BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040101
(101 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94AU2|SEC22_ARATH 25.3 kDa vesicle transport protein OS=Arabidopsis thaliana GN=SEC22
PE=2 SV=1
Length = 218
Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 96/101 (95%), Positives = 99/101 (98%)
Query: 1 TFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSE 60
TFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSE
Sbjct: 118 TFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSE 177
Query: 61 SRIYADKAKDLNRQALIRKWAPVAIVLGVVFVVFWLKTKLW 101
SRIYADKAKDLNRQALIRKWAPVAIV GVVF++FW+K KLW
Sbjct: 178 SRIYADKAKDLNRQALIRKWAPVAIVFGVVFLLFWVKNKLW 218
>sp|Q6C880|SEC22_YARLI Protein transport protein SEC22 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=SEC22 PE=3 SV=1
Length = 213
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 71/97 (73%), Gaps = 1/97 (1%)
Query: 1 TFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSE 60
TF+QKTK++YQDTR N+ KLN EL +V ++MT+N++++L G LD +S++SS L +E
Sbjct: 115 TFMQKTKRVYQDTRATHNLDKLNTELQDVTRVMTKNIEDLLHRGHSLDHMSDLSSNLRTE 174
Query: 61 SRIYADKAKDLNRQALIRKWAP-VAIVLGVVFVVFWL 96
S+ Y A+ +N +A+IR++ P + + L +F+++W+
Sbjct: 175 SKKYRRAAQRINWEAMIRQYIPFIGVGLIGLFMLWWM 211
>sp|Q74ZD2|SEC22_ASHGO Protein transport protein SEC22 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SEC22
PE=3 SV=2
Length = 214
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 1 TFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSE 60
F+QKTKK+Y D R Q N+ +LN +L V QIMT+N++++L G+ LD++S++S+ L +
Sbjct: 115 NFLQKTKKIYNDKRVQGNLDQLNSDLLGVKQIMTKNIEDLLYRGDSLDRMSDLSASLRQD 174
Query: 61 SRIYADKAKDLNRQALIRKWAPVAIV-LGVVFVVFWL 96
S+ Y A+ +N L+ ++APVA++ L +F+V+WL
Sbjct: 175 SKKYRRSAQKINFDLLLSQYAPVALIGLFFLFLVWWL 211
>sp|Q6CJA0|SEC22_KLULA Protein transport protein SEC22 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=SEC22 PE=3 SV=1
Length = 214
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 68/97 (70%), Gaps = 1/97 (1%)
Query: 1 TFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSE 60
F+QKTKK+Y D R Q N+ +LN +L V QIMT+N++++L G+ LD++S+MS+ L +
Sbjct: 115 NFLQKTKKVYNDKRVQGNMDQLNQDLKGVKQIMTKNIEDLLYRGDSLDKMSDMSASLRQD 174
Query: 61 SRIYADKAKDLNRQALIRKWAPVAIV-LGVVFVVFWL 96
++ Y A+ +N LI ++AP+AI+ VF+++W+
Sbjct: 175 AKKYRASAQKINFDLLISQYAPIAIIAFFFVFLLWWM 211
>sp|P22214|SEC22_YEAST Protein transport protein SEC22 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SEC22 PE=1 SV=1
Length = 214
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 60/95 (63%)
Query: 1 TFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSE 60
F+Q TKK Y D + Q N+ +LN EL V QIM++N++++L G+ LD++S+MSS L
Sbjct: 115 NFLQMTKKSYSDKKVQDNLDQLNQELVGVKQIMSKNIEDLLYRGDSLDKMSDMSSSLKET 174
Query: 61 SRIYADKAKDLNRQALIRKWAPVAIVLGVVFVVFW 95
S+ Y A+ +N LI ++AP+ IV +FW
Sbjct: 175 SKRYRKSAQKINFDLLISQYAPIVIVAFFFVFLFW 209
>sp|O08595|SC22B_CRIGR Vesicle-trafficking protein SEC22b OS=Cricetulus griseus GN=Sec22b
PE=1 SV=3
Length = 215
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 63/97 (64%), Gaps = 2/97 (2%)
Query: 1 TFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSE 60
TFIQKTKKLY D+R +RN+ +N EL +V +IM N++EVL GE L + ++ L+S
Sbjct: 117 TFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSL 176
