
T 2i3b_A 67 ---------------EPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQT 131 (189)
T ss_dssp ---------------CCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHH
T ss_pred ---------------cCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHH
Confidence 001 1123478888999999999998 5566 7899999999999 8999999877777776
Q ss_pred HHHHccCceEEE--Ee--cCchhHhhcCeEEEEECCEEEEEe
Q 040099 566 LDRVMINRTTVI--VS--HRLSLIRNANIIAVIQQGKIVEKG 603 (1236)
Q Consensus 566 l~~~~~~~t~i~--it--H~~~~~~~ad~i~vl~~G~i~~~g 603 (1236)
+++ .+|+|+ ++ ||.+ ...+|+|..+++|+|++-.
T Consensus 132 l~~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 132 LST---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HHC---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred HhC---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 653 445554 34 9876 4557888888999998743
No 158
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.75 E-value=2e-18 Score=211.44 Aligned_cols=76 Identities=25% Similarity=0.313 Sum_probs=71.2
Q ss_pred CCC-ChhHHHHHHHHHHHccCC--CEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCC
Q 040099 1133 VQL-SGGQKQRVAIARAIVKEP--KILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQG 1208 (1236)
Q Consensus 1133 ~~L-SGGQrQRlaLARALlr~p--~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G 1208 (1236)
..| |||||||++|||||+.+| ++|||||||++||+.+...|.+.|+++.+++|||+|||+++.+..||++++|++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 346 999999999999999999 9999999999999999999999999887789999999999999889999999554
No 159
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.75 E-value=9.6e-19 Score=199.13 Aligned_cols=181 Identities=14% Similarity=0.110 Sum_probs=122.3
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCc-EEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHH
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG-EVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRD 479 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G-~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 479 (1236)
++|+++++.+++|++++|+||||||||||++.|++...|++| .|.+.+.+ .+...+++++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 589999999999999999999999999999999999999988 77554332 3455666666555555432 2233
Q ss_pred HHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHH-HHHHHHHHHhcCCCCEEEEeCcCC---C--
Q 040099 480 NIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQ-KQRVAIARAMIKDPRILLLDEATS---A-- 553 (1236)
Q Consensus 480 ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq-kqRiaiARal~~~p~ililDE~ts---~-- 553 (1236)
|+..+. .++++..++++ +.+...+ + .+.+...++|.+| +||+. |+|+..+|+++|+||||+ +
T Consensus 97 ~l~~~~--~~~~~~~~~~~-----~~l~~~~--l--~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~ 164 (296)
T 1cr0_A 97 SLKREI--IENGKFDQWFD-----ELFGNDT--F--HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASG 164 (296)
T ss_dssp HHHHHH--HHHTHHHHHHH-----HHHSSSC--E--EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-------
T ss_pred ccccCC--CCHHHHHHHHH-----HHhccCC--E--EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCC
Confidence 443321 11222222221 1222211 1 1233335689999 77777 999999999999999999 4
Q ss_pred -CCH-HHHHHHHHHHHHHcc--CceEEEEecCc--h--------------------hHh-hcCeEEEEECCEE
Q 040099 554 -LDS-ESGRMVQEALDRVMI--NRTTVIVSHRL--S--------------------LIR-NANIIAVIQQGKI 599 (1236)
Q Consensus 554 -lD~-~~~~~i~~~l~~~~~--~~t~i~itH~~--~--------------------~~~-~ad~i~vl~~G~i 599 (1236)
+|. .....+.+.|+++.+ +.|+|+++|.. + .+. .||+|++|++|+.
T Consensus 165 ~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 165 ESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 454 555678888887743 78999999995 4 555 4999999999975
No 160
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.74 E-value=1.1e-17 Score=193.93 Aligned_cols=76 Identities=29% Similarity=0.385 Sum_probs=68.4
Q ss_pred CCCCCChHHHH------HHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhhcCeEE
Q 040099 520 HGIQLSGGQKQ------RVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRNANIIA 592 (1236)
Q Consensus 520 ~g~~LSgGqkq------RiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~ad~i~ 592 (1236)
....||||||| |+++|||++.+|++|||||||++||+.....+.+.|+++. .++|+|+|||+.+....||+++
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~ 324 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVI 324 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEE
Confidence 45679999999 6788999999999999999999999999999999998874 4689999999987777799999
Q ss_pred EEE
Q 040099 593 VIQ 595 (1236)
Q Consensus 593 vl~ 595 (1236)
+|+
T Consensus 325 ~l~ 327 (339)
T 3qkt_A 325 RIS 327 (339)
T ss_dssp EEE
T ss_pred EEE
Confidence 985
No 161
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.74 E-value=1.6e-18 Score=197.29 Aligned_cols=177 Identities=15% Similarity=0.117 Sum_probs=119.0
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCc-EEEECCeecccCChHHHhcceEEEcCCCCCChhhHHH
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG-HITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRA 1105 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G-~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIre 1105 (1236)
++|+++++.+++|+.++|+||||||||||++.|.+...|.+| .|.+.+.+ .+...+++++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 479999999999999999999999999999999999999878 77654433 3556677776666655432 1122
Q ss_pred HHH----HHhhhchHHHhhhhchhhhhcCCCCCCChhH-HHHHHHHHHHccCCCEEEEecCCC---C---CCH-HHHHHH
Q 040099 1106 NIA----EMANANGFISGLQEGYDTLVGERGVQLSGGQ-KQRVAIARAIVKEPKILLLDEATS---A---LDI-ESERVV 1173 (1236)
Q Consensus 1106 NL~----~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQ-rQRlaLARALlr~p~ILlLDEaTS---a---LD~-~te~~I 1173 (1236)
|+. ........+..+-+...-.+.+...++|.+| +||+. |+++..+|++||+||||+ + +|. .....+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i 175 (296)
T 1cr0_A 97 SLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNL 175 (296)
T ss_dssp HHHHHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHH
Confidence 221 0000111111110100111233335689999 67776 999999999999999999 4 454 555677
Q ss_pred HHHHHHHcC--CCeEEEEecCc--h--------------------hhh-hcCEEEEEeCCEE
Q 040099 1174 QDALDQVMV--DRTTLVVAHRL--S--------------------TIK-NAHLIAVVSQGMI 1210 (1236)
Q Consensus 1174 ~~~L~~~~~--~~TvI~IaHRl--~--------------------ti~-~aD~I~Vl~~G~I 1210 (1236)
.+.|+++.+ ++|||+++|.. + .+. .||+|++|++|+.
T Consensus 176 ~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 176 MTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 788877643 79999999995 4 554 5999999999875
No 162
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.74 E-value=1.7e-21 Score=227.59 Aligned_cols=161 Identities=22% Similarity=0.259 Sum_probs=134.2
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCC-CcEEEECCeecccCChHHHhcceEEEcC-----CCCCCh
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPS-SGHITLDGVEIQKLQVKWLRQQMGVVSQ-----EPVLFS 1100 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~-~G~I~idG~di~~i~~~~lR~~i~~V~Q-----dp~LF~ 1100 (1236)
++|++++ +++|+.++|+|||||||||++++|.|+++|+ +|+|.++|.++. + .+|+.+++|+| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 3677766 8999999999999999999999999999998 899987776664 2 36788999999 899999
Q ss_pred hhHHHHHH---------------------HHhhhc-------------hHH----------------HhhhhchhhhhcC
Q 040099 1101 DTIRANIA---------------------EMANAN-------------GFI----------------SGLQEGYDTLVGE 1130 (1236)
Q Consensus 1101 gTIreNL~---------------------~~a~~~-------------~~i----------------~~lp~Gldt~vge 1130 (1236)
++|++||. +.++.. +.+ ..+++++++.|++
T Consensus 200 ~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~q 279 (372)
T 2ewv_A 200 DALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQ 279 (372)
T ss_dssp HHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEE
T ss_pred HHHHHHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEE
Confidence 99999973 111110 011 1256788999999
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCE--EEEecCCCCCCHH----H-----HHHHHHHHHHHcCCCeEEEEecCchh
Q 040099 1131 RGVQLSGGQKQRVAIARAIVKEPKI--LLLDEATSALDIE----S-----ERVVQDALDQVMVDRTTLVVAHRLST 1195 (1236)
Q Consensus 1131 ~G~~LSGGQrQRlaLARALlr~p~I--LlLDEaTSaLD~~----t-----e~~I~~~L~~~~~~~TvI~IaHRl~t 1195 (1236)
++..+|+| ||+++||+++.+|+| +|+||+|+++|.. + +..++++++...+|+|.+.+|||++.
T Consensus 280 rl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 280 RLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 88889999 899999999999999 9999999999975 3 55789999988899999999999984
No 163
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.74 E-value=2.7e-18 Score=222.50 Aligned_cols=171 Identities=18% Similarity=0.190 Sum_probs=122.3
Q ss_pred CcEEEEe-----EEEECCCCCCCccccceeEEecC-------CcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCee
Q 040099 383 GDIELKD-----VNFSYPARPDEQILNGFCLLIPN-------GTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVN 450 (1236)
Q Consensus 383 ~~i~~~~-----v~f~y~~~~~~~~l~~i~~~i~~-------g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~ 450 (1236)
+.|+++| |++.|++ +..+++|++|++++ |++++|+|||||||||+++.+ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 4599999 9999952 35799999999987 999999999999999999999 98863
Q ss_pred cCCCCHHHHhcceE-EEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHH
Q 040099 451 LKEFQLKWIREKIG-LVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQK 529 (1236)
Q Consensus 451 ~~~~~~~~~r~~i~-~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqk 529 (1236)
..++| ||||++. ..|+.|||.. + .++.+.+. .+-.++|++++
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~-r--------------ig~~d~~~-----------~~~stf~~em~ 857 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVFT-R--------------LGASDRIM-----------SGESTFFVELS 857 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEEE-E--------------CC--------------------CHHHHHHH
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHHH-H--------------cCCHHHHh-----------hchhhhHHHHH
Confidence 24666 9999873 4467777642 1 11112111 11235777776
Q ss_pred HHHHHHHHhcCCCCEEEEeCcCCCCCHHHH-HHHHHHHHHHc-c-CceEEEEecCchhHhh-cCeEEEEECCEEE--EEe
Q 040099 530 QRVAIARAMIKDPRILLLDEATSALDSESG-RMVQEALDRVM-I-NRTTVIVSHRLSLIRN-ANIIAVIQQGKIV--EKG 603 (1236)
Q Consensus 530 qRiaiARal~~~p~ililDE~ts~lD~~~~-~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-ad~i~vl~~G~i~--~~g 603 (1236)
+ +++||+++.+|+++||||||+++|+... ..+++.|+.+. + +.|+|++||+++.+.. +|++.++ +|++. ++|
T Consensus 858 ~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~ 935 (1022)
T 2o8b_B 858 E-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVEN 935 (1022)
T ss_dssp H-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC---
T ss_pred H-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEec
Confidence 5 9999999999999999999999999874 55677777764 3 7899999999999875 8998886 58887 555
Q ss_pred Ccc
Q 040099 604 THS 606 (1236)
Q Consensus 604 ~~~ 606 (1236)
+.+
T Consensus 936 ~~~ 938 (1022)
T 2o8b_B 936 ECE 938 (1022)
T ss_dssp ---
T ss_pred Ccc
Confidence 443
No 164
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.74 E-value=1.7e-22 Score=235.48 Aligned_cols=226 Identities=12% Similarity=0.012 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHh-cCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccCCCCC-CCC
Q 040099 304 GLGVWYGAKLILE-KGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKL-DDI 381 (1236)
Q Consensus 304 ~~~~~~g~~~v~~-g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~-~~~ 381 (1236)
+.+.+.|++.+.+ |.+|.|++.+|+.++.....| .+......++.+..+.+|+.+++ +|...... ..... ...
T Consensus 49 v~v~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~-~~~~ir~~~ 123 (361)
T 2gza_A 49 VFCERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGT-ISVTIRKPS 123 (361)
T ss_dssp EEEEETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTC-CEEEEECCC
T ss_pred EEEEECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCC-eEEEEEecC
Confidence 3345667777665 889999999998887665444 23333333444455677888887 33322110 00000 011
Q ss_pred CCcE---------EEEeEEEE---CCCCCCCccc---------cceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 040099 382 RGDI---------ELKDVNFS---YPARPDEQIL---------NGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQ 440 (1236)
Q Consensus 382 ~~~i---------~~~~v~f~---y~~~~~~~~l---------~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~ 440 (1236)
.+.+ +|+||+|+ |++. +.++| +++||++++|+.++|+||||||||||+++|+|+++|+
T Consensus 124 ~~~itl~~l~~~g~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~ 202 (361)
T 2gza_A 124 FTRRTLEDYAQQGFFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD 202 (361)
T ss_dssp CCCCCHHHHHHTTTTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT
T ss_pred CCCCCHHHHHhcCCcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 2335 89999999 8631 23455 9999999999999999999999999999999999999
Q ss_pred CcEEEECCeecCCCCHHHHhcceEEEc-cCCCC---CchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCcccc
Q 040099 441 AGEVLIDGVNLKEFQLKWIREKIGLVS-QEPVL---LSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTN 516 (1236)
Q Consensus 441 ~G~i~~~g~~~~~~~~~~~r~~i~~v~-Q~~~l---~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ 516 (1236)
+|.|.++|. .++....+++.++|++ |++.+ +..|+++||.++....++..+..+++.+++.+++..+|.|++|.
T Consensus 203 ~g~I~ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~ 280 (361)
T 2gza_A 203 QRLITIEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGS 280 (361)
T ss_dssp SCEEEEESS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSC
T ss_pred ceEEEECCc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeE
Confidence 999999975 4555555678899999 88876 67799999998765433333333344456678899999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHH
Q 040099 517 VGEHGIQLSGGQKQRVAIARA 537 (1236)
Q Consensus 517 ~g~~g~~LSgGqkqRiaiARa 537 (1236)
+++-+.+-..+..+|+.....
T Consensus 281 l~t~H~~~~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 281 ITSCHAGSCELTFERLALMVL 301 (361)
T ss_dssp EEEEECSSHHHHHHHHHHHHT
T ss_pred EEEECCCCHHHHHHHHHHHHh
Confidence 998888888899999987653
No 165
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.73 E-value=1.4e-18 Score=225.21 Aligned_cols=172 Identities=15% Similarity=0.115 Sum_probs=122.7
Q ss_pred ccEEEeE-----EEEECCCCCCcccccceeEEecC-------CCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCee
Q 040099 1009 GEVQFLR-----VSFKYPTRPHIEVFRDLCLTIPP-------GKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVE 1076 (1236)
Q Consensus 1009 g~I~f~~-----Vsf~Y~~~~~~~vL~~is~~I~~-------Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~d 1076 (1236)
+.|+++| |++.|++. ..|++|++|++++ |+.++|+|||||||||+++++ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~--~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGD--DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------CC--CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecCC--ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 4699999 99999532 3699999999988 999999999999999999999 99863
Q ss_pred cccCChHHHhcceE-EEcCCCCCChhhHHHHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCE
Q 040099 1077 IQKLQVKWLRQQMG-VVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKI 1155 (1236)
Q Consensus 1077 i~~i~~~~lR~~i~-~V~Qdp~LF~gTIreNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~I 1155 (1236)
+.++| +|||++. .-|+.|||....++.+. +..+-..+|+++++ +++||++..+|++
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~rig~~d~-----------~~~~~stf~~em~~-~a~al~la~~~sL 871 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVFTRLGASDR-----------IMSGESTFFVELSE-TASILMHATAHSL 871 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEEEECC--------------------CHHHHHHHH-HHHHHHHCCTTCE
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHHHHcCCHHH-----------HhhchhhhHHHHHH-HHHHHHhCCCCcE
Confidence 34566 9999973 45666666322222221 11223457777665 9999999999999
Q ss_pred EEEecCCCCCCHHH-HHHHHHHHHHHc-C-CCeEEEEecCchhhhh-cCEEEEEeCCEEE--EecChhH
Q 040099 1156 LLLDEATSALDIES-ERVVQDALDQVM-V-DRTTLVVAHRLSTIKN-AHLIAVVSQGMIV--EKGSHES 1218 (1236)
Q Consensus 1156 LlLDEaTSaLD~~t-e~~I~~~L~~~~-~-~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Iv--e~Gt~~e 1218 (1236)
+||||||+++|+.. ...+++.|+.+. + ++|+|++||.++.+.. +|++.|+ +|++. +.|++++
T Consensus 872 lLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 872 VLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENECED 939 (1022)
T ss_dssp EEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-------
T ss_pred EEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCccc
Confidence 99999999999987 455677777764 3 7899999999999875 8999887 58887 5666554
No 166
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.73 E-value=3.8e-17 Score=189.26 Aligned_cols=75 Identities=27% Similarity=0.350 Sum_probs=67.6
Q ss_pred CCCCChhHHH------HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhhcCEEEE
Q 040099 1132 GVQLSGGQKQ------RVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKNAHLIAV 1204 (1236)
Q Consensus 1132 G~~LSGGQrQ------RlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~aD~I~V 1204 (1236)
...||||||| |+++|||++.+|++|||||||++||+.+...+.+.|++.. .++|+|+|||+.+....||+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~ 325 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIR 325 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEE
Confidence 3579999999 6788899999999999999999999999999999998864 46799999999887777999999
Q ss_pred Ee
Q 040099 1205 VS 1206 (1236)
Q Consensus 1205 l~ 1206 (1236)
|+
T Consensus 326 l~ 327 (339)
T 3qkt_A 326 IS 327 (339)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 167
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.73 E-value=3e-21 Score=206.07 Aligned_cols=158 Identities=17% Similarity=0.259 Sum_probs=124.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCC-------------CCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhH
Q 040099 411 PNGTIAALVGTSGSGKSTVISLIQRFYD-------------PQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSI 477 (1236)
Q Consensus 411 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~-------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti 477 (1236)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++...+...+++.+ +|+++++++++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence 6899999999999999999999999986 88898 589998888888888876 79999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH-HhcCCCCEEEEeCcCCCCCH
Q 040099 478 RDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIAR-AMIKDPRILLLDEATSALDS 556 (1236)
Q Consensus 478 ~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiAR-al~~~p~ililDE~ts~lD~ 556 (1236)
.+|+ ||. +.++++++++...+.-+ .-.|+|+++.... ++ .|| +++.+|++++|||+|+++|.
T Consensus 77 ~~n~-~g~---~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~ 139 (198)
T 1lvg_A 77 SGNL-YGT---SKEAVRAVQAMNRICVL-DVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNT 139 (198)
T ss_dssp TTEE-EEE---EHHHHHHHHHTTCEEEE-ECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTC
T ss_pred cCcc-CCC---CHHHHHHHHHcCCcEEE-ECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCC
Confidence 9998 764 56788888875332211 1234566665422 12 677 89999999999999999999
Q ss_pred HHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEEC
Q 040099 557 ESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQ 596 (1236)
Q Consensus 557 ~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~ 596 (1236)
++++.|++.|.+..++ +.++| ++ ..+|+|+++++
T Consensus 140 ~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 140 ETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp SCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred CCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 9999999999877554 35677 44 77999988864
No 168
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.72 E-value=3.9e-19 Score=196.49 Aligned_cols=162 Identities=14% Similarity=0.145 Sum_probs=105.8
Q ss_pred CcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHH
Q 040099 1025 HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIR 1104 (1236)
Q Consensus 1025 ~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIr 1104 (1236)
..++|+|+||++++|+.+||+||||||||||+++|.+++ |.+.+| ..++.+++++||++...-|..
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 456999999999999999999999999999999999987 666655 367899999999744445899
Q ss_pred HHHHHHhhh--------------chHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH
Q 040099 1105 ANIAEMANA--------------NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESE 1170 (1236)
Q Consensus 1105 eNL~~~a~~--------------~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te 1170 (1236)
+|+....+. .+.+..+.++.+. ....||+||+||+++ ++++.+|+++|||||....|..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~----~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~-- 149 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTV----EVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE-- 149 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHHHHHTTCCE----EECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHHHHHCCCCe----ecccccccccCccCc-eEEecCCCEEEEeCccccccHH--
Confidence 987532221 1122223222222 234699999999988 6889999999999988877754
Q ss_pred HHHHHHHHHHcCCCeEEEEecCchhh-hh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1171 RVVQDALDQVMVDRTTLVVAHRLSTI-KN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1171 ~~I~~~L~~~~~~~TvI~IaHRl~ti-~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
+.+. .+.|++++||....+ +. ++.+ ++|+ ++++++++
T Consensus 150 ------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~~ 188 (245)
T 2jeo_A 150 ------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILTQ 188 (245)
T ss_dssp ------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHHH
T ss_pred ------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHHH
Confidence 2232 378999999974434 43 3334 6675 67777654
No 169
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.71 E-value=1.5e-20 Score=200.73 Aligned_cols=159 Identities=15% Similarity=0.220 Sum_probs=120.6
Q ss_pred ecCCCEEEEEcCCCCChHHHHHHHhcccC-------------CCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhh
Q 040099 1036 IPPGKTIALVGESGSGKSTVISLLQRFYD-------------PSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDT 1102 (1236)
Q Consensus 1036 I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~-------------~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gT 1102 (1236)
+++|++++||||||||||||+++|.|+++ |..|+ +||+|+..++.+.+|+.+ +|++++|.+|
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 36899999999999999999999999996 78897 699999999999999876 7999999988
Q ss_pred HHHHHH--------HHhhh--chHHHhhhhchhhhhcCCCCCCChhHHHHHHHHH-HHccCCCEEEEecCCCCCCHHHHH
Q 040099 1103 IRANIA--------EMANA--NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIAR-AIVKEPKILLLDEATSALDIESER 1171 (1236)
Q Consensus 1103 IreNL~--------~~a~~--~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLAR-ALlr~p~ILlLDEaTSaLD~~te~ 1171 (1236)
+++|+. +.+.. .....-.|+|+++.... ++ .|| +++++|++++|||+|+++|.+||+
T Consensus 76 ~~~n~~g~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~~~e~ 143 (198)
T 1lvg_A 76 FSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNTETEE 143 (198)
T ss_dssp ETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTCSCHH
T ss_pred ecCccCCCCHHHHHHHHHcCCcEEEECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCCCCHH
Confidence 877751 11111 00112236777776432 12 677 899999999999999999999999
Q ss_pred HHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhh
Q 040099 1172 VVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLIS 1221 (1236)
Q Consensus 1172 ~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~ 1221 (1236)
.|++.|.+..++ +.++| ++ ..||+|+|+++ -..+.++|.+
T Consensus 144 ~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~----le~a~~~l~~ 183 (198)
T 1lvg_A 144 SLAKRLAAARTD---MESSK--EP-GLFDLVIINDD----LDKAYATLKQ 183 (198)
T ss_dssp HHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS----HHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC----HHHHHHHHHH
Confidence 999999877554 46788 55 88999999875 2345555544
No 170
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.71 E-value=1.1e-17 Score=205.16 Aligned_cols=152 Identities=18% Similarity=0.103 Sum_probs=118.2
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHh-cCC
Q 040099 407 CLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIA-YGK 485 (1236)
Q Consensus 407 ~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~-~g~ 485 (1236)
+..+++|++++|+||||||||||++.++|...|. |+ +.+.|++|++ ..++.+|.. +|.
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~---~~~l~~~~~~~g~ 333 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEES---RAQLLRNAYSWGM 333 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSC---HHHHHHHHHTTSC
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCC---HHHHHHHHHHcCC
Confidence 4589999999999999999999999999998875 53 1256677776 235555543 221
Q ss_pred CCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHH-----HHH
Q 040099 486 THATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE-----SGR 560 (1236)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~-----~~~ 560 (1236)
+.++ +. . .|+..........|||||+||+++||++..+|++||+| ||++||.. ..+
T Consensus 334 ---~~~~------------~~-~--~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~ 394 (525)
T 1tf7_A 334 ---DFEE------------ME-R--QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQ 394 (525)
T ss_dssp ---CHHH------------HH-H--TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHH
T ss_pred ---CHHH------------HH-h--CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHH
Confidence 2111 11 1 13334445556789999999999999999999999999 99999999 888
Q ss_pred HHHHHHHHHc-cCceEEEEecCc----------hhHhh-cCeEEEEECCE
Q 040099 561 MVQEALDRVM-INRTTVIVSHRL----------SLIRN-ANIIAVIQQGK 598 (1236)
Q Consensus 561 ~i~~~l~~~~-~~~t~i~itH~~----------~~~~~-ad~i~vl~~G~ 598 (1236)
.+.+.++.+. .|.|+|+++|+. ..+.. ||+|++|++|+
T Consensus 395 ~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 395 FVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 8888887764 478999999998 66665 99999999987
No 171
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.70 E-value=4.9e-17 Score=194.78 Aligned_cols=73 Identities=21% Similarity=0.318 Sum_probs=67.7
Q ss_pred CCChHHHHHHHHHHHhc----CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc-CceEEEEecCchhHhhcCeEEEEE
Q 040099 523 QLSGGQKQRVAIARAMI----KDPRILLLDEATSALDSESGRMVQEALDRVMI-NRTTVIVSHRLSLIRNANIIAVIQ 595 (1236)
Q Consensus 523 ~LSgGqkqRiaiARal~----~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~ad~i~vl~ 595 (1236)
.||||||||++|||+|+ .+|+++||||||++||+.....+.+.|+++.+ +.++|+|||+...+..||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999999 68999999999999999999999999998754 679999999988888899999986
No 172
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.70 E-value=4.7e-17 Score=163.89 Aligned_cols=88 Identities=26% Similarity=0.335 Sum_probs=75.6
Q ss_pred Cccccc-----cCCCCCCChHHHHHHHHH------HHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEe
Q 040099 512 GLDTNV-----GEHGIQLSGGQKQRVAIA------RAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVS 579 (1236)
Q Consensus 512 g~~t~~-----g~~g~~LSgGqkqRiaiA------Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~it 579 (1236)
+++..+ .....+||||||||++|| ||++.+|+++||||||++||+.+...+.+.+.++. +++|+|+||
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence 566554 345678999999999876 99999999999999999999999999999999875 478999999
Q ss_pred cCchhHhhcCeEEEE--ECCEE
Q 040099 580 HRLSLIRNANIIAVI--QQGKI 599 (1236)
Q Consensus 580 H~~~~~~~ad~i~vl--~~G~i 599 (1236)
|++.....||++++| ++|..
T Consensus 121 H~~~~~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 121 HDEELKDAADHVIRISLENGSS 142 (148)
T ss_dssp SCGGGGGGCSEEEEEEEETTEE
T ss_pred ChHHHHHhCCEEEEEEcCCCeE
Confidence 999666679999999 45643
No 173
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.69 E-value=9.8e-18 Score=210.96 Aligned_cols=159 Identities=19% Similarity=0.222 Sum_probs=120.6
Q ss_pred CCcEEEEeEEEECCCC--CCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCcEEEECCeecCCCCHHH
Q 040099 382 RGDIELKDVNFSYPAR--PDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD-PQAGEVLIDGVNLKEFQLKW 458 (1236)
Q Consensus 382 ~~~i~~~~v~f~y~~~--~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-~~~G~i~~~g~~~~~~~~~~ 458 (1236)
.+.|++++. ++|-- ++..+++|+||+ |++++|+|||||||||++|+++|+.. ++.|.+.- .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp-----------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP-----------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS-----------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee-----------h
Confidence 456899988 44421 235799999999 99999999999999999999999874 77887521 1
Q ss_pred HhcceEEEccCCCCCch-hHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 040099 459 IREKIGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARA 537 (1236)
Q Consensus 459 ~r~~i~~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARa 537 (1236)
.+..+++++| +|.. ++.||+.. .+|+|++|++.+|++
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~---------------------------------------g~S~~~~e~~~la~i 649 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAG---------------------------------------GKSTFMVEMEEVALI 649 (765)
T ss_dssp SEEEECCCSE---EEEECCC---------------------------------------------CCSHHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHh---------------------------------------cccHHHHHHHHHHHH
Confidence 1456888887 4543 66666543 268999999999999
Q ss_pred h--cCCCCEEEEeCc---CCCCCHHHH-HHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEE
Q 040099 538 M--IKDPRILLLDEA---TSALDSESG-RMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEK 602 (1236)
Q Consensus 538 l--~~~p~ililDE~---ts~lD~~~~-~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~ 602 (1236)
+ +.+|+++||||| ||+||+.+. ..+.+.|.+ .+.|+|++||+.+....| .-.+.++++...
T Consensus 650 l~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~--~~~v~n~~~~~~ 716 (765)
T 1ewq_A 650 LKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG--LPRLKNLHVAAR 716 (765)
T ss_dssp HHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC--CTTEEEEEEEEE
T ss_pred HHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh--hhcceEEEEEEE
Confidence 9 999999999999 999999876 468888876 589999999998877655 223456665544
No 174
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.69 E-value=9.2e-19 Score=193.50 Aligned_cols=160 Identities=14% Similarity=0.164 Sum_probs=102.1
Q ss_pred CCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHH
Q 040099 399 DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIR 478 (1236)
Q Consensus 399 ~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~ 478 (1236)
++++|+|+||++++|+++||+||||||||||+++|.|++ |.+.++ ..++.++|++|++....-|+.
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 457999999999999999999999999999999999976 555544 357789999999743345899
Q ss_pred HHHhcCCCC--------CCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCc
Q 040099 479 DNIAYGKTH--------ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEA 550 (1236)
Q Consensus 479 ~ni~~g~~~--------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ 550 (1236)
+|+.+.... ...+++.+.+ ..+.++.+..+ ..||+||+||+++ ++++.+|+++|||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L---------~~l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTL---------KNIVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHH---------HHHHTTCCEEE----CCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHH---------HHHHCCCCeec----ccccccccCccCc-eEEecCCCEEEEeCc
Confidence 998753211 1122222222 22222333333 4799999999998 699999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHccCceEEEEecCchhH-hh-cCeEEEEECCE
Q 040099 551 TSALDSESGRMVQEALDRVMINRTTVIVSHRLSLI-RN-ANIIAVIQQGK 598 (1236)
Q Consensus 551 ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~-~~-ad~i~vl~~G~ 598 (1236)
....|.. +.++ .+.|++++||....+ +. ++++ ++|+
T Consensus 143 ~~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 143 LVFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp TTTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred cccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence 8888764 2222 378999999974433 43 4444 6664
No 175
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.69 E-value=1.5e-16 Score=203.62 Aligned_cols=168 Identities=18% Similarity=0.160 Sum_probs=122.3
Q ss_pred CcEEEEeEEEECCCC--CCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHH--------HcCCCCCCcEEEECCeecC
Q 040099 383 GDIELKDVNFSYPAR--PDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLI--------QRFYDPQAGEVLIDGVNLK 452 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~--~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll--------~~~~~~~~G~i~~~g~~~~ 452 (1236)
+.+++++...-+-.. ++..+++|++|++++|++++|+|||||||||+++++ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 458888876544221 235799999999999999999999999999999999 66665654322
Q ss_pred CCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 040099 453 EFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRV 532 (1236)
Q Consensus 453 ~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRi 532 (1236)
++++. .+|. .+| +.+.+ ...+|+|++++.
T Consensus 702 ----------~~~~d---~i~~-------~ig-----------------~~d~l--------------~~~lStf~~e~~ 730 (934)
T 3thx_A 702 ----------VSIVD---CILA-------RVG-----------------AGDSQ--------------LKGVSTFMAEML 730 (934)
T ss_dssp ----------EECCS---EEEE-------ECC----------------------------------------CHHHHHHH
T ss_pred ----------chHHH---HHHH-------hcC-----------------chhhH--------------HHhHhhhHHHHH
Confidence 11110 0110 001 00111 125788888888
Q ss_pred HHHHHh--cCCCCEEEEeCcCCCCCHHHHHHH-HHHHHHHc--cCceEEEEecCchhHhhcCeEEEEECCEEEEEeCccc
Q 040099 533 AIARAM--IKDPRILLLDEATSALDSESGRMV-QEALDRVM--INRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSE 607 (1236)
Q Consensus 533 aiARal--~~~p~ililDE~ts~lD~~~~~~i-~~~l~~~~--~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~ 607 (1236)
.+|+++ +.+|+++||||||+++|+.....+ ...++.+. .|.|+|++||+.+....||++..+++|++...++.++
T Consensus 731 ~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~ 810 (934)
T 3thx_A 731 ETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEET 810 (934)
T ss_dssp HHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTE
T ss_pred HHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCc
Confidence 888888 999999999999999999988777 45555554 3789999999988888899999999999999888777
Q ss_pred cc
Q 040099 608 LL 609 (1236)
Q Consensus 608 l~ 609 (1236)
+.
T Consensus 811 l~ 812 (934)
T 3thx_A 811 LT 812 (934)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 176
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.69 E-value=2.2e-18 Score=199.67 Aligned_cols=167 Identities=20% Similarity=0.196 Sum_probs=120.5
Q ss_pred ccccce-eEEecCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCC----cE-EEECCeecCCCCHHHHhcceEEEccCCCC
Q 040099 401 QILNGF-CLLIPNGTIAALVGTSGSGKSTVISLIQRFY--DPQA----GE-VLIDGVNLKEFQLKWIREKIGLVSQEPVL 472 (1236)
Q Consensus 401 ~~l~~i-~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~--~~~~----G~-i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l 472 (1236)
+.|+++ ++.|++|++++|+||||||||||++.+++.+ +|++ |+ |++++.+.. .++++++++|++.+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~ 191 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGL 191 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCC
Confidence 467776 6899999999999999999999999999998 6666 68 899987641 24678999999988
Q ss_pred CchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc-------CCCCEE
Q 040099 473 LSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI-------KDPRIL 545 (1236)
Q Consensus 473 ~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~-------~~p~il 545 (1236)
+..++.+||.+.... + |++|+|++.++++++ .+|+++
T Consensus 192 ~~~~v~~ni~~~~~~-~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 192 DPDEVLKHIYVARAF-N-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp CHHHHGGGEEEEECC-S-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred CHHHHhhCEEEEecC-C-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 888999999876432 1 345666666666666 789999
Q ss_pred EEeCcCCCCCHHH------------HHHHHHHHHHHc--cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccc
Q 040099 546 LLDEATSALDSES------------GRMVQEALDRVM--INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELL 609 (1236)
Q Consensus 546 ilDE~ts~lD~~~------------~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~ 609 (1236)
|+||||+.+|++. ...+...|.++. .+.|+|+++|....... ++.+.+...|++++.+.+..|.
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVY 314 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEEE
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEE
Confidence 9999999999862 234444555543 37899999998775543 3456777889888888777664
No 177
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.68 E-value=3.4e-19 Score=208.83 Aligned_cols=176 Identities=15% Similarity=0.146 Sum_probs=115.7
Q ss_pred cccceeEEecC--CcEEEEEcCCCCcHHHHHHHHHcCCCCCC----cEEEE----CCeecCCCCHHHHhcceEEEccCCC
Q 040099 402 ILNGFCLLIPN--GTIAALVGTSGSGKSTVISLIQRFYDPQA----GEVLI----DGVNLKEFQLKWIREKIGLVSQEPV 471 (1236)
Q Consensus 402 ~l~~i~~~i~~--g~~~~ivG~sGsGKSTl~~ll~~~~~~~~----G~i~~----~g~~~~~~~~~~~r~~i~~v~Q~~~ 471 (1236)
+.+.|+++|++ |++++|+||||||||||+++|+|+++|++ |+|++ +|.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 46789999999 99999999999999999999999999999 99987 35555 4455555 56999999998
Q ss_pred CCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc-CCCCEEEEeC-
Q 040099 472 LLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI-KDPRILLLDE- 549 (1236)
Q Consensus 472 l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~-~~p~ililDE- 549 (1236)
+|..|++|||.++.....+..... +|+|++||..+++++. .+|++++|||
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~~----------------------------~~~~~~~~~~i~~~~~~~~~~lllLdE~ 286 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAFC----------------------------IQYEGKAHPFLDSMIKEYPFDVTILLKN 286 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHHH----------------------------HHHHSCCCHHHHHHHHHSCCSEEEEEEC
T ss_pred HHHHhccCCEEEEeCCchHHHHHH----------------------------HHHcCCCCHHHHHHHhhcCCCEEEECCC
Confidence 999999999998764322222221 3344455666666553 4666666666
Q ss_pred --cC------CCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhhcCeEEEEECCEEEEEeCccccc
Q 040099 550 --AT------SALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELL 609 (1236)
Q Consensus 550 --~t------s~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~ 609 (1236)
|+ +++|+.....+.+.|.++.+ +.|+++++|.-..-+.+|++.++++ +++.|+.+||.
T Consensus 287 ~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~~ 354 (365)
T 1lw7_A 287 NTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISELQ 354 (365)
T ss_dssp CCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSCC
T ss_pred CCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHhh
Confidence 43 45666666666666655433 5666666654222233455544432 33344455553
No 178
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.68 E-value=8e-19 Score=217.85 Aligned_cols=190 Identities=17% Similarity=0.272 Sum_probs=125.2
Q ss_pred cEEEeEEEEECCCCCCcccccce----------eEEecCCCEEEEEcCCCCChHHHHHHHhcccCC-CCcEEEECCeecc
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDL----------CLTIPPGKTIALVGESGSGKSTVISLLQRFYDP-SSGHITLDGVEIQ 1078 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~i----------s~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~-~~G~I~idG~di~ 1078 (1236)
.++++|+++.|+.. ..++|+.+ +++++. +|||||||||||||+++|.|++.| ++|.|+++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 57899999999642 12345444 467765 999999999999999999999988 7999999999963
Q ss_pred cC---ChHHHhcceEEEcCCCCCCh-hhHHHHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC
Q 040099 1079 KL---QVKWLRQQMGVVSQEPVLFS-DTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1079 ~i---~~~~lR~~i~~V~Qdp~LF~-gTIreNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
.. ....+|+++++++|++.+++ .||++|+....... +..+..+| ++++.++++...+|+
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~--------------~~~~~~~s---~~~i~l~i~~~~~p~ 148 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAI--------------AGEGMGIS---HELITLEISSRDVPD 148 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHH--------------HCSSSCCC---SCCEEEEEEESSSCC
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHh--------------cCCccccc---hHHHHHHhcCCCCCc
Confidence 22 24568899999999998775 59999996433221 11112223 244555566667899
Q ss_pred EEEEecC------CCCCCHHHHHHHHHHHHHHcC---CCeEEEEecCchhh--------hh-----cCEEEEEeCCEEEE
Q 040099 1155 ILLLDEA------TSALDIESERVVQDALDQVMV---DRTTLVVAHRLSTI--------KN-----AHLIAVVSQGMIVE 1212 (1236)
Q Consensus 1155 ILlLDEa------TSaLD~~te~~I~~~L~~~~~---~~TvI~IaHRl~ti--------~~-----aD~I~Vl~~G~Ive 1212 (1236)
++++||| |++||+.+...+.+.++++.+ +.++++++|.++.. +. ...|.|+.++.+++
T Consensus 149 LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~ 228 (608)
T 3szr_A 149 LTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVD 228 (608)
T ss_dssp EEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSS
T ss_pred eeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcC
Confidence 9999999 999999999999999998643 34677789997632 22 35799999999999
Q ss_pred ecChhHHh
Q 040099 1213 KGSHESLI 1220 (1236)
Q Consensus 1213 ~Gt~~eLl 1220 (1236)
.|++++++
T Consensus 229 ~g~~~~~~ 236 (608)
T 3szr_A 229 KGTEDKVV 236 (608)
T ss_dssp SSSTTCCC
T ss_pred cccHHHHH
Confidence 99876554
No 179
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.67 E-value=1.2e-17 Score=182.42 Aligned_cols=147 Identities=20% Similarity=0.272 Sum_probs=103.5
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHcCCCC-------CCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHH
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQRFYDP-------QAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNI 481 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-------~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni 481 (1236)
.+++|++++|+||||||||||+++|+|.+.| ..|.+++++.+. .+ ++++++++|+..++..|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6899999999999999999999999996665 445788887542 11 2457788898888888999999
Q ss_pred hcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh-------cCCCCEEEEeCcCCCC
Q 040099 482 AYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAM-------IKDPRILLLDEATSAL 554 (1236)
Q Consensus 482 ~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal-------~~~p~ililDE~ts~l 554 (1236)
.+..+....+ |++++..++++ ..+|++++|||||+.+
T Consensus 95 ~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l 138 (231)
T 4a74_A 95 YVARAFNSNH------------------------------------QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHF 138 (231)
T ss_dssp EEEECCSHHH------------------------------------HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHH
T ss_pred EEEecCChHH------------------------------------HHHHHHHHHHHHHHhcccCCceeEEEECChHHHh
Confidence 8764432111 11112222222 3589999999999999
Q ss_pred CHH-------HH-----HHHHHHHHHHc--cCceEEEEecCc----hhHhh-cCeEEEEECC
Q 040099 555 DSE-------SG-----RMVQEALDRVM--INRTTVIVSHRL----SLIRN-ANIIAVIQQG 597 (1236)
Q Consensus 555 D~~-------~~-----~~i~~~l~~~~--~~~t~i~itH~~----~~~~~-ad~i~vl~~G 597 (1236)
|++ .+ ..+.+.|.++. .|.|+|+++|.. ..+.+ ||++++|++|
T Consensus 139 ~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 139 RSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred ccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 984 22 25666666553 378999999944 44765 9999999875
No 180
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.67 E-value=1e-16 Score=161.42 Aligned_cols=87 Identities=23% Similarity=0.297 Sum_probs=74.6
Q ss_pred chhhhh-----cCCCCCCChhHHHHHHHH------HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEe
Q 040099 1123 GYDTLV-----GERGVQLSGGQKQRVAIA------RAIVKEPKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVA 1190 (1236)
Q Consensus 1123 Gldt~v-----ge~G~~LSGGQrQRlaLA------RALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~Ia 1190 (1236)
+|+..+ .....+||||||||++|| |||+++|++|||||||++||+++...+.+.|++.. .++|+|+||
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence 565554 244578999999999876 99999999999999999999999999999999864 478999999
Q ss_pred cCchhhhhcCEEEEE--eCCE
Q 040099 1191 HRLSTIKNAHLIAVV--SQGM 1209 (1236)
Q Consensus 1191 HRl~ti~~aD~I~Vl--~~G~ 1209 (1236)
|+++....||+|++| ++|.
T Consensus 121 H~~~~~~~~d~ii~l~~~~g~ 141 (148)
T 1f2t_B 121 HDEELKDAADHVIRISLENGS 141 (148)
T ss_dssp SCGGGGGGCSEEEEEEEETTE
T ss_pred ChHHHHHhCCEEEEEEcCCCe
Confidence 999766679999999 4564
No 181
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.67 E-value=3e-19 Score=192.66 Aligned_cols=140 Identities=14% Similarity=0.147 Sum_probs=108.7
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCc---hhHHHHHhcC--
Q 040099 410 IPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLS---SSIRDNIAYG-- 484 (1236)
Q Consensus 410 i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~---~ti~~ni~~g-- 484 (1236)
.++|+++||+||||||||||+++|.|++.| +++|++|++.+++ -|+++|+.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999865 5899999998874 3787776653
Q ss_pred CCC-CCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHH----HHHHHHHHHhcCCCCEEEEeCcCCC------
Q 040099 485 KTH-ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQ----KQRVAIARAMIKDPRILLLDEATSA------ 553 (1236)
Q Consensus 485 ~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq----kqRiaiARal~~~p~ililDE~ts~------ 553 (1236)
.+. ...+.+.++++..++.+++ ...+..+|+|| +||+++||+++.+|+++++||||++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i 129 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPV-----------EMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKV 129 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCE-----------EECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEE
T ss_pred ChhhhhHHHHHHHHHHHHcCCCc-----------CCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEE
Confidence 222 2345666666555433322 22345677775 5799999999999999999999999
Q ss_pred -CCHHHHHHHHHHHHHH--ccCceEEEEecCc
Q 040099 554 -LDSESGRMVQEALDRV--MINRTTVIVSHRL 582 (1236)
Q Consensus 554 -lD~~~~~~i~~~l~~~--~~~~t~i~itH~~ 582 (1236)
||+.++..+.+.+.+. .+|+|++.++|+.
T Consensus 130 ~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 130 FVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999988775 2588999999984
No 182
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.67 E-value=3.5e-17 Score=205.98 Aligned_cols=147 Identities=20% Similarity=0.179 Sum_probs=115.3
Q ss_pred cccEEEeEEEEECCCC--CCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccC-CCCcEEEECCeecccCChHH
Q 040099 1008 MGEVQFLRVSFKYPTR--PHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD-PSSGHITLDGVEIQKLQVKW 1084 (1236)
Q Consensus 1008 ~g~I~f~~Vsf~Y~~~--~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~-~~~G~I~idG~di~~i~~~~ 1084 (1236)
.+.|++++. ++|-- .+..+++|+||+ |+.++|+|||||||||+++++.++.. ++.|.+. + .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v---------p--a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV---------P--A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB---------S--S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee---------e--h
Confidence 567888887 55531 134699999999 99999999999999999999999974 6778652 1 1
Q ss_pred HhcceEEEcCCCCCChh-hHHHHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHH--ccCCCEEEEecC
Q 040099 1085 LRQQMGVVSQEPVLFSD-TIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAI--VKEPKILLLDEA 1161 (1236)
Q Consensus 1085 lR~~i~~V~Qdp~LF~g-TIreNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARAL--lr~p~ILlLDEa 1161 (1236)
.+.++++++| +|.. ++.||+.. .+|+|++|++.+|+++ +.+|+++|||||
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~------------------------g~S~~~~e~~~la~il~~a~~p~LlLLDEp 664 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAG------------------------GKSTFMVEMEEVALILKEATENSLVLLDEV 664 (765)
T ss_dssp SEEEECCCSE---EEEECCC------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEEST
T ss_pred hccceeeHHH---hhccCCHHHHHHh------------------------cccHHHHHHHHHHHHHHhccCCCEEEEECC
Confidence 2467888887 5543 77777621 2689999999999999 999999999999
Q ss_pred ---CCCCCHHHH-HHHHHHHHHHcCCCeEEEEecCchhhhhc
Q 040099 1162 ---TSALDIESE-RVVQDALDQVMVDRTTLVVAHRLSTIKNA 1199 (1236)
Q Consensus 1162 ---TSaLD~~te-~~I~~~L~~~~~~~TvI~IaHRl~ti~~a 1199 (1236)
||++|..+. ..+.+.|.+ .++|+|++||+.+....+
T Consensus 665 grGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 665 GRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred CCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 999999886 578888877 589999999998876544
No 183
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.66 E-value=3.7e-18 Score=197.80 Aligned_cols=166 Identities=20% Similarity=0.191 Sum_probs=120.6
Q ss_pred cccce-eEEecCCCEEEEEcCCCCChHHHHHHHhccc--CCCC----cE-EEECCeecccCChHHHhcceEEEcCCCCCC
Q 040099 1028 VFRDL-CLTIPPGKTIALVGESGSGKSTVISLLQRFY--DPSS----GH-ITLDGVEIQKLQVKWLRQQMGVVSQEPVLF 1099 (1236)
Q Consensus 1028 vL~~i-s~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~--~~~~----G~-I~idG~di~~i~~~~lR~~i~~V~Qdp~LF 1099 (1236)
.|+.+ ++.|++|+.++|+||+|||||||++.|.+.+ +|++ |. |+||+.+.- .++++++++|++.++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCC
Confidence 46665 6899999999999999999999999999998 6665 68 999997651 256788999999999
Q ss_pred hhhHHHHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHc-------cCCCEEEEecCCCCCCHHH---
Q 040099 1100 SDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIV-------KEPKILLLDEATSALDIES--- 1169 (1236)
Q Consensus 1100 ~gTIreNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALl-------r~p~ILlLDEaTSaLD~~t--- 1169 (1236)
..++.+|+. .. ..+ -|.+|+|++.++++++ .+|++||+||||+.+|++.
T Consensus 193 ~~~v~~ni~-~~----------~~~----------~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~ 251 (349)
T 1pzn_A 193 PDEVLKHIY-VA----------RAF----------NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGR 251 (349)
T ss_dssp HHHHGGGEE-EE----------ECC----------SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCST
T ss_pred HHHHhhCEE-EE----------ecC----------ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhccc
Confidence 888888762 10 001 1568999999999999 6899999999999999863
Q ss_pred ----H-----HHHHHHHHHHc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 040099 1170 ----E-----RVVQDALDQVM--VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLI 1220 (1236)
Q Consensus 1170 ----e-----~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl 1220 (1236)
+ ..+.+.|++.. .++|+|+++|....... ++.+.+...|++++++++..|.
T Consensus 252 ~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 252 GALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVY 314 (349)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEEE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEE
Confidence 1 33344444443 37899999998876543 3456778889999988877774
No 184
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.66 E-value=1.4e-19 Score=210.78 Aligned_cols=133 Identities=19% Similarity=0.136 Sum_probs=108.7
Q ss_pred EEeEEEEE---CCCCCCcccc---------cceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeeccc
Q 040099 1012 QFLRVSFK---YPTRPHIEVF---------RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQK 1079 (1236)
Q Consensus 1012 ~f~~Vsf~---Y~~~~~~~vL---------~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~ 1079 (1236)
+|++|+|+ |++. +.++| +++||+|++|+.++|+||||||||||+++|.|+++|++|.|+++|. .+
T Consensus 137 ~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e 213 (361)
T 2gza_A 137 FFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PE 213 (361)
T ss_dssp TTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SC
T ss_pred CcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--cc
Confidence 89999999 9642 23455 9999999999999999999999999999999999999999999985 46
Q ss_pred CChHHHhcceEEEc-CCCCC---ChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHH
Q 040099 1080 LQVKWLRQQMGVVS-QEPVL---FSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLSGGQK 1140 (1236)
Q Consensus 1080 i~~~~lR~~i~~V~-Qdp~L---F~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQr 1140 (1236)
+....+|+.+++++ |++.+ +..|+++||. +.+.+++++..+|.|++|.+++-+.+-..+..
T Consensus 214 ~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~ 293 (361)
T 2gza_A 214 LFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGSCELTF 293 (361)
T ss_dssp CCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHHHH
T ss_pred cCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCCCHHHHH
Confidence 66666788999999 99886 7889999996 22456678999999999999887777788899
Q ss_pred HHHHHHH
Q 040099 1141 QRVAIAR 1147 (1236)
Q Consensus 1141 QRlaLAR 1147 (1236)
+|+....
T Consensus 294 ~Rl~~l~ 300 (361)
T 2gza_A 294 ERLALMV 300 (361)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998765
No 185
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.66 E-value=3.1e-16 Score=200.67 Aligned_cols=168 Identities=13% Similarity=0.101 Sum_probs=120.4
Q ss_pred ccEEEeEEEEECCCC--CCcccccceeEEecCCCEEEEEcCCCCChHHHHHHH--------hcccCCCCcEEEECCeecc
Q 040099 1009 GEVQFLRVSFKYPTR--PHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLL--------QRFYDPSSGHITLDGVEIQ 1078 (1236)
Q Consensus 1009 g~I~f~~Vsf~Y~~~--~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL--------~r~~~~~~G~I~idG~di~ 1078 (1236)
+.|++++...-+-.. ....|++|++|++++|+.++|+|||||||||+++++ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 458888765444221 134689999999999999999999999999999999 55555543321
Q ss_pred cCChHHHhcceEEEcCCCCCChhhHHHHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHH--ccCCCEE
Q 040099 1079 KLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAI--VKEPKIL 1156 (1236)
Q Consensus 1079 ~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARAL--lr~p~IL 1156 (1236)
++++. .+|. ..++.+ .-...+|+|++++..+|+++ +.+|+++
T Consensus 702 ----------~~~~d---~i~~---------~ig~~d--------------~l~~~lStf~~e~~~~a~il~~a~~~sLl 745 (934)
T 3thx_A 702 ----------VSIVD---CILA---------RVGAGD--------------SQLKGVSTFMAEMLETASILRSATKDSLI 745 (934)
T ss_dssp ----------EECCS---EEEE---------ECC-----------------------CHHHHHHHHHHHHHHHCCTTCEE
T ss_pred ----------chHHH---HHHH---------hcCchh--------------hHHHhHhhhHHHHHHHHHHHHhccCCcEE
Confidence 11100 0110 000000 01134788888888888888 9999999
Q ss_pred EEecCCCCCCHHHHHHH-HHHHHHHc--CCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHh
Q 040099 1157 LLDEATSALDIESERVV-QDALDQVM--VDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLI 1220 (1236)
Q Consensus 1157 lLDEaTSaLD~~te~~I-~~~L~~~~--~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl 1220 (1236)
||||||+++|+.....+ +..++.+. .++|+|++||..+....||++..+.+|++...++++++.
