Query 040100
Match_columns 177
No_of_seqs 190 out of 826
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 05:08:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040100.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040100hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02327 CTP synthase 98.1 1.3E-06 2.8E-11 82.8 2.5 37 23-59 516-552 (557)
2 PRK05380 pyrG CTP synthetase; 98.0 1.5E-06 3.3E-11 81.9 1.2 37 23-59 496-532 (533)
3 PRK07765 para-aminobenzoate sy 98.0 5.4E-06 1.2E-10 68.0 2.9 30 1-37 148-177 (214)
4 PRK11366 puuD gamma-glutamyl-g 97.9 3.1E-06 6.7E-11 71.2 1.4 38 23-60 213-251 (254)
5 COG2071 Predicted glutamine am 97.6 2.6E-05 5.6E-10 67.9 1.2 35 4-38 185-222 (243)
6 PRK14607 bifunctional glutamin 97.5 7.5E-05 1.6E-09 69.1 3.0 29 1-36 145-173 (534)
7 TIGR01823 PabB-fungal aminodeo 97.4 7.1E-05 1.5E-09 72.3 2.0 48 6-60 164-211 (742)
8 PRK09065 glutamine amidotransf 97.3 0.00016 3.4E-09 60.2 2.7 27 2-36 163-189 (237)
9 COG0504 PyrG CTP synthase (UTP 97.1 0.00032 6.9E-09 66.7 2.5 37 23-59 496-532 (533)
10 PRK09522 bifunctional glutamin 97.0 0.00043 9.2E-09 64.7 3.0 27 5-38 150-176 (531)
11 PRK07567 glutamine amidotransf 97.0 0.00047 1E-08 57.8 2.7 28 2-37 167-194 (242)
12 PLN02347 GMP synthetase 97.0 0.00049 1.1E-08 64.5 2.7 30 1-37 158-187 (536)
13 PRK00074 guaA GMP synthase; Re 96.9 0.00055 1.2E-08 63.2 2.9 30 1-37 145-174 (511)
14 PLN02889 oxo-acid-lyase/anthra 96.5 0.0011 2.3E-08 66.4 1.7 47 7-61 297-343 (918)
15 PRK06490 glutamine amidotransf 96.5 0.0017 3.8E-08 54.4 2.7 27 2-36 156-182 (239)
16 KOG2387 CTP synthase (UTP-ammo 96.4 0.0022 4.8E-08 61.2 3.0 48 2-55 501-549 (585)
17 PLN02335 anthranilate synthase 96.3 0.00092 2E-08 55.4 -0.1 36 24-60 185-220 (222)
18 PRK05665 amidotransferase; Pro 95.8 0.0068 1.5E-07 51.1 2.8 29 2-38 163-191 (240)
19 cd01747 GATase1_Glutamyl_Hydro 95.8 0.014 3.1E-07 50.0 4.8 24 7-37 191-216 (273)
20 PLN02617 imidazole glycerol ph 95.5 0.01 2.2E-07 56.0 2.9 23 6-37 174-196 (538)
21 PRK08250 glutamine amidotransf 95.4 0.012 2.7E-07 49.0 2.7 28 2-37 157-184 (235)
22 CHL00197 carA carbamoyl-phosph 94.8 0.0078 1.7E-07 54.8 0.0 30 25-54 346-375 (382)
23 PRK07053 glutamine amidotransf 93.0 0.076 1.6E-06 44.5 2.6 28 2-37 155-182 (234)
24 PRK07649 para-aminobenzoate/an 91.7 0.08 1.7E-06 43.0 1.2 12 26-37 162-173 (195)
25 KOG0370 Multifunctional pyrimi 86.1 0.46 9.9E-06 49.6 2.1 75 4-85 310-385 (1435)
26 PLN02832 glutamine amidotransf 85.0 0.86 1.9E-05 39.6 3.0 22 7-37 181-202 (248)
27 KOG1559 Gamma-glutamyl hydrola 81.6 0.79 1.7E-05 41.8 1.5 30 25-55 260-289 (340)
28 TIGR01815 TrpE-clade3 anthrani 81.5 0.66 1.4E-05 45.5 1.1 13 25-37 678-690 (717)
29 PRK05368 homoserine O-succinyl 67.6 5.2 0.00011 35.7 3.0 43 2-63 212-254 (302)
30 KOG1622 GMP synthase [Nucleoti 64.2 2.8 6E-05 40.7 0.6 30 2-38 161-190 (552)
31 COG0505 CarA Carbamoylphosphat 60.8 3.8 8.3E-05 38.2 0.9 33 25-57 334-366 (368)
32 KOG0026 Anthranilate synthase, 53.5 4.7 0.0001 35.1 0.2 13 26-38 188-200 (223)
33 PRK12721 secretion system appa 49.0 24 0.00053 32.0 4.0 74 19-115 262-338 (349)
34 PRK08156 type III secretion sy 46.8 30 0.00066 31.7 4.3 76 19-114 257-332 (361)
35 PRK13109 flhB flagellar biosyn 45.7 33 0.00072 31.3 4.3 76 19-114 271-346 (358)
36 PF11963 DUF3477: Protein of u 45.7 8.9 0.00019 35.6 0.7 26 22-47 4-31 (355)
37 COG1377 FlhB Flagellar biosynt 43.4 32 0.0007 32.0 3.9 74 19-115 269-345 (363)
38 PRK06298 type III secretion sy 42.9 36 0.00079 31.0 4.1 74 19-115 263-339 (356)
39 TIGR01404 FlhB_rel_III type II 42.6 36 0.00079 30.7 4.1 76 19-114 261-336 (342)
40 PRK12772 bifunctional flagella 40.0 41 0.00088 32.6 4.2 77 19-115 525-601 (609)
41 PRK05702 flhB flagellar biosyn 39.9 48 0.001 30.2 4.4 73 19-114 269-344 (359)
42 PRK12468 flhB flagellar biosyn 39.7 47 0.001 30.7 4.4 77 19-115 269-345 (386)
43 PRK09108 type III secretion sy 37.3 53 0.0012 29.9 4.3 76 19-115 264-339 (353)
44 PF01312 Bac_export_2: FlhB Hr 35.2 21 0.00045 32.1 1.4 73 19-114 264-339 (343)
45 TIGR00328 flhB flagellar biosy 33.6 70 0.0015 29.1 4.4 74 19-115 262-338 (347)
46 PF00533 BRCT: BRCA1 C Terminu 31.6 36 0.00079 21.9 1.8 26 118-143 14-39 (78)
47 PF14124 DUF4291: Domain of un 30.5 25 0.00055 30.0 1.0 34 26-61 108-146 (181)
48 PRK12773 flhB flagellar biosyn 29.1 76 0.0017 31.9 4.2 77 19-115 561-637 (646)
49 PF02575 YbaB_DNA_bd: YbaB/Ebf 29.1 58 0.0013 23.1 2.6 29 2-37 25-53 (93)
50 KOG3179 Predicted glutamine sy 28.5 47 0.001 29.7 2.4 27 2-36 169-195 (245)
51 PF00767 Poty_coat: Potyvirus 27.8 54 0.0012 28.7 2.6 68 51-148 136-206 (237)
52 KOG1234 ABC (ATP binding casse 22.6 32 0.00069 32.2 0.3 45 120-164 2-49 (363)
53 PRK00153 hypothetical protein; 22.1 81 0.0018 23.5 2.3 48 127-174 21-73 (104)
No 1
>PLN02327 CTP synthase
Probab=98.11 E-value=1.3e-06 Score=82.76 Aligned_cols=37 Identities=24% Similarity=0.241 Sum_probs=30.1
Q ss_pred CCcEEEeccCCcccccCCCCCCCCCChHHHHHHHHHH
Q 040100 23 GKFLVGLQFHSERMRLSSSEEFDYPGCPIAVIAYQKR 59 (177)
Q Consensus 23 ~~FilGVQWHPE~M~~~~~~~fDy~g~~~Av~ayqkk 59 (177)
++|++|||||||++........-|.+|.+||..+.+.
T Consensus 516 ~pffvGVQfHPE~~s~p~~~~pLF~~Fv~Aa~~~~~~ 552 (557)
T PLN02327 516 HPFFVGVQFHPEFKSRPGKPSPLFLGLIAAASGQLDA 552 (557)
T ss_pred CCEEEEEEcCCCCCCCCCCchHHHHHHHHHHHHhHHh
Confidence 7899999999999987655555699999999875554
No 2
>PRK05380 pyrG CTP synthetase; Validated
Probab=98.03 E-value=1.5e-06 Score=81.91 Aligned_cols=37 Identities=27% Similarity=0.369 Sum_probs=29.7
Q ss_pred CCcEEEeccCCcccccCCCCCCCCCChHHHHHHHHHH
Q 040100 23 GKFLVGLQFHSERMRLSSSEEFDYPGCPIAVIAYQKR 59 (177)
Q Consensus 23 ~~FilGVQWHPE~M~~~~~~~fDy~g~~~Av~ayqkk 59 (177)
++|++|||||||++........-|.+|..||..++++
T Consensus 496 hpfflGVQwHPE~~s~p~~~~pLF~~FV~Aa~~~~~~ 532 (533)
T PRK05380 496 HPWFVGVQFHPEFKSRPRRPHPLFAGFVKAALENKKR 532 (533)
T ss_pred CCEEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHhhc
Confidence 6799999999999876554445689999999887654
No 3
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=97.95 E-value=5.4e-06 Score=68.02 Aligned_cols=30 Identities=30% Similarity=0.383 Sum_probs=25.0
Q ss_pred CcccCCCceeEEEcCCCCCCCCCCcEEEeccCCcccc
Q 040100 1 MAFAPDGLIEGFYDPEAYNPREGKFLVGLQFHSERMR 37 (177)
Q Consensus 1 ~A~A~DGvIEAIE~~d~ynP~e~~FilGVQWHPE~M~ 37 (177)
+|+++||.||||+.++ .+ ++|||||||.+.
