BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040100
(177 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FNP1|PEX1_ARATH Peroxisome biogenesis protein 1 OS=Arabidopsis thaliana GN=PEX1
PE=2 SV=2
Length = 1130
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 70 IPLKQKIGKSKVLVKSFSPAKDINISGQTAHPSEESELQAVAEFLESDIAAPGFQEYEMS 129
IPLK K + L S A + +G ++ E QA+ + SD+AA G S
Sbjct: 258 IPLKGSAKKDEALNMKNSEASKVAENGTSSAKKEPR--QAILRLVFSDLAAKGHLMMVES 315
Query: 130 LRLMQMGAAVRNSSSYLR-MKLNPDKMLPS 158
LRL +GA + +S YLR +N DK +P+
Sbjct: 316 LRLY-LGAGL-HSWVYLRGCNVNEDKEIPA 343
>sp|O24133|CHLD_TOBAC Magnesium-chelatase subunit ChlD, chloroplastic OS=Nicotiana
tabacum GN=CHLD PE=2 SV=1
Length = 758
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 35 RMRLSSSEEFDYPGCPIAVIAYQKRMNRASYVPNFIPLKQKIGKSKVLVKSFSPAKDINI 94
R+R+S++ D P +AV+ +K+ + S+ + PL IG+ + A D I
Sbjct: 45 RLRISATATIDSPNGAVAVVEPEKQPEKISFGRQYFPLAAVIGQDAIKTALLLGAIDREI 104
Query: 95 SG 96
G
Sbjct: 105 GG 106
>sp|A5I9P3|UVRB_LEGPC UvrABC system protein B OS=Legionella pneumophila (strain Corby)
GN=uvrB PE=3 SV=1
Length = 663
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 9/50 (18%)
Query: 2 AFAPDGLIEGF------YDPEAYNPREGKFL---VGLQFHSERMRLSSSE 42
AF PD +E F Y PEAY P F+ + H E+MRLS+++
Sbjct: 79 AFFPDNAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEHIEQMRLSATK 128
>sp|Q5X0E6|UVRB_LEGPL UvrABC system protein B OS=Legionella pneumophila (strain Lens)
GN=uvrB PE=3 SV=1
Length = 663
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 9/50 (18%)
Query: 2 AFAPDGLIEGF------YDPEAYNPREGKFL---VGLQFHSERMRLSSSE 42
AF PD +E F Y PEAY P F+ + H E+MRLS+++
Sbjct: 79 AFFPDNAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEHIEQMRLSATK 128
>sp|Q5X906|UVRB_LEGPA UvrABC system protein B OS=Legionella pneumophila (strain Paris)
GN=uvrB PE=3 SV=1
Length = 663
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 9/50 (18%)
Query: 2 AFAPDGLIEGF------YDPEAYNPREGKFL---VGLQFHSERMRLSSSE 42
AF PD +E F Y PEAY P F+ + H E+MRLS+++
Sbjct: 79 AFFPDNAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEHIEQMRLSATK 128
>sp|Q5ZZD9|UVRB_LEGPH UvrABC system protein B OS=Legionella pneumophila subsp.
pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM
7513) GN=uvrB PE=3 SV=1
Length = 663
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 9/50 (18%)
Query: 2 AFAPDGLIEGF------YDPEAYNPREGKFL---VGLQFHSERMRLSSSE 42
AF PD +E F Y PEAY P F+ + H E+MRLS+++
Sbjct: 79 AFFPDNAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEHIEQMRLSATK 128
>sp|Q0AHG4|PROB_NITEC Glutamate 5-kinase OS=Nitrosomonas eutropha (strain C91) GN=proB
PE=3 SV=1
Length = 373
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 74 QKIGKSKVLVKSFSPAKDINISGQTAHPSEESELQAVAEFLESDIA---APGFQEYEM 128
+K+GK VLV S + A+ + G P+ ELQA A + D+A A F EY++
Sbjct: 44 KKMGKEVVLVSSGAVAEGMQRLGWKTRPAALYELQAAAAVGQMDLAQAYADCFSEYKL 101
>sp|B1Y279|PROB_LEPCP Glutamate 5-kinase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG
8142 / SP-6) GN=proB PE=3 SV=1
Length = 372
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 77 GKSKVLVKSFSPAKDINISGQTAHPSEESELQAVAEFLESDIAAPGFQEYEMSLRLMQMG 136
G+ V+V S + A+ + G + P E ELQA A + +A Q YE SLR +G
Sbjct: 46 GREVVMVSSGAIAEGMKRLGWSTRPKELHELQAAAAVGQMGLA----QVYETSLREQGLG 101
Query: 137 AA 138
+A
Sbjct: 102 SA 103
>sp|P58572|CPHA_NOSS1 Cyanophycin synthetase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=cphA PE=3 SV=1
Length = 901
Score = 31.2 bits (69), Expect = 3.9, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 3/107 (2%)
Query: 60 MNRASYVPNFIPLKQKIGKSKVLVKSFSPAKDINISGQTAHPSEESELQAVAEFLESDIA 119
+ RA Y N +P K I + + ++ + + HP Q V + + DIA
Sbjct: 368 LERAGYTLNSVPPKGTICYLRATANLSTGGTAVDRTDEI-HPENVWLAQRVVKIIGLDIA 426
Query: 120 APGFQEYEMSLRLMQMGAAVR--NSSSYLRMKLNPDKMLPSNVLGAM 164
++S L ++ + N++ RM + P + +P NV GA+
Sbjct: 427 GLDIVTTDISRPLRELDGVIVEVNAAPGFRMHVAPSQGIPRNVAGAV 473
>sp|Q6B9Z0|IGFL_MOUSE Insulin growth factor-like family member OS=Mus musculus GN=Igfl
PE=1 SV=1
Length = 140
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 15 PEAYNPREGKFLVGLQFHSERMRLSSS 41
PE+Y+P++ KF+V L+ H ER SSS
Sbjct: 83 PESYSPKK-KFIVKLKVHGERSHCSSS 108
>sp|Q9JVK1|TATB_NEIMA Sec-independent protein translocase protein TatB OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=tatB PE=3 SV=1
Length = 228
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 84 KSFSPAKDINISGQT---AHPSEESELQAVAEFLESDIAAPGFQEYEMS 129
+S++ A+ + SGQT A P+E + +A E+L + AAP Q E+S
Sbjct: 138 RSYASAETLGDSGQTGSTAEPAETDQDRAWREYLTASAAAPVVQTVEVS 186
>sp|Q9K0J6|TATB_NEIMB Sec-independent protein translocase protein TatB OS=Neisseria
meningitidis serogroup B (strain MC58) GN=tatB PE=3 SV=1
Length = 228
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 84 KSFSPAKDINISGQT---AHPSEESELQAVAEFLESDIAAPGFQEYEMS 129
+S++ A+ + SGQT A P+E + +A E+L + AAP Q E+S
Sbjct: 138 RSYASAETLGDSGQTGSTAEPAETDQDRAWREYLTASAAAPVVQTVEVS 186
>sp|O86109|CPHA_ANAVT Cyanophycin synthetase OS=Anabaena variabilis (strain ATCC 29413 /
PCC 7937) GN=cphA PE=1 SV=1
Length = 901
Score = 30.8 bits (68), Expect = 4.9, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 3/107 (2%)
