Query 040100
Match_columns 177
No_of_seqs 190 out of 826
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 07:44:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040100.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040100hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fij_A LIN1909 protein; 11172J 98.8 1.7E-10 5.9E-15 93.5 -2.0 53 1-59 192-246 (254)
2 2v4u_A CTP synthase 2; pyrimid 98.7 1.5E-09 5.1E-14 90.4 1.1 54 1-60 227-281 (289)
3 2w7t_A CTP synthetase, putativ 98.7 3.5E-09 1.2E-13 87.4 1.0 50 1-56 203-257 (273)
4 1l9x_A Gamma-glutamyl hydrolas 98.0 1.3E-06 4.4E-11 73.5 1.9 33 1-37 214-246 (315)
5 1o1y_A Conserved hypothetical 97.7 1.2E-05 4E-10 64.7 2.2 27 1-36 163-189 (239)
6 2ywb_A GMP synthase [glutamine 97.6 2.4E-05 8.1E-10 69.6 2.6 30 1-37 140-169 (503)
7 1gpm_A GMP synthetase, XMP ami 97.5 2.8E-05 9.5E-10 69.6 2.5 30 1-37 157-186 (525)
8 3l7n_A Putative uncharacterize 97.5 2.9E-05 9.9E-10 61.8 1.8 28 1-36 156-183 (236)
9 1s1m_A CTP synthase; CTP synth 97.5 2.5E-05 8.7E-10 71.9 1.4 38 23-60 506-543 (545)
10 3m3p_A Glutamine amido transfe 97.4 4.9E-05 1.7E-09 62.5 2.4 28 1-36 153-180 (250)
11 1vco_A CTP synthetase; tetrame 97.2 4.7E-05 1.6E-09 70.2 -0.0 37 23-59 513-549 (550)
12 3tqi_A GMP synthase [glutamine 97.2 0.00016 5.4E-09 64.9 3.0 30 1-37 160-189 (527)
13 3uow_A GMP synthetase; structu 97.1 0.00023 7.9E-09 64.6 2.9 31 1-38 185-215 (556)
14 1jvn_A Glutamine, bifunctional 97.0 0.00012 4.1E-09 66.2 0.5 26 2-36 172-200 (555)
15 2vxo_A GMP synthase [glutamine 96.8 0.00055 1.9E-08 64.2 3.1 28 2-37 172-199 (697)
16 3d54_D Phosphoribosylformylgly 96.5 0.00086 3E-08 51.1 1.8 16 23-38 177-192 (213)
17 1q7r_A Predicted amidotransfer 96.3 0.00083 2.9E-08 52.7 0.8 30 24-57 184-213 (219)
18 1a9x_B Carbamoyl phosphate syn 96.3 0.0011 3.9E-08 58.2 1.5 35 24-58 344-378 (379)
19 2a9v_A GMP synthase; structura 96.2 0.00076 2.6E-08 53.1 0.2 34 24-58 171-204 (212)
20 2abw_A PDX2 protein, glutamina 95.5 0.0032 1.1E-07 49.2 0.7 31 24-58 188-218 (227)
21 2vpi_A GMP synthase; guanine m 94.8 0.011 3.6E-07 47.1 1.8 14 24-37 181-194 (218)
22 3r75_A Anthranilate/para-amino 87.7 0.18 6.3E-06 46.9 1.7 13 25-37 606-618 (645)
23 2h2w_A Homoserine O-succinyltr 82.3 0.87 3E-05 39.2 3.2 29 2-37 223-251 (312)
24 2vdj_A Homoserine O-succinyltr 82.0 0.7 2.4E-05 39.4 2.5 29 2-37 212-240 (301)
25 2jli_A YSCU, YOP proteins tran 24.2 63 0.0021 24.6 3.3 73 19-114 44-119 (123)
26 3t7y_A YOP proteins translocat 22.9 64 0.0022 23.5 3.0 71 24-115 18-91 (97)
27 2jlj_A YSCU, YOP proteins tran 21.5 59 0.002 25.3 2.7 71 24-115 56-129 (144)
28 3bzs_A ESCU; auto cleavage pro 21.5 61 0.0021 25.0 2.8 74 19-115 54-130 (137)
No 1
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=98.83 E-value=1.7e-10 Score=93.47 Aligned_cols=53 Identities=23% Similarity=0.238 Sum_probs=38.8