T Consensus 148 la~s~~~~vqa~~~~~------~~-i~gvQfHPE~~~ 177 (214)
T PRK07765 148 TARTDSGVIMAVRHRE------LP-IHGVQFHPESVL 177 (214)
T ss_pred EEEcCCCcEEEEEeCC------CC-EEEEeeCCCccc
Confidence 3678999999999876 44 899999999753
No 4
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=97.94 E-value=3.1e-06 Score=71.17 Aligned_cols=38 Identities=18% Similarity=0.174 Sum_probs=28.4
Q ss_pred CCcEEEeccCCcccccCCCC-CCCCCChHHHHHHHHHHh
Q 040100 23 GKFLVGLQFHSERMRLSSSE-EFDYPGCPIAVIAYQKRM 60 (177)
Q Consensus 23 ~~FilGVQWHPE~M~~~~~~-~fDy~g~~~Av~ayqkk~ 60 (177)
.+|++|||||||++...+.. ..-|..|.+||+.+.+.+
T Consensus 213 ~~~~~GVQwHPE~~~~~~~~~~~lf~~fv~~~~~~~~~~ 251 (254)
T PRK11366 213 HPFALGVQWHPEWNSSEYALSRILFEGFITACQHHIAEK 251 (254)
T ss_pred CCCEEEEEeCCCcCCCCCchHHHHHHHHHHHHHHHHHhc
Confidence 56899999999988753322 345888999998877543
No 5
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=97.56 E-value=2.6e-05 Score=67.87 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=22.0
Q ss_pred cCCCceeEEEcCC---CCCCCCCCcEEEeccCCccccc
Q 040100 4 APDGLIEGFYDPE---AYNPREGKFLVGLQFHSERMRL 38 (177)
Q Consensus 4 A~DGvIEAIE~~d---~ynP~e~~FilGVQWHPE~M~~ 38 (177)
++|=+|+|.-.++ +..-..+.|++|||||||++..
T Consensus 185 a~~L~V~A~a~DG~VEAie~~~~~fvlGVQWHPE~~~~ 222 (243)
T COG2071 185 APGLVVEARAPDGTVEAVEVKNDAFVLGVQWHPEYLVD 222 (243)
T ss_pred CCCcEEEEECCCCcEEEEEecCCceEEEEecChhhhcc
Confidence 3455666764322 1111224799999999998876
No 6
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=97.47 E-value=7.5e-05 Score=69.08 Aligned_cols=29 Identities=38% Similarity=0.574 Sum_probs=24.4
Q ss_pred CcccCCCceeEEEcCCCCCCCCCCcEEEeccCCccc
Q 040100 1 MAFAPDGLIEGFYDPEAYNPREGKFLVGLQFHSERM 36 (177)
Q Consensus 1 ~A~A~DGvIEAIE~~d~ynP~e~~FilGVQWHPE~M 36 (177)
+|+++||.|+||+..+ .+ ++|||||||..
T Consensus 145 lA~s~d~~i~a~~~~~------~p-i~GvQFHPE~~ 173 (534)
T PRK14607 145 TAKSDDGEIMGIRHKE------HP-IFGVQFHPESI 173 (534)
T ss_pred EEEcCCCCEEEEEECC------CC-EEEEEeCCCCC
Confidence 3678999999999886 44 78999999964
No 7
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=97.40 E-value=7.1e-05 Score=72.30 Aligned_cols=48 Identities=8% Similarity=-0.007 Sum_probs=34.9
Q ss_pred CCceeEEEcCCCCCCCCCCcEEEeccCCcccccCCCCCCCCCChHHHHHHHHHHh
Q 040100 6 DGLIEGFYDPEAYNPREGKFLVGLQFHSERMRLSSSEEFDYPGCPIAVIAYQKRM 60 (177)
Q Consensus 6 DGvIEAIE~~d~ynP~e~~FilGVQWHPE~M~~~~~~~fDy~g~~~Av~ayqkk~ 60 (177)
+|+||||++.+ .+ ++|||||||.........--|.-|.++|..|+++.
T Consensus 164 ~~~i~ai~h~~------~p-i~GVQFHPE~~~s~~g~~~Lf~nFl~~~~~~~~~~ 211 (742)
T TIGR01823 164 GIILMSAQTKK------KP-WFGVQYHPESCCSELGSGKLVSNFLKLAFINNVKT 211 (742)
T ss_pred CCeEEEEEEcC------Cc-eEEEEeCcccCCCCccHHHHHHHHHHHHHHhhhhc
Confidence 46999999987 44 56999999975543211233778888999988644
No 8
>PRK09065 glutamine amidotransferase; Provisional
Probab=97.30 E-value=0.00016 Score=60.16 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=22.4
Q ss_pred cccCCCceeEEEcCCCCCCCCCCcEEEeccCCccc
Q 040100 2 AFAPDGLIEGFYDPEAYNPREGKFLVGLQFHSERM 36 (177)
Q Consensus 2 A~A~DGvIEAIE~~d~ynP~e~~FilGVQWHPE~M 36 (177)
|.++++.|+||+..+ +++|||||||+.
T Consensus 163 a~s~~~~iqa~~~~~--------~i~gvQfHPE~~ 189 (237)
T PRK09065 163 ARSAQDPHQAFRYGP--------HAWGVQFHPEFT 189 (237)
T ss_pred EcCCCCCeeEEEeCC--------CEEEEEeCCcCC
Confidence 667889999998754 589999999953
No 9
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=97.07 E-value=0.00032 Score=66.74 Aligned_cols=37 Identities=27% Similarity=0.318 Sum_probs=33.0
Q ss_pred CCcEEEeccCCcccccCCCCCCCCCChHHHHHHHHHH
Q 040100 23 GKFLVGLQFHSERMRLSSSEEFDYPGCPIAVIAYQKR 59 (177)
Q Consensus 23 ~~FilGVQWHPE~M~~~~~~~fDy~g~~~Av~ayqkk 59 (177)
++|++|+|||||+........--|-||.+|+..|++.
T Consensus 496 hpfFv~~QfHPEf~SrP~~phPlf~~fv~Aa~~~~~~ 532 (533)
T COG0504 496 HPFFVATQFHPEFKSRPLRPHPLFVGFVKAALEYKKD 532 (533)
T ss_pred CceEEEEcccccccCCCCCCCccHHHHHHHHHHhhcc
Confidence 7899999999999887777778899999999999864
No 10
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=97.03 E-value=0.00043 Score=64.70 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=22.7
Q ss_pred CCCceeEEEcCCCCCCCCCCcEEEeccCCccccc
Q 040100 5 PDGLIEGFYDPEAYNPREGKFLVGLQFHSERMRL 38 (177)
Q Consensus 5 ~DGvIEAIE~~d~ynP~e~~FilGVQWHPE~M~~ 38 (177)
.||.|+||++.+ ..++|||||||.+..
T Consensus 150 sd~~v~ai~~~~-------~~i~GVQFHPEs~~T 176 (531)
T PRK09522 150 FNGMVMAVRHDA-------DRVCGFQFHPESILT 176 (531)
T ss_pred cCCCEEEEEECC-------CCEEEEEecCccccC
Confidence 699999999875 458899999997654
No 11
>PRK07567 glutamine amidotransferase; Provisional
Probab=97.00 E-value=0.00047 Score=57.76 Aligned_cols=28 Identities=29% Similarity=0.250 Sum_probs=22.8
Q ss_pred cccCCCceeEEEcCCCCCCCCCCcEEEeccCCcccc
Q 040100 2 AFAPDGLIEGFYDPEAYNPREGKFLVGLQFHSERMR 37 (177)
Q Consensus 2 A~A~DGvIEAIE~~d~ynP~e~~FilGVQWHPE~M~ 37 (177)
|.++++.|+||+..+ .++|||||||+..
T Consensus 167 A~s~~~~vqa~~~~~--------~~~gvQfHPE~~~ 194 (242)
T PRK07567 167 ATSPTCPVQMFRVGE--------NVYATQFHPELDA 194 (242)
T ss_pred EeCCCCCEEEEEeCC--------CEEEEEeCCcCCH
Confidence 667889999999654 4899999999643
No 12
>PLN02347 GMP synthetase
Probab=96.96 E-value=0.00049 Score=64.53 Aligned_cols=30 Identities=27% Similarity=0.432 Sum_probs=24.7
Q ss_pred CcccCCCceeEEEcCCCCCCCCCCcEEEeccCCcccc
Q 040100 1 MAFAPDGLIEGFYDPEAYNPREGKFLVGLQFHSERMR 37 (177)
Q Consensus 1 ~A~A~DGvIEAIE~~d~ynP~e~~FilGVQWHPE~M~ 37 (177)
+|+++||.|+||+..+ ..++|||||||...