Query: 61 SRIYADKAKDLNRQALIRKWAPVAI--VLGVVFVVFW 95
S+ Y AK LN ++ K A VA+ ++ +V+V FW
Sbjct: 177 SKKYRQDAKYLNMRSTYAKLAAVAVFFIMLIVYVRFW 213
>sp|Q4KM74|SC22B_RAT Vesicle-trafficking protein SEC22b OS=Rattus norvegicus GN=Sec22b
PE=1 SV=3
Length = 215
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 63/97 (64%), Gaps = 2/97 (2%)
Query: 1 TFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSE 60
TFIQKTKKLY D+R +RN+ +N EL +V +IM N++EVL GE L + ++ L+S
Sbjct: 117 TFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSL 176
Query: 61 SRIYADKAKDLNRQALIRKWAPVAI--VLGVVFVVFW 95
S+ Y AK LN ++ K A VA+ ++ +V+V FW
Sbjct: 177 SKKYRQDAKYLNMRSTYAKLAAVAVFFIMLIVYVRFW 213
>sp|Q5RAI9|SC22B_PONAB Vesicle-trafficking protein SEC22b OS=Pongo abelii GN=SEC22B PE=2
SV=3
Length = 215
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 63/97 (64%), Gaps = 2/97 (2%)
Query: 1 TFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSE 60
TFIQKTKKLY D+R +RN+ +N EL +V +IM N++EVL GE L + ++ L+S
Sbjct: 117 TFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSL 176
Query: 61 SRIYADKAKDLNRQALIRKWAPVAI--VLGVVFVVFW 95
S+ Y AK LN ++ K A VA+ ++ +V+V FW
Sbjct: 177 SKKYRQDAKYLNMRSTYAKLAAVAVFFIMLIVYVRFW 213
>sp|O08547|SC22B_MOUSE Vesicle-trafficking protein SEC22b OS=Mus musculus GN=Sec22b PE=1
SV=3
Length = 215
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 63/97 (64%), Gaps = 2/97 (2%)
Query: 1 TFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSE 60
TFIQKTKKLY D+R +RN+ +N EL +V +IM N++EVL GE L + ++ L+S
Sbjct: 117 TFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSL 176
Query: 61 SRIYADKAKDLNRQALIRKWAPVAI--VLGVVFVVFW 95
S+ Y AK LN ++ K A VA+ ++ +V+V FW
Sbjct: 177 SKKYRQDAKYLNMRSTYAKLAAVAVFFIMLIVYVRFW 213
>sp|Q5ZJW4|SC22B_CHICK Vesicle-trafficking protein SEC22b OS=Gallus gallus GN=SEC22B PE=2
SV=1
Length = 215
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 63/97 (64%), Gaps = 2/97 (2%)
Query: 1 TFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSE 60
T+IQKTKKLY D+R +RN+ +N EL +V +IM N++EVL GE L + ++ L+S
Sbjct: 117 TYIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSL 176
Query: 61 SRIYADKAKDLNRQALIRKWAPVAI--VLGVVFVVFW 95
S+ Y AK LN ++ K A VA+ ++ +V+V FW
Sbjct: 177 SKKYRQDAKYLNMRSTYAKLAAVAVFFIMLIVYVRFW 213
>sp|O75396|SC22B_HUMAN Vesicle-trafficking protein SEC22b OS=Homo sapiens GN=SEC22B PE=1
SV=4
Length = 215
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
Query: 1 TFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSE 60
TFIQKTKKLY D+ +RN+ +N EL +V +IM N++EVL GE L + ++ L+S
Sbjct: 117 TFIQKTKKLYIDSCARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSL 176
Query: 61 SRIYADKAKDLNRQALIRKWAPVAI--VLGVVFVVFW 95
S+ Y AK LN + K A VA+ ++ +V+V FW
Sbjct: 177 SKKYRQDAKYLNMHSTYAKLAAVAVFFIMLIVYVRFW 213
>sp|Q9Y7L0|SEC22_SCHPO Protein transport protein sec22 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sec22 PE=3 SV=2
Length = 215
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 66/94 (70%), Gaps = 1/94 (1%)
Query: 1 TFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSE 60
TF+QK+K++Y R N+ KLN EL +V ++MT+N++++L G+ L++++++SS L
Sbjct: 116 TFMQKSKRVYNTPRANDNLDKLNTELKDVTRVMTKNIEDLLYRGDSLEKMADLSSDLRYS 175
Query: 61 SRIYADKAKDLNRQALIRKWAPVAIVLGVVFVVF 94
S Y A+ +N +AL R++ PV+I+ ++F++F