T Consensus 746 LLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l~ 812 (934)
T 3thx_A 746 IIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLT 812 (934)
T ss_dssp EEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcEE
Confidence 99999999999887777 55555543 389999999998888889999999999999888877653
No 186
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.66 E-value=2.7e-16 Score=188.35 Aligned_cols=73 Identities=23% Similarity=0.325 Sum_probs=67.7
Q ss_pred CCChhHHHHHHHHHHHc----cCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCchhhhhcCEEEEEe
Q 040099 1134 QLSGGQKQRVAIARAIV----KEPKILLLDEATSALDIESERVVQDALDQVMV-DRTTLVVAHRLSTIKNAHLIAVVS 1206 (1236)
Q Consensus 1134 ~LSGGQrQRlaLARALl----r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~-~~TvI~IaHRl~ti~~aD~I~Vl~ 1206 (1236)
.||||||||++|||+|. ++|++|||||||++||+.+...+.+.|++... +.++|+|||+...+..||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999999 68999999999999999999999999988753 679999999988888899999986
No 187
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.65 E-value=2.8e-18 Score=190.01 Aligned_cols=179 Identities=15% Similarity=0.122 Sum_probs=110.5
Q ss_pred EEEEeEEEECCCCCCCccccceeE--EecCCcEEEEEcCCCCcHHHHHHHHH--cCCCCCCcEEEECCeecCCCCHHHHh
Q 040099 385 IELKDVNFSYPARPDEQILNGFCL--LIPNGTIAALVGTSGSGKSTVISLIQ--RFYDPQAGEVLIDGVNLKEFQLKWIR 460 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~--~i~~g~~~~ivG~sGsGKSTl~~ll~--~~~~~~~G~i~~~g~~~~~~~~~~~r 460 (1236)
+++++++..|+ .|+++ + .|++|++++|+||||||||||+++|+ +..++.+|.+++++.+... .....+
T Consensus 7 ~~~~~i~tg~~------~lD~~-l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 78 (251)
T 2ehv_A 7 QPVRRVKSGIP------GFDEL-IEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREM 78 (251)
T ss_dssp -CCCEECCSCT------TTGGG-TTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHH
T ss_pred cccceeecCCH------hHHHH-hcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHH
Confidence 45566666554 34443 2 78999999999999999999999999 7657778888887754321 122334
Q ss_pred cceEEEccCCCCCc-hhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 040099 461 EKIGLVSQEPVLLS-SSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI 539 (1236)
Q Consensus 461 ~~i~~v~Q~~~l~~-~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~ 539 (1236)
+.+++++|+...+. -++.++....... ...+. +. . -...+-++.++...+..-.
T Consensus 79 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----------~~-~------------~~~~~~~~~~~~~~~~l~~ 133 (251)
T 2ehv_A 79 ASFGWDFEKYEKEGKIAIVDGVSSVVGL-PSEEK-----------FV-L------------EDRFNVDNFLRYIYRVVKA 133 (251)
T ss_dssp HTTTCCHHHHHHTTSEEEEC--------------------------------------------CCHHHHHHHHHHHHHH
T ss_pred HHcCCChHHHhhcCCEEEEEcccccccc-ccccc-----------ee-c------------cCcccHHHHHHHHHHHHHh
Confidence 56788888653222 1232222111000 00000 00 0 0012344444444444446
Q ss_pred CCCCEEEEeCcCCCCC-----HHHHHHHHHHHHHHc-cCceEEEEecCchhH----------hhc-CeEEEEEC
Q 040099 540 KDPRILLLDEATSALD-----SESGRMVQEALDRVM-INRTTVIVSHRLSLI----------RNA-NIIAVIQQ 596 (1236)
Q Consensus 540 ~~p~ililDE~ts~lD-----~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~----------~~a-d~i~vl~~ 596 (1236)
.+|++++|||||+.+| +...+.+.+.++.+. .|+|+|++||+++.+ ..| |+|++|++
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 7999999999999997 566666888777764 489999999999886 347 99999964
No 188
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.65 E-value=2.4e-17 Score=190.52 Aligned_cols=147 Identities=21% Similarity=0.278 Sum_probs=110.2
Q ss_pred eEEEEECCCCCCcccccceeE-------EecCCCEEEEEcCCCCChHHHHHHHhcccCCC-CcEEEECCeecccCChHHH
Q 040099 1014 LRVSFKYPTRPHIEVFRDLCL-------TIPPGKTIALVGESGSGKSTVISLLQRFYDPS-SGHITLDGVEIQKLQVKWL 1085 (1236)
Q Consensus 1014 ~~Vsf~Y~~~~~~~vL~~is~-------~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~-~G~I~idG~di~~i~~~~l 1085 (1236)
.+++++|... ..+.|+++.+ .+.+|+.++|+|||||||||++++|.|+++|+ +|.|...+.++ ++. +
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---h
Confidence 5788888543 3467888887 78899999999999999999999999999987 57765544333 222 2
Q ss_pred hcceEEEcCCCCCChhhHHHHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCC
Q 040099 1086 RQQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSAL 1165 (1236)
Q Consensus 1086 R~~i~~V~Qdp~LF~gTIreNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaL 1165 (1236)
+...++++|.+.-... ++-.+ +|||||..+|++|++||||
T Consensus 167 ~~~~~~v~q~~~~~~~---------------------------------~~~~~----~La~aL~~~PdvillDEp~--- 206 (356)
T 3jvv_A 167 ESKKCLVNQREVHRDT---------------------------------LGFSE----ALRSALREDPDIILVGEMR--- 206 (356)
T ss_dssp CCSSSEEEEEEBTTTB---------------------------------SCHHH----HHHHHTTSCCSEEEESCCC---
T ss_pred hccccceeeeeecccc---------------------------------CCHHH----HHHHHhhhCcCEEecCCCC---
Confidence 3445667775432110 11111 9999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCC
Q 040099 1166 DIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQG 1208 (1236)
Q Consensus 1166 D~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G 1208 (1236)
|.++...+.++ ...|+|+|+++|..+.+..+||+++|..|
T Consensus 207 d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 207 DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 78876665554 33589999999999999889999888554
No 189
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.65 E-value=3.8e-17 Score=185.05 Aligned_cols=149 Identities=23% Similarity=0.244 Sum_probs=103.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCC----HHHH--hcceEEEccCCCCCch-hHHHHHhcC
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQ----LKWI--REKIGLVSQEPVLLSS-SIRDNIAYG 484 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~----~~~~--r~~i~~v~Q~~~l~~~-ti~~ni~~g 484 (1236)
+|++++|+|||||||||+++.|+|+++|++|+|.++|.|+.... ...+ |..++||+|++.+++. ++++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999986543 1222 4579999999988764 899998753
Q ss_pred CCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCC--EEEEeCcCCCCCHHHHHHH
Q 040099 485 KTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPR--ILLLDEATSALDSESGRMV 562 (1236)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~--ililDE~ts~lD~~~~~~i 562 (1236)
.. .+.+..+-..+...+. ....++..+|||++||||+..+|+ +|.|| |+++.| +
T Consensus 181 ~~-------------~~~d~~llDt~G~~~~----~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~------~ 236 (304)
T 1rj9_A 181 KA-------------RGYDLLFVDTAGRLHT----KHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN------G 236 (304)
T ss_dssp HH-------------HTCSEEEECCCCCCTT----CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH------H
T ss_pred Hh-------------CCCCEEEecCCCCCCc----hHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH------H
Confidence 10 0111111111111111 112256677999999999999999 55555 444443 3
Q ss_pred HHHHHHHc--cCceEEEEecCchh
Q 040099 563 QEALDRVM--INRTTVIVSHRLSL 584 (1236)
Q Consensus 563 ~~~l~~~~--~~~t~i~itH~~~~ 584 (1236)
.+.++++. .+.|+|++||...+
T Consensus 237 ~~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 237 LEQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHHHHHcCCcEEEEECCccc
Confidence 33344332 27899999997544
No 190
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.65 E-value=1e-19 Score=213.21 Aligned_cols=178 Identities=18% Similarity=0.199 Sum_probs=132.1
Q ss_pred cccceeEEecC--CCEEEEEcCCCCChHHHHHHHhcccCCCC----cEEEE----CCeecccCChHHHhcceEEEcCCCC
Q 040099 1028 VFRDLCLTIPP--GKTIALVGESGSGKSTVISLLQRFYDPSS----GHITL----DGVEIQKLQVKWLRQQMGVVSQEPV 1097 (1236)
Q Consensus 1028 vL~~is~~I~~--Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~----G~I~i----dG~di~~i~~~~lR~~i~~V~Qdp~ 1097 (1236)
+.+.|+++|++ |+++||+|+||||||||+++|.|+|+|++ |+|.+ +|.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45789999999 99999999999999999999999999999 99987 46666 5566666 56999999999
Q ss_pred CChhhHHHHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHc-cCCCEEEEec---CC------CCCCH
Q 040099 1098 LFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIV-KEPKILLLDE---AT------SALDI 1167 (1236)
Q Consensus 1098 LF~gTIreNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALl-r~p~ILlLDE---aT------SaLD~ 1167 (1236)
+|.+|+++||. ..+ .+. .++.+ ..+|+|++|+..+++++. .+|++++||| |+ +++|.
T Consensus 235 ~~~~t~~~nl~-~~~-~~~-------~~~~~----~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~ 301 (365)
T 1lw7_A 235 DYAVRHSHKIA-FID-TDF-------ITTQA----FCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQ 301 (365)
T ss_dssp HHHHHHCSSEE-EES-SCH-------HHHHH----HHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------C
T ss_pred HHHHhccCCEE-EEe-CCc-------hHHHH----HHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccH
Confidence 99999999973 111 011 11111 124567788888888875 5899999999 54 68999
Q ss_pred HHHHHHHHHHHHHcC--CCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 040099 1168 ESERVVQDALDQVMV--DRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1168 ~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
.....+.+.|++..+ +.|+|+++|--..-+-+|++.++++ +.+.|+++||.++
T Consensus 302 ~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~~~~ 356 (365)
T 1lw7_A 302 KQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISELQNT 356 (365)
T ss_dssp CSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSCCC-
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHhhcC
Confidence 999999999977654 7899999986433344777777764 5677788887543
No 191
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.65 E-value=2e-18 Score=214.30 Aligned_cols=190 Identities=17% Similarity=0.284 Sum_probs=121.4
Q ss_pred cEEEEeEEEECCCCCCCccccce----------eEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCcEEEECCeecC
Q 040099 384 DIELKDVNFSYPARPDEQILNGF----------CLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP-QAGEVLIDGVNLK 452 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i----------~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-~~G~i~~~g~~~~ 452 (1236)
.++++|+++.|+.. .+++|+.+ +++++. +|||||||||||||+++|+|++.| ++|.|+++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 47899999999631 23455554 367765 999999999999999999999988 8999999999863
Q ss_pred C---CCHHHHhcceEEEccCCCCCch-hHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHH
Q 040099 453 E---FQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQ 528 (1236)
Q Consensus 453 ~---~~~~~~r~~i~~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq 528 (1236)
. -....+|++|+|++|++.+++. ||+|||.++. .. +.... ..+|
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~------------~~------~~~~~-----------~~~s--- 133 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ------------NA------IAGEG-----------MGIS--- 133 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH------------HH------HHCSS-----------SCCC---
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH------------HH------hcCCc-----------cccc---
Confidence 2 1234678899999999988764 9999987521 00 00000 1112
Q ss_pred HHHHHHHHHhcCCCCEEEEeCc------CCCCCHHHHHHHHHHHHHHc-c--CceEEEEecCchhH--------hh----
Q 040099 529 KQRVAIARAMIKDPRILLLDEA------TSALDSESGRMVQEALDRVM-I--NRTTVIVSHRLSLI--------RN---- 587 (1236)
Q Consensus 529 kqRiaiARal~~~p~ililDE~------ts~lD~~~~~~i~~~l~~~~-~--~~t~i~itH~~~~~--------~~---- 587 (1236)
++++.++.+...+|+++++||| |++||+..+..+.+.++++. + +.++++++|+++.. +.
T Consensus 134 ~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~ 213 (608)
T 3szr_A 134 HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPE 213 (608)
T ss_dssp SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSS
T ss_pred hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhc
Confidence 2445555566678999999999 99999999999999999863 2 34778899987632 22
Q ss_pred -cCeEEEEECCEEEEEeCccccc
Q 040099 588 -ANIIAVIQQGKIVEKGTHSELL 609 (1236)
Q Consensus 588 -ad~i~vl~~G~i~~~g~~~~l~ 609 (1236)
...|+|+.++.+++.|+.+++.
T Consensus 214 g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 214 GDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp CCSEEEEEECGGGSSSSSTTCCC
T ss_pred CCceEEEecchhhcCcccHHHHH
Confidence 3468888888888777765544
No 192
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.64 E-value=6.2e-17 Score=183.33 Aligned_cols=161 Identities=22% Similarity=0.237 Sum_probs=109.7
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCC----hHHH--hcceEEEcCCCCCChh-hHHHHHHHH
Q 040099 1038 PGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ----VKWL--RQQMGVVSQEPVLFSD-TIRANIAEM 1110 (1236)
Q Consensus 1038 ~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~----~~~l--R~~i~~V~Qdp~LF~g-TIreNL~~~ 1110 (1236)
+|++++|||||||||||+++.|.|+++|++|+|.++|.|+.... +..+ |..+++|+|++.+++. |+++|+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999986543 2233 4679999999988764 899998521
Q ss_pred --hhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC--EEEEecCCCCCCHHHHHHHHHHHHHHc--CCC
Q 040099 1111 --ANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK--ILLLDEATSALDIESERVVQDALDQVM--VDR 1184 (1236)
Q Consensus 1111 --a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~--ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~ 1184 (1236)
.+.+..+-..++..+ .....++..++||.+||||+..+|+ +|.|| |+++.| +.+.+++.. .+.
T Consensus 181 ~~~~~d~~llDt~G~~~----~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~------~~~~~~~~~~~~~~ 249 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLH----TKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN------GLEQAKKFHEAVGL 249 (304)
T ss_dssp HHHTCSEEEECCCCCCT----TCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH------HHHHHHHHHHHHCC
T ss_pred HhCCCCEEEecCCCCCC----chHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH------HHHHHHHHHHHcCC
Confidence 111111101111000 0111246677999999999999999 56666 455543 333333322 278
Q ss_pred eEEEEecCchhhhhc----------CEEEEEeCCE
Q 040099 1185 TTLVVAHRLSTIKNA----------HLIAVVSQGM 1209 (1236)
Q Consensus 1185 TvI~IaHRl~ti~~a----------D~I~Vl~~G~ 1209 (1236)
|+|++||...+.+.. -.|..+..|+
T Consensus 250 t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge 284 (304)
T 1rj9_A 250 TGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGE 284 (304)
T ss_dssp SEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSS
T ss_pred cEEEEECCcccccccHHHHHHHHHCCCeEEEeCCC
Confidence 999999976543221 3566666664
No 193
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.63 E-value=1.9e-18 Score=186.37 Aligned_cols=135 Identities=15% Similarity=0.132 Sum_probs=102.3
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChh---hHHHHHHHH-
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSD---TIRANIAEM- 1110 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~g---TIreNL~~~- 1110 (1236)
..++|+++||+||||||||||+++|.|++.| ++++|+||+++++. |+++|+...
T Consensus 2 ~~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~ 59 (211)
T 3asz_A 2 SAPKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNY 59 (211)
T ss_dssp ---CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCC
Confidence 3579999999999999999999999999875 58999999998743 677775310
Q ss_pred --------hhhchHHHhhhhchhhhhcCCCCCCChhH----HHHHHHHHHHccCCCEEEEecCCCC-------CCHHHHH
Q 040099 1111 --------ANANGFISGLQEGYDTLVGERGVQLSGGQ----KQRVAIARAIVKEPKILLLDEATSA-------LDIESER 1171 (1236)
Q Consensus 1111 --------a~~~~~i~~lp~Gldt~vge~G~~LSGGQ----rQRlaLARALlr~p~ILlLDEaTSa-------LD~~te~ 1171 (1236)
..+.+.+..+ ++...+...+..+|+|| +||+++||+++.+|+++++||||++ ||+.++.
T Consensus 60 ~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~ 137 (211)
T 3asz_A 60 DHPDAFDLALYLEHAQAL--LRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADE 137 (211)
T ss_dssp TSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHH
T ss_pred CChhhhhHHHHHHHHHHH--HcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHH
Confidence 0111122221 11122333466788886 5799999999999999999999999 9999999
Q ss_pred HHHHHHHHHc--CCCeEEEEecCc
Q 040099 1172 VVQDALDQVM--VDRTTLVVAHRL 1193 (1236)
Q Consensus 1172 ~I~~~L~~~~--~~~TvI~IaHRl 1193 (1236)
.+++.+++.. +|+|++.++|+.
T Consensus 138 ~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 138 RFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999987653 588999999984
No 194
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.63 E-value=1e-16 Score=174.93 Aligned_cols=146 Identities=21% Similarity=0.238 Sum_probs=103.4
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcccCC-------CCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHH
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDP-------SSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI 1107 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~-------~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL 1107 (1236)
.|++||.++|+||||||||||+++|.+.+.+ ..|.|++++.+. .+ +++++.++|+..++..|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 7999999999999999999999999997665 455888888653 11 2356777888888877888875
Q ss_pred HHHhhhchHHHhhhhchhhhhcCCCCCCCh-hHHHHHHHHHHHcc-------CCCEEEEecCCCCCCHH-------HH--
Q 040099 1108 AEMANANGFISGLQEGYDTLVGERGVQLSG-GQKQRVAIARAIVK-------EPKILLLDEATSALDIE-------SE-- 1170 (1236)
Q Consensus 1108 ~~~a~~~~~i~~lp~Gldt~vge~G~~LSG-GQrQRlaLARALlr-------~p~ILlLDEaTSaLD~~-------te-- 1170 (1236)
. + . ...++ .|++++..+++++. +|++|+|||||+.+|++ .+
T Consensus 95 ~-------~----~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~ 152 (231)
T 4a74_A 95 Y-------V----A-----------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQ 152 (231)
T ss_dssp E-------E----E-----------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHH
T ss_pred E-------E----E-----------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHH
Confidence 2 0 0 01222 34455666676666 99999999999999984 22
Q ss_pred ---HHHHHHHHHHc--CCCeEEEEec----Cchhhhh-cCEEEEEeCC
Q 040099 1171 ---RVVQDALDQVM--VDRTTLVVAH----RLSTIKN-AHLIAVVSQG 1208 (1236)
Q Consensus 1171 ---~~I~~~L~~~~--~~~TvI~IaH----Rl~ti~~-aD~I~Vl~~G 1208 (1236)
..+.+.|.+.. .++|+|+|+| ....+.. ||++++|++|
T Consensus 153 ~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 153 QKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 24555555543 3799999999 4444765 8999999875
No 195
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.63 E-value=8.9e-17 Score=177.84 Aligned_cols=180 Identities=14% Similarity=0.076 Sum_probs=111.6
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHh--cccCCCCcEEEECCeecccCChHHHhcc
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQ--RFYDPSSGHITLDGVEIQKLQVKWLRQQ 1088 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~--r~~~~~~G~I~idG~di~~i~~~~lR~~ 1088 (1236)
++.++++..|+.-. .+|.+ .|++||.++|+||||||||||+++|. ++.++.+|.+.+++.+... .....+++
T Consensus 7 ~~~~~i~tg~~~lD--~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (251)
T 2ehv_A 7 QPVRRVKSGIPGFD--ELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMAS 80 (251)
T ss_dssp -CCCEECCSCTTTG--GGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHT
T ss_pred cccceeecCCHhHH--HHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHH
Confidence 55666777775321 24444 79999999999999999999999999 7756778888888755322 22334466
Q ss_pred eEEEcCCCCCCh-hhHHHHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCC-
Q 040099 1089 MGVVSQEPVLFS-DTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALD- 1166 (1236)
Q Consensus 1089 i~~V~Qdp~LF~-gTIreNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD- 1166 (1236)
+++++|++..+. -++.++....... ... ..-..-...+-++.+....+..-..+|++|+|||||+.+|
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~ 150 (251)
T 2ehv_A 81 FGWDFEKYEKEGKIAIVDGVSSVVGL-------PSE---EKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALR 150 (251)
T ss_dssp TTCCHHHHHHTTSEEEEC-----------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHH
T ss_pred cCCChHHHhhcCCEEEEEcccccccc-------ccc---cceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhh
Confidence 888887753221 1222222110000 000 0000001123445444444444457999999999999998
Q ss_pred ----HHHHHHHHHHHHHHc-CCCeEEEEecCchhh----------hhc-CEEEEEe
Q 040099 1167 ----IESERVVQDALDQVM-VDRTTLVVAHRLSTI----------KNA-HLIAVVS 1206 (1236)
Q Consensus 1167 ----~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti----------~~a-D~I~Vl~ 1206 (1236)
+...+.+.+.++.+. .|+|+|+++|.++.+ ..| |+|++|+
T Consensus 151 ~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 151 LEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp SSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 666666887777653 489999999999987 347 9999995
No 196
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.62 E-value=8.7e-18 Score=190.91 Aligned_cols=163 Identities=15% Similarity=0.123 Sum_probs=80.8
Q ss_pred EeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcC-CCCCCcEEEECCeecCCCCHHHHhcceEEE
Q 040099 388 KDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRF-YDPQAGEVLIDGVNLKEFQLKWIREKIGLV 466 (1236)
Q Consensus 388 ~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~-~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 466 (1236)
+|++++|. ++.++++++|+| +|+||||+|||||++.|.|. ..|++| |.++|.++.. . .. ++.++++
T Consensus 2 ~~l~~~~~---~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t-~~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVH---RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-T-VQ-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceEC---CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-c-ce-EeeEEEE
Confidence 47888995 346999999998 99999999999999999998 889999 8888877643 1 11 3568999
Q ss_pred ccCCCCC-chhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEE
Q 040099 467 SQEPVLL-SSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRIL 545 (1236)
Q Consensus 467 ~Q~~~l~-~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~il 545 (1236)
+|++.++ .-|+.|+..++......++.....+. +.+.... ...++|||||||+++|||++ ++
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~~~~-----------~~~~~sgg~rqrv~~ara~~----ll 131 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQFER-----------YLHDESGLNRRHIIDNRVHC----CF 131 (301)
T ss_dssp EC---CCEEEEEEEEC-----------CTTHHHH--HHHHHHH-----------HHHHHTSSCCTTCCCCCCCE----EE
T ss_pred ecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHHHHH-----------HHHHhCHHhhhhhhhhhhhh----ee
Confidence 9987655 44888888776432111111111111 1111111 12369999999999999986 99
Q ss_pred EEeCcCCC-CCHHHHHHHHHHHHHHcc--CceEEEEecCchh
Q 040099 546 LLDEATSA-LDSESGRMVQEALDRVMI--NRTTVIVSHRLSL 584 (1236)
Q Consensus 546 ilDE~ts~-lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~ 584 (1236)
++||||++ ||+... +.++++.+ +.++|+..|++.+
T Consensus 132 ~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 132 YFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp EEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGSC
T ss_pred eeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCCC
Confidence 99999985 999874 34444433 4677778898753
No 197
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.62 E-value=8.6e-17 Score=185.88 Aligned_cols=147 Identities=20% Similarity=0.213 Sum_probs=107.2
Q ss_pred EeEEEECCCCCCCccccceeE-------EecCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CcEEEECCeecCCCCHHHH
Q 040099 388 KDVNFSYPARPDEQILNGFCL-------LIPNGTIAALVGTSGSGKSTVISLIQRFYDPQ-AGEVLIDGVNLKEFQLKWI 459 (1236)
Q Consensus 388 ~~v~f~y~~~~~~~~l~~i~~-------~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~-~G~i~~~g~~~~~~~~~~~ 459 (1236)
.+++++|... ..+.|+++.+ ...+|++++|+||||||||||+++|+|+++|+ +|.|...+.++ ++. .
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---h
Confidence 5778887543 3567888776 77899999999999999999999999999997 56665433332 221 2
Q ss_pred hcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 040099 460 REKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI 539 (1236)
Q Consensus 460 r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~ 539 (1236)
+...++++|.+.... ..+.. + +|||||.
T Consensus 167 ~~~~~~v~q~~~~~~------------~~~~~------------------------------------~----~La~aL~ 194 (356)
T 3jvv_A 167 ESKKCLVNQREVHRD------------TLGFS------------------------------------E----ALRSALR 194 (356)
T ss_dssp CCSSSEEEEEEBTTT------------BSCHH------------------------------------H----HHHHHTT
T ss_pred hccccceeeeeeccc------------cCCHH------------------------------------H----HHHHHhh
Confidence 234456666432111 00100 0 9999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECC
Q 040099 540 KDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQG 597 (1236)
Q Consensus 540 ~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G 597 (1236)
.+|+++++|||| |.++...+.++ ...|+|+++++|+.+.+..+||+++|..|
T Consensus 195 ~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 195 EDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp SCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred hCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 999999999999 77776555554 33589999999999999889999988554
No 198
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.61 E-value=1.5e-17 Score=178.99 Aligned_cols=168 Identities=15% Similarity=0.188 Sum_probs=101.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCC-----CCCCcEEEE-------CCeecC
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFY-----DPQAGEVLI-------DGVNLK 452 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~-----~~~~G~i~~-------~g~~~~ 452 (1236)
|+++|++|+|+ .+++++ |++++|..++|+|++|||||||++.|+|.. .|+.|.+.. ++..+.
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78999999995 258888 899999999999999999999999999998 888888754 222222
Q ss_pred CCC-----------HHHHhcceEEEccCCCCCch-hHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccc-cccC
Q 040099 453 EFQ-----------LKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDT-NVGE 519 (1236)
Q Consensus 453 ~~~-----------~~~~r~~i~~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~g~ 519 (1236)
+.+ .+.+++.++++.|+....++ .+..++..+.. ..++++.+.+ ... +... .++.
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~~~---------~~~--~~~~~~v~n 145 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK-DLDQQMIEWA---------VDS--NIAVLVLLT 145 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHH---------HHT--TCCEEEEEE
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc-hhHHHHHHHH---------HHc--CCCeEEEEe
Confidence 111 12234444455543322221 22222222111 0111222222 111 3332 2466
Q ss_pred CCCCCChHHHHH-HHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc
Q 040099 520 HGIQLSGGQKQR-VAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM 570 (1236)
Q Consensus 520 ~g~~LSgGqkqR-iaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~ 570 (1236)
+...+|+||||| +..||+++.+|+++++|||||++|......+.+.|.++.
T Consensus 146 K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 146 KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 666899999999 899999999999999999999999999999999987764
No 199
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.60 E-value=3.9e-17 Score=192.19 Aligned_cols=166 Identities=15% Similarity=0.175 Sum_probs=100.9
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcc
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 462 (1236)
+.|+++|++++|+. +.+++|+||+| +||||||||||||++.|+|...|..| .+|.++...+ ...+..
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeee
Confidence 45899999999963 46999999998 99999999999999999999886665 2333322111 112356
Q ss_pred eEEEccCCCCC-chhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCC
Q 040099 463 IGLVSQEPVLL-SSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKD 541 (1236)
Q Consensus 463 i~~v~Q~~~l~-~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~ 541 (1236)
+++++|++.++ ..||.||+.++... ..++.+.. +.+++.. .++.+.+||++||||++++
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~~-~~~~~~~~-----i~~~i~~--------------~~~~~l~qr~~IaRal~~d 136 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDAV-DNSNCWQP-----VIDYIDS--------------KFEDYLNAESRVNRRQMPD 136 (418)
T ss_dssp EECC------CEEEEEEECC------------CHH-----HHHHHHH--------------HHHHHTTTSCC-CCCCCCC
T ss_pred EEEEEecCCcccceeeeechhhhhhc-cchhhHHH-----HHHHHHH--------------HHHHHHHHHHHHHHHhccC
Confidence 89999998776 45999999887542 11111111 1223321 3456677899999999999
Q ss_pred CC---EEEEeCcC-CCCCHHHHHHHHHHHHHHccCceEEEEecCchhH
Q 040099 542 PR---ILLLDEAT-SALDSESGRMVQEALDRVMINRTTVIVSHRLSLI 585 (1236)
Q Consensus 542 p~---ililDE~t-s~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 585 (1236)
|+ +|++|||| ++||+..... ++.+..+.++|+|.|+.+.+
T Consensus 137 ~~~~vlL~ldePt~~~L~~~d~~~----lk~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 137 NRVQCCLYFIAPSGHGLKPLDIEF----MKRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp C-CCEEEEECCC-CCSCCHHHHHH----HHHHTTTSEEEEEEESTTSS
T ss_pred CCeeEEEEEecCcccCCCHHHHHH----HHHHhccCcEEEEEEcccCc
Confidence 99 99999999 6999887432 33444577888888876653
No 200
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.59 E-value=3.1e-15 Score=154.63 Aligned_cols=79 Identities=23% Similarity=0.312 Sum_probs=71.1
Q ss_pred CCCCChHHHHHHHHHHHhc----CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEE--
Q 040099 521 GIQLSGGQKQRVAIARAMI----KDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVI-- 594 (1236)
Q Consensus 521 g~~LSgGqkqRiaiARal~----~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl-- 594 (1236)
...||||||||++|||+++ ++|+++||||||++||+.++..+.+.|+++.++.++|+|||+...+..||+++.+
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence 3579999999999999995 6689999999999999999999999999988888999999999988889999865
Q ss_pred ECCEE
Q 040099 595 QQGKI 599 (1236)
Q Consensus 595 ~~G~i 599 (1236)
++|..
T Consensus 142 ~~g~s 146 (173)
T 3kta_B 142 RDGVS 146 (173)
T ss_dssp ETTEE
T ss_pred cCCEE
Confidence 56653
No 201
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.59 E-value=6.2e-16 Score=197.25 Aligned_cols=167 Identities=16% Similarity=0.196 Sum_probs=107.6
Q ss_pred cEEEEeEEEECC----CCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHH
Q 040099 384 DIELKDVNFSYP----ARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWI 459 (1236)
Q Consensus 384 ~i~~~~v~f~y~----~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~ 459 (1236)
.+++++...-.= ..++..|++|+||++++|++++|+|||||||||+++++.+..-.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~-------------------- 699 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM-------------------- 699 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH--------------------
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH--------------------
Confidence 577777543220 11246799999999999999999999999999999998753210
Q ss_pred hcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 040099 460 REKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI 539 (1236)
Q Consensus 460 r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~ 539 (1236)
.+.-.+||++..-+ .+.+++ +. ..++.+ .+..+...+|+|++|+..|+|+ +
T Consensus 700 aq~g~~vpa~~~~i--~~~d~i-~~--------------~ig~~d-----------~l~~~~stfs~em~~~~~il~~-a 750 (918)
T 3thx_B 700 AQIGSYVPAEEATI--GIVDGI-FT--------------RMGAAD-----------NIYKGRSTFMEELTDTAEIIRK-A 750 (918)
T ss_dssp HHHTCCBSSSEEEE--ECCSEE-EE--------------EC---------------------CCHHHHHHHHHHHHHH-C
T ss_pred hhcCccccchhhhh--hHHHHH-HH--------------hCChHH-----------HHHHhHHHhhHHHHHHHHHHHh-c
Confidence 00011222221000 000000 00 001111 1112234789999999999999 8
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHH-HHHHHHc--cCceEEEEecCchhHhhcCeEEE-EECCEE
Q 040099 540 KDPRILLLDEATSALDSESGRMVQ-EALDRVM--INRTTVIVSHRLSLIRNANIIAV-IQQGKI 599 (1236)
Q Consensus 540 ~~p~ililDE~ts~lD~~~~~~i~-~~l~~~~--~~~t~i~itH~~~~~~~ad~i~v-l~~G~i 599 (1236)
.+|+++||||||+++|+.....+. ..++.+. .|.|+|++||+++....||+.-- +.++++
T Consensus 751 ~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~~~~v~n~~~ 814 (918)
T 3thx_B 751 TSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHM 814 (918)
T ss_dssp CTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHTTTTEEEEEE
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhcccceEEEEE
Confidence 999999999999999999888776 5555553 47899999999988776776421 344444
No 202
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.58 E-value=3.1e-15 Score=154.60 Aligned_cols=79 Identities=27% Similarity=0.312 Sum_probs=71.5
Q ss_pred CCCCChhHHHHHHHHHHHc----cCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEE--
Q 040099 1132 GVQLSGGQKQRVAIARAIV----KEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVV-- 1205 (1236)
Q Consensus 1132 G~~LSGGQrQRlaLARALl----r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl-- 1205 (1236)
...||||||||++|||++. ++|+++||||||++||+.+...+.+.|++..++.++|+||||..++..||+|+++
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence 3679999999999999996 5679999999999999999999999999988888999999999999999999855
Q ss_pred eCCEE
Q 040099 1206 SQGMI 1210 (1236)
Q Consensus 1206 ~~G~I 1210 (1236)
++|..
T Consensus 142 ~~g~s 146 (173)
T 3kta_B 142 RDGVS 146 (173)
T ss_dssp ETTEE
T ss_pred cCCEE
Confidence 57753
No 203
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.58 E-value=1.6e-17 Score=187.08 Aligned_cols=129 Identities=12% Similarity=0.068 Sum_probs=95.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCC---C
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTH---A 488 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~---~ 488 (1236)
++.+++|+|+||||||||+++|.+++.+. | . . ++.+.+|+||+++++.++++|+.++.++ .
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccchh
Confidence 57799999999999999999999999764 2 0 0 4456677999999999999999876421 0
Q ss_pred CHHHHHHHHHHhccHHHHHhCCCCcccc------ccCCCCCCChHHHHHHHHH--HHhcCCCCEEEEeCcCCCCCHHH
Q 040099 489 TKEEIQAAAEAANASHFIKNLPQGLDTN------VGEHGIQLSGGQKQRVAIA--RAMIKDPRILLLDEATSALDSES 558 (1236)
Q Consensus 489 ~~~~~~~~~~~~~~~~~i~~l~~g~~t~------~g~~g~~LSgGqkqRiaiA--Ral~~~p~ililDE~ts~lD~~~ 558 (1236)
......++.+...+.+++..+++|++|. +...+.++||||+||+++| |++ +|+|+|+||+|+++|+.+
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0000011222334567889999998764 4566789999999999998 666 999999999999999864
No 204
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.58 E-value=2.3e-16 Score=169.57 Aligned_cols=158 Identities=16% Similarity=0.251 Sum_probs=97.3
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhccc-----CCCCcEEEE-------CCeecc
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFY-----DPSSGHITL-------DGVEIQ 1078 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~-----~~~~G~I~i-------dG~di~ 1078 (1236)
|+++|++|+|+. ++|++ |.+++|++++|+|++|||||||++.|.|.. .|+.|.+.+ ++..+-
T Consensus 4 l~~~~~~~~~~~----~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMSA----PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEEE----SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheeec----CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 789999999962 47888 999999999999999999999999999998 788888765 333332
Q ss_pred cCC-----------hHHHhcceEEEcCCCCC-------Chh----h-HHHHHHHHhhhchHHHhhhhchhh-hhcCCCCC
Q 040099 1079 KLQ-----------VKWLRQQMGVVSQEPVL-------FSD----T-IRANIAEMANANGFISGLQEGYDT-LVGERGVQ 1134 (1236)
Q Consensus 1079 ~i~-----------~~~lR~~i~~V~Qdp~L-------F~g----T-IreNL~~~a~~~~~i~~lp~Gldt-~vge~G~~ 1134 (1236)
+.+ .+.+++.++.+.|++.. ++. + ..+.+. .++.. .+... .++.+...
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~------~~~~~--~~~~~~~v~nK~D~ 149 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMI------EWAVD--SNIAVLVLLTKADK 149 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHH------HHHHH--TTCCEEEEEECGGG
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHH------HHHHH--cCCCeEEEEecccC
Confidence 211 12344444444443211 111 1 011111 11111 12221 13444557
Q ss_pred CChhHHHH-HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC
Q 040099 1135 LSGGQKQR-VAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMV 1182 (1236)
Q Consensus 1135 LSGGQrQR-laLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~ 1182 (1236)
+|+||||| +..+|+++++|+++++|||||++|......+.+.|.+...
T Consensus 150 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 150 LASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp SCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred CCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 99999999 8999999999999999999999999999999999987653
No 205
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.56 E-value=3.2e-16 Score=171.27 Aligned_cols=165 Identities=18% Similarity=0.096 Sum_probs=114.0
Q ss_pred cccccceeE-EecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhc---ceEEEcCCCCCChh
Q 040099 1026 IEVFRDLCL-TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ---QMGVVSQEPVLFSD 1101 (1236)
Q Consensus 1026 ~~vL~~is~-~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~---~i~~V~Qdp~LF~g 1101 (1236)
.+.|+++.. .+++|+.++|+||||||||||++.|.+...+.+|.+.+.+.+. +.+.+++ .+++.+|+....
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-- 83 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIEK-- 83 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBTT--
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhhC--
Confidence 357899998 8999999999999999999999999998888888888866543 2333332 344444432110
Q ss_pred hHHHHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC--EEEEecCCCCC--CHHHHHHHHHHH
Q 040099 1102 TIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK--ILLLDEATSAL--DIESERVVQDAL 1177 (1236)
Q Consensus 1102 TIreNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~--ILlLDEaTSaL--D~~te~~I~~~L 1177 (1236)
++ .+++.....++.... ....|.+|.++.+.+.+...+|+ +|++||||+.+ |+.....+.+.|
T Consensus 84 ----~~-------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l 150 (235)
T 2w0m_A 84 ----KL-------IIIDALMKEKEDQWS--LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYL 150 (235)
T ss_dssp ----TE-------EEEECCC----CTTB--CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHH
T ss_pred ----CE-------EEEeccccccCceee--ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHH
Confidence 10 000000000000000 12348999998888887778999 99999999888 998888888888
Q ss_pred HHHc--CCCeEEEEecCc--------hhhhh-cCEEEEEeCC
Q 040099 1178 DQVM--VDRTTLVVAHRL--------STIKN-AHLIAVVSQG 1208 (1236)
Q Consensus 1178 ~~~~--~~~TvI~IaHRl--------~ti~~-aD~I~Vl~~G 1208 (1236)
++.. .++|+|+++|.. ..+.. ||+|++|+..
T Consensus 151 ~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 151 KRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp HHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 7764 478999999999 44654 9999999864
No 206
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.56 E-value=1.3e-16 Score=179.61 Aligned_cols=114 Identities=13% Similarity=0.091 Sum_probs=90.5
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHH--------
Q 040099 1038 PGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAE-------- 1109 (1236)
Q Consensus 1038 ~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~-------- 1109 (1236)
++.+|||+|+||||||||+++|.+++++. | . . ++.+.+|+||+++|+.++++|+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccchh
Confidence 56889999999999999999999999864 2 0 1 556677799999999999999842
Q ss_pred ----------HhhhchHHHhhhhchhhh------hcCCCCCCChhHHHHHHHH--HHHccCCCEEEEecCCCCCCHHH
Q 040099 1110 ----------MANANGFISGLQEGYDTL------VGERGVQLSGGQKQRVAIA--RAIVKEPKILLLDEATSALDIES 1169 (1236)
Q Consensus 1110 ----------~a~~~~~i~~lp~Gldt~------vge~G~~LSGGQrQRlaLA--RALlr~p~ILlLDEaTSaLD~~t 1169 (1236)
...+.+++..+++|++|. +...+.++||||+||+++| |++ +|+|||+||+|+++|+++
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 234556788999998875 3455678999999999998 666 999999999999999865
No 207
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.56 E-value=1.1e-15 Score=166.85 Aligned_cols=166 Identities=14% Similarity=0.047 Sum_probs=112.9
Q ss_pred CccccceeE-EecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhc---ceEEEccCCCCCch
Q 040099 400 EQILNGFCL-LIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIRE---KIGLVSQEPVLLSS 475 (1236)
Q Consensus 400 ~~~l~~i~~-~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~---~i~~v~Q~~~l~~~ 475 (1236)
.+.|+++.. .+++|++++|+||||||||||++.+++...+.+|.+.+.+.+. +...+++ .+++.+|+...
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--- 82 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE--- 82 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT---
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh---
Confidence 467999988 8999999999999999999999999998888888887755432 2222222 23333332110
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCC--EEEEeCcCCC
Q 040099 476 SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPR--ILLLDEATSA 553 (1236)
Q Consensus 476 ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~--ililDE~ts~ 553 (1236)
+++.+-.. .. .... + ..+- ...|.+|.++...+.+...+|+ ++++||||+.
T Consensus 83 ---~~~~~~~~-~~--------------~~~~--~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 135 (235)
T 2w0m_A 83 ---KKLIIIDA-LM--------------KEKE--D----QWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSAL 135 (235)
T ss_dssp ---TTEEEEEC-CC--------------------C----TTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGG
T ss_pred ---CCEEEEec-cc--------------cccC--c----eeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHh
Confidence 01110000 00 0000 0 0011 1348999999888888778999 9999999988
Q ss_pred C--CHHHHHHHHHHHHHHc--cCceEEEEecCc--------hhHhh-cCeEEEEECCE
Q 040099 554 L--DSESGRMVQEALDRVM--INRTTVIVSHRL--------SLIRN-ANIIAVIQQGK 598 (1236)
Q Consensus 554 l--D~~~~~~i~~~l~~~~--~~~t~i~itH~~--------~~~~~-ad~i~vl~~G~ 598 (1236)
+ |+.....+.+.|+++. .+.|+|+++|.. ..+.. ||+|++|++.+
T Consensus 136 ~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 136 FLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp SSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 8 9988888888888774 378999999998 44654 99999998653
No 208
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.56 E-value=1.5e-16 Score=187.25 Aligned_cols=160 Identities=18% Similarity=0.133 Sum_probs=99.6
Q ss_pred ccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcc
Q 040099 1009 GEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQ 1088 (1236)
Q Consensus 1009 g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~ 1088 (1236)
+.|.++|++++|+.. .+++|+||+| +|||+||||||||++.|+|...+..| .+|.++...+ ...++.
T Consensus 10 ~~l~~~~l~~~y~~~---~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYRK---SVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTTT---TCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECCE---EEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeee
Confidence 468999999999743 5899999998 99999999999999999999876555 2444332211 112467
Q ss_pred eEEEcCCCCCC-hhhHHHHHHHHhhh------chHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC---EEEE
Q 040099 1089 MGVVSQEPVLF-SDTIRANIAEMANA------NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK---ILLL 1158 (1236)
Q Consensus 1089 i~~V~Qdp~LF-~gTIreNL~~~a~~------~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~---ILlL 1158 (1236)
+++++|++.++ ..||.||+.-.... ...+..+.+ .++.+.+||++||||++++|+ +|++
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~-----------~~~~~l~qr~~IaRal~~d~~~~vlL~l 145 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDS-----------KFEDYLNAESRVNRRQMPDNRVQCCLYF 145 (418)
T ss_dssp EECC------CEEEEEEECC-----------CHHHHHHHHH-----------HHHHHTTTSCC-CCCCCCCC-CCEEEEE
T ss_pred EEEEEecCCcccceeeeechhhhhhccchhhHHHHHHHHHH-----------HHHHHHHHHHHHHHHhccCCCeeEEEEE
Confidence 89999988766 45777776311100 011111122 244567789999999999999 9999
Q ss_pred ecCC-CCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhh
Q 040099 1159 DEAT-SALDIESERVVQDALDQVMVDRTTLVVAHRLSTI 1196 (1236)
Q Consensus 1159 DEaT-SaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti 1196 (1236)
|||| ++||+.... + ++.+..+.++|+|.|+.+++
T Consensus 146 dePt~~~L~~~d~~-~---lk~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 146 IAPSGHGLKPLDIE-F---MKRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp CCC-CCSCCHHHHH-H---HHHHTTTSEEEEEEESTTSS
T ss_pred ecCcccCCCHHHHH-H---HHHHhccCcEEEEEEcccCc
Confidence 9999 699987643 3 33334578999999988865
No 209
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.55 E-value=1.3e-16 Score=181.28 Aligned_cols=157 Identities=18% Similarity=0.125 Sum_probs=79.7
Q ss_pred eEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcc-cCCCCcEEEECCeecccCChHHHhcceEEE
Q 040099 1014 LRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRF-YDPSSGHITLDGVEIQKLQVKWLRQQMGVV 1092 (1236)
Q Consensus 1014 ~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~-~~~~~G~I~idG~di~~i~~~~lR~~i~~V 1092 (1236)
+|++..|.. ..+++|++|+| +|||+||+|||||++.|++. ..|.+| |.++|.++.. .. . ++.++++
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEE
Confidence 467888864 35899999998 99999999999999999998 888999 9999987753 11 1 4668999
Q ss_pred cCCCCCC-hhhHHHHHHHH------hhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCC-
Q 040099 1093 SQEPVLF-SDTIRANIAEM------ANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSA- 1164 (1236)
Q Consensus 1093 ~Qdp~LF-~gTIreNL~~~------a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSa- 1164 (1236)
+|++.++ .-||.||.... ......+..+.+.++..+ .++|||||||+++|||+. +|++||||++
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~----~~~sgg~rqrv~~ara~~----ll~ldePt~~~ 140 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYL----HDESGLNRRHIIDNRVHC----CFYFISPFGHG 140 (301)
T ss_dssp EC---CCEEEEEEEEC-----------CTTHHHHHHHHHHHHH----HHHTSSCCTTCCCCCCCE----EEEEECSSSSS
T ss_pred ecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHH----HHhCHHhhhhhhhhhhhh----eeeeecCcccC
Confidence 9986543 33555553210 011122222222233333 358999999999999985 9999999985
Q ss_pred CCHHHHHHHHHHHHHHcC--CCeEEEEecCchh
Q 040099 1165 LDIESERVVQDALDQVMV--DRTTLVVAHRLST 1195 (1236)
Q Consensus 1165 LD~~te~~I~~~L~~~~~--~~TvI~IaHRl~t 1195 (1236)
||+... +.+++..+ +.++|+..|++.+
T Consensus 141 Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 141 LKPLDV----AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp CCHHHH----HHHHHHTTTSCEEEEECCGGGSC
T ss_pred CCHHHH----HHHHHHHhcCCEEEEEEeCCCCC
Confidence 999874 33444333 4577777998753
No 210
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.54 E-value=2.1e-15 Score=190.93 Aligned_cols=167 Identities=16% Similarity=0.193 Sum_probs=112.4
Q ss_pred cEEEEeEEEECCCC----CCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCcEEEECCeecCCCCHHH
Q 040099 384 DIELKDVNFSYPAR----PDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP-QAGEVLIDGVNLKEFQLKW 458 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~----~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-~~G~i~~~g~~~~~~~~~~ 458 (1236)
.+++++.. +|-- +++.+++|++|+ ++|++++|+|||||||||++|+++|+..+ ..|. .+..
T Consensus 577 ~i~i~~~r--HP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa----- 642 (800)
T 1wb9_A 577 GIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA----- 642 (800)
T ss_dssp CEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS-----
T ss_pred CEEEEecc--ccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch-----
Confidence 47777653 2310 235699999999 99999999999999999999999997432 2231 1111
Q ss_pred HhcceEEEccCCCCCch-hHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 040099 459 IREKIGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARA 537 (1236)
Q Consensus 459 ~r~~i~~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARa 537 (1236)
-+..+++++| +|.. ++.||+..+ . ..+|+|+++ ++.+..
T Consensus 643 ~~~~i~~~~~---i~~~~~~~d~l~~~----------------------------~--------stf~~e~~~-~~~il~ 682 (800)
T 1wb9_A 643 QKVEIGPIDR---IFTRVGAADDLASG----------------------------R--------STFMVEMTE-TANILH 682 (800)
T ss_dssp SEEEECCCCE---EEEEEC-----------------------------------------------CHHHHHH-HHHHHH
T ss_pred hcccceeHHH---HHhhCCHHHHHHhh----------------------------h--------hhhhHHHHH-HHHHHH
Confidence 1235677666 4432 555554321 0 245666664 444445
Q ss_pred hcCCCCEEEEeCcCCCCCHHHHHHH-HHHHHHHc--cCceEEEEecCchhHhhcCeEEEEECCEEEEEeC
Q 040099 538 MIKDPRILLLDEATSALDSESGRMV-QEALDRVM--INRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGT 604 (1236)
Q Consensus 538 l~~~p~ililDE~ts~lD~~~~~~i-~~~l~~~~--~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~ 604 (1236)
.+.+|+++||||||+++|+.....+ .+.++.+. .+.|+|++||+.+....||++..+++|++.....
T Consensus 683 ~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~~~ 752 (800)
T 1wb9_A 683 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALEH 752 (800)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEEE
T ss_pred hccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEEEc
Confidence 6899999999999999998765554 55666654 3789999999998877899888889998865443
No 211
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.52 E-value=5e-15 Score=188.89 Aligned_cols=152 Identities=15% Similarity=0.122 Sum_probs=103.1
Q ss_pred ccEEEeEEEEECC----CCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHH
Q 040099 1009 GEVQFLRVSFKYP----TRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKW 1084 (1236)
Q Consensus 1009 g~I~f~~Vsf~Y~----~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~ 1084 (1236)
+.|.+++...-.- ...+..|++|+||++++|+.++|+|||||||||+++++.++.-.
T Consensus 639 ~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~------------------- 699 (918)
T 3thx_B 639 RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM------------------- 699 (918)
T ss_dssp CEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH-------------------
T ss_pred CcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH-------------------
Confidence 3577766432210 11135699999999999999999999999999999998654211
Q ss_pred HhcceEEEcCCC-------CCChh-hHHHHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEE
Q 040099 1085 LRQQMGVVSQEP-------VLFSD-TIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKIL 1156 (1236)
Q Consensus 1085 lR~~i~~V~Qdp-------~LF~g-TIreNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~IL 1156 (1236)
.+.-.+||++. .+|.. .+.+| +..+-..+|+|++|+..++|+ +.+|++|
T Consensus 700 -aq~g~~vpa~~~~i~~~d~i~~~ig~~d~---------------------l~~~~stfs~em~~~~~il~~-a~~p~Ll 756 (918)
T 3thx_B 700 -AQIGSYVPAEEATIGIVDGIFTRMGAADN---------------------IYKGRSTFMEELTDTAEIIRK-ATSQSLV 756 (918)
T ss_dssp -HHHTCCBSSSEEEEECCSEEEEEC-------------------------------CCHHHHHHHHHHHHHH-CCTTCEE
T ss_pred -hhcCccccchhhhhhHHHHHHHhCChHHH---------------------HHHhHHHhhHHHHHHHHHHHh-ccCCCEE
Confidence 01111233322 11110 11121 122335689999999999999 8999999
Q ss_pred EEecCCCCCCHHHHHHHH-HHHHHHc--CCCeEEEEecCchhhhhcCEE
Q 040099 1157 LLDEATSALDIESERVVQ-DALDQVM--VDRTTLVVAHRLSTIKNAHLI 1202 (1236)
Q Consensus 1157 lLDEaTSaLD~~te~~I~-~~L~~~~--~~~TvI~IaHRl~ti~~aD~I 1202 (1236)
||||||+++|+.....+. ..++.+. .++|+|++||.++....||+.
T Consensus 757 LLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 757 ILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhc
Confidence 999999999998887776 5555442 489999999999887666643
No 212
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.51 E-value=8.2e-16 Score=162.81 Aligned_cols=145 Identities=14% Similarity=0.103 Sum_probs=99.0
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHHhhhc
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANAN 1114 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~~ 1114 (1236)
.+++|+.++|+|||||||||++++|.+. |..|.|.+||.++..... -++.+++++|++. ...|+.+|+...+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVAGRY 79 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHHHHH
Confidence 5789999999999999999999999998 678999999988754321 1345788999765 5679999986332210
Q ss_pred ------hHHHhhh--hchhhhh--cCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCC
Q 040099 1115 ------GFISGLQ--EGYDTLV--GERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR 1184 (1236)
Q Consensus 1115 ------~~i~~lp--~Gldt~v--ge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~ 1184 (1236)
..++... .+++..- +.....+|+|++|++++||++.++|+++ +|++..+.+.+.++......
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~~ 151 (191)
T 1zp6_A 80 AKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGAFE 151 (191)
T ss_dssp HHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGGG
T ss_pred hccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCccc
Confidence 0011100 0111111 3344579999999999999999999987 58877777776665432222
Q ss_pred eEEEEecC
Q 040099 1185 TTLVVAHR 1192 (1236)
Q Consensus 1185 TvI~IaHR 1192 (1236)
++++.+|.
