Query 040101
Match_columns 101
No_of_seqs 102 out of 775
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 05:09:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040101.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040101hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0860 Synaptobrevin/VAMP-lik 100.0 4.9E-30 1.1E-34 168.7 11.8 84 15-98 27-110 (116)
2 PF00957 Synaptobrevin: Synapt 100.0 1.3E-29 2.7E-34 160.4 11.3 85 16-100 2-86 (89)
3 KOG0859 Synaptobrevin/VAMP-lik 100.0 6.8E-30 1.5E-34 181.2 8.6 97 2-98 110-206 (217)
4 KOG0861 SNARE protein YKT6, sy 99.8 3.4E-20 7.5E-25 129.8 7.0 72 2-73 122-193 (198)
5 KOG0862 Synaptobrevin/VAMP-lik 99.8 1.2E-17 2.5E-22 120.2 11.9 99 1-101 118-216 (216)
6 COG5143 SNC1 Synaptobrevin/VAM 99.6 7.3E-15 1.6E-19 104.3 8.0 69 10-78 122-190 (190)
7 COG5143 SNC1 Synaptobrevin/VAM 97.8 0.0001 2.2E-09 52.7 7.0 73 18-90 95-167 (190)
8 PF03908 Sec20: Sec20; InterP 97.4 0.01 2.2E-07 37.4 11.0 74 22-98 6-89 (92)
9 PF00957 Synaptobrevin: Synapt 96.9 0.041 8.9E-07 34.2 10.1 78 16-97 9-86 (89)
10 PF03908 Sec20: Sec20; InterP 96.7 0.068 1.5E-06 33.6 10.4 80 16-95 7-89 (92)
11 KOG0811 SNARE protein PEP12/VA 96.1 0.096 2.1E-06 39.4 9.8 45 16-60 179-223 (269)
12 KOG0810 SNARE protein Syntaxin 95.7 0.097 2.1E-06 39.9 8.2 78 17-96 206-286 (297)
13 KOG3251 Golgi SNAP receptor co 94.0 1.1 2.3E-05 32.8 9.6 64 36-101 137-212 (213)
14 COG5074 t-SNARE complex subuni 93.6 1.2 2.6E-05 33.3 9.3 40 19-58 187-226 (280)
15 KOG0860 Synaptobrevin/VAMP-lik 92.2 2.4 5.2E-05 28.2 10.3 58 36-100 58-115 (116)
16 PF09753 Use1: Membrane fusion 91.9 3.6 7.8E-05 30.2 10.0 27 49-75 196-222 (251)
17 KOG1983 Tomosyn and related SN 91.0 0.25 5.5E-06 43.1 3.5 47 33-79 943-989 (993)
18 KOG0812 SNARE protein SED5/Syn 90.7 6 0.00013 30.3 10.1 39 16-54 226-264 (311)
19 PRK10884 SH3 domain-containing 89.0 7 0.00015 28.3 10.5 24 12-35 88-111 (206)
20 COG5325 t-SNARE complex subuni 88.0 10 0.00022 28.9 9.8 65 16-80 194-262 (283)
21 PF04799 Fzo_mitofusin: fzo-li 87.8 2.5 5.4E-05 29.9 6.0 48 19-66 111-158 (171)
22 KOG1666 V-SNARE [Intracellular 87.5 9.4 0.0002 28.0 11.0 51 49-99 164-217 (220)
23 KOG3385 V-SNARE [Intracellular 86.8 5.6 0.00012 26.5 6.8 56 15-70 34-93 (118)
24 PF10779 XhlA: Haemolysin XhlA 86.7 4.9 0.00011 24.0 8.4 52 44-98 19-70 (71)
25 KOG3208 SNARE protein GS28 [In 86.1 9.9 0.00021 28.1 8.5 20 81-100 209-229 (231)
26 KOG0810 SNARE protein Syntaxin 84.9 3.2 6.9E-05 31.7 5.7 63 25-96 227-289 (297)
27 PF07798 DUF1640: Protein of u 83.7 12 0.00027 26.0 10.8 26 17-42 80-105 (177)
28 PRK01026 tetrahydromethanopter 83.2 8.6 0.00019 23.8 6.1 28 46-75 23-50 (77)
29 COG5074 t-SNARE complex subuni 82.1 12 0.00027 28.0 7.6 20 15-34 186-205 (280)
30 PF03904 DUF334: Domain of unk 80.1 22 0.00047 26.4 11.2 28 3-30 80-110 (230)
31 KOG0809 SNARE protein TLG2/Syn 79.0 15 0.00032 28.3 7.3 42 17-58 218-259 (305)
32 PTZ00478 Sec superfamily; Prov 78.2 11 0.00025 23.4 5.5 46 40-85 9-54 (81)
33 COG1422 Predicted membrane pro 77.6 24 0.00053 25.6 8.7 72 15-99 70-142 (201)
34 PF05739 SNARE: SNARE domain; 74.9 13 0.00028 21.0 7.8 46 16-61 3-48 (63)
35 KOG3202 SNARE protein TLG1/Syn 74.1 33 0.00072 25.4 9.6 28 16-43 136-163 (235)
36 PRK10600 nitrate/nitrite senso 73.4 46 0.001 26.7 10.4 22 23-44 67-88 (569)
37 TIGR01149 mtrG N5-methyltetrah 72.7 19 0.0004 21.9 6.2 28 46-75 20-47 (70)
38 PF13800 Sigma_reg_N: Sigma fa 72.2 11 0.00025 23.4 4.5 19 68-86 5-23 (96)
39 PF05478 Prominin: Prominin; 70.9 68 0.0015 27.6 10.1 10 78-87 410-419 (806)
40 PRK09400 secE preprotein trans 70.3 19 0.00042 21.1 5.1 39 48-86 4-42 (61)
41 PF12352 V-SNARE_C: Snare regi 70.1 18 0.00039 20.7 7.5 58 15-72 6-63 (66)
42 PF13228 DUF4037: Domain of un 70.1 24 0.00053 22.4 5.8 57 3-59 25-81 (100)
43 PF13800 Sigma_reg_N: Sigma fa 70.1 12 0.00025 23.3 4.2 25 71-95 5-29 (96)
44 KOG2678 Predicted membrane pro 69.9 25 0.00054 26.1 6.3 8 67-74 202-209 (244)
45 COG2976 Uncharacterized protei 69.9 4.9 0.00011 29.3 2.7 28 74-101 15-42 (207)
46 KOG0862 Synaptobrevin/VAMP-lik 69.0 43 0.00093 24.6 8.1 80 19-100 120-211 (216)
47 KOG1693 emp24/gp25L/p24 family 68.2 16 0.00035 26.6 5.0 34 67-100 167-201 (209)
48 PF14004 DUF4227: Protein of u 68.1 9.5 0.00021 23.2 3.3 26 75-100 2-27 (71)
49 PF04210 MtrG: Tetrahydrometha 67.3 25 0.00055 21.3 6.5 29 45-75 19-47 (70)
50 KOG1326 Membrane-associated pr 66.4 7.8 0.00017 34.3 3.6 30 70-99 1060-1089(1105)
51 cd00193 t_SNARE Soluble NSF (N 65.2 20 0.00044 19.4 6.0 45 16-60 5-49 (60)
52 PF15431 TMEM190: Transmembran 65.0 11 0.00023 25.1 3.3 21 81-101 63-83 (134)
53 PF13124 DUF3963: Protein of u 64.6 17 0.00036 19.4 3.4 23 74-96 17-39 (40)
54 TIGR00847 ccoS cytochrome oxid 64.0 9.4 0.0002 21.7 2.6 19 83-101 6-24 (51)
55 smart00397 t_SNARE Helical reg 63.8 23 0.0005 19.5 6.3 46 16-61 11-56 (66)
56 COG3197 FixS Uncharacterized p 63.0 7 0.00015 22.9 2.0 19 83-101 6-24 (58)
57 PHA02650 hypothetical protein; 62.1 9.7 0.00021 23.7 2.6 9 91-99 60-68 (81)
58 PHA03386 P10 fibrous body prot 61.0 15 0.00032 23.5 3.3 18 15-32 17-34 (94)
59 PF10717 ODV-E18: Occlusion-de 60.8 13 0.00027 23.4 2.9 16 84-99 29-44 (85)
60 PRK10404 hypothetical protein; 58.9 45 0.00098 21.4 9.1 46 14-62 6-51 (101)
61 PHA02911 C-type lectin-like pr 58.4 24 0.00052 25.8 4.4 25 42-66 2-26 (213)
62 PF06422 PDR_CDR: CDR ABC tran 57.2 17 0.00037 23.1 3.3 33 64-96 36-68 (103)
63 PF03597 CcoS: Cytochrome oxid 57.2 15 0.00032 20.3 2.5 17 84-100 6-22 (45)
64 PF06143 Baculo_11_kDa: Baculo 56.1 14 0.0003 23.2 2.6 8 75-82 31-38 (84)
65 PF02932 Neur_chan_memb: Neuro 55.8 54 0.0012 21.3 7.3 51 49-99 182-237 (237)
66 PF12575 DUF3753: Protein of u 54.5 19 0.00042 22.0 2.9 7 94-100 62-68 (72)
67 COG4064 MtrG Tetrahydromethano 54.3 48 0.001 20.2 5.8 48 45-98 22-69 (75)
68 PF01102 Glycophorin_A: Glycop 54.2 14 0.0003 24.7 2.5 15 82-96 66-80 (122)
69 KOG4782 Predicted membrane pro 53.4 53 0.0011 21.2 4.9 40 55-94 28-71 (108)
70 KOG3894 SNARE protein Syntaxin 52.5 1.1E+02 0.0024 23.8 9.1 52 17-72 232-290 (316)
71 PF15188 CCDC-167: Coiled-coil 52.0 58 0.0012 20.4 6.7 39 49-91 40-78 (85)
72 PF13044 DUF3904: Protein of u 51.0 9.9 0.00021 29.1 1.5 38 64-101 396-433 (436)
73 KOG2678 Predicted membrane pro 50.6 92 0.002 23.2 6.4 36 49-86 191-226 (244)
74 COG3524 KpsE Capsule polysacch 50.2 36 0.00077 26.6 4.4 18 16-33 229-246 (372)
75 PF12420 DUF3671: Protein of u 49.9 66 0.0014 20.7 5.1 36 48-91 21-56 (104)
76 PF03030 H_PPase: Inorganic H+ 49.7 77 0.0017 27.1 6.7 48 40-98 15-62 (682)
77 PF04639 Baculo_E56: Baculovir 49.2 17 0.00037 27.9 2.5 23 79-101 276-298 (305)
78 PF06024 DUF912: Nucleopolyhed 48.9 16 0.00034 23.4 2.0 9 90-98 74-82 (101)
79 PRK09793 methyl-accepting prot 48.6 1.4E+02 0.0031 24.0 11.7 8 4-11 98-105 (533)
80 PF05545 FixQ: Cbb3-type cytoc 48.2 40 0.00086 18.4 3.4 9 91-99 20-28 (49)
81 KOG1696 60s ribosomal protein 48.1 60 0.0013 23.2 5.0 58 2-59 101-164 (193)
82 PF08372 PRT_C: Plant phosphor 47.6 75 0.0016 22.1 5.4 25 55-79 69-93 (156)
83 smart00096 UTG Uteroglobin. 47.5 57 0.0012 19.6 4.2 39 5-43 23-62 (69)
84 PF10039 DUF2275: Predicted in 47.1 31 0.00067 25.3 3.6 23 75-97 28-50 (218)
85 KOG4515 Uncharacterized conser 46.4 32 0.00069 25.0 3.4 52 4-55 137-195 (217)
86 PHA03240 envelope glycoprotein 46.3 26 0.00056 26.0 3.1 10 81-90 214-223 (258)
87 PF10031 DUF2273: Small integr 45.5 37 0.0008 19.1 3.0 12 75-86 2-13 (51)
88 PF00482 T2SF: Type II secreti 44.8 45 0.00097 20.2 3.7 21 23-43 32-54 (124)
89 KOG3156 Uncharacterized membra 43.4 1.3E+02 0.0029 22.1 10.0 23 19-41 125-147 (220)
90 PF14992 TMCO5: TMCO5 family 43.1 1.5E+02 0.0032 22.7 10.5 13 73-85 211-223 (280)
91 PF06936 Selenoprotein_S: Sele 42.6 8.2 0.00018 27.7 0.0 23 75-97 31-53 (190)
92 KOG3230 Vacuolar assembly/sort 42.5 60 0.0013 23.8 4.4 24 23-46 132-155 (224)
93 PF03238 ESAG1: ESAG protein; 42.5 1.2E+02 0.0025 22.5 5.9 57 34-90 6-62 (231)
94 PF01956 DUF106: Integral memb 42.4 1.1E+02 0.0023 20.8 9.4 23 76-98 86-108 (168)
95 PF08858 IDEAL: IDEAL domain; 42.2 52 0.0011 17.1 3.3 19 28-46 9-27 (37)
96 PF00306 ATP-synt_ab_C: ATP sy 42.1 45 0.00098 21.2 3.5 41 33-73 3-45 (113)
97 PF11812 DUF3333: Domain of un 41.0 96 0.0021 21.4 5.1 19 75-93 13-31 (155)
98 PF06695 Sm_multidrug_ex: Puta 39.9 1E+02 0.0023 20.1 5.0 21 64-86 58-78 (121)
99 KOG1666 V-SNARE [Intracellular 39.6 1.5E+02 0.0033 21.8 10.1 51 48-99 170-220 (220)
100 TIGR00327 secE_euk_arch protei 39.4 80 0.0017 18.5 4.6 35 55-89 7-41 (61)
101 PRK12430 putative bifunctional 39.2 61 0.0013 25.8 4.3 45 45-89 101-145 (379)
102 PF02439 Adeno_E3_CR2: Adenovi 38.6 47 0.001 17.8 2.5 10 84-93 7-16 (38)
103 PF15013 CCSMST1: CCSMST1 fami 38.5 20 0.00043 22.1 1.2 20 75-97 29-48 (77)
104 PF13908 Shisa: Wnt and FGF in 37.7 25 0.00055 24.3 1.9 7 93-99 92-98 (179)
105 PF11812 DUF3333: Domain of un 37.6 1E+02 0.0022 21.3 4.8 29 72-100 7-35 (155)
106 PF11395 DUF2873: Protein of u 37.6 42 0.00091 18.0 2.3 6 95-100 24-29 (43)
107 KOG3287 Membrane trafficking p 37.1 1.7E+02 0.0038 21.7 6.8 64 33-96 151-219 (236)
108 PF14316 DUF4381: Domain of un 37.0 40 0.00087 22.5 2.7 21 80-100 21-41 (146)
109 KOG3065 SNAP-25 (synaptosome-a 36.9 1.6E+02 0.0035 22.3 6.2 53 17-69 218-270 (273)
110 PF10777 YlaC: Inner membrane 36.6 1.5E+02 0.0032 20.7 6.2 34 26-67 1-34 (155)
111 COG3808 OVP1 Inorganic pyropho 36.5 1.6E+02 0.0034 25.0 6.4 48 38-96 25-72 (703)