T Consensus 158 lA~s~~~~iaai~~~~-------~~i~GvQFHPE~~~ 187 (536)
T PLN02347 158 VAKSVQGAVVAIENRE-------RRIYGLQYHPEVTH 187 (536)
T ss_pred EEEeCCCcEEEEEECC-------CCEEEEEccCCCCc
Confidence 3678899999999876 34799999999754
No 13
>PRK00074 guaA GMP synthase; Reviewed
Probab=96.95 E-value=0.00055 Score=63.24 Aligned_cols=30 Identities=27% Similarity=0.350 Sum_probs=24.7
Q ss_pred CcccCCCceeEEEcCCCCCCCCCCcEEEeccCCcccc
Q 040100 1 MAFAPDGLIEGFYDPEAYNPREGKFLVGLQFHSERMR 37 (177)
Q Consensus 1 ~A~A~DGvIEAIE~~d~ynP~e~~FilGVQWHPE~M~ 37 (177)
+|.++|+.|+||+..+ + -++|||||||...
T Consensus 145 lA~s~~~~v~ai~~~~------~-~i~GvQFHPE~~~ 174 (511)
T PRK00074 145 IASTENCPIAAIANEE------R-KFYGVQFHPEVTH 174 (511)
T ss_pred EEEeCCCCEEEEEeCC------C-CEEEEeCCCCcCC
Confidence 3678899999999765 3 4899999999764
No 14
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=96.54 E-value=0.0011 Score=66.40 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=35.9
Q ss_pred CceeEEEcCCCCCCCCCCcEEEeccCCcccccCCCCCCCCCChHHHHHHHHHHhh
Q 040100 7 GLIEGFYDPEAYNPREGKFLVGLQFHSERMRLSSSEEFDYPGCPIAVIAYQKRMN 61 (177)
Q Consensus 7 GvIEAIE~~d~ynP~e~~FilGVQWHPE~M~~~~~~~fDy~g~~~Av~ayqkk~~ 61 (177)
|+|=||.+.. ..++|||||||-+... ...--+..|..+|..|.++..
T Consensus 297 ~viMairH~~-------~P~~GVQfHPESi~t~-~G~~l~~nF~~~~~~~~~~~~ 343 (918)
T PLN02889 297 KILMGIMHST-------RPHYGLQFHPESIATC-YGRQIFKNFREITQDYWLRLR 343 (918)
T ss_pred CeeEEEEECC-------CceEEEEeCCccccCc-hhHHHHHHHHHHHHHHhhccC
Confidence 7999999987 3578999999987652 233447788889999976543
No 15
>PRK06490 glutamine amidotransferase; Provisional
Probab=96.53 E-value=0.0017 Score=54.37 Aligned_cols=27 Identities=33% Similarity=0.260 Sum_probs=22.6
Q ss_pred cccCCCceeEEEcCCCCCCCCCCcEEEeccCCccc
Q 040100 2 AFAPDGLIEGFYDPEAYNPREGKFLVGLQFHSERM 36 (177)
Q Consensus 2 A~A~DGvIEAIE~~d~ynP~e~~FilGVQWHPE~M 36 (177)
|.++++.|+||...+ .++|+|||||+.
T Consensus 156 A~s~~~~~qa~~~~~--------~v~g~QfHPE~~ 182 (239)
T PRK06490 156 ATGDDFPNQAFRYGD--------NAWGLQFHPEVT 182 (239)
T ss_pred EeCCCCCeEEEEeCC--------CEEEEeeCccCC
Confidence 667899999998754 389999999975
No 16
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=96.43 E-value=0.0022 Score=61.24 Aligned_cols=48 Identities=23% Similarity=0.180 Sum_probs=38.4
Q ss_pred cccCCC-ceeEEEcCCCCCCCCCCcEEEeccCCcccccCCCCCCCCCChHHHHHH
Q 040100 2 AFAPDG-LIEGFYDPEAYNPREGKFLVGLQFHSERMRLSSSEEFDYPGCPIAVIA 55 (177)
Q Consensus 2 A~A~DG-vIEAIE~~d~ynP~e~~FilGVQWHPE~M~~~~~~~fDy~g~~~Av~a 55 (177)
+.+.|| -+|-||-++ +||.+|+|||||++.........|-|+..|...
T Consensus 501 Gkd~~g~rmeI~El~~------HP~fVg~QfHPE~~srp~kpsp~flGlv~as~~ 549 (585)
T KOG2387|consen 501 GKDVTGKRMEIIELES------HPFFVGVQFHPEFKSRPDKPSPLFLGLVAASCG 549 (585)
T ss_pred eecCCCcEEEEEEcCC------CCceeeeccCHHHhcCCCCCCcchhHhHHHHHh
Confidence 344454 478899888 899999999999998888888889888775443
No 17
>PLN02335 anthranilate synthase
Probab=96.34 E-value=0.00092 Score=55.35 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=23.3
Q ss_pred CcEEEeccCCcccccCCCCCCCCCChHHHHHHHHHHh
Q 040100 24 KFLVGLQFHSERMRLSSSEEFDYPGCPIAVIAYQKRM 60 (177)
Q Consensus 24 ~FilGVQWHPE~M~~~~~~~fDy~g~~~Av~ayqkk~ 60 (177)
++++|||||||.... ....--|.-|...|.++..|+
T Consensus 185 ~~i~GvQfHPE~~~~-~~g~~i~~nF~~~~~~~~~~~ 220 (222)
T PLN02335 185 KHIQGVQFHPESIIT-TEGKTIVRNFIKIIEKKESEK 220 (222)
T ss_pred CCEEEEEeCCCCCCC-hhHHHHHHHHHHHHHhhcccc
Confidence 479999999997643 222233666666776665554
No 18
>PRK05665 amidotransferase; Provisional
Probab=95.83 E-value=0.0068 Score=51.08 Aligned_cols=29 Identities=14% Similarity=-0.039 Sum_probs=22.5
Q ss_pred cccCCCceeEEEcCCCCCCCCCCcEEEeccCCccccc
Q 040100 2 AFAPDGLIEGFYDPEAYNPREGKFLVGLQFHSERMRL 38 (177)
Q Consensus 2 A~A~DGvIEAIE~~d~ynP~e~~FilGVQWHPE~M~~ 38 (177)
|.+++.-++|++..+ .++|+|||||+...
T Consensus 163 a~s~~~~~q~~~~~~--------~~~g~QfHPE~~~~ 191 (240)
T PRK05665 163 ASSDFCPFAAYHIGD--------QVLCFQGHPEFVHD 191 (240)
T ss_pred EeCCCCcEEEEEeCC--------CEEEEecCCcCcHH
Confidence 567788889997543 59999999997543
No 19
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=95.83 E-value=0.014 Score=49.99 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=18.2
Q ss_pred Cc--eeEEEcCCCCCCCCCCcEEEeccCCcccc
Q 040100 7 GL--IEGFYDPEAYNPREGKFLVGLQFHSERMR 37 (177)
Q Consensus 7 Gv--IEAIE~~d~ynP~e~~FilGVQWHPE~M~ 37 (177)
|+ |.+|+..+ . .+.|||||||.-.
T Consensus 191 g~~fis~ie~~~------~-pi~gvQFHPEks~ 216 (273)
T cd01747 191 GVEFISTVEAYK------Y-PIYGVQWHPEKNA 216 (273)
T ss_pred CceEEEEEEecC------C-ceEEEecCCCccc
Confidence 64 78888765 2 4899999999543
No 20
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=95.48 E-value=0.01 Score=56.01 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=18.2
Q ss_pred CCceeEEEcCCCCCCCCCCcEEEeccCCcccc
Q 040100 6 DGLIEGFYDPEAYNPREGKFLVGLQFHSERMR 37 (177)
Q Consensus 6 DGvIEAIE~~d~ynP~e~~FilGVQWHPE~M~ 37 (177)
|++|+||+. + .++|||||||...
T Consensus 174 ~~~IaAI~~-g--------nI~GVQFHPE~s~ 196 (538)
T PLN02617 174 GEFIASVRK-G--------NVHAVQFHPEKSG 196 (538)
T ss_pred CCcEEEEEe-C--------CEEEEEcCCccCc
Confidence 578999973 2 5999999999753
No 21
>PRK08250 glutamine amidotransferase; Provisional
Probab=95.35 E-value=0.012 Score=48.98 Aligned_cols=28 Identities=18% Similarity=0.049 Sum_probs=20.7
Q ss_pred cccCCCceeEEEcCCCCCCCCCCcEEEeccCCcccc
Q 040100 2 AFAPDGLIEGFYDPEAYNPREGKFLVGLQFHSERMR 37 (177)
Q Consensus 2 A~A~DGvIEAIE~~d~ynP~e~~FilGVQWHPE~M~ 37 (177)
|.+++.-++|+...+ .++|||||||+..
T Consensus 157 A~s~~~~~qa~~~~~--------~~~g~QfHPE~~~ 184 (235)
T PRK08250 157 ATSEGCPRQIVQYSN--------LVYGFQCHMEFTV 184 (235)
T ss_pred ECCCCCCceEEEeCC--------CEEEEeecCcCCH
Confidence 456667788887543 4999999999644
No 22
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=94.83 E-value=0.0078 Score=54.76 Aligned_cols=30 Identities=10% Similarity=0.093 Sum_probs=18.3
Q ss_pred cEEEeccCCcccccCCCCCCCCCChHHHHH
Q 040100 25 FLVGLQFHSERMRLSSSEEFDYPGCPIAVI 54 (177)
Q Consensus 25 FilGVQWHPE~M~~~~~~~fDy~g~~~Av~ 54 (177)
.++|||||||......+...-|.-|...|+
T Consensus 346 pi~gVQFHPE~~~gp~d~~~lf~~Fv~~~~ 375 (382)
T CHL00197 346 PYFSVQYHPEASPGPHDADYLFEYFIEIIK 375 (382)
T ss_pred CcEEEeeCCCCCCCCCCHHHHHHHHHHHHH
Confidence 589999999986543322223444555554
No 23
>PRK07053 glutamine amidotransferase; Provisional
Probab=93.02 E-value=0.076 Score=44.50 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=19.6
Q ss_pred cccCCCceeEEEcCCCCCCCCCCcEEEeccCCcccc
Q 040100 2 AFAPDGLIEGFYDPEAYNPREGKFLVGLQFHSERMR 37 (177)
Q Consensus 2 A~A~DGvIEAIE~~d~ynP~e~~FilGVQWHPE~M~ 37 (177)
|.+++.-++||... +-++|+|||||+..