T Consensus 152 ~~~i~t~~ 159 (191)
T 1zp6_A 152 HHVLPVSG 159 (191)
T ss_dssp GGEEECTT
T ss_pred ccEEECCC
Confidence 34444543
No 213
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.50 E-value=4.3e-17 Score=175.40 Aligned_cols=140 Identities=17% Similarity=0.193 Sum_probs=99.0
Q ss_pred ecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHH-------
Q 040099 1036 IPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA------- 1108 (1236)
Q Consensus 1036 I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~------- 1108 (1236)
.++|+++||+||||||||||+++|.|+++|+ | ..+++|+||.+.++.+.++|+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5789999999999999999999999999875 3 2355555655555555554431
Q ss_pred ----HHhhhchHHHhhhhc--hhhhhcCCCCCCChhHHHHHHHH-HHHccCCCEEEEecCC-----------CCCCHHHH
Q 040099 1109 ----EMANANGFISGLQEG--YDTLVGERGVQLSGGQKQRVAIA-RAIVKEPKILLLDEAT-----------SALDIESE 1170 (1236)
Q Consensus 1109 ----~~a~~~~~i~~lp~G--ldt~vge~G~~LSGGQrQRlaLA-RALlr~p~ILlLDEaT-----------SaLD~~te 1170 (1236)
+...+.+++..++.| +++++.+.+..+|+||+||+++| |+++.+++++++|||. .-+|...+
T Consensus 80 ~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~ 159 (208)
T 3c8u_A 80 PETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMA 159 (208)
T ss_dssp GGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHH
T ss_pred CchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHH
Confidence 112233456666665 67788899999999999999999 9999999999999985 33566666
Q ss_pred HHHHHHHHHHc-CCCeEEEEecCch
Q 040099 1171 RVVQDALDQVM-VDRTTLVVAHRLS 1194 (1236)
Q Consensus 1171 ~~I~~~L~~~~-~~~TvI~IaHRl~ 1194 (1236)
..+++.+++.. .|+|.-.+.||..
T Consensus 160 ~~~~R~~~R~~~~g~t~~~~~~~~~ 184 (208)
T 3c8u_A 160 DLEARLVQRWLDHGLNHDAAVARAQ 184 (208)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 65555555432 2444444444443
No 214
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.50 E-value=1.6e-15 Score=163.69 Aligned_cols=150 Identities=14% Similarity=0.208 Sum_probs=106.7
Q ss_pred eEEecCCCEEEEEcCCCCChHHHHHHHhcccCC--CCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHH
Q 040099 1033 CLTIPPGKTIALVGESGSGKSTVISLLQRFYDP--SSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEM 1110 (1236)
Q Consensus 1033 s~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~--~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~ 1110 (1236)
.-+.++|+.++|+||||||||||+++|.|+++| ..|+|.+++.+.+. ..++.++|++|++.+|...+.+
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~----- 80 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISR----- 80 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHT-----
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhc-----
Confidence 346799999999999999999999999999986 68999998876543 2467899999999877642211
Q ss_pred hhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Q 040099 1111 ANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVA 1190 (1236)
Q Consensus 1111 a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~Ia 1190 (1236)
.+|++.+. + .| ++.|-.++. ++.++.+++++||| ||+.+...+.+.+. +++|+++++
T Consensus 81 ---~~f~E~~~------~--~~-~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~---~~~tI~i~t 137 (219)
T 1s96_A 81 ---DAFLEHAE------V--FG-NYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP---HARSIFILP 137 (219)
T ss_dssp ---TCEEEEEE------E--TT-EEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT---TCEEEEEEC
T ss_pred ---CHHHHHHH------H--Hh-ccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc---CCEEEEEEC
Confidence 01111110 0 00 011111222 56677889999999 99999999998875 578999999
Q ss_pred cCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 040099 1191 HRLSTIKNAHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1191 HRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|+++.++. |+ +..| .|+++++.++
T Consensus 138 h~~~~l~~--Rl--~~rG----~~~~e~i~~r 161 (219)
T 1s96_A 138 PSKIELDR--RL--RGRG----QDSEEVIAKR 161 (219)
T ss_dssp SSHHHHHH--HH--HTTS----CSCHHHHHHH
T ss_pred CCHHHHHH--HH--HHcC----CCCHHHHHHH
Confidence 99998876 43 6777 6888888754
No 215
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.50 E-value=1.1e-15 Score=165.02 Aligned_cols=143 Identities=11% Similarity=0.096 Sum_probs=101.2
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC--CCcEEEECCeecCCCCHHHHhcceEEEccCCCCCch-hH----HH
Q 040099 407 CLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP--QAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SI----RD 479 (1236)
Q Consensus 407 ~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~--~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti----~~ 479 (1236)
.-+.++|++++|+||||||||||+++|+|+++| ..|+|.+.+.+.+. ..++.++|++|++.+|.. ++ .|
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E 85 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLE 85 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHH
Confidence 446799999999999999999999999999986 68999988866543 235679999999887765 44 35
Q ss_pred HHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHH
Q 040099 480 NIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESG 559 (1236)
Q Consensus 480 ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~ 559 (1236)
|+.+.... | |-.+++ ++.++..++++||| ||+.+.
T Consensus 86 ~~~~~~~~-------------------------y------------g~~~~~---v~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 86 HAEVFGNY-------------------------Y------------GTSREA---IEQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp EEEETTEE-------------------------E------------EEEHHH---HHHHHTTTCEEEEE-----CCHHHH
T ss_pred HHHHHhcc-------------------------C------------CCCHHH---HHHHHhcCCeEEEE-----ECHHHH
Confidence 54432110 0 000111 23344457999999 999999
Q ss_pred HHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCccccc
Q 040099 560 RMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELL 609 (1236)
Q Consensus 560 ~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~ 609 (1236)
..+.+.+. ++.|+++++|+++.+.. |+ +++| .++.+++.
T Consensus 121 ~~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~ 159 (219)
T 1s96_A 121 QQIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIA 159 (219)
T ss_dssp HHHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHH
T ss_pred HHHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHH
Confidence 99998775 57899999999998865 33 5666 45655554
No 216
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.49 E-value=4e-14 Score=159.41 Aligned_cols=151 Identities=19% Similarity=0.218 Sum_probs=100.5
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHh-cCCCC
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIA-YGKTH 487 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~-~g~~~ 487 (1236)
.+++|++++|+||||||||||++.+++... .|++. .|.+... +..+.|+..+... ..+.+++. ++. +
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-~ 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-H 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT-T
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh-h
Confidence 478999999999999999999999998654 56663 3443311 3467888776532 23333322 222 1
Q ss_pred CCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCC--CCCHHHH---HHH
Q 040099 488 ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATS--ALDSESG---RMV 562 (1236)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts--~lD~~~~---~~i 562 (1236)
....+..+..+... +....+.....||+||+|++ |+++.+|+++|+||||+ ++|.... ..+
T Consensus 94 ~~~~~~~~~~~~l~-----------l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~ 159 (279)
T 1nlf_A 94 LSAEERQAVADGLL-----------IQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQV 159 (279)
T ss_dssp SCHHHHHHHHHHEE-----------ECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHH
T ss_pred cChhhhhhccCceE-----------EeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHH
Confidence 23333333333322 23334556778999998875 68889999999999999 9997543 677
Q ss_pred HHHHHHHc--cCceEEEEecCchhH
Q 040099 563 QEALDRVM--INRTTVIVSHRLSLI 585 (1236)
Q Consensus 563 ~~~l~~~~--~~~t~i~itH~~~~~ 585 (1236)
.+.|+++. .|.|+|+++|.....
T Consensus 160 ~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 160 IGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHHcCCEEEEEecCCCcc
Confidence 77787774 388999999987654
No 217
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.49 E-value=2e-15 Score=176.39 Aligned_cols=179 Identities=13% Similarity=0.130 Sum_probs=114.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcE--EEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhc
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTI--AALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIRE 461 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~--~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~ 461 (1236)
.+++++ +++|++ .+ |+++||++++|++ +|||||||||||||+++|+|+. ++|.++........++
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 355666 788852 35 9999999999999 9999999999999999999984 4455544333333456
Q ss_pred ceEEEccCCCCCc-hhHHHHHhcCCCCCCHHH----HHHHHHHhccHHHHHhC-------CCCcccc-------ccCCCC
Q 040099 462 KIGLVSQEPVLLS-SSIRDNIAYGKTHATKEE----IQAAAEAANASHFIKNL-------PQGLDTN-------VGEHGI 522 (1236)
Q Consensus 462 ~i~~v~Q~~~l~~-~ti~~ni~~g~~~~~~~~----~~~~~~~~~~~~~i~~l-------~~g~~t~-------~g~~g~ 522 (1236)
.++|++|++.++. .|+.||+.+|... +.+. +.+.++ ....+++... +..-|+. +-..+.
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~~-~~~~~~~~i~~~i~-~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~ 160 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQI-NKEDSYKPIVEFID-AQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGH 160 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC-C-CHHHHSHHHHHHHH-HHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-
T ss_pred eEEEEeecCccccccchhhhhhhhhcc-ccchhhhHHHHHHH-HHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCC
Confidence 8999999998874 5999999998642 3221 111111 1122333322 1112222 223445
Q ss_pred CCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHH-Hc-cCceEEEEec
Q 040099 523 QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDR-VM-INRTTVIVSH 580 (1236)
Q Consensus 523 ~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~-~~-~~~t~i~itH 580 (1236)
.|+-.+ +.|+++|..+++|+++|+|+..|.+.....+.+.+++ +. .|.+++.++.
T Consensus 161 ~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 161 SLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp --CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred CCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 677766 8999999999999999999999998877778888876 54 3667777764
No 218
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.49 E-value=5e-14 Score=152.42 Aligned_cols=152 Identities=13% Similarity=0.109 Sum_probs=98.2
Q ss_pred CccccceeE-EecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHH
Q 040099 400 EQILNGFCL-LIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIR 478 (1236)
Q Consensus 400 ~~~l~~i~~-~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~ 478 (1236)
.+.|+++.. .+++|++++|+||||||||||++.+++ .+..+.++++. +..+-...+.
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~--------------------~~~~~~~~~~ 63 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDT--------------------EGGFSPERLV 63 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEES--------------------SCCCCHHHHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEEC--------------------CCCCCHHHHH
Confidence 356777766 799999999999999999999999999 33333344433 2211111222
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChH--HHHHHHHHHHhcCC-CCEEEEeCcCCCCC
Q 040099 479 DNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGG--QKQRVAIARAMIKD-PRILLLDEATSALD 555 (1236)
Q Consensus 479 ~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgG--qkqRiaiARal~~~-p~ililDE~ts~lD 555 (1236)
+.... .....++ +...+ .+ ..+|++ |+|+++.+|+++++ |+++|+||||+.+|
T Consensus 64 ~~~~~--~~~~~~~------------~~~~~------~~----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 64 QMAET--RGLNPEE------------ALSRF------IL----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYR 119 (220)
T ss_dssp HHHHT--TTCCHHH------------HHHHE------EE----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTT
T ss_pred HHHHh--cCCChHH------------HhhcE------EE----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhh
Confidence 21110 0111111 11111 01 123444 47799999999986 99999999999999
Q ss_pred HHHH--------HHHHHHHHHHcc--CceEEEEecCch-------------hHh-hcCeEEEEECC
Q 040099 556 SESG--------RMVQEALDRVMI--NRTTVIVSHRLS-------------LIR-NANIIAVIQQG 597 (1236)
Q Consensus 556 ~~~~--------~~i~~~l~~~~~--~~t~i~itH~~~-------------~~~-~ad~i~vl~~G 597 (1236)
+..+ ..+.+.|+++.+ +.|+|+++|... .+. .||+|++|++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 120 AEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 7432 335555666643 789999999765 344 49999999764
No 219
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.48 E-value=2.4e-14 Score=154.95 Aligned_cols=151 Identities=15% Similarity=0.101 Sum_probs=98.6
Q ss_pred ccccceeE-EecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHH
Q 040099 1027 EVFRDLCL-TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRA 1105 (1236)
Q Consensus 1027 ~vL~~is~-~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIre 1105 (1236)
+.|+++.. .+++|+.++|+||+|||||||++.|.+ .+..+.++++..+ ..+.+.+++.. +...+....
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~~~~----~~~~~~~~~--- 75 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLVQMA----ETRGLNPEE--- 75 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHHHHH----HTTTCCHHH---
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHHHHH----HhcCCChHH---
Confidence 46777776 799999999999999999999999998 4344455555432 12222222211 000000000
Q ss_pred HHHHHhhhchHHHhhhhchhhhhcCCCCCCChh--HHHHHHHHHHHccC-CCEEEEecCCCCCCHHHH--------HHHH
Q 040099 1106 NIAEMANANGFISGLQEGYDTLVGERGVQLSGG--QKQRVAIARAIVKE-PKILLLDEATSALDIESE--------RVVQ 1174 (1236)
Q Consensus 1106 NL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGG--QrQRlaLARALlr~-p~ILlLDEaTSaLD~~te--------~~I~ 1174 (1236)
+...+ .+. ..|++ |+|+++.+|+++++ |+++|+||||+.+|+..+ ..+.
T Consensus 76 ----------~~~~~------~~~----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~ 135 (220)
T 2cvh_A 76 ----------ALSRF------ILF----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQL 135 (220)
T ss_dssp ----------HHHHE------EEE----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHH
T ss_pred ----------HhhcE------EEE----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHH
Confidence 11100 111 23444 47899999999986 999999999999998543 3344
Q ss_pred HHHHHHcC--CCeEEEEecCch-------------hhh-hcCEEEEEeCC
Q 040099 1175 DALDQVMV--DRTTLVVAHRLS-------------TIK-NAHLIAVVSQG 1208 (1236)
Q Consensus 1175 ~~L~~~~~--~~TvI~IaHRl~-------------ti~-~aD~I~Vl~~G 1208 (1236)
+.|++..+ ++|+|+++|... .+. .||+|++|+..
T Consensus 136 ~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 136 QVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 44665543 789999999876 344 59999999754
No 220
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.48 E-value=1.4e-15 Score=160.95 Aligned_cols=139 Identities=17% Similarity=0.060 Sum_probs=91.6
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCC
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHA 488 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~ 488 (1236)
.+++|++++|+||||||||||+++|+|. |+.|.|.++|.++..... .++.++|++|++. .+.++.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~--- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVA--- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHH---
Confidence 4789999999999999999999999998 789999999977532211 1344688888755 3568899986521
Q ss_pred CHHHHHHHHHHhccHHHHHhCC--CCccccc--cCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHH
Q 040099 489 TKEEIQAAAEAANASHFIKNLP--QGLDTNV--GEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQE 564 (1236)
Q Consensus 489 ~~~~~~~~~~~~~~~~~i~~l~--~g~~t~~--g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~ 564 (1236)
.. ..+ .+....++.+. .+++... +.....+|+|++||+++||++.++|+++ +|+...+.+.+
T Consensus 77 ---~~--~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 77 ---GR--YAK-EGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp ---HH--HHH-TSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred ---HH--Hhc-cCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 00 010 00000000000 0111111 3334579999999999999999999876 58877666666
Q ss_pred HHHHH
Q 040099 565 ALDRV 569 (1236)
Q Consensus 565 ~l~~~ 569 (1236)
.+..+
T Consensus 143 ~~~~l 147 (191)
T 1zp6_A 143 QFADL 147 (191)
T ss_dssp HTTCC
T ss_pred HHhcc
Confidence 65443
No 221
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.47 E-value=2.1e-16 Score=181.16 Aligned_cols=148 Identities=16% Similarity=0.177 Sum_probs=109.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC--------CCCCcEEEECCeecCCCC---------------HHHHhcceEEE---
Q 040099 413 GTIAALVGTSGSGKSTVISLIQRFY--------DPQAGEVLIDGVNLKEFQ---------------LKWIREKIGLV--- 466 (1236)
Q Consensus 413 g~~~~ivG~sGsGKSTl~~ll~~~~--------~~~~G~i~~~g~~~~~~~---------------~~~~r~~i~~v--- 466 (1236)
=++++|+|+||||||||+|.|+|.+ .|+.|+|.+||.++...+ ...+++.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 3589999999999999999999998 789999999999987653 24567789888
Q ss_pred ccCCCC-CchhHHHHHhcCCCCCCHHHH---HHHHHHh---------ccHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 040099 467 SQEPVL-LSSSIRDNIAYGKTHATKEEI---QAAAEAA---------NASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVA 533 (1236)
Q Consensus 467 ~Q~~~l-~~~ti~~ni~~g~~~~~~~~~---~~~~~~~---------~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRia 533 (1236)
+|++.+ |+.++.||..++.|..-...+ .+..+.. ++.++...+ .+||+|||||+.
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------------~~ls~g~~Q~~~ 151 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------------NQFTIAQSQVGY 151 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------------HHCHHHHHHHHT
T ss_pred HhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------------hhchHHHHHHHh
Confidence 688764 677999999887542100111 0111111 111222111 158999999999
Q ss_pred HHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCch
Q 040099 534 IARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLS 583 (1236)
Q Consensus 534 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~ 583 (1236)
.+++++.+|+++ ||| +.+.+.++++..+.|+++++|+..
T Consensus 152 ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 152 ADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp CSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred CCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 999999999987 998 677778887777889999999743
No 222
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.46 E-value=1.2e-14 Score=184.04 Aligned_cols=166 Identities=14% Similarity=0.149 Sum_probs=110.2
Q ss_pred ccEEEeEEEEECCCC----CCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCC-CCcEEEECCeecccCChH
Q 040099 1009 GEVQFLRVSFKYPTR----PHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP-SSGHITLDGVEIQKLQVK 1083 (1236)
Q Consensus 1009 g~I~f~~Vsf~Y~~~----~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~-~~G~I~idG~di~~i~~~ 1083 (1236)
+.|.+++. ++|-- .+..+++|+||+ ++|+.++|+|||||||||+++++.++.-+ ..|. .+. .
T Consensus 576 ~~i~i~~~--rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vp---a- 642 (800)
T 1wb9_A 576 PGIRITEG--RHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVP---A- 642 (800)
T ss_dssp SCEEEEEE--CCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBS---S-
T ss_pred CCEEEEec--cccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccc---h-
Confidence 35666654 34410 134689999999 99999999999999999999999997532 2231 111 1
Q ss_pred HHhcceEEEcCCCCCCh-hhHHHHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCC
Q 040099 1084 WLRQQMGVVSQEPVLFS-DTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEAT 1162 (1236)
Q Consensus 1084 ~lR~~i~~V~Qdp~LF~-gTIreNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaT 1162 (1236)
-+.++++++| +|. -++.+|+.. | -..+|+|+++ ++.+...+.+|++|||||||
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~-------------~--------~stf~~e~~~-~~~il~~a~~psLlLLDEp~ 696 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLAS-------------G--------RSTFMVEMTE-TANILHNATEYSLVLMDEIG 696 (800)
T ss_dssp -SEEEECCCCE---EEEEEC--------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCC
T ss_pred -hcccceeHHH---HHhhCCHHHHHHh-------------h--------hhhhhHHHHH-HHHHHHhccCCCEEEEECCC
Confidence 1345777766 443 366666531 1 1246777665 44445568999999999999
Q ss_pred CCCCHHHHHHH-HHHHHHHc--CCCeEEEEecCchhhhhcCEEEEEeCCEEEEe
Q 040099 1163 SALDIESERVV-QDALDQVM--VDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEK 1213 (1236)
Q Consensus 1163 SaLD~~te~~I-~~~L~~~~--~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~ 1213 (1236)
+++|+.....+ ++.++.+. .++|+|++||..+....||++..+.+|++...
T Consensus 697 ~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 697 RGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred CCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 99888655544 55665553 37899999999988877888777777776543
No 223
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.45 E-value=1e-13 Score=155.99 Aligned_cols=146 Identities=14% Similarity=0.153 Sum_probs=98.1
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHHh-hh
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMA-NA 1113 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a-~~ 1113 (1236)
.+++|+.++|+||+|||||||++.+.+... .|.+. .|.+... +..+.|++.+... ..+.+++.... ..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~~~ 94 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGAHL 94 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHTTS
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHhhc
Confidence 478999999999999999999999998764 57664 3544321 3467788776543 33433432211 01
Q ss_pred c-----hHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCC--CCCHHHH---HHHHHHHHHHc--
Q 040099 1114 N-----GFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATS--ALDIESE---RVVQDALDQVM-- 1181 (1236)
Q Consensus 1114 ~-----~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTS--aLD~~te---~~I~~~L~~~~-- 1181 (1236)
. +..+.+ ++....+.....||+||+|++ |+++++|+++|+||||+ ++|..+. ..+.+.|+++.
T Consensus 95 ~~~~~~~~~~~l--~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~ 169 (279)
T 1nlf_A 95 SAEERQAVADGL--LIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAAD 169 (279)
T ss_dssp CHHHHHHHHHHE--EECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhhccCce--EEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHH
Confidence 0 011111 222333456678999998865 78899999999999999 9998554 66777777664
Q ss_pred CCCeEEEEecCchhh
Q 040099 1182 VDRTTLVVAHRLSTI 1196 (1236)
Q Consensus 1182 ~~~TvI~IaHRl~ti 1196 (1236)
.++|+|+|+|.....
T Consensus 170 ~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 170 TGCSIVFLHHASKGA 184 (279)
T ss_dssp HCCEEEEEEEC----
T ss_pred cCCEEEEEecCCCcc
Confidence 389999999987654
No 224
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.44 E-value=2.4e-16 Score=169.55 Aligned_cols=138 Identities=17% Similarity=0.182 Sum_probs=97.9
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcC-CCCC
Q 040099 410 IPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYG-KTHA 488 (1236)
Q Consensus 410 i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g-~~~~ 488 (1236)
.++|++++|+||||||||||+++|+|+++|+ | ..+++|+|+.+.++.+..+|+... ....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5789999999999999999999999999886 5 257888888888888777776421 1111
Q ss_pred CHHHHHHHHHHhccHHHHHhCCCC--ccccccCCCCCCChHHHHHHHHH-HHhcCCCCEEEEeCcCCCCCHHHHHHHHHH
Q 040099 489 TKEEIQAAAEAANASHFIKNLPQG--LDTNVGEHGIQLSGGQKQRVAIA-RAMIKDPRILLLDEATSALDSESGRMVQEA 565 (1236)
Q Consensus 489 ~~~~~~~~~~~~~~~~~i~~l~~g--~~t~~g~~g~~LSgGqkqRiaiA-Ral~~~p~ililDE~ts~lD~~~~~~i~~~ 565 (1236)
. .+.+...+.+++..++.| +++++.+++..+|+||+||+++| |+++.++.++++|||.- ..
T Consensus 80 ~-----~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~ 143 (208)
T 3c8u_A 80 P-----ETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RD 143 (208)
T ss_dssp G-----GGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GG
T ss_pred C-----chhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HH
Confidence 0 011111223344444444 77888999999999999999998 99999999888999841 01
Q ss_pred HHHHccCceEEEEecCchh
Q 040099 566 LDRVMINRTTVIVSHRLSL 584 (1236)
Q Consensus 566 l~~~~~~~t~i~itH~~~~ 584 (1236)
+.+. -.+++.+.+..+.
T Consensus 144 l~~~--~d~~i~vd~~~~~ 160 (208)
T 3c8u_A 144 LTAI--WDVSIRLEVPMAD 160 (208)
T ss_dssp GGGT--CSEEEEECCCHHH
T ss_pred HHHh--cCEEEEEeCCHHH
Confidence 1111 1367777777765
No 225
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.44 E-value=1.1e-15 Score=176.06 Aligned_cols=164 Identities=15% Similarity=0.224 Sum_probs=117.9
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCCh----HHHh
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQV----KWLR 1086 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~----~~lR 1086 (1236)
|+.++++++|.. ..+|+++||++++|++++|+|++|||||||++.|.|++.|++|+|.+.|.|+..... ...|
T Consensus 30 ie~~~~~~~~~~---~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 30 AESRRADHRAAV---RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HTCSSHHHHHHH---HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HeeCCcccccCh---HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 445566677742 358999999999999999999999999999999999999999999999999865432 3457
Q ss_pred cceEEEcCCCCCCh----------hhH---HHHHH--HH----------hh----------hchH------------HHh
Q 040099 1087 QQMGVVSQEPVLFS----------DTI---RANIA--EM----------AN----------ANGF------------ISG 1119 (1236)
Q Consensus 1087 ~~i~~V~Qdp~LF~----------gTI---reNL~--~~----------a~----------~~~~------------i~~ 1119 (1236)
+++++++|+|.+|. ||- +|.+. +. ++ ..++ .+.
T Consensus 107 ~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~ 186 (337)
T 2qm8_A 107 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQG 186 (337)
T ss_dssp GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------
T ss_pred hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHH
Confidence 88999999998885 333 33321 00 00 0000 000
Q ss_pred hhhch----h----hhhcC-CCCCCChhHHHHHHHHHHHcc------CCCEEEEecCCCCCCHHHHHHHHHHHHHHc
Q 040099 1120 LQEGY----D----TLVGE-RGVQLSGGQKQRVAIARAIVK------EPKILLLDEATSALDIESERVVQDALDQVM 1181 (1236)
Q Consensus 1120 lp~Gl----d----t~vge-~G~~LSGGQrQRlaLARALlr------~p~ILlLDEaTSaLD~~te~~I~~~L~~~~ 1181 (1236)
+..+. + +.++. ....+|+|++|+++.|++++. +|+++. ||++|.+.-..+.+.|.+..
T Consensus 187 i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 187 IKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 11110 0 00110 113478999999999999998 689887 99999999999999987754
No 226
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.42 E-value=2.3e-15 Score=172.43 Aligned_cols=144 Identities=16% Similarity=0.161 Sum_probs=103.8
Q ss_pred CEEEEEcCCCCChHHHHHHHhccc--------CCCCcEEEECCeecccCC---------------hHHHhcceEEE---c
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFY--------DPSSGHITLDGVEIQKLQ---------------VKWLRQQMGVV---S 1093 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~--------~~~~G~I~idG~di~~i~---------------~~~lR~~i~~V---~ 1093 (1236)
+.++|+|+||||||||++.|+|++ .|+.|+|.|||.++...+ ...+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 579999999999999999999998 789999999999997763 35677889887 7
Q ss_pred CCCC-CChhhHHHHHH-----HHhh-h--chHHH-hhh-hchhhhhcCC-----CCCCChhHHHHHHHHHHHccCCCEEE
Q 040099 1094 QEPV-LFSDTIRANIA-----EMAN-A--NGFIS-GLQ-EGYDTLVGER-----GVQLSGGQKQRVAIARAIVKEPKILL 1157 (1236)
Q Consensus 1094 Qdp~-LF~gTIreNL~-----~~a~-~--~~~i~-~lp-~Gldt~vge~-----G~~LSGGQrQRlaLARALlr~p~ILl 1157 (1236)
|++. .|+.++.||.. ..+. . ..... ..+ ++.-+.++-. -.++|+||+||.+.+|+++.+|+++
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k~dl~- 163 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVA- 163 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEECTTTC-
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEECcccC-
Confidence 8775 36777777752 1000 0 00000 000 0111111110 0158999999999999999999987
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCch
Q 040099 1158 LDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLS 1194 (1236)
Q Consensus 1158 LDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ 1194 (1236)
||| +.+.+.|++..++.|+++++|+..
T Consensus 164 -de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 164 -GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp -SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred -CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 988 677888888777899999999643
No 227
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.39 E-value=1.3e-15 Score=161.04 Aligned_cols=162 Identities=13% Similarity=0.108 Sum_probs=110.6
Q ss_pred CCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCC-hhhHHHHHHHHhhhchHH
Q 040099 1039 GKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLF-SDTIRANIAEMANANGFI 1117 (1236)
Q Consensus 1039 Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF-~gTIreNL~~~a~~~~~i 1117 (1236)
|+.++|+|||||||||+++.|.+ +.+|.+.+||.++... ..+++++|++..+ ..|+++|+...+.. +.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~ 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDLTVN--FL 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHHHHH--HH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHHHHH--HH
Confidence 68899999999999999999987 5689999998776432 2467788876433 45899998643321 11
Q ss_pred HhhhhchhhhhcC--------CCCCC--ChhHHHHHHHHH------HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc
Q 040099 1118 SGLQEGYDTLVGE--------RGVQL--SGGQKQRVAIAR------AIVKEPKILLLDEATSALDIESERVVQDALDQVM 1181 (1236)
Q Consensus 1118 ~~lp~Gldt~vge--------~G~~L--SGGQrQRlaLAR------ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~ 1181 (1236)
. .|.+..+.. .-..+ |+|++|++.++. +++++|+...+|+ ++|+...+. .+.++...
T Consensus 71 ~---~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~ 143 (189)
T 2bdt_A 71 L---AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKG 143 (189)
T ss_dssp H---TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTT
T ss_pred h---cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcC
Confidence 0 111111110 00124 888888888888 8889998888884 799988777 77777654
Q ss_pred -CCCeEEEEecC-chhhhh-cCEEEEEeCCEEEEecChhHHh
Q 040099 1182 -VDRTTLVVAHR-LSTIKN-AHLIAVVSQGMIVEKGSHESLI 1220 (1236)
Q Consensus 1182 -~~~TvI~IaHR-l~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl 1220 (1236)
.+.|+|..+|. ++++.. ||+|+ ++|+++..|+++-|-
T Consensus 144 ~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 144 IDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp CCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred CCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 35789999999 999876 99998 999999999988764
No 228
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.38 E-value=2.9e-13 Score=159.87 Aligned_cols=154 Identities=21% Similarity=0.261 Sum_probs=104.0
Q ss_pred ccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCC----HHH--HhcceEEEccCCCCCc-h
Q 040099 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQ----LKW--IREKIGLVSQEPVLLS-S 475 (1236)
Q Consensus 403 l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~----~~~--~r~~i~~v~Q~~~l~~-~ 475 (1236)
-+++||++++|++++|||+||||||||+++|+|++.|++|+|.++|.|..... ... .|++|+|++|++.++. .
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 36789999999999999999999999999999999999999999887764321 122 3678999999987664 5
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCC--CCCCChHHHHHHHHHHHhcC-CC-CEEEEeCcC
Q 040099 476 SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEH--GIQLSGGQKQRVAIARAMIK-DP-RILLLDEAT 551 (1236)
Q Consensus 476 ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~--g~~LSgGqkqRiaiARal~~-~p-~ililDE~t 551 (1236)
|+++||.++... +.+-.+ +|| .|.. -.+|-.--+||+.++|++.. .| .+|+..+||
T Consensus 363 tV~e~l~~a~~~-------------~~DvVL------IDT-aGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDat 422 (503)
T 2yhs_A 363 VIFDAIQAAKAR-------------NIDVLI------ADT-AGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAS 422 (503)
T ss_dssp HHHHHHHHHHHT-------------TCSEEE------ECC-CCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGG
T ss_pred HHHHHHHHHHhc-------------CCCEEE------EeC-CCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCc
Confidence 999999875311 000000 011 0110 00122233588999998754 45 366666688
Q ss_pred CCCCHHHHHHHHHHHHHHccCceEEEEec
Q 040099 552 SALDSESGRMVQEALDRVMINRTTVIVSH 580 (1236)
Q Consensus 552 s~lD~~~~~~i~~~l~~~~~~~t~i~itH 580 (1236)
++.|.... .+.+.+ ..+.|.+++||
T Consensus 423 tGq~al~~---ak~f~~-~~~itgvIlTK 447 (503)
T 2yhs_A 423 TGQNAVSQ---AKLFHE-AVGLTGITLTK 447 (503)
T ss_dssp GTHHHHHH---HHHHHH-HTCCSEEEEEC
T ss_pred ccHHHHHH---HHHHHh-hcCCCEEEEEc
Confidence 88665432 122222 13789999999
No 229
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.38 E-value=2.4e-14 Score=167.45 Aligned_cols=167 Identities=14% Similarity=0.122 Sum_probs=104.9
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCE--EEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhc
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKT--IALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~--vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~ 1087 (1236)
.++.++ +++|++. + |+++||+|++|+. +|||||||||||||+++|+|+. ++|.++...++...++
T Consensus 16 ~l~~~~-~~~y~~~---~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDSL---P-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECCe---e-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 355556 7788642 4 9999999999999 9999999999999999999994 5666665544445577
Q ss_pred ceEEEcCCCCCC-hhhHHHHHH---H------Hh--------hhchHHHhh-------hhchhhh-------hcCCCCCC
Q 040099 1088 QMGVVSQEPVLF-SDTIRANIA---E------MA--------NANGFISGL-------QEGYDTL-------VGERGVQL 1135 (1236)
Q Consensus 1088 ~i~~V~Qdp~LF-~gTIreNL~---~------~a--------~~~~~i~~l-------p~Gldt~-------vge~G~~L 1135 (1236)
.+++++|++.++ .-|+.||+. . .. ....++... +..-|+. |-..+..|
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l 162 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSL 162 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---
T ss_pred eEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCC
Confidence 899999998776 347777652 0 00 011111111 1111222 11233456
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHH-Hc-CCCeEEEEecC
Q 040099 1136 SGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQ-VM-VDRTTLVVAHR 1192 (1236)
Q Consensus 1136 SGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~-~~-~~~TvI~IaHR 1192 (1236)
+..+ +.++++|-.+++|+++||+|..|.+..-..+.+.+++ +. .|.+++.|+..
T Consensus 163 ~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 163 KSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 6665 7899999999999999999999998777777777776 33 46678888753
No 230
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.37 E-value=7.7e-13 Score=156.33 Aligned_cols=152 Identities=21% Similarity=0.286 Sum_probs=104.6
Q ss_pred cceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCC----hHH--HhcceEEEcCCCCCC-hhh
Q 040099 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ----VKW--LRQQMGVVSQEPVLF-SDT 1102 (1236)
Q Consensus 1030 ~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~----~~~--lR~~i~~V~Qdp~LF-~gT 1102 (1236)
+++||++++|++++|||+||||||||++.|.|++.+++|+|.++|.|+.... +.. .|++|++|+|++.++ ..|
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t 363 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV 363 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence 6789999999999999999999999999999999999999999988875431 122 477899999998765 569
Q ss_pred HHHHHHHHhhhchHHHhhhhchhhhhc-CCCC-----CCChhHHHHHHHHHHHccC-C-CEEEEecCCCCCCHHHHHHHH
Q 040099 1103 IRANIAEMANANGFISGLQEGYDTLVG-ERGV-----QLSGGQKQRVAIARAIVKE-P-KILLLDEATSALDIESERVVQ 1174 (1236)
Q Consensus 1103 IreNL~~~a~~~~~i~~lp~Gldt~vg-e~G~-----~LSGGQrQRlaLARALlr~-p-~ILlLDEaTSaLD~~te~~I~ 1174 (1236)
+++|+.... . .|+|..+= --|. ++-.--+|++.++|++... | .+|+..+||++.|.... .
T Consensus 364 V~e~l~~a~-~--------~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~---a 431 (503)
T 2yhs_A 364 IFDAIQAAK-A--------RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQ---A 431 (503)
T ss_dssp HHHHHHHHH-H--------TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHH---H
T ss_pred HHHHHHHHH-h--------cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHH---H
Confidence 999985221 1 22222221 1111 1112235788899987643 5 35555558888665422 2
Q ss_pred HHHHHHcCCCeEEEEecCchh
Q 040099 1175 DALDQVMVDRTTLVVAHRLST 1195 (1236)
Q Consensus 1175 ~~L~~~~~~~TvI~IaHRl~t 1195 (1236)
+.+++. .+.|.+++|| ++.
T Consensus 432 k~f~~~-~~itgvIlTK-LD~ 450 (503)
T 2yhs_A 432 KLFHEA-VGLTGITLTK-LDG 450 (503)
T ss_dssp HHHHHH-TCCSEEEEEC-GGG
T ss_pred HHHHhh-cCCCEEEEEc-CCC
Confidence 223322 3779999999 554
No 231
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.36 E-value=4.9e-13 Score=146.93 Aligned_cols=146 Identities=20% Similarity=0.288 Sum_probs=90.4
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHc--CCCC-----CCcEEEECCeecCC-CCHHHHhcceEEEccCCCCCchhHHHH
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQR--FYDP-----QAGEVLIDGVNLKE-FQLKWIREKIGLVSQEPVLLSSSIRDN 480 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~--~~~~-----~~G~i~~~g~~~~~-~~~~~~r~~i~~v~Q~~~l~~~ti~~n 480 (1236)
-+++|++++|+||||||||||++.+++ ..+| ..|.+++++.+... .....+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 589999999999999999999999999 5555 67888998865211 1122344456665543 4566
Q ss_pred HhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc--CCCCEEEEeCcCCCCCHH-
Q 040099 481 IAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI--KDPRILLLDEATSALDSE- 557 (1236)
Q Consensus 481 i~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~--~~p~ililDE~ts~lD~~- 557 (1236)
+.+..+. +.++..+.+ .-+++++ .+|+++++|||++.+|+.
T Consensus 93 ~~~~~~~-~~~~~~~~~-----------------------------------~~~~~~~~~~~~~lliiD~~~~~~~~~~ 136 (243)
T 1n0w_A 93 VAYARAF-NTDHQTQLL-----------------------------------YQASAMMVESRYALLIVDSATALYRTDY 136 (243)
T ss_dssp EEEEECC-SHHHHHHHH-----------------------------------HHHHHHHHHSCEEEEEEETSSGGGC---
T ss_pred eEEEecC-CHHHHHHHH-----------------------------------HHHHHHHhcCCceEEEEeCchHHHHHHh
Confidence 5543321 222222211 1111121 689999999999999986
Q ss_pred ------HH-----HHHHHHHHHHc--cCceEEEEecCchhH-------------------h-hcCeEEEEECC
Q 040099 558 ------SG-----RMVQEALDRVM--INRTTVIVSHRLSLI-------------------R-NANIIAVIQQG 597 (1236)
Q Consensus 558 ------~~-----~~i~~~l~~~~--~~~t~i~itH~~~~~-------------------~-~ad~i~vl~~G 597 (1236)
++ ..+...|.++. .+.|+|+++|..... . .||.+++|++|
T Consensus 137 ~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 137 SGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 32 23444454443 378999999965432 2 48999999865
No 232
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.36 E-value=1.7e-15 Score=174.64 Aligned_cols=177 Identities=11% Similarity=0.159 Sum_probs=117.5
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCC----HHHHhc
Q 040099 386 ELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQ----LKWIRE 461 (1236)
Q Consensus 386 ~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~----~~~~r~ 461 (1236)
+++|++++|. ...+|+++||++++|++++|+||||||||||++.|+|++.|++|+|.+.|.|+.... ....|.
T Consensus 31 e~~~~~~~~~---~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~ 107 (337)
T 2qm8_A 31 ESRRADHRAA---VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107 (337)
T ss_dssp TCSSHHHHHH---HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred eeCCcccccC---hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence 3445566663 235899999999999999999999999999999999999999999999998875432 123467
Q ss_pred ceEEEccCCCCCc----------h---hHHHHHhc----CCC-------C--CCHHHHHHHHHHh-------------cc
Q 040099 462 KIGLVSQEPVLLS----------S---SIRDNIAY----GKT-------H--ATKEEIQAAAEAA-------------NA 502 (1236)
Q Consensus 462 ~i~~v~Q~~~l~~----------~---ti~~ni~~----g~~-------~--~~~~~~~~~~~~~-------------~~ 502 (1236)
++++++|++.+|. | +++|.+.. +.+ . .++..+.+.++.. .+
T Consensus 108 ~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i 187 (337)
T 2qm8_A 108 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGI 187 (337)
T ss_dssp GSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------C
T ss_pred hheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHH
Confidence 8999999998874 2 23433310 100 0 0111111111000 00
Q ss_pred HHHHHhCCCCcc-ccccC-CCCCCChHHHHHHHHHHHhcC------CCCEEEEeCcCCCCCHHHHHHHHHHHHHH
Q 040099 503 SHFIKNLPQGLD-TNVGE-HGIQLSGGQKQRVAIARAMIK------DPRILLLDEATSALDSESGRMVQEALDRV 569 (1236)
Q Consensus 503 ~~~i~~l~~g~~-t~~g~-~g~~LSgGqkqRiaiARal~~------~p~ililDE~ts~lD~~~~~~i~~~l~~~ 569 (1236)
...+...|+-+- +.+.. ....+|+|++|++..|++++. +|+++. |||+|......+.+.|.++
T Consensus 188 ~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 188 KKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp CTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 000111121000 11111 123579999999999999998 688886 9999999999999988765
No 233
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.34 E-value=1.3e-16 Score=168.72 Aligned_cols=166 Identities=14% Similarity=0.073 Sum_probs=107.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCC-chhHHHHHhcCCCCCCHH
Q 040099 413 GTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLL-SSSIRDNIAYGKTHATKE 491 (1236)
Q Consensus 413 g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~ni~~g~~~~~~~ 491 (1236)
|++++|+|||||||||+++.|++ |.+|++.++|.++... ..+++++|....+ ..++++|+.+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~------ 66 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDLT------ 66 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHHH------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHHH------
Confidence 68999999999999999999997 6789999998665321 2467788765433 347888875410
Q ss_pred HHHHHHHHhccHHHHHhCCCCcccccc----CCCCCC--ChHHHHHHHHHH------HhcCCCCEEEEeCcCCCCCHHHH
Q 040099 492 EIQAAAEAANASHFIKNLPQGLDTNVG----EHGIQL--SGGQKQRVAIAR------AMIKDPRILLLDEATSALDSESG 559 (1236)
Q Consensus 492 ~~~~~~~~~~~~~~i~~l~~g~~t~~g----~~g~~L--SgGqkqRiaiAR------al~~~p~ililDE~ts~lD~~~~ 559 (1236)
..... .+.. .+ ++...+ +.-..+ |+|++|++.++. +++++|+...+|+ ++|+...
T Consensus 67 --~~~~~-~~~~-~i------ld~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~ 133 (189)
T 2bdt_A 67 --VNFLL-AQND-VV------LDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCL 133 (189)
T ss_dssp --HHHHH-TTCE-EE------EESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGG
T ss_pred --HHHHh-cCCc-EE------EeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHH
Confidence 00000 0000 00 010000 000124 888888888888 8888888888884 7999877
Q ss_pred HHHHHHHHHHcc-CceEEEEecC-chhHhh-cCeEEEEECCEEEEEeCccccc
Q 040099 560 RMVQEALDRVMI-NRTTVIVSHR-LSLIRN-ANIIAVIQQGKIVEKGTHSELL 609 (1236)
Q Consensus 560 ~~i~~~l~~~~~-~~t~i~itH~-~~~~~~-ad~i~vl~~G~i~~~g~~~~l~ 609 (1236)
.. .+.+..+.. +.|+|..+|. ++.++. ||+|+ ++|+++.+|+.+-|-
T Consensus 134 ~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 134 EL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp HH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred HH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 77 777776643 5789999999 998876 99998 999999999887664
No 234
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.33 E-value=6.9e-13 Score=152.19 Aligned_cols=123 Identities=20% Similarity=0.194 Sum_probs=84.7
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCcEEEEC-CeecCCCCHHHHhcceEEEccCCCCCch-hH
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD-PQAGEVLID-GVNLKEFQLKWIREKIGLVSQEPVLLSS-SI 477 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-~~~G~i~~~-g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti 477 (1236)
.-++++++. .+|++++|+||||||||||+|+|+|... |..|+|.++ |.+.. ...+..+++++|++++++. ++
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv 278 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGV 278 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHH
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccH
Confidence 357788875 4899999999999999999999999999 999999987 75542 2345679999999988865 99
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 040099 478 RDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI 539 (1236)
Q Consensus 478 ~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~ 539 (1236)
+++ +....+.+++.+ ...+++..+ |+....+....+|| ||+||++||++++
T Consensus 279 ~e~---~l~~l~~~e~~~-----~~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 279 REF---GLWHLEPEQITQ-----GFVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp HTC---CCCCCCHHHHHH-----TSGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred HHh---hhcCCCHHHHHH-----HHHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 985 333344444432 223344333 55555666677899 9999999999863
No 235
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.31 E-value=1.2e-12 Score=149.45 Aligned_cols=175 Identities=15% Similarity=0.098 Sum_probs=113.2
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCCh----HHHhcc--eEEEcCCCCCCh-hhHHHHH
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQV----KWLRQQ--MGVVSQEPVLFS-DTIRANI 1107 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~----~~lR~~--i~~V~Qdp~LF~-gTIreNL 1107 (1236)
..++|+.++|||||||||||+++.|.|++.|++|+|.++|.|+..... ..++++ +.+++|++.+++ .|+++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 457899999999999999999999999999999999999999976553 234444 449999998875 4899998
Q ss_pred HHHhh-hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeE
Q 040099 1108 AEMAN-ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTT 1186 (1236)
Q Consensus 1108 ~~~a~-~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~Tv 1186 (1236)
..... -.+.+ -+||. |-.. .-..=-++.-.++|++..++++++||.+|. .|.... + +.+.+ ..+.|.
T Consensus 205 ~~~~~~~~d~v-----liDta-G~~~-~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~~--~-~~~~~-~~~it~ 272 (328)
T 3e70_C 205 QHAKARGIDVV-----LIDTA-GRSE-TNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVEQ--A-RQFNE-AVKIDG 272 (328)
T ss_dssp HHHHHHTCSEE-----EEEEC-CSCC-TTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHHH--H-HHHHH-HSCCCE
T ss_pred HHHHhccchhh-----HHhhc-cchh-HHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHHH--H-HHHHH-hcCCCE
Confidence 52211 11111 02221 1100 011122344569999999999999996665 333221 1 22222 137899
Q ss_pred EEEecCchh---------h-hhcCEEEEEeCCEEE---EecChhHHhh
Q 040099 1187 LVVAHRLST---------I-KNAHLIAVVSQGMIV---EKGSHESLIS 1221 (1236)
Q Consensus 1187 I~IaHRl~t---------i-~~aD~I~Vl~~G~Iv---e~Gt~~eLl~ 1221 (1236)
|++||--.+ + ...-.|..+..|+-+ +.-+|+.+.+
T Consensus 273 iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v~dl~~~~~~~~~~ 320 (328)
T 3e70_C 273 IILTKLDADARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLE 320 (328)
T ss_dssp EEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSSTTCEEECCHHHHHH
T ss_pred EEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCccccccCCHHHHHH
Confidence 999994332 1 123468888888754 3344555443
No 236
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.30 E-value=5.1e-15 Score=174.35 Aligned_cols=129 Identities=16% Similarity=0.143 Sum_probs=91.1
Q ss_pred cccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCC----CHHHHhcceEEEc---------c
Q 040099 402 ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEF----QLKWIREKIGLVS---------Q 468 (1236)
Q Consensus 402 ~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~----~~~~~r~~i~~v~---------Q 468 (1236)
+|+++ + .++|++++|+|||||||||++++|+|+++|++|+|.++|.++... +...+++++++.+ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 56666 4 379999999999999999999999999999999999998877421 1223445566655 9
Q ss_pred CCCCC--c-----hhHHHHHhcCCC---------CCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 040099 469 EPVLL--S-----SSIRDNIAYGKT---------HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRV 532 (1236)
Q Consensus 469 ~~~l~--~-----~ti~~ni~~g~~---------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRi 532 (1236)
+|.++ . .|+.+|+.++.. ..+..+..+.+...++.++. ...+|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-------------~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-------------ISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-------------HHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-------------HHHHHHHHHHHH-
Confidence 98653 2 489999876321 11122333334444443321 224799999999
Q ss_pred HHHHHhcCCCCEEEE
Q 040099 533 AIARAMIKDPRILLL 547 (1236)
Q Consensus 533 aiARal~~~p~ilil 547 (1236)
|||+++.+|++..-
T Consensus 302 -LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 -LVRTLCPDCKEPYE 315 (418)
T ss_dssp -EEEEECTTTCEEEE
T ss_pred -hhhhhcCCCCccCC
Confidence 99999999998763
No 237
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.30 E-value=6.7e-14 Score=154.54 Aligned_cols=147 Identities=19% Similarity=0.187 Sum_probs=98.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHH---cCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCc-hhHHHHHhcC---
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQ---RFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLS-SSIRDNIAYG--- 484 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~---~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~ni~~g--- 484 (1236)
++++++|+|||||||||++++|+ |+..|+.|+|.++|.+.. ..+...+++++|++.+++ .++.+|+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999988775432 124455677788877665 4889988641
Q ss_pred ----------CCCCCHHHHHHHHHHhccH--HHHHhCCC--CccccccCCCCCCChHHHHHHHHHHHh-cCCCCEEEEe-
Q 040099 485 ----------KTHATKEEIQAAAEAANAS--HFIKNLPQ--GLDTNVGEHGIQLSGGQKQRVAIARAM-IKDPRILLLD- 548 (1236)
Q Consensus 485 ----------~~~~~~~~~~~~~~~~~~~--~~i~~l~~--g~~t~~g~~g~~LSgGqkqRiaiARal-~~~p~ililD- 548 (1236)
.+. +.++.....+..... -++ ..|. .++.....+...||| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~~-~~~~~~~l~~~~~~~~vi~L-~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~ 172 (246)
T 2bbw_A 102 RRGQHWLLDGFPR-TLGQAEALDKICEVDLVISL-NIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDD 172 (246)
T ss_dssp CTTSCEEEESCCC-SHHHHHHHHTTCCCCEEEEE-ECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCT
T ss_pred cCCCeEEEECCCC-CHHHHHHHHhhcCCCEEEEE-ECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccc
Confidence 111 222221111100000 000 0000 011112334457999 66 888 9999999999
Q ss_pred ---CcCCCCCHHHHHHHHHHHHHHcc
Q 040099 549 ---EATSALDSESGRMVQEALDRVMI 571 (1236)
Q Consensus 549 ---E~ts~lD~~~~~~i~~~l~~~~~ 571 (1236)
|||++||..++..+.+.++++.+
T Consensus 173 ~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 173 VTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp TTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred ccccccccCCCCcHHHHHHHHHHHHH
Confidence 99999999999999998887643
No 238
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.28 E-value=2.4e-12 Score=147.00 Aligned_cols=163 Identities=15% Similarity=0.101 Sum_probs=106.3
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHH----HHhcc--eEEEccCCCCCch-hHHHHH
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLK----WIREK--IGLVSQEPVLLSS-SIRDNI 481 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~----~~r~~--i~~v~Q~~~l~~~-ti~~ni 481 (1236)
..++|++++|+|||||||||+++.|+|++.|++|+|.++|.|+...... .++++ +.+++|+..+++. +++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3478999999999999999999999999999999999999998765532 23444 5599999888764 999999
Q ss_pred hcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHH
Q 040099 482 AYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRM 561 (1236)
Q Consensus 482 ~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~ 561 (1236)
.++.. .+. +.+ =+||. |... .-..=.++.-.++|++..++++++||.+|. .|..