112 PF12279 DUF3619: Protein of u 36.4 70 0.0015 21.5 3.8 27 73-99 67-93 (131)
113 PF11694 DUF3290: Protein of u 36.1 88 0.0019 21.4 4.3 8 80-87 18-25 (149)
114 TIGR01006 polys_exp_MPA1 polys 35.6 73 0.0016 22.5 4.0 20 76-95 17-36 (226)
115 TIGR03545 conserved hypothetic 35.0 1.2E+02 0.0026 25.2 5.6 55 10-64 184-238 (555)
116 PF05478 Prominin: Prominin; 34.9 3E+02 0.0065 23.8 10.6 17 76-92 411-427 (806)
117 PF13706 PepSY_TM_3: PepSY-ass 34.9 70 0.0015 16.5 3.1 18 78-95 6-23 (37)
118 PF04155 Ground-like: Ground-l 34.8 67 0.0015 19.0 3.2 12 28-39 10-21 (76)
119 PF12751 Vac7: Vacuolar segreg 34.7 43 0.00094 26.7 2.9 20 72-91 294-313 (387)
120 KOG0859 Synaptobrevin/VAMP-lik 34.5 97 0.0021 22.7 4.4 52 24-75 125-176 (217)
121 PF06825 HSBP1: Heat shock fac 34.4 90 0.0019 17.9 3.5 19 43-61 33-51 (54)
122 PRK11875 psbT photosystem II r 34.3 61 0.0013 16.5 2.4 17 82-98 6-22 (31)
123 cd07912 Tweety_N N-terminal do 34.3 2.5E+02 0.0053 22.6 10.0 23 16-38 122-144 (418)
124 PRK02251 putative septation in 34.3 48 0.001 20.9 2.5 19 83-101 36-54 (87)
125 PRK10573 type IV pilin biogene 34.1 2.2E+02 0.0047 22.0 11.1 13 64-76 149-161 (399)
126 PF12325 TMF_TATA_bd: TATA ele 33.6 88 0.0019 20.7 3.8 23 17-39 68-90 (120)
127 PF01998 DUF131: Protein of un 33.5 85 0.0018 18.6 3.4 18 82-99 46-63 (64)
128 KOG2866 Uncharacterized conser 33.5 1.1E+02 0.0025 24.0 4.9 46 12-57 84-129 (349)
129 PF01099 Uteroglobin: Uteroglo 33.1 72 0.0016 18.6 3.1 40 4-43 20-60 (67)
130 PF15469 Sec5: Exocyst complex 32.9 1.6E+02 0.0035 20.1 6.7 48 17-64 40-87 (182)
131 KOG3385 V-SNARE [Intracellular 32.5 60 0.0013 21.6 2.9 11 64-74 73-83 (118)
132 PLN03223 Polycystin cation cha 32.5 1.1E+02 0.0023 28.8 5.1 45 15-59 1579-1623(1634)
133 PF06419 COG6: Conserved oligo 32.4 3E+02 0.0065 23.0 8.4 47 16-62 44-90 (618)
134 PF02706 Wzz: Chain length det 31.9 15 0.00033 23.7 0.0 22 75-96 11-32 (152)
135 PHA03395 p10 fibrous body prot 31.9 63 0.0014 20.4 2.8 17 15-31 16-32 (87)
136 PRK00159 putative septation in 31.9 56 0.0012 20.6 2.5 19 83-101 35-53 (87)
137 PRK15348 type III secretion sy 31.8 92 0.002 23.2 4.1 26 68-93 209-234 (249)
138 PF03310 Cauli_DNA-bind: Cauli 31.8 1.6E+02 0.0035 19.7 6.3 47 21-67 3-49 (121)
139 PRK15041 methyl-accepting chem 31.7 87 0.0019 25.4 4.3 18 48-65 499-516 (554)
140 PF06837 Fijivirus_P9-2: Fijiv 31.6 1.1E+02 0.0023 22.3 4.2 39 22-60 21-61 (214)
141 PF03907 Spo7: Spo7-like prote 31.4 2E+02 0.0043 21.0 5.6 34 64-98 17-50 (207)
142 PF07352 Phage_Mu_Gam: Bacteri 31.4 1.6E+02 0.0035 19.7 6.0 51 15-65 8-59 (149)
143 PF00429 TLV_coat: ENV polypro 31.4 1.4E+02 0.0031 24.8 5.5 22 16-37 441-462 (561)
144 PRK07668 hypothetical protein; 31.4 2.2E+02 0.0049 21.3 6.4 42 23-66 24-65 (254)
145 PHA03164 hypothetical protein; 31.3 43 0.00092 20.8 1.9 13 84-96 61-73 (88)
146 PRK11546 zraP zinc resistance 31.3 72 0.0016 21.9 3.2 23 12-34 84-106 (143)
147 PF06781 UPF0233: Uncharacteri 31.3 56 0.0012 20.6 2.5 19 83-101 35-53 (87)
148 PF10393 Matrilin_ccoil: Trime 31.1 1E+02 0.0022 17.2 3.7 37 11-47 6-42 (47)
149 PF10392 COG5: Golgi transport 30.3 1.6E+02 0.0035 19.3 5.6 60 16-75 32-95 (132)
150 PF07242 DUF1430: Protein of u 30.3 85 0.0018 19.6 3.3 29 69-97 29-57 (100)
151 PF04100 Vps53_N: Vps53-like, 30.2 1.4E+02 0.0029 23.5 5.0 39 2-40 142-180 (383)
152 PF05803 Chordopox_L2: Chordop 30.1 1.3E+02 0.0028 19.0 3.9 21 73-93 59-79 (87)
153 PF01708 Gemini_mov: Geminivir 30.0 15 0.00032 23.4 -0.3 24 77-100 34-57 (91)
154 COG5547 Small integral membran 29.9 74 0.0016 18.7 2.6 15 76-90 3-17 (62)
155 PF08006 DUF1700: Protein of u 29.4 1.9E+02 0.0041 19.8 9.5 29 25-53 21-49 (181)
156 COG0776 HimA Bacterial nucleoi 29.3 82 0.0018 20.0 3.0 27 23-49 19-45 (94)
157 PRK10753 transcriptional regul 29.3 82 0.0018 19.4 3.0 27 22-48 17-43 (90)
158 PRK13530 arsenate reductase; P 29.2 73 0.0016 20.9 3.0 23 23-45 111-133 (133)
159 PF04799 Fzo_mitofusin: fzo-li 29.1 2.1E+02 0.0046 20.2 6.5 20 21-40 102-121 (171)
160 PF12579 DUF3755: Protein of u 29.1 49 0.0011 17.2 1.7 19 16-34 16-34 (35)
161 PHA02689 ORF051 putative membr 29.0 70 0.0015 21.6 2.8 12 77-88 25-36 (128)
162 PF14899 DUF4492: Domain of un 28.9 1E+02 0.0022 18.4 3.2 23 78-100 18-40 (64)
163 PF03670 UPF0184: Uncharacteri 28.9 1.2E+02 0.0025 19.0 3.6 29 47-75 42-70 (83)
164 PF00435 Spectrin: Spectrin re 28.7 1.2E+02 0.0027 17.5 7.0 52 3-58 17-68 (105)
165 PF04906 Tweety: Tweety; Inte 28.6 3E+02 0.0065 21.8 10.0 19 17-35 103-121 (406)
166 PRK15041 methyl-accepting chem 27.6 3.3E+02 0.0072 22.0 12.3 26 19-45 122-147 (554)
167 KOG3498 Preprotein translocase 27.6 1.4E+02 0.0031 17.8 4.9 29 48-76 5-33 (67)
168 PF08614 ATG16: Autophagy prot 27.2 1.2E+02 0.0027 21.2 4.0 63 16-78 73-135 (194)
169 COG3074 Uncharacterized protei 27.1 1.6E+02 0.0034 18.1 7.1 51 15-65 16-66 (79)
170 PF06238 Borrelia_lipo_2: Borr 27.1 1.9E+02 0.004 19.0 4.6 12 26-37 61-72 (111)
171 PF06679 DUF1180: Protein of u 27.0 74 0.0016 22.3 2.7 19 82-100 98-116 (163)
172 PF04510 DUF577: Family of unk 26.9 2.4E+02 0.0051 20.1 5.9 46 24-79 126-171 (174)
173 PF00558 Vpu: Vpu protein; In 26.9 93 0.002 19.3 2.9 9 89-97 17-25 (81)
174 PF12277 DUF3618: Protein of u 26.8 1.2E+02 0.0026 16.6 3.8 27 19-45 5-31 (49)
175 CHL00031 psbT photosystem II p 26.7 69 0.0015 16.6 1.9 17 82-98 6-22 (33)
176 COG4499 Predicted membrane pro 26.7 59 0.0013 26.2 2.4 9 91-99 233-241 (434)
177 PF05399 EVI2A: Ectropic viral 26.7 59 0.0013 24.0 2.3 11 80-90 126-136 (227)
178 PF07139 DUF1387: Protein of u 26.7 2.3E+02 0.005 21.9 5.5 53 3-58 184-238 (302)
179 PTZ00436 60S ribosomal protein 26.2 1.1E+02 0.0023 24.0 3.6 70 2-71 101-176 (357)
180 PF11598 COMP: Cartilage oligo 26.0 1.3E+02 0.0027 16.6 4.2 24 17-40 8-31 (45)
181 TIGR01104 V_PPase vacuolar-typ 26.0 2.9E+02 0.0064 23.8 6.5 37 55-95 33-69 (697)
182 TIGR01478 STEVOR variant surfa 25.9 65 0.0014 24.7 2.4 24 16-39 102-125 (295)
183 PF00664 ABC_membrane: ABC tra 25.9 2.1E+02 0.0045 19.1 11.6 19 25-43 171-189 (275)
184 PHA03011 hypothetical protein; 25.9 2E+02 0.0043 18.9 5.2 50 5-56 68-117 (120)
185 PF09771 Tmemb_18A: Transmembr 25.8 1.6E+02 0.0034 19.8 4.0 39 62-100 10-48 (125)
186 PF05542 DUF760: Protein of un 25.5 76 0.0017 19.5 2.4 28 17-44 13-41 (86)
187 PF02994 Transposase_22: L1 tr 25.4 1.5E+02 0.0033 23.1 4.5 14 46-59 152-165 (370)
188 TIGR00496 frr ribosome recycli 25.4 1.7E+02 0.0037 20.5 4.4 29 16-44 141-169 (176)
189 PRK00199 ihfB integration host 25.4 1.1E+02 0.0023 18.8 3.0 26 23-48 19-44 (94)
190 PRK10381 LPS O-antigen length 25.4 1.4E+02 0.003 23.5 4.3 19 75-93 35-53 (377)
191 PF11221 Med21: Subunit 21 of 25.4 1.5E+02 0.0033 19.8 4.0 38 16-54 2-39 (144)
192 PLN02255 H(+) -translocating i 25.3 2.4E+02 0.0052 24.6 5.8 39 54-96 70-108 (765)
193 PF05531 NPV_P10: Nucleopolyhe 25.2 1.3E+02 0.0028 18.4 3.3 18 16-33 17-34 (75)
194 PTZ00370 STEVOR; Provisional 25.1 68 0.0015 24.6 2.4 25 15-39 100-124 (296)
195 PF06682 DUF1183: Protein of u 25.0 66 0.0014 24.9 2.4 14 85-98 160-173 (318)
196 PF06459 RR_TM4-6: Ryanodine R 24.9 1.5E+02 0.0033 22.4 4.3 22 79-100 172-193 (274)
197 PF09548 Spore_III_AB: Stage I 24.9 1.6E+02 0.0035 20.2 4.2 15 80-94 154-168 (170)
198 PHA02902 putative IMV membrane 24.8 1.1E+02 0.0023 18.4 2.7 12 85-96 11-22 (70)
199 PHA03029 hypothetical protein; 24.7 1.8E+02 0.0039 18.0 5.0 26 75-100 53-78 (92)
200 TIGR03017 EpsF chain length de 24.7 1.4E+02 0.003 23.3 4.2 12 75-86 9-20 (444)
201 PRK15048 methyl-accepting chem 24.7 2.5E+02 0.0054 22.5 5.7 50 16-65 465-514 (553)
202 TIGR02611 conserved hypothetic 24.6 2.2E+02 0.0048 19.0 5.2 11 87-97 101-111 (121)
203 PLN02277 H(+) -translocating i 24.5 3.2E+02 0.007 23.7 6.5 37 55-95 25-61 (730)
204 KOG1510 RNA polymerase II holo 24.5 1.7E+02 0.0037 20.0 4.0 29 16-44 2-30 (139)
205 PF12534 DUF3733: Leucine-rich 24.5 1.5E+02 0.0032 17.6 3.4 26 74-99 21-46 (65)
206 PF10498 IFT57: Intra-flagella 24.4 3.5E+02 0.0076 21.2 7.0 34 49-82 316-351 (359)
207 PF14735 HAUS4: HAUS augmin-li 23.9 3E+02 0.0066 20.3 7.9 65 8-76 166-230 (238)
208 TIGR00987 himA integration hos 23.6 1.2E+02 0.0026 18.7 3.0 27 22-48 18-44 (96)
209 PF04420 CHD5: CHD5-like prote 23.6 1.7E+02 0.0036 20.1 4.0 23 13-35 36-58 (161)
210 PF13040 DUF3901: Protein of u 23.5 1.1E+02 0.0023 16.5 2.4 27 30-56 9-35 (40)
211 PF01105 EMP24_GP25L: emp24/gp 23.2 37 0.00081 22.4 0.7 30 48-77 129-158 (183)
212 PF04888 SseC: Secretion syste 23.1 3.2E+02 0.0069 20.3 7.1 35 25-59 20-54 (306)
213 PF08900 DUF1845: Domain of un 23.1 2.1E+02 0.0045 20.7 4.6 30 11-40 56-85 (217)
214 PF06916 DUF1279: Protein of u 23.1 1.9E+02 0.0041 17.8 3.9 27 74-100 4-30 (91)
215 PF00517 GP41: Retroviral enve 23.0 2.9E+02 0.0062 19.7 6.9 18 22-39 106-123 (204)
216 COG1459 PulF Type II secretory 22.9 3.9E+02 0.0084 21.2 8.7 20 8-27 86-105 (397)
217 PF06103 DUF948: Bacterial pro 22.9 1.9E+02 0.004 17.5 7.8 16 49-64 62-77 (90)
218 PF10140 YukC: WXG100 protein 22.6 44 0.00096 26.2 1.0 15 76-90 190-204 (359)
219 TIGR00988 hip integration host 22.6 1.3E+02 0.0028 18.3 3.0 26 23-48 19-44 (94)
220 PF11190 DUF2976: Protein of u 22.1 1.5E+02 0.0032 18.6 3.2 21 73-93 56-76 (87)
221 PF08999 SP_C-Propep: Surfacta 22.0 1.6E+02 0.0035 18.5 3.3 15 79-93 32-46 (93)
222 PF04531 Phage_holin_1: Bacter 21.9 76 0.0016 19.5 1.8 22 73-94 4-25 (84)
223 PF05384 DegS: Sensor protein 21.8 2.8E+02 0.0062 19.2 5.5 46 16-65 26-72 (159)
224 PF10372 YojJ: Bacterial membr 21.5 2E+02 0.0043 17.3 5.5 22 46-67 43-64 (70)