T Consensus 155 a~s~~~~~qaf~~g--------~~~~g~QfHpE~~~ 182 (234)
T PRK07053 155 ASTPACRHQAFAWG--------NHVLALQFHPEARE 182 (234)
T ss_pred EcCCCCCeeEEEeC--------CCEEEEeeCccCCH
Confidence 44556667777643 24899999999654
No 24
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=91.73 E-value=0.08 Score=43.05 Aligned_cols=12 Identities=42% Similarity=0.822 Sum_probs=10.3
Q ss_pred EEEeccCCcccc
Q 040100 26 LVGLQFHSERMR 37 (177)
Q Consensus 26 ilGVQWHPE~M~ 37 (177)
++|||||||...
T Consensus 162 i~gvQFHPE~~~ 173 (195)
T PRK07649 162 IEGVQFHPESIM 173 (195)
T ss_pred EEEEEECCCCCC
Confidence 899999999654
No 25
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=86.07 E-value=0.46 Score=49.58 Aligned_cols=75 Identities=19% Similarity=0.230 Sum_probs=52.1
Q ss_pred cCCCceeEEEcCCCCCCCCCCcEEEeccCCcccccCCCCCCCCCChHHHHHHHHHHhhhcCCCCCCCcchhhhh-hccee
Q 040100 4 APDGLIEGFYDPEAYNPREGKFLVGLQFHSERMRLSSSEEFDYPGCPIAVIAYQKRMNRASYVPNFIPLKQKIG-KSKVL 82 (177)
Q Consensus 4 A~DGvIEAIE~~d~ynP~e~~FilGVQWHPE~M~~~~~~~fDy~g~~~Av~ayqkk~~~~~~~~~~~~l~~~me-krk~i 82 (177)
..||-=|+|.+.. ..++.||||||--.-..+.++-|.=|...++-++.....+..+..+.++..-.+ +++.+
T Consensus 310 ~NDgSNEGI~Hss-------~P~fSvQFHPEat~GP~DTeyLFDiFi~lvkk~kst~tAs~~~t~~~~~~~~~~~~kVlv 382 (1435)
T KOG0370|consen 310 ANDGSNEGIMHSS-------KPFFSVQFHPEATPGPHDTEYLFDVFIELVKKSKSTPTASAFITEPAKAAPRVEVKKVLV 382 (1435)
T ss_pred cccCCCceEecCC-------CCceeeecCCcCCCCCcchHHHHHHHHHHHHHHhcCCcccccccccccccccccccEEEE
Confidence 4688999999876 346799999996555555566687777777777766665566655566666666 55555
Q ss_pred eec
Q 040100 83 VKS 85 (177)
Q Consensus 83 vrs 85 (177)
+.|
T Consensus 383 lGS 385 (1435)
T KOG0370|consen 383 LGS 385 (1435)
T ss_pred Ecc
Confidence 555
No 26
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=84.98 E-value=0.86 Score=39.56 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=16.0
Q ss_pred CceeEEEcCCCCCCCCCCcEEEeccCCcccc
Q 040100 7 GLIEGFYDPEAYNPREGKFLVGLQFHSERMR 37 (177)
Q Consensus 7 GvIEAIE~~d~ynP~e~~FilGVQWHPE~M~ 37 (177)
++|-||... -++|+|||||...
T Consensus 181 ~~~~aV~qg---------nvlatqFHPEls~ 202 (248)
T PLN02832 181 KVIVAVKQG---------NLLATAFHPELTA 202 (248)
T ss_pred ceEEEEEeC---------CEEEEEccCccCC
Confidence 567777633 3899999999643
No 27
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=81.58 E-value=0.79 Score=41.75 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=17.2
Q ss_pred cEEEeccCCcccccCCCCCCCCCChHHHHHH
Q 040100 25 FLVGLQFHSERMRLSSSEEFDYPGCPIAVIA 55 (177)
Q Consensus 25 FilGVQWHPE~M~~~~~~~fDy~g~~~Av~a 55 (177)
.+-|+|||||--.-. -..-|-|--.+|++-
T Consensus 260 PvtgfQWHPEKnafE-Wgss~IpHsedAiqv 289 (340)
T KOG1559|consen 260 PVTGFQWHPEKNAFE-WGSSDIPHSEDAIQV 289 (340)
T ss_pred cceeeeecCccCccc-cccCCCCCChhHHHH
Confidence 489999999943211 112335555666543
No 28
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=81.52 E-value=0.66 Score=45.54 Aligned_cols=13 Identities=38% Similarity=0.588 Sum_probs=10.6
Q ss_pred cEEEeccCCcccc
Q 040100 25 FLVGLQFHSERMR 37 (177)
Q Consensus 25 FilGVQWHPE~M~ 37 (177)
.++|||||||...
T Consensus 678 ~i~GVQFHPEsi~ 690 (717)
T TIGR01815 678 PLAAVQFHPESIM 690 (717)
T ss_pred CEEEEEeCCeeCC
Confidence 3789999999753
No 29
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=67.65 E-value=5.2 Score=35.70 Aligned_cols=43 Identities=16% Similarity=0.010 Sum_probs=27.1
Q ss_pred cccCCCceeEEEcCCCCCCCCCCcEEEeccCCcccccCCCCCCCCCChHHHHHHHHHHhhhc
Q 040100 2 AFAPDGLIEGFYDPEAYNPREGKFLVGLQFHSERMRLSSSEEFDYPGCPIAVIAYQKRMNRA 63 (177)
Q Consensus 2 A~A~DGvIEAIE~~d~ynP~e~~FilGVQWHPE~M~~~~~~~fDy~g~~~Av~ayqkk~~~~ 63 (177)
|.+++-=|.++...+ .-+++||.|||+-.. .-..+|.+-+...
T Consensus 212 A~S~~~gv~~~~~~~-------~r~~~vQgHPEYd~~------------tL~~EY~RD~~~~ 254 (302)
T PRK05368 212 AESEEAGVYLFASKD-------KREVFVTGHPEYDAD------------TLAQEYFRDLGAG 254 (302)
T ss_pred ecCCCCCeEEEEeCC-------CCEEEEECCCCCCHH------------HHHHHHHHHHhCC
Confidence 344444455666544 248999999997443 3467788776643
No 30
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=64.18 E-value=2.8 Score=40.72 Aligned_cols=30 Identities=33% Similarity=0.480 Sum_probs=20.2
Q ss_pred cccCCCceeEEEcCCCCCCCCCCcEEEeccCCccccc
Q 040100 2 AFAPDGLIEGFYDPEAYNPREGKFLVGLQFHSERMRL 38 (177)
Q Consensus 2 A~A~DGvIEAIE~~d~ynP~e~~FilGVQWHPE~M~~ 38 (177)
|++..+.+-+|.... +-++|+|||||--..
T Consensus 161 a~s~n~~va~i~~e~-------kkiyglqfhpEV~~t 190 (552)
T KOG1622|consen 161 AFSGNKPVAGILNEL-------KKIYGLQFHPEVTLT 190 (552)
T ss_pred EeecCcceeeehhhh-------hhhhcCCCCCccccc
Confidence 455555566666543 569999999996443
No 31
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=60.81 E-value=3.8 Score=38.16 Aligned_cols=33 Identities=12% Similarity=0.071 Sum_probs=21.0
Q ss_pred cEEEeccCCcccccCCCCCCCCCChHHHHHHHH
Q 040100 25 FLVGLQFHSERMRLSSSEEFDYPGCPIAVIAYQ 57 (177)
Q Consensus 25 FilGVQWHPE~M~~~~~~~fDy~g~~~Av~ayq 57 (177)
.++.||||||--.-+.+-..-|.=|..-+.+++
T Consensus 334 P~fSVQ~HPEAsPGPhDt~ylFd~Fi~~~~~~~ 366 (368)
T COG0505 334 PAFSVQYHPEASPGPHDTRYLFDEFIELMEAAK 366 (368)
T ss_pred ceEEEccCCCCCCCCcccHHHHHHHHHHHHHhh
Confidence 589999999954433333344666666665554
No 32
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=53.49 E-value=4.7 Score=35.09 Aligned_cols=13 Identities=38% Similarity=0.718 Sum_probs=10.5
Q ss_pred EEEeccCCccccc
Q 040100 26 LVGLQFHSERMRL 38 (177)
Q Consensus 26 ilGVQWHPE~M~~ 38 (177)
+-|||||||-...