Q ss_pred CcccCCCceeEEEcC-CCCCCCCCCcEEEeccCCcccccCCCC-CCCCCChHHHHHHHHHH
Q 040100 1 MAFAPDGLIEGFYDP-EAYNPREGKFLVGLQFHSERMRLSSSE-EFDYPGCPIAVIAYQKR 59 (177)
Q Consensus 1 ~A~A~DGvIEAIE~~-d~ynP~e~~FilGVQWHPE~M~~~~~~-~fDy~g~~~Av~ayqkk 59 (177)
+|+++||+||||+.+ + ++|++|||||||++...+.. ..-|..|.++|..|..|
T Consensus 192 ~a~s~dg~ieai~~~~~------~~~~~gvQfHPE~~~~~~~~~~~lf~~Fv~~~~~~~~~ 246 (254)
T 3fij_A 192 TARTADGMIEAVEGDNL------PSWYLGVQWHPELMFQTDPESEQLFQALVDESKKTMVK 246 (254)
T ss_dssp EEEETTCCEEEEEESSC------SSCEEEESSCGGGTGGGCHHHHHHHHHHHHHHHSCC--
T ss_pred EEEeCCCcEEEEEecCC------CCeEEEEEcCCccCCCCCchHHHHHHHHHHHHHHHHhh
Confidence 378899999999998 7 67999999999987643211 23367778887766544
No 2
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=98.75 E-value=1.5e-09 Score=90.43 Aligned_cols=54 Identities=22% Similarity=0.225 Sum_probs=40.1
Q ss_pred CcccCCCc-eeEEEcCCCCCCCCCCcEEEeccCCcccccCCCCCCCCCChHHHHHHHHHHh
Q 040100 1 MAFAPDGL-IEGFYDPEAYNPREGKFLVGLQFHSERMRLSSSEEFDYPGCPIAVIAYQKRM 60 (177)
Q Consensus 1 ~A~A~DGv-IEAIE~~d~ynP~e~~FilGVQWHPE~M~~~~~~~fDy~g~~~Av~ayqkk~ 60 (177)
+|+++||. ||||+.++ .+|++|||||||++........-|..|..+|+.+....
T Consensus 227 ~A~s~dg~~ieaie~~~------~p~~lGvQfHPE~~~~~~~~~~lf~~Fv~~~~~~~~~~ 281 (289)
T 2v4u_A 227 VGQDVDGDRMEIIELAN------HPYFVGVQFHPEFSSRPMKPSPPYLGLLLAATGNLNAY 281 (289)
T ss_dssp EEEETTSCSEEEEEESS------SSCEEEESSBGGGGCBTTBCCHHHHHHHHHHHTCHHHH
T ss_pred EEEcCCCCeEEEEEcCC------CCeEEEEECCCCCCCCCCchHHHHHHHHHHHHhhhhhh
Confidence 47789997 99999987 68999999999998753322333677777776655543
No 3
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=98.67 E-value=3.5e-09 Score=87.36 Aligned_cols=50 Identities=20% Similarity=0.248 Sum_probs=37.5
Q ss_pred CcccCC----C-ceeEEEcCCCCCCCCCCcEEEeccCCcccccCCCCCCCCCChHHHHHHH
Q 040100 1 MAFAPD----G-LIEGFYDPEAYNPREGKFLVGLQFHSERMRLSSSEEFDYPGCPIAVIAY 56 (177)
Q Consensus 1 ~A~A~D----G-vIEAIE~~d~ynP~e~~FilGVQWHPE~M~~~~~~~fDy~g~~~Av~ay 56 (177)
+|+++| | +||||+..+ .+|++|||||||.+........-|..|..+|..+
T Consensus 203 ~A~s~d~~~~g~~ieaie~~~------~p~~~GvQfHPE~~~~~~~~~~l~~~Fv~~~~~~ 257 (273)
T 2w7t_A 203 SAVTDPTFSSRCRVEAVENPS------LRFFLAVQFHPEFISTPMDPAPTYLSFMAAAAKK 257 (273)
T ss_dssp EEESCTTCCTTCCEEEEECTT------SSSEEEESSCGGGSCBTTBCCHHHHHHHHHHHTC
T ss_pred EEEcCCcCCCCCeEEEEEcCC------CCeEEEEeCCCCcCCCCCchHHHHHHHHHHHHHH
Confidence 378888 7 999999887 6899999999998765332233466777777554
No 4
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=98.03 E-value=1.3e-06 Score=73.52 Aligned_cols=33 Identities=27% Similarity=0.301 Sum_probs=23.9
Q ss_pred CcccCCCceeEEEcCCCCCCCCCCcEEEeccCCcccc
Q 040100 1 MAFAPDGLIEGFYDPEAYNPREGKFLVGLQFHSERMR 37 (177)
Q Consensus 1 ~A~A~DGvIEAIE~~d~ynP~e~~FilGVQWHPE~M~ 37 (177)
+|+++||+||||+... .+ +.+++|||||||...