225 PF02646 RmuC: RmuC family; I 21.5 3.3E+02 0.0073 20.5 5.6 48 17-64 13-60 (304)
226 TIGR02833 spore_III_AB stage I 21.4 2.1E+02 0.0045 19.8 4.2 13 81-93 155-167 (170)
227 PRK10299 PhoPQ regulatory prot 21.3 56 0.0012 18.3 1.0 18 79-96 3-21 (47)
228 KOG3976 Mitochondrial F1F0-ATP 21.3 3.6E+02 0.0079 20.2 5.8 47 17-63 125-171 (247)
229 KOG1602 Cis-prenyltransferase 21.2 1.2E+02 0.0027 23.0 3.1 34 16-49 91-124 (271)
230 PF11026 DUF2721: Protein of u 21.1 2.6E+02 0.0055 18.4 7.6 20 65-84 49-68 (130)
231 PF14662 CCDC155: Coiled-coil 21.0 3.3E+02 0.0072 19.7 6.4 54 20-74 39-96 (193)
232 KOG3894 SNARE protein Syntaxin 21.0 4.1E+02 0.0088 20.7 8.5 43 9-51 203-245 (316)
233 KOG1691 emp24/gp25L/p24 family 20.8 3.5E+02 0.0075 19.8 7.1 30 25-54 145-174 (210)
234 TIGR03017 EpsF chain length de 20.8 4.1E+02 0.0088 20.6 8.4 38 4-43 271-308 (444)
235 PF14914 LRRC37AB_C: LRRC37A/B 20.3 1.2E+02 0.0027 21.0 2.8 20 80-99 119-138 (154)
236 PRK08307 stage III sporulation 20.1 2.1E+02 0.0045 19.8 3.9 13 81-93 156-168 (171)
No 1
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.9e-30 Score=168.69 Aligned_cols=84 Identities=23% Similarity=0.350 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 040101 15 TQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFVVF 94 (101)
Q Consensus 15 ~~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~~w~~~k~~~ii~~iv~~~i 94 (101)
..+++.++|+||+||.+||++|++++||||++|++|+++|+.|++.|..|.++|.+++|+|||+++|+.+++++++++++
T Consensus 27 ~~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~i~l 106 (116)
T KOG0860|consen 27 ANDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGLVIIILL 106 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999988876665
Q ss_pred HHHH
Q 040101 95 WLKT 98 (101)
Q Consensus 95 ~i~~ 98 (101)
.+++
T Consensus 107 ~iii 110 (116)
T KOG0860|consen 107 VVII 110 (116)
T ss_pred HHHH
Confidence 5543
No 2
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=99.97 E-value=1.3e-29 Score=160.39 Aligned_cols=85 Identities=21% Similarity=0.477 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 040101 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFVVFW 95 (101)
Q Consensus 16 ~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~~w~~~k~~~ii~~iv~~~i~ 95 (101)
.|++.+++++++||+++|.+|++++++|||+|++|+++|++|++.|..|+++|++++|++||++||++++++++++++++
T Consensus 2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~ 81 (89)
T PF00957_consen 2 NDKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIIL 81 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhh
Q 040101 96 LKTKL 100 (101)
Q Consensus 96 i~~~~ 100 (101)
+++++
T Consensus 82 ~i~~~ 86 (89)
T PF00957_consen 82 IIIIV 86 (89)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 98875
No 3
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.8e-30 Score=181.17 Aligned_cols=97 Identities=22% Similarity=0.395 Sum_probs=92.4
Q ss_pred hHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHHHHHhhH
Q 040101 2 FIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWA 81 (101)
Q Consensus 2 ~i~~~~~~y~~~~~~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~~w~~~k 81 (101)
.+++.|+.|.++++.|+++++++|++||+++|.+|||++|+|||+||.|++|||+|+++|..|++++++++|+|||+|+|
T Consensus 110 vL~qqm~y~s~~p~id~lskvkaqv~evk~vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~r~~~r~mw~~n~k 189 (217)
T KOG0859|consen 110 VLKQQMQYCSEHPEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQGRKLRRKMWFQNMK 189 (217)
T ss_pred HHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHHHHHHHHHHHhccc
Confidence 57899999977667999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 040101 82 PVAIVLGVVFVVFWLKT 98 (101)
Q Consensus 82 ~~~ii~~iv~~~i~i~~ 98 (101)
+++++++++++++|++.
T Consensus 190 l~~iv~~~~~~~iyiiv 206 (217)
T KOG0859|consen 190 LKLIVLGVSISLIYIIV 206 (217)
T ss_pred eehhhhhHHHHHHHHHH
Confidence 99999999999988864
No 4
>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=3.4e-20 Score=129.77 Aligned_cols=72 Identities=29% Similarity=0.475 Sum_probs=69.5
Q ss_pred hHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHH
Q 040101 2 FIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNR 73 (101)
Q Consensus 2 ~i~~~~~~y~~~~~~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~ 73 (101)
+|.....+|+||.+.|++.++|+||+|+|.+|++.|+.+|+|||+||+|++|||+|+.+|+.|+|+|||.|+
T Consensus 122 ~L~~~l~kyqdP~ead~l~kvQ~EldETKiiLhkTiesVL~RgEKLDdLV~KSe~Ls~qSKmfYKsAKK~Ns 193 (198)
T KOG0861|consen 122 YLDTLLSKYQDPAEADPLLKVQNELDETKIILHKTIESVLERGEKLDDLVSKSENLSLQSKMFYKSAKKTNS 193 (198)
T ss_pred hHHHHHHHhcChhhhChHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 578889999999999999999999999999999999999999999999999999999999999999999874
No 5
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.2e-17 Score=120.17 Aligned_cols=99 Identities=52% Similarity=0.754 Sum_probs=89.8
Q ss_pred ChHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHHHHHhh
Q 040101 1 TFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKW 80 (101)
Q Consensus 1 ~~i~~~~~~y~~~~~~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~~w~~~ 80 (101)
+||++..++|+|+++.+.+.++++++.+|+.+|.+||++++.|||.|+.+..++.+|+..|+.+.++|+.++++..+.+|
T Consensus 118 ~~IQk~Kk~ynd~r~~~n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~ 197 (216)
T KOG0862|consen 118 TFIQKTKKRYNDTRSQRNLLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRKY 197 (216)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHhhC
Q 040101 81 APVAIVLGVVFVVFWLKTKLW 101 (101)
Q Consensus 81 k~~~ii~~iv~~~i~i~~~~~ 101 (101)
. .++++.+++++|+.||++
T Consensus 198 a--a~~~~~~~l~f~~~f~~~ 216 (216)
T KOG0862|consen 198 A--AYVVFFVLLLFYVRFIAC 216 (216)
T ss_pred H--HHHHHHHHHHHHHHHhhC
Confidence 8 445555666667766654
No 6
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=99.58 E-value=7.3e-15 Score=104.25 Aligned_cols=69 Identities=33% Similarity=0.510 Sum_probs=67.8
Q ss_pred hCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHHHHH
Q 040101 10 YQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIR 78 (101)
Q Consensus 10 y~~~~~~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~~w~ 78 (101)
|+||...|++.+++.+++||+.+|.+||+++|+|||+|+.|+++|+.|...|+.|.+.|++.+..+||+
T Consensus 122 y~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L~~~s~~~~k~akk~n~~~~~~ 190 (190)
T COG5143 122 YRDPSIQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSILLLSSKMFPKSAKKSNLCCLIN 190 (190)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeC
Confidence 999999999999999999999999999999999999999999999999999999999999999999984
No 7
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=97.81 E-value=0.0001 Score=52.68 Aligned_cols=73 Identities=15% Similarity=0.077 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 040101 18 NIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVV 90 (101)
Q Consensus 18 ki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~~w~~~k~~~ii~~iv 90 (101)
+...++...++++.+|..|+++.+++|++.....++..++.+.+..|+.-+.+....+|||.-|+-..++...
T Consensus 95 ~s~~~~~~~d~~~~~~~~~~d~~~e~~y~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~ss 167 (190)
T COG5143 95 KSSALEQLIDDTVGIMRVNIDKVIEKGYRDPSIQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSS 167 (190)
T ss_pred hhhhHhhcccCccchhhhhHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 5678888999999999999999999999999999999999999999999999999999999988777665444
No 8
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=97.36 E-value=0.01 Score=37.39 Aligned_cols=74 Identities=22% Similarity=0.276 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHH----------HHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040101 22 LNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIY----------ADKAKDLNRQALIRKWAPVAIVLGVVF 91 (101)
Q Consensus 22 l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f----------~k~a~kl~~~~~w~~~k~~~ii~~iv~ 91 (101)
+.+.+..++..|.+.++.- ...++.|++.|+.|......| ++--+++.|+.+..++-+++.++++++
T Consensus 6 vT~~L~rt~~~m~~ev~~s---~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~ 82 (92)
T PF03908_consen 6 VTESLRRTRQMMAQEVERS---ELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLL 82 (92)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4445555555555554433 334455555555555444433 333556777777777777777777777
Q ss_pred HHHHHHH
Q 040101 92 VVFWLKT 98 (101)
Q Consensus 92 ~~i~i~~ 98 (101)
+++||++
T Consensus 83 ~v~yI~~ 89 (92)
T PF03908_consen 83 VVLYILW 89 (92)
T ss_pred HHHHHhh
Confidence 7777764
No 9
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=96.86 E-value=0.041 Score=34.15 Aligned_cols=78 Identities=8% Similarity=0.199 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 040101 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFVVFW 95 (101)
Q Consensus 16 ~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~~w~~~k~~~ii~~iv~~~i~ 95 (101)
.+.+..+++.+.+--+-+.++-+++=+=.++-+.|.+.|+.....|...++.. ..+ .++-+-..++++++++++++
T Consensus 9 ~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~---~~~-~~k~~~i~~~iv~~~~~~i~ 84 (89)
T PF00957_consen 9 QEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKM---WWR-NYKLYIIIIIIVIIIILIII 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHH-HHHHHHhHHhhhhhhhhHHH
Confidence 45677777777777777777777777777777888888888888888876644 222 22444555555555555555
Q ss_pred HH
Q 040101 96 LK 97 (101)
Q Consensus 96 i~ 97 (101)
+.