T Consensus 205 ~~~~~-------------~~~-d~v-----liDta-G~~~-~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~---- 258 (328)
T 3e70_C 205 QHAKA-------------RGI-DVV-----LIDTA-GRSE-TNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIV---- 258 (328)
T ss_dssp HHHHH-------------HTC-SEE-----EEEEC-CSCC-TTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHH----
T ss_pred HHHHh-------------ccc-hhh-----HHhhc-cchh-HHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHH----
Confidence 76421 000 000 01111 1100 001112334459999999999999996665 3332
Q ss_pred HHHHHHHHc--cCceEEEEecCchh---------Hh-hcCeEEEEECCEE
Q 040099 562 VQEALDRVM--INRTTVIVSHRLSL---------IR-NANIIAVIQQGKI 599 (1236)
Q Consensus 562 i~~~l~~~~--~~~t~i~itH~~~~---------~~-~ad~i~vl~~G~i 599 (1236)
+.++.+. .+.|.|++||--.+ +. ..-.|..+..|+-
T Consensus 259 --~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~ 306 (328)
T 3e70_C 259 --EQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQG 306 (328)
T ss_dssp --HHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSS
T ss_pred --HHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCC
Confidence 2233332 37899999994322 11 2345777776653
No 239
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.28 E-value=1.5e-13 Score=140.14 Aligned_cols=88 Identities=17% Similarity=0.080 Sum_probs=72.3
Q ss_pred EeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEc
Q 040099 388 KDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVS 467 (1236)
Q Consensus 388 ~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 467 (1236)
+|++++|+ +..+++++||++++|++++|+||||||||||+++|+|++ |++|+|.++|.++.+.. ..+ .+++
T Consensus 11 ~~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~--~~~---~~~~ 81 (158)
T 1htw_A 11 EFSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEY--NIA---GKMI 81 (158)
T ss_dssp HHHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEE--EET---TEEE
T ss_pred HHHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeec--cCC---Ccce
Confidence 45566774 246899999999999999999999999999999999999 99999999998874211 111 2899
Q ss_pred cCCCCCchhHHHHHh-cC
Q 040099 468 QEPVLLSSSIRDNIA-YG 484 (1236)
Q Consensus 468 Q~~~l~~~ti~~ni~-~g 484 (1236)
|++.+|.-|+.||+. +|
T Consensus 82 q~~~l~~ltv~e~l~~~g 99 (158)
T 1htw_A 82 YHFDLYRLADPEELEFMG 99 (158)
T ss_dssp EEEECTTCSCTTHHHHST
T ss_pred eccccccCCcHHHHHHcC
Confidence 999888779999985 45
No 240
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.28 E-value=3.1e-12 Score=140.46 Aligned_cols=145 Identities=15% Similarity=0.215 Sum_probs=90.0
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhc--ccCC-----CCcEEEECCeecc-cCChHHHhcceEEEcCCCCCChhhHHHH
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQR--FYDP-----SSGHITLDGVEIQ-KLQVKWLRQQMGVVSQEPVLFSDTIRAN 1106 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r--~~~~-----~~G~I~idG~di~-~i~~~~lR~~i~~V~Qdp~LF~gTIreN 1106 (1236)
.|++|+.++|+||+|||||||++.|.+ ..+| ..|.+++++.+.- .-....+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 589999999999999999999999999 4554 5788999987631 11233445556665543 2233
Q ss_pred HHHHhhhchHHHhhhhchhhhhcCCCCCCChhHH-HHHHHHHHHc--cCCCEEEEecCCCCCCHH-------HHH-----
Q 040099 1107 IAEMANANGFISGLQEGYDTLVGERGVQLSGGQK-QRVAIARAIV--KEPKILLLDEATSALDIE-------SER----- 1171 (1236)
Q Consensus 1107 L~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQr-QRlaLARALl--r~p~ILlLDEaTSaLD~~-------te~----- 1171 (1236)
+. +. ...++.+. +.+.-+++++ .+|++|++||+|+.+|++ +++
T Consensus 93 ~~-----------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~ 150 (243)
T 1n0w_A 93 VA-----------YA-----------RAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLA 150 (243)
T ss_dssp EE-----------EE-----------ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHH
T ss_pred eE-----------EE-----------ecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHH
Confidence 20 00 01233332 2333344444 589999999999999986 432
Q ss_pred HHHHHHHHHc--CCCeEEEEecCchhhh--------------------hcCEEEEEeCC
Q 040099 1172 VVQDALDQVM--VDRTTLVVAHRLSTIK--------------------NAHLIAVVSQG 1208 (1236)
Q Consensus 1172 ~I~~~L~~~~--~~~TvI~IaHRl~ti~--------------------~aD~I~Vl~~G 1208 (1236)
.+.+.|++.. .++|+|+++|-..... .||.+++|+.|
T Consensus 151 ~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 151 RFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 2333344332 3799999999655432 48999999865
No 241
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.27 E-value=6.6e-12 Score=147.07 Aligned_cols=74 Identities=31% Similarity=0.427 Sum_probs=67.7
Q ss_pred CCCChHHHHHH------HHHHHhcCC-CCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEE
Q 040099 522 IQLSGGQKQRV------AIARAMIKD-PRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVI 594 (1236)
Q Consensus 522 ~~LSgGqkqRi------aiARal~~~-p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl 594 (1236)
..||||||||+ ++|||+..+ |++|||||||++||+.+...+.+.|.++.+++++|+|||+++....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 57999999988 678999999 99999999999999999999999999876667999999999865669999999
Q ss_pred E
Q 040099 595 Q 595 (1236)
Q Consensus 595 ~ 595 (1236)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
No 242
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.26 E-value=3.9e-12 Score=149.02 Aligned_cols=147 Identities=18% Similarity=0.268 Sum_probs=96.2
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHH--HHcCCCCCCc-----EEEECCeec-CCCCHHHHhcceEEEccCCCCCchhHHHH
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISL--IQRFYDPQAG-----EVLIDGVNL-KEFQLKWIREKIGLVSQEPVLLSSSIRDN 480 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~l--l~~~~~~~~G-----~i~~~g~~~-~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n 480 (1236)
-|++|++++|+||||||||||++. +.+..+|+.| .+++++.+. .......+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 689999999999999999999994 4566666444 888988763 12223334456666554 67788
Q ss_pred HhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh--cCCCCEEEEeCcCCCCCHHH
Q 040099 481 IAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAM--IKDPRILLLDEATSALDSES 558 (1236)
Q Consensus 481 i~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal--~~~p~ililDE~ts~lD~~~ 558 (1236)
+.+..+. +.++..+ .+.-++.+ -.+|+++++||||+.+|++.
T Consensus 247 i~~~~~~-~~~~~~~-----------------------------------~l~~~~~~l~~~~~~llVIDs~t~~~~~~~ 290 (400)
T 3lda_A 247 VAYARAY-NADHQLR-----------------------------------LLDAAAQMMSESRFSLIVVDSVMALYRTDF 290 (400)
T ss_dssp EEEEECC-SHHHHHH-----------------------------------HHHHHHHHHHHSCEEEEEEETGGGGCC---
T ss_pred EEEeccC-ChHHHHH-----------------------------------HHHHHHHHHHhcCCceEEecchhhhCchhh
Confidence 7775442 2222211 11111111 24799999999999999754
Q ss_pred H------------HHHHHHHHHHc--cCceEEEEecCc-------------------hhHhh-cCeEEEEECCE
Q 040099 559 G------------RMVQEALDRVM--INRTTVIVSHRL-------------------SLIRN-ANIIAVIQQGK 598 (1236)
Q Consensus 559 ~------------~~i~~~l~~~~--~~~t~i~itH~~-------------------~~~~~-ad~i~vl~~G~ 598 (1236)
. ..+.+.|+++. .+.|+|+|+|.. ..+.+ +|.+++|++|+
T Consensus 291 sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 291 SGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 3 45666676664 378999999982 22344 89999998763
No 243
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.26 E-value=2.3e-13 Score=138.75 Aligned_cols=86 Identities=12% Similarity=0.018 Sum_probs=71.6
Q ss_pred eEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEc
Q 040099 1014 LRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVS 1093 (1236)
Q Consensus 1014 ~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~ 1093 (1236)
++++++|.. ..+++++||+|++|++++|+||||||||||+++|.|++ |++|+|.++|.++.+.. ..+ + +++
T Consensus 11 ~~~~~~~g~---~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~--~~~-~--~~~ 81 (158)
T 1htw_A 11 EFSMLRFGK---KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEY--NIA-G--KMI 81 (158)
T ss_dssp HHHHHHHHH---HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEE--EET-T--EEE
T ss_pred HHHHHHHHH---HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeec--cCC-C--cce
Confidence 355666742 35899999999999999999999999999999999999 99999999999885321 112 2 799
Q ss_pred CCCCCChhhHHHHHH
Q 040099 1094 QEPVLFSDTIRANIA 1108 (1236)
Q Consensus 1094 Qdp~LF~gTIreNL~ 1108 (1236)
|++.+|.-|+.||+.
T Consensus 82 q~~~l~~ltv~e~l~ 96 (158)
T 1htw_A 82 YHFDLYRLADPEELE 96 (158)
T ss_dssp EEEECTTCSCTTHHH
T ss_pred eccccccCCcHHHHH
Confidence 999999779999984
No 244
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.25 E-value=1.5e-14 Score=170.32 Aligned_cols=137 Identities=20% Similarity=0.278 Sum_probs=94.0
Q ss_pred EEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeeccc----CChHHHhc
Q 040099 1012 QFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQK----LQVKWLRQ 1087 (1236)
Q Consensus 1012 ~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~----i~~~~lR~ 1087 (1236)
+++++++.|. ...+|+++ + .++|+.++|+|||||||||++++|+++++|.+|+|.++|.++.. ++...+++
T Consensus 145 ~l~~Lg~~~~---~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~ 219 (418)
T 1p9r_A 145 DLHSLGMTAH---NHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNP 219 (418)
T ss_dssp CGGGSCCCHH---HHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBG
T ss_pred CHHHcCCCHH---HHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEcc
Confidence 4445555443 12367777 5 38999999999999999999999999999999999999987742 11223455
Q ss_pred ceEEEc---------CCCCCC--h-----hhHHHHHHHHh-h-----------hchHHHhhhh-chhhhhcCCCCCCChh
Q 040099 1088 QMGVVS---------QEPVLF--S-----DTIRANIAEMA-N-----------ANGFISGLQE-GYDTLVGERGVQLSGG 1138 (1236)
Q Consensus 1088 ~i~~V~---------Qdp~LF--~-----gTIreNL~~~a-~-----------~~~~i~~lp~-Gldt~vge~G~~LSGG 1138 (1236)
++++.+ |+|.++ . .|+++|+.-.. + ..+.+..|.+ |++... ...+||||
T Consensus 220 ~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~--~~~~LSgg 297 (418)
T 1p9r_A 220 RVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL--ISSSLLGV 297 (418)
T ss_dssp GGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH--HHHHEEEE
T ss_pred ccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH--HHHHHHHH
Confidence 666644 999753 2 48888885211 0 1122333322 222211 23479999
Q ss_pred HHHHHHHHHHHccCCCEEE
Q 040099 1139 QKQRVAIARAIVKEPKILL 1157 (1236)
Q Consensus 1139 QrQRlaLARALlr~p~ILl 1157 (1236)
|+|| |||+++.+|++..
T Consensus 298 ~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 298 LAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEE--EEEEECTTTCEEE
T ss_pred HHHH--hhhhhcCCCCccC
Confidence 9999 9999999999875
No 245
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.25 E-value=7e-12 Score=146.04 Aligned_cols=137 Identities=18% Similarity=0.247 Sum_probs=78.6
Q ss_pred CEEEEEcCCCCChHHHHHHHhc-ccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCC-hhhHHHHHHHHhhhchHH
Q 040099 1040 KTIALVGESGSGKSTVISLLQR-FYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLF-SDTIRANIAEMANANGFI 1117 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r-~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF-~gTIreNL~~~a~~~~~i 1117 (1236)
..+.|+||+|+||||+++.|.+ ++.|..|.|.++|.++..... -+..+++++|++++. +.+-. .........+.+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i 113 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITPSDM-GNNDRIVIQELL 113 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-----CCHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecHhhc-CCcchHHHHHHH
Confidence 3499999999999999999999 899999999999988764332 277899999988653 11100 000000011111
Q ss_pred Hhhh--hchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchh
Q 040099 1118 SGLQ--EGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLST 1195 (1236)
Q Consensus 1118 ~~lp--~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~t 1195 (1236)
..+- .+++..+ .||| +..+|+|+|||||++ ||.++...+.+.+.+...++++|++||+++.
T Consensus 114 ~~~~~~~~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 114 KEVAQMEQVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 176 (354)
T ss_dssp HHHTTTTC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred HHHHHhccccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHH
Confidence 1110 0111111 4566 788999999999999 9999999999999987778899999999764
Q ss_pred h
Q 040099 1196 I 1196 (1236)
Q Consensus 1196 i 1196 (1236)
+
T Consensus 177 l 177 (354)
T 1sxj_E 177 I 177 (354)
T ss_dssp S
T ss_pred H
Confidence 3
No 246
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.24 E-value=3.3e-14 Score=171.98 Aligned_cols=173 Identities=17% Similarity=0.191 Sum_probs=116.7
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCc-hhHHH
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLS-SSIRD 479 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~ 479 (1236)
.+++++++.+++|+.++|+|||||||||++++|+|+++|++|.|.++|.+--..+. +..++++.|...... .|.++
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeecccccCCcCHHH
Confidence 47899999999999999999999999999999999999999999998865222221 345788888765221 27777
Q ss_pred HHhcC---CC------CCCHHHHHHHHHHhc-------------cHHHHHhC---CCCcccccc-------CCCCCCChH
Q 040099 480 NIAYG---KT------HATKEEIQAAAEAAN-------------ASHFIKNL---PQGLDTNVG-------EHGIQLSGG 527 (1236)
Q Consensus 480 ni~~g---~~------~~~~~~~~~~~~~~~-------------~~~~i~~l---~~g~~t~~g-------~~g~~LSgG 527 (1236)
++... +| ....+|...+.+.+. +.+.+.++ |.|....+. .....+|||
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G 404 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN 404 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence 76543 22 233344444444332 12223322 223322211 223458999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc-CceEEE--EecCchhHhh-c
Q 040099 528 QKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI-NRTTVI--VSHRLSLIRN-A 588 (1236)
Q Consensus 528 qkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~--itH~~~~~~~-a 588 (1236)
||||.++|. + | |++||+.+.+.+.+.+.++.+ ++|+++ +||+++.+.. |
T Consensus 405 ~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~ 457 (511)
T 2oap_1 405 TRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFL 457 (511)
T ss_dssp CEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHH
T ss_pred CceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHc
Confidence 999987751 1 6 999999887766666666543 678875 8999998764 5
No 247
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.23 E-value=1.4e-11 Score=144.16 Aligned_cols=74 Identities=27% Similarity=0.358 Sum_probs=67.3
Q ss_pred CCCChhHHHHH------HHHHHHccC-CCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEE
Q 040099 1133 VQLSGGQKQRV------AIARAIVKE-PKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVV 1205 (1236)
Q Consensus 1133 ~~LSGGQrQRl------aLARALlr~-p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl 1205 (1236)
..|||||+||+ |+|||+..+ |++|||||||++||+.+...+.+.|++...++|||+|||+++....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 46999999987 678999999 99999999999999999999999999865567999999999865679999999
Q ss_pred e
Q 040099 1206 S 1206 (1236)
Q Consensus 1206 ~ 1206 (1236)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
No 248
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.23 E-value=5.4e-12 Score=146.99 Aligned_cols=138 Identities=19% Similarity=0.236 Sum_probs=79.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc-CCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCC-chhHHHHHhcCCCCCCHHH
Q 040099 415 IAALVGTSGSGKSTVISLIQR-FYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLL-SSSIRDNIAYGKTHATKEE 492 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~-~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~ni~~g~~~~~~~~ 492 (1236)
.+.|+||+|+||||+++.++| ++.|+.|.+.++|.+...... .+..+++++|++++. +.+- .+. .....
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~ 108 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITPSD-----MGN--NDRIV 108 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-----------CCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecHhh-----cCC--cchHH
Confidence 499999999999999999999 899999999999987654322 266799999988652 1110 011 11112
Q ss_pred HHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccC
Q 040099 493 IQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMIN 572 (1236)
Q Consensus 493 ~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~ 572 (1236)
+.+..+.+ .... +++..+ .||| +..+|+++|+|||++ ||+.+...+.+.+++...+
T Consensus 109 ~~~~i~~~-----~~~~--~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 109 IQELLKEV-----AQME--QVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp HHHHHHHH-----TTTT--C----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHHH-----HHhc--cccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCC
Confidence 33322221 1111 122111 5676 788999999999999 9999999999999987777
Q ss_pred ceEEEEecCchhH
Q 040099 573 RTTVIVSHRLSLI 585 (1236)
Q Consensus 573 ~t~i~itH~~~~~ 585 (1236)
.++|++||+++.+
T Consensus 165 ~~~Il~t~~~~~l 177 (354)
T 1sxj_E 165 IRLIMVCDSMSPI 177 (354)
T ss_dssp EEEEEEESCSCSS
T ss_pred CEEEEEeCCHHHH
Confidence 8999999997643
No 249
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.22 E-value=2.9e-13 Score=149.43 Aligned_cols=133 Identities=21% Similarity=0.240 Sum_probs=95.8
Q ss_pred CCCEEEEEcCCCCChHHHHHHHh---cccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCCh-hhHHHHHHHHhh-
Q 040099 1038 PGKTIALVGESGSGKSTVISLLQ---RFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFS-DTIRANIAEMAN- 1112 (1236)
Q Consensus 1038 ~Ge~vaIVG~SGSGKSTL~~lL~---r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNL~~~a~- 1112 (1236)
++++++|+|++||||||++++|. |+..|+.|+|.++|.+.. ..++..+..++|++.++. .|+.+|+.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999999886532 234556667788776554 589999864211
Q ss_pred -------hchH------HHhhh--hc--------------hhhhhcCCCCCCChhHHHHHHHHHHH-ccCCCEEEEe---
Q 040099 1113 -------ANGF------ISGLQ--EG--------------YDTLVGERGVQLSGGQKQRVAIARAI-VKEPKILLLD--- 1159 (1236)
Q Consensus 1113 -------~~~~------i~~lp--~G--------------ldt~vge~G~~LSGGQrQRlaLARAL-lr~p~ILlLD--- 1159 (1236)
+.++ ...+. .+ ++-........||| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~ 174 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVT 174 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTT
T ss_pred cCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccc
Confidence 1110 11110 01 11111233446888 55 788 9999999999
Q ss_pred -cCCCCCCHHHHHHHHHHHHHHc
Q 040099 1160 -EATSALDIESERVVQDALDQVM 1181 (1236)
Q Consensus 1160 -EaTSaLD~~te~~I~~~L~~~~ 1181 (1236)
|||+++|..++..+.+.++++.
T Consensus 175 ~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 175 GEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp CCBCBCCGGGSHHHHHHHHHHHH
T ss_pred ccccccCCCCcHHHHHHHHHHHH
Confidence 9999999999999999998764
No 250
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.19 E-value=5.9e-14 Score=169.75 Aligned_cols=158 Identities=15% Similarity=0.182 Sum_probs=106.6
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChh--hHH
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSD--TIR 1104 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~g--TIr 1104 (1236)
.+++++++.+++|+.++|+|||||||||++++|+|+++|++|.|+|+|.+--..+. +..+++++|++. ..+ |.+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~~ 323 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCHH
Confidence 47899999999999999999999999999999999999999999999865222221 345667776654 221 444
Q ss_pred HHHH------------------------HHhh-------------hchHHHhhh---hchhhhhc-------CCCCCCCh
Q 040099 1105 ANIA------------------------EMAN-------------ANGFISGLQ---EGYDTLVG-------ERGVQLSG 1137 (1236)
Q Consensus 1105 eNL~------------------------~~a~-------------~~~~i~~lp---~Gldt~vg-------e~G~~LSG 1137 (1236)
+++. +.++ +.+.+..+. .|+...+. .....+|+
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 4442 1111 011122111 11111111 12235799
Q ss_pred hHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC-CCeEEE--EecCchhhhh-cC
Q 040099 1138 GQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMV-DRTTLV--VAHRLSTIKN-AH 1200 (1236)
Q Consensus 1138 GQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~-~~TvI~--IaHRl~ti~~-aD 1200 (1236)
|||||.|+|. + | |++||+++.+.+.+.|.++.+ ++|+++ +||+++.+.. |+
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 9999988751 1 7 999999988777776665543 678875 8999998864 54
No 251
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.19 E-value=1.5e-11 Score=124.37 Aligned_cols=91 Identities=19% Similarity=0.245 Sum_probs=69.6
Q ss_pred cccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCc--EEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHH
Q 040099 402 ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG--EVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRD 479 (1236)
Q Consensus 402 ~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G--~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 479 (1236)
+|+++ +|+.++|+||+|||||||++++.+.+.+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 56666 8999999999999999999999999987 57 555554332110
Q ss_pred HHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHH
Q 040099 480 NIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESG 559 (1236)
Q Consensus 480 ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~ 559 (1236)
+++.+|++|+||||++ +|...+
T Consensus 79 ---------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~ 100 (149)
T 2kjq_A 79 ---------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQ 100 (149)
T ss_dssp ---------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHH
T ss_pred ---------------------------------------------------------HHHhCCCEEEEeCccc-cChHHH
Confidence 2457899999999998 665557
Q ss_pred HHHHHHHHHHc-cCce-EEEEecC
Q 040099 560 RMVQEALDRVM-INRT-TVIVSHR 581 (1236)
Q Consensus 560 ~~i~~~l~~~~-~~~t-~i~itH~ 581 (1236)
+.+.+.++++. ++++ +|++||+
T Consensus 101 ~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 101 ALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHHcCCcEEEEECCC
Confidence 88888887764 4677 7777775
No 252
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.19 E-value=2.1e-12 Score=148.18 Aligned_cols=114 Identities=15% Similarity=0.119 Sum_probs=75.0
Q ss_pred cccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccC-CCCcEEEEC-CeecccCChHHHhcceEEEcCCCCCChh-hHH
Q 040099 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD-PSSGHITLD-GVEIQKLQVKWLRQQMGVVSQEPVLFSD-TIR 1104 (1236)
Q Consensus 1028 vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~-~~~G~I~id-G~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIr 1104 (1236)
-++++++. .+|++++|+||||||||||+++|.|... |..|+|.++ |.+.. ...+++++++||++.+++. |++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 46777775 4899999999999999999999999999 999999997 76653 2356789999999988764 887
Q ss_pred HHHH------H-HhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHH
Q 040099 1105 ANIA------E-MANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAI 1149 (1236)
Q Consensus 1105 eNL~------~-~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARAL 1149 (1236)
++-. + .....++...+ |+....+....++| ||+||++||+++
T Consensus 280 e~~l~~l~~~e~~~~~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 280 EFGLWHLEPEQITQGFVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp TCCCCCCCHHHHHHTSGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred HhhhcCCCHHHHHHHHHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 7521 0 01112222211 22222334456899 999999999976
No 253
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.18 E-value=1.8e-11 Score=123.80 Aligned_cols=92 Identities=20% Similarity=0.253 Sum_probs=71.6
Q ss_pred cccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCc--EEEECCeecccCChHHHhcceEEEcCCCCCChhhHHH
Q 040099 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG--HITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRA 1105 (1236)
Q Consensus 1028 vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G--~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIre 1105 (1236)
+|+++ +|+.++|+||+|||||||++++.+.+.+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 56776 9999999999999999999999999987 57 666666543221
Q ss_pred HHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCC
Q 040099 1106 NIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM-VDR 1184 (1236)
Q Consensus 1106 NL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~ 1184 (1236)
+++.+|++|+||||++ +|...++.+.+.++... +++
T Consensus 79 ------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~ 115 (149)
T 2kjq_A 79 ------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGK 115 (149)
T ss_dssp ------------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTC
T ss_pred ------------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCC
Confidence 2467899999999998 66655888888887654 357
Q ss_pred e-EEEEecCc
Q 040099 1185 T-TLVVAHRL 1193 (1236)
Q Consensus 1185 T-vI~IaHRl 1193 (1236)
| +|+++|+.
T Consensus 116 ~~iiits~~~ 125 (149)
T 2kjq_A 116 GFLLLGSEYT 125 (149)
T ss_dssp CEEEEEESSC
T ss_pred cEEEEECCCC
Confidence 7 77777753
No 254
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.16 E-value=4.9e-13 Score=152.49 Aligned_cols=141 Identities=18% Similarity=0.179 Sum_probs=100.1
Q ss_pred ccccEEEeEEEEECCCCCCcccccceeEEe-------------------cCCCEEEEEcCCCCChHHHHHHHhcccC--C
Q 040099 1007 VMGEVQFLRVSFKYPTRPHIEVFRDLCLTI-------------------PPGKTIALVGESGSGKSTVISLLQRFYD--P 1065 (1236)
Q Consensus 1007 ~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I-------------------~~Ge~vaIVG~SGSGKSTL~~lL~r~~~--~ 1065 (1236)
..+.|+++||++.|. ++++++|+.+ ++|+++||+|+||||||||+++|.+++. |
T Consensus 34 ~~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~ 108 (308)
T 1sq5_A 34 INEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWP 108 (308)
T ss_dssp HCTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTST
T ss_pred CccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCC
Confidence 346799999999993 4899999998 9999999999999999999999999998 9
Q ss_pred CCcEEEE---CCeecccCChHHHhcceEEEcCCCCCCh-hhHHHHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHH
Q 040099 1066 SSGHITL---DGVEIQKLQVKWLRQQMGVVSQEPVLFS-DTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQ 1141 (1236)
Q Consensus 1066 ~~G~I~i---dG~di~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQ 1141 (1236)
++|+|.+ ||.+.. ...++.++++ |+..++. -|+.+|+.....+ ..|-+ .+...-.+.+.+ +
T Consensus 109 ~~G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l-------~~~~~-~i~~P~~~~~~~--~ 173 (308)
T 1sq5_A 109 EHRRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKFVSDL-------KSGVP-NVTAPVYSHLIY--D 173 (308)
T ss_dssp TCCCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHH-------TTTCS-CEEECCEETTTT--E
T ss_pred CCCeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHHHHHH-------hCCCC-ceeccccccccc--C
Confidence 9999999 987752 2456778999 7765543 4889987533222 11111 011111112222 3
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCH
Q 040099 1142 RVAIARAIVKEPKILLLDEATSALDI 1167 (1236)
Q Consensus 1142 RlaLARALlr~p~ILlLDEaTSaLD~ 1167 (1236)
|+..+.+.+.+|+++|+|.|..-.|.
T Consensus 174 ~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 174 VIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp ECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred cccccceecCCCCEEEECchhhCCCc
Confidence 33333355678999999999887763
No 255
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.16 E-value=8.3e-14 Score=155.98 Aligned_cols=143 Identities=15% Similarity=0.181 Sum_probs=102.7
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCC-CCCc-hhHH
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEP-VLLS-SSIR 478 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~-~l~~-~ti~ 478 (1236)
.+++++++++++| ++|+||||||||||+++|+|.+.+ |.|.++|.++.+......++++++++|++ ..++ -++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4899999999999 999999999999999999999877 79999999887655555677899999985 3333 3667
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCC------
Q 040099 479 DNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATS------ 552 (1236)
Q Consensus 479 ~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts------ 552 (1236)
|||....+.....+.. .......++ ...|||||+||..|++|+..+|++| |||+.
T Consensus 110 Deid~~~~~r~~~~~~------~~~~~~~~~-----------l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd 170 (274)
T 2x8a_A 110 DEVDALCPRRSDRETG------ASVRVVNQL-----------LTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLD 170 (274)
T ss_dssp ETCTTTCC---------------CTTHHHHH-----------HHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSC
T ss_pred ehhhhhhcccCCCcch------HHHHHHHHH-----------HHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCC
Confidence 7776543221111100 011112222 2369999999999999999999975 99974
Q ss_pred ------CCCHHHHHHHHHHH
Q 040099 553 ------ALDSESGRMVQEAL 566 (1236)
Q Consensus 553 ------~lD~~~~~~i~~~l 566 (1236)
.-|.+.+..|++.+
T Consensus 171 ~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 171 KTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp EEEECCSCCHHHHHHHHHHH
T ss_pred eEEEeCCcCHHHHHHHHHHH
Confidence 33666766676654
No 256
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.14 E-value=2.4e-11 Score=142.23 Aligned_cols=146 Identities=13% Similarity=0.168 Sum_probs=94.5
Q ss_pred EecCCCEEEEEcCCCCChHHHHHH--HhcccCCCC-----cEEEECCeec-ccCChHHHhcceEEEcCCCCCChhhHHHH
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISL--LQRFYDPSS-----GHITLDGVEI-QKLQVKWLRQQMGVVSQEPVLFSDTIRAN 1106 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~l--L~r~~~~~~-----G~I~idG~di-~~i~~~~lR~~i~~V~Qdp~LF~gTIreN 1106 (1236)
-|++|+.++|+||||||||||++. +.+..+++. +.|++|+.+. +......+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 689999999999999999999994 456666543 4899998763 22223444566666554 44554
Q ss_pred HHHHhhhchHHHhhhhchhhhhcCCCCCCC-hhHHHHHHHHHHHc--cCCCEEEEecCCCCCCHHHH------------H
Q 040099 1107 IAEMANANGFISGLQEGYDTLVGERGVQLS-GGQKQRVAIARAIV--KEPKILLLDEATSALDIESE------------R 1171 (1236)
Q Consensus 1107 L~~~a~~~~~i~~lp~Gldt~vge~G~~LS-GGQrQRlaLARALl--r~p~ILlLDEaTSaLD~~te------------~ 1171 (1236)
+. ++. ..+ ..+.+++.-+++++ .+|+++++||+|+.+|.+.. .
T Consensus 247 i~-----------~~~-----------~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~ 304 (400)
T 3lda_A 247 VA-----------YAR-----------AYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLA 304 (400)
T ss_dssp EE-----------EEE-----------CCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHH
T ss_pred EE-----------Eec-----------cCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHH
Confidence 31 000 011 12344555455544 46999999999999997644 4
Q ss_pred HHHHHHHHHc--CCCeEEEEecCch-------------------hhhh-cCEEEEEeCCE
Q 040099 1172 VVQDALDQVM--VDRTTLVVAHRLS-------------------TIKN-AHLIAVVSQGM 1209 (1236)
Q Consensus 1172 ~I~~~L~~~~--~~~TvI~IaHRl~-------------------ti~~-aD~I~Vl~~G~ 1209 (1236)
.+.+.|+++. .++|||+|+|-.. .+.+ +|.+++|+.|+
T Consensus 305 ~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 305 KFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred HHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 4556666554 3789999999832 2343 89999998763
No 257
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.14 E-value=2.8e-12 Score=145.61 Aligned_cols=115 Identities=18% Similarity=0.144 Sum_probs=80.2
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEE---CCeecCCCCHHHHh-cceEEEccCCCCC------chhH
Q 040099 408 LLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLI---DGVNLKEFQLKWIR-EKIGLVSQEPVLL------SSSI 477 (1236)
Q Consensus 408 ~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~---~g~~~~~~~~~~~r-~~i~~v~Q~~~l~------~~ti 477 (1236)
+++.+|++++|+||||||||||+|+|. +.+|++|+|.+ +|.++..... ..+ +.+|||+|+|.+. ..|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH
Confidence 355689999999999999999999999 99999999999 9988765432 222 3699999999552 3478
Q ss_pred HHHH--hcCC------------C-CCCHHHHHHHHHHhccHH-HHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 040099 478 RDNI--AYGK------------T-HATKEEIQAAAEAANASH-FIKNLPQGLDTNVGEHGIQLSGGQKQRVAIAR 536 (1236)
Q Consensus 478 ~~ni--~~g~------------~-~~~~~~~~~~~~~~~~~~-~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiAR 536 (1236)
||+ .|+. + ......+.++++..++.+ ...+.| ..|||.+++++.|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 888 4430 1 112345777777777764 444443 369998899999987
No 258
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.14 E-value=3.8e-11 Score=125.62 Aligned_cols=111 Identities=16% Similarity=0.132 Sum_probs=77.1
Q ss_pred eEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcE-EEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHHh
Q 040099 1033 CLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGH-ITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMA 1111 (1236)
Q Consensus 1033 s~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~-I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a 1111 (1236)
+|++++|+.++|+||+|+|||||++++.+.+.|.+|. +.+ -+..+.+.+..
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~----------------------------~~~~~~~~~~~ 83 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF----------------------------FDTKDLIFRLK 83 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE----------------------------EEHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE----------------------------EEHHHHHHHHH
Confidence 5678899999999999999999999999998766663 111 11222221111
Q ss_pred hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCC-CCCHHHHHHHHHHHHHHc-CCCeEEEE
Q 040099 1112 NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATS-ALDIESERVVQDALDQVM-VDRTTLVV 1189 (1236)
Q Consensus 1112 ~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTS-aLD~~te~~I~~~L~~~~-~~~TvI~I 1189 (1236)
..++ .+. .. -....+.+|++|+||||++ ++|+.....+.+.++... +++|+|++
T Consensus 84 ----------~~~~----~~~--~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~t 139 (180)
T 3ec2_A 84 ----------HLMD----EGK--DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIIT 139 (180)
T ss_dssp ----------HHHH----HTC--CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred ----------HHhc----Cch--HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 1011 000 00 1122345999999999996 899999999999887765 68899999
Q ss_pred ecCchh
Q 040099 1190 AHRLST 1195 (1236)
Q Consensus 1190 aHRl~t 1195 (1236)
||+...
T Consensus 140 sn~~~~ 145 (180)
T 3ec2_A 140 TNYSLQ 145 (180)
T ss_dssp CCCCSC
T ss_pred cCCChh
Confidence 998753
No 259
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.13 E-value=8.1e-12 Score=130.74 Aligned_cols=111 Identities=15% Similarity=0.156 Sum_probs=75.2
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCC
Q 040099 407 CLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKT 486 (1236)
Q Consensus 407 ~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~ 486 (1236)
+|++++|+.++|+||+|+|||||++.+++.+.|.+|.. +.|+ +..+.+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~------------------~~~~---------~~~~~~----- 79 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR------------------GYFF---------DTKDLI----- 79 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC------------------CCEE---------EHHHHH-----
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe------------------EEEE---------EHHHHH-----
Confidence 56788999999999999999999999999987776631 1111 111110
Q ss_pred CCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCC-CCCHHHHHHHHHH
Q 040099 487 HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATS-ALDSESGRMVQEA 565 (1236)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts-~lD~~~~~~i~~~ 565 (1236)
+++.... .. + ... -....+.+|++|+||||++ ++|+.....+.+.
T Consensus 80 ----~~~~~~~---------~~---~----------~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~l 125 (180)
T 3ec2_A 80 ----FRLKHLM---------DE---G----------KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYI 125 (180)
T ss_dssp ----HHHHHHH---------HH---T----------CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHH
T ss_pred ----HHHHHHh---------cC---c----------hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHH
Confidence 0111000 00 0 000 0112244999999999996 8999999999888
Q ss_pred HHHHc-cCceEEEEecCch
Q 040099 566 LDRVM-INRTTVIVSHRLS 583 (1236)
Q Consensus 566 l~~~~-~~~t~i~itH~~~ 583 (1236)
+.... +++++|++||...
T Consensus 126 l~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 126 ITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHTTCEEEEECCCCS
T ss_pred HHHHHHcCCCEEEEcCCCh
Confidence 87764 6789999999864
No 260
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.10 E-value=1e-12 Score=149.91 Aligned_cols=140 Identities=16% Similarity=0.206 Sum_probs=97.4
Q ss_pred CCcEEEEeEEEECCCCCCCccccceeEEe-------------------cCCcEEEEEcCCCCcHHHHHHHHHcCCC--CC
Q 040099 382 RGDIELKDVNFSYPARPDEQILNGFCLLI-------------------PNGTIAALVGTSGSGKSTVISLIQRFYD--PQ 440 (1236)
Q Consensus 382 ~~~i~~~~v~f~y~~~~~~~~l~~i~~~i-------------------~~g~~~~ivG~sGsGKSTl~~ll~~~~~--~~ 440 (1236)
++.|+++||++.|. ++++++++.+ ++|+++||+||||||||||+++|.|++. |+
T Consensus 35 ~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp CTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred ccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 45689999999993 5999999998 9999999999999999999999999998 99
Q ss_pred CcEEEE---CCeecCCCCHHHHhcceEEEccCCCCCc-hhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCcccc
Q 040099 441 AGEVLI---DGVNLKEFQLKWIREKIGLVSQEPVLLS-SSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTN 516 (1236)
Q Consensus 441 ~G~i~~---~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ 516 (1236)
+|+|.+ ||.+. +. ..++.++++ |+..++. -|+.+|+.+... + ..-.+ --..| -++
T Consensus 110 ~G~i~vi~~d~~~~---~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~------l------~~~~~-~i~~P-~~~-- 168 (308)
T 1sq5_A 110 HRRVELITTDGFLH---PN-QVLKERGLM-KKKGFPESYDMHRLVKFVSD------L------KSGVP-NVTAP-VYS-- 168 (308)
T ss_dssp CCCEEEEEGGGGBC---CH-HHHHHHTCT-TCTTSGGGBCHHHHHHHHHH------H------TTTCS-CEEEC-CEE--
T ss_pred CCeEEEEecCCccC---cH-HHHHhCCEe-ecCCCCCCccHHHHHHHHHH------H------hCCCC-ceecc-ccc--
Confidence 999999 88764 22 345678999 7665543 377777654210 0 00000 00112 111
Q ss_pred ccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCH
Q 040099 517 VGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDS 556 (1236)
Q Consensus 517 ~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~ 556 (1236)
.+.+ +|+..+.+.+.+|+++|+|.|....|.
T Consensus 169 -------~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 169 -------HLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp -------TTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred -------cccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 1111 333333456678999999999988774
No 261
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.03 E-value=2.9e-13 Score=147.94 Aligned_cols=135 Identities=18% Similarity=0.204 Sum_probs=56.2
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHH-cCC------------CCCCcEEEECCeecCCCCHHHHhcceEEEc
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQ-RFY------------DPQAGEVLIDGVNLKEFQLKWIREKIGLVS 467 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~-~~~------------~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 467 (1236)
...+++||++++|++++|+||||||||||+++|+ |++ +|..|++ +| ++|++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g--------------~~~~~ 78 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EG--------------KDYYF 78 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BT--------------TTBEE
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CC--------------CeEEE
Confidence 4678999999999999999999999999999999 998 4444433 23 34555
Q ss_pred cCCCCCch-hHHHHHh---------cCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCCh--HHHHHH-HH
Q 040099 468 QEPVLLSS-SIRDNIA---------YGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSG--GQKQRV-AI 534 (1236)
Q Consensus 468 Q~~~l~~~-ti~~ni~---------~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSg--GqkqRi-ai 534 (1236)
|++..|.. +..+|+. ++.+. +++.++++... .-.+.- .+.| .-+++. .-
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~------------~vild~---~~~g~~~~~~~~~~~ 140 (231)
T 3lnc_A 79 VDREEFLRLCSNGEIIEHAEVFGNFYGVPR---KNLEDNVDKGV------------STLLVI---DWQGAFKFMEMMREH 140 (231)
T ss_dssp CCHHHHHHHHHTTCEEEEEEETTEEEEEEC---TTHHHHHHHTC------------EEEEEC---CHHHHHHHHHHSGGG
T ss_pred ecHHHhhhhhhcCceehhhhhccccCCCCH---HHHHHHHHcCC------------eEEEEc---CHHHHHHHHHhcCCC
Confidence 55444332 2222322 22222 22333322211 000100 0111 113433 22
Q ss_pred HH-HhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHH
Q 040099 535 AR-AMIKDPRILLLDEATSALDSESGRMVQEALDRV 569 (1236)
Q Consensus 535 AR-al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~ 569 (1236)
++ .++..|+..++||++++.|..++..+.+.+.+.
T Consensus 141 ~~~v~v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~ 176 (231)
T 3lnc_A 141 VVSIFIMPPSMEELRRRLCGRRADDSEVVEARLKGA 176 (231)
T ss_dssp EEEEEEECSCHHHHHHC--------------CHHHH
T ss_pred eEEEEEECCcHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 22 346778888899999999998888887777554
No 262
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.03 E-value=5e-11 Score=140.14 Aligned_cols=141 Identities=21% Similarity=0.285 Sum_probs=87.5
Q ss_pred ccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCC----------CC
Q 040099 1029 FRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEP----------VL 1098 (1236)
Q Consensus 1029 L~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp----------~L 1098 (1236)
-++++|++++|+.++|||++|||||||++.|.+..+ .+.+.+..++ ...+++|+|+. -+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~~~~~l~DtpGl 215 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEEERFTLADIPGI 215 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSSCEEEEEECCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCcceEEEEecccc
Confidence 479999999999999999999999999999999842 3344433332 23455555543 22
Q ss_pred Chh-h----HHHH-HHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHH
Q 040099 1099 FSD-T----IRAN-IAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERV 1172 (1236)
Q Consensus 1099 F~g-T----IreN-L~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~ 1172 (1236)
..+ + +... +.....++.++.- +|.. .+.-.+||+||+||.++||+|..+|.||++ +.+|......
T Consensus 216 i~~a~~~~~L~~~fl~~~era~~lL~v----vDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~ 286 (416)
T 1udx_A 216 IEGASEGKGLGLEFLRHIARTRVLLYV----LDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEA 286 (416)
T ss_dssp CCCGGGSCCSCHHHHHHHTSSSEEEEE----EETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHhhhEE----eCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHH
Confidence 111 0 0000 1111111111110 1110 122236999999999999999999999999 9999976633
Q ss_pred HHHHHHHHc--CCCeEEEEe
Q 040099 1173 VQDALDQVM--VDRTTLVVA 1190 (1236)
Q Consensus 1173 I~~~L~~~~--~~~TvI~Ia 1190 (1236)
+ +.+.+.. .+.+++.||
T Consensus 287 ~-~~l~~~l~~~g~~vi~iS 305 (416)
T 1udx_A 287 V-KALADALAREGLAVLPVS 305 (416)
T ss_dssp H-HHHHHHHHTTTSCEEECC
T ss_pred H-HHHHHHHHhcCCeEEEEE
Confidence 3 3333332 356777765
No 263
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.02 E-value=2.8e-13 Score=151.69 Aligned_cols=143 Identities=16% Similarity=0.201 Sum_probs=98.7
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCC-CCCh-hhHH
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEP-VLFS-DTIR 1104 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp-~LF~-gTIr 1104 (1236)
.+++++++++++| ++|+||+|||||||+++|.+.+.+ |.|.++|.++........++++++++|++ ..+. -++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4799999999999 999999999999999999999876 79999999987666666777888888875 2222 2444
Q ss_pred HHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCC------------CCCHHHHHH
Q 040099 1105 ANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATS------------ALDIESERV 1172 (1236)
Q Consensus 1105 eNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTS------------aLD~~te~~ 1172 (1236)
||++..+...+. .. .+.....+.+.-..|||||+||..+++|+..+|++| |||.. --|.+....
T Consensus 110 Deid~~~~~r~~-~~-~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~ 185 (274)
T 2x8a_A 110 DEVDALCPRRSD-RE-TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLA 185 (274)
T ss_dssp ETCTTTCC-----------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHH
T ss_pred ehhhhhhcccCC-Cc-chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHH
Confidence 554321110000 00 000001111112358999999999999999999985 99975 235666666
Q ss_pred HHHHH
Q 040099 1173 VQDAL 1177 (1236)
Q Consensus 1173 I~~~L 1177 (1236)
|.+.+
T Consensus 186 il~~~ 190 (274)
T 2x8a_A 186 ILKTI 190 (274)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65554
No 264
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.02 E-value=5.5e-13 Score=145.68 Aligned_cols=186 Identities=14% Similarity=0.098 Sum_probs=73.5
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHh-ccc------------CCCCcEEEECCeecccCChHHHhcceEEEc
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQ-RFY------------DPSSGHITLDGVEIQKLQVKWLRQQMGVVS 1093 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~-r~~------------~~~~G~I~idG~di~~i~~~~lR~~i~~V~ 1093 (1236)
...+++||++++|+.+||+||||||||||+++|. +++ +|..|++ +|+++...+...++.. +.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~~ 89 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---CS 89 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---HH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---hh
Confidence 3578999999999999999999999999999999 998 4555543 4444333333333221 11
Q ss_pred CCCCCChhhHHHHHHHHhhhchHHH-hhhhchhhhhcCCCCCCChhHHHHH-HHHH-HHccCCCEEEEecCCCCCCHHHH
Q 040099 1094 QEPVLFSDTIRANIAEMANANGFIS-GLQEGYDTLVGERGVQLSGGQKQRV-AIAR-AIVKEPKILLLDEATSALDIESE 1170 (1236)
Q Consensus 1094 Qdp~LF~gTIreNL~~~a~~~~~i~-~lp~Gldt~vge~G~~LSGGQrQRl-aLAR-ALlr~p~ILlLDEaTSaLD~~te 1170 (1236)
++.+++.+++..|+.. ...+.+. .+..|....+.-.. .-...-++++ .-++ .++..|+..++||..++.|..++
T Consensus 90 ~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~vild~~~-~g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~~~~ 166 (231)
T 3lnc_A 90 NGEIIEHAEVFGNFYG--VPRKNLEDNVDKGVSTLLVIDW-QGAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRADDS 166 (231)
T ss_dssp TTCEEEEEEETTEEEE--EECTTHHHHHHHTCEEEEECCH-HHHHHHHHHSGGGEEEEEEECSCHHHHHHC---------
T ss_pred cCceehhhhhccccCC--CCHHHHHHHHHcCCeEEEEcCH-HHHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCCCCH
Confidence 1111111111111000 0000000 01111111111000 0001113333 2222 33567788889999999999999
Q ss_pred HHHHHHHHHHc------CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHh
Q 040099 1171 RVVQDALDQVM------VDRTTLVVAHRLSTI-KNAHLIAVVSQGMIVEKGSHESLI 1220 (1236)
Q Consensus 1171 ~~I~~~L~~~~------~~~TvI~IaHRl~ti-~~aD~I~Vl~~G~Ive~Gt~~eLl 1220 (1236)
..+++.|++.. ...+.+++.|.++.+ ...++++-...++....++..+++
T Consensus 167 ~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~~~~~~~~~~~~ 223 (231)
T 3lnc_A 167 EVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMKTCRQVGLRELL 223 (231)
T ss_dssp -----CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTBGGGEESHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhccccCcchhhHh
Confidence 88887775432 134666777766654 335555544445544444444443
No 265
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.00 E-value=3e-10 Score=128.20 Aligned_cols=141 Identities=21% Similarity=0.174 Sum_probs=101.3
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHH-Hhcce
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKW-LRQQM 1089 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~-lR~~i 1089 (1236)
+.++++++.|... . ++++|+ +|+.++++|++|+||||++..|.+.+.+.+|+|.+.|.|+..-...+ ++
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~--- 146 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLR--- 146 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHH---
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHH---
Confidence 4566777888532 1 688888 99999999999999999999999999999999999988875321110 10
Q ss_pred EEEcCCCCCChhhHHHHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecC-CCCCCHH
Q 040099 1090 GVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEA-TSALDIE 1168 (1236)
Q Consensus 1090 ~~V~Qdp~LF~gTIreNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEa-TSaLD~~ 1168 (1236)
++ .+.. |++-.. .+..-...+-||.+|+++...+++++|+||| ++++|..
T Consensus 147 ------------~~----~~~~-----------~l~~~~--~~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~ 197 (295)
T 1ls1_A 147 ------------LL----GEKV-----------GVPVLE--VMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEP 197 (295)
T ss_dssp ------------HH----HHHH-----------TCCEEE--CCTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHH
T ss_pred ------------Hh----cccC-----------CeEEEE--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHH
Confidence 11 1111 121110 1112345566899999998899999999999 9999998
Q ss_pred HHHHHHHHHHHHcCCCeEEEEe
Q 040099 1169 SERVVQDALDQVMVDRTTLVVA 1190 (1236)
Q Consensus 1169 te~~I~~~L~~~~~~~TvI~Ia 1190 (1236)
.-..+.+..+....+.+++++.
T Consensus 198 ~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 198 LMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp HHHHHHHHHHHHCCSEEEEEEE
T ss_pred HHHHHHHHhhhcCCCEEEEEEe
Confidence 8888888777666666665553
No 266
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.97 E-value=3.2e-11 Score=141.75 Aligned_cols=153 Identities=17% Similarity=0.121 Sum_probs=91.0
Q ss_pred ccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHh
Q 040099 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIA 482 (1236)
Q Consensus 403 l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~ 482 (1236)
-++++|++++|+.++|||+||||||||++.|++..+ .+.+.+... +...+++|.|+.. ..-++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftT-----l~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTT-----LSPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCS-----SCCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccce-----ecceeeEEEecCc-ceEEEEeccc
Confidence 478999999999999999999999999999999743 344443332 2345777777541 0112222211
Q ss_pred cCC-----CCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHH
Q 040099 483 YGK-----THATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE 557 (1236)
Q Consensus 483 ~g~-----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~ 557 (1236)
+.. ...... ..+..+.+. ..+.-+ +.. .+...+||+||+||+++||+|..+|.|+++ +.+|..
T Consensus 215 li~~a~~~~~L~~~-fl~~~era~--~lL~vv--Dls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLE-FLRHIARTR--VLLYVL--DAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHH-HHHHHTSSS--EEEEEE--ETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHH-HHHHHHHHH--hhhEEe--CCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 110 001111 111111111 111111 010 122346999999999999999999999999 999987
Q ss_pred HHHHHHHHHHH-Hc-cCceEEEEec
Q 040099 558 SGRMVQEALDR-VM-INRTTVIVSH 580 (1236)
Q Consensus 558 ~~~~i~~~l~~-~~-~~~t~i~itH 580 (1236)
.. ...+.+.+ +. .+.+++.||.
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCT
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEEC
Confidence 65 33333333 32 3567776664
No 267
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.97 E-value=8.8e-10 Score=124.34 Aligned_cols=138 Identities=14% Similarity=0.184 Sum_probs=95.2
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHHhhhchH
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGF 1116 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~~~~ 1116 (1236)
++|+.++++|++||||||++..|.+.+.+.+| +++.++.+|+ |..+..|++...+...
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~--~r~~a~eqL~~~~~~~-- 160 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDT--YRIAAVEQLKTYAELL-- 160 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCC--SSTTHHHHHHHHHTTT--
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCc--ccchHHHHHHHHHHhc--
Confidence 57999999999999999999999999988777 3577788887 4556667665333221
Q ss_pred HHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc---CCCeEEEE--ec
Q 040099 1117 ISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM---VDRTTLVV--AH 1191 (1236)
Q Consensus 1117 i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~---~~~TvI~I--aH 1191 (1236)
|++-... .+ ++..+.+|+++ ++|+++|+| |+++|+..+..+.+..+-.. .+.+++++ +|
T Consensus 161 ------gl~~~~~-----~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~ 224 (296)
T 2px0_A 161 ------QAPLEVC-----YT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATA 224 (296)
T ss_dssp ------TCCCCBC-----SS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTB
T ss_pred ------CCCeEec-----CC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCC
Confidence 1111111 12 34456777764 999999999 99999887766665443322 23456666 89
Q ss_pred Cchhhhh-cCEEEEEeCCEEEE
Q 040099 1192 RLSTIKN-AHLIAVVSQGMIVE 1212 (1236)
Q Consensus 1192 Rl~ti~~-aD~I~Vl~~G~Ive 1212 (1236)
..+.+.. +|++..++.|.|+-
T Consensus 225 ~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 225 KYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CHHHHHHHTTTTSSSCCCEEEE
T ss_pred CHHHHHHHHHHHhcCCCCEEEE
Confidence 9887765 77665566666664
No 268
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.96 E-value=7.8e-11 Score=133.70 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=69.5
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEE---CCeecCCCCHHHHhcceEEEccCCC-------------
Q 040099 408 LLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLI---DGVNLKEFQLKWIREKIGLVSQEPV------------- 471 (1236)
Q Consensus 408 ~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~---~g~~~~~~~~~~~r~~i~~v~Q~~~------------- 471 (1236)
|++.+|++++|+||||||||||+|+|.|+..|++|+|.+ +|.++.........+.+|||+|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 566789999999999999999999999999999999999 8988865442111236899999985
Q ss_pred ---CCch-hHHHHHhcCCC---CCCHHHHHHHHHHhcc-HHHHHhCCC
Q 040099 472 ---LLSS-SIRDNIAYGKT---HATKEEIQAAAEAANA-SHFIKNLPQ 511 (1236)
Q Consensus 472 ---l~~~-ti~~ni~~g~~---~~~~~~~~~~~~~~~~-~~~i~~l~~ 511 (1236)
+|+. |+ +|+.|+.. ......+.++++..++ .+...+.|.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 3544 78 99988531 1224568888888888 366666553
No 269
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.90 E-value=9.3e-11 Score=125.16 Aligned_cols=125 Identities=10% Similarity=0.037 Sum_probs=76.8
Q ss_pred eEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChh-hHHHHHHHHh
Q 040099 1033 CLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSD-TIRANIAEMA 1111 (1236)
Q Consensus 1033 s~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNL~~~a 1111 (1236)
|+++++|+.+||+||||||||||+++|.++++ .+.++|.++...+....+..++|++|++.+|.. +..+|+.+..
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence 67889999999999999999999999999974 688999888776655667889999999987765 4444432111
Q ss_pred hhchHHHhhh-hchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecC
Q 040099 1112 NANGFISGLQ-EGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEA 1161 (1236)
Q Consensus 1112 ~~~~~i~~lp-~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEa 1161 (1236)
..++.....+ ...+..+.++..-+-.+..|-+.-++....++.+++++.|
T Consensus 77 ~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~ 127 (205)
T 3tr0_A 77 TIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPP 127 (205)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECS
T ss_pred eeecccccchHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECc
Confidence 1110000000 0011111121112223455556666666777777777766
No 270
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.88 E-value=6.1e-10 Score=125.84 Aligned_cols=111 Identities=17% Similarity=0.323 Sum_probs=77.5
Q ss_pred eeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCC
Q 040099 406 FCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGK 485 (1236)
Q Consensus 406 i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~ 485 (1236)
++++.++|++++|+||+||||||++..|++.+.++.|+|.+.+.|... ....