T Consensus 214 ~A~s~dg~ve~i~~i~--~~--~~~i~GVQfHPE~~~ 246 (315)
T 1l9x_A 214 LTTNTDGKIEFISTME--GY--KYPVYGVQWHPEKAP 246 (315)
T ss_dssp EEEEESSSCEEEEEEE--ES--SSCEEEESSCTTHHH
T ss_pred EEEcCCCCEEEEEEec--cC--CCCEEEEEeCCCCCc
Confidence 3788999999886432 01 136899999999854
No 5
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=97.70 E-value=1.2e-05 Score=64.69 Aligned_cols=27 Identities=37% Similarity=0.327 Sum_probs=22.7
Q ss_pred CcccCCCceeEEEcCCCCCCCCCCcEEEeccCCccc
Q 040100 1 MAFAPDGLIEGFYDPEAYNPREGKFLVGLQFHSERM 36 (177)
Q Consensus 1 ~A~A~DGvIEAIE~~d~ynP~e~~FilGVQWHPE~M 36 (177)
+|+++||.||||+.. . ++|||||||..
T Consensus 163 lA~s~~~~iea~~~~--------~-i~gvQfHPE~~ 189 (239)
T 1o1y_A 163 VFTSEKYENQGFVYG--------K-AVGLQFHIEVG 189 (239)
T ss_dssp EEECSSCSCSEEEET--------T-EEEESSBSSCC
T ss_pred EEEcCCCCEEEEEEC--------C-EEEEEeCccCC
Confidence 367899999999963 3 89999999974
No 6
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=97.59 E-value=2.4e-05 Score=69.58 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=25.4
Q ss_pred CcccCCCceeEEEcCCCCCCCCCCcEEEeccCCcccc
Q 040100 1 MAFAPDGLIEGFYDPEAYNPREGKFLVGLQFHSERMR 37 (177)
Q Consensus 1 ~A~A~DGvIEAIE~~d~ynP~e~~FilGVQWHPE~M~ 37 (177)
+|+++||.|+||+.++ .+++|||||||...
T Consensus 140 ~A~s~~~~i~ai~~~~-------~~~~gvQFHPE~~~ 169 (503)
T 2ywb_A 140 VAETEENPVAAIASPD-------GRAYGVQFHPEVAH 169 (503)
T ss_dssp EEECSSCSCSEEECTT-------SSEEEESBCTTSTT
T ss_pred EEEECCCCEEEEEeCC-------CCEEEEecCCCccc
Confidence 3778999999999875 36899999999764
No 7
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=97.55 E-value=2.8e-05 Score=69.62 Aligned_cols=30 Identities=27% Similarity=0.287 Sum_probs=25.5
Q ss_pred CcccCCCceeEEEcCCCCCCCCCCcEEEeccCCcccc
Q 040100 1 MAFAPDGLIEGFYDPEAYNPREGKFLVGLQFHSERMR 37 (177)
Q Consensus 1 ~A~A~DGvIEAIE~~d~ynP~e~~FilGVQWHPE~M~ 37 (177)
+|+++||.|+||+.++ .+++|||||||...
T Consensus 157 ~A~s~~~~i~ai~~~~-------~~i~gvQFHPE~~~ 186 (525)
T 1gpm_A 157 VASTESCPFAIMANEE-------KRFYGVQFHPEVTH 186 (525)
T ss_dssp EEECSSCSCSEEEETT-------TTEEEESBCTTSTT
T ss_pred EEECCCCCEEEEEECC-------CCEEEEecCCCCCc
Confidence 3778999999999876 36899999999765
No 8
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=97.50 E-value=2.9e-05 Score=61.85 Aligned_cols=28 Identities=14% Similarity=-0.091 Sum_probs=23.3
Q ss_pred CcccCCCceeEEEcCCCCCCCCCCcEEEeccCCccc
Q 040100 1 MAFAPDGLIEGFYDPEAYNPREGKFLVGLQFHSERM 36 (177)
Q Consensus 1 ~A~A~DGvIEAIE~~d~ynP~e~~FilGVQWHPE~M 36 (177)
+|+++||.++||+..+ +++|||||||+.
T Consensus 156 la~s~~~~~~a~~~~~--------~v~gvQfHPE~~ 183 (236)
T 3l7n_A 156 LAISQGCPRQIIKFGP--------KQYAFQCHLEFT 183 (236)
T ss_dssp EEECSSCSCSEEEEET--------TEEEESSBSSCC
T ss_pred EEECCCCCEEEEEECC--------CEEEEEeCCCCC
Confidence 3678899999998653 699999999974
No 9
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=97.48 E-value=2.5e-05 Score=71.90 Aligned_cols=38 Identities=26% Similarity=0.314 Sum_probs=29.7
Q ss_pred CCcEEEeccCCcccccCCCCCCCCCChHHHHHHHHHHh
Q 040100 23 GKFLVGLQFHSERMRLSSSEEFDYPGCPIAVIAYQKRM 60 (177)
Q Consensus 23 ~~FilGVQWHPE~M~~~~~~~fDy~g~~~Av~ayqkk~ 60 (177)
++|++|||||||+.........-|.+|..||..|+++.