T Consensus 85 ~~ 86 (89)
T PF00957_consen 85 IV 86 (89)
T ss_dssp HT
T ss_pred HH
Confidence 43
No 10
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=96.70 E-value=0.068 Score=33.62 Aligned_cols=80 Identities=13% Similarity=0.169 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhh---HhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 040101 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLT---SESRIYADKAKDLNRQALIRKWAPVAIVLGVVFV 92 (101)
Q Consensus 16 ~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~---~~s~~f~k~a~kl~~~~~w~~~k~~~ii~~iv~~ 92 (101)
.+.+......+.+.-+-...|.+.+-+..+.|..+.+.=..+. ..|...-+.-.+-...-.|--+-..++++++++.
T Consensus 7 T~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v~y 86 (92)
T PF03908_consen 7 TESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLVVLY 86 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3567777777887778888888888888888877766654444 3455544544444444433344445555566666
Q ss_pred HHH
Q 040101 93 VFW 95 (101)
Q Consensus 93 ~i~ 95 (101)
+++
T Consensus 87 I~~ 89 (92)
T PF03908_consen 87 ILW 89 (92)
T ss_pred Hhh
Confidence 654
No 11
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.13 E-value=0.096 Score=39.42 Aligned_cols=45 Identities=18% Similarity=0.284 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHh
Q 040101 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSE 60 (101)
Q Consensus 16 ~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~ 60 (101)
...+.+++.++.||..|+.+=-..+=+.|+.+|.+++.-+..+..
T Consensus 179 ~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~n 223 (269)
T KOG0811|consen 179 EQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVN 223 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Confidence 466899999999999999999999999999999998887766643
No 12
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.68 E-value=0.097 Score=39.91 Aligned_cols=78 Identities=23% Similarity=0.383 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHh---hhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 040101 17 RNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSR---LTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFVV 93 (101)
Q Consensus 17 dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~---L~~~s~~f~k~a~kl~~~~~w~~~k~~~ii~~iv~~~ 93 (101)
+.+-++...+.|++++-.+=--.+-..||.++.++...+. -...+..=-++|.+.-++. |++|.++|++++++++
T Consensus 206 ~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkka--RK~k~i~ii~~iii~~ 283 (297)
T KOG0810|consen 206 DEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKA--RKWKIIIIIILIIIIV 283 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhceeeeehHHHHHHH
Confidence 5678888888888888887777888888888877655433 3334333445565555555 3445555555555444
Q ss_pred HHH
Q 040101 94 FWL 96 (101)
Q Consensus 94 i~i 96 (101)
+++
T Consensus 284 v~v 286 (297)
T KOG0810|consen 284 VLV 286 (297)
T ss_pred HHh
Confidence 444
No 13
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.03 E-value=1.1 Score=32.81 Aligned_cols=64 Identities=14% Similarity=0.151 Sum_probs=30.7
Q ss_pred hHHHHHhccc-chhhhhhhhHhhhHhhHHHHHH----------HHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHhhC
Q 040101 36 NVQEVLGVGE-KLDQVSEMSSRLTSESRIYADK----------AKDLNRQALIRKWAPVAIVLGVVFVV-FWLKTKLW 101 (101)
Q Consensus 36 NI~~il~Rge-~L~~L~~ks~~L~~~s~~f~k~----------a~kl~~~~~w~~~k~~~ii~~iv~~~-i~i~~~~~ 101 (101)
-+|.+|++|. -+|+|+++-..|+..=+.+.-- -+-++|+..=- |++.++|+++|++ +|.+++||
T Consensus 137 ~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~D--k~iF~~G~i~~~v~~yl~~~wl 212 (213)
T KOG3251|consen 137 MLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVRED--KIIFYGGVILTLVIMYLFYRWL 212 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555553 3455655555555444444332 33456555433 4444444444333 44445544
No 14
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=93.57 E-value=1.2 Score=33.25 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhh
Q 040101 19 IAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLT 58 (101)
Q Consensus 19 i~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~ 58 (101)
+.++..-+.|..+...+=-+.+.++.|..|.++...++-+
T Consensus 187 ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~ 226 (280)
T COG5074 187 IKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQ 226 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHH
Confidence 4455555555555555555677888888888877765544
No 15
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.17 E-value=2.4 Score=28.21 Aligned_cols=58 Identities=16% Similarity=0.163 Sum_probs=30.2
Q ss_pred hHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q 040101 36 NVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFVVFWLKTKL 100 (101)
Q Consensus 36 NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~~w~~~k~~~ii~~iv~~~i~i~~~~ 100 (101)
.++.+-+| -|.|.+.|+.....|...++. .=.+.+ +..-...++++++++++++.+|.
T Consensus 58 kL~~L~dr---ad~L~~~as~F~~~A~klkrk---~wWkn~-Km~~il~~v~~i~l~iiii~~~~ 115 (116)
T KOG0860|consen 58 KLDELDDR---ADQLQAGASQFEKTAVKLKRK---MWWKNC-KMRIILGLVIIILLVVIIIYIFL 115 (116)
T ss_pred hHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---HHHHHH-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555444 456677888888888876543 222221 12233444444444555554444
No 16
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=91.95 E-value=3.6 Score=30.18 Aligned_cols=27 Identities=11% Similarity=0.158 Sum_probs=14.3
Q ss_pred hhhhhhHhhhHhhHHHHHHHHHHHHHH
Q 040101 49 QVSEMSSRLTSESRIYADKAKDLNRQA 75 (101)
Q Consensus 49 ~L~~ks~~L~~~s~~f~k~a~kl~~~~ 75 (101)
.|..-.+.+..+.......+.+++...
T Consensus 196 ~L~~~~~~~d~n~~~l~~~~~rl~~~~ 222 (251)
T PF09753_consen 196 VLDRTEEGLDRNLSSLKRESKRLKEHS 222 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555666666665543
No 17
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.97 E-value=0.25 Score=43.14 Aligned_cols=47 Identities=17% Similarity=0.384 Sum_probs=39.2
Q ss_pred HHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHHHHHh
Q 040101 33 MTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRK 79 (101)
Q Consensus 33 m~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~~w~~ 79 (101)
...--+.+.+|||+|+.++++|+++.+.+..|...|.++.-++-.++
T Consensus 943 ~~~a~~~l~e~~erL~~~e~~t~~~~~sa~~~s~~a~e~~~~~~~kk 989 (993)
T KOG1983|consen 943 ASGALQPLNERGERLSRLEERTAEMANSAKQFSSTAHELTGKYKVKK 989 (993)
T ss_pred hhhcchhhHhhccccchHHHHHHHhhccHHHHHHHHHHHHhhhhhhh
Confidence 34445678899999999999999999999999999998876655443
No 18
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.66 E-value=6 Score=30.34 Aligned_cols=39 Identities=10% Similarity=0.230 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhh
Q 040101 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMS 54 (101)
Q Consensus 16 ~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks 54 (101)
.+-+..+.+.+.|+=+|+.+=-..+=+.||.+.-+++..
T Consensus 226 ~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv 264 (311)
T KOG0812|consen 226 AKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNV 264 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 467889999999999999999999999997655555444
No 19
>PRK10884 SH3 domain-containing protein; Provisional
Probab=88.97 E-value=7 Score=28.27 Aligned_cols=24 Identities=4% Similarity=0.230 Sum_probs=15.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHH
Q 040101 12 DTRTQRNIAKLNDELYEVHQIMTR 35 (101)
Q Consensus 12 ~~~~~dki~~l~~~v~evk~im~~ 35 (101)
.|...+.+.+++.|++++++-+.+
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l~~ 111 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKLNN 111 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777654443
No 20
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=87.96 E-value=10 Score=28.89 Aligned_cols=65 Identities=18% Similarity=0.232 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhH----hhhHhhHHHHHHHHHHHHHHHHHhh
Q 040101 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSS----RLTSESRIYADKAKDLNRQALIRKW 80 (101)
Q Consensus 16 ~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~----~L~~~s~~f~k~a~kl~~~~~w~~~ 80 (101)
...+.++..-+.|+..|-++=-.-+-+.|+-.+.++-.-+ ++++.++...+.-.-.||..-|+-|
T Consensus 194 ~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~ 262 (283)
T COG5325 194 DEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFY 262 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhh
Confidence 3568888888999999999988999999998887765544 4444555555544444554444433
No 21
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=87.85 E-value=2.5 Score=29.91 Aligned_cols=48 Identities=10% Similarity=0.240 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHH
Q 040101 19 IAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYAD 66 (101)
Q Consensus 19 i~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k 66 (101)
...+..+|++++.-|.+.|+++-..-++||.+..++..|.+.+.-+..
T Consensus 111 f~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~ 158 (171)
T PF04799_consen 111 FARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLES 158 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999998888888888888777766544
No 22
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.46 E-value=9.4 Score=28.02 Aligned_cols=51 Identities=20% Similarity=0.262 Sum_probs=25.7
Q ss_pred hhhhhhHhhhHhhHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 040101 49 QVSEMSSRLTSESRIYADKAKDLN---RQALIRKWAPVAIVLGVVFVVFWLKTK 99 (101)
Q Consensus 49 ~L~~ks~~L~~~s~~f~k~a~kl~---~~~~w~~~k~~~ii~~iv~~~i~i~~~ 99 (101)
.|..--+-|.+.+...-++.+-++ |++.-.++-.++|+++.+++++++.|+
T Consensus 164 ~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~ilY~ 217 (220)
T KOG1666|consen 164 QLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLILYS 217 (220)
T ss_pred HHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555544444333 333444555566666666655555554
No 23
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.78 E-value=5.6 Score=26.51 Aligned_cols=56 Identities=14% Similarity=0.135 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhh----hhHhhhHhhHHHHHHHHH
Q 040101 15 TQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSE----MSSRLTSESRIYADKAKD 70 (101)
Q Consensus 15 ~~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~----ks~~L~~~s~~f~k~a~k 70 (101)
+...+..+++.|.-.|..-.+--+++=....-|+.+.+ .+.-|+..=..|+.-|+.
T Consensus 34 Nee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~ 93 (118)
T KOG3385|consen 34 NEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR 93 (118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc
Confidence 34567788888888887766555544444433443333 233333333444444444
No 24
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=86.67 E-value=4.9 Score=23.95 Aligned_cols=52 Identities=8% Similarity=0.178 Sum_probs=29.1
Q ss_pred ccchhhhhhhhHhhhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 040101 44 GEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFVVFWLKT 98 (101)
Q Consensus 44 ge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~~w~~~k~~~ii~~iv~~~i~i~~ 98 (101)
.++++.++..++.+......-..+=.++.....| -+.+++|+++.+++++++
T Consensus 19 ~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW---~~r~iiGaiI~~i~~~i~ 70 (71)
T PF10779_consen 19 EERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKW---IWRTIIGAIITAIIYLII 70 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Confidence 3445566666666666656665555555544432 344666666666555543
No 25
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.14 E-value=9.9 Score=28.08 Aligned_cols=20 Identities=20% Similarity=0.117 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHH-HHHHHHhh
Q 040101 81 APVAIVLGVVFV-VFWLKTKL 100 (101)
Q Consensus 81 k~~~ii~~iv~~-~i~i~~~~ 100 (101)
+=.+|+++|+.+ .++++|||
T Consensus 209 rdslILa~Vis~C~llllfy~ 229 (231)
T KOG3208|consen 209 RDSLILAAVISVCTLLLLFYW 229 (231)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 445666666533 34444443
No 26
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.87 E-value=3.2 Score=31.71 Aligned_cols=63 Identities=14% Similarity=0.154 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 040101 25 ELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFVVFWL 96 (101)
Q Consensus 25 ~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~~w~~~k~~~ii~~iv~~~i~i 96 (101)
.+=+-++-|.++|+.=.+++ .+-++++.+=...|..++++|+|.+.-. ++++++.++++++++
T Consensus 227 ~LVe~QgEmvd~IE~nV~~A---~~~V~~g~~~~~kAv~~qkkaRK~k~i~------ii~~iii~~v~v~~i 289 (297)
T KOG0810|consen 227 VLVESQGEMVDRIENNVENA---VDYVEQGVDHLKKAVKYQKKARKWKIII------IIILIIIIVVLVVVI 289 (297)
T ss_pred HHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhceeee------ehHHHHHHHHHhhhh
Confidence 34456777888888777766 3556665555567788988888777443 334444444444444
No 27
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=83.68 E-value=12 Score=25.97 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHh
Q 040101 17 RNIAKLNDELYEVHQIMTRNVQEVLG 42 (101)
Q Consensus 17 dki~~l~~~v~evk~im~~NI~~il~ 42 (101)
....+++.+++.++.-+.+-|+++-.