Sbjct: 176 SAKYKKAARRVNLEALWRQYGPVSII-ALLFLIF 208
>sp|Q7SXP0|S22BB_DANRE Vesicle-trafficking protein SEC22b-B OS=Danio rerio GN=sec22bb PE=2
SV=1
Length = 215
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
Query: 1 TFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSE 60
T+IQKTKK Y D+R +RN++ +N EL +V +IM N++EVL GE L + +S L+S
Sbjct: 117 TYIQKTKKSYIDSRARRNLSNINTELQDVQRIMVANIEEVLQRGEALSALDSKASNLSSL 176
Query: 61 SRIYADKAKDLNRQALIRKWAP--VAIVLGVVFVVFW 95
S+ Y AK LN ++ K A V ++ +V++ FW
Sbjct: 177 SKKYRSDAKYLNTRSTYAKLAAGGVFFIMLIVYIRFW 213
>sp|Q6P7L4|SC22B_XENTR Vesicle-trafficking protein SEC22b OS=Xenopus tropicalis GN=sec22b
PE=2 SV=1
Length = 215
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
Query: 2 FIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSES 61
+IQKTKK Y D+R +RN++ +N EL +V +IM N++EVL GE L + +S L++ S
Sbjct: 118 YIQKTKKSYIDSRARRNLSSVNTELQDVQRIMVANIEEVLLRGEALSALDSKASNLSTLS 177
Query: 62 RIYADKAKDLNRQALIRKWAPVAI--VLGVVFVVFW 95
+ Y AK LN ++ K A VA+ V+ +V++ FW
Sbjct: 178 KKYRQDAKYLNMRSTYAKLAAVAVFSVMLIVYIRFW 213
>sp|Q7ZV15|S22BA_DANRE Vesicle-trafficking protein SEC22b-A OS=Danio rerio GN=sec22ba PE=2
SV=1
Length = 215
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
Query: 1 TFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSE 60
T+IQKT K Y D+R +RN+ +N EL++V +IM N++EVL GE L + +S L+S
Sbjct: 117 TYIQKTIKSYIDSRARRNLGNINSELHDVQRIMVANIEEVLQRGEALSALDSKASNLSSL 176
Query: 61 SRIYADKAKDLNRQALIRKWAPVAIVL--GVVFVVFW 95
S+ Y AK LN ++ K A A+++ +++V FW
Sbjct: 177 SKKYRSDAKYLNTRSTYAKVAAGAVIIITLIIYVRFW 213
>sp|Q6FWT0|SEC22_CANGA Protein transport protein SEC22 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=SEC22 PE=3 SV=1
Length = 215
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 58/86 (67%)
Query: 1 TFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSE 60
TF+Q+TKK Y D + Q N+ +LN EL V QIM++N++++L G+ L+++ +MS+ L
Sbjct: 116 TFLQRTKKAYSDKKVQDNLDQLNQELVGVKQIMSKNIEDLLYRGDSLEKMDDMSNSLKIS 175
Query: 61 SRIYADKAKDLNRQALIRKWAPVAIV 86
S+ Y A+ +N LI ++AP+ +V
Sbjct: 176 SKKYRKSAQKINFDLLISQYAPIVMV 201
>sp|O60073|YKT6_SCHPO Synaptobrevin homolog ykt6 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=ykt6 PE=3 SV=1
Length = 197
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 10 YQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAK 69
YQD + I ++ EL E ++ + ++ VL GEKLD + + S L+++SR++ AK
Sbjct: 129 YQDPKQADTIMRVQQELDETKDVLHKTIESVLARGEKLDDLIQRSDNLSTQSRMFYKSAK 188
Query: 70 DLNRQALI 77
N +I
Sbjct: 189 KQNSCCII 196
>sp|Q6BSL0|YKT6_DEBHA Synaptobrevin homolog YKT6 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=YKT6 PE=3 SV=1
Length = 200
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 8 KLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADK 67
K YQD +I K+ EL E ++ + ++ VL GEKLD + + S L+S SR++ +
Sbjct: 130 KKYQDPSQADSIMKVQQELDETKIVLHKTIESVLQRGEKLDSLVDKSEALSSSSRMFYKQ 189
Query: 68 AKDLNRQALI 77
AK N +I
Sbjct: 190 AKKTNSCCII 199
>sp|Q757A4|YKT6_ASHGO Synaptobrevin homolog YKT6 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=YKT6 PE=3 SV=1
Length = 200
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%)
Query: 10 YQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAK 69
YQD +I ++ EL E ++ + ++ VL GEKLD + + S L++ SR++ +AK