T Consensus 506 ~p~flGVQFHPE~~~~p~~g~~LF~~Fv~aa~~~~~~~ 543 (545)
T 1s1m_A 506 HPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQ 543 (545)
T ss_dssp SSSEEEESSCGGGTCCTTTCCHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHhhh
Confidence 57899999999987764433455889999999988653
No 10
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=97.43 E-value=4.9e-05 Score=62.54 Aligned_cols=28 Identities=14% Similarity=0.194 Sum_probs=23.6
Q ss_pred CcccCCCceeEEEcCCCCCCCCCCcEEEeccCCccc
Q 040100 1 MAFAPDGLIEGFYDPEAYNPREGKFLVGLQFHSERM 36 (177)
Q Consensus 1 ~A~A~DGvIEAIE~~d~ynP~e~~FilGVQWHPE~M 36 (177)
+|.++||.|+||+..+ .++|||||||..
T Consensus 153 lA~s~~~~~~a~~~~~--------~~~GvQfHPE~~ 180 (250)
T 3m3p_A 153 ILRSEHCANQAYVLDD--------LHIGFQCHIEMQ 180 (250)
T ss_dssp EEEETTEEEEEEEETT--------TEEEESSCTTCC
T ss_pred EEEeCCCCEEEEEECC--------eeEEEEeCCcCC
Confidence 3778999999999765 289999999964
No 11
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=97.23 E-value=4.7e-05 Score=70.22 Aligned_cols=37 Identities=32% Similarity=0.407 Sum_probs=27.7
Q ss_pred CCcEEEeccCCcccccCCCCCCCCCChHHHHHHHHHH
Q 040100 23 GKFLVGLQFHSERMRLSSSEEFDYPGCPIAVIAYQKR 59 (177)
Q Consensus 23 ~~FilGVQWHPE~M~~~~~~~fDy~g~~~Av~ayqkk 59 (177)
++|++|||||||..........-|.+|..|+..|++|
T Consensus 513 ~p~fvGVQFHPE~~~~p~~g~~LF~~Fv~aa~~~~~~ 549 (550)
T 1vco_A 513 HPFFLGLQSHPEFKSRPMRPSPPFVGFVEAALAYQER 549 (550)
T ss_dssp SSSEEEESSCGGGGCBTTBCCHHHHHHHHHHHHHTC-
T ss_pred CCEEEEEEeCCccCCCCCChHHHHHHHHHHHHhhccc
Confidence 4788899999998776443344588899999887654
No 12
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=97.19 E-value=0.00016 Score=64.90 Aligned_cols=30 Identities=27% Similarity=0.424 Sum_probs=24.6
Q ss_pred CcccCCCceeEEEcCCCCCCCCCCcEEEeccCCcccc
Q 040100 1 MAFAPDGLIEGFYDPEAYNPREGKFLVGLQFHSERMR 37 (177)
Q Consensus 1 ~A~A~DGvIEAIE~~d~ynP~e~~FilGVQWHPE~M~ 37 (177)
+|+++|+.|+||++.+ ++ ++|||||||...
T Consensus 160 ~A~s~~~~i~ai~~~~------~~-~~GvQFHPE~~~ 189 (527)
T 3tqi_A 160 TACTDNSPLAAMADFK------RR-FFGLQFHPEVTH 189 (527)
T ss_dssp EEEETTEEEEEEECSS------SC-EEEESBCSSSTT
T ss_pred EEEeCCCcEEEEEcCC------CC-EEEEEecccccc
Confidence 3678899999999876 44 689999999764
No 13
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=97.07 E-value=0.00023 Score=64.57 Aligned_cols=31 Identities=26% Similarity=0.441 Sum_probs=25.3
Q ss_pred CcccCCCceeEEEcCCCCCCCCCCcEEEeccCCccccc
Q 040100 1 MAFAPDGLIEGFYDPEAYNPREGKFLVGLQFHSERMRL 38 (177)
Q Consensus 1 ~A~A~DGvIEAIE~~d~ynP~e~~FilGVQWHPE~M~~ 38 (177)
+|.++||.|+||+.++ ++ ++|||||||....
T Consensus 185 lA~s~~~~i~ai~~~~------~~-i~GvQFHPE~~~~ 215 (556)
T 3uow_A 185 VSSSENCLICSIYNKE------YN-IYGVQYHPEVYES 215 (556)
T ss_dssp EEEETTEEEEEEEETT------TT-EEEESSCTTSTTS
T ss_pred EEEeCCCCEEEEEECC------CC-EEEEEcCCCCCcc
Confidence 3678999999999876 44 6899999997643
No 14
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=97.01 E-value=0.00012 Score=66.19 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=20.4
Q ss_pred cccC---CCceeEEEcCCCCCCCCCCcEEEeccCCccc
Q 040100 2 AFAP---DGLIEGFYDPEAYNPREGKFLVGLQFHSERM 36 (177)
Q Consensus 2 A~A~---DGvIEAIE~~d~ynP~e~~FilGVQWHPE~M 36 (177)
|+++ ||+|+||+. + +++|||||||..