T Consensus 80 ~~~e~L~~eie~l~~~L~~ei~~l~a 105 (177)
T PF07798_consen 80 SENEKLQREIEKLRQELREEINKLRA 105 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888887776543
No 28
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=83.18 E-value=8.6 Score=23.78 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=18.2
Q ss_pred chhhhhhhhHhhhHhhHHHHHHHHHHHHHH
Q 040101 46 KLDQVSEMSSRLTSESRIYADKAKDLNRQA 75 (101)
Q Consensus 46 ~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~ 75 (101)
|||++++|-|.- .|.-|++..+++=|.-
T Consensus 23 rLD~iEeKVEft--n~Ei~Qr~GkkvGRDi 50 (77)
T PRK01026 23 RLDEIEEKVEFT--NAEIFQRIGKKVGRDI 50 (77)
T ss_pred HHHHHHHHHHHH--HHHHHHHHhHHhhhHH
Confidence 466666666653 4566777777777654
No 29
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=82.13 E-value=12 Score=28.04 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 040101 15 TQRNIAKLNDELYEVHQIMT 34 (101)
Q Consensus 15 ~~dki~~l~~~v~evk~im~ 34 (101)
+.-|+.+.-+++.+.-+-|.
T Consensus 186 ~ikkiEkt~ael~qLfndm~ 205 (280)
T COG5074 186 EIKKIEKTMAELTQLFNDME 205 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555554444443
No 30
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=80.13 E-value=22 Score=26.37 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=16.1
Q ss_pred HHHHHHHhCCcH---HHHHHHHHHHHHHHHH
Q 040101 3 IQKTKKLYQDTR---TQRNIAKLNDELYEVH 30 (101)
Q Consensus 3 i~~~~~~y~~~~---~~dki~~l~~~v~evk 30 (101)
+++..+.|++.. ..|=+..++.++++|.
T Consensus 80 L~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~ 110 (230)
T PF03904_consen 80 LEETTKDFIDKTEKVHNDFQDILQDELKDVD 110 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455566675543 2355666777766653
No 31
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.99 E-value=15 Score=28.27 Aligned_cols=42 Identities=17% Similarity=0.363 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhh
Q 040101 17 RNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLT 58 (101)
Q Consensus 17 dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~ 58 (101)
..+.++-.-+.|+..|+.+=-..+.+.|--+|-++-.-|+-+
T Consensus 218 ~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~ 259 (305)
T KOG0809|consen 218 KEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQ 259 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhh
Confidence 348888889999999999999999999988887765544443
No 32
>PTZ00478 Sec superfamily; Provisional
Probab=78.18 E-value=11 Score=23.45 Aligned_cols=46 Identities=9% Similarity=0.071 Sum_probs=31.5
Q ss_pred HHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHHHHHhhHHHHH
Q 040101 40 VLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAI 85 (101)
Q Consensus 40 il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~~w~~~k~~~i 85 (101)
+.|..+.++.+.+...+.-..|..|-+.++|=.++-..+-.+...+
T Consensus 9 ~~~~m~~~~~v~~~~~eF~kds~r~vkrctKPdrkEf~kiakat~i 54 (81)
T PTZ00478 9 LTDKSNPVGYVVSGVQEFANDSRRLIRKCTKPDAKEYTNIAYACSV 54 (81)
T ss_pred hhcccchhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3455556677777777777778888888888777777665554443
No 33
>COG1422 Predicted membrane protein [Function unknown]
Probab=77.62 E-value=24 Score=25.58 Aligned_cols=72 Identities=15% Similarity=0.276 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHH
Q 040101 15 TQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGV-VFVV 93 (101)
Q Consensus 15 ~~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~~w~~~k~~~ii~~i-v~~~ 93 (101)
+..++.++|+..+|.++-+++--++ ...++|+.|.++-.++.+....+.+ ..+|+.+.+..+ +.++
T Consensus 70 D~ekm~~~qk~m~efq~e~~eA~~~--~d~~~lkkLq~~qmem~~~Q~elmk-----------~qfkPM~~~~v~tI~~F 136 (201)
T COG1422 70 DQEKMKELQKMMKEFQKEFREAQES--GDMKKLKKLQEKQMEMMDDQRELMK-----------MQFKPMLYISVLTIPFF 136 (201)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHHH-----------HhhhhHHHHHHHHHHHH
Confidence 4567888888888887776543221 1334566676666666655554433 334555444333 3444
Q ss_pred HHHHHh
Q 040101 94 FWLKTK 99 (101)
Q Consensus 94 i~i~~~ 99 (101)
.|+..|
T Consensus 137 ~Wl~~~ 142 (201)
T COG1422 137 AWLRWF 142 (201)
T ss_pred HHHHHH
Confidence 555444
No 34
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=74.86 E-value=13 Score=20.96 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhh
Q 040101 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSES 61 (101)
Q Consensus 16 ~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s 61 (101)
.+.+..+...+.+++++..+==+.+-+.|+-|+.+++..+.-...-
T Consensus 3 d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l 48 (63)
T PF05739_consen 3 DEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENL 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHH
Confidence 3668899999999999998888888888999998888776655433
No 35
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.12 E-value=33 Score=25.40 Aligned_cols=28 Identities=7% Similarity=0.144 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhc
Q 040101 16 QRNIAKLNDELYEVHQIMTRNVQEVLGV 43 (101)
Q Consensus 16 ~dki~~l~~~v~evk~im~~NI~~il~R 43 (101)
...+...|.++=+=++..-++|..-+.|
T Consensus 136 v~~~~~~qqqm~~eQDe~Ld~ls~ti~r 163 (235)
T KOG3202|consen 136 VQEIVQLQQQMLQEQDEGLDGLSATVQR 163 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666677766666666666666555
No 36
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=73.39 E-value=46 Score=26.72 Aligned_cols=22 Identities=9% Similarity=0.135 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHhHHHHHhcc
Q 040101 23 NDELYEVHQIMTRNVQEVLGVG 44 (101)
Q Consensus 23 ~~~v~evk~im~~NI~~il~Rg 44 (101)
..+.+++.....+.+...++..
T Consensus 67 ~~~~~~~~~~w~~~~~~~~~~~ 88 (569)
T PRK10600 67 LAQLQALQDYWRNELKPALQQA 88 (569)
T ss_pred HHHHHHHHHHHHHhhhHHhhcc
Confidence 3444555555555555555443
No 37
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=72.75 E-value=19 Score=21.88 Aligned_cols=28 Identities=18% Similarity=0.330 Sum_probs=17.7
Q ss_pred chhhhhhhhHhhhHhhHHHHHHHHHHHHHH
Q 040101 46 KLDQVSEMSSRLTSESRIYADKAKDLNRQA 75 (101)
Q Consensus 46 ~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~ 75 (101)
|||.+++|-|.- .|.-|++..+++=|..
T Consensus 20 rLd~iEeKVEf~--~~E~~Qr~Gkk~GRDi 47 (70)
T TIGR01149 20 RLDEIEEKVEFV--NGEVAQRIGKKVGRDI 47 (70)
T ss_pred HHHHHHHHHHHH--HHHHHHHHhHHhhhHH
Confidence 466666666653 4556777777777654
No 38
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=72.18 E-value=11 Score=23.40 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhhHHHHHH
Q 040101 68 AKDLNRQALIRKWAPVAIV 86 (101)
Q Consensus 68 a~kl~~~~~w~~~k~~~ii 86 (101)
.||-||+..|++.-..+++
T Consensus 5 ~kK~K~k~~l~~~~isi~~ 23 (96)
T PF13800_consen 5 LKKAKRKSRLRTVVISIIS 23 (96)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4556666666655333333
No 39
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=70.94 E-value=68 Score=27.60 Aligned_cols=10 Identities=0% Similarity=0.056 Sum_probs=4.5
Q ss_pred HhhHHHHHHH
Q 040101 78 RKWAPVAIVL 87 (101)
Q Consensus 78 ~~~k~~~ii~ 87 (101)
-.|++++.++
T Consensus 410 ~~yR~~~~li 419 (806)
T PF05478_consen 410 DSYRWIVGLI 419 (806)
T ss_pred HHHHHHHHHH
Confidence 3445554443
No 40
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=70.28 E-value=19 Score=21.08 Aligned_cols=39 Identities=8% Similarity=0.090 Sum_probs=24.7
Q ss_pred hhhhhhhHhhhHhhHHHHHHHHHHHHHHHHHhhHHHHHH
Q 040101 48 DQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIV 86 (101)
Q Consensus 48 ~~L~~ks~~L~~~s~~f~k~a~kl~~~~~w~~~k~~~ii 86 (101)
+.+.+...+.-..+..+-+.|+|=.++-.++-.+..++.
T Consensus 4 ~~~~e~~~~f~~d~~rvl~~~~KPd~~Ef~~ia~~~~iG 42 (61)
T PRK09400 4 NKLQENVKNFLEDYKRVLKVARKPTREEFLLVAKVTGLG 42 (61)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 345555566666677777777777777776665554443
No 41
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=70.14 E-value=18 Score=20.71 Aligned_cols=58 Identities=12% Similarity=0.147 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHH
Q 040101 15 TQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLN 72 (101)
Q Consensus 15 ~~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~ 72 (101)
+.+.+.....-++|+.++-.+-.+.+-..++.|.....+..++.+.-..-.+--+++.
T Consensus 6 e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~ 63 (66)
T PF12352_consen 6 ESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRIS 63 (66)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5677888899999999999999999999999888888887777665444333333333
No 42
>PF13228 DUF4037: Domain of unknown function (DUF4037)
Probab=70.12 E-value=24 Score=22.41 Aligned_cols=57 Identities=16% Similarity=0.127 Sum_probs=43.0
Q ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhH
Q 040101 3 IQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTS 59 (101)
Q Consensus 3 i~~~~~~y~~~~~~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~ 59 (101)
+.++.+++...++.=....+..+...+.....-|+.+.+.||+-+..-.-.++-+.+
T Consensus 25 ~~~~R~~l~~YP~dl~~~~ia~~~~~~~qa~~~n~~ra~~R~D~~~~~~~~~~fv~~ 81 (100)
T PF13228_consen 25 FTALRERLAYYPEDLRLNKIARNLMLLAQAGQYNLGRALKRGDILAANHAISEFVRS 81 (100)
T ss_pred HHHHHHHHHHChHHHHHHHHHHHHHHhhhhhHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 456666665556666777888888888887888999999999888776666655544
No 43
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=70.08 E-value=12 Score=23.35 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=15.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH
Q 040101 71 LNRQALIRKWAPVAIVLGVVFVVFW 95 (101)
Q Consensus 71 l~~~~~w~~~k~~~ii~~iv~~~i~ 95 (101)
+|+.-|+..++..++..+++++++.