Sbjct: 132 YQDPSQADSIMRVQQELDETKIVLHKTIESVLQRGEKLDNLVDKSESLSASSRMFYKQAK 191
Query: 70 DLNRQALI 77
N LI
Sbjct: 192 KTNSCCLI 199
>sp|Q6FW27|YKT6_CANGA Synaptobrevin homolog YKT6 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=YKT6 PE=3
SV=1
Length = 205
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 1 TFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSE 60
T+I K YQD I K+ EL E ++ + ++ VL GEKLD + + S LT+
Sbjct: 132 TYISK----YQDPAQADAIMKVQQELDETKIVLHKTIENVLQRGEKLDNLVDKSESLTAS 187
Query: 61 SRIYADKAKDLNRQALI 77
S+++ +AK N +I
Sbjct: 188 SKMFYKQAKKTNSCCII 204
>sp|P36015|YKT6_YEAST Synaptobrevin homolog YKT6 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YKT6 PE=1 SV=1
Length = 200
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 1 TFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSE 60
T+I K YQD I K+ EL E ++ + ++ VL GEKLD + + S LT+
Sbjct: 127 TYISK----YQDPSQADAIMKVQQELDETKIVLHKTIENVLQRGEKLDNLVDKSESLTAS 182
Query: 61 SRIYADKAKDLNRQALI 77
S+++ +AK N +I
Sbjct: 183 SKMFYKQAKKSNSCCII 199
>sp|Q6C537|YKT6_YARLI Synaptobrevin homolog YKT6 OS=Yarrowia lipolytica (strain CLIB 122
/ E 150) GN=YKT6 PE=3 SV=1
Length = 200
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 8 KLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADK 67
K YQD I ++ EL E ++ + ++ VL GE+LD + + S L+ S+I+ +
Sbjct: 130 KRYQDPHQADAIMRVQQELDETKIVLHKTIESVLARGERLDTLVDKSEALSQSSKIFFKQ 189
Query: 68 AKDLNRQALI 77
AK N ++
Sbjct: 190 AKKTNSCCIL 199
>sp|Q9ZRD6|YKT61_ARATH VAMP-like protein YKT61 OS=Arabidopsis thaliana GN=YKT61 PE=2 SV=1
Length = 199
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 10 YQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAK 69
+QD + K+ EL E I+ + + VL GEKLD + E SS L+ S+++ +AK
Sbjct: 131 FQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSMASQMFYKQAK 190
Query: 70 DLNRQALI 77
N I
Sbjct: 191 KTNSCCTI 198
>sp|Q6CSA2|YKT6_KLULA Synaptobrevin homolog YKT6 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=YKT6 PE=3 SV=1
Length = 200
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 10 YQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAK 69
YQD I ++ EL E + + ++ VL GEKLD + + S L++ SR++ +AK
Sbjct: 132 YQDPSQADAIMRVQQELDETKITLHKTIENVLQRGEKLDNLVDKSESLSAASRMFYKQAK 191
Query: 70 DLNRQALI 77
N ++
Sbjct: 192 KTNSCCIV 199
>sp|O70480|VAMP4_MOUSE Vesicle-associated membrane protein 4 OS=Mus musculus GN=Vamp4 PE=1
SV=1
Length = 141
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 35/56 (62%)
Query: 19 IAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQ 74
I + +++ EV +M N+ +V+ GE+LD++ + S L+ + +++++K L RQ
Sbjct: 53 IKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQ 108
>sp|O75379|VAMP4_HUMAN Vesicle-associated membrane protein 4 OS=Homo sapiens GN=VAMP4 PE=1
SV=2
Length = 141
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 35/56 (62%)
Query: 19 IAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQ 74
I + +++ EV +M N+ +V+ GE+LD++ + S L+ + +++++K L RQ
Sbjct: 53 IKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQ 108
>sp|Q32L97|VAMP4_BOVIN Vesicle-associated membrane protein 4 OS=Bos taurus GN=VAMP4 PE=2
SV=1
Length = 141
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 35/56 (62%)
Query: 19 IAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQ 74