T Consensus 188 ieGVQfHPESIlt 200 (223)
T KOG0026|consen 188 IQGVQFHPESIIT 200 (223)
T ss_pred ccceeecchhhhh
Confidence 6799999996543
No 33
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=49.01 E-value=24 Score=32.00 Aligned_cols=74 Identities=19% Similarity=0.226 Sum_probs=50.2
Q ss_pred CCCCCCcEEEeccCCcccccCCCCCCCCCChHH---HHHHHHHHhhhcCCCCCCCcchhhhhhcceeeecccccchhhcc
Q 040100 19 NPREGKFLVGLQFHSERMRLSSSEEFDYPGCPI---AVIAYQKRMNRASYVPNFIPLKQKIGKSKVLVKSFSPAKDINIS 95 (177)
Q Consensus 19 nP~e~~FilGVQWHPE~M~~~~~~~fDy~g~~~---Av~ayqkk~~~~~~~~~~~~l~~~mekrk~ivrsfslAk~~y~~ 95 (177)
||. +|.++++|+|+.+.. ...--.|-+. .++++.++-+ =-||+.-+|||.||..
T Consensus 262 NPT--H~AVAL~Yd~~~~~a---P~VvAKG~d~~A~~Ir~iA~e~~------------------VPiven~pLARaLY~~ 318 (349)
T PRK12721 262 NPT--HIAVCLYYHPGETPL---PRVLEKGKDAQALHIVKLAERNG------------------IPVVENIPLARALFKE 318 (349)
T ss_pred cCC--ceEEEEEeCCCCCCC---CEEEEEeCcHHHHHHHHHHHHcC------------------CCEEeCHHHHHHHHHh
Confidence 674 699999999996543 2222333333 3333333222 2378888999999987
Q ss_pred CCCCCCCchhhhHhhhhhhh
Q 040100 96 GQTAHPSEESELQAVAEFLE 115 (177)
Q Consensus 96 ~~~~~~~~~~el~~gaefle 115 (177)
-.....-.+.-.++.||.|-
T Consensus 319 ~~vg~~IP~ely~aVA~ILa 338 (349)
T PRK12721 319 VECGDYIPETLFEPVAALLR 338 (349)
T ss_pred CCCCCcCCHHHHHHHHHHHH
Confidence 77777777889999999984
No 34
>PRK08156 type III secretion system protein SpaS; Validated
Probab=46.85 E-value=30 Score=31.72 Aligned_cols=76 Identities=16% Similarity=0.161 Sum_probs=49.7
Q ss_pred CCCCCCcEEEeccCCcccccCCCCCCCCCChHHHHHHHHHHhhhcCCCCCCCcchhhhhhcceeeecccccchhhccCCC
Q 040100 19 NPREGKFLVGLQFHSERMRLSSSEEFDYPGCPIAVIAYQKRMNRASYVPNFIPLKQKIGKSKVLVKSFSPAKDINISGQT 98 (177)
Q Consensus 19 nP~e~~FilGVQWHPE~M~~~~~~~fDy~g~~~Av~ayqkk~~~~~~~~~~~~l~~~mekrk~ivrsfslAk~~y~~~~~ 98 (177)
||. +|.++++|+|+.|..+ ..--.|-.. .|-+-|..+ -|-.=-||..=.|||.||.+...
T Consensus 257 NPT--H~AVALkYd~~~~~AP---~VvAKG~d~--~A~~IreiA-------------~e~~VPiven~pLARaLY~~vev 316 (361)
T PRK08156 257 NPT--HIAIGIYFNPELAPIP---FISVRETNQ--RALAVRAYA-------------EKVGVPVVRDIKLARRLYKTHRR 316 (361)
T ss_pred CCC--eEEEEEEecCCCCCCC---EEEEecCcH--HHHHHHHHH-------------HHCCCCEeeCHHHHHHHHHhCCC
Confidence 674 6999999999976541 112222222 222222221 01222378888999999988888
Q ss_pred CCCCchhhhHhhhhhh
Q 040100 99 AHPSEESELQAVAEFL 114 (177)
Q Consensus 99 ~~~~~~~el~~gaefl 114 (177)
...-.+.-.++.||.|
T Consensus 317 g~~IP~ely~AVA~iL 332 (361)
T PRK08156 317 YSFVSLEDLDEVLRLL 332 (361)
T ss_pred CCcCCHHHHHHHHHHH
Confidence 8778888999999998
No 35
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=45.72 E-value=33 Score=31.30 Aligned_cols=76 Identities=13% Similarity=0.155 Sum_probs=49.5
Q ss_pred CCCCCCcEEEeccCCcccccCCCCCCCCCChHHHHHHHHHHhhhcCCCCCCCcchhhhhhcceeeecccccchhhccCCC
Q 040100 19 NPREGKFLVGLQFHSERMRLSSSEEFDYPGCPIAVIAYQKRMNRASYVPNFIPLKQKIGKSKVLVKSFSPAKDINISGQT 98 (177)
Q Consensus 19 nP~e~~FilGVQWHPE~M~~~~~~~fDy~g~~~Av~ayqkk~~~~~~~~~~~~l~~~mekrk~ivrsfslAk~~y~~~~~ 98 (177)
||. +|.+|+.|+|+.+..+ ..--.|-.. +...-++.....- =-||+.=+|||.||.+...
T Consensus 271 NPT--H~AVAL~Yd~~~~~aP---~VvAKG~d~-~A~~Ir~~A~e~~--------------VPiven~pLARaLy~~~ev 330 (358)
T PRK13109 271 NPT--HFAIALRYERSENPAP---LVVAKGQDL-IALKIREIAEENG--------------IPVIEDKPLARSLYDAVQV 330 (358)
T ss_pred CCC--ceEEEeEeCCCCCCCC---EEEEEeCcH-HHHHHHHHHHHcC--------------CCEEeCHHHHHHHHHhCCC
Confidence 674 6999999999976541 122222221 1112222222122 2378889999999988877
Q ss_pred CCCCchhhhHhhhhhh
Q 040100 99 AHPSEESELQAVAEFL 114 (177)
Q Consensus 99 ~~~~~~~el~~gaefl 114 (177)
...-.++-.++.||.|
T Consensus 331 g~~IP~ely~AVA~IL 346 (358)
T PRK13109 331 DQVIPAEFYRPVAQIL 346 (358)
T ss_pred CCcCCHHHHHHHHHHH
Confidence 7777889999999998
No 36
>PF11963 DUF3477: Protein of unknown function (DUF3477); InterPro: IPR022570 This entry represents the N-terminal region of the coronovirus polyprotein, which contains non-structural protein 1 (Nsp1); the function of Nsp1 is not known.
Probab=45.71 E-value=8.9 Score=35.57 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=18.4
Q ss_pred CCCcEEEeccCCcccc--cCCCCCCCCC
Q 040100 22 EGKFLVGLQFHSERMR--LSSSEEFDYP 47 (177)
Q Consensus 22 e~~FilGVQWHPE~M~--~~~~~~fDy~ 47 (177)
-++|-||+||-||+=| ....+..|+|
T Consensus 4 ~~KYGL~~~WAPEFpWm~~da~EkL~nP 31 (355)
T PF11963_consen 4 INKYGLGLKWAPEFPWMFEDAEEKLDNP 31 (355)
T ss_pred ccccccccccCCCCcccCCChHHhhCCC
Confidence 3679999999999754 3444456665
No 37
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=43.39 E-value=32 Score=31.97 Aligned_cols=74 Identities=20% Similarity=0.278 Sum_probs=50.2
Q ss_pred CCCCCCcEEEeccCCcccccCCCCCCCCCChHH---HHHHHHHHhhhcCCCCCCCcchhhhhhcceeeecccccchhhcc
Q 040100 19 NPREGKFLVGLQFHSERMRLSSSEEFDYPGCPI---AVIAYQKRMNRASYVPNFIPLKQKIGKSKVLVKSFSPAKDINIS 95 (177)
Q Consensus 19 nP~e~~FilGVQWHPE~M~~~~~~~fDy~g~~~---Av~ayqkk~~~~~~~~~~~~l~~~mekrk~ivrsfslAk~~y~~ 95 (177)
||. +|.+|++|.||-|..+ -.--.|-.. +++++.++-+- -|++-=.|||.||..
T Consensus 269 NPT--H~AVAlkY~~~~~~AP---~VvAKG~d~~AlkIreiA~e~~I------------------pi~enppLARaLY~~ 325 (363)
T COG1377 269 NPT--HYAVALKYDPEKMPAP---VVVAKGVDLVALKIREIAKEHGI------------------PIIENPPLARALYRQ 325 (363)
T ss_pred CcC--ceeeeeeeccccCCCC---EEEEeCCcHHHHHHHHHHHHcCC------------------ceecChHHHHHHHHh
Confidence 674 6999999999976542 111112111 34444433322 356666899999999
Q ss_pred CCCCCCCchhhhHhhhhhhh
Q 040100 96 GQTAHPSEESELQAVAEFLE 115 (177)
Q Consensus 96 ~~~~~~~~~~el~~gaefle 115 (177)
......-.+.-.++.||.|-
T Consensus 326 ~~v~~~IP~e~y~aVaevL~ 345 (363)
T COG1377 326 VEVGQQIPEELYKAVAEVLA 345 (363)
T ss_pred cCccccCCHHHHHHHHHHHH
Confidence 98888888899999999984
No 38
>PRK06298 type III secretion system protein; Validated
Probab=42.94 E-value=36 Score=31.02 Aligned_cols=74 Identities=20% Similarity=0.277 Sum_probs=50.2
Q ss_pred CCCCCCcEEEeccCCcccccCCCCCCCCCChHH---HHHHHHHHhhhcCCCCCCCcchhhhhhcceeeecccccchhhcc
Q 040100 19 NPREGKFLVGLQFHSERMRLSSSEEFDYPGCPI---AVIAYQKRMNRASYVPNFIPLKQKIGKSKVLVKSFSPAKDINIS 95 (177)
Q Consensus 19 nP~e~~FilGVQWHPE~M~~~~~~~fDy~g~~~---Av~ayqkk~~~~~~~~~~~~l~~~mekrk~ivrsfslAk~~y~~ 95 (177)
||. +|.+|+.|+|+.+.. ...--.|-+. ..+++.++- .+ -||+.=+|||.||..