T Consensus 5 ~kK~K~k~~l~~~~isi~~~lvi~~ 29 (96)
T PF13800_consen 5 LKKAKRKSRLRTVVISIISALVIFI 29 (96)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 5566676667777777666544444
No 44
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=69.88 E-value=25 Score=26.14 Aligned_cols=8 Identities=0% Similarity=0.169 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 040101 67 KAKDLNRQ 74 (101)
Q Consensus 67 ~a~kl~~~ 74 (101)
.|.++.++
T Consensus 202 ~Serve~y 209 (244)
T KOG2678|consen 202 VSERVEKY 209 (244)
T ss_pred hhHHHHHH
Confidence 34444443
No 45
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.86 E-value=4.9 Score=29.25 Aligned_cols=28 Identities=11% Similarity=0.051 Sum_probs=21.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhhC
Q 040101 74 QALIRKWAPVAIVLGVVFVVFWLKTKLW 101 (101)
Q Consensus 74 ~~~w~~~k~~~ii~~iv~~~i~i~~~~~ 101 (101)
+.||+.-...+++++|+.+..++...||
T Consensus 15 k~wwkeNGk~li~gviLg~~~lfGW~yw 42 (207)
T COG2976 15 KDWWKENGKALIVGVILGLGGLFGWRYW 42 (207)
T ss_pred HHHHHHCCchhHHHHHHHHHHHHHHHHH
Confidence 4799988888888888877777766654
No 46
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.04 E-value=43 Score=24.59 Aligned_cols=80 Identities=15% Similarity=0.108 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhcc--------cchhhhhhh---hHhhhHhhHHHHHHHHHHHHHHHHHhhHHHHHH-
Q 040101 19 IAKLNDELYEVHQIMTRNVQEVLGVG--------EKLDQVSEM---SSRLTSESRIYADKAKDLNRQALIRKWAPVAIV- 86 (101)
Q Consensus 19 i~~l~~~v~evk~im~~NI~~il~Rg--------e~L~~L~~k---s~~L~~~s~~f~k~a~kl~~~~~w~~~k~~~ii- 86 (101)
|.+++..-++++. ++|+.++.+-- ++|+++-.+ .+.|++.|..+...|++-+....--|.+....-
T Consensus 120 IQk~Kk~ynd~r~--~~n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~ 197 (216)
T KOG0862|consen 120 IQKTKKRYNDTRS--QRNLLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRKY 197 (216)
T ss_pred HHHHHHHhcCcHH--HHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHH
Confidence 6677777777754 44554444332 345555444 355667788888888777777665555544443
Q ss_pred HHHHHHHHHHHHhh
Q 040101 87 LGVVFVVFWLKTKL 100 (101)
Q Consensus 87 ~~iv~~~i~i~~~~ 100 (101)
+..+++++++.|||
T Consensus 198 aa~~~~~~~l~f~~ 211 (216)
T KOG0862|consen 198 AAYVVFFVLLLFYV 211 (216)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445555554443
No 47
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.23 E-value=16 Score=26.63 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=21.8
Q ss_pred HHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHhh
Q 040101 67 KAKDLNRQ-ALIRKWAPVAIVLGVVFVVFWLKTKL 100 (101)
Q Consensus 67 ~a~kl~~~-~~w~~~k~~~ii~~iv~~~i~i~~~~ 100 (101)
++..++.+ +||.-+-..++++.-++=++++.+|+
T Consensus 167 tv~st~~Rv~~~Sl~e~~~vv~iSi~Qv~ilk~fF 201 (209)
T KOG1693|consen 167 TVESTNSRVTWWSLLEIIAVVVISIAQVFILKFFF 201 (209)
T ss_pred chhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 78887777777766666666666664
No 48
>PF14004 DUF4227: Protein of unknown function (DUF4227)
Probab=68.13 E-value=9.5 Score=23.18 Aligned_cols=26 Identities=4% Similarity=0.101 Sum_probs=21.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhh
Q 040101 75 ALIRKWAPVAIVLGVVFVVFWLKTKL 100 (101)
Q Consensus 75 ~~w~~~k~~~ii~~iv~~~i~i~~~~ 100 (101)
.|++..|..+++.++.+++.+.+.|+
T Consensus 2 ~~~~~ik~~~LF~~~T~lfYy~~~w~ 27 (71)
T PF14004_consen 2 RWLDMIKFFLLFTGCTLLFYYAILWV 27 (71)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788899999999888887777664
No 49
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=67.32 E-value=25 Score=21.30 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=18.2
Q ss_pred cchhhhhhhhHhhhHhhHHHHHHHHHHHHHH
Q 040101 45 EKLDQVSEMSSRLTSESRIYADKAKDLNRQA 75 (101)
Q Consensus 45 e~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~ 75 (101)
++||.+++|-|.- .|.-+++..+|+=|.-
T Consensus 19 ~rLd~iEeKvEf~--~~Ei~Qr~GkkiGRDi 47 (70)
T PF04210_consen 19 KRLDEIEEKVEFT--NAEIAQRAGKKIGRDI 47 (70)
T ss_pred HHHHHHHHHHHhH--HHHHHHHHhHHhhhHH
Confidence 4566666666643 4556777777777654
No 50
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=66.39 E-value=7.8 Score=34.35 Aligned_cols=30 Identities=10% Similarity=0.162 Sum_probs=20.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 040101 70 DLNRQALIRKWAPVAIVLGVVFVVFWLKTK 99 (101)
Q Consensus 70 kl~~~~~w~~~k~~~ii~~iv~~~i~i~~~ 99 (101)
|-=+...|+.|+++++...++++++++.++
T Consensus 1060 K~~~~i~W~~yr~~il~~l~ililll~l~~ 1089 (1105)
T KOG1326|consen 1060 KSFKFILWHRYRWYILLLLLILILLLLLAL 1089 (1105)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334557889999999887777666544333
No 51
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=65.24 E-value=20 Score=19.44 Aligned_cols=45 Identities=22% Similarity=0.291 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHh
Q 040101 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSE 60 (101)
Q Consensus 16 ~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~ 60 (101)
.+.+..+...+.+++++..+=-..+-+-|+.|+.+++..+.....
T Consensus 5 ~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~ 49 (60)
T cd00193 5 DEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVN 49 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888889999999987766666667778888887776665544
No 52
>PF15431 TMEM190: Transmembrane protein 190
Probab=65.00 E-value=11 Score=25.15 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhC
Q 040101 81 APVAIVLGVVFVVFWLKTKLW 101 (101)
Q Consensus 81 k~~~ii~~iv~~~i~i~~~~~ 101 (101)
......+++++++..|-+|||
T Consensus 63 aL~wtC~gll~Li~~iclFWW 83 (134)
T PF15431_consen 63 ALGWTCGGLLLLICSICLFWW 83 (134)
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 344455666666666666665
No 53
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=64.61 E-value=17 Score=19.41 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=13.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHH
Q 040101 74 QALIRKWAPVAIVLGVVFVVFWL 96 (101)
Q Consensus 74 ~~~w~~~k~~~ii~~iv~~~i~i 96 (101)
+.|.||...-+.+..++++-+|+
T Consensus 17 qkwirnit~cfal~vv~lvslwi 39 (40)
T PF13124_consen 17 QKWIRNITFCFALLVVVLVSLWI 39 (40)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 35888877666555555544443
No 54
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=63.99 E-value=9.4 Score=21.71 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHhhC
Q 040101 83 VAIVLGVVFVVFWLKTKLW 101 (101)
Q Consensus 83 ~~ii~~iv~~~i~i~~~~~ 101 (101)
.+|.++++++++.+..|+|
T Consensus 6 ~LIpiSl~l~~~~l~~f~W 24 (51)
T TIGR00847 6 ILIPISLLLGGVGLVAFLW 24 (51)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555544
No 55
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=63.79 E-value=23 Score=19.53 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhh
Q 040101 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSES 61 (101)
Q Consensus 16 ~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s 61 (101)
.+.+..+...+.+++++-.+=-..+-+.|+.|+.+.+..+......
T Consensus 11 ~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~ 56 (66)
T smart00397 11 DEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNL 56 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4678888999999999888766677778888888887766655443
No 56
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=63.03 E-value=7 Score=22.88 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHhhC
Q 040101 83 VAIVLGVVFVVFWLKTKLW 101 (101)
Q Consensus 83 ~~ii~~iv~~~i~i~~~~~ 101 (101)
+++-++++++++.+..|+|
T Consensus 6 ~Lipvsi~l~~v~l~~flW 24 (58)
T COG3197 6 ILIPVSILLGAVGLGAFLW 24 (58)
T ss_pred eHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554
No 57
>PHA02650 hypothetical protein; Provisional
Probab=62.10 E-value=9.7 Score=23.69 Aligned_cols=9 Identities=11% Similarity=0.043 Sum_probs=3.3
Q ss_pred HHHHHHHHh
Q 040101 91 FVVFWLKTK 99 (101)
Q Consensus 91 ~~~i~i~~~ 99 (101)
++++++.|+
T Consensus 60 ~i~~l~~fl 68 (81)
T PHA02650 60 IIVALFSFF 68 (81)
T ss_pred HHHHHHHHH
Confidence 333333333
No 58
>PHA03386 P10 fibrous body protein; Provisional
Probab=60.96 E-value=15 Score=23.54 Aligned_cols=18 Identities=11% Similarity=0.228 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 040101 15 TQRNIAKLNDELYEVHQI 32 (101)
Q Consensus 15 ~~dki~~l~~~v~evk~i 32 (101)
-.+|++.+|.+|++++.-
T Consensus 17 vd~KVdaLQ~qV~dv~~n 34 (94)
T PHA03386 17 VDTKVDALQTQLNGLEED 34 (94)
T ss_pred HhhHHHHHHHHHHHHHhc
Confidence 358899999999998843
No 59
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=60.84 E-value=13 Score=23.44 Aligned_cols=16 Identities=13% Similarity=0.343 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHh
Q 040101 84 AIVLGVVFVVFWLKTK 99 (101)
Q Consensus 84 ~ii~~iv~~~i~i~~~ 99 (101)
.|++++|+++++|.+|
T Consensus 29 tILivLVIIiLlImlf 44 (85)
T PF10717_consen 29 TILIVLVIIILLIMLF 44 (85)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 60
>PRK10404 hypothetical protein; Provisional
Probab=58.95 E-value=45 Score=21.36 Aligned_cols=46 Identities=7% Similarity=0.060 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhH
Q 040101 14 RTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESR 62 (101)
Q Consensus 14 ~~~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~ 62 (101)
...+-...++.-++++.+.+...-+. -|+.++.|-++.+..-..+.
T Consensus 6 ~~~~l~~dl~~L~~dle~Ll~~~~~~---a~e~~~~lR~r~~~~L~~ar 51 (101)
T PRK10404 6 GDTRIDDDLTLLSETLEEVLRSSGDP---ADQKYVELKARAEKALDDVK 51 (101)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555544443 44555555555544444333
No 61
>PHA02911 C-type lectin-like protein; Provisional
Probab=58.38 E-value=24 Score=25.81 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=17.5
Q ss_pred hcccchhhhhhhhHhhhHhhHHHHH
Q 040101 42 GVGEKLDQVSEMSSRLTSESRIYAD 66 (101)
Q Consensus 42 ~Rge~L~~L~~ks~~L~~~s~~f~k 66 (101)
++-..+|.|++++.-+.+.|..|+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (213)
T PHA02911 2 EMLGPIEVLEEKMKFFADASSIYQK 26 (213)
T ss_pred CccccHHHHHHHHHHHHhhhhhhhh
Confidence 4455677788887777777776655
No 62
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=57.22 E-value=17 Score=23.15 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 040101 64 YADKAKDLNRQALIRKWAPVAIVLGVVFVVFWL 96 (101)
Q Consensus 64 f~k~a~kl~~~~~w~~~k~~~ii~~iv~~~i~i 96 (101)
|-..+=.......|||+.+.+.+.++.+++.++
T Consensus 36 YL~~~y~y~~sh~WRN~GIli~f~i~f~~~~~~ 68 (103)
T PF06422_consen 36 YLEESYGYSYSHRWRNFGILIAFWIFFIVLTLL 68 (103)
T ss_pred HHhhhccccccchhhhHHHHHHHHHHHHHHHHH
Confidence 333333444556789887776665555444443
No 63
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=57.21 E-value=15 Score=20.30 Aligned_cols=17 Identities=18% Similarity=0.215 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHhh
Q 040101 84 AIVLGVVFVVFWLKTKL 100 (101)
Q Consensus 84 ~ii~~iv~~~i~i~~~~ 100 (101)
++.++++++++.+..|+
T Consensus 6 lip~sl~l~~~~l~~f~ 22 (45)
T PF03597_consen 6 LIPVSLILGLIALAAFL 22 (45)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 64
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=56.13 E-value=14 Score=23.21 Aligned_cols=8 Identities=25% Similarity=0.571 Sum_probs=3.6
Q ss_pred HHHHhhHH
Q 040101 75 ALIRKWAP 82 (101)
Q Consensus 75 ~~w~~~k~ 82 (101)
...|.+-+
T Consensus 31 sfirdFvL 38 (84)
T PF06143_consen 31 SFIRDFVL 38 (84)
T ss_pred HHHHHHHH
Confidence 44454444
No 65
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=55.81 E-value=54 Score=21.28 Aligned_cols=51 Identities=6% Similarity=0.073 Sum_probs=24.1
Q ss_pred hhhhhhHhhhHhhHHHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHh
Q 040101 49 QVSEMSSRLTSESRIYADKAKDLNRQALIRKW-----APVAIVLGVVFVVFWLKTK 99 (101)
Q Consensus 49 ~L~~ks~~L~~~s~~f~k~a~kl~~~~~w~~~-----k~~~ii~~iv~~~i~i~~~ 99 (101)
.+....+..+..+..++.+...-+.+.-|+.. ++-.++..++++++-++||
T Consensus 182 ~l~~~~~~~~~i~~~~~~~~~~~~~~~ew~~~A~viDR~~~~~F~i~f~~~~i~yw 237 (237)
T PF02932_consen 182 SLRRILEGVRFIAEHLREQDEEEEIKEEWKFVAMVIDRLFRILFPIAFILFNIVYW 237 (237)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHSTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhcccceeecccccccccccccccccccHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 34444445555555565555544444556654 4444444444444445554
No 66
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=54.50 E-value=19 Score=21.95 Aligned_cols=7 Identities=14% Similarity=-0.036 Sum_probs=2.6
Q ss_pred HHHHHhh
Q 040101 94 FWLKTKL 100 (101)
Q Consensus 94 i~i~~~~ 100 (101)
+++.|+|
T Consensus 62 ~~l~flY 68 (72)
T PF12575_consen 62 VLLTFLY 68 (72)
T ss_pred HHHHHHH
Confidence 3333433
No 67
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=54.30 E-value=48 Score=20.20 Aligned_cols=48 Identities=17% Similarity=0.417 Sum_probs=24.7
Q ss_pred cchhhhhhhhHhhhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 040101 45 EKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFVVFWLKT 98 (101)
Q Consensus 45 e~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~~w~~~k~~~ii~~iv~~~i~i~~ 98 (101)
++||++++|-|... +.-|++-.+++-|.-= =.|.++++++++.+++..