I + +++ EV +M N+ +V+ GE+LD++ + S L+ + +++++K L RQ
Sbjct: 53 IKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQ 108
>sp|Q54ES8|YKT6_DICDI Putative synaptobrevin homolog YKT6 OS=Dictyostelium discoideum
GN=ykt6 PE=1 SV=1
Length = 202
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 35/64 (54%)
Query: 10 YQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAK 69
YQ+ T + L L E I+ + V+++ GEKLD ++ S L+ +S+ + + A+
Sbjct: 134 YQNPETADPMMNLQKNLDETITIVKKTVEQLGQRGEKLDDLAAKSDDLSFQSKAFMNNAE 193
Query: 70 DLNR 73
+N+
Sbjct: 194 RMNK 197
>sp|Q3T0Y8|VAMP8_BOVIN Vesicle-associated membrane protein 8 OS=Bos taurus GN=VAMP8 PE=2
SV=1
Length = 100
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 19 IAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQ 74
+ L DE+ V IMT+NV+ +L GE LD + + L + S + ++ + R+
Sbjct: 12 VRNLRDEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVARK 67
>sp|Q5EGY4|YKT6_RAT Synaptobrevin homolog YKT6 OS=Rattus norvegicus GN=Ykt6 PE=1 SV=1
Length = 198
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 10 YQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAK 69
YQ+ R ++K+ EL E I+ ++ +L GEKLD + S L ++S+ + A+
Sbjct: 130 YQNPREADPMSKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTAR 189
Query: 70 DLNRQALI 77
N I
Sbjct: 190 KQNSCCAI 197
>sp|Q9M376|VA727_ARATH Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana
GN=VAMP727 PE=2 SV=1
Length = 240
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 40/73 (54%)
Query: 19 IAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIR 78
++KL ++ EV IM N+++VL GEK++ + + + L ++ + + + L R+ ++
Sbjct: 150 LSKLKAQITEVKGIMMDNIEKVLDRGEKIELLVDKTENLQFQADSFQRQGRQLRRKMWLQ 209
Query: 79 KWAPVAIVLGVVF 91
+V G VF
Sbjct: 210 SLQMKLMVAGAVF 222
>sp|Q9CQW1|YKT6_MOUSE Synaptobrevin homolog YKT6 OS=Mus musculus GN=Ykt6 PE=2 SV=1
Length = 198
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 10 YQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAK 69
YQ+ R ++K+ EL E I+ ++ +L GEKLD + S L ++S+ + A+
Sbjct: 130 YQNPREADPMSKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTAR 189
Query: 70 DLNRQALI 77
N I
Sbjct: 190 KQNSCCAI 197
>sp|Q7ZUN8|YKT6_DANRE Synaptobrevin homolog YKT6 OS=Danio rerio GN=ykt6 PE=2 SV=1
Length = 198
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 10 YQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAK 69
YQ+ R + K+ EL E I+ ++ +L GEKLD + + S L ++S+ + A+
Sbjct: 130 YQNPREADAMTKVQAELDETKIILHNTMESLLERGEKLDDLVQKSEHLGNQSKAFYKTAR 189
Query: 70 DLN 72
N
Sbjct: 190 KQN 192
>sp|P65372|MMPLA_MYCTU Putative membrane protein mmpL10 OS=Mycobacterium tuberculosis
GN=mmpL10 PE=3 SV=1
Length = 1002
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Query: 11 QDTRTQRNIAKLNDELYEVHQI--------MTRNVQEVLGVGEKLDQVSEMSSRLTSESR 62
D RT R +A L V QI +TR E L Q ++ +RL SR
Sbjct: 419 HDLRTPRGLADLEQLAQRVSQIPGVAMVRGVTRPNGETLEQARATYQAGQVGNRLGGASR 478
Query: 63 IYADKAKDLNRQA 75
+ ++ DLNR A
Sbjct: 479 MIDERTGDLNRLA 491
>sp|P65373|MMPLA_MYCBO Putative membrane protein mmpL10 OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=mmpL10 PE=3 SV=1
Length = 1002
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Query: 11 QDTRTQRNIAKLNDELYEVHQI--------MTRNVQEVLGVGEKLDQVSEMSSRLTSESR 62
D RT R +A L V QI +TR E L Q ++ +RL SR