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r---------------------~~a~------- 148 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR---------------------AAAI------- 148 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC---------------------HHHH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc---------------------HHHH-------
Confidence 345567899999999999999999999999999999999887765421 0111
Q ss_pred CCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHH---HHHHHhcCCCCEEEEeCcCCCCCHHHHHHH
Q 040099 486 THATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRV---AIARAMIKDPRILLLDEATSALDSESGRMV 562 (1236)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRi---aiARal~~~p~ililDE~ts~lD~~~~~~i 562 (1236)
+++...++.. |++. + ..+|||+.|++ +|+||+.++|+++|+|+|.. ......+
T Consensus 149 -----eqL~~~~~~~-----------gl~~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l 204 (306)
T 1vma_A 149 -----EQLKIWGERV-----------GATV-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNL 204 (306)
T ss_dssp -----HHHHHHHHHH-----------TCEE-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHH
T ss_pred -----HHHHHHHHHc-----------CCcE-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHH
Confidence 1122222222 2221 1 24689999999 99999999999999999974 2333444
Q ss_pred HHHHHH
Q 040099 563 QEALDR 568 (1236)
Q Consensus 563 ~~~l~~ 568 (1236)
++.+.+
T Consensus 205 ~~eL~~ 210 (306)
T 1vma_A 205 MEELRK 210 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 271
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.88 E-value=2.5e-11 Score=131.91 Aligned_cols=129 Identities=16% Similarity=0.208 Sum_probs=100.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC---CCCCcEEEE--------CCeecCC-CCHHHHhcceEEEccCC------CCC
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQRFY---DPQAGEVLI--------DGVNLKE-FQLKWIREKIGLVSQEP------VLL 473 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~~~~---~~~~G~i~~--------~g~~~~~-~~~~~~r~~i~~v~Q~~------~l~ 473 (1236)
.+.+++|+||+||||||++++|.+.+ .++.|.+.. +|.++.+ ....++++++++++|++ .++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35789999999999999999999877 788999887 6777653 45667889999999976 345
Q ss_pred chhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccc-cCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCC
Q 040099 474 SSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNV-GEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATS 552 (1236)
Q Consensus 474 ~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~-g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts 552 (1236)
..++.+++. .+++..++..+..++++...+.+..+.+ .++|.-++|+ .++++++.+++++|+.+++.
T Consensus 84 ~~~v~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~~ 151 (227)
T 1cke_A 84 GEDVSGEIR-------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDASS 151 (227)
T ss_dssp TEECHHHHT-------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECCH
T ss_pred CeeCchhhC-------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCCH
Confidence 557777763 4678888888888888877665655544 3456678887 56777889999999988753
No 272
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.87 E-value=6.2e-10 Score=132.38 Aligned_cols=64 Identities=13% Similarity=0.098 Sum_probs=55.4
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCC
Q 040099 386 ELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQ 455 (1236)
Q Consensus 386 ~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~ 455 (1236)
.+.+++... ..+|+|+||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|+++...+
T Consensus 8 ~l~~l~~~~-----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 8 KFRSLTLIN-----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp EEEEEEEEE-----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred ceeEEEEec-----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence 455555432 2489999999999 999999999999999999999999999999999999886544
No 273
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.87 E-value=2.9e-09 Score=120.37 Aligned_cols=98 Identities=19% Similarity=0.334 Sum_probs=74.0
Q ss_pred eeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHHh
Q 040099 1032 LCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMA 1111 (1236)
Q Consensus 1032 is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a 1111 (1236)
++++.++|+.++|+|++||||||++..|.+.+.+.+|+|.+.+.|+... ...+++...+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~---------------------~a~eqL~~~~ 155 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA---------------------AAIEQLKIWG 155 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH---------------------HHHHHHHHHH
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH---------------------HHHHHHHHHH
Confidence 4566789999999999999999999999999999999999988775321 1123332221
Q ss_pred hhchHHHhhhhchhhhhcCCCCCCChhHHHHH---HHHHHHccCCCEEEEecCCC
Q 040099 1112 NANGFISGLQEGYDTLVGERGVQLSGGQKQRV---AIARAIVKEPKILLLDEATS 1163 (1236)
Q Consensus 1112 ~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRl---aLARALlr~p~ILlLDEaTS 1163 (1236)
. . .|++. + ...|||+.|++ +++||+.++|+++|+|||..
T Consensus 156 ~------~--~gl~~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 156 E------R--VGATV-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp H------H--HTCEE-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred H------H--cCCcE-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 1 1 12221 1 23589999999 99999999999999999984
No 274
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.86 E-value=7e-11 Score=128.34 Aligned_cols=121 Identities=17% Similarity=0.178 Sum_probs=94.5
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhccc---CCCCcEEEE--------CCeecc-cCChHHHhcceEEEcCCC------CCC
Q 040099 1038 PGKTIALVGESGSGKSTVISLLQRFY---DPSSGHITL--------DGVEIQ-KLQVKWLRQQMGVVSQEP------VLF 1099 (1236)
Q Consensus 1038 ~Ge~vaIVG~SGSGKSTL~~lL~r~~---~~~~G~I~i--------dG~di~-~i~~~~lR~~i~~V~Qdp------~LF 1099 (1236)
.+.++||+|++||||||++++|.+.| .++.|.|.. +|.++. +....++++++++++|++ .++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35789999999999999999999877 678899988 788775 356778999999999986 456
Q ss_pred hhhHHHHHH--------HHhhhchHHHhhhhchhhhhc-CCCCCCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040099 1100 SDTIRANIA--------EMANANGFISGLQEGYDTLVG-ERGVQLSGGQKQRVAIARAIVKEPKILLLDEATS 1163 (1236)
Q Consensus 1100 ~gTIreNL~--------~~a~~~~~i~~lp~Gldt~vg-e~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTS 1163 (1236)
..++.+++. ..+..++++.....+..+.+. ++|.-++|+ .++++++++++++|+.+++.
T Consensus 84 ~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~~ 151 (227)
T 1cke_A 84 GEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDASS 151 (227)
T ss_dssp TEECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECCH
T ss_pred CeeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCCH
Confidence 667777763 345567778777777766653 456678887 46777889999999988764
No 275
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.86 E-value=2.6e-09 Score=120.51 Aligned_cols=138 Identities=11% Similarity=0.171 Sum_probs=91.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCH
Q 040099 411 PNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATK 490 (1236)
Q Consensus 411 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~ 490 (1236)
++|++++++||+||||||++..|++.+.+++| +++.++.+|++ ..+..|++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL~-------- 154 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQLK-------- 154 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHHH--------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHHH--------
Confidence 47999999999999999999999999988778 25777777763 333333332
Q ss_pred HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc
Q 040099 491 EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM 570 (1236)
Q Consensus 491 ~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~ 570 (1236)
..++.. |++-... ..++..+.+|+++ ++|+++|+| |+++|+.....+.+..+-+.
T Consensus 155 ----~~~~~~-----------gl~~~~~------~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~ 209 (296)
T 2px0_A 155 ----TYAELL-----------QAPLEVC------YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIP 209 (296)
T ss_dssp ----HHHTTT-----------TCCCCBC------SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSC
T ss_pred ----HHHHhc-----------CCCeEec------CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHh
Confidence 111111 1111111 1234567788865 999999999 99999876655554333222
Q ss_pred ---cCceEEEE--ecCchhHhh-cCeEEEEECCEEEE
Q 040099 571 ---INRTTVIV--SHRLSLIRN-ANIIAVIQQGKIVE 601 (1236)
Q Consensus 571 ---~~~t~i~i--tH~~~~~~~-ad~i~vl~~G~i~~ 601 (1236)
.+.+++++ +|....+.. +|++..++.+.++-
T Consensus 210 ~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 210 FESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred hcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 22345555 898877765 77776667777765
No 276
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.85 E-value=2.7e-10 Score=125.97 Aligned_cols=79 Identities=22% Similarity=0.215 Sum_probs=64.6
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHh---cccCCCCcEEE--------ECCeecc-cCChHHHhcceEEEcC
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQ---RFYDPSSGHIT--------LDGVEIQ-KLQVKWLRQQMGVVSQ 1094 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~---r~~~~~~G~I~--------idG~di~-~i~~~~lR~~i~~V~Q 1094 (1236)
.++++.+ ++|++++|+|||||||||++++|. |++.|++|.|. .+|.++. ......+++++++++|
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 94 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFV 94 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEe
Confidence 3555544 899999999999999999999999 99999999999 9999994 5568899999999996
Q ss_pred C------CCCChhhHHHHHH
Q 040099 1095 E------PVLFSDTIRANIA 1108 (1236)
Q Consensus 1095 d------p~LF~gTIreNL~ 1108 (1236)
+ ..++..++.+|+.
T Consensus 95 ~~~~~~~~~l~~~~v~~~i~ 114 (252)
T 4e22_A 95 SQNGQLQVILEGEDVSNEIR 114 (252)
T ss_dssp EETTEEEEEETTEECTTGGG
T ss_pred cCCCCceEEECCeehhHHHH
Confidence 5 4566778888764
No 277
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.84 E-value=6.6e-10 Score=132.18 Aligned_cols=54 Identities=17% Similarity=0.160 Sum_probs=50.9
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCC
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ 1081 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~ 1081 (1236)
.+|+|+||+|++ |++||+||||||||||+++|.|+++|++|+|.++|.++...+
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence 379999999999 999999999999999999999999999999999999987554
No 278
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.84 E-value=7.1e-09 Score=116.95 Aligned_cols=139 Identities=14% Similarity=0.138 Sum_probs=94.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
+.++++++.|+.. . ++++|+ +|++++++|++|+||||++..|++.+.+..|+|.+.+.|+..-...
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~------- 142 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR------- 142 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH-------
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH-------
Confidence 4566777778421 1 678888 9999999999999999999999999999999999887765421100
Q ss_pred EEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCE
Q 040099 465 LVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRI 544 (1236)
Q Consensus 465 ~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~i 544 (1236)
+ ++....+.. |++-... +..-+..+-+|.+|+++...++++
T Consensus 143 --------------~------------ql~~~~~~~-----------~l~~~~~--~~~~~p~~l~~~~l~~~~~~~~D~ 183 (295)
T 1ls1_A 143 --------------E------------QLRLLGEKV-----------GVPVLEV--MDGESPESIRRRVEEKARLEARDL 183 (295)
T ss_dssp --------------H------------HHHHHHHHH-----------TCCEEEC--CTTCCHHHHHHHHHHHHHHHTCCE
T ss_pred --------------H------------HHHHhcccC-----------CeEEEEc--CCCCCHHHHHHHHHHHHHhCCCCE
Confidence 0 000011111 1211111 011234456899999998899999
Q ss_pred EEEeCc-CCCCCHHHHHHHHHHHHHHccCceEE
Q 040099 545 LLLDEA-TSALDSESGRMVQEALDRVMINRTTV 576 (1236)
Q Consensus 545 lilDE~-ts~lD~~~~~~i~~~l~~~~~~~t~i 576 (1236)
+|+||| ++++|......+.+..+....+.+++
T Consensus 184 viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~l 216 (295)
T 1ls1_A 184 ILVDTAGRLQIDEPLMGELARLKEVLGPDEVLL 216 (295)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEE
T ss_pred EEEeCCCCccccHHHHHHHHHHhhhcCCCEEEE
Confidence 999999 99999988777777666553333433
No 279
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.83 E-value=2.3e-10 Score=128.85 Aligned_cols=73 Identities=21% Similarity=0.277 Sum_probs=44.7
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEE---CCeecCCCCHHHHhcceEEEccCCCCCc-----hhHHH
Q 040099 408 LLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLI---DGVNLKEFQLKWIREKIGLVSQEPVLLS-----SSIRD 479 (1236)
Q Consensus 408 ~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~---~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-----~ti~~ 479 (1236)
+++.+|++++|+||||||||||+|.|.|...|..|+|.+ +|+++.... ...+..++|++|.|.+.. .|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 567899999999999999999999999999999999998 887765432 122223899999997653 478 9
Q ss_pred HHh
Q 040099 480 NIA 482 (1236)
Q Consensus 480 ni~ 482 (1236)
|+.
T Consensus 246 ~l~ 248 (307)
T 1t9h_A 246 ELG 248 (307)
T ss_dssp HHG
T ss_pred HHH
Confidence 983
No 280
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.83 E-value=1.9e-11 Score=142.39 Aligned_cols=165 Identities=13% Similarity=0.162 Sum_probs=109.7
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhc------------ccCCCCcEEEECCeecccCC-hHHHhcce---EEEcCCCCC
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQR------------FYDPSSGHITLDGVEIQKLQ-VKWLRQQM---GVVSQEPVL 1098 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r------------~~~~~~G~I~idG~di~~i~-~~~lR~~i---~~V~Qdp~L 1098 (1236)
.+++|+++||||++|+|||||++.|.| ..+|+.|.|.++|..+..+. ...-++.+ ..+.+-|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 567899999999999999999999999 67899999999985432211 00111222 356677766
Q ss_pred Chh-hHHHHHH-----HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCC--CEEEEecCCCCCCHHHH
Q 040099 1099 FSD-TIRANIA-----EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEP--KILLLDEATSALDIESE 1170 (1236)
Q Consensus 1099 F~g-TIreNL~-----~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p--~ILlLDEaTSaLD~~te 1170 (1236)
..+ |..|++. ...+++. +...-+..+ ......+||+. +| +|+++||+++.+|+++-
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~d~-il~Vvd~~~---d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~ 159 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAVDA-IYQVVRAFD---DAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFV 159 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTCSE-EEEEEECCC---TTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHH-HHHHHhccc---cceeeeecccc------------CcchhhhhchhhhHHHHHHHH
Confidence 543 3333331 0111111 100000111 12223355543 89 99999999999999999
Q ss_pred HHHHHHHHHH-cCC-CeEEEEecCchhhhh-cCEEE-EEeCC-EEEEecChh
Q 040099 1171 RVVQDALDQV-MVD-RTTLVVAHRLSTIKN-AHLIA-VVSQG-MIVEKGSHE 1217 (1236)
Q Consensus 1171 ~~I~~~L~~~-~~~-~TvI~IaHRl~ti~~-aD~I~-Vl~~G-~Ive~Gt~~ 1217 (1236)
+..++.+++. .++ .|+ ++|.+..+.. ||+|. +|++| +++..|+..
T Consensus 160 ~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 160 EKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred HHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCCC
Confidence 9988888876 544 454 3999998865 99999 99999 888766543
No 281
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.81 E-value=1.7e-10 Score=130.92 Aligned_cols=70 Identities=19% Similarity=0.154 Sum_probs=52.3
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEE---CCeecccCChHHHh-cceEEEcCCCCCC------hhhHH
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITL---DGVEIQKLQVKWLR-QQMGVVSQEPVLF------SDTIR 1104 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~i---dG~di~~i~~~~lR-~~i~~V~Qdp~LF------~gTIr 1104 (1236)
++.+|++++|+||||||||||+++|. +.+|.+|+|.+ +|.++..... ..+ +.+++|+|+|-+. .-|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 55679999999999999999999999 99999999999 9998876442 223 3699999999542 3477
Q ss_pred HHH
Q 040099 1105 ANI 1107 (1236)
Q Consensus 1105 eNL 1107 (1236)
||+
T Consensus 238 e~l 240 (302)
T 2yv5_A 238 REV 240 (302)
T ss_dssp GGG
T ss_pred HHH
Confidence 887
No 282
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.81 E-value=4.2e-10 Score=134.79 Aligned_cols=156 Identities=15% Similarity=0.224 Sum_probs=96.1
Q ss_pred ceeEEecCCCEEEEEcCCCCChHHHHHHHhc--ccCCCCcEEEECCeecccCChHHHhc--ce-EEEcCCCCCChhhHHH
Q 040099 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQR--FYDPSSGHITLDGVEIQKLQVKWLRQ--QM-GVVSQEPVLFSDTIRA 1105 (1236)
Q Consensus 1031 ~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r--~~~~~~G~I~idG~di~~i~~~~lR~--~i-~~V~Qdp~LF~gTIre 1105 (1236)
.+++++.+|..+.|+|.|||||||+++.|.. ++.++.|++.+.++|.+......+.. ++ +.|-+|+. -..+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~~~Vvtd~~----~a~~ 234 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMK----DAAN 234 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBSSSCBCSHH----HHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCcccceeecCHH----HHHH
Confidence 4788999999999999999999999999876 67777899998888887655544432 11 12223321 1112
Q ss_pred HHH----HHhhhchHHHhhh----hchhhhhcCCCCCCChhHHHHH----------HHHHHHccCCC-EEEEecCCCCCC
Q 040099 1106 NIA----EMANANGFISGLQ----EGYDTLVGERGVQLSGGQKQRV----------AIARAIVKEPK-ILLLDEATSALD 1166 (1236)
Q Consensus 1106 NL~----~~a~~~~~i~~lp----~Gldt~vge~G~~LSGGQrQRl----------aLARALlr~p~-ILlLDEaTSaLD 1166 (1236)
.|. ++-...+...... .+|+..+. ..+|+||+|+. ++|+++-..|. ++++||+++-+|
T Consensus 235 ~L~~~~~EmerR~~ll~~~Gv~~i~~yn~~~~---~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~ 311 (512)
T 2ius_A 235 ALRWCVNEMERRYKLMSALGVRNLAGYNEKIA---EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMM 311 (512)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHH---HHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH---HHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHh
Confidence 221 1111111111110 12222221 13688887753 46777788898 899999999998
Q ss_pred HHHHHHHHHHHHHH---c--CCCeEEEEecCch
Q 040099 1167 IESERVVQDALDQV---M--VDRTTLVVAHRLS 1194 (1236)
Q Consensus 1167 ~~te~~I~~~L~~~---~--~~~TvI~IaHRl~ 1194 (1236)
... ..+.+.|.++ . .|.++|++|||++
T Consensus 312 ~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 312 TVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred hhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 432 3344444332 2 2679999999998
No 283
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.81 E-value=7.7e-12 Score=145.59 Aligned_cols=169 Identities=17% Similarity=0.149 Sum_probs=107.7
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHc------------CCCCCCcEEEECCeecCCCCH-HHHhcce---EEEccCCCC
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQR------------FYDPQAGEVLIDGVNLKEFQL-KWIREKI---GLVSQEPVL 472 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~------------~~~~~~G~i~~~g~~~~~~~~-~~~r~~i---~~v~Q~~~l 472 (1236)
++++|..++|||++|+|||||+|.|+| ..+|+.|.+.++|..+..+.. ..-++.+ .++.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 557899999999999999999999999 667999999998754321100 0011222 366677665
Q ss_pred Cch-hHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC--CEEEEeC
Q 040099 473 LSS-SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDP--RILLLDE 549 (1236)
Q Consensus 473 ~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p--~ililDE 549 (1236)
..+ |..|++ . .......+.+.+--++-.. .+ ......+||+. +| +++++||
T Consensus 96 ~~~~s~~e~L-------~-~~fl~~ir~~d~il~Vvd~---~~---d~~i~~v~~~~------------dP~~di~ilde 149 (392)
T 1ni3_A 96 TKGASTGVGL-------G-NAFLSHVRAVDAIYQVVRA---FD---DAEIIHVEGDV------------DPIRDLSIIVD 149 (392)
T ss_dssp CCCCCSSSSS-------C-HHHHHHHTTCSEEEEEEEC---CC---TTCSSCCSSSS------------CHHHHHHHHHH
T ss_pred ccCCcHHHHH-------H-HHHHHHHHHHHHHHHHHhc---cc---cceeeeecccc------------Ccchhhhhchh
Confidence 543 222211 1 1122222222110000000 00 12223356542 89 9999999
Q ss_pred cCCCCCHHHHHHHHHHHHHH-cc-CceEEEEecCchhHhh-cCeEE-EEECC-EEEEEeCc
Q 040099 550 ATSALDSESGRMVQEALDRV-MI-NRTTVIVSHRLSLIRN-ANIIA-VIQQG-KIVEKGTH 605 (1236)
Q Consensus 550 ~ts~lD~~~~~~i~~~l~~~-~~-~~t~i~itH~~~~~~~-ad~i~-vl~~G-~i~~~g~~ 605 (1236)
|++.+|+......++.+.+. .+ |+|+ ++|.+..+.. ||++. +|++| +++..|+.
T Consensus 150 el~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 150 ELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 99999999998888888877 54 4554 3999988765 99999 99999 87655543
No 284
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.78 E-value=3.2e-10 Score=125.37 Aligned_cols=98 Identities=16% Similarity=0.209 Sum_probs=74.5
Q ss_pred cccceeEEecCCcEEEEEcCCCCcHHHHHHHHH---cCCCCCCcEEE--------ECCeecC-CCCHHHHhcceEEEccC
Q 040099 402 ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQ---RFYDPQAGEVL--------IDGVNLK-EFQLKWIREKIGLVSQE 469 (1236)
Q Consensus 402 ~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~---~~~~~~~G~i~--------~~g~~~~-~~~~~~~r~~i~~v~Q~ 469 (1236)
++++.+ ++|++++|+|||||||||++++|+ |++.|++|.++ .+|.++. ......+++++++++|+
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 444443 789999999999999999999999 99999999999 9999984 45677899999999964
Q ss_pred ------CCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhC
Q 040099 470 ------PVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNL 509 (1236)
Q Consensus 470 ------~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l 509 (1236)
.+++..++.+||. .+++..++.....++.+...
T Consensus 96 ~~~~~~~~l~~~~v~~~i~-------~~~v~~~~s~~~~~~~vr~~ 134 (252)
T 4e22_A 96 QNGQLQVILEGEDVSNEIR-------TETVGNTASQAAAFPRVREA 134 (252)
T ss_dssp ETTEEEEEETTEECTTGGG-------SHHHHHHHHHHTTSHHHHHH
T ss_pred CCCCceEEECCeehhHHHH-------HHHHHHHHHHhcccHHHHHH
Confidence 3466668888865 24555566555555555443
No 285
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.76 E-value=1.7e-11 Score=137.82 Aligned_cols=132 Identities=18% Similarity=0.270 Sum_probs=92.2
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEE
Q 040099 386 ELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGL 465 (1236)
Q Consensus 386 ~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 465 (1236)
+++++.+.|. ...+++++++++++| ++|+||||||||||+++|++... .|.|.++|.++.+......++++++
T Consensus 51 ~l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 4556666663 235899999999999 99999999999999999999885 8999999887754444445567888
Q ss_pred EccCCC-CCc-hhHHHHH-hcCCCCCC-----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 040099 466 VSQEPV-LLS-SSIRDNI-AYGKTHAT-----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARA 537 (1236)
Q Consensus 466 v~Q~~~-l~~-~ti~~ni-~~g~~~~~-----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARa 537 (1236)
++|++. .+. -++.||| .++..... .++..+.+ ..++ ..|||||+||+.+++|
T Consensus 124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~-----~~ll---------------~~lsgg~~~~~~i~~a 183 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLL---------------VEMDGFEKDTAIVVMA 183 (278)
T ss_dssp HHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHH-----HHHH---------------HHHTTCCTTCCEEEEE
T ss_pred HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHH-----HHHH---------------HHHhCCCCCCCEEEEE
Confidence 888753 332 3666777 33321110 11111111 1122 1489999999999999
Q ss_pred hcCCCCE
Q 040099 538 MIKDPRI 544 (1236)
Q Consensus 538 l~~~p~i 544 (1236)
+..+|++
T Consensus 184 ~t~~p~~ 190 (278)
T 1iy2_A 184 ATNRPDI 190 (278)
T ss_dssp EESCTTS
T ss_pred ecCCchh
Confidence 9999976
No 286
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.75 E-value=1.1e-09 Score=116.82 Aligned_cols=73 Identities=10% Similarity=0.094 Sum_probs=56.6
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCch-hHHHHHhc
Q 040099 407 CLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAY 483 (1236)
Q Consensus 407 ~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~~ni~~ 483 (1236)
|+++++|++++|+||||||||||+++|+|+++ .+.+++.++...+....+..++|++|++.+|.. ++.+|+..
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLE 74 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEe
Confidence 57788999999999999999999999999973 688888877665544457789999999987765 66666543
No 287
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.75 E-value=1.7e-11 Score=141.49 Aligned_cols=168 Identities=16% Similarity=0.142 Sum_probs=103.7
Q ss_pred EEeEEEECCCCCCCccccceeEEecCC-------cEEEEEcCCCCcHHHHHHHHHcCC----CCCCcEEEECCeecCCCC
Q 040099 387 LKDVNFSYPARPDEQILNGFCLLIPNG-------TIAALVGTSGSGKSTVISLIQRFY----DPQAGEVLIDGVNLKEFQ 455 (1236)
Q Consensus 387 ~~~v~f~y~~~~~~~~l~~i~~~i~~g-------~~~~ivG~sGsGKSTl~~ll~~~~----~~~~G~i~~~g~~~~~~~ 455 (1236)
.++++..|. ...+++++++.+++| +.++|+||+|+|||||+++|++.+ .|++|.+..++.++..+.
T Consensus 21 ~~~l~~~~g---~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~ 97 (334)
T 1in4_A 21 PKSLDEFIG---QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAIL 97 (334)
T ss_dssp CSSGGGCCS---CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHH
T ss_pred CccHHHccC---cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHH
Confidence 344555553 235899999999877 899999999999999999999998 677888777666553221
Q ss_pred HHHHhcceEEEccCCCCCchhHHHHHhcCCCCC--C----HHHHHHHHHHhccHHHHHhCCC-CccccccCCCCCCChHH
Q 040099 456 LKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHA--T----KEEIQAAAEAANASHFIKNLPQ-GLDTNVGEHGIQLSGGQ 528 (1236)
Q Consensus 456 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~--~----~~~~~~~~~~~~~~~~i~~l~~-g~~t~~g~~g~~LSgGq 528 (1236)
....+..|.+++|...++. ++.|++....... + ..+. .+. +.. .+|. ++.. ...+...||+|+
T Consensus 98 ~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~---~~~--i~~---~l~~~~li~-at~~~~~Ls~~l 167 (334)
T 1in4_A 98 TSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPS---AKS--IRI---DIQPFTLVG-ATTRSGLLSSPL 167 (334)
T ss_dssp HHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC-----------------------CCCEEEE-EESCGGGSCHHH
T ss_pred HHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCcc---ccc--ccc---cCCCeEEEE-ecCCcccCCHHH
Confidence 1112457999999887765 7888774321100 0 0000 000 001 1111 2211 223345799999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHh
Q 040099 529 KQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIR 586 (1236)
Q Consensus 529 kqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~ 586 (1236)
|||++++ .+||+.+...+.+.|++..+.. -++|..+.+.
T Consensus 168 ~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~---~~~~~~~~~~ 206 (334)
T 1in4_A 168 RSRFGII----------------LELDFYTVKELKEIIKRAASLM---DVEIEDAAAE 206 (334)
T ss_dssp HTTCSEE----------------EECCCCCHHHHHHHHHHHHHHT---TCCBCHHHHH
T ss_pred HHhcCce----------------eeCCCCCHHHHHHHHHHHHHHc---CCCcCHHHHH
Confidence 9998654 6788877777877777654211 1356655543
No 288
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.74 E-value=1.1e-10 Score=134.66 Aligned_cols=148 Identities=15% Similarity=0.173 Sum_probs=100.9
Q ss_pred EeEEEEECCCCCCcccccceeEEecCC-------CEEEEEcCCCCChHHHHHHHhccc----CCCCcEEEECCeecccCC
Q 040099 1013 FLRVSFKYPTRPHIEVFRDLCLTIPPG-------KTIALVGESGSGKSTVISLLQRFY----DPSSGHITLDGVEIQKLQ 1081 (1236)
Q Consensus 1013 f~~Vsf~Y~~~~~~~vL~~is~~I~~G-------e~vaIVG~SGSGKSTL~~lL~r~~----~~~~G~I~idG~di~~i~ 1081 (1236)
.++++..|.+ ..+++++++.|++| +.++|+||+|+|||||+++|.+.. .+.+|.+..++.|+..+.
T Consensus 21 ~~~l~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~ 97 (334)
T 1in4_A 21 PKSLDEFIGQ---ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAIL 97 (334)
T ss_dssp CSSGGGCCSC---HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHH
T ss_pred CccHHHccCc---HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHH
Confidence 3345555543 24899999999887 889999999999999999999998 677888888777765432
Q ss_pred hHHHhcceEEEcCCCCCChhhHHHHHHHHhhhch--H----------HH-hhhh-chhhhhcCCCCCCChhHHHHHHHHH
Q 040099 1082 VKWLRQQMGVVSQEPVLFSDTIRANIAEMANANG--F----------IS-GLQE-GYDTLVGERGVQLSGGQKQRVAIAR 1147 (1236)
Q Consensus 1082 ~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~~~--~----------i~-~lp~-Gldt~vge~G~~LSGGQrQRlaLAR 1147 (1236)
....+..|.+|+|.+.++. ++.|++........ . +. .+|. ++.. .......||+|+|||++++
T Consensus 98 ~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~~l~- 174 (334)
T 1in4_A 98 TSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRFGII- 174 (334)
T ss_dssp HHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCGGGSCHHHHTTCSEE-
T ss_pred HHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCcccCCHHHHHhcCce-
Confidence 2222567999999888776 88888753221110 0 00 0110 1110 1123347999999998665
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc
Q 040099 1148 AIVKEPKILLLDEATSALDIESERVVQDALDQVM 1181 (1236)
Q Consensus 1148 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~ 1181 (1236)
.+||+.+...+.+.|++..
T Consensus 175 ---------------~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 175 ---------------LELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp ---------------EECCCCCHHHHHHHHHHHH
T ss_pred ---------------eeCCCCCHHHHHHHHHHHH
Confidence 7788888888888877654
No 289
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.73 E-value=8.4e-10 Score=132.19 Aligned_cols=158 Identities=18% Similarity=0.238 Sum_probs=94.2
Q ss_pred ceeEEecCCcEEEEEcCCCCcHHHHHHHHHc--CCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCc---h---h
Q 040099 405 GFCLLIPNGTIAALVGTSGSGKSTVISLIQR--FYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLS---S---S 476 (1236)
Q Consensus 405 ~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~--~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~---~---t 476 (1236)
.+++++.++..+.|.|+|||||||+++.|.. ++.++.|++.+.+.|.+......+.. -|+++. . -
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~~Vvtd~~~ 231 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLTEVVTDMKD 231 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSSSCBCSHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccceeecCHHH
Confidence 4788899999999999999999999999876 67777788888777766543333221 122211 0 1
Q ss_pred HHHHHhcCCCCCCHHHHH---HHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHH----------HHHHHhcCCCC
Q 040099 477 IRDNIAYGKTHATKEEIQ---AAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRV----------AIARAMIKDPR 543 (1236)
Q Consensus 477 i~~ni~~g~~~~~~~~~~---~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRi----------aiARal~~~p~ 543 (1236)
+.+.+.. ..+|++ +.++..++.++- +|+..+. ..+||||+||. ++|+++...|.
T Consensus 232 a~~~L~~-----~~~EmerR~~ll~~~Gv~~i~-----~yn~~~~---~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ 298 (512)
T 2ius_A 232 AANALRW-----CVNEMERRYKLMSALGVRNLA-----GYNEKIA---EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPY 298 (512)
T ss_dssp HHHHHHH-----HHHHHHHHHHHHHHTTCSSHH-----HHHHHHH---HHHHTTCCCBCTTC---------CCBCCCCCE
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHcCCccHH-----HHHHHHH---HHhhcCCcccccccccccchhccccccccCCc
Confidence 1112111 011111 122222221110 1111111 14788888753 46788888998
Q ss_pred -EEEEeCcCCCCCHHHHHHHHHHHHHH----c-cCceEEEEecCch
Q 040099 544 -ILLLDEATSALDSESGRMVQEALDRV----M-INRTTVIVSHRLS 583 (1236)
Q Consensus 544 -ililDE~ts~lD~~~~~~i~~~l~~~----~-~~~t~i~itH~~~ 583 (1236)
++++||+++.+|... ..+.+.+.++ + .|.++|++|||++
T Consensus 299 ivlvIDE~~~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 299 IVVLVDEFADLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEEETHHHHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEEeCHHHHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 899999999988432 3444444433 2 2679999999988
No 290
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.72 E-value=2.5e-11 Score=134.54 Aligned_cols=138 Identities=20% Similarity=0.268 Sum_probs=94.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
.+++++.+.|. ...+++++++++++| ++|+||||||||||++.|++... .|.+.++|.++.+......+++++
T Consensus 26 ~~l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 35667777674 235899999999999 99999999999999999999875 899999988765444444456678
Q ss_pred EEccCCC-CCc-hhHHHHH-hcCCCCC-----CHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 040099 465 LVSQEPV-LLS-SSIRDNI-AYGKTHA-----TKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIAR 536 (1236)
Q Consensus 465 ~v~Q~~~-l~~-~ti~~ni-~~g~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiAR 536 (1236)
+++|+.. .+. -++.||| .++.... ..++..+.. ..++ ..|||||+||+.+++
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~-----~~ll---------------~~l~g~~~~~~~i~~ 158 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLL---------------VEMDGFEKDTAIVVM 158 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHH-----HHHH---------------HHHHTCCTTCCEEEE
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHH-----HHHH---------------HHHhCCCCCCCEEEE
Confidence 8888753 332 3566666 3332111 011111111 1122 147899999999999
Q ss_pred HhcCCCCEEEEeCcC
Q 040099 537 AMIKDPRILLLDEAT 551 (1236)
Q Consensus 537 al~~~p~ililDE~t 551 (1236)
|+..+|++ ||++.
T Consensus 159 a~t~~p~~--ld~~l 171 (254)
T 1ixz_A 159 AATNRPDI--LDPAL 171 (254)
T ss_dssp EEESCGGG--SCGGG
T ss_pred EccCCchh--CCHHH
Confidence 99999986 56554
No 291
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.71 E-value=2.8e-08 Score=114.66 Aligned_cols=151 Identities=20% Similarity=0.306 Sum_probs=86.7
Q ss_pred ccccceeE--EecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEE-EECCeecCCCCHHHHhcceEEEccCCCCCchhH
Q 040099 401 QILNGFCL--LIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV-LIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSI 477 (1236)
Q Consensus 401 ~~l~~i~~--~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i-~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti 477 (1236)
+-|+.+-= -+++|+++.|.||+|||||||+..++.......|.+ +++... ..+. ...+++|+.+|+..
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~l~------ 117 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDSLL------ 117 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGGCE------
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHHeE------
Confidence 34554322 578999999999999999999887776554444433 333211 0010 01111221111100
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCC--CCEEEEeCcCCCC-
Q 040099 478 RDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKD--PRILLLDEATSAL- 554 (1236)
Q Consensus 478 ~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~--p~ililDE~ts~l- 554 (1236)
+-. ..+. .|-+.++++++++ |+++|+||+++.+
T Consensus 118 ---------------------------------------i~~---~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 118 ---------------------------------------VSQ---PDTG--EQALEIADMLVRSGALDIIVIDSVAALVP 153 (349)
T ss_dssp ---------------------------------------EEC---CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCC
T ss_pred ---------------------------------------Eec---CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcc
Confidence 000 0122 2345678888765 9999999999998
Q ss_pred ---------CH---HHHHHHHHHHHHH----c-cCceEEEEecCch----------------hHhh-cCeEEEEECCEEE
Q 040099 555 ---------DS---ESGRMVQEALDRV----M-INRTTVIVSHRLS----------------LIRN-ANIIAVIQQGKIV 600 (1236)
Q Consensus 555 ---------D~---~~~~~i~~~l~~~----~-~~~t~i~itH~~~----------------~~~~-ad~i~vl~~G~i~ 600 (1236)
|+ ...+.+.+.++++ . .+.|+|+++|-.. .+++ ||.++.++.+++.
T Consensus 154 ~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~ 233 (349)
T 2zr9_A 154 RAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETL 233 (349)
T ss_dssp HHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEE
T ss_pred hhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeee
Confidence 32 1222344444443 1 3789999999543 2444 9999999887766
Q ss_pred EEeC
Q 040099 601 EKGT 604 (1236)
Q Consensus 601 ~~g~ 604 (1236)
..|+
T Consensus 234 k~g~ 237 (349)
T 2zr9_A 234 KDGT 237 (349)
T ss_dssp CSSS
T ss_pred ecCc
Confidence 5443
No 292
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.71 E-value=6.4e-10 Score=116.92 Aligned_cols=128 Identities=20% Similarity=0.345 Sum_probs=55.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC-------------CCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHH
Q 040099 413 GTIAALVGTSGSGKSTVISLIQRFYD-------------PQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRD 479 (1236)
Q Consensus 413 g~~~~ivG~sGsGKSTl~~ll~~~~~-------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 479 (1236)
|++++|+||||||||||+++|+|+++ |..|++ +|.++...+...++..+ .|+..++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEec
Confidence 67899999999999999999999998 778875 77766655555544332 1333333333333
Q ss_pred HHhcCCCCCCHHHHHHHHHHhc---c------HHHHHh--------------CCCCccccccCCCCCCChHHHHHHHHHH
Q 040099 480 NIAYGKTHATKEEIQAAAEAAN---A------SHFIKN--------------LPQGLDTNVGEHGIQLSGGQKQRVAIAR 536 (1236)
Q Consensus 480 ni~~g~~~~~~~~~~~~~~~~~---~------~~~i~~--------------l~~g~~t~~g~~g~~LSgGqkqRiaiAR 536 (1236)
|+ ||.+ .+++.++++... + ...+.. -++-+...+.++|..-....+||++-|+
T Consensus 76 ~~-yg~~---~~~i~~~l~~g~~~il~~~~~g~~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~ 151 (186)
T 3a00_A 76 NY-YGST---VASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQ 151 (186)
T ss_dssp EE-EEEE---HHHHHHHHHTTCEEEEECCHHHHHHHHTCGGGCCEEEEEECSCC--------------------------
T ss_pred ee-ccCc---HHHHHHHHHcCCeEEEEEcHHHHHHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 32 3322 222322222100 0 001111 1134555666777777778888999888
Q ss_pred Hhc-----CCCCEEEEeC
Q 040099 537 AMI-----KDPRILLLDE 549 (1236)
Q Consensus 537 al~-----~~p~ililDE 549 (1236)
.-+ ..++.+|..+
T Consensus 152 ~~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 152 AELAYAETGAHDKVIVND 169 (186)
T ss_dssp -------CCCCSEEEECS
T ss_pred HHHHhhcccCCcEEEECc
Confidence 755 5667777765
No 293
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.70 E-value=3.3e-11 Score=135.43 Aligned_cols=138 Identities=19% Similarity=0.252 Sum_probs=95.7
Q ss_pred EEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEE
Q 040099 1012 QFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGV 1091 (1236)
Q Consensus 1012 ~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1091 (1236)
+++++...|.. ..+++++++++++| ++|+||+|||||||+++|.+... .|.|.++|.++.+......+++++.
T Consensus 51 ~l~~l~~~~~~---~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHHC---HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 34556666642 24899999999999 99999999999999999999985 7999999988866555556677888
Q ss_pred EcCCCC-CCh-hhHHHHHHHHhhhchH-H----HhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCC
Q 040099 1092 VSQEPV-LFS-DTIRANIAEMANANGF-I----SGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEAT 1162 (1236)
Q Consensus 1092 V~Qdp~-LF~-gTIreNL~~~a~~~~~-i----~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaT 1162 (1236)
++|++. .+. -++.||++........ . ....+-++..+ ..|||||+||..+++|+..+|++ ||++.
T Consensus 124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll----~~lsgg~~~~~~i~~a~t~~p~~--ld~~l 195 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL----VEMDGFEKDTAIVVMAATNRPDI--LDPAL 195 (278)
T ss_dssp HHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHH----HHHTTCCTTCCEEEEEEESCTTS--SCHHH
T ss_pred HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHH----HHHhCCCCCCCEEEEEecCCchh--CCHhH
Confidence 888753 232 3556666433211000 0 00001112222 24899999999999999999987 67764
No 294
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.69 E-value=1.5e-09 Score=114.54 Aligned_cols=134 Identities=21% Similarity=0.268 Sum_probs=77.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCC-----------CCcEEEECCeeccc--CChHHHhcceEEEcC---CC--C--CCh
Q 040099 1041 TIALVGESGSGKSTVISLLQRFYDP-----------SSGHITLDGVEIQK--LQVKWLRQQMGVVSQ---EP--V--LFS 1100 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~~~-----------~~G~I~idG~di~~--i~~~~lR~~i~~V~Q---dp--~--LF~ 1100 (1236)
+++|+|++|||||||++.|.+...+ ..|+|.++|.++.- ++....++..++++| +. . .|+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 7999999999999999999998754 57999999976531 222122222333333 21 1 222
Q ss_pred hh---HHHHHHHHhhhchHHHhh-hhchh-hhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040099 1101 DT---IRANIAEMANANGFISGL-QEGYD-TLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQD 1175 (1236)
Q Consensus 1101 gT---IreNL~~~a~~~~~i~~l-p~Gld-t~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~ 1175 (1236)
.+ -.+|+..... .+... +.... -.++.. ..|..-..+...+||++.++|+++++| ||++|.+....+.+
T Consensus 111 ~~~~~s~~~~~~~~~---~~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~ 184 (191)
T 1oix_A 111 IAKHLTYENVERWLK---ELRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQ 184 (191)
T ss_dssp TTCHHHHHTHHHHHH---HHHHHSCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHH
T ss_pred CcCHHHHHHHHHHHH---HHHHhcCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHH
Confidence 22 1233321110 01100 00000 001111 011111123467899999999999999 99999999999988
Q ss_pred HHHHH
Q 040099 1176 ALDQV 1180 (1236)
Q Consensus 1176 ~L~~~ 1180 (1236)
.|.+.
T Consensus 185 ~l~~~ 189 (191)
T 1oix_A 185 TILTE 189 (191)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88653
No 295
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.68 E-value=4.2e-08 Score=113.17 Aligned_cols=143 Identities=22% Similarity=0.321 Sum_probs=86.0
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcE-EEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHHhhh
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGH-ITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANA 1113 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~-I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~ 1113 (1236)
-+++|+.+.|.||+|||||||+..+..-.....|. +++|... ..+. ...+++++-+|+..
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~l~---------------- 117 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDSLL---------------- 117 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGGCE----------------
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHHeE----------------
Confidence 68899999999999999999987776554333343 3444321 1111 11122222221111
Q ss_pred chHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccC--CCEEEEecCCCCC----------CH---HHHHHHHHHHH
Q 040099 1114 NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKE--PKILLLDEATSAL----------DI---ESERVVQDALD 1178 (1236)
Q Consensus 1114 ~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~--p~ILlLDEaTSaL----------D~---~te~~I~~~L~ 1178 (1236)
+-.. .+. .|.+.++++++++ |+++|+||+|+-+ |+ ...+.+.+.++
T Consensus 118 --------------i~~~---~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~ 178 (349)
T 2zr9_A 118 --------------VSQP---DTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 178 (349)
T ss_dssp --------------EECC---SSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHH
T ss_pred --------------EecC---CCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHH
Confidence 0000 122 3456788988865 9999999999998 32 12223444444
Q ss_pred HH-----cCCCeEEEEecCch----------------hhh-hcCEEEEEeCCEEEEecC
Q 040099 1179 QV-----MVDRTTLVVAHRLS----------------TIK-NAHLIAVVSQGMIVEKGS 1215 (1236)
Q Consensus 1179 ~~-----~~~~TvI~IaHRl~----------------ti~-~aD~I~Vl~~G~Ive~Gt 1215 (1236)
++ ..++|+|+++|-.. .++ .||.++.+..+++...|+
T Consensus 179 ~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 179 KMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp HHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred HHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 43 13899999999543 243 489999998877665554
No 296
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.67 E-value=3.6e-09 Score=116.09 Aligned_cols=168 Identities=14% Similarity=0.136 Sum_probs=88.6
Q ss_pred Cccccce-eEEecCCcEEEEEcCCCCcHHHHHH-HHHcCCCCCCcEEEECCeecCCCCHHHHh---cceEEEccCCCCCc
Q 040099 400 EQILNGF-CLLIPNGTIAALVGTSGSGKSTVIS-LIQRFYDPQAGEVLIDGVNLKEFQLKWIR---EKIGLVSQEPVLLS 474 (1236)
Q Consensus 400 ~~~l~~i-~~~i~~g~~~~ivG~sGsGKSTl~~-ll~~~~~~~~G~i~~~g~~~~~~~~~~~r---~~i~~v~Q~~~l~~ 474 (1236)
.+.|+++ .--+++|++++|.||+|||||||+. ++....++..+.+++++.. +...++ .++++.+|+...
T Consensus 9 ~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~-- 82 (247)
T 2dr3_A 9 IPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEE-- 82 (247)
T ss_dssp CTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHH--
T ss_pred chhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhh--
Confidence 3467776 6679999999999999999999965 5455554444555555432 222222 234444432100
Q ss_pred hhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc--CCCCEEEEeCcCC
Q 040099 475 SSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI--KDPRILLLDEATS 552 (1236)
Q Consensus 475 ~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~--~~p~ililDE~ts 552 (1236)
.+|+.+-... . ..+..++. .+..+-+. +....+....++.++ .+|+++++|++++
T Consensus 83 ---~~~l~~~~~~--~-------------~~~~~~~~-~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~ 139 (247)
T 2dr3_A 83 ---KGMFAMVDAF--T-------------AGIGKSKE-YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTT 139 (247)
T ss_dssp ---HTSEEEEECS--T-------------TTTCC--C-CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGG
T ss_pred ---CCcEEEEecc--h-------------hhcccccc-cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchH
Confidence 0011110000 0 00000000 00000011 112333334444444 4799999999999
Q ss_pred CC--CHHHHHHHHHHHHHHc--cCceEEEEecCchh--------H-hhcCeEEEEEC
Q 040099 553 AL--DSESGRMVQEALDRVM--INRTTVIVSHRLSL--------I-RNANIIAVIQQ 596 (1236)
Q Consensus 553 ~l--D~~~~~~i~~~l~~~~--~~~t~i~itH~~~~--------~-~~ad~i~vl~~ 596 (1236)
-+ |+.........+.++. .|.|+|+++|.... + ..||.|+.|+.
T Consensus 140 l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 140 LYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp GTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 88 5533344444444432 47899999997654 3 44899999974
No 297
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.67 E-value=2.7e-09 Score=133.77 Aligned_cols=135 Identities=18% Similarity=0.187 Sum_probs=99.8
Q ss_pred eEEecCCCEEEEEcCCCCChHHHHHHHhcccCC--CCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHH
Q 040099 1033 CLTIPPGKTIALVGESGSGKSTVISLLQRFYDP--SSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEM 1110 (1236)
Q Consensus 1033 s~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~--~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~ 1110 (1236)
|+++++|++++|+|++|+|||||++.|.+...+ ..|+| .+|.++.+....+.++.+++.+|.+.++..+++.||...
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 467889999999999999999999999987765 68998 789999999999999999999999988877665554211
Q ss_pred hhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Q 040099 1111 ANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVA 1190 (1236)
Q Consensus 1111 a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~Ia 1190 (1236)
.+..+ ++ . . ..+-.-..+..++++| ||.++|..++..+..+.+ .+.++|++.
T Consensus 82 pG~~~-------------------f~-~--~--~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~~~~~~---~~ip~ilv~ 133 (665)
T 2dy1_A 82 PGYGD-------------------FV-G--E--IRGALEAADAALVAVS-AEAGVQVGTERAWTVAER---LGLPRMVVV 133 (665)
T ss_dssp CCSGG-------------------GH-H--H--HHHHHHHCSEEEEEEE-TTTCSCHHHHHHHHHHHH---TTCCEEEEE
T ss_pred CCccc-------------------hH-H--H--HHHHHhhcCcEEEEEc-CCcccchhHHHHHHHHHH---ccCCEEEEe
Confidence 11111 11 0 1 1111124577899999 999999999866655432 377899999
Q ss_pred cCchhh
Q 040099 1191 HRLSTI 1196 (1236)
Q Consensus 1191 HRl~ti 1196 (1236)
|+++..
T Consensus 134 NKiD~~ 139 (665)
T 2dy1_A 134 TKLDKG 139 (665)
T ss_dssp ECGGGC
T ss_pred cCCchh
Confidence 998853
No 298
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.64 E-value=2.9e-10 Score=120.02 Aligned_cols=134 Identities=20% Similarity=0.238 Sum_probs=75.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-----------CCcEEEECCeecCC--CCHHHHhcceEEEccC---C--CC--Cc
Q 040099 415 IAALVGTSGSGKSTVISLIQRFYDP-----------QAGEVLIDGVNLKE--FQLKWIREKIGLVSQE---P--VL--LS 474 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~~~-----------~~G~i~~~g~~~~~--~~~~~~r~~i~~v~Q~---~--~l--~~ 474 (1236)
+++|+|++|||||||++.+.|...| +.|+|.++|.++.- ++....++..++++|. . .+ ++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999998765 57899999976531 1111111222333321 1 01 11
Q ss_pred hh---HHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCc
Q 040099 475 SS---IRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLD-TNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEA 550 (1236)
Q Consensus 475 ~t---i~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ 550 (1236)
.+ -.+|+. ..+.+..+. .+.... -.++.+ ..|..-..+...+||+++.+|+++++|
T Consensus 111 ~~~~~s~~~~~--------~~~~~~~~~---------~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld-- 170 (191)
T 1oix_A 111 IAKHLTYENVE--------RWLKELRDH---------ADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE-- 170 (191)
T ss_dssp TTCHHHHHTHH--------HHHHHHHHH---------SCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--
T ss_pred CcCHHHHHHHH--------HHHHHHHHh---------cCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--
Confidence 11 011110 001010000 000000 111211 112222234578899999999999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 040099 551 TSALDSESGRMVQEALDR 568 (1236)
Q Consensus 551 ts~lD~~~~~~i~~~l~~ 568 (1236)
||++|......+++.|.+
T Consensus 171 ~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 171 TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CCTTTCTTHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHH
Confidence 999999999888888754
No 299
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.63 E-value=9.1e-10 Score=118.71 Aligned_cols=75 Identities=13% Similarity=0.150 Sum_probs=52.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCC--------
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQ-------- 455 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~-------- 455 (1236)
.|+++|++..|. . ++++++ ++++|+||||||||||+++|+|++.|++|+|.++|.++...+
T Consensus 9 ~l~l~~~~~~~~----~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA----R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE----E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC----C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 478888865552 1 566666 899999999999999999999999999999999999884332
Q ss_pred HHHHhcceEEEccC
Q 040099 456 LKWIREKIGLVSQE 469 (1236)
Q Consensus 456 ~~~~r~~i~~v~Q~ 469 (1236)
....+.+++||+|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 12246789999984
No 300
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.63 E-value=7.1e-09 Score=117.56 Aligned_cols=66 Identities=18% Similarity=0.164 Sum_probs=45.9
Q ss_pred EEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEE---CCeecccCChHHHhcceEEEcCCCCCC
Q 040099 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITL---DGVEIQKLQVKWLRQQMGVVSQEPVLF 1099 (1236)
Q Consensus 1034 ~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~i---dG~di~~i~~~~lR~~i~~V~Qdp~LF 1099 (1236)
|++.+|+.++|+||||||||||+++|.|+..|++|+|.+ +|.++.........+++++|+|+|.+.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~ 232 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFA 232 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSST
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCC
Confidence 466789999999999999999999999999999999999 999987654221124699999999653
No 301
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.63 E-value=2e-08 Score=110.13 Aligned_cols=162 Identities=17% Similarity=0.156 Sum_probs=90.4
Q ss_pred cccce-eEEecCCCEEEEEcCCCCChHHHHH-HHhcccCCCCcEEEECCeecccCChHHHhc---ceEEEcCCCCCChhh
Q 040099 1028 VFRDL-CLTIPPGKTIALVGESGSGKSTVIS-LLQRFYDPSSGHITLDGVEIQKLQVKWLRQ---QMGVVSQEPVLFSDT 1102 (1236)
Q Consensus 1028 vL~~i-s~~I~~Ge~vaIVG~SGSGKSTL~~-lL~r~~~~~~G~I~idG~di~~i~~~~lR~---~i~~V~Qdp~LF~gT 1102 (1236)
.|+.+ .--+++|+.++|+||+|||||||+. ++....+...+.+++++.. +...+++ ++++.+|+...
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~---- 82 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEE---- 82 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHH----
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhh----
Confidence 46666 6689999999999999999999954 5555555444556665432 2333332 34544443210
Q ss_pred HHHHHHHHhhhch----HHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHc--cCCCEEEEecCCCCC--CHHHHHHHH
Q 040099 1103 IRANIAEMANANG----FISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIV--KEPKILLLDEATSAL--DIESERVVQ 1174 (1236)
Q Consensus 1103 IreNL~~~a~~~~----~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALl--r~p~ILlLDEaTSaL--D~~te~~I~ 1174 (1236)
..|+ ...+ .+..++. .+..+.+ -+....+.+..++.++ .+|+++++|++|+-+ |+...+...
T Consensus 83 -~~~l----~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l 152 (247)
T 2dr3_A 83 -KGMF----AMVDAFTAGIGKSKE-YEKYIVH----DLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSII 152 (247)
T ss_dssp -HTSE----EEEECSTTTTCC--C-CCSCBCS----CCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHH
T ss_pred -CCcE----EEEecchhhcccccc-ccccccc----CccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHH
Confidence 0011 0000 0000000 0000001 1123445555555555 479999999999988 543333333
Q ss_pred HHHHHHc--CCCeEEEEecCchh--------h-hhcCEEEEEeC
Q 040099 1175 DALDQVM--VDRTTLVVAHRLST--------I-KNAHLIAVVSQ 1207 (1236)
Q Consensus 1175 ~~L~~~~--~~~TvI~IaHRl~t--------i-~~aD~I~Vl~~ 1207 (1236)
..+.+.. .++|+|+++|.... + ..||.|+.|+.