T Consensus 172 A~s~~~~D~~i~ai~~-~--------~i~GvQFHPE~s 200 (555)
T 1jvn_A 172 AKAKYGSEEFIAAVNK-N--------NIFATQFHPEKS 200 (555)
T ss_dssp EEEEETTEEEEEEEEE-T--------TEEEESSBGGGS
T ss_pred EEEcCCCCCeEEEEEe-C--------CEEEEEeCcEec
Confidence 4455 689999992 2 599999999964
No 15
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=96.81 E-value=0.00055 Score=64.17 Aligned_cols=28 Identities=32% Similarity=0.408 Sum_probs=22.6
Q ss_pred cccCCCceeEEEcCCCCCCCCCCcEEEeccCCcccc
Q 040100 2 AFAPDGLIEGFYDPEAYNPREGKFLVGLQFHSERMR 37 (177)
Q Consensus 2 A~A~DGvIEAIE~~d~ynP~e~~FilGVQWHPE~M~ 37 (177)
|++ ||.|+||++++ ..++|||||||...
T Consensus 172 A~s-~~~i~ai~~~~-------~~i~GvQFHPE~~~ 199 (697)
T 2vxo_A 172 ARS-GNIVAGIANES-------KKLYGAQFHPEVGL 199 (697)
T ss_dssp EEE-TTEEEEEEETT-------TTEEEESSCTTSSS
T ss_pred EEe-CCceEEEEeCC-------CCEEEEEecccCCC
Confidence 555 56999999876 45899999999764
No 16
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=96.51 E-value=0.00086 Score=51.08 Aligned_cols=16 Identities=31% Similarity=0.275 Sum_probs=13.2
Q ss_pred CCcEEEeccCCccccc
Q 040100 23 GKFLVGLQFHSERMRL 38 (177)
Q Consensus 23 ~~FilGVQWHPE~M~~ 38 (177)
+.+++|||||||.+..
T Consensus 177 ~~~~~gvQfHPE~~~~ 192 (213)
T 3d54_D 177 SGNVFGLMPHPERAVE 192 (213)
T ss_dssp SSCEEEECSCSTTTTS
T ss_pred CCCEEEEeCCHHHhcC
Confidence 4579999999997654
No 17
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=96.33 E-value=0.00083 Score=52.70 Aligned_cols=30 Identities=17% Similarity=-0.019 Sum_probs=20.2
Q ss_pred CcEEEeccCCcccccCCCCCCCCCChHHHHHHHH
Q 040100 24 KFLVGLQFHSERMRLSSSEEFDYPGCPIAVIAYQ 57 (177)
Q Consensus 24 ~FilGVQWHPE~M~~~~~~~fDy~g~~~Av~ayq 57 (177)
++++|||||||++.. ..-+..|..+|..|+
T Consensus 184 ~~i~GvQfHPE~~~~----~~l~~~fl~~~~~~~ 213 (219)
T 1q7r_A 184 GQFLGCSFHPELTDD----HRLMQYFLNMVKEAK 213 (219)
T ss_dssp TTEEEESSCGGGSSC----CHHHHHHHHHHHHHH
T ss_pred CCEEEEEECcccCCC----HHHHHHHHHHHHHhh
Confidence 468999999997531 222455667777664
No 18
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=96.29 E-value=0.0011 Score=58.20 Aligned_cols=35 Identities=14% Similarity=-0.022 Sum_probs=24.4
Q ss_pred CcEEEeccCCcccccCCCCCCCCCChHHHHHHHHH
Q 040100 24 KFLVGLQFHSERMRLSSSEEFDYPGCPIAVIAYQK 58 (177)
Q Consensus 24 ~FilGVQWHPE~M~~~~~~~fDy~g~~~Av~ayqk 58 (177)
..++|||||||..........-|..|..+|..|+.
T Consensus 344 ~pi~gVQFHPE~~~~p~d~~~Lf~~Fl~~~~~~~~ 378 (379)
T 1a9x_B 344 KPAFSFQGNPEASPGPHDAAPLFDHFIELIEQYRK 378 (379)
T ss_dssp SSEEEESSCTTCSSSCSTTTHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCcCCCCcccHHHHHHHHHHHHHHhhc
Confidence 36899999999875432223447788888877653
No 19
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=96.25 E-value=0.00076 Score=53.08 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=21.6
Q ss_pred CcEEEeccCCcccccCCCCCCCCCChHHHHHHHHH
Q 040100 24 KFLVGLQFHSERMRLSSSEEFDYPGCPIAVIAYQK 58 (177)
Q Consensus 24 ~FilGVQWHPE~M~~~~~~~fDy~g~~~Av~ayqk 58 (177)
.+++|||||||...... ...-+..|.++|+.|+.