Sbjct: 419 HDLRTPRGLADLEQLAQRVSQIPGVAMVRGVTRPNGETLEQARATYQAGQVGNRLGGASR 478
Query: 63 IYADKAKDLNRQA 75
+ ++ DLNR A
Sbjct: 479 MIDERTGDLNRLA 491
>sp|O15498|YKT6_HUMAN Synaptobrevin homolog YKT6 OS=Homo sapiens GN=YKT6 PE=1 SV=1
Length = 198
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%)
Query: 10 YQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAK 69
YQ+ R + K+ EL E I+ ++ +L GEKLD + S L ++S+ + A+
Sbjct: 130 YQNPREADPMTKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTAR 189
Query: 70 DLNRQALI 77
N I
Sbjct: 190 KQNSCCAI 197
>sp|P34351|SNB5_CAEEL Synaptobrevin-like protein 5 OS=Caenorhabditis elegans GN=snb-5
PE=4 SV=1
Length = 102
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 19 IAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIR 78
I + EL V IM NVQ+++ KLD + E + RL S +Y A + R+
Sbjct: 18 IMRTRRELDSVKAIMKENVQKIMERQGKLDDLVERAQRLEEASDVYVKCAVKIKREM--- 74
Query: 79 KWAPVAIVLGVVFV 92
W ++ G++ V
Sbjct: 75 SWKANSLRYGIIAV 88
>sp|Q6P816|YKT6_XENTR Synaptobrevin homolog YKT6 OS=Xenopus tropicalis GN=ykt6 PE=2 SV=1
Length = 198
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 10 YQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAK 69
YQ+ R ++K+ EL E I+ ++ +L GEKLD + S L ++S+ + A+
Sbjct: 130 YQNPRDADPMSKVQAELDETKIILHNTMESLLQRGEKLDDLVSKSEVLGTQSKAFYKTAR 189
Query: 70 DLNRQALI 77
N I
Sbjct: 190 KQNSCCGI 197
>sp|Q6DDU7|YKT6A_XENLA Synaptobrevin homolog YKT6-A OS=Xenopus laevis GN=ykt6-a PE=2 SV=1
Length = 198
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 10 YQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAK 69
YQ+ R ++K+ EL E I+ ++ +L GEKLD + S L ++S+ + A+
Sbjct: 130 YQNPRDADPMSKVQAELDETKIILHNTMESLLQRGEKLDDLVSKSEVLGTQSKAFYKTAR 189
Query: 70 DLN 72
N
Sbjct: 190 KQN 192
>sp|O59431|RL5_PYRHO 50S ribosomal protein L5P OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl5p PE=3 SV=1
Length = 188
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 28 EVHQIMTRNVQEV---LGVGEKLDQVSE---MSSRLTSESRIYADKAKDLNRQALIRKWA 81
E H + +Q+V +GVGE +++++ M RLT + I KAK NR IR+
Sbjct: 16 EAHPMRRPRIQKVTINIGVGESGERLTKAEIMLQRLTGQKPIRR-KAKKTNRDFGIRRGE 74
Query: 82 PVAI 85
P+A+
Sbjct: 75 PIAV 78
>sp|Q32N70|YKT6B_XENLA Synaptobrevin homolog YKT6-B OS=Xenopus laevis GN=ykt6-b PE=2 SV=1
Length = 198
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 10 YQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAK 69
YQ+ R ++K+ EL E ++ ++ +L GEKLD + S L ++S+ + A+
Sbjct: 130 YQNPRDADPMSKVQAELDETKIVLHNTMESLLQRGEKLDDLVSKSEVLGTQSKAFYKTAR 189
Query: 70 DLN 72
N
Sbjct: 190 KQN 192
>sp|Q9WUF4|VAMP8_RAT Vesicle-associated membrane protein 8 OS=Rattus norvegicus
GN=Vamp8 PE=1 SV=1
Length = 100
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 19 IAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQ 74
+ L E+ V IMT+NV+ +L GE LD + + L + S + ++ + R+
Sbjct: 12 VRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVARK 67
>sp|Q17WZ1|SYE1_HELAH Glutamate--tRNA ligase 1 OS=Helicobacter acinonychis (strain
Sheeba) GN=gltX1 PE=3 SV=1
Length = 439
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 30/54 (55%)
Query: 11 QDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIY 64
+DT +RNI + E+ E+ ++M N +++ +D EM+ +L E++ +
Sbjct: 39 EDTDKERNIEGKDQEILEILKLMGMNWDKLVYQSHNIDYHREMAEKLLKENKAF 92