T Consensus 22 kRLdeieekvef~~--~Ev~Qr~GkkiGRDIG----ILYGlVIGlil~~i~~~l 69 (75)
T COG4064 22 KRLDEIEEKVEFVN--GEVYQRIGKKIGRDIG----ILYGLVIGLILCMIYILL 69 (75)
T ss_pred HHHHHHHHHHHhhH--HHHHHHHHHHhcchHH----HHHHHHHHHHHHHHHHHH
Confidence 35666666666543 3456666667765532 223334444444444443
No 68
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=54.21 E-value=14 Score=24.70 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 040101 82 PVAIVLGVVFVVFWL 96 (101)
Q Consensus 82 ~~~ii~~iv~~~i~i 96 (101)
+.+|++|+++.++.+
T Consensus 66 i~~Ii~gv~aGvIg~ 80 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGI 80 (122)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHH
Confidence 344444444444333
No 69
>KOG4782 consensus Predicted membrane protein [Function unknown]
Probab=53.41 E-value=53 Score=21.21 Aligned_cols=40 Identities=18% Similarity=0.333 Sum_probs=24.6
Q ss_pred HhhhHhhHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHH
Q 040101 55 SRLTSESRIYADKAKDLNRQA----LIRKWAPVAIVLGVVFVVF 94 (101)
Q Consensus 55 ~~L~~~s~~f~k~a~kl~~~~----~w~~~k~~~ii~~iv~~~i 94 (101)
|+|.-.-+.|.+++.+.++.. .-.|||-.+.++++..+|+
T Consensus 28 EdL~peQ~h~akQaE~an~ekV~~~~aknykN~is~a~i~alVi 71 (108)
T KOG4782|consen 28 EDLPPEQKHFAKQAEKANQEKVKEIFAKNYKNHISFAGIGALVI 71 (108)
T ss_pred hhCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 566666777888877776653 3345666665555544443
No 70
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.54 E-value=1.1e+02 Score=23.79 Aligned_cols=52 Identities=19% Similarity=0.377 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHH---HHHHHHHhHHHHHhcccchhhhhh----hhHhhhHhhHHHHHHHHHHH
Q 040101 17 RNIAKLNDELYE---VHQIMTRNVQEVLGVGEKLDQVSE----MSSRLTSESRIYADKAKDLN 72 (101)
Q Consensus 17 dki~~l~~~v~e---vk~im~~NI~~il~Rge~L~~L~~----ks~~L~~~s~~f~k~a~kl~ 72 (101)
|.+.+++..|-| .+++|. +++++..+++|-+.+ -++++++.-... ++|++.+
T Consensus 232 devrqie~~lvEI~~Lq~ifs---ehvl~Q~~~Id~I~d~~~~~teNIk~gNe~i-rka~~~~ 290 (316)
T KOG3894|consen 232 DEVRQIEKRLVEISALQDIFS---EHVLQQDQNIDLIHDLQSGATENIKDGNEEI-RKAKRNN 290 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcccchhhhhhhHHHH-HHHHHhc
Confidence 445555544444 444444 456777777776665 334444443333 3344333
No 71
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=51.96 E-value=58 Score=20.44 Aligned_cols=39 Identities=10% Similarity=0.172 Sum_probs=22.2
Q ss_pred hhhhhhHhhhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040101 49 QVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVF 91 (101)
Q Consensus 49 ~L~~ks~~L~~~s~~f~k~a~kl~~~~~w~~~k~~~ii~~iv~ 91 (101)
.|++--..+......+.+.=+.+++ .|-|..++.+++++
T Consensus 40 ~lE~E~~~l~~~l~~~E~eL~~Lrk----ENrK~~~ls~~l~~ 78 (85)
T PF15188_consen 40 SLEKELNELKEKLENNEKELKLLRK----ENRKSMLLSVALFF 78 (85)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHH----hhhhhHHHHHHHHH
Confidence 3444445566666667777777776 34455555544433
No 72
>PF13044 DUF3904: Protein of unknown function (DUF3904)
Probab=50.96 E-value=9.9 Score=29.11 Aligned_cols=38 Identities=29% Similarity=0.366 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhC
Q 040101 64 YADKAKDLNRQALIRKWAPVAIVLGVVFVVFWLKTKLW 101 (101)
Q Consensus 64 f~k~a~kl~~~~~w~~~k~~~ii~~iv~~~i~i~~~~~ 101 (101)
|..+-+.+.-..||.-+--|+|++.++++++.+.+.+|
T Consensus 396 yvd~ikevtgtswwmvmihyiivgliviv~vv~glklw 433 (436)
T PF13044_consen 396 YVDNIKEVTGTSWWMVMIHYIIVGLIVIVVVVFGLKLW 433 (436)
T ss_pred eecchhhccCcchHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 55566788888999999999999988887776655544
No 73
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=50.57 E-value=92 Score=23.21 Aligned_cols=36 Identities=14% Similarity=-0.064 Sum_probs=20.3
Q ss_pred hhhhhhHhhhHhhHHHHHHHHHHHHHHHHHhhHHHHHH
Q 040101 49 QVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIV 86 (101)
Q Consensus 49 ~L~~ks~~L~~~s~~f~k~a~kl~~~~~w~~~k~~~ii 86 (101)
.++..++.|.+.|....+-+++=. ..| =.+.+++++
T Consensus 191 ~~D~N~~~L~~~Serve~y~ksk~-s~w-f~~~miI~v 226 (244)
T KOG2678|consen 191 GIDVNSQGLMDVSERVEKYDKSKL-SYW-FYITMIIFV 226 (244)
T ss_pred HHhHHHHHHHhhhHHHHHHHHhhh-hHH-HHHHHHHHH
Confidence 355566777777777777665433 334 334444333
No 74
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=50.22 E-value=36 Score=26.65 Aligned_cols=18 Identities=17% Similarity=0.375 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 040101 16 QRNIAKLNDELYEVHQIM 33 (101)
Q Consensus 16 ~dki~~l~~~v~evk~im 33 (101)
.|.+..++.+++.++.+|
T Consensus 229 e~eL~~iqaqL~tvks~m 246 (372)
T COG3524 229 EDELIVIQAQLDTVKSVM 246 (372)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 356777888888899888
No 75
>PF12420 DUF3671: Protein of unknown function ; InterPro: IPR022139 This domain family is found in eukaryotes, and is typically between 96 and 116 amino acids in length.
Probab=49.86 E-value=66 Score=20.69 Aligned_cols=36 Identities=11% Similarity=0.253 Sum_probs=20.7
Q ss_pred hhhhhhhHhhhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040101 48 DQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVF 91 (101)
Q Consensus 48 ~~L~~ks~~L~~~s~~f~k~a~kl~~~~~w~~~k~~~ii~~iv~ 91 (101)
+.+++-+++.....+.|.+ .-+++|...+++.+++.
T Consensus 21 ~~I~k~~~~~n~~kk~fkk--------i~~KKyg~~~il~~l~~ 56 (104)
T PF12420_consen 21 DYIDKLKKDPNIDKKKFKK--------IIFKKYGLIFILPFLVP 56 (104)
T ss_pred HHHHHHhhCCChhHHHHHH--------HHHHHhhHHHHHHHHHH
Confidence 3455555666666666643 45567766666655554
No 76
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=49.74 E-value=77 Score=27.15 Aligned_cols=48 Identities=17% Similarity=0.386 Sum_probs=27.0
Q ss_pred HHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 040101 40 VLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFVVFWLKT 98 (101)
Q Consensus 40 il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~~w~~~k~~~ii~~iv~~~i~i~~ 98 (101)
++.+.+.=+.+.+=++..++.|..|-+ |.||...+++.++++++++.+
T Consensus 15 v~~~~~G~~~m~~Ia~~I~eGA~aFL~-----------reYk~i~~~~vi~~~ll~~~~ 62 (682)
T PF03030_consen 15 VLKQDEGNEKMQEIAAAIQEGAMAFLK-----------REYKTIAIFIVIVAILLFFLL 62 (682)
T ss_dssp HHTS----HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 344443334455555555555555533 568888888777777776665
No 77
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=49.18 E-value=17 Score=27.91 Aligned_cols=23 Identities=13% Similarity=0.537 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhC
Q 040101 79 KWAPVAIVLGVVFVVFWLKTKLW 101 (101)
Q Consensus 79 ~~k~~~ii~~iv~~~i~i~~~~~ 101 (101)
+.-+++++++.++++++|.||++
T Consensus 276 ~l~piil~IG~vl~i~~Ig~~if 298 (305)
T PF04639_consen 276 SLLPIILIIGGVLLIVFIGYFIF 298 (305)
T ss_pred hhhHHHHHHHHHHHHHHhhheee
Confidence 33455556666666666666653
No 78
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=48.94 E-value=16 Score=23.37 Aligned_cols=9 Identities=11% Similarity=0.464 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 040101 90 VFVVFWLKT 98 (101)
Q Consensus 90 v~~~i~i~~ 98 (101)
+++++++++
T Consensus 74 IlVily~Iy 82 (101)
T PF06024_consen 74 ILVILYAIY 82 (101)
T ss_pred HHHHHhhhe
Confidence 333344443
No 79
>PRK09793 methyl-accepting protein IV; Provisional
Probab=48.64 E-value=1.4e+02 Score=23.98 Aligned_cols=8 Identities=13% Similarity=0.031 Sum_probs=4.1
Q ss_pred HHHHHHhC
Q 040101 4 QKTKKLYQ 11 (101)
Q Consensus 4 ~~~~~~y~ 11 (101)
.+..+.|.
T Consensus 98 ~~~~~~~~ 105 (533)
T PRK09793 98 TTLFKSFM 105 (533)
T ss_pred HHHHHHHh
Confidence 34455664
No 80
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=48.23 E-value=40 Score=18.39 Aligned_cols=9 Identities=0% Similarity=-0.208 Sum_probs=3.4
Q ss_pred HHHHHHHHh
Q 040101 91 FVVFWLKTK 99 (101)
Q Consensus 91 ~~~i~i~~~ 99 (101)
++++.+++|
T Consensus 20 ~~F~gi~~w 28 (49)
T PF05545_consen 20 VFFIGIVIW 28 (49)
T ss_pred HHHHHHHHH
Confidence 333333333
No 81
>KOG1696 consensus 60s ribosomal protein L19 [Translation, ribosomal structure and biogenesis]
Probab=48.11 E-value=60 Score=23.21 Aligned_cols=58 Identities=7% Similarity=0.237 Sum_probs=40.7
Q ss_pred hHHHHHHHhCCcHHHHH------HHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhH
Q 040101 2 FIQKTKKLYQDTRTQRN------IAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTS 59 (101)
Q Consensus 2 ~i~~~~~~y~~~~~~dk------i~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~ 59 (101)
++..++++|.|....|+ .-+++.++=.-+.+|++.|.+.=.-..+-..|.++++....
T Consensus 101 vlRrlL~kyR~skKIdkh~YH~lY~k~KGnvFKnK~~LmE~I~K~KAe~~r~K~LadQaeArr~ 164 (193)
T KOG1696|consen 101 VLRRLLKKYRDSKKIDKHMYHDLYLKVKGNVFKNKRVLMEHIHKSKAEKAREKLLADQAEARRL 164 (193)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57788999998877665 45778888888889999988765544444445555444443
No 82
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=47.58 E-value=75 Score=22.07 Aligned_cols=25 Identities=16% Similarity=0.080 Sum_probs=13.8
Q ss_pred HhhhHhhHHHHHHHHHHHHHHHHHh
Q 040101 55 SRLTSESRIYADKAKDLNRQALIRK 79 (101)
Q Consensus 55 ~~L~~~s~~f~k~a~kl~~~~~w~~ 79 (101)
...++.-.......-+++.-.-|+.
T Consensus 69 ~rvQ~vlgd~At~gERl~allsWrd 93 (156)
T PF08372_consen 69 GRVQNVLGDVATQGERLQALLSWRD 93 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCC
Confidence 3333444445555667777777754
No 83
>smart00096 UTG Uteroglobin.
Probab=47.46 E-value=57 Score=19.63 Aligned_cols=39 Identities=10% Similarity=0.055 Sum_probs=27.8
Q ss_pred HHHHHhCCcH-HHHHHHHHHHHHHHHHHHHHHhHHHHHhc
Q 040101 5 KTKKLYQDTR-TQRNIAKLNDELYEVHQIMTRNVQEVLGV 43 (101)
Q Consensus 5 ~~~~~y~~~~-~~dki~~l~~~v~evk~im~~NI~~il~R 43 (101)
..+++|++|+ ..+...+++.=+|....-=+.||-++++.
T Consensus 23 ~~l~~y~~~~~~~ea~~~lK~cvD~L~~~~k~~i~~ll~k 62 (69)
T smart00096 23 ASLKQFKPDPDMLEAGRQLKKLVDTLPQETRENILKLTEK 62 (69)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3467897655 45778888888887777777777777653
No 84
>PF10039 DUF2275: Predicted integral membrane protein (DUF2275); InterPro: IPR018734 This domain, found in various hypothetical bacterial proteins and in the RNA polymerase sigma factor, has no known function.
Probab=47.14 E-value=31 Score=25.29 Aligned_cols=23 Identities=9% Similarity=0.219 Sum_probs=10.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHH
Q 040101 75 ALIRKWAPVAIVLGVVFVVFWLK 97 (101)
Q Consensus 75 ~~w~~~k~~~ii~~iv~~~i~i~ 97 (101)
.||+.|+..+.+++++++++...