T Consensus 171 ~~i~gvQfHPE~~~~~~-g~~l~~~F~~~~~~~~~ 204 (212)
T 2a9v_A 171 RPIYATQFHPEVEHTQY-GRDIFRNFIGICASYRE 204 (212)
T ss_dssp SSEEEESSCTTSTTSTT-HHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCCcc-HHHHHHHHHHHHHHhhh
Confidence 46999999999864211 12235666777766643
No 20
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=95.49 E-value=0.0032 Score=49.25 Aligned_cols=31 Identities=19% Similarity=0.056 Sum_probs=18.9
Q ss_pred CcEEEeccCCcccccCCCCCCCCCChHHHHHHHHH
Q 040100 24 KFLVGLQFHSERMRLSSSEEFDYPGCPIAVIAYQK 58 (177)
Q Consensus 24 ~FilGVQWHPE~M~~~~~~~fDy~g~~~Av~ayqk 58 (177)
.+++|+|||||++.. .--+..|..+|+.+.+
T Consensus 188 ~~v~gvQfHPE~~~~----~~l~~~Fl~~~~~~~~ 218 (227)
T 2abw_A 188 NNCLGTVFHPELLPH----TAFQQYFYEKVKNYKY 218 (227)
T ss_dssp TTEEEESSCGGGSSC----CHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCeeCCC----cHHHHHHHHHHHhhhc
Confidence 368999999997632 1223445566654443
No 21
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=94.76 E-value=0.011 Score=47.08 Aligned_cols=14 Identities=50% Similarity=0.482 Sum_probs=11.6
Q ss_pred CcEEEeccCCcccc
Q 040100 24 KFLVGLQFHSERMR 37 (177)
Q Consensus 24 ~FilGVQWHPE~M~ 37 (177)
.+++|||||||...
T Consensus 181 ~~i~gvQfHPE~~~ 194 (218)
T 2vpi_A 181 KKLYGAQFHPEVGL 194 (218)
T ss_dssp TTEEEESSCTTSTT
T ss_pred CCEEEEEcCCCCCC
Confidence 46899999999754
No 22
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=87.75 E-value=0.18 Score=46.88 Aligned_cols=13 Identities=31% Similarity=0.554 Sum_probs=10.5
Q ss_pred cEEEeccCCcccc
Q 040100 25 FLVGLQFHSERMR 37 (177)
Q Consensus 25 FilGVQWHPE~M~ 37 (177)
.++|||||||...
T Consensus 606 ~~~GVQFHPE~~~ 618 (645)
T 3r75_A 606 TFSSMQFHAESVL 618 (645)
T ss_dssp TEEEESSBTTSTT
T ss_pred CEEEEEeCCeecC
Confidence 3589999999654
No 23
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=82.34 E-value=0.87 Score=39.18 Aligned_cols=29 Identities=14% Similarity=-0.074 Sum_probs=20.9
Q ss_pred cccCCCceeEEEcCCCCCCCCCCcEEEeccCCcccc
Q 040100 2 AFAPDGLIEGFYDPEAYNPREGKFLVGLQFHSERMR 37 (177)
Q Consensus 2 A~A~DGvIEAIE~~d~ynP~e~~FilGVQWHPE~M~ 37 (177)
|.++.-=+.+|..++ + -++|||+|||+-.
T Consensus 223 A~S~~~~~q~~~~~~------~-~~~~vQgHPEyd~ 251 (312)
T 2h2w_A 223 AESDEAGVYVVANKS------E-RQIFVTGHPEYDR 251 (312)
T ss_dssp EEETTTEEEEEECSS------S-SEEEECSCTTCCT
T ss_pred EcCCCCcceEEEecC------C-CEEEEECCCCCCH
Confidence 445555677887755 3 4899999999644
No 24
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=82.01 E-value=0.7 Score=39.38 Aligned_cols=29 Identities=24% Similarity=-0.008 Sum_probs=20.7
Q ss_pred cccCCCceeEEEcCCCCCCCCCCcEEEeccCCcccc
Q 040100 2 AFAPDGLIEGFYDPEAYNPREGKFLVGLQFHSERMR 37 (177)
Q Consensus 2 A~A~DGvIEAIE~~d~ynP~e~~FilGVQWHPE~M~ 37 (177)
|.+++-=+.+|...+ + -++|||+|||+-.