>sp|O48850|VA725_ARATH Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana
GN=VAMP725 PE=2 SV=2
Length = 285
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 34/56 (60%)
Query: 19 IAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQ 74
+AK+ ++ EV +M N+++VL GEK++ + + + L S+++ + + + R+
Sbjct: 196 LAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKIRRK 251
>sp|Q9V1U9|RL5_PYRAB 50S ribosomal protein L5P OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rpl5p PE=3 SV=1
Length = 188
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 27 YEVHQIMTRNVQEV---LGVGEKLDQVSE---MSSRLTSESRIYADKAKDLNRQALIRKW 80
+E H + +++V +GVGE +++++ M RLT + I KAK NR IR+
Sbjct: 15 WEAHPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRR-KAKKTNRDFGIRRG 73
Query: 81 APVAI 85
P+A+
Sbjct: 74 EPIAV 78
>sp|O70404|VAMP8_MOUSE Vesicle-associated membrane protein 8 OS=Mus musculus GN=Vamp8
PE=1 SV=1
Length = 101
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 19 IAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQ 74
+ L E+ V IMT+NV+ +L GE LD + + L + S + ++ + R+
Sbjct: 13 VRNLQSEVEGVKNIMTQNVERILSRGENLDHLRNKTEDLEATSEHFKTTSQKVARK 68
>sp|Q3T000|YKT6_BOVIN Synaptobrevin homolog YKT6 OS=Bos taurus GN=YKT6 PE=2 SV=1
Length = 198
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 10 YQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAK 69
YQ+ R + K+ EL E I+ ++ +L GEKLD + S L +S+ + A+
Sbjct: 130 YQNPREADPMTKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGIQSKAFYKTAR 189
Query: 70 DLNRQALI 77
N I
Sbjct: 190 KQNSCCAI 197
>sp|O15320|CTGE5_HUMAN Cutaneous T-cell lymphoma-associated antigen 5 OS=Homo sapiens
GN=CTAGE5 PE=1 SV=4
Length = 804
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 2 FIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSES 61
F + +KL Q + + + N+ ++H+ +T L EKL +V E S T E
Sbjct: 371 FENENQKLQQKLKVMTELYQENE--MKLHRKLTVEENYRLEKEEKLSKVDEKISHATEEL 428
Query: 62 RIYADKAKDLNRQ 74
Y +AKDL +
Sbjct: 429 ETYRKRAKDLEEE 441
>sp|Q3UZP0|MALD2_MOUSE MARVEL domain-containing protein 2 OS=Mus musculus GN=Marveld2 PE=1
SV=1
Length = 555
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 56 RLTSESRIYADKAKDLN-RQALIRKWAPVAIVLGVV 90
R T +R Y++K ++ N R A ++ WA + +LGVV
Sbjct: 161 RRTQTARTYSEKVEEYNLRYAYMKSWAGLLRILGVV 196
>sp|Q9XDH6|DPO3A_PSEFL DNA polymerase III subunit alpha OS=Pseudomonas fluorescens GN=dnaE
PE=3 SV=1
Length = 1173
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 7 KKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVL-GVGEKLDQVSEMSSRLTSESRIYA 65
+K Y+ R+ K+++E E+ + M R ++ V+ VG+ V ++LT S IY
Sbjct: 474 EKAYEQEEILRDFIKVDEEAAEIWE-MARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYC 532
Query: 66 DKAKD 70
D+A D
Sbjct: 533 DEAGD 537
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,468,252
Number of Sequences: 539616
Number of extensions: 1000464
Number of successful extensions: 4423
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 4358
Number of HSP's gapped (non-prelim): 86
length of query: 101
length of database: 191,569,459
effective HSP length: 70
effective length of query: 31
effective length of database: 153,796,339
effective search space: 4767686509
effective search space used: 4767686509
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)