T Consensus 153 ~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 153 LQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 3443332 47899999998765 3 45899999964
No 302
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.61 E-value=1.3e-09 Score=135.82 Aligned_cols=157 Identities=16% Similarity=0.174 Sum_probs=101.2
Q ss_pred CccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC-cEEEECCeecCCCCHHHHhcceEEEccCC--------
Q 040099 400 EQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQA-GEVLIDGVNLKEFQLKWIREKIGLVSQEP-------- 470 (1236)
Q Consensus 400 ~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~-G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~-------- 470 (1236)
..+++++++.+++|+.++|+||+|+|||||++.|.+..++.. |.+.+++.+.... ...++++||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHH
Confidence 468999999999999999999999999999999999999888 7888887665432 34688887754
Q ss_pred --------------CCCc-hhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 040099 471 --------------VLLS-SSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIA 535 (1236)
Q Consensus 471 --------------~l~~-~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiA 535 (1236)
+.+. .++.+|+..++.......+... ......+.+..+ +.. ......+|+|++|++..+
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~~----~~~-~~~~g~~~~g~~~~i~~g 195 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGDV----RHD-PFQSGGLGTPAHERVEPG 195 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCEE----CCC-CC----CCCCGGGGEECC
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCceE----Eec-hhhcCCccccccccccCc
Confidence 1111 1333333322110000000000 000011111111 000 112235999999999999
Q ss_pred HHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHH
Q 040099 536 RAMIKDPRILLLDEATSALDSESGRMVQEALDR 568 (1236)
Q Consensus 536 Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~ 568 (1236)
+....++.+|+|||.-. |++.....+.+.|++
T Consensus 196 ~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 196 MIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999988 798888877777764
No 303
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.59 E-value=4.4e-08 Score=117.67 Aligned_cols=177 Identities=13% Similarity=0.130 Sum_probs=109.5
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCc-EEEECCeecCCCCHHHHhcce-EEEccCCCCCchhHH
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG-EVLIDGVNLKEFQLKWIREKI-GLVSQEPVLLSSSIR 478 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G-~i~~~g~~~~~~~~~~~r~~i-~~v~Q~~~l~~~ti~ 478 (1236)
+.|+++..-+++|+++.|.|++|+|||||+..+++...+..| .|.+-+. +.+...+.+++ +....- . .
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~---E~s~~~l~~r~~~~~~~~------~-~ 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL---EMSAQQLVMRMLCAEGNI------N-A 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES---SSCHHHHHHHHHHHHHTC------C-H
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC---CCCHHHHHHHHHHHHcCC------C-H
Confidence 478888888999999999999999999999999887766545 4554332 23334433331 110000 0 1
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc--CCCCEEEEeCcCCCCCH
Q 040099 479 DNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI--KDPRILLLDEATSALDS 556 (1236)
Q Consensus 479 ~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~--~~p~ililDE~ts~lD~ 556 (1236)
+.+.-| ..++++.....+.. +.+...| -.+.. ...+|.+|.+ +.||++. .+|+++++|+++.-.++
T Consensus 261 ~~l~~g--~l~~~~~~~~~~a~---~~l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 261 QNLRTG--KLTPEDWGKLTMAM---GSLSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp HHHHTS--CCCHHHHHHHHHHH---HHHHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCS
T ss_pred HHHhcC--CCCHHHHHHHHHHH---HHHhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccC
Confidence 123323 23444443333222 2232222 11222 2478999876 5667776 68999999999998743
Q ss_pred H--------HHHHHHHHHHHHcc--CceEEEEec---------C--ch--------hHh-hcCeEEEEECCEE
Q 040099 557 E--------SGRMVQEALDRVMI--NRTTVIVSH---------R--LS--------LIR-NANIIAVIQQGKI 599 (1236)
Q Consensus 557 ~--------~~~~i~~~l~~~~~--~~t~i~itH---------~--~~--------~~~-~ad~i~vl~~G~i 599 (1236)
. ....+.+.|+.+.+ +.++|+++| + +. .+. .||.|++|..++.
T Consensus 329 ~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 329 GRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 1 22456666666643 789999999 1 32 344 4999999987654
No 304
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.59 E-value=6.1e-09 Score=117.27 Aligned_cols=73 Identities=19% Similarity=0.276 Sum_probs=44.4
Q ss_pred EEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEE---CCeecccCChHHHhcceEEEcCCCCCCh-----hhHHH
Q 040099 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITL---DGVEIQKLQVKWLRQQMGVVSQEPVLFS-----DTIRA 1105 (1236)
Q Consensus 1034 ~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~i---dG~di~~i~~~~lR~~i~~V~Qdp~LF~-----gTIre 1105 (1236)
+++.+|++++|+|+||+|||||+++|.|...|..|+|.+ +|.++.... +.++..+++|+|.|-++. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 356789999999999999999999999999999999999 888876532 222323899999997654 477 8
Q ss_pred HHH
Q 040099 1106 NIA 1108 (1236)
Q Consensus 1106 NL~ 1108 (1236)
||.
T Consensus 246 ~l~ 248 (307)
T 1t9h_A 246 ELG 248 (307)
T ss_dssp HHG
T ss_pred HHH
Confidence 883
No 305
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.56 E-value=3.4e-08 Score=118.66 Aligned_cols=172 Identities=10% Similarity=0.179 Sum_probs=106.1
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCc-EEEECCeecccCChHHHhcce-----EEEcCCCCCCh
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG-HITLDGVEIQKLQVKWLRQQM-----GVVSQEPVLFS 1100 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G-~I~idG~di~~i~~~~lR~~i-----~~V~Qdp~LF~ 1100 (1236)
+.|++++.-+++|+.+.|.||+|+|||||+..+.+...+..| .+.+-+. +.+...+++++ ++-+|+ +.+
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~---E~s~~~l~~r~~~~~~~~~~~~--l~~ 265 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL---EMSAQQLVMRMLCAEGNINAQN--LRT 265 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES---SSCHHHHHHHHHHHHHTCCHHH--HHT
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC---CCCHHHHHHHHHHHHcCCCHHH--Hhc
Confidence 468999988999999999999999999999999887765445 5665443 34445555443 222211 111
Q ss_pred hhHHH-HHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHc--cCCCEEEEecCCCCCCHH--------H
Q 040099 1101 DTIRA-NIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIV--KEPKILLLDEATSALDIE--------S 1169 (1236)
Q Consensus 1101 gTIre-NL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALl--r~p~ILlLDEaTSaLD~~--------t 1169 (1236)
|.+.+ ...+...+.+.+...| -.+.. ...+|.+|.+ +.+|++. .+|+++|+|+++.-.+.. .
T Consensus 266 g~l~~~~~~~~~~a~~~l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~ 338 (454)
T 2r6a_A 266 GKLTPEDWGKLTMAMGSLSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQE 338 (454)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHH
T ss_pred CCCCHHHHHHHHHHHHHHhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHH
Confidence 11110 0011111111111111 11222 2468999876 6777776 579999999999977432 1
Q ss_pred HHHHHHHHHHHc--CCCeEEEEec-----------Cch--------hhh-hcCEEEEEeCCEE
Q 040099 1170 ERVVQDALDQVM--VDRTTLVVAH-----------RLS--------TIK-NAHLIAVVSQGMI 1210 (1236)
Q Consensus 1170 e~~I~~~L~~~~--~~~TvI~IaH-----------Rl~--------ti~-~aD~I~Vl~~G~I 1210 (1236)
-..+.+.|+.+. .++|||+++| |+. .+. .||.|++|..++.
T Consensus 339 i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 339 VSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 244555565543 3789999999 132 343 5999999987654
No 306
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.56 E-value=1.9e-09 Score=116.14 Aligned_cols=75 Identities=13% Similarity=0.157 Sum_probs=52.2
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCC--------
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ-------- 1081 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~-------- 1081 (1236)
.++++|+...|. . +|++++ +.++|+||||||||||+++|.+++.|++|+|.++|.++...+
T Consensus 9 ~l~l~~~~~~~~--------~--~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA--------R--TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE--------E--EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC--------C--EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 477888765442 1 566667 899999999999999999999999999999999999984332
Q ss_pred hHHHhcceEEEcCC
Q 040099 1082 VKWLRQQMGVVSQE 1095 (1236)
Q Consensus 1082 ~~~lR~~i~~V~Qd 1095 (1236)
...+|..+++|+|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 23357789999995
No 307
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.56 E-value=2.6e-10 Score=126.19 Aligned_cols=139 Identities=19% Similarity=0.231 Sum_probs=95.5
Q ss_pred EEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEE
Q 040099 1012 QFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGV 1091 (1236)
Q Consensus 1012 ~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1091 (1236)
+++++...|.. ..+++++++++++| ++|+||+|||||||+++|.+... .|.|.++|.++.+......++++..
T Consensus 27 ~l~~l~~~~~~---~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 99 (254)
T 1ixz_A 27 ELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 99 (254)
T ss_dssp HHHHHHHHHHC---HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHH
T ss_pred HHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHH
Confidence 45566666642 24799999999999 99999999999999999999885 7999999988766555555667777
Q ss_pred EcCCCC-CC-hhhHHHHHHHHhhhchH-----HHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040099 1092 VSQEPV-LF-SDTIRANIAEMANANGF-----ISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATS 1163 (1236)
Q Consensus 1092 V~Qdp~-LF-~gTIreNL~~~a~~~~~-----i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTS 1163 (1236)
++|++. .+ .-++.||++........ -....+-.+..+ ..|||||+||..+++|+..+|++ ||++.-
T Consensus 100 ~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll----~~l~g~~~~~~~i~~a~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 100 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL----VEMDGFEKDTAIVVMAATNRPDI--LDPALL 172 (254)
T ss_dssp HHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHH----HHHHTCCTTCCEEEEEEESCGGG--SCGGGG
T ss_pred HHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHH----HHHhCCCCCCCEEEEEccCCchh--CCHHHc
Confidence 888753 22 23555666432211000 000000011112 24789999999999999999987 788764
No 308
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.54 E-value=5.9e-09 Score=109.55 Aligned_cols=83 Identities=22% Similarity=0.306 Sum_probs=66.4
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC-------------CCCcEEEECCeecCCCCHHHHhcceEEEccCCCCC
Q 040099 407 CLLIPNGTIAALVGTSGSGKSTVISLIQRFYD-------------PQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLL 473 (1236)
Q Consensus 407 ~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~ 473 (1236)
|+...+|++++|+||||||||||++.|.+.++ |..|+ +||++...++.+.+++.+ .|+.+++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle 87 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLE 87 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhh
Confidence 34455899999999999999999999999886 77888 799998888888888765 6889999
Q ss_pred chhHHHHHhcCCCCCCHHHHHHHHH
Q 040099 474 SSSIRDNIAYGKTHATKEEIQAAAE 498 (1236)
Q Consensus 474 ~~ti~~ni~~g~~~~~~~~~~~~~~ 498 (1236)
.+++.+| .||.+ .+.+.++++
T Consensus 88 ~~~~~~n-~YGt~---~~~v~~~l~ 108 (197)
T 3ney_A 88 FGSYQGN-MFGTK---FETVHQIHK 108 (197)
T ss_dssp EEEETTE-EEEEE---HHHHHHHHH
T ss_pred hhhhhce-ecccc---hhhHHHHHh
Confidence 9999999 58854 344554443
No 309
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.54 E-value=2.9e-08 Score=123.54 Aligned_cols=144 Identities=17% Similarity=0.203 Sum_probs=100.3
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCC-cEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHH
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS-GHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRA 1105 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~-G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIre 1105 (1236)
.+++++++.+++|+.+.|+||+|+|||||+++|.++.++.. |.+.+++.+.... ...++++||... ..+.+
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~---~~~~e 119 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQG---RRIVE 119 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHH---HHHHH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchH---HHHHH
Confidence 48999999999999999999999999999999999999887 8899988766543 456888887541 11111
Q ss_pred HHHHHhhh-----------------------------chHHHhhhhchhhhhc------CCCCCCChhHHHHHHHHHHHc
Q 040099 1106 NIAEMANA-----------------------------NGFISGLQEGYDTLVG------ERGVQLSGGQKQRVAIARAIV 1150 (1236)
Q Consensus 1106 NL~~~a~~-----------------------------~~~i~~lp~Gldt~vg------e~G~~LSGGQrQRlaLARALl 1150 (1236)
-....+.. ..++......+...+| .....+|+|++|++..++...
T Consensus 120 ~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~~~i~~g~~~~ 199 (604)
T 3k1j_A 120 KYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAHERVEPGMIHR 199 (604)
T ss_dssp HHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGGGGEECCHHHH
T ss_pred HHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCccccccccccCceeee
Confidence 11100000 0000000000111122 112359999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHH
Q 040099 1151 KEPKILLLDEATSALDIESERVVQDALDQ 1179 (1236)
Q Consensus 1151 r~p~ILlLDEaTSaLD~~te~~I~~~L~~ 1179 (1236)
.++.+|+|||... |++.....+.++|++
T Consensus 200 a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 200 AHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp TTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999998 899988888888874
No 310
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.50 E-value=2.9e-08 Score=105.26 Aligned_cols=134 Identities=22% Similarity=0.279 Sum_probs=75.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccc-----CCC------CcEEEECCeecc----cC-ChHHHhcceEEEcCCCC--C--Ch
Q 040099 1041 TIALVGESGSGKSTVISLLQRFY-----DPS------SGHITLDGVEIQ----KL-QVKWLRQQMGVVSQEPV--L--FS 1100 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~-----~~~------~G~I~idG~di~----~i-~~~~lR~~i~~V~Qdp~--L--F~ 1100 (1236)
+++|+|++|||||||++.|.+.. .|+ .|+|.++|.++. +. ..+..|+......|++. + |+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 68999999999999999999974 233 678999997652 22 22334433333334432 1 32
Q ss_pred hhH---HHHHHHHhhhchHHHhh-hhchh-hhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040099 1101 DTI---RANIAEMANANGFISGL-QEGYD-TLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQD 1175 (1236)
Q Consensus 1101 gTI---reNL~~~a~~~~~i~~l-p~Gld-t~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~ 1175 (1236)
.+- .+++.... ..+... +.+.. -.++..- .|..-.......||++.++|+++++| ||++|...-..+.+
T Consensus 87 ~~~~~s~~~~~~~~---~~~~~~~~~~~~i~~v~nK~-Dl~~~~~~~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~ 160 (199)
T 2f9l_A 87 IAKHLTYENVERWL---KELRDHADSNIVIMLVGNKS-DLRHLRAVPTDEARAFAEKNNLSFIE--TSALDSTNVEEAFK 160 (199)
T ss_dssp TTCHHHHHTHHHHH---HHHHHHSCTTCEEEEEEECT-TCGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHH
T ss_pred CcCHHHHHHHHHHH---HHHHHhcCCCCeEEEEEECc-ccccccCcCHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHH
Confidence 221 23332111 001110 00000 0111110 11110111235689999999999999 99999999888888
Q ss_pred HHHHH
Q 040099 1176 ALDQV 1180 (1236)
Q Consensus 1176 ~L~~~ 1180 (1236)
.|.+.
T Consensus 161 ~l~~~ 165 (199)
T 2f9l_A 161 NILTE 165 (199)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 311
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.47 E-value=2.2e-08 Score=105.24 Aligned_cols=69 Identities=25% Similarity=0.349 Sum_probs=59.7
Q ss_pred EEecCCCEEEEEcCCCCChHHHHHHHhcccC-------------CCCcEEEECCeecccCChHHHhcceEEEcCCCCCCh
Q 040099 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYD-------------PSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFS 1100 (1236)
Q Consensus 1034 ~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~-------------~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~ 1100 (1236)
+...+|+.++|+||||||||||++.|.+.++ |..|+ +||+|..-++.+.+++.+ .|+.+++.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~ 88 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEF 88 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEE
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhh
Confidence 3445899999999999999999999999986 67887 899999999999999875 69999998
Q ss_pred hhHHHHH
Q 040099 1101 DTIRANI 1107 (1236)
Q Consensus 1101 gTIreNL 1107 (1236)
+++.+|.
T Consensus 89 ~~~~~n~ 95 (197)
T 3ney_A 89 GSYQGNM 95 (197)
T ss_dssp EEETTEE
T ss_pred hhhhcee
Confidence 8888774
No 312
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.46 E-value=1.3e-08 Score=106.91 Aligned_cols=116 Identities=17% Similarity=0.312 Sum_probs=53.8
Q ss_pred CCEEEEEcCCCCChHHHHHHHhcccC-------------CCCcEEEECCeecccCChHHHhcceEEEcCCCCCChh----
Q 040099 1039 GKTIALVGESGSGKSTVISLLQRFYD-------------PSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSD---- 1101 (1236)
Q Consensus 1039 Ge~vaIVG~SGSGKSTL~~lL~r~~~-------------~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~g---- 1101 (1236)
|+.++|+||||||||||+++|.++++ |..|++ +|+++...+.+.+++.+ .|+.+++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEec
Confidence 67899999999999999999999998 888886 89888777777666543 244433322
Q ss_pred --------hHHHHHHHH---------hhhchHHHh--------------hhhchhhhhcCCCCCCChhHHHHHHHHHHHc
Q 040099 1102 --------TIRANIAEM---------ANANGFISG--------------LQEGYDTLVGERGVQLSGGQKQRVAIARAIV 1150 (1236)
Q Consensus 1102 --------TIreNL~~~---------a~~~~~i~~--------------lp~Gldt~vge~G~~LSGGQrQRlaLARALl 1150 (1236)
++.+-+.+- .++. .+.. -++-+...+.++|..-....+||++-|+.-+
T Consensus 76 ~~yg~~~~~i~~~l~~g~~~il~~~~~g~~-~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~~~~ 154 (186)
T 3a00_A 76 NYYGSTVASVKQVSKSGKTCILDIDMQGVK-SVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAEL 154 (186)
T ss_dssp EEEEEEHHHHHHHHHTTCEEEEECCHHHHH-HHHTCGGGCCEEEEEECSCC-----------------------------
T ss_pred eeccCcHHHHHHHHHcCCeEEEEEcHHHHH-HHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 222222100 0000 0111 1134555566677666677788888888765
Q ss_pred -----cCCCEEEEec
Q 040099 1151 -----KEPKILLLDE 1160 (1236)
Q Consensus 1151 -----r~p~ILlLDE 1160 (1236)
+.++.+|..+
T Consensus 155 ~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 155 AYAETGAHDKVIVND 169 (186)
T ss_dssp ----CCCCSEEEECS
T ss_pred HhhcccCCcEEEECc
Confidence 4566666654
No 313
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.45 E-value=4e-08 Score=123.22 Aligned_cols=133 Identities=19% Similarity=0.147 Sum_probs=96.7
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC--CCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhc-
Q 040099 407 CLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP--QAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAY- 483 (1236)
Q Consensus 407 ~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~--~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~- 483 (1236)
|+++++|..++|+|++|+|||||++.|++...+ ..|+| .+|.++.+....+.++.+++.+|.+.++..+++.||.-
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 457889999999999999999999999987665 78988 78889999999888999999999988877766666542
Q ss_pred -CCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHH
Q 040099 484 -GKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMV 562 (1236)
Q Consensus 484 -g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i 562 (1236)
|..+. ..++ .+-.-..++.++++| |+.++|+.++..+
T Consensus 82 pG~~~f-~~~~----------------------------------------~~~l~~ad~~ilVvD-~~~g~~~qt~~~~ 119 (665)
T 2dy1_A 82 PGYGDF-VGEI----------------------------------------RGALEAADAALVAVS-AEAGVQVGTERAW 119 (665)
T ss_dssp CCSGGG-HHHH----------------------------------------HHHHHHCSEEEEEEE-TTTCSCHHHHHHH
T ss_pred CCccch-HHHH----------------------------------------HHHHhhcCcEEEEEc-CCcccchhHHHHH
Confidence 11110 0111 111113566788888 9999999988655
Q ss_pred HHHHHHHccCceEEEEecCchhH
Q 040099 563 QEALDRVMINRTTVIVSHRLSLI 585 (1236)
Q Consensus 563 ~~~l~~~~~~~t~i~itH~~~~~ 585 (1236)
..+. + .+.++|++.|+++..
T Consensus 120 ~~~~-~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 120 TVAE-R--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHH-H--TTCCEEEEEECGGGC
T ss_pred HHHH-H--ccCCEEEEecCCchh
Confidence 4443 2 367888999988753
No 314
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.42 E-value=2.5e-09 Score=124.05 Aligned_cols=137 Identities=13% Similarity=0.161 Sum_probs=86.7
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHH
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDN 480 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n 480 (1236)
.+|+++++++++|+.++|+||+|||||||+++|+|.+ +|++..-+ . +.+.++..+++++|...++ .|+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~--~---~~~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN--L---PLDRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS--S---CTTTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe--c---cchhHHHHHHHhcchhHHH----HHH
Confidence 5899999999999999999999999999999999954 68776511 1 1112233478889887542 222
Q ss_pred HhcCCC---CC-CHHHHHHHHHHhccHHHHHh---------CCCCcc-----ccccCCCCCCChHHHHHHHHHHHhcCCC
Q 040099 481 IAYGKT---HA-TKEEIQAAAEAANASHFIKN---------LPQGLD-----TNVGEHGIQLSGGQKQRVAIARAMIKDP 542 (1236)
Q Consensus 481 i~~g~~---~~-~~~~~~~~~~~~~~~~~i~~---------l~~g~~-----t~~g~~g~~LSgGqkqRiaiARal~~~p 542 (1236)
+..... .. ..+.+. ....+.+.+.. -|+-++ -.+..+...+++|.+||++.+.+++.+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 222211 00 000010 01122222210 000000 1234455679999999999999999999
Q ss_pred CEEE-EeCcCC
Q 040099 543 RILL-LDEATS 552 (1236)
Q Consensus 543 ~ili-lDE~ts 552 (1236)
++++ ||+|+.
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9988 999997
No 315
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.41 E-value=2.7e-08 Score=103.81 Aligned_cols=80 Identities=19% Similarity=0.176 Sum_probs=57.3
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCcEEE----------ECCeecCCCCHHHHhcceEEEccCCCCCchhHHH
Q 040099 411 PNGTIAALVGTSGSGKSTVISLIQRFYDP-QAGEVL----------IDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRD 479 (1236)
Q Consensus 411 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-~~G~i~----------~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 479 (1236)
.+|++++|+||||||||||+++|.+++++ ..|.|. ++|.++...+...+++. +.|+.+++..++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 36999999999999999999999999863 445543 35666655666666653 56777888888888
Q ss_pred HHhcCCCCCCHHHHHHHH
Q 040099 480 NIAYGKTHATKEEIQAAA 497 (1236)
Q Consensus 480 ni~~g~~~~~~~~~~~~~ 497 (1236)
| .+|.+ .+.+.+++
T Consensus 80 n-~yg~~---~~~i~~~l 93 (180)
T 1kgd_A 80 A-MYGTK---LETIRKIH 93 (180)
T ss_dssp E-EEEEE---HHHHHHHH
T ss_pred c-ccccc---HHHHHHHH
Confidence 8 56643 34444444
No 316
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.39 E-value=2.6e-08 Score=103.95 Aligned_cols=67 Identities=18% Similarity=0.143 Sum_probs=51.8
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhcccCC-CCcEEE----------ECCeecccCChHHHhcceEEEcCCCCCChhhHHH
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQRFYDP-SSGHIT----------LDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRA 1105 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~-~~G~I~----------idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIre 1105 (1236)
.+|+.++|+||||||||||+++|.+++++ ..|.|. +||+++..++.+.+++. ++|+.+++.+++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 47999999999999999999999999874 445553 46777777777777763 56777777777666
Q ss_pred H
Q 040099 1106 N 1106 (1236)
Q Consensus 1106 N 1106 (1236)
|
T Consensus 80 n 80 (180)
T 1kgd_A 80 A 80 (180)
T ss_dssp E
T ss_pred c
Confidence 5
No 317
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.38 E-value=3.5e-08 Score=104.84 Aligned_cols=116 Identities=22% Similarity=0.322 Sum_probs=73.3
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEE--EECCeecccCChHHHhcceEEEcCCCCCChhhHH
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI--TLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIR 1104 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I--~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIr 1104 (1236)
.+.+..++..++|+.++|+|+|||||||++++|.+.+. ..|.+ ++||.++.. .+++.+++.+|+ ..
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~~----~~~~~~~~~~~~-------~~ 80 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVRH----GLNRDLSFKAED-------RA 80 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHTT----TTTTTCCSSHHH-------HH
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhhh----HhhcccCcChHH-------HH
Confidence 46788899999999999999999999999999999987 77988 999877753 233344444333 23
Q ss_pred HHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCE--EEEecC
Q 040099 1105 ANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKI--LLLDEA 1161 (1236)
Q Consensus 1105 eNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~I--LlLDEa 1161 (1236)
+++........... ..|.. .+.. .++..+..-..+|+++++.++ +.||-|
T Consensus 81 ~~~~~~~~~~~~~~--~~~~~-vi~~----~~~~~~~~r~~~~~~~~~~~~~~v~L~a~ 132 (200)
T 3uie_A 81 ENIRRVGEVAKLFA--DAGII-CIAS----LISPYRTDRDACRSLLPEGDFVEVFMDVP 132 (200)
T ss_dssp HHHHHHHHHHHHHH--HTTCE-EEEE----CCCCCHHHHHHHHHTSCTTSEEEEEECCC
T ss_pred HHHHHHHHHHHHHH--hCCce-EEEe----cCCchHHHHHHHHHhcCCCCEEEEEEeCC
Confidence 33332222211111 12322 2322 122223334566888887777 667654
No 318
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.37 E-value=4.1e-09 Score=122.26 Aligned_cols=129 Identities=15% Similarity=0.242 Sum_probs=82.7
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChh--h--
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSD--T-- 1102 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~g--T-- 1102 (1236)
.+|+++|+++++|+.++|+||+|||||||+++|.+.+ +|.+..- +. +.+.++..+++++|...+|-. +
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~--~~---~~~~~~~~lg~~~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNV--NL---PLDRLNFELGVAIDQFLVVFEDVKGT 228 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECC--SS---CTTTHHHHHGGGTTCSCEEETTCCCS
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEE--ec---cchhHHHHHHHhcchhHHHHHHHHHH
Confidence 5899999999999999999999999999999999975 6777651 11 112233347788887643211 0
Q ss_pred ---HH-----HHHHHHhhhchHHHhh-hhchhh-------------hhcCCCCCCChhHHHHHHHHHHHccCCCEEE-Ee
Q 040099 1103 ---IR-----ANIAEMANANGFISGL-QEGYDT-------------LVGERGVQLSGGQKQRVAIARAIVKEPKILL-LD 1159 (1236)
Q Consensus 1103 ---Ir-----eNL~~~a~~~~~i~~l-p~Gldt-------------~vge~G~~LSGGQrQRlaLARALlr~p~ILl-LD 1159 (1236)
.| +.+.....+.+.+... +-..+| .+..+-..+++|.+||++.+.+++.+|++++ ||
T Consensus 229 ~~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd 308 (377)
T 1svm_A 229 GGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLE 308 (377)
T ss_dssp TTTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHH
T ss_pred HHHHhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEe
Confidence 00 0000001111111100 000011 2334456789999999999988899999988 99
Q ss_pred cCCC
Q 040099 1160 EATS 1163 (1236)
Q Consensus 1160 EaTS 1163 (1236)
+|+.
T Consensus 309 ~~~~ 312 (377)
T 1svm_A 309 RSEF 312 (377)
T ss_dssp TCTH
T ss_pred CCHH
Confidence 9987
No 319
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.32 E-value=5.5e-07 Score=102.49 Aligned_cols=81 Identities=12% Similarity=0.166 Sum_probs=65.0
Q ss_pred cccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCC----hHHH-----hcceEEE-cCCCC
Q 040099 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ----VKWL-----RQQMGVV-SQEPV 1097 (1236)
Q Consensus 1028 vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~----~~~l-----R~~i~~V-~Qdp~ 1097 (1236)
++++++|++++|+.++|+|++|+||||++..|.+.+.+.+|+|.+.+.|+.... +..+ +..+.++ +|.+.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 357899999999999999999999999999999999999999999998886443 1344 6789999 78765
Q ss_pred CChh-hHHHHHH
Q 040099 1098 LFSD-TIRANIA 1108 (1236)
Q Consensus 1098 LF~g-TIreNL~ 1108 (1236)
.... ++++|+.
T Consensus 174 ~~p~~~~~~~l~ 185 (320)
T 1zu4_A 174 ADPASVVFDAIK 185 (320)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 5544 5666664
No 320
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.31 E-value=8.9e-08 Score=102.21 Aligned_cols=52 Identities=21% Similarity=0.282 Sum_probs=43.9
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCC
Q 040099 408 LLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGK 485 (1236)
Q Consensus 408 ~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~ 485 (1236)
=++++|++++|+|++||||||+++.|.+.++ .+.+++||+.++++ +|+.++.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~~ 67 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETDK 67 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBCT
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhccc
Confidence 3678899999999999999999999999874 37899999988876 5665543
No 321
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.30 E-value=1.9e-07 Score=98.77 Aligned_cols=135 Identities=21% Similarity=0.245 Sum_probs=73.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC-----CCC------CcEEEECCeecC----CCC-HHHHhcceEEEccCCC--C--Cc
Q 040099 415 IAALVGTSGSGKSTVISLIQRFY-----DPQ------AGEVLIDGVNLK----EFQ-LKWIREKIGLVSQEPV--L--LS 474 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~-----~~~------~G~i~~~g~~~~----~~~-~~~~r~~i~~v~Q~~~--l--~~ 474 (1236)
.++|+|++|||||||++.+.|.. .|+ .|+|.++|.++. +.+ .+..+.......|+.. + |+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 68999999999999999999974 243 578999997652 222 1222222222223321 1 11
Q ss_pred hhH---HHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCc
Q 040099 475 SSI---RDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLD-TNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEA 550 (1236)
Q Consensus 475 ~ti---~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ 550 (1236)
.+- .+++. ..+.+..+. .+.+.. -.++.+- .|..-.......||+++.+|+++++|
T Consensus 87 ~~~~~s~~~~~--------~~~~~~~~~---------~~~~~~i~~v~nK~-Dl~~~~~~~~~~a~~l~~~~~~~~~d-- 146 (199)
T 2f9l_A 87 IAKHLTYENVE--------RWLKELRDH---------ADSNIVIMLVGNKS-DLRHLRAVPTDEARAFAEKNNLSFIE-- 146 (199)
T ss_dssp TTCHHHHHTHH--------HHHHHHHHH---------SCTTCEEEEEEECT-TCGGGCCSCHHHHHHHHHHTTCEEEE--
T ss_pred CcCHHHHHHHH--------HHHHHHHHh---------cCCCCeEEEEEECc-ccccccCcCHHHHHHHHHHcCCeEEE--
Confidence 110 11110 011111000 001110 1122211 12111112345689999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 040099 551 TSALDSESGRMVQEALDRV 569 (1236)
Q Consensus 551 ts~lD~~~~~~i~~~l~~~ 569 (1236)
||++|......+.+.|.+.
T Consensus 147 ~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 147 TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp CCTTTCTTHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHH
Confidence 9999999888888777553
No 322
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.28 E-value=1e-06 Score=105.18 Aligned_cols=113 Identities=22% Similarity=0.362 Sum_probs=76.7
Q ss_pred cccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHH
Q 040099 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI 1107 (1236)
Q Consensus 1028 vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL 1107 (1236)
.++++++.+++| +.|+||+|+|||||++.+.+-.... -+.++
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~--f~~is---------------------------------- 81 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP--FFHIS---------------------------------- 81 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC--EEEEE----------------------------------
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC--eeeCC----------------------------------
Confidence 678888888888 8999999999999999999843110 00010
Q ss_pred HHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCC----------CCCCHHHHHHHHHHH
Q 040099 1108 AEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEAT----------SALDIESERVVQDAL 1177 (1236)
Q Consensus 1108 ~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaT----------SaLD~~te~~I~~~L 1177 (1236)
..++... .+| .|++++|-.+++|....|.||++||+. ++.|.+.++.+.+.+
T Consensus 82 -----~~~~~~~-------~~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL 143 (476)
T 2ce7_A 82 -----GSDFVEL-------FVG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLL 143 (476)
T ss_dssp -----GGGTTTC-------CTT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHH
T ss_pred -----HHHHHHH-------Hhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHH
Confidence 1111110 011 267889999999999999999999994 467777777666666
Q ss_pred HHH-----cCCCeEEEEecCchhh
Q 040099 1178 DQV-----MVDRTTLVVAHRLSTI 1196 (1236)
Q Consensus 1178 ~~~-----~~~~TvI~IaHRl~ti 1196 (1236)
... ..+..+|..||+.+.+
T Consensus 144 ~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 144 VEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHHHHSCGGGTEEEEEEESCGGGS
T ss_pred HHHhccCCCCCEEEEEecCChhhh
Confidence 543 1345788899998654
No 323
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.23 E-value=1.3e-07 Score=103.70 Aligned_cols=52 Identities=29% Similarity=0.356 Sum_probs=36.0
Q ss_pred cEEEEeE-EEECCCCCCCccccceeEEecC---CcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 384 DIELKDV-NFSYPARPDEQILNGFCLLIPN---GTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 384 ~i~~~~v-~f~y~~~~~~~~l~~i~~~i~~---g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
.++++|+ +|+|. .+.++|+|+||+|++ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~--~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD--EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec--CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 99993 235799999999999 9999999999999999999999855
No 324
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.22 E-value=1.4e-06 Score=104.11 Aligned_cols=114 Identities=22% Similarity=0.314 Sum_probs=75.5
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHH
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDN 480 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n 480 (1236)
..++++++.+++| +.|+||+|+|||||++.+.+.... .+-++. .
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~----------------------~f~~is---------~--- 82 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV----------------------PFFHIS---------G--- 82 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC----------------------CEEEEE---------G---
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC----------------------CeeeCC---------H---
Confidence 4677888888888 889999999999999999984310 011110 0
Q ss_pred HhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcC---------
Q 040099 481 IAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEAT--------- 551 (1236)
Q Consensus 481 i~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~t--------- 551 (1236)
.++...+ +| .|++++|-.+++|....|.||++||+.
T Consensus 83 ----------------------~~~~~~~-------~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~ 127 (476)
T 2ce7_A 83 ----------------------SDFVELF-------VG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAG 127 (476)
T ss_dssp ----------------------GGTTTCC-------TT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC----
T ss_pred ----------------------HHHHHHH-------hc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccc
Confidence 0000000 11 278899999999999999999999994
Q ss_pred -CCCCHHHHHHHHHHHHHHc-----cCceEEEEecCchhH
Q 040099 552 -SALDSESGRMVQEALDRVM-----INRTTVIVSHRLSLI 585 (1236)
Q Consensus 552 -s~lD~~~~~~i~~~l~~~~-----~~~t~i~itH~~~~~ 585 (1236)
++.|.+.++.+.+.+..+. .+..+|..||+++.+
T Consensus 128 ~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 128 LGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp -----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred cCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 3566666665655555442 345778889998654
No 325
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.22 E-value=8.2e-07 Score=103.34 Aligned_cols=165 Identities=21% Similarity=0.278 Sum_probs=88.9
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHhc--ccCCCCcEEEECCeecccCChHHHhcceEEEcCCCC-CCh--h
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQR--FYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPV-LFS--D 1101 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r--~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~-LF~--g 1101 (1236)
.+|++++++++ .|+|||++|||||||++.|.| +.++.+|.++-....+.-.+...-.+..+..++.+. .|. .
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFA 101 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHH
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHH
Confidence 47999999999 999999999999999999999 778888877655544322111111123344443331 111 2
Q ss_pred hHHHHHHHHhh-hch----HHH-------hhhhchh-hhhcCCC-------CCCChhHHHHHHHHHHHccCCCEEEEecC
Q 040099 1102 TIRANIAEMAN-ANG----FIS-------GLQEGYD-TLVGERG-------VQLSGGQKQRVAIARAIVKEPKILLLDEA 1161 (1236)
Q Consensus 1102 TIreNL~~~a~-~~~----~i~-------~lp~Gld-t~vge~G-------~~LSGGQrQRlaLARALlr~p~ILlLDEa 1161 (1236)
.+++.+.+... ..+ +-. .-|++.+ +.++-.| .+-++.++|+..++++.+++|+++||.-.
T Consensus 102 ~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~ 181 (360)
T 3t34_A 102 AVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAIS 181 (360)
T ss_dssp HHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEee
Confidence 34444421111 000 000 0011100 1111112 24678899999999999999998888754
Q ss_pred CCCCCHHHHHHHHHHHHHHcC-C-CeEEEEecCchhh
Q 040099 1162 TSALDIESERVVQDALDQVMV-D-RTTLVVAHRLSTI 1196 (1236)
Q Consensus 1162 TSaLD~~te~~I~~~L~~~~~-~-~TvI~IaHRl~ti 1196 (1236)
.++.|..+.. ..+.++.... + +|++++++ .+.+
T Consensus 182 ~~~~~~~~~~-~~~l~~~~~~~~~~~i~V~nK-~Dl~ 216 (360)
T 3t34_A 182 PANQDLATSD-AIKISREVDPSGDRTFGVLTK-IDLM 216 (360)
T ss_dssp ETTSCGGGCH-HHHHHHHSCTTCTTEEEEEEC-GGGC
T ss_pred cccCCcCCHH-HHHHHHHhcccCCCEEEEEeC-CccC
Confidence 4555655433 3344444332 3 46665554 4443
No 326
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.21 E-value=2e-07 Score=98.99 Aligned_cols=61 Identities=15% Similarity=0.099 Sum_probs=43.7
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCC
Q 040099 407 CLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVL 472 (1236)
Q Consensus 407 ~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l 472 (1236)
.++.++|++++|+|||||||||++++|.+.+ |.+.++|.++... ....+..+++++|++.+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~ 83 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDR 83 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCccc
Confidence 3667899999999999999999999999987 8999998776421 11122356888887543
No 327
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.21 E-value=1.1e-06 Score=102.36 Aligned_cols=46 Identities=30% Similarity=0.359 Sum_probs=36.0
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHc--CCCCCCcEEEECCe
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQR--FYDPQAGEVLIDGV 449 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~--~~~~~~G~i~~~g~ 449 (1236)
.+|++++++++ .+++||++|||||||++.|.| +.++.+|.+.-.+.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~ 72 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPL 72 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCE
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcce
Confidence 58999999999 999999999999999999999 77888887654443
No 328
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.20 E-value=2.7e-07 Score=97.93 Aligned_cols=72 Identities=18% Similarity=0.141 Sum_probs=50.4
Q ss_pred ceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChh-hHHHHH
Q 040099 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSD-TIRANI 1107 (1236)
Q Consensus 1031 ~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNL 1107 (1236)
+-.++-++|+.++|+|++||||||++++|.+.+ |.+.+||.++..- ....+...++++|++.++.. ++.+|+
T Consensus 21 ~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~ 93 (200)
T 4eun_A 21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDRWPWLRSLAEW 93 (200)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcccccHHHHHHHH
Confidence 334677899999999999999999999999987 8999999887531 11223357899998765543 555655
No 329
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.18 E-value=6.6e-08 Score=102.67 Aligned_cols=60 Identities=27% Similarity=0.447 Sum_probs=46.8
Q ss_pred eEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEE--EECCeecC
Q 040099 389 DVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV--LIDGVNLK 452 (1236)
Q Consensus 389 ~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i--~~~g~~~~ 452 (1236)
|++..+. ...+.+..++..++|++++|+|||||||||++++|++.+. ..|.+ ++||.++.
T Consensus 4 ~~~~~~~---~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 4 NIKWHEC---SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp ------C---CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCccccc---ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 4554442 3457888999999999999999999999999999999987 78988 88886654
No 330
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.18 E-value=1.7e-07 Score=102.80 Aligned_cols=52 Identities=23% Similarity=0.393 Sum_probs=35.7
Q ss_pred cEEEeEE-EEECCCCCCcccccceeEEecC---CCEEEEEcCCCCChHHHHHHHhccc
Q 040099 1010 EVQFLRV-SFKYPTRPHIEVFRDLCLTIPP---GKTIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1010 ~I~f~~V-sf~Y~~~~~~~vL~~is~~I~~---Ge~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
.++++|| +++|.+ ..++|+|+||+|++ |++++|+|++||||||+.++|.+.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 34699999999999 9999999999999999999999855
No 331
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.17 E-value=1e-06 Score=102.21 Aligned_cols=142 Identities=11% Similarity=0.227 Sum_probs=84.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-----------CCCcEEEECCeecCCCCHHHHhcceEEEccCCCC----CchhHHH
Q 040099 415 IAALVGTSGSGKSTVISLIQRFYD-----------PQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVL----LSSSIRD 479 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~~-----------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l----~~~ti~~ 479 (1236)
+++|+|++|||||||++.|+|... |+.|.|.++|.++. +....|++.|.|.- |..| .+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~t-l~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVT-LS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHH-HH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHH-HH
Confidence 499999999999999999999765 67799999997653 22346666664431 2222 22
Q ss_pred HHhcCC-----CCCC--HHHHHHHHHHhccHHHHHhCC-CCc-cccccCCCCCCChHHHHHHHHH----HHh-cCCCCEE
Q 040099 480 NIAYGK-----THAT--KEEIQAAAEAANASHFIKNLP-QGL-DTNVGEHGIQLSGGQKQRVAIA----RAM-IKDPRIL 545 (1236)
Q Consensus 480 ni~~g~-----~~~~--~~~~~~~~~~~~~~~~i~~l~-~g~-~t~~g~~g~~LSgGqkqRiaiA----Ral-~~~p~il 545 (1236)
.+.... -+.+ ..+..+..+. ..+.+..+. .+. --.|+.+...+|+|++||+.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~--~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQS--SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHH--HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE-
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHH--HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE-
Confidence 222110 0111 1011111111 112222220 111 1224555556888899988877 776 555555
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHH
Q 040099 546 LLDEATSALDSESGRMVQEALDRV 569 (1236)
Q Consensus 546 ilDE~ts~lD~~~~~~i~~~l~~~ 569 (1236)
+|+|++|......+.+.|.+.
T Consensus 331 ---~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 331 ---IPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp ---EECBTTTTBSHHHHHHHHHHH
T ss_pred ---EEEECCCCcCHHHHHHHHHHH
Confidence 899999999888888888665
No 332
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.17 E-value=3.7e-08 Score=118.38 Aligned_cols=139 Identities=19% Similarity=0.259 Sum_probs=96.2
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEE
Q 040099 386 ELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGL 465 (1236)
Q Consensus 386 ~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 465 (1236)
+++++...|. +..+++++++++++| +.|+||+|+|||||++.|.+... .|.+.++|.++.+......++++..
T Consensus 42 ~l~~lv~~l~---~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~ 114 (499)
T 2dhr_A 42 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 114 (499)
T ss_dssp HHHHHHHHHH---CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHH
T ss_pred HHHHHHHHhh---chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHH
Confidence 3445544453 235899999999999 99999999999999999999875 7899999988765544444566778
Q ss_pred EccCCC-CCch-hHHHHH-hcCCCCC-----CHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 040099 466 VSQEPV-LLSS-SIRDNI-AYGKTHA-----TKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARA 537 (1236)
Q Consensus 466 v~Q~~~-l~~~-ti~~ni-~~g~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARa 537 (1236)
++|+.. ..+. .+.|+| .++.... ..++..+.+. .++. .|||||+|+..+++|
T Consensus 115 lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~-----~LL~---------------~Ldg~~~~~~viviA 174 (499)
T 2dhr_A 115 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN-----QLLV---------------EMDGFEKDTAIVVMA 174 (499)
T ss_dssp HTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHH-----HHHH---------------HGGGCCSSCCCEEEE
T ss_pred HHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHH-----HHHH---------------HhcccccCccEEEEE
Confidence 888764 2322 556676 3432211 1222222211 1221 378999999999999
Q ss_pred hcCCCCEEEEeCcCCC
Q 040099 538 MIKDPRILLLDEATSA 553 (1236)
Q Consensus 538 l~~~p~ililDE~ts~ 553 (1236)
...+|++ ||||.-.
T Consensus 175 atn~p~~--LD~aLlr 188 (499)
T 2dhr_A 175 ATNRPDI--LDPALLR 188 (499)
T ss_dssp CCSCGGG--SCTTTSS
T ss_pred ecCChhh--cCccccc
Confidence 9999987 8998753
No 333
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.17 E-value=1.5e-07 Score=100.58 Aligned_cols=71 Identities=24% Similarity=0.258 Sum_probs=45.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCcEEE----------ECCeecCCCCHHHHhcceEEEccCCCCCchhHHH
Q 040099 411 PNGTIAALVGTSGSGKSTVISLIQRFYDP-QAGEVL----------IDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRD 479 (1236)
Q Consensus 411 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-~~G~i~----------~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 479 (1236)
++|++++|+||||||||||++.|.+.++| ..+.+. .+|.+....+...+++.+ .|+.++...++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 68999999999999999999999999976 333332 234343334444444432 3445555555555
Q ss_pred HHhcCC
Q 040099 480 NIAYGK 485 (1236)
Q Consensus 480 ni~~g~ 485 (1236)
| .||.
T Consensus 83 ~-~yg~ 87 (208)
T 3tau_A 83 N-YYGT 87 (208)
T ss_dssp E-EEEE
T ss_pred c-cCCC
Confidence 5 3443
No 334
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.17 E-value=1.3e-06 Score=101.16 Aligned_cols=130 Identities=16% Similarity=0.277 Sum_probs=77.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC-----------CCCcEEEECCeecccCChHHHhcceEEEcCCCCC----ChhhHHH
Q 040099 1041 TIALVGESGSGKSTVISLLQRFYD-----------PSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVL----FSDTIRA 1105 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~~-----------~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~L----F~gTIre 1105 (1236)
+|+|||++|||||||++.|.+... |..|.|.++|.++.-+ ...|++.|.|.- |..|+ +
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~------DT~G~i~~lp~~lve~f~~tl-~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLV------DTVGFIRGIPPQIVDAFFVTL-S 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEE------ECCCBCSSCCGGGHHHHHHHH-H
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEE------eCCCchhcCCHHHHHHHHHHH-H
Confidence 399999999999999999999765 6779999999765322 234555543321 11111 1
Q ss_pred HHH--------------------HHhhhchHHHhhh-hchh-hhhcCCCCCCChhHHHHHHHH----HHH-ccCCCEEEE
Q 040099 1106 NIA--------------------EMANANGFISGLQ-EGYD-TLVGERGVQLSGGQKQRVAIA----RAI-VKEPKILLL 1158 (1236)
Q Consensus 1106 NL~--------------------~~a~~~~~i~~lp-~Gld-t~vge~G~~LSGGQrQRlaLA----RAL-lr~p~ILlL 1158 (1236)
.+. ......+.+..+. .+.. -.|+.+...+|+|++||+.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~--- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV--- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE---
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE---
Confidence 110 0000011111110 0000 012233345788899988877 666 545555
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHc
Q 040099 1159 DEATSALDIESERVVQDALDQVM 1181 (1236)
Q Consensus 1159 DEaTSaLD~~te~~I~~~L~~~~ 1181 (1236)
+|||++|.+.-..+.+.|.+..
T Consensus 331 -~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 331 -IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp -EECBTTTTBSHHHHHHHHHHHH
T ss_pred -EEEECCCCcCHHHHHHHHHHHh
Confidence 8999999999999988887653
No 335
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.15 E-value=6.5e-07 Score=94.88 Aligned_cols=45 Identities=20% Similarity=0.093 Sum_probs=25.1
Q ss_pred ECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhccc
Q 040099 1019 KYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1019 ~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
+||+.+..++++||||++++|++++|+|++||||||+.+.|.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 576666778999999999999999999999999999999999876
No 336
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.15 E-value=8.4e-08 Score=116.70 Aligned_cols=72 Identities=26% Similarity=0.294 Sum_probs=54.4
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCc-EEE-ECCeecCC-------CCH---HHHhcceEEEccCCCCCch
Q 040099 408 LLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG-EVL-IDGVNLKE-------FQL---KWIREKIGLVSQEPVLLSS 475 (1236)
Q Consensus 408 ~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G-~i~-~~g~~~~~-------~~~---~~~r~~i~~v~Q~~~l~~~ 475 (1236)
..+++|++++|+|+||||||||+++|++.+.|++| ++. +||.++.. ++. ...++++++++|+ -
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~-----l 438 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASE-----I 438 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHH-----H
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHH-----H
Confidence 36789999999999999999999999999999987 784 99977632 222 2234568888886 2
Q ss_pred hHHHHHhcC
Q 040099 476 SIRDNIAYG 484 (1236)
Q Consensus 476 ti~~ni~~g 484 (1236)
+..+|+.+.
T Consensus 439 ~~~~~ivi~ 447 (552)
T 3cr8_A 439 TKNRGIAIC 447 (552)
T ss_dssp HHTTCEEEE
T ss_pred HhcCCEEEE
Confidence 455565543
No 337
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.15 E-value=4.9e-07 Score=96.13 Aligned_cols=62 Identities=18% Similarity=0.143 Sum_probs=41.1
Q ss_pred EEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCC
Q 040099 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVL 1098 (1236)
Q Consensus 1034 ~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~L 1098 (1236)
++|++|+.++|+|+|||||||++++|.+++.|..| +.+ +...+... ...+..+++++|++..
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~ 62 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDA 62 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHH
Confidence 47899999999999999999999999999977655 222 22222211 1122347788887643
No 338
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.14 E-value=7.2e-07 Score=101.51 Aligned_cols=72 Identities=21% Similarity=0.196 Sum_probs=57.1
Q ss_pred cccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCH----HHH-----hcceEEE-ccCCC
Q 040099 402 ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQL----KWI-----REKIGLV-SQEPV 471 (1236)
Q Consensus 402 ~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~----~~~-----r~~i~~v-~Q~~~ 471 (1236)
++++++|++++|++++++|++|+||||++..|++.+.+..|+|.+.+.|+..... ..+ +.++.++ +|...
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 3467888899999999999999999999999999999999999998888754321 233 5678999 67644
Q ss_pred CC
Q 040099 472 LL 473 (1236)
Q Consensus 472 l~ 473 (1236)
..
T Consensus 174 ~~ 175 (320)
T 1zu4_A 174 AD 175 (320)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 339
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.13 E-value=8.1e-07 Score=94.45 Aligned_cols=61 Identities=18% Similarity=0.145 Sum_probs=40.3
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCC
Q 040099 408 LLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPV 471 (1236)
Q Consensus 408 ~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~ 471 (1236)
+++++|++++|+|||||||||++++|.+.+.|+.| +.+ +...+... ...+..++|++|++.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~ 61 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRD 61 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHH
Confidence 46889999999999999999999999999977655 212 22222211 111234778888753
No 340
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.13 E-value=2.4e-06 Score=98.03 Aligned_cols=68 Identities=18% Similarity=0.176 Sum_probs=48.7
Q ss_pred ccccceeE--EecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEE-EECCeecCCCCHHHHhcceEEEccCCC
Q 040099 401 QILNGFCL--LIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV-LIDGVNLKEFQLKWIREKIGLVSQEPV 471 (1236)
Q Consensus 401 ~~l~~i~~--~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i-~~~g~~~~~~~~~~~r~~i~~v~Q~~~ 471 (1236)
+.|+.+-= -+++|+++.|.||+|||||||+..+++...+..|.+ ++++.+.. + ..+.+++|+.+|+..
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~-~~ra~rlgv~~~~l~ 117 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--D-PVYAKNLGVDLKSLL 117 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--C-HHHHHHHTCCGGGCE
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--c-hHHHHHcCCchhhhh
Confidence 34555422 488999999999999999999999999888877865 66654322 1 224456777766543
No 341
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.11 E-value=1.5e-06 Score=92.54 Aligned_cols=48 Identities=25% Similarity=0.300 Sum_probs=40.3
Q ss_pred ceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChh
Q 040099 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSD 1101 (1236)
Q Consensus 1031 ~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~g 1101 (1236)
++-=++++|+.++|+|++||||||+++.|.+.++ .+.+++||+++|++
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE 60 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH
Confidence 4445788999999999999999999999999875 36788888887765
No 342
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.09 E-value=1.3e-06 Score=92.65 Aligned_cols=46 Identities=15% Similarity=0.049 Sum_probs=25.0
Q ss_pred EECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 392 FSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 392 f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
.+|+.++...+++||||++++|++++|+|++||||||+.+.|++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 4 HHHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3566556678999999999999999999999999999999999866
No 343
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.08 E-value=5e-07 Score=102.68 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=51.2
Q ss_pred CccccEEEeEEEEECCCCCCccccc--------------ceeEEecCCCEEEEEcCCCCChHHHHHHHhcccC
Q 040099 1006 NVMGEVQFLRVSFKYPTRPHIEVFR--------------DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD 1064 (1236)
Q Consensus 1006 ~~~g~I~f~~Vsf~Y~~~~~~~vL~--------------~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~ 1064 (1236)
...+.|.|+||+|.||.. ..+|+ |+++.|.+||+++|+|++|+|||||++.|.|+..