T Consensus 212 A~S~~~~~~~~~~~~------~-~~~~vQgHpEyd~ 240 (301)
T 2vdj_A 212 ANSEEAGVHLVIGQE------G-RQVFALGHSEYSC 240 (301)
T ss_dssp EEETTTEEEEEEEGG------G-TEEEECSCTTCCT
T ss_pred EeCCCCcceEEEecC------C-CEEEEECCCCCCH
Confidence 445555677887755 3 4899999999644
No 25
>2jli_A YSCU, YOP proteins translocation protein; cell membrane, transmembrane, protein transport, type III secretion system, plasmid, membrane; 1.13A {Yersinia pestis}
Probab=24.18 E-value=63 Score=24.56 Aligned_cols=73 Identities=15% Similarity=0.227 Sum_probs=46.1
Q ss_pred CCCCCCcEEEeccCCcccccCCCCCCCCCChHH---HHHHHHHHhhhcCCCCCCCcchhhhhhcceeeecccccchhhcc
Q 040100 19 NPREGKFLVGLQFHSERMRLSSSEEFDYPGCPI---AVIAYQKRMNRASYVPNFIPLKQKIGKSKVLVKSFSPAKDINIS 95 (177)
Q Consensus 19 nP~e~~FilGVQWHPE~M~~~~~~~fDy~g~~~---Av~ayqkk~~~~~~~~~~~~l~~~mekrk~ivrsfslAk~~y~~ 95 (177)
|| .+|.+|+.|+|+.+.. ...--.|.+. .++++.++-. =-|+..=.||+.||..
T Consensus 44 NP--th~AVAL~Yd~~~~~A---P~VvAKG~~~~A~~I~~~A~e~~------------------VPi~e~~~LAr~Ly~~ 100 (123)
T 2jli_A 44 NP--THIAIGILYKRGETPL---PLVTFKYTDAQVQTVRKIAEEEG------------------VPILQRIPLARALYWD 100 (123)
T ss_dssp CC--CSEEEEEECCTTTCSS---CEEEEEEETHHHHHHHHHHHHHT------------------CCEEECHHHHHHHHHH
T ss_pred CC--CceEEEEEECCCCCCC---CEEEEEeCCHHHHHHHHHHHHcC------------------CCEEeCHHHHHHHHHh
Confidence 56 3699999999985432 1222333333 4444444332 2377888899999955
Q ss_pred CCCCCCCchhhhHhhhhhh
Q 040100 96 GQTAHPSEESELQAVAEFL 114 (177)
Q Consensus 96 ~~~~~~~~~~el~~gaefl 114 (177)
-.....-.+.-+++.||.|
T Consensus 101 ~~ig~~IP~ely~aVAeiL 119 (123)
T 2jli_A 101 ALVDHYIPAEQIEATAEVL 119 (123)
T ss_dssp CCTTSBCCGGGHHHHHHHH
T ss_pred CCCCCccCHHHHHHHHHHH
Confidence 5444555667788888887
No 26
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=22.91 E-value=64 Score=23.52 Aligned_cols=71 Identities=17% Similarity=0.223 Sum_probs=45.3
Q ss_pred CcEEEeccCCcccccCCCCCCCCCChHH---HHHHHHHHhhhcCCCCCCCcchhhhhhcceeeecccccchhhccCCCCC
Q 040100 24 KFLVGLQFHSERMRLSSSEEFDYPGCPI---AVIAYQKRMNRASYVPNFIPLKQKIGKSKVLVKSFSPAKDINISGQTAH 100 (177)
Q Consensus 24 ~FilGVQWHPE~M~~~~~~~fDy~g~~~---Av~ayqkk~~~~~~~~~~~~l~~~mekrk~ivrsfslAk~~y~~~~~~~ 100 (177)
+|.+|+.|+|+.+.. ...--.|-+. ..+++.++-. =-|++.=.||+.||..-....
T Consensus 18 h~AVAL~Yd~~~~~a---P~VvAKG~~~~A~~I~~~A~e~g------------------VPi~e~~~LAr~L~~~~~ig~ 76 (97)
T 3t7y_A 18 DIAVAIGYMPEKYKA---PWIIAMGVNLRAKRIIAEAEKYG------------------VPIMRNVPLAHQLLDEGKELK 76 (97)
T ss_dssp TEEEEEECCTTTCSS---CEEEEEEEHHHHHHHHHHHHHHT------------------CCEEECHHHHHHHHHHCCBTS
T ss_pred cEEEEEEecCCCCCC---CEEEEEeCcHHHHHHHHHHHHcC------------------CeEEECHHHHHHHHHcCCCCC
Confidence 699999999985432 2223344444 3344333322 237788889999995555444
Q ss_pred CCchhhhHhhhhhhh
Q 040100 101 PSEESELQAVAEFLE 115 (177)
Q Consensus 101 ~~~~~el~~gaefle 115 (177)
.-.+.-.++.||.|-
T Consensus 77 ~IP~ely~aVAeiLa 91 (97)
T 3t7y_A 77 FIPETTYEAVGEILL 91 (97)
T ss_dssp BCCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH
Confidence 556777889998873
No 27
>2jlj_A YSCU, YOP proteins translocation protein U; cell membrane, transmembrane, yersinia pesits, protein trans type III secretion system, membrane; 1.3A {Yersinia pestis} PDB: 2jlh_A* 2v5g_A 2w0r_A
Probab=21.54 E-value=59 Score=25.33 Aligned_cols=71 Identities=13% Similarity=0.185 Sum_probs=46.0
Q ss_pred CcEEEeccCCcccccCCCCCCCCCChHH---HHHHHHHHhhhcCCCCCCCcchhhhhhcceeeecccccchhhccCCCCC
Q 040100 24 KFLVGLQFHSERMRLSSSEEFDYPGCPI---AVIAYQKRMNRASYVPNFIPLKQKIGKSKVLVKSFSPAKDINISGQTAH 100 (177)
Q Consensus 24 ~FilGVQWHPE~M~~~~~~~fDy~g~~~---Av~ayqkk~~~~~~~~~~~~l~~~mekrk~ivrsfslAk~~y~~~~~~~ 100 (177)
+|.+|+.|+|+.+.. ...--.|.+. .++++.++-.- -|+..=.||+.||..-....