T Consensus 263 NPT--H~AVALkYd~~~~~A---P~VvAKG~d~~A~~Ir~iA~e~----~V--------------Piven~pLARaLy~~ 319 (356)
T PRK06298 263 NPK--DIAVAIGYMPEKYKA---PWIIAMGINLRAKRIIAEAEKY----GV--------------PIMRNVPLAHQLLDE 319 (356)
T ss_pred CCC--ceEEEeEeCCCCCCC---CEEEEeeCcHHHHHHHHHHHHc----CC--------------CEEeCHHHHHHHHHc
Confidence 674 699999999986643 1122222222 222222222 22 378888999999998
Q ss_pred CCCCCCCchhhhHhhhhhhh
Q 040100 96 GQTAHPSEESELQAVAEFLE 115 (177)
Q Consensus 96 ~~~~~~~~~~el~~gaefle 115 (177)
......-.++-.++.||.|-
T Consensus 320 ~evg~~IP~ely~AVA~IL~ 339 (356)
T PRK06298 320 GKELKFIPESTYEAIGEILL 339 (356)
T ss_pred CCCCCcCCHHHHHHHHHHHH
Confidence 88888888899999999983
No 39
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=42.60 E-value=36 Score=30.71 Aligned_cols=76 Identities=20% Similarity=0.247 Sum_probs=48.9
Q ss_pred CCCCCCcEEEeccCCcccccCCCCCCCCCChHHHHHHHHHHhhhcCCCCCCCcchhhhhhcceeeecccccchhhccCCC
Q 040100 19 NPREGKFLVGLQFHSERMRLSSSEEFDYPGCPIAVIAYQKRMNRASYVPNFIPLKQKIGKSKVLVKSFSPAKDINISGQT 98 (177)
Q Consensus 19 nP~e~~FilGVQWHPE~M~~~~~~~fDy~g~~~Av~ayqkk~~~~~~~~~~~~l~~~mekrk~ivrsfslAk~~y~~~~~ 98 (177)
||. +|.++++|+|+.|.. ...--.|-+. .|-+-+..+ -|.+=-||+.=+|||.||..-..
T Consensus 261 NPT--H~AVAL~Yd~~~~~A---P~VvAKG~d~--~A~~Ir~iA-------------~e~~VPiven~pLAR~Ly~~~ev 320 (342)
T TIGR01404 261 NPT--HIAIGIYYKPGETPL---PLIICKGTDA--QALAVRAYA-------------EEAGIPVVRDIPLARQLYRTARV 320 (342)
T ss_pred CCc--eeEEEeEECCCCCCC---CEEEEeeCcH--HHHHHHHHH-------------HHcCCCEeeCHHHHHHHHHcCCC
Confidence 674 699999999996654 1222233322 111111111 01222378889999999987777
Q ss_pred CCCCchhhhHhhhhhh
Q 040100 99 AHPSEESELQAVAEFL 114 (177)
Q Consensus 99 ~~~~~~~el~~gaefl 114 (177)
...-.++-.++.||+|
T Consensus 321 g~~IP~ely~aVA~IL 336 (342)
T TIGR01404 321 GQYIPEELFEAVAELL 336 (342)
T ss_pred CCcCCHHHHHHHHHHH
Confidence 7777788999999988
No 40
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=40.02 E-value=41 Score=32.65 Aligned_cols=77 Identities=18% Similarity=0.187 Sum_probs=49.9
Q ss_pred CCCCCCcEEEeccCCcccccCCCCCCCCCChHHHHHHHHHHhhhcCCCCCCCcchhhhhhcceeeecccccchhhccCCC
Q 040100 19 NPREGKFLVGLQFHSERMRLSSSEEFDYPGCPIAVIAYQKRMNRASYVPNFIPLKQKIGKSKVLVKSFSPAKDINISGQT 98 (177)
Q Consensus 19 nP~e~~FilGVQWHPE~M~~~~~~~fDy~g~~~Av~ayqkk~~~~~~~~~~~~l~~~mekrk~ivrsfslAk~~y~~~~~ 98 (177)
||. +|.+|++|+|+.+.. ...--.|-+. .|-+-|..+ -|..=-+|+.-+|||.+|.....
T Consensus 525 NPT--H~AVAL~Y~~~~~~a---P~VvAKG~d~--~A~~Ir~~A-------------~e~~VPive~~~LAR~Ly~~~ev 584 (609)
T PRK12772 525 NPT--HIAVALKYEEGKDEA---PKVVAKGADY--VALKIKEIA-------------KENDVPIIENKPLARLIYKKVEI 584 (609)
T ss_pred CCC--ceEEEeEeCCCCCCC---CEEEEeeCcH--HHHHHHHHH-------------HHCCCcEEeCHHHHHHHHHcCCC
Confidence 774 699999999997644 1122223222 111222111 01222378889999999988877
Q ss_pred CCCCchhhhHhhhhhhh
Q 040100 99 AHPSEESELQAVAEFLE 115 (177)
Q Consensus 99 ~~~~~~~el~~gaefle 115 (177)
...-.+.-.++.||.|-
T Consensus 585 g~~IP~ely~aVA~iL~ 601 (609)
T PRK12772 585 DQEIPQDMYQAVAEILA 601 (609)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 77788899999999983
No 41
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=39.91 E-value=48 Score=30.24 Aligned_cols=73 Identities=19% Similarity=0.253 Sum_probs=48.5
Q ss_pred CCCCCCcEEEeccCCcccccCCCCCCCCCChHH---HHHHHHHHhhhcCCCCCCCcchhhhhhcceeeecccccchhhcc
Q 040100 19 NPREGKFLVGLQFHSERMRLSSSEEFDYPGCPI---AVIAYQKRMNRASYVPNFIPLKQKIGKSKVLVKSFSPAKDINIS 95 (177)
Q Consensus 19 nP~e~~FilGVQWHPE~M~~~~~~~fDy~g~~~---Av~ayqkk~~~~~~~~~~~~l~~~mekrk~ivrsfslAk~~y~~ 95 (177)
||. +|.+|+.|+|+.+.. ...--.|.+. .+++..++ ..=-|++.-.|||.||..
T Consensus 269 NPT--H~AVal~Y~~~~~~a---P~vvakg~~~~A~~i~~~A~~------------------~~vpi~~~~~LAr~Ly~~ 325 (359)
T PRK05702 269 NPT--HYAVALKYDRGKMAA---PVVVAKGVDEVALKIREIARE------------------HNVPIVENPPLARALYAT 325 (359)
T ss_pred CCC--ceEEEeEeCCCCCCC---CEEEEeeCcHHHHHHHHHHHH------------------cCCCEEeCHHHHHHHHHc
Confidence 674 699999999985543 2222333333 23332222 122378888999999976
Q ss_pred CCCCCCCchhhhHhhhhhh
Q 040100 96 GQTAHPSEESELQAVAEFL 114 (177)
Q Consensus 96 ~~~~~~~~~~el~~gaefl 114 (177)
-.....-.+..+++.|+.|
T Consensus 326 ~~~g~~Ip~~~~~aVA~il 344 (359)
T PRK05702 326 VEIGQEIPEELYKAVAEVL 344 (359)
T ss_pred CCCCCccCHHHHHHHHHHH
Confidence 6666677889999999998
No 42
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=39.67 E-value=47 Score=30.71 Aligned_cols=77 Identities=19% Similarity=0.235 Sum_probs=50.1
Q ss_pred CCCCCCcEEEeccCCcccccCCCCCCCCCChHHHHHHHHHHhhhcCCCCCCCcchhhhhhcceeeecccccchhhccCCC
Q 040100 19 NPREGKFLVGLQFHSERMRLSSSEEFDYPGCPIAVIAYQKRMNRASYVPNFIPLKQKIGKSKVLVKSFSPAKDINISGQT 98 (177)
Q Consensus 19 nP~e~~FilGVQWHPE~M~~~~~~~fDy~g~~~Av~ayqkk~~~~~~~~~~~~l~~~mekrk~ivrsfslAk~~y~~~~~ 98 (177)
||. +|.+++.|+|+.+.. ...--.|-+. +...-+....... =-||+.-.|||.||.....