T Consensus 129 ~~~~ri~Fe~ltp~yP~e--r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 129 NARNKILFENLTPLHANS--RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp HHTTSCCTTTSCEESCCS--BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred hhcCCceeccccccCCCC--ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 346789999999999964 45788 9999999999999999999999999999999863
No 344
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.07 E-value=1e-07 Score=108.27 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=50.1
Q ss_pred CCCcEEEEeEEEECCCCCCCcccc--------------ceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 381 IRGDIELKDVNFSYPARPDEQILN--------------GFCLLIPNGTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 381 ~~~~i~~~~v~f~y~~~~~~~~l~--------------~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
.++.++|+||+|.||. ++.+|+ |+++.+.+|++++|+||+|+|||||++.|.++.
T Consensus 130 ~~~ri~Fe~ltp~yP~--er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 130 ARNKILFENLTPLHAN--SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HTTSCCTTTSCEESCC--SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred hcCCceeccccccCCC--CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4578999999999984 457899 999999999999999999999999999999975
No 345
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.03 E-value=2.5e-06 Score=108.74 Aligned_cols=144 Identities=18% Similarity=0.232 Sum_probs=85.3
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHHhhhc
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANAN 1114 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~~ 1114 (1236)
.+..|+.+.|+|||||||||++.++.....+..| +| .++.+ -|-.......+.+.+.+..+..
T Consensus 105 ~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~----~g------------~~ilv-l~P~r~La~q~~~~l~~~~~~~ 167 (773)
T 2xau_A 105 LYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHL----EN------------TQVAC-TQPRRVAAMSVAQRVAEEMDVK 167 (773)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGG----GT------------CEEEE-EESCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCCeEEEECCCCCCHHHHHHHHHHHhccccC----CC------------ceEEe-cCchHHHHHHHHHHHHHHhCCc
Confidence 3567899999999999999988887655444332 01 01111 1110001112222222111110
Q ss_pred hHHHhhhhchh----hhh--cCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCC-CCCHHHHHHHHHHHHHHcCC-CeE
Q 040099 1115 GFISGLQEGYD----TLV--GERGVQLSGGQKQRVAIARAIVKEPKILLLDEATS-ALDIESERVVQDALDQVMVD-RTT 1186 (1236)
Q Consensus 1115 ~~i~~lp~Gld----t~v--ge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTS-aLD~~te~~I~~~L~~~~~~-~Tv 1186 (1236)
+ ..--|+. ... +..-.-+|+|+.+|..++++++.+++++|+|||.. ++|.+.-..+.+.+.....+ +++
T Consensus 168 --v-~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iI 244 (773)
T 2xau_A 168 --L-GEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKII 244 (773)
T ss_dssp --B-TTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred --h-hheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEE
Confidence 0 0000111 000 11123578999999999999999999999999997 99988776666666665544 455
Q ss_pred EE-EecCchhhhh
Q 040099 1187 LV-VAHRLSTIKN 1198 (1236)
Q Consensus 1187 I~-IaHRl~ti~~ 1198 (1236)
++ .||..+.+..
T Consensus 245 l~SAT~~~~~l~~ 257 (773)
T 2xau_A 245 IMSATLDAEKFQR 257 (773)
T ss_dssp EEESCSCCHHHHH
T ss_pred EEeccccHHHHHH
Confidence 55 4898877654
No 346
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.02 E-value=8.4e-06 Score=94.60 Aligned_cols=123 Identities=16% Similarity=0.160 Sum_probs=81.8
Q ss_pred CEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHHhhhchHHHh
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISG 1119 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~~~~i~~ 1119 (1236)
-++++||++|+|||||++.|.+.. + .+++.+..+. ...++.++++.. ...+.|
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~-~-----~~~~~~~~t~-----~~~~~~~~~~~~------------~~~l~D---- 220 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAK-P-----EIASYPFTTR-----GINVGQFEDGYF------------RYQIID---- 220 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSC-C-----EEECCTTCSS-----CEEEEEEEETTE------------EEEEEE----
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-C-----ccCCCCCeee-----ceeEEEEEecCc------------eEEEEe----
Confidence 479999999999999999998864 2 1222222211 112344443321 011111
Q ss_pred hhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEe-cCCCCCCHHHHHHHHHHHHHHcCCCeEEEEe--cCch
Q 040099 1120 LQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLD-EATSALDIESERVVQDALDQVMVDRTTLVVA--HRLS 1194 (1236)
Q Consensus 1120 lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLD-EaTSaLD~~te~~I~~~L~~~~~~~TvI~Ia--HRl~ 1194 (1236)
.|+-.+ .....+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.+...+..+|+|. |++.
T Consensus 221 t~G~~~----~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 221 TPGLLD----RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp CTTTSS----SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred CCCccc----cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 122111 223458999999887 66666788899999 9999999998888888887766688899998 7764
No 347
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.02 E-value=1.8e-05 Score=90.75 Aligned_cols=61 Identities=18% Similarity=0.263 Sum_probs=45.9
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEE-EECCeecccCChHHHhcceEEEcCCCCC
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI-TLDGVEIQKLQVKWLRQQMGVVSQEPVL 1098 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I-~idG~di~~i~~~~lR~~i~~V~Qdp~L 1098 (1236)
-+++|+.+.|.||+|||||||+..+.+...+..|.+ +||+.+.. + ....+++++.+|+..+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~-~~ra~rlgv~~~~l~i 118 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--D-PVYAKNLGVDLKSLLI 118 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--C-HHHHHHHTCCGGGCEE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--c-hHHHHHcCCchhhhhh
Confidence 589999999999999999999999999887777765 67664432 2 2245567776666443
No 348
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.97 E-value=3.5e-07 Score=99.37 Aligned_cols=64 Identities=19% Similarity=0.204 Sum_probs=50.6
Q ss_pred eEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccC------ChHH----HhcceEEEcCCCCCCh
Q 040099 1033 CLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKL------QVKW----LRQQMGVVSQEPVLFS 1100 (1236)
Q Consensus 1033 s~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i------~~~~----lR~~i~~V~Qdp~LF~ 1100 (1236)
+.+.++|+.++|+|++||||||++++|.++ +|+|.++|.|.... .... .++.+++++|++.++.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 446689999999999999999999999998 79999999887532 1111 2567889999876654
No 349
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.97 E-value=1.7e-06 Score=90.10 Aligned_cols=66 Identities=17% Similarity=0.182 Sum_probs=47.6
Q ss_pred cceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCe--ecCCCCH----HHHhcceEEEccCC
Q 040099 404 NGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGV--NLKEFQL----KWIREKIGLVSQEP 470 (1236)
Q Consensus 404 ~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~--~~~~~~~----~~~r~~i~~v~Q~~ 470 (1236)
+++++++.+| +++|+||||||||||+++|.+...+..|...-.+. ++-.... ...+..|.+++|++
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~ 89 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE 89 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence 6889999999 99999999999999999999988887765432221 1110000 01345799999986
No 350
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.97 E-value=2.2e-06 Score=91.13 Aligned_cols=69 Identities=16% Similarity=0.113 Sum_probs=43.9
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhH---hhcCeEEEEE
Q 040099 524 LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLI---RNANIIAVIQ 595 (1236)
Q Consensus 524 LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~---~~ad~i~vl~ 595 (1236)
.+.|+.+|..+++.+..+|+.+-.+ .+.++|...+.+.+.+... .+.++|+-+|.+... ..||.+++++
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 4688999999999999888654333 3455666666666655543 356788888877553 4599999986
No 351
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.96 E-value=8.4e-08 Score=115.31 Aligned_cols=136 Identities=18% Similarity=0.209 Sum_probs=89.3
Q ss_pred EeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEE
Q 040099 1013 FLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVV 1092 (1236)
Q Consensus 1013 f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V 1092 (1236)
++++...|.. +.+++++++++++| +.|+||+|+|||||+++|.+... .|.|.++|.++.+......++++..+
T Consensus 43 l~~lv~~l~~---~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~l 115 (499)
T 2dhr_A 43 LKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 115 (499)
T ss_dssp HHHHHHHHHC---GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHH
T ss_pred HHHHHHHhhc---hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHH
Confidence 4444444432 24799999999999 99999999999999999999875 78999999888665444555666677
Q ss_pred cCCCC-CChh-hHHHHHHHHhhh--------chHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCC
Q 040099 1093 SQEPV-LFSD-TIRANIAEMANA--------NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEAT 1162 (1236)
Q Consensus 1093 ~Qdp~-LF~g-TIreNL~~~a~~--------~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaT 1162 (1236)
+|++. .+.+ .+.|+|+..... ++... +-++..+. .|||||+|+..+++|...+|++ ||||.
T Consensus 116 fq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~---~~l~~LL~----~Ldg~~~~~~viviAatn~p~~--LD~aL 186 (499)
T 2dhr_A 116 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDERE---QTLNQLLV----EMDGFEKDTAIVVMAATNRPDI--LDPAL 186 (499)
T ss_dssp TTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHH---HHHHHHHH----HGGGCCSSCCCEEEECCSCGGG--SCTTT
T ss_pred HHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHH---HHHHHHHH----HhcccccCccEEEEEecCChhh--cCccc
Confidence 77653 1221 233343211100 00000 00111221 3788888888889999888887 88887
Q ss_pred CC
Q 040099 1163 SA 1164 (1236)
Q Consensus 1163 Sa 1164 (1236)
-.
T Consensus 187 lr 188 (499)
T 2dhr_A 187 LR 188 (499)
T ss_dssp SS
T ss_pred cc
Confidence 53
No 352
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.96 E-value=1.8e-07 Score=105.99 Aligned_cols=126 Identities=14% Similarity=0.193 Sum_probs=73.3
Q ss_pred CccccceeEEecCCc------EEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCeecCCCCHHHHhcceEEEccCCC
Q 040099 400 EQILNGFCLLIPNGT------IAALVGTSGSGKSTVISLIQRFYD--PQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPV 471 (1236)
Q Consensus 400 ~~~l~~i~~~i~~g~------~~~ivG~sGsGKSTl~~ll~~~~~--~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~ 471 (1236)
.+.|++++..+.+++ ++||+||||||||||+++|.+++. |++|. ++++++|.+
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~-------------------v~~i~~D~f 133 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN-------------------VEVITTDGF 133 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC-------------------EEEEEGGGG
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe-------------------EEEEeeccc
Confidence 357888888887776 999999999999999999999987 44554 455666665
Q ss_pred CCchhHHHHH----hcCCCCC-CHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEE
Q 040099 472 LLSSSIRDNI----AYGKTHA-TKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILL 546 (1236)
Q Consensus 472 l~~~ti~~ni----~~g~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ili 546 (1236)
..+....+.. .+|.|.. +.+.+.+ ++..+..|-++. .- -..|-+..+|+.-+...+.+|+|+|
T Consensus 134 ~~~~~~l~~~~~~~~~g~P~~~D~~~l~~---------~L~~L~~g~~~v-~~--P~yd~~~~~r~~~~~~~v~~~dIVI 201 (321)
T 3tqc_A 134 LYSNAKLEKQGLMKRKGFPESYDMPSLLR---------VLNAIKSGQRNV-RI--PVYSHHYYDIVRGQYEIVDQPDIVI 201 (321)
T ss_dssp BCCHHHHHHTTCGGGTTSGGGBCHHHHHH---------HHHHHHTTCSSE-EE--EEEETTTTEEEEEEEEEECSCSEEE
T ss_pred ccchhhhhhHHHHhhccCcccccHHHHHH---------HHHhhhcccccc-cc--chhhhhccccccCceeeccCCCEEE
Confidence 5544333321 1233322 2222322 222222332100 00 0122222233333345567999999
Q ss_pred EeCcCCCCCH
Q 040099 547 LDEATSALDS 556 (1236)
Q Consensus 547 lDE~ts~lD~ 556 (1236)
++.+..-.|.
T Consensus 202 vEGi~lL~~~ 211 (321)
T 3tqc_A 202 LEGLNILQTG 211 (321)
T ss_dssp EECTTTTCCC
T ss_pred EEcccccccc
Confidence 9999876554
No 353
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.95 E-value=1.2e-05 Score=93.30 Aligned_cols=61 Identities=13% Similarity=0.109 Sum_probs=48.7
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEEe-CcCCCCCHHHHHHHHHHHHHHccCceEEEEe--cCch
Q 040099 522 IQLSGGQKQRVAIARAMIKDPRILLLD-EATSALDSESGRMVQEALDRVMINRTTVIVS--HRLS 583 (1236)
Q Consensus 522 ~~LSgGqkqRiaiARal~~~p~ililD-E~ts~lD~~~~~~i~~~l~~~~~~~t~i~it--H~~~ 583 (1236)
..+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.+...++.+|+|. |++.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 468999999887 66666788899999 9999999998877777777655577888888 6653
No 354
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.94 E-value=4e-06 Score=89.20 Aligned_cols=126 Identities=20% Similarity=0.238 Sum_probs=74.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHHhhhchHHHhh
Q 040099 1041 TIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGL 1120 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~~~~i~~l 1120 (1236)
.+||+|++||||||+.+.|.++ |...+|+-++ .+.+. + | ++ +++.+ ...
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~~--------~~~~~---~-~----~~--~~~~~------i~~-- 52 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADVV--------AREVV---A-K----DS--PLLSK------IVE-- 52 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHHH--------HHHTT---C-S----SC--HHHHH------HHH--
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHHH--------HHHHc---c-C----Ch--HHHHH------HHH--
Confidence 5899999999999999999983 6556654222 11111 0 1 10 11111 111
Q ss_pred hhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhh---h
Q 040099 1121 QEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTI---K 1197 (1236)
Q Consensus 1121 p~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti---~ 1197 (1236)
..|+.. -.+.|+.+|..+++.+..+|..+-.+ ++.+++...+.+.+.+... .+.++|+-+|.+... .
T Consensus 53 ------~~g~~~-~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~ 122 (206)
T 1jjv_A 53 ------HFGAQI-LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTA 122 (206)
T ss_dssp ------HHCTTC-C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGG
T ss_pred ------HhCHHH-hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHh
Confidence 112221 23678999999999999888654333 3456677666666666543 356788888887664 4
Q ss_pred hcCEEEEEeC
Q 040099 1198 NAHLIAVVSQ 1207 (1236)
Q Consensus 1198 ~aD~I~Vl~~ 1207 (1236)
.||.+++++.
T Consensus 123 ~~d~vi~l~~ 132 (206)
T 1jjv_A 123 LCDRILVVDV 132 (206)
T ss_dssp GCSEEEEEEC
T ss_pred hCCEEEEEEC
Confidence 5999999863
No 355
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.94 E-value=1.1e-06 Score=93.90 Aligned_cols=64 Identities=25% Similarity=0.221 Sum_probs=46.2
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhcccCC-CCcEEE----------ECCeecccCChHHHhcceEEEcCCCCCChhhH
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQRFYDP-SSGHIT----------LDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTI 1103 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~-~~G~I~----------idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTI 1103 (1236)
++|+.++|+||||||||||++.|.+.+++ ..+.+. .+|++..-++...+++.+ .|+.+++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~ 80 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEY 80 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEE
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEE
Confidence 68999999999999999999999999976 333333 456666666666666543 45555544443
No 356
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.93 E-value=1.3e-05 Score=102.22 Aligned_cols=65 Identities=12% Similarity=0.136 Sum_probs=52.2
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEEeCcCC-CCCHHHHHHHHHHHHHHccC-ceEEE-EecCchhHh
Q 040099 522 IQLSGGQKQRVAIARAMIKDPRILLLDEATS-ALDSESGRMVQEALDRVMIN-RTTVI-VSHRLSLIR 586 (1236)
Q Consensus 522 ~~LSgGqkqRiaiARal~~~p~ililDE~ts-~lD~~~~~~i~~~l~~~~~~-~t~i~-itH~~~~~~ 586 (1236)
.-+|+|+.+|..++++++.+++++|+|||.. +||.+....+.+.+.+...+ +++++ .||+.+.+.
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~ 256 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQ 256 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHH
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHH
Confidence 4589999999999999999999999999997 99988766666666555544 56666 489877664
No 357
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.93 E-value=2.1e-05 Score=92.35 Aligned_cols=158 Identities=20% Similarity=0.198 Sum_probs=95.9
Q ss_pred EeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCCh----HHHhc-
Q 040099 1013 FLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQV----KWLRQ- 1087 (1236)
Q Consensus 1013 f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~----~~lR~- 1087 (1236)
.++++..|.... ++++|+ +|+.++++|++||||||++..|.+.+.+.+|+|.+.+.|+..... ..+++
T Consensus 79 ~~~L~~~~~~~~-----~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~ 151 (425)
T 2ffh_A 79 YEALKEALGGEA-----RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEK 151 (425)
T ss_dssp HHHHHHHTTSSC-----CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCc-----ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhccc
Confidence 344556664321 677887 899999999999999999999999999999999998888765332 22333
Q ss_pred -ceEEEcCCCCCChhhHHHHHHHHhhhchHHHhh-hhchhhhhcCCCCCCC---hhHHHHHHHHHHHccCCCEEEEecCC
Q 040099 1088 -QMGVVSQEPVLFSDTIRANIAEMANANGFISGL-QEGYDTLVGERGVQLS---GGQKQRVAIARAIVKEPKILLLDEAT 1162 (1236)
Q Consensus 1088 -~i~~V~Qdp~LF~gTIreNL~~~a~~~~~i~~l-p~Gldt~vge~G~~LS---GGQrQRlaLARALlr~p~ILlLDEaT 1162 (1236)
.+-+++..+.--...+. .+.+..+ .+++|..+=+.+..++ .-..+...+++++.-++-+|++| ++
T Consensus 152 ~gv~v~~~~~~~~p~~i~---------~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvD-a~ 221 (425)
T 2ffh_A 152 VGVPVLEVMDGESPESIR---------RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD-AM 221 (425)
T ss_dssp HTCCEEECCTTCCHHHHH---------HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE-GG
T ss_pred CCccEEecCCCCCHHHHH---------HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEe-cc
Confidence 24445443311111111 1223333 2566654433322332 34567778888887777788888 55
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCeEEEEec
Q 040099 1163 SALDIESERVVQDALDQVMVDRTTLVVAH 1191 (1236)
Q Consensus 1163 SaLD~~te~~I~~~L~~~~~~~TvI~IaH 1191 (1236)
++.|.... + +.+.+. -+.+-++++|
T Consensus 222 tgq~av~~--a-~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 222 TGQEALSV--A-RAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp GTTHHHHH--H-HHHHHH-TCCCEEEEES
T ss_pred chHHHHHH--H-HHHHhc-CCceEEEEeC
Confidence 56555432 2 233322 2446666665
No 358
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.92 E-value=2.8e-06 Score=88.38 Aligned_cols=66 Identities=15% Similarity=0.169 Sum_probs=48.0
Q ss_pred cceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCe--ecccCCh----HHHhcceEEEcCCC
Q 040099 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV--EIQKLQV----KWLRQQMGVVSQEP 1096 (1236)
Q Consensus 1030 ~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~--di~~i~~----~~lR~~i~~V~Qdp 1096 (1236)
+++++++.+| .++|+||||||||||+.+|..+..+..|...-.+. ++-.... ...+..|.++.|+|
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~ 89 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE 89 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence 7889999999 99999999999999999999988777665433331 1111110 02345788898886
No 359
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.86 E-value=5.5e-07 Score=97.80 Aligned_cols=64 Identities=17% Similarity=0.187 Sum_probs=48.1
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCC------CHHH----HhcceEEEccCCCCCc
Q 040099 407 CLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEF------QLKW----IREKIGLVSQEPVLLS 474 (1236)
Q Consensus 407 ~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~------~~~~----~r~~i~~v~Q~~~l~~ 474 (1236)
+.+.++|++++|+|++||||||++++|.+. .|+|.+.+.|.... .... .++.+++++|++.++.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 345679999999999999999999999998 78999998875421 1111 1456788888765543
No 360
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.85 E-value=7.5e-06 Score=93.66 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=25.5
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHcC
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQRF 436 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~ 436 (1236)
-+++|+++.|.||+|||||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5889999999999999999999888764
No 361
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.82 E-value=4.7e-06 Score=102.05 Aligned_cols=59 Identities=20% Similarity=0.329 Sum_probs=48.0
Q ss_pred EeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCe
Q 040099 1013 FLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV 1075 (1236)
Q Consensus 1013 f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~ 1075 (1236)
.+++..+|. ...+++++++++ +|+.+.|+||+|+|||||+++|.+...+..|.|.++|.
T Consensus 86 ~~~vk~~i~---~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 86 LEKVKERIL---EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp CHHHHHHHH---HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred HHHHHHHHH---HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 344555553 224788889988 89999999999999999999999999988888888773
No 362
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.81 E-value=3.8e-05 Score=90.32 Aligned_cols=40 Identities=33% Similarity=0.425 Sum_probs=35.7
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeec
Q 040099 1038 PGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEI 1077 (1236)
Q Consensus 1038 ~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di 1077 (1236)
++..++++|++||||||++..|.+.+.+..++|.+-+.|+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 5789999999999999999999999998888988866664
No 363
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.77 E-value=7e-05 Score=87.93 Aligned_cols=160 Identities=16% Similarity=0.166 Sum_probs=92.4
Q ss_pred EEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHH-HhcceEE
Q 040099 387 LKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKW-IREKIGL 465 (1236)
Q Consensus 387 ~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~i~~ 465 (1236)
.+++++.|++. . ++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|.......+ ++..
T Consensus 79 ~~~L~~~~~~~---~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~--- 148 (425)
T 2ffh_A 79 YEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL--- 148 (425)
T ss_dssp HHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH---
T ss_pred HHHHHHHhCCC---c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh---
Confidence 34556666421 1 567887 89999999999999999999999999999999998877765432211 2110
Q ss_pred EccCCCCCchhHHHHHhc--CCCCCCHHHH-HHHHHHhccHHHHHhC-CCCccccccCCCCCCC---hHHHHHHHHHHHh
Q 040099 466 VSQEPVLLSSSIRDNIAY--GKTHATKEEI-QAAAEAANASHFIKNL-PQGLDTNVGEHGIQLS---GGQKQRVAIARAM 538 (1236)
Q Consensus 466 v~Q~~~l~~~ti~~ni~~--g~~~~~~~~~-~~~~~~~~~~~~i~~l-~~g~~t~~g~~g~~LS---gGqkqRiaiARal 538 (1236)
.-..|+-+ ..+..+..++ .++. ..+ .++||..+=+-+..++ .-..+...+++++
T Consensus 149 ----------~~~~gv~v~~~~~~~~p~~i~~~~l---------~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~ 209 (425)
T 2ffh_A 149 ----------GEKVGVPVLEVMDGESPESIRRRVE---------EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (425)
T ss_dssp ----------HHHHTCCEEECCTTCCHHHHHHHHH---------HHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred ----------cccCCccEEecCCCCCHHHHHHHHH---------HHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhcc
Confidence 00111111 0111233333 2222 222 1366654433222332 3456777888888
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEec
Q 040099 539 IKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSH 580 (1236)
Q Consensus 539 ~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH 580 (1236)
..++-+|++| ++++.|..... +.+.+. -+.+-+++|+
T Consensus 210 ~pd~vlLVvD-a~tgq~av~~a---~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 210 GPDEVLLVLD-AMTGQEALSVA---RAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp CCSEEEEEEE-GGGTTHHHHHH---HHHHHH-TCCCEEEEES
T ss_pred CCceEEEEEe-ccchHHHHHHH---HHHHhc-CCceEEEEeC
Confidence 7777788888 55665554321 222221 2456677775
No 364
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.74 E-value=8.8e-05 Score=86.73 Aligned_cols=123 Identities=17% Similarity=0.195 Sum_probs=69.7
Q ss_pred cCCC--EEEEEcCCCCChHHHHHHHhcccCCCC--cEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHHhh
Q 040099 1037 PPGK--TIALVGESGSGKSTVISLLQRFYDPSS--GHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMAN 1112 (1236)
Q Consensus 1037 ~~Ge--~vaIVG~SGSGKSTL~~lL~r~~~~~~--G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~ 1112 (1236)
++|. .+.|+||+|+||||+++.+.+...+.. .-+.++. .+..-...+...+.+..
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~--------------------~~~~~~~~~~~~l~~~l- 98 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYING--------------------FIYRNFTAIIGEIARSL- 98 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEET--------------------TTCCSHHHHHHHHHHHT-
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeC--------------------ccCCCHHHHHHHHHHHh-
Confidence 3456 899999999999999999999887653 2222221 11111112222222111
Q ss_pred hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHH--ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc----CCCeE
Q 040099 1113 ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAI--VKEPKILLLDEATSALDIESERVVQDALDQVM----VDRTT 1186 (1236)
Q Consensus 1113 ~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARAL--lr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~----~~~Tv 1186 (1236)
|. ..... ..+.++.... +...+ ..+|.+|+|||+... |......+.+.+.+.. .+.++
T Consensus 99 ----------~~--~~~~~--~~~~~~~~~~-l~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~i 162 (389)
T 1fnn_A 99 ----------NI--PFPRR--GLSRDEFLAL-LVEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIAL 162 (389)
T ss_dssp ----------TC--CCCSS--CCCHHHHHHH-HHHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEE
T ss_pred ----------Cc--cCCCC--CCCHHHHHHH-HHHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEE
Confidence 11 11111 1233332211 11111 245889999999987 8777777766665433 36688
Q ss_pred EEEecCchhh
Q 040099 1187 LVVAHRLSTI 1196 (1236)
Q Consensus 1187 I~IaHRl~ti 1196 (1236)
|+++|+.+..
T Consensus 163 I~~~~~~~~~ 172 (389)
T 1fnn_A 163 VIVGHNDAVL 172 (389)
T ss_dssp EEEESSTHHH
T ss_pred EEEECCchHH
Confidence 8899988543
No 365
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.73 E-value=6.6e-06 Score=84.97 Aligned_cols=55 Identities=25% Similarity=0.239 Sum_probs=42.6
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhc-ceEEEcCCCC
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ-QMGVVSQEPV 1097 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~-~i~~V~Qdp~ 1097 (1236)
.+|+.++|+|++||||||+++.|.+.+ |.+.+|+.++.. ...+++ .+++.+|++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~~ 61 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLNDDD 61 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCccc
Confidence 578999999999999999999999876 889999877653 222333 4677777643
No 366
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.72 E-value=2.2e-06 Score=104.31 Aligned_cols=45 Identities=33% Similarity=0.378 Sum_probs=40.3
Q ss_pred EEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCc-EEE-ECCeecc
Q 040099 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG-HIT-LDGVEIQ 1078 (1236)
Q Consensus 1034 ~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G-~I~-idG~di~ 1078 (1236)
..+++|+.++|+|+||||||||+++|.+.+.|++| +|. +||.++.
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence 35889999999999999999999999999999887 784 9997764
No 367
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.71 E-value=6.1e-06 Score=85.21 Aligned_cols=38 Identities=37% Similarity=0.469 Sum_probs=33.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecC
Q 040099 411 PNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLK 452 (1236)
Q Consensus 411 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~ 452 (1236)
++|++++|+|++||||||+++.|.+.+ |.+.+++.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 579999999999999999999999875 88999886654
No 368
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.70 E-value=7.4e-05 Score=85.12 Aligned_cols=107 Identities=12% Similarity=0.148 Sum_probs=67.4
Q ss_pred cccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHH
Q 040099 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI 1107 (1236)
Q Consensus 1028 vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL 1107 (1236)
-|+.+.--++||+.+.|.||+|+||||++.-+..-.....+.+. |++=| .+-.+-.
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl-------------------~fSlE-----ms~~ql~ 90 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVA-------------------VFSLE-----MSAEQLA 90 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEE-------------------EEESS-----SCHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEE-------------------EEeCC-----CCHHHHH
Confidence 57777778999999999999999999999887765433333333 33222 1211111
Q ss_pred HHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 040099 1108 AEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALD 1166 (1236)
Q Consensus 1108 ~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD 1166 (1236)
.++.... ...+ ++... .| .||.+++||++.|...+.++++.|.|+|+.++|
T Consensus 91 ~Rlls~~---~~v~--~~~l~--~g-~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 91 LRALSDL---TSIN--MHDLE--SG-RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp HHHHHHH---HCCC--HHHHH--HT-CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred HHHHHHh---hCCC--HHHHh--cC-CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 1111100 0000 00011 12 589999999999999999999999999876554
No 369
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.67 E-value=3.4e-05 Score=87.94 Aligned_cols=123 Identities=11% Similarity=0.169 Sum_probs=77.6
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHH
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDN 480 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n 480 (1236)
+-|+.+.--+++|+.+.|.|++|+|||||+.-++.......+ .+.|++=|
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~-------------------~Vl~fSlE----------- 83 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDR-------------------GVAVFSLE----------- 83 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-------------------EEEEEESS-----------
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC-------------------eEEEEeCC-----------
Confidence 357777667999999999999999999999887654432222 23443322
Q ss_pred HhcCCCCCCHHHHHHHH--HHhcc--HHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCH
Q 040099 481 IAYGKTHATKEEIQAAA--EAANA--SHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDS 556 (1236)
Q Consensus 481 i~~g~~~~~~~~~~~~~--~~~~~--~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~ 556 (1236)
.+.+++..-+ ..+++ +... . ..||+++.||++.|...+.+++++|.|+|...+|
T Consensus 84 -------ms~~ql~~Rlls~~~~v~~~~l~-----------~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~- 141 (338)
T 4a1f_A 84 -------MSAEQLALRALSDLTSINMHDLE-----------S---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE- 141 (338)
T ss_dssp -------SCHHHHHHHHHHHHHCCCHHHHH-----------H---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-
T ss_pred -------CCHHHHHHHHHHHhhCCCHHHHh-----------c---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-
Confidence 2334433221 11111 1111 0 2699999999999999999999999999865433
Q ss_pred HHHHHHHHHHHHHc--c-CceEEEEe
Q 040099 557 ESGRMVQEALDRVM--I-NRTTVIVS 579 (1236)
Q Consensus 557 ~~~~~i~~~l~~~~--~-~~t~i~it 579 (1236)
.|...++++. . +..+|+|-
T Consensus 142 ----~i~~~ir~l~~~~gg~~lIVID 163 (338)
T 4a1f_A 142 ----QIRLQLRKLKSQHKELGIAFID 163 (338)
T ss_dssp ----HHHHHHHHHHHHCTTEEEEEEE
T ss_pred ----HHHHHHHHHHHhcCCCCEEEEe
Confidence 3333333332 2 45666663
No 370
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.67 E-value=1.2e-05 Score=85.09 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=42.2
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChH
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVK 1083 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~ 1083 (1236)
..++|+.++|+|+|||||||+++.|.+.+++.+|.|.+.+.|....+..
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~ 66 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERA 66 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHH
Confidence 3578899999999999999999999999998899999887776555543
No 371
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.63 E-value=5.5e-05 Score=88.97 Aligned_cols=39 Identities=31% Similarity=0.398 Sum_probs=34.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCee
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVN 450 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~ 450 (1236)
++.+++++||+||||||++..|++.+.+..++|.+-+.|
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 578999999999999999999999998888888775544
No 372
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.59 E-value=1.6e-05 Score=84.20 Aligned_cols=46 Identities=17% Similarity=0.133 Sum_probs=39.5
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCC
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEF 454 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~ 454 (1236)
..++|++++|+|+|||||||+++.|.+.+++..|.|.+.+.|....
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~ 63 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIV 63 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCC
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccC
Confidence 3578999999999999999999999999998899998876665433
No 373
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.59 E-value=0.00025 Score=82.81 Aligned_cols=45 Identities=18% Similarity=0.086 Sum_probs=33.7
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc----CceEEEEecCchhH
Q 040099 540 KDPRILLLDEATSALDSESGRMVQEALDRVMI----NRTTVIVSHRLSLI 585 (1236)
Q Consensus 540 ~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~----~~t~i~itH~~~~~ 585 (1236)
.+|.++++||+... |......+.+.+.+... +.++|+++|+.+..
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 45889999999887 88777777777655432 56788889988543
No 374
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.54 E-value=2.9e-05 Score=88.76 Aligned_cols=128 Identities=20% Similarity=0.260 Sum_probs=73.1
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhccc-CC------CCcEEEECCeecccCChHHHhcc---eEEEcCCCCCChhhHH
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFY-DP------SSGHITLDGVEIQKLQVKWLRQQ---MGVVSQEPVLFSDTIR 1104 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~-~~------~~G~I~idG~di~~i~~~~lR~~---i~~V~Qdp~LF~gTIr 1104 (1236)
-+++|+.+.|.||+|||||||+..+..-. .+ ..+.++|+.... ++.+.+++. +++-+ ..+.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~--~~~~~l~~~~~~~g~~~-------~~~~ 173 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT--FRWERIENMAKALGLDI-------DNVM 173 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CCHHHHHHHHHHTTCCH-------HHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC--CCHHHHHHHHHHhCCCH-------HHHh
Confidence 68999999999999999999998877543 33 233455554321 223322221 11100 0011
Q ss_pred HHHHHHhhhchHHHhhhhchhhhhcCCCCCCCh-hHHHHHHHHHHHc---cCCCEEEEecCCCCCCHH-------HH--H
Q 040099 1105 ANIAEMANANGFISGLQEGYDTLVGERGVQLSG-GQKQRVAIARAIV---KEPKILLLDEATSALDIE-------SE--R 1171 (1236)
Q Consensus 1105 eNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSG-GQrQRlaLARALl---r~p~ILlLDEaTSaLD~~-------te--~ 1171 (1236)
+|+ .+.. ..++ -+.+.+..+++++ .+|+++|+|+.|+-.+.+ ++ .
T Consensus 174 ~~l-------------------~~~~---~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~ 231 (324)
T 2z43_A 174 NNI-------------------YYIR---AINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQ 231 (324)
T ss_dssp HTE-------------------EEEE---CCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHH
T ss_pred ccE-------------------EEEe---CCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHH
Confidence 110 0000 1122 2456788888888 579999999999876432 11 2
Q ss_pred HHHHHH---HHHc--CCCeEEEEecCc
Q 040099 1172 VVQDAL---DQVM--VDRTTLVVAHRL 1193 (1236)
Q Consensus 1172 ~I~~~L---~~~~--~~~TvI~IaHRl 1193 (1236)
.+.+.+ ++.. .++|||++.|-.
T Consensus 232 ~~~~~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 232 KLNKHLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEccee
Confidence 344433 3322 278999998854
No 375
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.51 E-value=1.9e-05 Score=89.44 Aligned_cols=50 Identities=16% Similarity=0.293 Sum_probs=39.7
Q ss_pred ccccceeEEecCCC------EEEEEcCCCCChHHHHHHHhcccC--CCCcEEEECCee
Q 040099 1027 EVFRDLCLTIPPGK------TIALVGESGSGKSTVISLLQRFYD--PSSGHITLDGVE 1076 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge------~vaIVG~SGSGKSTL~~lL~r~~~--~~~G~I~idG~d 1076 (1236)
+.|++++..+.+++ .+||+|||||||||++++|.++++ |.+|.+.+-+.|
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D 131 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTD 131 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeec
Confidence 46777787777776 899999999999999999999987 456665443333
No 376
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.45 E-value=6.8e-05 Score=86.31 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=25.7
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHcC
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQRF 436 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~ 436 (1236)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999988774
No 377
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.45 E-value=0.00013 Score=79.18 Aligned_cols=132 Identities=16% Similarity=0.157 Sum_probs=73.0
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCCh-hhHHHHHHHHhhh
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFS-DTIRANIAEMANA 1113 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNL~~~a~~ 1113 (1236)
.+.+|+.+.++|||||||||++.++.--.....|. ...+.++.|.|.... -++.+|+.+..+.
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 34678999999999999999887653211111111 234677888886543 3677777533221
Q ss_pred chHHHhhhhchhhhhcC----CCC---CCChhHHHHHHHHHHHccCCCEEEEecCCC-CCCHHHHHHHHHHHHHHcCCCe
Q 040099 1114 NGFISGLQEGYDTLVGE----RGV---QLSGGQKQRVAIARAIVKEPKILLLDEATS-ALDIESERVVQDALDQVMVDRT 1185 (1236)
Q Consensus 1114 ~~~i~~lp~Gldt~vge----~G~---~LSGGQrQRlaLARALlr~p~ILlLDEaTS-aLD~~te~~I~~~L~~~~~~~T 1185 (1236)
. . ...-|+...... .+. --+.|.-.+. .+.-+++-+++|+||+-. ++|........+.+.....++.
T Consensus 136 ~-~--~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~ 210 (235)
T 3llm_A 136 E-P--GKSCGYSVRFESILPRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVR 210 (235)
T ss_dssp C-T--TSSEEEEETTEEECCCSSSEEEEEEHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSE
T ss_pred c-c--CceEEEeechhhccCCCCCeEEEECHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCe
Confidence 1 0 001122111110 100 0234555444 344689999999999976 5777666444444444444443
Q ss_pred EE
Q 040099 1186 TL 1187 (1236)
Q Consensus 1186 vI 1187 (1236)
+|
T Consensus 211 ~i 212 (235)
T 3llm_A 211 IV 212 (235)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 378
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.42 E-value=2.9e-05 Score=89.46 Aligned_cols=47 Identities=23% Similarity=0.256 Sum_probs=40.2
Q ss_pred ccccceeEEecCCCE--EEEEcCCCCChHHHHHHHhcccCCCCcEEEEC
Q 040099 1027 EVFRDLCLTIPPGKT--IALVGESGSGKSTVISLLQRFYDPSSGHITLD 1073 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~--vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~id 1073 (1236)
.+++.++..|+.|+. +.+.||+|+||||+++.+.+...+..+.+.+.
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~ 80 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVL 80 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEE
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEE
Confidence 488999999999998 99999999999999999999887666544333
No 379
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.35 E-value=2.2e-05 Score=81.31 Aligned_cols=42 Identities=40% Similarity=0.520 Sum_probs=35.1
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhcccCCCCc--EEEECCeeccc
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQRFYDPSSG--HITLDGVEIQK 1079 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G--~I~idG~di~~ 1079 (1236)
++|+.++|+|++||||||+.+.|.+.+.+ .| .|.+||..++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~~ 46 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIRQ 46 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHHH
Confidence 47999999999999999999999998866 57 77778766643
No 380
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.31 E-value=0.00039 Score=78.18 Aligned_cols=32 Identities=31% Similarity=0.421 Sum_probs=27.1
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCH
Q 040099 525 SGGQKQRVAIARAMIKDPRILLLDEATSALDS 556 (1236)
Q Consensus 525 SgGqkqRiaiARal~~~p~ililDE~ts~lD~ 556 (1236)
++++++|..+++|...+|.+|++||+.+-++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSE 128 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBC
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccc
Confidence 36788888888888899999999999887654
No 381
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.31 E-value=0.00054 Score=76.98 Aligned_cols=116 Identities=21% Similarity=0.270 Sum_probs=71.0
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHHhhhchH
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGF 1116 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~~~~ 1116 (1236)
.++..+.|.||+|+||||+++.+.+.+... -+.+++ .++
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~~~~--~~~i~~---------------------------------------~~l 90 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATECSAT--FLNISA---------------------------------------ASL 90 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTCE--EEEEES---------------------------------------TTT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCC--eEEeeH---------------------------------------HHH
Confidence 467889999999999999999999855210 011111 000
Q ss_pred HHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHH----------HHHHHHHHHHHcC----
Q 040099 1117 ISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIES----------ERVVQDALDQVMV---- 1182 (1236)
Q Consensus 1117 i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~t----------e~~I~~~L~~~~~---- 1182 (1236)
. ...+ -+++++++-.+++|...+|.+|++||+.+-++... ...+...++....
T Consensus 91 ~-------~~~~------~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 91 T-------SKYV------GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp S-------SSSC------SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred h-------hccc------chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCC
Confidence 0 0001 14678888888888888999999999988765432 1123333333221
Q ss_pred -CCeEEEEecCchhh-----hhcCEEEEEe
Q 040099 1183 -DRTTLVVAHRLSTI-----KNAHLIAVVS 1206 (1236)
Q Consensus 1183 -~~TvI~IaHRl~ti-----~~aD~I~Vl~ 1206 (1236)
+..+|..|++.+.+ +.+|+++.+.
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~ 187 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRRFTKRVYVS 187 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHHCCEEEECC
T ss_pred CcEEEEeecCChhhCCHHHHhhCCeEEEeC
Confidence 23466678886532 3577766553
No 382
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.26 E-value=3.1e-05 Score=80.20 Aligned_cols=40 Identities=33% Similarity=0.452 Sum_probs=33.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCc--EEEECCeec
Q 040099 411 PNGTIAALVGTSGSGKSTVISLIQRFYDPQAG--EVLIDGVNL 451 (1236)
Q Consensus 411 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G--~i~~~g~~~ 451 (1236)
++|++++|+|++||||||+++.|.+.+.+ .| .|.+|+..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47999999999999999999999998866 56 666776444
No 383
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.26 E-value=6.6e-05 Score=79.09 Aligned_cols=58 Identities=24% Similarity=0.444 Sum_probs=40.4
Q ss_pred EEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhc----cc----CCCCcEEEECCeec
Q 040099 1017 SFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQR----FY----DPSSGHITLDGVEI 1077 (1236)
Q Consensus 1017 sf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r----~~----~~~~G~I~idG~di 1077 (1236)
+++||+- ..+++++||+.+++ +++++|++|+|||||++.+.+ .| .++.+.+.++|.++
T Consensus 6 ~~~~~~~--~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l 71 (198)
T 1f6b_A 6 DWIYSGF--SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 71 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEE
T ss_pred HHHHHHH--HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEE
Confidence 4567653 35899999998887 689999999999999999986 22 33457777777554
No 384
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.26 E-value=0.00035 Score=80.29 Aligned_cols=131 Identities=15% Similarity=0.171 Sum_probs=71.4
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhccc-CC------CCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHH
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFY-DP------SSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI 1107 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~-~~------~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL 1107 (1236)
-+++|+.+.|.||+|||||||+..+..-. .| ..+.++||.... ++.+.+++...-+..++
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~--~~~~~l~~~~~~~g~~~----------- 184 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT--FRPDRLRDIADRFNVDH----------- 184 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC--CCHHHHHHHHHHTTCCH-----------
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC--CCHHHHHHHHHHcCCCH-----------
Confidence 68999999999999999999998887642 22 233455654321 22232222110000000
Q ss_pred HHHhhhchHHHhhhhchhhhhcCCCCCCCh-hHHHHHHHHHHHc----cCCCEEEEecCCCCCCHH-------HH-----
Q 040099 1108 AEMANANGFISGLQEGYDTLVGERGVQLSG-GQKQRVAIARAIV----KEPKILLLDEATSALDIE-------SE----- 1170 (1236)
Q Consensus 1108 ~~~a~~~~~i~~lp~Gldt~vge~G~~LSG-GQrQRlaLARALl----r~p~ILlLDEaTSaLD~~-------te----- 1170 (1236)
.++++.+ + +-. ..++ -+.+.+..++.++ .+++++|+|+.|+-.+.+ .+
T Consensus 185 ------~~~l~~l---~---~~~---~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l 249 (343)
T 1v5w_A 185 ------DAVLDNV---L---YAR---AYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKL 249 (343)
T ss_dssp ------HHHHHTE---E---EEE---CCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHH
T ss_pred ------HHHHhce---e---Eee---cCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHH
Confidence 0011110 0 000 0122 2345666677776 569999999999877543 11
Q ss_pred HHHHHHHHHHc--CCCeEEEEecCc
Q 040099 1171 RVVQDALDQVM--VDRTTLVVAHRL 1193 (1236)
Q Consensus 1171 ~~I~~~L~~~~--~~~TvI~IaHRl 1193 (1236)
..+...|++.. .++|||++.|-.
T Consensus 250 ~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 250 AQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred HHHHHHHHHHHHHhCCEEEEEeece
Confidence 22233333332 378999998843
No 385
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.24 E-value=0.0003 Score=83.77 Aligned_cols=43 Identities=21% Similarity=0.279 Sum_probs=33.8
Q ss_pred CCCCEEEEeCcCCCCCH-HHHHHHHHHHHHHc-cCceEEEEecCc
Q 040099 540 KDPRILLLDEATSALDS-ESGRMVQEALDRVM-INRTTVIVSHRL 582 (1236)
Q Consensus 540 ~~p~ililDE~ts~lD~-~~~~~i~~~l~~~~-~~~t~i~itH~~ 582 (1236)
.+|++|++||+..-.+. .+...+...+..+. .++.+|++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 38999999999887764 56777888887754 467888889974
No 386
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.23 E-value=5.3e-05 Score=87.21 Aligned_cols=43 Identities=16% Similarity=0.329 Sum_probs=38.2
Q ss_pred CccccceeEEecCCcE--EEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 040099 400 EQILNGFCLLIPNGTI--AALVGTSGSGKSTVISLIQRFYDPQAG 442 (1236)
Q Consensus 400 ~~~l~~i~~~i~~g~~--~~ivG~sGsGKSTl~~ll~~~~~~~~G 442 (1236)
..+++.++..++.|+. +.+.||+|+||||+++.+++...+..+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 3588999999999998 999999999999999999998766554
No 387
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.23 E-value=0.0011 Score=71.80 Aligned_cols=118 Identities=20% Similarity=0.210 Sum_probs=59.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHHhhhchHHHhh
Q 040099 1041 TIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGL 1120 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~~~~i~~l 1120 (1236)
+|+|||++|+|||||++.|+|-..+.+|..... ... + .....+.-+ + .... +
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~-~t~---~-----~~~~~~~~~-----~-------~~i~---l---- 82 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGTAAKS-ITK---K-----CEKRSSSWK-----E-------TELV---V---- 82 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--------CC---S-----CEEEEEEET-----T-------EEEE---E----
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCCCCCc-eee---e-----EEEEEEEeC-----C-------ceEE---E----
Confidence 689999999999999999998766555432100 000 0 000000000 0 0000 0
Q ss_pred hhchhhhhcCCCCCCChhHHHHHHHHHHH---ccCCCEEEEecCCCCCCHHHHHHHHHHHHHH---cCCCeEEEEec
Q 040099 1121 QEGYDTLVGERGVQLSGGQKQRVAIARAI---VKEPKILLLDEATSALDIESERVVQDALDQV---MVDRTTLVVAH 1191 (1236)
Q Consensus 1121 p~Gldt~vge~G~~LSGGQrQRlaLARAL---lr~p~ILlLDEaTSaLD~~te~~I~~~L~~~---~~~~TvI~IaH 1191 (1236)
+||+ |-.....|+.+.|+ .+.+.+ .++|+++|+..+.+.++......+...++.. ....++|+++|
T Consensus 83 ---iDTp-G~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 83 ---VDTP-GIFDTEVPNAETSK-EIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp ---EECC-SCC-----CHHHHH-HHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred ---EECC-CccCCCCCHHHHHH-HHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 1111 11111234444333 334433 4578999999988888887666665554322 11258888888
No 388
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.22 E-value=0.00011 Score=87.61 Aligned_cols=66 Identities=9% Similarity=0.251 Sum_probs=43.9
Q ss_pred CCCEEEEecCCCCCCH-HHHHHHHHHHHHHc-CCCeEEEEecCch-hhhh-cCEEEE-EeCCEEEEecChh
Q 040099 1152 EPKILLLDEATSALDI-ESERVVQDALDQVM-VDRTTLVVAHRLS-TIKN-AHLIAV-VSQGMIVEKGSHE 1217 (1236)
Q Consensus 1152 ~p~ILlLDEaTSaLD~-~te~~I~~~L~~~~-~~~TvI~IaHRl~-ti~~-aD~I~V-l~~G~Ive~Gt~~ 1217 (1236)
+|++|++||+..-.+. .+...+...+.... .++++|++||+.. .+.. .+++.- ++.|.+++.+.|+
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 8999999999887764 66777777877654 4678888999843 2221 122222 4567777766554
No 389
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.22 E-value=0.0014 Score=71.14 Aligned_cols=29 Identities=31% Similarity=0.292 Sum_probs=24.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcE
Q 040099 415 IAALVGTSGSGKSTVISLIQRFYDPQAGE 443 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~ 443 (1236)
.++|+|++|+|||||++.|+|...+.+|.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 68999999999999999999977666553
No 390
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.20 E-value=0.00017 Score=86.11 Aligned_cols=68 Identities=24% Similarity=0.345 Sum_probs=43.3
Q ss_pred CEEEEEcCCCCChHHHHHHHhccc------------CCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChh-hHHHH
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFY------------DPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSD-TIRAN 1106 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~------------~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreN 1106 (1236)
-+++|||++|+|||||++.|.|.. ++..|.+.++|.++.-++..-+|+...+.+|....|.. +..++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 479999999999999999999874 36789999999987766666666666777676665542 33444
Q ss_pred H
Q 040099 1107 I 1107 (1236)
Q Consensus 1107 L 1107 (1236)
+
T Consensus 261 i 261 (439)
T 1mky_A 261 I 261 (439)
T ss_dssp H
T ss_pred H
Confidence 4
No 391
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.18 E-value=0.0013 Score=72.13 Aligned_cols=46 Identities=26% Similarity=0.476 Sum_probs=31.2
Q ss_pred cccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeec
Q 040099 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEI 1077 (1236)
Q Consensus 1028 vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di 1077 (1236)
.++++++.+++| +.|+||+|+||||++++|.+.+... -+.+++.++
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~ 81 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF 81 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHH
Confidence 355666666666 9999999999999999999987532 366665544
No 392
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.18 E-value=0.00031 Score=89.86 Aligned_cols=32 Identities=22% Similarity=0.413 Sum_probs=28.6
Q ss_pred EEecCCCEEEEEcCCCCChHHHHHHHhcccCC
Q 040099 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYDP 1065 (1236)
Q Consensus 1034 ~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~ 1065 (1236)
|.+++|+.+.|+||+|||||||+++|.+.+.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 45788999999999999999999999998753
No 393
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.18 E-value=6.9e-05 Score=91.72 Aligned_cols=59 Identities=20% Similarity=0.309 Sum_probs=47.7
Q ss_pred EEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCe
Q 040099 387 LKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGV 449 (1236)
Q Consensus 387 ~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~ 449 (1236)
++++...|. +..+++++++++ +|+.++|+||||+|||||++.|.+...+..|+|.++|.
T Consensus 86 ~~~vk~~i~---~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 86 LEKVKERIL---EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp CHHHHHHHH---HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred HHHHHHHHH---HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 344444452 234788888888 89999999999999999999999999999898887763
No 394
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.18 E-value=5.7e-05 Score=96.72 Aligned_cols=47 Identities=21% Similarity=0.413 Sum_probs=38.5
Q ss_pred cceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecc
Q 040099 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQ 1078 (1236)
Q Consensus 1030 ~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~ 1078 (1236)
...++.+++|+.+.++||+|+|||||+++|.+... .+-+.+++-++.
T Consensus 502 ~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~ 548 (806)
T 1ypw_A 502 KFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELL 548 (806)
T ss_dssp TTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSST
T ss_pred HHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHhh
Confidence 34577889999999999999999999999999875 356667766653
No 395
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.15 E-value=6.5e-05 Score=86.42 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=46.5
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecc
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQ 1078 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~ 1078 (1236)
.+++++++++++|.+++|+|++|+||||+++.|.+.+.+.+|++.+-+.|..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 4789999999999999999999999999999999999888888887666654
No 396
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.15 E-value=0.00027 Score=79.76 Aligned_cols=139 Identities=17% Similarity=0.196 Sum_probs=73.6
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEEC-CeecccCChHHHhcceEEEcCCCC--CChhhH------HHHH
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLD-GVEIQKLQVKWLRQQMGVVSQEPV--LFSDTI------RANI 1107 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~id-G~di~~i~~~~lR~~i~~V~Qdp~--LF~gTI------reNL 1107 (1236)
.++.+|+|||++|+|||||++.|.+.- +.+. +.+ ....++..++++|+.. .|-+|- +..+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~-----~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l 74 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKA-----QTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAI 74 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCS-----SCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCC-----CcceeeEEEEEEECCeeEEEEECcCCCccchhhH
Confidence 344589999999999999999999852 2221 111 1112344567776642 121221 1111
Q ss_pred HHHhhhchHHHhhhhchhh---hhcCCCCCCChhHHHHHHHHHHHc--cCCCEEEEecCCCCCCHHH-HHHHHHHHHHHc
Q 040099 1108 AEMANANGFISGLQEGYDT---LVGERGVQLSGGQKQRVAIARAIV--KEPKILLLDEATSALDIES-ERVVQDALDQVM 1181 (1236)
Q Consensus 1108 ~~~a~~~~~i~~lp~Gldt---~vge~G~~LSGGQrQRlaLARALl--r~p~ILlLDEaTSaLD~~t-e~~I~~~L~~~~ 1181 (1236)
.+.. .......+. ..|. .+.. .. +|+|++ .+++++. ..|.||++ +.+|... ...+.+.+.++.