T Consensus 56 h~AVAL~Yd~~~~~A---P~VvAKG~g~~A~~I~e~A~e~gV------------------Pi~e~~~LAr~Ly~~~~ig~ 114 (144)
T 2jlj_A 56 HIAIGILYKRGETPL---PLVTFKYTDAQVQTVRKIAEEEGV------------------PILQRIPLARALYWDALVDH 114 (144)
T ss_dssp TEEEEEECCTTTCSS---CEEEEEEETHHHHHHHHHHHHHTC------------------CEEECHHHHHHHHHHCCTTS
T ss_pred cEEEEEEeCCCCCCC---CEEEEEeCCHHHHHHHHHHHHcCC------------------CEEeCHHHHHHHHHhCCCCC
Confidence 699999999985432 1222333333 44444443332 37788899999995554445
Q ss_pred CCchhhhHhhhhhhh
Q 040100 101 PSEESELQAVAEFLE 115 (177)
Q Consensus 101 ~~~~~el~~gaefle 115 (177)
.-.+.-+++.||.|-
T Consensus 115 ~IP~ely~aVAeiLa 129 (144)
T 2jlj_A 115 YIPAEQIEATAEVLR 129 (144)
T ss_dssp BCCGGGHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH
Confidence 556778899999984
No 28
>3bzs_A ESCU; auto cleavage protein, intein, T3SS, TTSS, asparagine cycliz membrane, membrane protein, protein transport; 1.48A {Escherichia coli} PDB: 3bzr_A 3bzp_A 3bzt_A 3c03_A
Probab=21.50 E-value=61 Score=25.04 Aligned_cols=74 Identities=12% Similarity=0.164 Sum_probs=46.9
Q ss_pred CCCCCCcEEEeccCCcccccCCCCCCCCCChHH---HHHHHHHHhhhcCCCCCCCcchhhhhhcceeeecccccchhhcc
Q 040100 19 NPREGKFLVGLQFHSERMRLSSSEEFDYPGCPI---AVIAYQKRMNRASYVPNFIPLKQKIGKSKVLVKSFSPAKDINIS 95 (177)
Q Consensus 19 nP~e~~FilGVQWHPE~M~~~~~~~fDy~g~~~---Av~ayqkk~~~~~~~~~~~~l~~~mekrk~ivrsfslAk~~y~~ 95 (177)
|| .+|.+|+.|+|+.+.. ...--.|.+. .++++.++-.- -|+..=.||+.||..
T Consensus 54 NP--th~AVAL~Yd~~~~~A---P~VvAKG~g~~A~~I~e~A~e~gV------------------Pi~e~~~LAr~Ly~~ 110 (137)
T 3bzs_A 54 DP--THIAICLYYKLGETPL---PLVIETGKDAKALQIIKLAELYDI------------------PVIEDIPLARSLYKN 110 (137)
T ss_dssp ET--TTEEEEEECCTTTCSS---CEEEEEEETHHHHHHHHHHHHHTC------------------CEEECHHHHHHHHHH
T ss_pred CC--CcEEEEEEeCCCCCCC---CEEEEEeCCHHHHHHHHHHHHcCC------------------CEEeCHHHHHHHHHh
Confidence 45 3699999999985432 1222333333 44444443332 377888899999955
Q ss_pred CCCCCCCchhhhHhhhhhhh
Q 040100 96 GQTAHPSEESELQAVAEFLE 115 (177)
Q Consensus 96 ~~~~~~~~~~el~~gaefle 115 (177)
-.....-.+.-+++.||.|-
T Consensus 111 ~~ig~~IP~ely~aVAeiLa 130 (137)
T 3bzs_A 111 IHKGQYITEDFFEPVAQLIR 130 (137)
T ss_dssp SCTTCBCCGGGHHHHHHHHH
T ss_pred CCCCCccCHHHHHHHHHHHH
Confidence 54445556677899999883
Done!