T Consensus 269 NPT--H~AVALkY~~~~~~A---P~VvAKG~d~-~A~~Ir~~A~e~~--------------VPiven~pLARaLy~~~ev 328 (386)
T PRK12468 269 NPT--HYAVALQYNESKMSA---PKVLAKGAGA-VALRIRELGAEHR--------------IPLLEAPPLARALFRHSEV 328 (386)
T ss_pred CCC--ceEEEEEeCCCCCCC---CEEEEeeCcH-HHHHHHHHHHHcC--------------CcEEeCHHHHHHHHHhCCC
Confidence 674 699999999996643 1122222222 1111222222122 2378889999999988877
Q ss_pred CCCCchhhhHhhhhhhh
Q 040100 99 AHPSEESELQAVAEFLE 115 (177)
Q Consensus 99 ~~~~~~~el~~gaefle 115 (177)
...-.+.-.++.||.|-
T Consensus 329 g~~IP~ely~AVA~ILa 345 (386)
T PRK12468 329 GQHIPATLYAAVAEVLA 345 (386)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 77788899999999993
No 43
>PRK09108 type III secretion system protein HrcU; Validated
Probab=37.27 E-value=53 Score=29.90 Aligned_cols=76 Identities=20% Similarity=0.242 Sum_probs=47.6
Q ss_pred CCCCCCcEEEeccCCcccccCCCCCCCCCChHHHHHHHHHHhhhcCCCCCCCcchhhhhhcceeeecccccchhhccCCC
Q 040100 19 NPREGKFLVGLQFHSERMRLSSSEEFDYPGCPIAVIAYQKRMNRASYVPNFIPLKQKIGKSKVLVKSFSPAKDINISGQT 98 (177)
Q Consensus 19 nP~e~~FilGVQWHPE~M~~~~~~~fDy~g~~~Av~ayqkk~~~~~~~~~~~~l~~~mekrk~ivrsfslAk~~y~~~~~ 98 (177)
||. +|.++++|+|+.+.. ...--.|-+.-+ ..-++..... .=-||+.-.|||.|| .-..
T Consensus 264 NPT--H~AVAL~Y~~~~~~A---P~VvAKG~d~~A-~~Ir~~A~e~--------------~VPvven~pLARaLy-~~~v 322 (353)
T PRK09108 264 NPT--HYAVALRYAPDEHPL---PRVIAKGVDDGA-LALRRHAHAL--------------GIPIVGNPPVARALY-RVEL 322 (353)
T ss_pred CCC--ceEEEeEeCCCCCCC---CEEEEEeCcHHH-HHHHHHHHHc--------------CCCEEeCHHHHHHHh-cCCC
Confidence 674 699999999996654 222233333311 1111111111 223788889999999 4555
Q ss_pred CCCCchhhhHhhhhhhh
Q 040100 99 AHPSEESELQAVAEFLE 115 (177)
Q Consensus 99 ~~~~~~~el~~gaefle 115 (177)
...-.+.-.++.||.|-
T Consensus 323 g~~IP~ely~aVA~iL~ 339 (353)
T PRK09108 323 DEPIPEELFETVAAILR 339 (353)
T ss_pred CCcCCHHHHHHHHHHHH
Confidence 66667788999999985
No 44
>PF01312 Bac_export_2: FlhB HrpN YscU SpaS Family; InterPro: IPR006135 Salmonella, and related proteobacteria, secrete large amounts of proteins into the culture media. The major secreted proteins are either flagellar proteins or virulence factors [], secreted through the flagellar or virulence export structures respectively. Both secretion systems penetrate the inner and outer membranes and their components bear substantial sequence similarity. Both the flagellar and needle like pilus look fairly similar to each other []. The type III secretion system is of great interest, as it is used to transport virulence factors from the pathogen directly into the host cell [] and is only triggered when the bacterium comes into close contact with the host. It is believed that the family of type III flagellar and pilus inner membrane proteins are used as structural moieties in a complex with several other subunits []. One such set of inner membrane proteins, labeled "S" here for nomenclature purposes, includes the Salmonella and Shigella SpaS, the Yersinia YscU, Rhizobium Y4YO, and the Erwinia HrcU genes, Salmonella FlhB and Escherichia coli EscU [, , , ]. Many of the proteins, in this entry, undergo autocatalytic cleavage promoted by cyclization of a conserved asparagine. These proteins belong to the MEROPS peptidase family N6. ; GO: 0009306 protein secretion, 0016020 membrane; PDB: 3C03_C 3BZT_A 3BZV_B 3BZP_A 3BZX_B 3BZL_B 3C00_A 3BZR_A 3BZY_A 3BZO_A ....
Probab=35.21 E-value=21 Score=32.05 Aligned_cols=73 Identities=19% Similarity=0.236 Sum_probs=45.5
Q ss_pred CCCCCCcEEEeccCCcccccCCCCCCCCCChHH---HHHHHHHHhhhcCCCCCCCcchhhhhhcceeeecccccchhhcc
Q 040100 19 NPREGKFLVGLQFHSERMRLSSSEEFDYPGCPI---AVIAYQKRMNRASYVPNFIPLKQKIGKSKVLVKSFSPAKDINIS 95 (177)
Q Consensus 19 nP~e~~FilGVQWHPE~M~~~~~~~fDy~g~~~---Av~ayqkk~~~~~~~~~~~~l~~~mekrk~ivrsfslAk~~y~~ 95 (177)
||. +|.++++|+|+.+..+ ..--.|.+. ..+++.++- .--||+.=.|||.||..
T Consensus 264 NPT--H~AVAL~Y~~~~~~aP---~vvAKG~d~~A~~Ir~~A~~~------------------~VPiven~pLARaLy~~ 320 (343)
T PF01312_consen 264 NPT--HYAVALRYDPGEMPAP---IVVAKGADELALRIREIAREH------------------GVPIVENPPLARALYRT 320 (343)
T ss_dssp ETT--TEEEEEEEETTTCSSE---EEEEEEECHHHHHHHHHHHHH------------------T--EEE-HHHHHHHHHH
T ss_pred CCc--ceeEEEEeCCCCCCCC---EEeeeccHHHHHHHHHHHHHc------------------CCCeeeCHHHHHHHHhc
Confidence 563 6999999999866441 122223322 233332222 12378888999999999
Q ss_pred CCCCCCCchhhhHhhhhhh
Q 040100 96 GQTAHPSEESELQAVAEFL 114 (177)
Q Consensus 96 ~~~~~~~~~~el~~gaefl 114 (177)
......-.+.-.++.||.|
T Consensus 321 ~~~g~~IP~ely~aVA~il 339 (343)
T PF01312_consen 321 VEVGQEIPEELYEAVAEIL 339 (343)
T ss_dssp S-TTSB--GGGHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHH
Confidence 8887777788999999987
No 45
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=33.61 E-value=70 Score=29.06 Aligned_cols=74 Identities=19% Similarity=0.222 Sum_probs=49.9
Q ss_pred CCCCCCcEEEeccCCcccccCCCCCCCCCChHH---HHHHHHHHhhhcCCCCCCCcchhhhhhcceeeecccccchhhcc
Q 040100 19 NPREGKFLVGLQFHSERMRLSSSEEFDYPGCPI---AVIAYQKRMNRASYVPNFIPLKQKIGKSKVLVKSFSPAKDINIS 95 (177)
Q Consensus 19 nP~e~~FilGVQWHPE~M~~~~~~~fDy~g~~~---Av~ayqkk~~~~~~~~~~~~l~~~mekrk~ivrsfslAk~~y~~ 95 (177)
||. +|.+|+.|+|+.+.. ...--.|-+. .++++.++.. =-|++.=.|||.||..
T Consensus 262 NPT--H~AVal~Y~~~~~~a---P~vvakG~~~~A~~I~~~A~~~~------------------vPi~~~~~LAr~Ly~~ 318 (347)
T TIGR00328 262 NPT--HYAVALKYDPGKMPA---PVVVAKGVDELALKIKEIARENN------------------VPIVENPPLARALYRQ 318 (347)
T ss_pred CCC--ceEEEeEeCCCCCCC---CEEEEeeCcHHHHHHHHHHHHcC------------------CCEEeCHHHHHHHHHc
Confidence 674 699999999985443 2222333333 4444444422 2377888999999977
Q ss_pred CCCCCCCchhhhHhhhhhhh
Q 040100 96 GQTAHPSEESELQAVAEFLE 115 (177)
Q Consensus 96 ~~~~~~~~~~el~~gaefle 115 (177)
-.....-.+..+++.||.|-
T Consensus 319 ~~~g~~IP~~ly~aVA~il~ 338 (347)
T TIGR00328 319 VEIGQEIPPELYKAVAEVLA 338 (347)
T ss_pred CCCCCcCCHHHHHHHHHHHH
Confidence 66666777889999999883
No 46
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=31.62 E-value=36 Score=21.93 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=19.8
Q ss_pred cCcCcchhhHHHHHHHhhchhhhccc
Q 040100 118 IAAPGFQEYEMSLRLMQMGAAVRNSS 143 (177)
Q Consensus 118 tals~qq~~~~e~RLkqmGAtvRN~~ 143 (177)
+.++..+.-++++.++++|++|.+.-
T Consensus 14 ~~~~~~~~~~l~~~i~~~GG~v~~~~ 39 (78)
T PF00533_consen 14 SGFDSDEREELEQLIKKHGGTVSNSF 39 (78)
T ss_dssp SSTSSSHHHHHHHHHHHTTEEEESSS
T ss_pred ccCCCCCHHHHHHHHHHcCCEEEeec
Confidence 34566667788999999999995543
No 47
>PF14124 DUF4291: Domain of unknown function (DUF4291)
Probab=30.45 E-value=25 Score=29.96 Aligned_cols=34 Identities=21% Similarity=0.131 Sum_probs=22.2
Q ss_pred EEEeccCCcccccCCCCCCCCCCh-----HHHHHHHHHHhh
Q 040100 26 LVGLQFHSERMRLSSSEEFDYPGC-----PIAVIAYQKRMN 61 (177)
Q Consensus 26 ilGVQWHPE~M~~~~~~~fDy~g~-----~~Av~ayqkk~~ 61 (177)
-+=|||+||+.... ...+|... +.++..|...-.