T Consensus 75 ~~~~-~~~~~~~l~-~~D~vl~Vvd~-~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~ 143 (301)
T 1ega_A 75 NRLM-NKAASSSIG-DVELVIFVVEG-TR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLA 143 (301)
T ss_dssp HHHH-TCCTTSCCC-CEEEEEEEEET-TC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHh-cCCEEEEEEeC-CC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHH
Confidence 1000 000001111 1111 1222 22 899987 4566665 67999998 6888876 455666666554
Q ss_pred C--C--CeEEEEecCchhhh
Q 040099 1182 V--D--RTTLVVAHRLSTIK 1197 (1236)
Q Consensus 1182 ~--~--~TvI~IaHRl~ti~ 1197 (1236)
+ + .++.+.||.-.-+.
T Consensus 144 ~~~~~~~~i~iSA~~g~~v~ 163 (301)
T 1ega_A 144 SQMNFLDIVPISAETGLNVD 163 (301)
T ss_dssp TTSCCSEEEECCTTTTTTHH
T ss_pred HhcCcCceEEEECCCCCCHH
Confidence 3 2 24445577766554
No 397
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.15 E-value=0.00018 Score=83.82 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=26.4
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhcccCCC
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQRFYDPS 1066 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~ 1066 (1236)
+++..+.|.||+|+|||||++.+.+...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 567889999999999999999999887554
No 398
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.13 E-value=0.00025 Score=80.52 Aligned_cols=107 Identities=12% Similarity=0.116 Sum_probs=67.6
Q ss_pred CccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHH
Q 040099 400 EQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRD 479 (1236)
Q Consensus 400 ~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 479 (1236)
.+.|+++.--+++|+.+.|.|++|+|||||+.-++.-.-. .| ..+.|++=|
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g------------------~~vl~~slE---------- 105 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND------------------DVVNLHSLE---------- 105 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT------------------CEEEEEESS----------
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------------------CeEEEEECC----------
Confidence 3468887767999999999999999999999877642211 11 134444322
Q ss_pred HHhcCCCCCCHHHHHHHHHH--hccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCC
Q 040099 480 NIAYGKTHATKEEIQAAAEA--ANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSA 553 (1236)
Q Consensus 480 ni~~g~~~~~~~~~~~~~~~--~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~ 553 (1236)
.+.+++.+-+.. .++. +.++-.|. ..||++++||++.|...+.++++++.|+|...
T Consensus 106 --------~s~~~l~~R~~~~~~~i~--~~~l~~~~--------~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~ 163 (315)
T 3bh0_A 106 --------MGKKENIKRLIVTAGSIN--AQKIKAAR--------RDFASEDWGKLSMAIGEISNSNINIFDKAGQS 163 (315)
T ss_dssp --------SCHHHHHHHHHHHHTTCC--HHHHHSCH--------HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB
T ss_pred --------CCHHHHHHHHHHHHcCCC--HHHHhcCC--------CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 233333322211 1111 00010110 12899999999999999999999999998644
No 399
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.12 E-value=0.00028 Score=84.12 Aligned_cols=69 Identities=28% Similarity=0.294 Sum_probs=43.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC------------CCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCch-hHHHHH
Q 040099 415 IAALVGTSGSGKSTVISLIQRFYD------------PQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNI 481 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~~------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~~ni 481 (1236)
.++|+|++|+|||||++.|+|... |.+|.+.++|.++.-++....++..++.+|....|.. +..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 799999999999999999999853 7789999999877655555555556666666555532 444555
Q ss_pred hc
Q 040099 482 AY 483 (1236)
Q Consensus 482 ~~ 483 (1236)
..
T Consensus 262 ~~ 263 (439)
T 1mky_A 262 EK 263 (439)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 400
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.08 E-value=0.00026 Score=79.83 Aligned_cols=142 Identities=15% Similarity=0.125 Sum_probs=74.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEE-CCeecCCCCHHHHhcceEEEccCCC--CCchhHHHHHhcCCCCC
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLI-DGVNLKEFQLKWIREKIGLVSQEPV--LLSSSIRDNIAYGKTHA 488 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~-~g~~~~~~~~~~~r~~i~~v~Q~~~--l~~~ti~~ni~~g~~~~ 488 (1236)
++.+++|+|++|+|||||++.|.|.- +.+ .+.+- ...++..+++.++.. .|-+| |..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~-----tTr~~~~gi~~~~~~~i~~iDT---------pG~ 66 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQ-----TTRHRIVGIHTEGAYQAIYVDT---------PGL 66 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSS-----CCSSCEEEEEEETTEEEEEESS---------SSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCC-----cceeeEEEEEEECCeeEEEEEC---------cCC
Confidence 44589999999999999999999863 211 11110 111334677877643 12222 111
Q ss_pred CHHHHHHHHHHhccHHHHHhCCC---Ccccc--ccCCCCCCChHHHHHHHHHHHhc--CCCCEEEEeCcCCCCCHHH-HH
Q 040099 489 TKEEIQAAAEAANASHFIKNLPQ---GLDTN--VGEHGIQLSGGQKQRVAIARAMI--KDPRILLLDEATSALDSES-GR 560 (1236)
Q Consensus 489 ~~~~~~~~~~~~~~~~~i~~l~~---g~~t~--~g~~g~~LSgGqkqRiaiARal~--~~p~ililDE~ts~lD~~~-~~ 560 (1236)
.. +....... ++...... ..|-. +-+... +|+|++ .+++++. ..|.++++ +-+|... ..
T Consensus 67 ~~-~~~~~l~~----~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~ 133 (301)
T 1ega_A 67 HM-EEKRAINR----LMNKAASSSIGDVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKA 133 (301)
T ss_dssp CH-HHHHHHHH----HHTCCTTSCCCCEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHH
T ss_pred Cc-cchhhHHH----HHHHHHHHHHhcCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHH
Confidence 10 00111100 11111111 12221 112222 999986 5566665 68889998 7888765 55
Q ss_pred HHHHHHHHHcc--C--ceEEEEecCchhHh
Q 040099 561 MVQEALDRVMI--N--RTTVIVSHRLSLIR 586 (1236)
Q Consensus 561 ~i~~~l~~~~~--~--~t~i~itH~~~~~~ 586 (1236)
.+.+.+.++.+ + ..+.+.+|.-.-+.
T Consensus 134 ~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~ 163 (301)
T 1ega_A 134 DLLPHLQFLASQMNFLDIVPISAETGLNVD 163 (301)
T ss_dssp HHHHHHHHHHTTSCCSEEEECCTTTTTTHH
T ss_pred HHHHHHHHHHHhcCcCceEEEECCCCCCHH
Confidence 56666666543 2 24555666654443
No 401
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.08 E-value=0.00012 Score=77.71 Aligned_cols=53 Identities=19% Similarity=0.229 Sum_probs=37.3
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcccCC-CCcEE----------EECCeecccCChHHHhc
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDP-SSGHI----------TLDGVEIQKLQVKWLRQ 1087 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~-~~G~I----------~idG~di~~i~~~~lR~ 1087 (1236)
+..+|..++|+|||||||||+.+.|...++. ..+.+ .+||.|..-++.+.+++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~ 71 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFER 71 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHH
Confidence 4578999999999999999999999887742 12222 24566665566666554
No 402
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.06 E-value=8.7e-05 Score=85.35 Aligned_cols=50 Identities=24% Similarity=0.290 Sum_probs=44.1
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCee
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVN 450 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~ 450 (1236)
.+++++++++++|.+++|+|++|+|||||++.|++.+.+..|++.+-+.|
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d 93 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD 93 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence 47899999999999999999999999999999999998888877664443
No 403
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.03 E-value=0.00067 Score=73.49 Aligned_cols=137 Identities=15% Similarity=0.209 Sum_probs=72.9
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCc-hhHHHHHhcCCCC
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLS-SSIRDNIAYGKTH 487 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~ni~~g~~~ 487 (1236)
.+.+|+.++++|||||||||++.++........|. ...++++.+.|.... .++.+|+......
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 34579999999999999999887764322111111 134677777776443 3677777532111
Q ss_pred CCHHHHHHHHHHhccHHHHHhCCCCccccccCCC---CCCChHHHHHHHHHHHhcCCCCEEEEeCcCC-CCCHHHHHHHH
Q 040099 488 ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHG---IQLSGGQKQRVAIARAMIKDPRILLLDEATS-ALDSESGRMVQ 563 (1236)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g---~~LSgGqkqRiaiARal~~~p~ililDE~ts-~lD~~~~~~i~ 563 (1236)
.. ...++.. ...+....... .-.+.|.-.+.. +.-+++-+++|+||+=. ++|........
T Consensus 136 ~~-------~~~~g~~-------~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l 199 (235)
T 3llm_A 136 EP-------GKSCGYS-------VRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVL 199 (235)
T ss_dssp CT-------TSSEEEE-------ETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHH
T ss_pred cc-------CceEEEe-------echhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHH
Confidence 00 0000000 00011111000 112456655553 44689999999999976 57776654444
Q ss_pred HHHHHHccC-ceEEE
Q 040099 564 EALDRVMIN-RTTVI 577 (1236)
Q Consensus 564 ~~l~~~~~~-~t~i~ 577 (1236)
+.+.....+ +++++
T Consensus 200 ~~i~~~~~~~~~il~ 214 (235)
T 3llm_A 200 RDVVQAYPEVRIVLM 214 (235)
T ss_dssp HHHHHHCTTSEEEEE
T ss_pred HHHHhhCCCCeEEEE
Confidence 444443334 34444
No 404
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.02 E-value=0.0021 Score=70.50 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=28.9
Q ss_pred cccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCe
Q 040099 402 ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGV 449 (1236)
Q Consensus 402 ~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~ 449 (1236)
.++++++..++| +.|+||+|+||||+++.+.+.+... -+.+++.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~ 79 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGS 79 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSC
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHH
Confidence 344555555555 8999999999999999999876422 3555543
No 405
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.01 E-value=0.00031 Score=73.30 Aligned_cols=49 Identities=22% Similarity=0.474 Sum_probs=29.3
Q ss_pred cccceeEEecCCCEEEEEcCCCCChHHHHHHHhc----ccC----CCCcEEEECCeec
Q 040099 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQR----FYD----PSSGHITLDGVEI 1077 (1236)
Q Consensus 1028 vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r----~~~----~~~G~I~idG~di 1077 (1236)
++++++++.++. +|+++|++|+|||||++.+.+ -|. ++.+.+.++|..+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~ 69 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKF 69 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEE
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEE
Confidence 689999998887 899999999999999999987 222 3356677777544
No 406
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.01 E-value=0.00012 Score=78.09 Aligned_cols=44 Identities=39% Similarity=0.354 Sum_probs=38.9
Q ss_pred EEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCc--EEEECCeec
Q 040099 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG--HITLDGVEI 1077 (1236)
Q Consensus 1034 ~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G--~I~idG~di 1077 (1236)
+.+++|..+.|+|++||||||+.+.|.+.+.|..| .+.+||.++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 45788999999999999999999999999987888 888986544
No 407
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.00 E-value=0.00024 Score=76.79 Aligned_cols=47 Identities=21% Similarity=0.190 Sum_probs=34.3
Q ss_pred ccceeEEec---CCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCee
Q 040099 1029 FRDLCLTIP---PGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVE 1076 (1236)
Q Consensus 1029 L~~is~~I~---~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~d 1076 (1236)
|.++|+++. +|..++|.|++||||||+++.|...+.+ .+.+.....+
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~p 62 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREP 62 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEECTT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeecCC
Confidence 666666665 8999999999999999999999999988 7777654433
No 408
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.00 E-value=0.00019 Score=75.58 Aligned_cols=42 Identities=19% Similarity=0.418 Sum_probs=31.6
Q ss_pred EEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHc
Q 040099 391 NFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 391 ~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
+++|++ -.++++++|++.+++ .++++|++|+|||||++.+.+
T Consensus 6 ~~~~~~--~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSG--FSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHH--HHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 456764 346899999998887 589999999999999999986
No 409
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.00 E-value=0.00018 Score=82.84 Aligned_cols=43 Identities=23% Similarity=0.408 Sum_probs=37.3
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeeccc
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQK 1079 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~ 1079 (1236)
+++.+|+|+|++|||||||++.|.+.+.+.+|+|.+.+.|...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 4568899999999999999999999998899999988877654
No 410
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.00 E-value=0.0016 Score=73.15 Aligned_cols=49 Identities=27% Similarity=0.368 Sum_probs=43.7
Q ss_pred cc-eeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeeccc
Q 040099 1030 RD-LCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQK 1079 (1236)
Q Consensus 1030 ~~-is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~ 1079 (1236)
++ ++|+.+ |+.++++|++|+||||++..|.+.+.+..|++.+.+.|+..
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 45 788877 99999999999999999999999999889999998888754
No 411
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.99 E-value=0.0021 Score=73.99 Aligned_cols=149 Identities=14% Similarity=0.192 Sum_probs=81.6
Q ss_pred ccccee--EEecCCCEEEEEcCCCCChHHHHHHHhcccCCCC-cEEEECCeecccCChHHHhcceEEEcCCCCCChhhHH
Q 040099 1028 VFRDLC--LTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS-GHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIR 1104 (1236)
Q Consensus 1028 vL~~is--~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~-G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIr 1104 (1236)
.|+.+- =-+++|+.+.|.|++|||||||+..+..-..... ..++||.... .+...
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s--~~~~~-------------------- 107 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA--LDPIY-------------------- 107 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC--CCHHH--------------------
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC--ccHHH--------------------
Confidence 455552 1388999999999999999999977765432222 2344554211 01100
Q ss_pred HHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHc--cCCCEEEEecCCCCCC-HH------------H
Q 040099 1105 ANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIV--KEPKILLLDEATSALD-IE------------S 1169 (1236)
Q Consensus 1105 eNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALl--r~p~ILlLDEaTSaLD-~~------------t 1169 (1236)
.+..+.+ ++.+. +.. .. + ..|.+.++|.+. .+++++|+|++++-.. .+ .
T Consensus 108 ---a~~~g~~------~~~l~--i~~-~~--~--~e~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q 171 (356)
T 1u94_A 108 ---ARKLGVD------IDNLL--CSQ-PD--T--GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLA 171 (356)
T ss_dssp ---HHHTTCC------GGGCE--EEC-CS--S--HHHHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHH
T ss_pred ---HHHcCCC------hhhee--eeC-CC--C--HHHHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHH
Confidence 1111110 00000 111 00 1 245567777775 5799999999998764 21 1
Q ss_pred HHHHHHHHHHHc-----CCCeEEEEecCch----------------hhh-hcCEEEEEeCCEEEEec
Q 040099 1170 ERVVQDALDQVM-----VDRTTLVVAHRLS----------------TIK-NAHLIAVVSQGMIVEKG 1214 (1236)
Q Consensus 1170 e~~I~~~L~~~~-----~~~TvI~IaHRl~----------------ti~-~aD~I~Vl~~G~Ive~G 1214 (1236)
++.+.+.++++. .++|||++.|-.. .+. .+|.++.+...++...|
T Consensus 172 ~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg~~~~~~gG~~l~~~advrl~l~r~~~~k~g 238 (356)
T 1u94_A 172 ARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEG 238 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEEC--------------CTTCSHHHHHCSEEEEEEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCCcceeeeccEEEEEEEeeeeccC
Confidence 123444444331 3789999988532 233 47888887765544333
No 412
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.99 E-value=0.00021 Score=77.13 Aligned_cols=43 Identities=26% Similarity=0.308 Sum_probs=31.7
Q ss_pred ccceeEEec---CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEE
Q 040099 403 LNGFCLLIP---NGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLI 446 (1236)
Q Consensus 403 l~~i~~~i~---~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~ 446 (1236)
|.++|+.+. +|.+++|.|++||||||+++.|...+.+ .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 566666665 8999999999999999999999999987 666643
No 413
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.98 E-value=0.00028 Score=72.36 Aligned_cols=33 Identities=33% Similarity=0.376 Sum_probs=28.4
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECC
Q 040099 1038 PGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDG 1074 (1236)
Q Consensus 1038 ~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG 1074 (1236)
.|+.++|+|++||||||++++|.+.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4788999999999999999999998754 56664
No 414
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.97 E-value=0.00033 Score=81.50 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=26.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q 040099 411 PNGTIAALVGTSGSGKSTVISLIQRFYDPQA 441 (1236)
Q Consensus 411 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~ 441 (1236)
+++..+.|.||+|+|||||++.+.+...+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999998775543
No 415
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.97 E-value=0.00012 Score=77.99 Aligned_cols=43 Identities=30% Similarity=0.273 Sum_probs=37.8
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCc--EEEECCee
Q 040099 408 LLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG--EVLIDGVN 450 (1236)
Q Consensus 408 ~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G--~i~~~g~~ 450 (1236)
+.+++|.+++|+|++||||||+.+.|.+.+.|..| .+.++|.+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 55788999999999999999999999999988888 88887543
No 416
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.94 E-value=0.00032 Score=71.83 Aligned_cols=33 Identities=27% Similarity=0.317 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECC
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDG 448 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 448 (1236)
.|++++|+||+||||||++++|.+.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999998753 45553
No 417
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.94 E-value=0.0034 Score=72.16 Aligned_cols=36 Identities=28% Similarity=0.306 Sum_probs=29.1
Q ss_pred ccccceeEE---ecCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 401 QILNGFCLL---IPNGTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 401 ~~l~~i~~~---i~~g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
+.|+.+ +. +++|+++.|.||+|+|||||+..++...
T Consensus 49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456665 33 8899999999999999999997776543
No 418
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.92 E-value=0.0012 Score=75.03 Aligned_cols=35 Identities=6% Similarity=0.088 Sum_probs=30.7
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHhc
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
+.|+++.--+++|+.+.|.|++|+||||++.-+..
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 45888887799999999999999999999877764
No 419
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.92 E-value=0.00043 Score=70.96 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=23.5
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccc
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
++|.+++|||++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999999864
No 420
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.86 E-value=0.001 Score=75.04 Aligned_cols=31 Identities=16% Similarity=0.288 Sum_probs=26.9
Q ss_pred CEEEEEcCCCCChHHHHHHHhcccCCCCcEE
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFYDPSSGHI 1070 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I 1070 (1236)
..+.|+||+|+||||+++.|.+...+.+|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5789999999999999999999987766643
No 421
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.85 E-value=0.00028 Score=81.35 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=35.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeec
Q 040099 411 PNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNL 451 (1236)
Q Consensus 411 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~ 451 (1236)
+++.+++|+|++|||||||++.|.|.+.+.+|+|.+.+.|.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecC
Confidence 45789999999999999999999999999989887766554
No 422
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.84 E-value=7.9e-05 Score=80.32 Aligned_cols=69 Identities=19% Similarity=0.275 Sum_probs=44.9
Q ss_pred CCEEEEEcCCCCChHHHHHHHhc---ccCCCCcEE--------EECCeecccCC-hHHHhcceEEEc------CCCCCCh
Q 040099 1039 GKTIALVGESGSGKSTVISLLQR---FYDPSSGHI--------TLDGVEIQKLQ-VKWLRQQMGVVS------QEPVLFS 1100 (1236)
Q Consensus 1039 Ge~vaIVG~SGSGKSTL~~lL~r---~~~~~~G~I--------~idG~di~~i~-~~~lR~~i~~V~------Qdp~LF~ 1100 (1236)
.-.++|+||+||||||+.+.|.+ +.-.+.|.+ .-.|+|..+.. ...+.+.+.+.. |+.+|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 35899999999999999999984 434455655 23466665542 445556666655 3445555
Q ss_pred hhHHHHH
Q 040099 1101 DTIRANI 1107 (1236)
Q Consensus 1101 gTIreNL 1107 (1236)
..|.+||
T Consensus 89 ~~v~~~i 95 (233)
T 3r20_A 89 EDVSSEI 95 (233)
T ss_dssp EECTTGG
T ss_pred eehhhhh
Confidence 5565555
No 423
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.83 E-value=0.0025 Score=75.96 Aligned_cols=168 Identities=14% Similarity=0.222 Sum_probs=94.9
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCc-EE-EECCeecccCChHHHhcce----EEEcCCCCCCh
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG-HI-TLDGVEIQKLQVKWLRQQM----GVVSQEPVLFS 1100 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G-~I-~idG~di~~i~~~~lR~~i----~~V~Qdp~LF~ 1100 (1236)
+.|+.+.--+++|+.+.|.||+|+||||++.-+..-.....| .+ +++. +.+.+.+..++ +-++.+. +-+
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl----E~~~~~l~~R~~~~~~~i~~~~-l~~ 262 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL----EMPAAQLTLRMMCSEARIDMNR-VRL 262 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES----SSCHHHHHHHHHHHHTTCCTTT-CCG
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC----CCCHHHHHHHHHHHHcCCCHHH-HhC
Confidence 357777767999999999999999999999887765533223 33 3332 35556665543 1233322 223
Q ss_pred hhHHH-HHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHc--cCCCEEEEecCCCCCCH------HH-H
Q 040099 1101 DTIRA-NIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIV--KEPKILLLDEATSALDI------ES-E 1170 (1236)
Q Consensus 1101 gTIre-NL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALl--r~p~ILlLDEaTSaLD~------~t-e 1170 (1236)
|.+.+ ...+...+.+.+...| -.+.+. ..+|..+ ..+.+|.+. .+++++++|..+.-.+. ++ .
T Consensus 263 g~l~~~~~~~~~~a~~~l~~~~----l~i~d~-~~~s~~~--l~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~ 335 (444)
T 2q6t_A 263 GQLTDRDFSRLVDVASRLSEAP----IYIDDT-PDLTLME--VRARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQ 335 (444)
T ss_dssp GGCCHHHHHHHHHHHHHHHTSC----EEEECC-TTCBHHH--HHHHHHHHHHHSCCCEEEEECGGGCBCC-------CHH
T ss_pred CCCCHHHHHHHHHHHHHHhcCC----EEEECC-CCCCHHH--HHHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHH
Confidence 32211 1111111111222111 112121 2456554 456777776 37999999998875543 11 1
Q ss_pred ---HHHHHHHHHHc--CCCeEEEEec--C-----------ch------hh-hhcCEEEEEe
Q 040099 1171 ---RVVQDALDQVM--VDRTTLVVAH--R-----------LS------TI-KNAHLIAVVS 1206 (1236)
Q Consensus 1171 ---~~I~~~L~~~~--~~~TvI~IaH--R-----------l~------ti-~~aD~I~Vl~ 1206 (1236)
..+.+.|+.+. .+++||+++| | ++ .+ ..||.|+.|.
T Consensus 336 ~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 336 QEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 23445555543 2789999998 1 11 23 3599999995
No 424
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.80 E-value=0.00022 Score=75.56 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=26.4
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQRFYD 438 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~ 438 (1236)
+..+|.+++|+|||||||||+.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456899999999999999999999988763
No 425
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.80 E-value=0.00079 Score=70.88 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=23.6
Q ss_pred CEEEEEcCCCCChHHHHHHHhcccCCC
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFYDPS 1066 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~~~~ 1066 (1236)
..+.|.||+|+|||||++.+.......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999998876543
No 426
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.78 E-value=0.0026 Score=71.66 Aligned_cols=39 Identities=18% Similarity=0.397 Sum_probs=31.1
Q ss_pred eEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEEC
Q 040099 1033 CLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLD 1073 (1236)
Q Consensus 1033 s~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~id 1073 (1236)
++.++++..+.|.||+|+|||||++.+.+... .+-+.++
T Consensus 43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~ 81 (301)
T 3cf0_A 43 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIK 81 (301)
T ss_dssp HHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEEC
T ss_pred HcCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEE
Confidence 34578899999999999999999999998763 3444444
No 427
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.76 E-value=0.0014 Score=74.72 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQRFYDPQ 440 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~ 440 (1236)
++..+.|.||+|+|||||++.+.+...+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 45689999999999999999999866443
No 428
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.75 E-value=8.1e-05 Score=80.23 Aligned_cols=70 Identities=17% Similarity=0.242 Sum_probs=42.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHH---cCCCCCCcEEE--------ECCeecCCCC-HHHHhcceEEEc------cCCCCCc
Q 040099 413 GTIAALVGTSGSGKSTVISLIQ---RFYDPQAGEVL--------IDGVNLKEFQ-LKWIREKIGLVS------QEPVLLS 474 (1236)
Q Consensus 413 g~~~~ivG~sGsGKSTl~~ll~---~~~~~~~G~i~--------~~g~~~~~~~-~~~~r~~i~~v~------Q~~~l~~ 474 (1236)
.-+++|+||+||||||+.+.|. |+...+.|.++ -.|.++.+.. ...+.+.+.+.+ |..+|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 4589999999999999999998 44444555552 2355444432 334555566665 3334444
Q ss_pred hhHHHHHh
Q 040099 475 SSIRDNIA 482 (1236)
Q Consensus 475 ~ti~~ni~ 482 (1236)
..|.++|+
T Consensus 89 ~~v~~~ir 96 (233)
T 3r20_A 89 EDVSSEIR 96 (233)
T ss_dssp EECTTGGG
T ss_pred eehhhhhc
Confidence 45555443
No 429
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.73 E-value=0.00085 Score=67.18 Aligned_cols=30 Identities=30% Similarity=0.558 Sum_probs=24.8
Q ss_pred cceeEEecCCcEEEEEcCCCCcHHHHHHHHH
Q 040099 404 NGFCLLIPNGTIAALVGTSGSGKSTVISLIQ 434 (1236)
Q Consensus 404 ~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~ 434 (1236)
++.++++.+| +.+|+|||||||||++..|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4455666655 89999999999999999986
No 430
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.70 E-value=0.0019 Score=77.35 Aligned_cols=58 Identities=10% Similarity=0.087 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhh
Q 040099 1137 GGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTI 1196 (1236)
Q Consensus 1137 GGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti 1196 (1236)
+.|++....++..+++++++|+......-....+..+.+.+++ .++.+|+|.++.+..
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH--cCCCEEEEEECccch
Confidence 3588888999999999998877665544344445566666654 478899999988765
No 431
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.70 E-value=0.0012 Score=71.20 Aligned_cols=28 Identities=21% Similarity=0.164 Sum_probs=24.9
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhcccCC
Q 040099 1038 PGKTIALVGESGSGKSTVISLLQRFYDP 1065 (1236)
Q Consensus 1038 ~Ge~vaIVG~SGSGKSTL~~lL~r~~~~ 1065 (1236)
++..+.|+||+|+||||+++.+.+....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999876643
No 432
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.69 E-value=0.00097 Score=69.47 Aligned_cols=34 Identities=21% Similarity=0.472 Sum_probs=20.7
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHc
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
.++++++++.++. .++++|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 3789999998877 789999999999999999987
No 433
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.68 E-value=0.0016 Score=68.59 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=23.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 040099 414 TIAALVGTSGSGKSTVISLIQRFYDPQ 440 (1236)
Q Consensus 414 ~~~~ivG~sGsGKSTl~~ll~~~~~~~ 440 (1236)
..+.|.||+|+|||||++.+.......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 789999999999999999998866443
No 434
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.68 E-value=0.0034 Score=69.89 Aligned_cols=28 Identities=32% Similarity=0.446 Sum_probs=24.8
Q ss_pred ecCCCEEEEEcCCCCChHHHHHHHhccc
Q 040099 1036 IPPGKTIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1036 I~~Ge~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
++++..+-|.||+|+||||+++.+.+.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4677789999999999999999998765
No 435
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.67 E-value=0.0027 Score=71.44 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=27.1
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 408 LLIPNGTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 408 ~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
+.++++..+.|.||+|+|||||++.+.+..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 456889999999999999999999999876
No 436
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.59 E-value=0.0009 Score=72.15 Aligned_cols=28 Identities=18% Similarity=0.108 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQRFYDP 439 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~ 439 (1236)
++..+.|.||+|+||||+++.+......
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999876543
No 437
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.56 E-value=0.0014 Score=67.15 Aligned_cols=27 Identities=19% Similarity=0.377 Sum_probs=23.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 411 PNGTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 411 ~~g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
++|..++|+|++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
No 438
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.55 E-value=0.0045 Score=69.71 Aligned_cols=32 Identities=13% Similarity=0.139 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEE
Q 040099 413 GTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444 (1236)
Q Consensus 413 g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i 444 (1236)
...+.|+||+|+||||+++.|.+...+..|.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 35789999999999999999999887766644
No 439
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.51 E-value=0.0013 Score=70.50 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=33.8
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhh
Q 040099 1151 KEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTI 1196 (1236)
Q Consensus 1151 r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti 1196 (1236)
.+|.+|++||+-. +|.+....+.+.+.+...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 3578999999876 78887777777776544456788888887644
No 440
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.48 E-value=0.0046 Score=68.80 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=24.7
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 410 IPNGTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 410 i~~g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
++++.-+.|.||+|+||||+++.+++.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567789999999999999999998865
No 441
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.44 E-value=0.0002 Score=75.45 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 040099 1041 TIALVGESGSGKSTVISLLQRF 1062 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~ 1062 (1236)
.++|+|++||||||+.+.|.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999984
No 442
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.43 E-value=0.0013 Score=68.34 Aligned_cols=32 Identities=22% Similarity=0.450 Sum_probs=26.8
Q ss_pred ceeEEecCCCEEEEEcCCCCChHHHHHHHhcc
Q 040099 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRF 1062 (1236)
Q Consensus 1031 ~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~ 1062 (1236)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999999999999876
No 443
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.43 E-value=0.00051 Score=79.08 Aligned_cols=43 Identities=12% Similarity=0.275 Sum_probs=33.6
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchh
Q 040099 1152 EPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLST 1195 (1236)
Q Consensus 1152 ~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~t 1195 (1236)
+++|+++|| ...++......+.+.+.+...+..+|+++++.+.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 668999999 6778888888888888876555567777877654
No 444
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.42 E-value=0.0078 Score=59.66 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=25.5
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhcccCCCCc
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQRFYDPSSG 1068 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G 1068 (1236)
+.+.-|-|.|++|+|||++++.|........+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~ 53 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQG 53 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccCC
Confidence 44566899999999999999999887644333
No 445
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.42 E-value=0.00063 Score=78.30 Aligned_cols=43 Identities=9% Similarity=0.258 Sum_probs=33.0
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchh
Q 040099 541 DPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSL 584 (1236)
Q Consensus 541 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~ 584 (1236)
++.|+++|| ...+++.....+.+.+.+...+..+|+++++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 667999999 6788988888888888876555556777776653
No 446
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.39 E-value=0.00055 Score=76.88 Aligned_cols=48 Identities=23% Similarity=0.279 Sum_probs=41.9
Q ss_pred cc-eeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecC
Q 040099 404 NG-FCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLK 452 (1236)
Q Consensus 404 ~~-i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~ 452 (1236)
++ ++++.+ |++++++|++|+||||++..|++.+.+..|+|.+.+.|..
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 45 777776 9999999999999999999999999998899988776654
No 447
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.39 E-value=0.0019 Score=64.67 Aligned_cols=34 Identities=26% Similarity=0.519 Sum_probs=26.3
Q ss_pred cceeEEecCCCEEEEEcCCCCChHHHHHHHh-cccC
Q 040099 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQ-RFYD 1064 (1236)
Q Consensus 1030 ~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~-r~~~ 1064 (1236)
++.++++.+| ..+|+||||||||||+.+|. .++.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4455666665 88999999999999999986 3443
No 448
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.39 E-value=0.0015 Score=67.81 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=26.7
Q ss_pred ceeEEecCCcEEEEEcCCCCcHHHHHHHHHcC
Q 040099 405 GFCLLIPNGTIAALVGTSGSGKSTVISLIQRF 436 (1236)
Q Consensus 405 ~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~ 436 (1236)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999875
No 449
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.39 E-value=0.00059 Score=70.90 Aligned_cols=43 Identities=30% Similarity=0.396 Sum_probs=35.3
Q ss_pred EEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEE-EECCee
Q 040099 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI-TLDGVE 1076 (1236)
Q Consensus 1034 ~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I-~idG~d 1076 (1236)
+..++|..+.|+|++||||||+.+.|.+.+.+.+|.+ .+|+-+
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 4456899999999999999999999999988777765 455433
No 450
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.38 E-value=0.0031 Score=71.74 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhcccCC
Q 040099 1038 PGKTIALVGESGSGKSTVISLLQRFYDP 1065 (1236)
Q Consensus 1038 ~Ge~vaIVG~SGSGKSTL~~lL~r~~~~ 1065 (1236)
++..+.|.||+|+|||||++.+.+....
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3467999999999999999999987644
No 451
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.36 E-value=0.0016 Score=75.47 Aligned_cols=41 Identities=24% Similarity=0.391 Sum_probs=34.8
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcc-----------cCCCCcEEEECCe
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRF-----------YDPSSGHITLDGV 1075 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~-----------~~~~~G~I~idG~ 1075 (1236)
.++.|.+++|||++|+|||||++.|.+. .+|..|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 5678899999999999999999999998 6788899888764
No 452
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.33 E-value=0.0042 Score=67.77 Aligned_cols=58 Identities=9% Similarity=0.103 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHc---cCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC----CCeEEEEecCchh
Q 040099 1137 GGQKQRVAIARAIV---KEPKILLLDEATSALDIESERVVQDALDQVMV----DRTTLVVAHRLST 1195 (1236)
Q Consensus 1137 GGQrQRlaLARALl---r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~----~~TvI~IaHRl~t 1195 (1236)
.|++.+-.+.|++. ++++++|+--..+.++.. +..+.+.+.+.+. ++++|+++|..+.
T Consensus 87 ~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~-~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 87 KTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQ-DQQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHH-HHHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred cHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHH-HHHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 34555666777774 888877765544455544 4455555655542 5789999997654
No 453
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.29 E-value=0.00046 Score=79.92 Aligned_cols=56 Identities=30% Similarity=0.268 Sum_probs=36.4
Q ss_pred ccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEE
Q 040099 1007 VMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHIT 1071 (1236)
Q Consensus 1007 ~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~ 1071 (1236)
..|.|.|++++..|.. ..++++++|+| +|||++|+|||||++.|++...+..|.+.
T Consensus 14 ~~~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~ 69 (361)
T 2qag_A 14 TPGYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIP 69 (361)
T ss_dssp -------CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-------
T ss_pred CCceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCccc
Confidence 3567899999988863 34789999987 99999999999999999887555555443
No 454
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.29 E-value=0.0025 Score=64.53 Aligned_cols=24 Identities=38% Similarity=0.481 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCChHHHHHHHhccc
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
-+++|+|++|+|||||++.|.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999864
No 455
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.25 E-value=0.011 Score=58.44 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=25.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 040099 411 PNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442 (1236)
Q Consensus 411 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G 442 (1236)
+.+.-+.|.||+|+|||++++.|........+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~ 53 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQG 53 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccCC
Confidence 45667899999999999999999886644333
No 456
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.21 E-value=0.0015 Score=71.58 Aligned_cols=43 Identities=26% Similarity=0.430 Sum_probs=35.9
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeeccc
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQK 1079 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~ 1079 (1236)
..+++..+.|+|++||||||+.+.|.+.+. .|.+.+||-+++.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r~ 70 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFRS 70 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGGT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHHH
Confidence 456778999999999999999999998875 3678889876654
No 457
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.21 E-value=0.0016 Score=67.51 Aligned_cols=39 Identities=28% Similarity=0.498 Sum_probs=32.9
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEE-EEC
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV-LID 447 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i-~~~ 447 (1236)
..++|.++.|+|++||||||+.+.|.+.+.+..|.+ .++
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 345799999999999999999999999887777765 344
No 458
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.16 E-value=0.023 Score=66.76 Aligned_cols=35 Identities=26% Similarity=0.510 Sum_probs=28.2
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEE
Q 040099 1038 PGKTIALVGESGSGKSTVISLLQRFYDPSSGHITL 1072 (1236)
Q Consensus 1038 ~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~i 1072 (1236)
++..++++|++|+||||++.-|.+.+....-++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 45789999999999999999999888654445544
No 459
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.15 E-value=0.0018 Score=69.52 Aligned_cols=45 Identities=13% Similarity=0.142 Sum_probs=32.8
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhH
Q 040099 540 KDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLI 585 (1236)
Q Consensus 540 ~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 585 (1236)
.+|.++++||+-. +|......+.+.+.+...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 4678999999866 78887777777776544456777788876543
No 460
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.15 E-value=0.0022 Score=65.89 Aligned_cols=37 Identities=24% Similarity=0.278 Sum_probs=29.9
Q ss_pred CEEEEEcCCCCChHHHHHHHhcccCCC---CcEEEECCee
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFYDPS---SGHITLDGVE 1076 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~~~~---~G~I~idG~d 1076 (1236)
..++|+|+||||||||++.|.+.+.+. -|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 579999999999999999999876543 4778887654
No 461
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.12 E-value=0.0022 Score=66.18 Aligned_cols=38 Identities=29% Similarity=0.477 Sum_probs=28.8
Q ss_pred CEEEEEcCCCCChHHHHHHHhcc-----------cCCCCcEEEECCeec
Q 040099 1040 KTIALVGESGSGKSTVISLLQRF-----------YDPSSGHITLDGVEI 1077 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~-----------~~~~~G~I~idG~di 1077 (1236)
-+++|+|++|+|||||++.|.+- .++..|.+.++|..+
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 56 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKF 56 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEE
Confidence 37999999999999999999983 223456666666543
No 462
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.11 E-value=0.00054 Score=79.30 Aligned_cols=58 Identities=21% Similarity=0.220 Sum_probs=36.6
Q ss_pred CCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECC
Q 040099 382 RGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDG 448 (1236)
Q Consensus 382 ~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 448 (1236)
.+.+.++|++..|. .+.++++++|+| +|+|++|+|||||++.|.+...+..|.+..++
T Consensus 15 ~~~v~~~~l~~~~~---~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 15 PGYVGFANLPNQVH---RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp ------CCHHHHHH---THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred CceEEeccchHHhC---CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 46788999998885 245889999987 99999999999999999887666555544333
No 463
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.08 E-value=0.0027 Score=73.59 Aligned_cols=40 Identities=23% Similarity=0.343 Sum_probs=31.0
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHcC-----------CCCCCcEEEECC
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQRF-----------YDPQAGEVLIDG 448 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~-----------~~~~~G~i~~~g 448 (1236)
.+..|..++|||++|+|||||++.|.|. .+|+.|.+.+++
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 4567889999999999999999999987 455666665544
No 464
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.07 E-value=0.02 Score=60.35 Aligned_cols=44 Identities=20% Similarity=0.302 Sum_probs=31.3
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchh
Q 040099 1151 KEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLST 1195 (1236)
Q Consensus 1151 r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~t 1195 (1236)
.++.+|++||+- .++.+....+.+.+.+...+..+|+++++...
T Consensus 101 ~~~~vliiDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 144 (226)
T 2chg_A 101 APFKIIFLDEAD-ALTADAQAALRRTMEMYSKSCRFILSCNYVSR 144 (226)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred cCceEEEEeChh-hcCHHHHHHHHHHHHhcCCCCeEEEEeCChhh
Confidence 368899999974 46777777777777765445566777776653
No 465
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.06 E-value=0.0038 Score=72.54 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=24.6
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhcccC
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQRFYD 1064 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r~~~ 1064 (1236)
..+..+.|.||+|+||||+++.+.+-..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 5667899999999999999999988763
No 466
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.03 E-value=0.0018 Score=70.98 Aligned_cols=42 Identities=29% Similarity=0.426 Sum_probs=34.2
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecC
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLK 452 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~ 452 (1236)
..+++..+.|+|++||||||+.+.|.+.+. .|.+.+|+..++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r 69 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFR 69 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHH
Confidence 456788999999999999999999998774 356778875543
No 467
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.01 E-value=0.0019 Score=68.03 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=28.9
Q ss_pred CCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeec
Q 040099 1039 GKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEI 1077 (1236)
Q Consensus 1039 Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di 1077 (1236)
...++|+|++||||||+++.|.+.+ |...+|+-++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 4689999999999999999998876 5567765444
No 468
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.00 E-value=0.0052 Score=62.14 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
.++|+|++|+|||||++.+.|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 469
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.95 E-value=0.014 Score=67.35 Aligned_cols=41 Identities=20% Similarity=0.464 Sum_probs=31.7
Q ss_pred ecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCee
Q 040099 1036 IPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVE 1076 (1236)
Q Consensus 1036 I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~d 1076 (1236)
..+|..+-|.||+|+||||+++.+.+.......-+.+++..
T Consensus 67 ~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 107 (368)
T 3uk6_A 67 KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE 107 (368)
T ss_dssp CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence 34677899999999999999999998876444455555543
No 470
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.93 E-value=0.0029 Score=64.94 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=28.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCe
Q 040099 413 GTIAALVGTSGSGKSTVISLIQRFYDPQ---AGEVLIDGV 449 (1236)
Q Consensus 413 g~~~~ivG~sGsGKSTl~~ll~~~~~~~---~G~i~~~g~ 449 (1236)
-..++|+|+||||||||++.|.+.+.+. -|.|..++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 3589999999999999999999876543 355665553
No 471
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.93 E-value=0.016 Score=66.80 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=23.7
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccc
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
++...+.|.||+|+||||+++.+.+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456779999999999999999998765
No 472
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.93 E-value=0.0042 Score=65.55 Aligned_cols=30 Identities=30% Similarity=0.558 Sum_probs=24.4
Q ss_pred cceeEEecCCcEEEEEcCCCCcHHHHHHHHH
Q 040099 404 NGFCLLIPNGTIAALVGTSGSGKSTVISLIQ 434 (1236)
Q Consensus 404 ~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~ 434 (1236)
++.++++.+| +++|+|||||||||++..|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3455666654 99999999999999999875
No 473
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.91 E-value=0.002 Score=67.87 Aligned_cols=32 Identities=38% Similarity=0.480 Sum_probs=26.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECC
Q 040099 413 GTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDG 448 (1236)
Q Consensus 413 g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 448 (1236)
..+++|+|++||||||+.+.|.+.+ |...+++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeC
Confidence 5689999999999999999998876 4555554
No 474
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.86 E-value=0.0033 Score=65.25 Aligned_cols=45 Identities=31% Similarity=0.539 Sum_probs=34.1
Q ss_pred EEEEcCCCCChHHHHHHHhcccC-------------CCCcEEEECCeecccCChHHHhcc
Q 040099 1042 IALVGESGSGKSTVISLLQRFYD-------------PSSGHITLDGVEIQKLQVKWLRQQ 1088 (1236)
Q Consensus 1042 vaIVG~SGSGKSTL~~lL~r~~~-------------~~~G~I~idG~di~~i~~~~lR~~ 1088 (1236)
|.|+||||||||||++.|..-++ |..|+ +||+|.-=++.+...+.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE--~~G~dY~Fvs~~eF~~~ 61 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKSM 61 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCC--cCCceeEeecHHHHHHH
Confidence 78999999999999998865432 34565 58888877777776554
No 475
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.83 E-value=0.0044 Score=63.90 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 040099 415 IAALVGTSGSGKSTVISLIQRF 436 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~ 436 (1236)
.++++|++|+|||||++.+.+.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 476
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.81 E-value=0.01 Score=70.96 Aligned_cols=55 Identities=13% Similarity=0.164 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEeCcCC-CCCHHHHHHHHHHHHHHccCceEEEEecCch
Q 040099 526 GGQKQRVAIARAMIKDPRILLLDEATS-ALDSESGRMVQEALDRVMINRTTVIVSHRLS 583 (1236)
Q Consensus 526 gGqkqRiaiARal~~~p~ililDE~ts-~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~ 583 (1236)
+.|++....++..+.+++++|+..... ++... ..++.+.+++ .++.+|++.+..+
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l~~--~~~pvilV~NK~D 142 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKILYR--TKKPVVLAVNKLD 142 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHHTT--CCSCEEEEEECC-
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHHHH--cCCCEEEEEECcc
Confidence 358888888999999999777765544 44444 4456666644 4677888877654
No 477
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.75 E-value=0.012 Score=70.18 Aligned_cols=37 Identities=14% Similarity=0.180 Sum_probs=31.2
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
+-|+.+.--+++|+.+.|.|++|+|||||+.-++.-.
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4577776568999999999999999999998877644
No 478
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.73 E-value=0.04 Score=60.02 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=22.9
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccc
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
++..-+.|.||+|+||||+++.+.+-+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344568999999999999999998765
No 479
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.67 E-value=0.011 Score=63.14 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=34.2
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecC-----------chhhhhcCEEEEEe
Q 040099 1152 EPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHR-----------LSTIKNAHLIAVVS 1206 (1236)
Q Consensus 1152 ~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHR-----------l~ti~~aD~I~Vl~ 1206 (1236)
+++++++||+-- ++.+.-+.+ ..|.+ .+.+||++-|+ .+.+.-||+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999974 765533333 23333 38899999993 22345699998863
No 480
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.66 E-value=0.048 Score=64.01 Aligned_cols=29 Identities=34% Similarity=0.686 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQRFYDPQ 440 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~ 440 (1236)
++.+++++|++|+||||++.-|+..+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 45799999999999999999998877643
No 481
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.65 E-value=0.0052 Score=63.41 Aligned_cols=26 Identities=31% Similarity=0.590 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCC
Q 040099 1041 TIALVGESGSGKSTVISLLQRFYDPS 1066 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~~~~ 1066 (1236)
+++|||++|+|||||++.+.+...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 79999999999999999999875443
No 482
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.64 E-value=0.0022 Score=72.92 Aligned_cols=37 Identities=30% Similarity=0.363 Sum_probs=33.8
Q ss_pred ccccceeEEecCCcE--EEEEcCCCCcHHHHHHHHHcCC
Q 040099 401 QILNGFCLLIPNGTI--AALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~--~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478889999999999 9999999999999999998865
No 483
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.62 E-value=0.026 Score=65.01 Aligned_cols=138 Identities=18% Similarity=0.281 Sum_probs=75.6
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHHhhhc
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANAN 1114 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~~ 1114 (1236)
-+++|+.+.|.||+|+|||||+..+..-.....+. +.|+.=|..+ +.. + .+..+.+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~-------------------vlyi~~E~s~-~~~-~---a~~~g~d 125 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGT-------------------CAFIDAEHAL-DPV-Y---ARALGVN 125 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-------------------EEEEESSCCC-CHH-H---HHHTTCC
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCe-------------------EEEEECCCCh-hHH-H---HHHcCCC
Confidence 47999999999999999999997665433212222 3333333211 111 0 1111111
Q ss_pred hHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHcc--CCCEEEEecCCCCCC-H------------HHHHHHHHHHHH
Q 040099 1115 GFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVK--EPKILLLDEATSALD-I------------ESERVVQDALDQ 1179 (1236)
Q Consensus 1115 ~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr--~p~ILlLDEaTSaLD-~------------~te~~I~~~L~~ 1179 (1236)
. +.+ .+-.. -+ + .|.+.+++.+++ +++++|+|..++=.- . ..++.+.+.+++
T Consensus 126 --~----~~l--~i~~~---~~-~-e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~ 192 (366)
T 1xp8_A 126 --T----DEL--LVSQP---DN-G-EQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRK 192 (366)
T ss_dssp --G----GGC--EEECC---SS-H-HHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHH
T ss_pred --H----HHc--eeecC---Cc-H-HHHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHH
Confidence 0 000 01111 11 2 356677888874 589999999987541 1 122445555555
Q ss_pred H---c--CCCeEEEEecCchh----------------hh-hcCEEEEEeCCE
Q 040099 1180 V---M--VDRTTLVVAHRLST----------------IK-NAHLIAVVSQGM 1209 (1236)
Q Consensus 1180 ~---~--~~~TvI~IaHRl~t----------------i~-~aD~I~Vl~~G~ 1209 (1236)
+ . .+++||++.|=-.. +. .||.++.+..++
T Consensus 193 L~~~a~~~~~~VI~~nq~~~~~~~~fg~p~~~~gg~al~~~a~~rl~L~r~~ 244 (366)
T 1xp8_A 193 LTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIG 244 (366)
T ss_dssp HHHHHTTTCCEEEEEEEC---------------CHHHHHHHCSEEEEEEEES
T ss_pred HHHHHHHcCCEEEEEEecccccCcccCCccccCCcchhhheeeEEEEEEecc
Confidence 4 2 46888888874321 22 378888887554
No 484
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.62 E-value=0.009 Score=61.70 Aligned_cols=36 Identities=31% Similarity=0.529 Sum_probs=28.3
Q ss_pred EEEEEcCCCCChHHHHHHHh-cc----cCCCCc----EEEECCee
Q 040099 1041 TIALVGESGSGKSTVISLLQ-RF----YDPSSG----HITLDGVE 1076 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~-r~----~~~~~G----~I~idG~d 1076 (1236)
+|+|+|++|+|||||++.+. +- +.|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 69999999999999997554 43 667777 67777754
No 485
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.59 E-value=0.016 Score=65.85 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=27.2
Q ss_pred ccccee-EEecCCcEEEEEcCCCCcHHHHHHHHHc
Q 040099 402 ILNGFC-LLIPNGTIAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 402 ~l~~i~-~~i~~g~~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
.|+.+- =-+++|+++.|.||+|||||||+.-++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 444432 2578999999999999999999987764
No 486
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.56 E-value=0.0054 Score=64.49 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
+++|+|++||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 487
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.54 E-value=0.024 Score=64.32 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=24.6
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhc
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
-+++|+.+.|.||+|||||||+.-+..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999999987764
No 488
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.51 E-value=0.033 Score=64.15 Aligned_cols=27 Identities=22% Similarity=0.188 Sum_probs=23.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 411 PNGTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 411 ~~g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
++..-+.|.||+|+|||||++.++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998764
No 489
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.50 E-value=0.0063 Score=63.99 Aligned_cols=21 Identities=43% Similarity=0.710 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 040099 1041 TIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
+++|+|++||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
No 490
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.48 E-value=0.0024 Score=72.54 Aligned_cols=37 Identities=35% Similarity=0.428 Sum_probs=33.8
Q ss_pred ccccceeEEecCCCE--EEEEcCCCCChHHHHHHHhccc
Q 040099 1027 EVFRDLCLTIPPGKT--IALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~--vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
.+++.+++.+++|++ ++|+|++||||||+.++|.+.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478999999999999 9999999999999999998854
No 491
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.48 E-value=0.0065 Score=62.67 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFYDPQ 440 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~~~~ 440 (1236)
.++|+|++|+|||||++.+.+...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 68999999999999999999875443
No 492
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.47 E-value=0.044 Score=59.74 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
+..-+.|.||+|+||||+++.+.+.+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34568899999999999999998754
No 493
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.44 E-value=0.015 Score=67.06 Aligned_cols=38 Identities=21% Similarity=0.372 Sum_probs=29.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECC
Q 040099 411 PNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDG 448 (1236)
Q Consensus 411 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 448 (1236)
.+|..+.|.||+|+||||+++.+.........-+.+++
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 45778999999999999999999987764444455544
No 494
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.44 E-value=0.0084 Score=67.11 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=29.2
Q ss_pred cccceeEEecCCCEEEEEcCCCCChHHHHHHHhc
Q 040099 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1028 vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
.+++..+.+ .|.-++|+|+||+||||++..|.+
T Consensus 134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 577777777 789999999999999999998887
No 495
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.43 E-value=0.0097 Score=68.23 Aligned_cols=36 Identities=28% Similarity=0.520 Sum_probs=31.5
Q ss_pred CCEEEEEcCCCCChHHHHHHHhc-----------ccCCCCcEEEECC
Q 040099 1039 GKTIALVGESGSGKSTVISLLQR-----------FYDPSSGHITLDG 1074 (1236)
Q Consensus 1039 Ge~vaIVG~SGSGKSTL~~lL~r-----------~~~~~~G~I~idG 1074 (1236)
|-+++|||++|+|||||++.|.+ -.+|+.|.+.++|
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56899999999999999999998 4568888888876
No 496
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.43 E-value=0.026 Score=63.05 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCChHHHHHHHhccc
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
.-+.|.||+|+|||+|++.+.+-.
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457889999999999999999876
No 497
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.42 E-value=0.035 Score=63.97 Aligned_cols=28 Identities=32% Similarity=0.462 Sum_probs=24.3
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHcC
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQRF 436 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~ 436 (1236)
-+++|+++.|.||+|+|||||+.-++..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 4789999999999999999999766543
No 498
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.42 E-value=0.014 Score=65.32 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=24.9
Q ss_pred EEecCCCEEEEEcCCCCChHHHHHHHhc
Q 040099 1034 LTIPPGKTIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1034 ~~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
-.+++|..+.|.||.|+|||||+..+..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3688999999999999999999988864
No 499
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.40 E-value=0.075 Score=59.50 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhccc
Q 040099 1038 PGKTIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1038 ~Ge~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
++..+-|+||+|+||||+++.+.+.+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999888765
No 500
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.36 E-value=0.0069 Score=62.53 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=23.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 411 PNGTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 411 ~~g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
.+|.+++|+|++||||||+.+.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998644
Done!