Query: 60 MNRASYVPNFIPLKQKIGKSKVLVKSFSPAKDINISGQTAHPSEESELQAVAEFLESDIA 119
+ RA Y N +P K I + + ++ + + HP Q V + + DIA
Sbjct: 368 LERAGYTLNSVPPKGTICYLRATANLSTGGTAVDRTDEI-HPENIWLAQRVVKIIGLDIA 426
Query: 120 APGFQEYEMSLRLMQMGAAVR--NSSSYLRMKLNPDKMLPSNVLGAM 164
++S L ++ + N++ RM + P + +P NV GA+
Sbjct: 427 GLDIVTTDISRPLRELDGVIVEVNAAPGFRMHVAPSQGIPRNVAGAV 473
>sp|Q4KF19|UVRB_PSEF5 UvrABC system protein B OS=Pseudomonas fluorescens (strain Pf-5 /
ATCC BAA-477) GN=uvrB PE=3 SV=1
Length = 671
Score = 30.4 bits (67), Expect = 5.8, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 9/50 (18%)
Query: 2 AFAPDGLIEGF------YDPEAYNPREGKFL---VGLQFHSERMRLSSSE 42
AF P+ +E F Y PEAY P F+ + H E+MRLS+++
Sbjct: 78 AFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRLSATK 127
>sp|Q9SJ66|SPP2_ARATH Probable sucrose-phosphatase 2 OS=Arabidopsis thaliana GN=SPP2 PE=1
SV=2
Length = 422
Score = 30.4 bits (67), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 128 MSLRLMQMGAAVRNSSSYLRMKLNPDKMLPSNVLGAMSTGQLSNLMCAPD 177
M L ++ GA + +YL KL + LP N L +G + L PD
Sbjct: 165 MDLDILPQGAGKGQALAYLLKKLKTEGKLPVNTLACGDSGNDAELFSIPD 214
>sp|Q6LT47|UVRB_PHOPR UvrABC system protein B OS=Photobacterium profundum GN=uvrB PE=3
SV=1
Length = 674
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
Query: 3 FAPDGLIEGF------YDPEAYNPREGKFL---VGLQFHSERMRLSSSE 42
F PD +E F Y PEAY P F+ + H E+MRLS+++
Sbjct: 80 FFPDNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATK 128
>sp|A1TTD2|PROB_ACIAC Glutamate 5-kinase OS=Acidovorax citrulli (strain AAC00-1) GN=proB
PE=3 SV=1
Length = 379
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 81 VLVKSFSPAKDINISGQTAHPSEESELQAVAEFLESDIAAPGFQEYEMSLRLMQMGAA 138
++V S + A+ + G +A PSE ELQA A + +A Q YE LR +G+A
Sbjct: 55 IMVSSGAIAEGMKRLGWSARPSEIHELQAAAAVGQMGLA----QMYETKLREQGLGSA 108
>sp|Q5IH13|SPP2_TOBAC Sucrose-phosphatase 2 OS=Nicotiana tabacum GN=SPP2 PE=2 SV=1
Length = 425
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 128 MSLRLMQMGAAVRNSSSYLRMKLNPDKMLPSNVLGAMSTGQLSNLMCAPD 177
M L ++ GA + +YL KL + LP+N L +G + L PD
Sbjct: 165 MDLDILPQGAGKGQALAYLLKKLKSEGKLPNNTLACGDSGNDAELFSIPD 214
>sp|Q5IH14|SPP1_TOBAC Sucrose-phosphatase 1 OS=Nicotiana tabacum GN=SPP1 PE=2 SV=1
Length = 425
Score = 30.0 bits (66), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 128 MSLRLMQMGAAVRNSSSYLRMKLNPDKMLPSNVLGAMSTGQLSNLMCAPD 177
M L ++ GA + +YL KL + LP+N L +G + L PD
Sbjct: 165 MDLDILPQGAGKGRALAYLLKKLKSEGKLPNNTLACGDSGNDAELFSIPD 214
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,380,507
Number of Sequences: 539616
Number of extensions: 2503939
Number of successful extensions: 5313
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 5309
Number of HSP's gapped (non-prelim): 40
length of query: 177
length of database: 191,569,459
effective HSP length: 110
effective length of query: 67
effective length of database: 132,211,699
effective search space: 8858183833
effective search space used: 8858183833
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)