T Consensus 108 ~VrvQWDPErd~~~--~~L~~RsIQiGl~g~~~~~y~~eWi 146 (181)
T PF14124_consen 108 PVRVQWDPERDPRG--NPLPRRSIQIGLRGEAVRRYADEWI 146 (181)
T ss_pred CeEEEECcccCCCC--CcCCceeEEecCCHHHHHHhHhhcE
Confidence 47899999976543 34455543 347777776654
No 48
>PRK12773 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=29.08 E-value=76 Score=31.86 Aligned_cols=77 Identities=18% Similarity=0.164 Sum_probs=48.7
Q ss_pred CCCCCCcEEEeccCCcccccCCCCCCCCCChHHHHHHHHHHhhhcCCCCCCCcchhhhhhcceeeecccccchhhccCCC
Q 040100 19 NPREGKFLVGLQFHSERMRLSSSEEFDYPGCPIAVIAYQKRMNRASYVPNFIPLKQKIGKSKVLVKSFSPAKDINISGQT 98 (177)
Q Consensus 19 nP~e~~FilGVQWHPE~M~~~~~~~fDy~g~~~Av~ayqkk~~~~~~~~~~~~l~~~mekrk~ivrsfslAk~~y~~~~~ 98 (177)
||. +|.+|+.|+|+.+..+ ..--.|-.. +...-+......-+ -||+.=+|||.||.+-..
T Consensus 561 NPT--HyAVALKYdp~~~~AP---iVVAKG~D~-lAlrIReiAeE~gV--------------PIVENpPLARALY~~veV 620 (646)
T PRK12773 561 NPT--HFAVALEYKPGIHKAP---IVIAKGVDD-FALLIIRIARENGV--------------PTVEDRLQARGLYEEVEL 620 (646)
T ss_pred CCC--ceEEEEEECCCCCCCC---EEEEEeCcH-HHHHHHHHHHHcCC--------------cEEECHHHHHHHHHcCCC
Confidence 674 6999999999865441 111122211 11122222222222 378888999999987777
Q ss_pred CCCCchhhhHhhhhhhh
Q 040100 99 AHPSEESELQAVAEFLE 115 (177)
Q Consensus 99 ~~~~~~~el~~gaefle 115 (177)
...-.+.-.++.||.|-
T Consensus 621 Gq~IP~eLYeAVAeILa 637 (646)
T PRK12773 621 GAEVPQQFYRAIATILS 637 (646)
T ss_pred CCcCCHHHHHHHHHHHH
Confidence 77778888999999983
No 49
>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown. It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.
Probab=29.07 E-value=58 Score=23.06 Aligned_cols=29 Identities=17% Similarity=0.286 Sum_probs=22.7
Q ss_pred cccCCCceeEEEcCCCCCCCCCCcEEEeccCCcccc
Q 040100 2 AFAPDGLIEGFYDPEAYNPREGKFLVGLQFHSERMR 37 (177)
Q Consensus 2 A~A~DGvIEAIE~~d~ynP~e~~FilGVQWHPE~M~ 37 (177)
+.++||+|...-+.+ .-++.+.++|+.+.
T Consensus 25 ~~s~~g~V~V~v~g~-------g~v~~i~i~~~~~~ 53 (93)
T PF02575_consen 25 GTSGDGLVTVTVNGN-------GEVVDIEIDPSALR 53 (93)
T ss_dssp EEETCCTEEEEEETT-------S-EEEEEE-GGGGC
T ss_pred EEECCCEEEEEEecC-------ceEEEEEEehHhhc
Confidence 678999999997654 36999999999876
No 50
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=28.51 E-value=47 Score=29.66 Aligned_cols=27 Identities=26% Similarity=0.148 Sum_probs=20.7
Q ss_pred cccCCCceeEEEcCCCCCCCCCCcEEEeccCCccc
Q 040100 2 AFAPDGLIEGFYDPEAYNPREGKFLVGLQFHSERM 36 (177)
Q Consensus 2 A~A~DGvIEAIE~~d~ynP~e~~FilGVQWHPE~M 36 (177)
|.+++==+|.++.++ -++++|-|||+-
T Consensus 169 asSe~ceve~fs~~~--------~~l~fQGHPEyn 195 (245)
T KOG3179|consen 169 ASSEKCEVEMFSIED--------HLLCFQGHPEYN 195 (245)
T ss_pred ccccccceEEEEecc--------eEEEecCCchhh
Confidence 556677788887665 479999999963
No 51
>PF00767 Poty_coat: Potyvirus coat protein; InterPro: IPR001592 This protease is found in genome polyproteins of potyviruses. The genome polyprotein contains: N-terminal protein (P1), helper component protease (3.4.22 from EC, HC-PRO), protein P3, 6KD protein (6K1), cytoplasmic inclusion protein (CI), 6KD protein 2 (6K2), genome-linked protein (VPG), nuclear inclusion protein A (3.4.22 from EC), nuclear inclusion protein B (2.7.7.48 from EC) and coat protein (CP). The coat protein is at the C terminus of the polyprotein.; GO: 0019028 viral capsid
Probab=27.75 E-value=54 Score=28.72 Aligned_cols=68 Identities=25% Similarity=0.291 Sum_probs=46.0
Q ss_pred HHHHHHHHHhhhc-CCCCCCCcchhhhhhcceeeecccccchhhccCCCCCCCchhhhHhhhhhhhhccCcCcchhhHHH
Q 040100 51 IAVIAYQKRMNRA-SYVPNFIPLKQKIGKSKVLVKSFSPAKDINISGQTAHPSEESELQAVAEFLESDIAAPGFQEYEMS 129 (177)
Q Consensus 51 ~Av~ayqkk~~~~-~~~~~~~~l~~~mekrk~ivrsfslAk~~y~~~~~~~~~~~~el~~gaefle~ntals~qq~~~~e 129 (177)
.++.+|...+++. .++|+- -.|-=++.+|+|+. +-.|.+.+...+... -
T Consensus 136 d~aeayie~rn~~~~ymPry--------g~~rnl~d~sla~y------------------aFDFy~~ts~tp~ra----r 185 (237)
T PF00767_consen 136 DAAEAYIEMRNSEEPYMPRY--------GLQRNLTDMSLARY------------------AFDFYEVTSRTPARA----R 185 (237)
T ss_pred HHHHHHHHHhcccCCchhhh--------hhhcCCccccccce------------------eeeEeecCCCCCHHH----H
Confidence 3788888777642 333332 11222567777765 557888887777766 6
Q ss_pred HHHHhh-chhhhccccee-ee
Q 040100 130 LRLMQM-GAAVRNSSSYL-RM 148 (177)
Q Consensus 130 ~RLkqm-GAtvRN~~~y~-rl 148 (177)
+=+.|| -|.|||++..| -|
T Consensus 186 Ea~~QmKaAAl~~~~~rlfgl 206 (237)
T PF00767_consen 186 EAHNQMKAAALRGTKNRLFGL 206 (237)
T ss_pred HHHHHHHHHhhccccCceeee
Confidence 668888 67899999988 76
No 52
>KOG1234 consensus ABC (ATP binding cassette) 1 protein [General function prediction only]
Probab=22.64 E-value=32 Score=32.22 Aligned_cols=45 Identities=20% Similarity=0.134 Sum_probs=35.2
Q ss_pred cCcchhhHHHHHHHhhchhhhccccee-eeeeCCCC--CchhHHHhhc
Q 040100 120 APGFQEYEMSLRLMQMGAAVRNSSSYL-RMKLNPDK--MLPSNVLGAM 164 (177)
Q Consensus 120 ls~qq~~~~e~RLkqmGAtvRN~~~y~-rlk~~e~r--~~ar~~m~~m 164 (177)
||.|-+--+-.+|-|.+-+||++..+| +=.++..+ .+..+|+.|.
T Consensus 2 LSiQD~~ll~p~l~qi~erVrqsAd~MP~~Ql~~vm~~~lG~nW~~Kf 49 (363)
T KOG1234|consen 2 LSIQDGSLLPPTLGQILERVRQSADFMPPKQLEPVMWGELGGNWAQKF 49 (363)
T ss_pred cccccCCccCHHHHHHHHHhcCccccCChhhhhHHHhhhhchhHHHHH
Confidence 455554445567889999999999999 77787777 7888888776
No 53
>PRK00153 hypothetical protein; Validated
Probab=22.11 E-value=81 Score=23.51 Aligned_cols=48 Identities=15% Similarity=0.256 Sum_probs=35.9
Q ss_pred HHHHHHHhhchhhhcccceeeeeeCCCC-----CchhHHHhhcChHHhhhccc
Q 040100 127 EMSLRLMQMGAAVRNSSSYLRMKLNPDK-----MLPSNVLGAMSTGQLSNLMC 174 (177)
Q Consensus 127 ~~e~RLkqmGAtvRN~~~y~rlk~~e~r-----~~ar~~m~~ms~~qls~l~~ 174 (177)
++.++|+++-.|..-+.+-.++.+|... .+.-.++.....+.|++|+-
T Consensus 21 ~~q~~l~~~~~~~~s~~G~V~V~v~G~~~v~~i~Id~~ll~~~d~e~LedlI~ 73 (104)
T PRK00153 21 KMQEELAQMEVEGEAGGGLVKVTMTGKKEVKRVKIDPSLVDPEDVEMLEDLIL 73 (104)
T ss_pred HHHHHHhccEEEEEECCCeEEEEEecCceEEEEEECHHHcCCcCHHHHHHHHH
Confidence 4578899999888887777777777655 45566777778888888763
Done!