T Consensus 28 ~~~~k~~r~~Al~alil~i~as~ 50 (218)
T PF10039_consen 28 RMWRKYKRAIALAALILFILASL 50 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555544444444444444433
No 85
>KOG4515 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.42 E-value=32 Score=24.96 Aligned_cols=52 Identities=21% Similarity=0.374 Sum_probs=36.1
Q ss_pred HHHHHHhCCcHH-HHHHHHHHHHHHHHHHHHHH------hHHHHHhcccchhhhhhhhH
Q 040101 4 QKTKKLYQDTRT-QRNIAKLNDELYEVHQIMTR------NVQEVLGVGEKLDQVSEMSS 55 (101)
Q Consensus 4 ~~~~~~y~~~~~-~dki~~l~~~v~evk~im~~------NI~~il~Rge~L~~L~~ks~ 55 (101)
....++|....+ -.|+.++..++-.++.++.+ .++.+|.-||+|+-++-+++
T Consensus 137 ~~~qk~ya~yaeq~~k~n~ls~~l~riq~~l~~~Vp~le~lN~~L~~~eRLePf~~~~d 195 (217)
T KOG4515|consen 137 RAHQKQYAGYAEQLSKLNQLSDDLCRIQIILEDIVPMLETLNEILTPDERLEPFNLGSD 195 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcccccCCcccCcc
Confidence 444556655443 36777777777777766554 56888999999998887775
No 86
>PHA03240 envelope glycoprotein M; Provisional
Probab=46.31 E-value=26 Score=26.00 Aligned_cols=10 Identities=20% Similarity=0.228 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 040101 81 APVAIVLGVV 90 (101)
Q Consensus 81 k~~~ii~~iv 90 (101)
.+++++++++
T Consensus 214 ~WIiilIIiI 223 (258)
T PHA03240 214 AWIFIAIIII 223 (258)
T ss_pred hHHHHHHHHH
Confidence 3344443333
No 87
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=45.54 E-value=37 Score=19.13 Aligned_cols=12 Identities=8% Similarity=-0.028 Sum_probs=6.9
Q ss_pred HHHHhhHHHHHH
Q 040101 75 ALIRKWAPVAIV 86 (101)
Q Consensus 75 ~~w~~~k~~~ii 86 (101)
.+|++++..++.
T Consensus 2 e~~~~~~~~iiG 13 (51)
T PF10031_consen 2 EFWKNHRGKIIG 13 (51)
T ss_pred hHHHHCcchHHH
Confidence 367777644443
No 88
>PF00482 T2SF: Type II secretion system (T2SS), protein F; InterPro: IPR018076 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) [], have been found to be evolutionary related. These are proteins of about 400 amino acids that are highly hydrophobic and which are thought to be integral protein of the inner membrane. Proteins with this domain form a platform for the type II secretion machinery, as well as the type IV pili and the archaeal flagellae [].; PDB: 2VMA_A 3C1Q_A 2VMB_B 2WHN_B.
Probab=44.79 E-value=45 Score=20.16 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHh--HHHHHhc
Q 040101 23 NDELYEVHQIMTRN--VQEVLGV 43 (101)
Q Consensus 23 ~~~v~evk~im~~N--I~~il~R 43 (101)
..+++++..-|... ++..+++
T Consensus 32 ~~~~~~~~~~l~~G~~~~~al~~ 54 (124)
T PF00482_consen 32 REELQKIRRRLRNGGSLEEALER 54 (124)
T ss_dssp HHHHHHHHHHHHTT--HHHHHCT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHH
Confidence 33344444333333 4444443
No 89
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=43.35 E-value=1.3e+02 Score=22.12 Aligned_cols=23 Identities=13% Similarity=0.302 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Q 040101 19 IAKLNDELYEVHQIMTRNVQEVL 41 (101)
Q Consensus 19 i~~l~~~v~evk~im~~NI~~il 41 (101)
-.++..+++.++.-+++-++++.
T Consensus 125 ~EklkndlEk~ks~lr~ei~~~~ 147 (220)
T KOG3156|consen 125 NEKLKNDLEKLKSSLRHEISKTT 147 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 45677888888988888888764
No 90
>PF14992 TMCO5: TMCO5 family
Probab=43.13 E-value=1.5e+02 Score=22.65 Aligned_cols=13 Identities=8% Similarity=-0.120 Sum_probs=8.4
Q ss_pred HHHHHHhhHHHHH
Q 040101 73 RQALIRKWAPVAI 85 (101)
Q Consensus 73 ~~~~w~~~k~~~i 85 (101)
+..|.+..++.+.
T Consensus 211 ~~~wkr~lr~l~f 223 (280)
T PF14992_consen 211 PTFWKRALRLLFF 223 (280)
T ss_pred hHHHHHHHHHHHH
Confidence 5677777777433
No 91
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=42.60 E-value=8.2 Score=27.67 Aligned_cols=23 Identities=9% Similarity=0.369 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHH
Q 040101 75 ALIRKWAPVAIVLGVVFVVFWLK 97 (101)
Q Consensus 75 ~~w~~~k~~~ii~~iv~~~i~i~ 97 (101)
.+..+|.+|+++++|++.++|=.
T Consensus 31 ~~L~~yGWyil~~~I~ly~l~qk 53 (190)
T PF06936_consen 31 SFLSSYGWYILFGCILLYLLWQK 53 (190)
T ss_dssp -----------------------
T ss_pred HHHHHhCHHHHHHHHHHHHHHHH
Confidence 35688999999888887776643
No 92
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.55 E-value=60 Score=23.76 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhHHHHHhcccc
Q 040101 23 NDELYEVHQIMTRNVQEVLGVGEK 46 (101)
Q Consensus 23 ~~~v~evk~im~~NI~~il~Rge~ 46 (101)
.+.++-..+.|-++||..|+..+-
T Consensus 132 se~Mdm~~Emm~daIDdal~~~ed 155 (224)
T KOG3230|consen 132 SEIMDMKEEMMDDAIDDALGDDED 155 (224)
T ss_pred HHHHHHHHHHHHHHHHHhhcccch
Confidence 345677888999999999975543
No 93
>PF03238 ESAG1: ESAG protein; InterPro: IPR004922 Trypanosoma brucei is the causative agent of sleeping sickness in humans and nagana in cattle. The parasite lives extracellularly in the blood and tissue fluids of the mammalian host, and is transmitted by the bite of infected tsetse. Each variant surface glycoprotein (Vsg) expression site (ES) in bloodstream-form T. brucei is a polycistronic transcription unit containing several distinct expression site-associated genes (esag), in addition to a single vsg gene. They are co-transcribed with the gene encoding the VSG protein, forming the surface coat of the parasite. ESAG1 genes from different ESs encode a highly polymorphic family of membrane-associated glycoproteins, whose function is unknown [].
Probab=42.46 E-value=1.2e+02 Score=22.48 Aligned_cols=57 Identities=12% Similarity=0.162 Sum_probs=42.6
Q ss_pred HHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 040101 34 TRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVV 90 (101)
Q Consensus 34 ~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~~w~~~k~~~ii~~iv 90 (101)
++.+++++.-|....+|+.|...|=..-..--+..|+.=-.+..+.-|+|..++=|+
T Consensus 6 hdKLEKLISyGN~MGDLVaKvGGLFAeVNESVRaVRkeiP~ALikaNKYYTAiAEI~ 62 (231)
T PF03238_consen 6 HDKLEKLISYGNEMGDLVAKVGGLFAEVNESVRAVRKEIPGALIKANKYYTAIAEIV 62 (231)
T ss_pred hhhHHHHHHcCcchhhHHHhccchhHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999888777666555555554556777778877776543
No 94
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=42.38 E-value=1.1e+02 Score=20.80 Aligned_cols=23 Identities=9% Similarity=0.264 Sum_probs=12.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Q 040101 76 LIRKWAPVAIVLGVVFVVFWLKT 98 (101)
Q Consensus 76 ~w~~~k~~~ii~~iv~~~i~i~~ 98 (101)
....+|..++..++.+++.+++.
T Consensus 86 ~~~~mK~~~~~~v~~i~i~~wi~ 108 (168)
T PF01956_consen 86 MMMMMKPMFVTMVPQIPIFYWIN 108 (168)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Confidence 44455666666555554444433
No 95
>PF08858 IDEAL: IDEAL domain; InterPro: IPR014957 This entry represents the C-terminal domain of Bacteriophage SPP1, p90. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. his domain may also be referred to as the IDEAL domain, after the sequence of the most conserved region of the domain.; PDB: 3DO9_A.
Probab=42.19 E-value=52 Score=17.14 Aligned_cols=19 Identities=16% Similarity=0.141 Sum_probs=14.0
Q ss_pred HHHHHHHHhHHHHHhcccc
Q 040101 28 EVHQIMTRNVQEVLGVGEK 46 (101)
Q Consensus 28 evk~im~~NI~~il~Rge~ 46 (101)
--++-+.+.||..|++|++
T Consensus 9 ~~~~~L~~~ID~ALd~~D~ 27 (37)
T PF08858_consen 9 FRKEQLLELIDEALDNRDK 27 (37)
T ss_dssp HHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHHHcCCH
Confidence 3456678899999999865
No 96
>PF00306 ATP-synt_ab_C: ATP synthase alpha/beta chain, C terminal domain; InterPro: IPR000793 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the C-terminal domain, which forms a left-handed superhelix composed of 4-5 individual helices. The C-terminal domain can vary between the alpha and beta subunits, and between different ATPases []. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3OAA_U 2F43_B 1MAB_B 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B ....
Probab=42.05 E-value=45 Score=21.19 Aligned_cols=41 Identities=12% Similarity=0.351 Sum_probs=32.6
Q ss_pred HHHhHHHHHhcccchhhhhhh--hHhhhHhhHHHHHHHHHHHH
Q 040101 33 MTRNVQEVLGVGEKLDQVSEM--SSRLTSESRIYADKAKDLNR 73 (101)
Q Consensus 33 m~~NI~~il~Rge~L~~L~~k--s~~L~~~s~~f~k~a~kl~~ 73 (101)
+.+.+..+|.++.-|+++..- +++|++..+.....|+.++.
T Consensus 3 v~~~l~~~Laq~~EL~~~~q~vG~d~L~~~~k~~l~~g~~i~e 45 (113)
T PF00306_consen 3 VAGQLKLILAQYRELEEFVQFVGSDALDDEDKLILERGRRIRE 45 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTCSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 456677788888888888886 77788888888888888876
No 97
>PF11812 DUF3333: Domain of unknown function (DUF3333); InterPro: IPR024573 This N-terminal domain is functionally uncharacterised and it is found in proteins annotated as putative phosphate ABC transporter permease proteins. This presumed domain is typically between 116 to 159 amino acids in length.
Probab=40.98 E-value=96 Score=21.42 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=8.3
Q ss_pred HHHHhhHHHHHHHHHHHHH
Q 040101 75 ALIRKWAPVAIVLGVVFVV 93 (101)
Q Consensus 75 ~~w~~~k~~~ii~~iv~~~ 93 (101)
.++|-|.+..|++++++++
T Consensus 13 ~rFr~~g~~Ai~~~l~fL~ 31 (155)
T PF11812_consen 13 RRFRAYGLAAIAIALAFLV 31 (155)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 98
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=39.93 E-value=1e+02 Score=20.10 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHH
Q 040101 64 YADKAKDLNRQALIRKWAPVAIV 86 (101)
Q Consensus 64 f~k~a~kl~~~~~w~~~k~~~ii 86 (101)
..+++++ ++.++++|....+.
T Consensus 58 ~~~k~~~--~~~~i~kyg~~GL~ 78 (121)
T PF06695_consen 58 LEKKAEK--KSKKIEKYGFWGLA 78 (121)
T ss_pred HHHHHHH--HHHHHHHHhHHHHH
Confidence 4444444 55677777655444
No 99
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.55 E-value=1.5e+02 Score=21.79 Aligned_cols=51 Identities=16% Similarity=0.312 Sum_probs=36.9
Q ss_pred hhhhhhhHhhhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 040101 48 DQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFVVFWLKTK 99 (101)
Q Consensus 48 ~~L~~ks~~L~~~s~~f~k~a~kl~~~~~w~~~k~~~ii~~iv~~~i~i~~~ 99 (101)
+-|.+-.++|.-..+....=++++.+.-| --+.+++++++++++++|..|+
T Consensus 170 ~rL~~td~~lgkS~kiL~tM~RR~~~nk~-~~~aii~~l~~~il~ilY~kf~ 220 (220)
T KOG1666|consen 170 ERLRETDANLGKSRKILTTMTRRLIRNKF-TLTAIIALLVLAILLILYSKFT 220 (220)
T ss_pred HHHHhchhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC
Confidence 45666677777777777777777776655 5677788888888888887764
No 100
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=39.44 E-value=80 Score=18.50 Aligned_cols=35 Identities=9% Similarity=0.023 Sum_probs=21.9
Q ss_pred HhhhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 040101 55 SRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGV 89 (101)
Q Consensus 55 ~~L~~~s~~f~k~a~kl~~~~~w~~~k~~~ii~~i 89 (101)
.+.-.++..+-+.|+|=.++..++-.+...+..++
T Consensus 7 ~~f~k~~~r~lk~~~KPd~~Ef~~iak~t~iG~~i 41 (61)
T TIGR00327 7 VEFIKEGTRVLAVCKKPDLEEYLKVAKVTGIGIII 41 (61)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 34445566677777777777777766655544333
No 101
>PRK12430 putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional
Probab=39.17 E-value=61 Score=25.76 Aligned_cols=45 Identities=11% Similarity=0.096 Sum_probs=30.2
Q ss_pred cchhhhhhhhHhhhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 040101 45 EKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGV 89 (101)
Q Consensus 45 e~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~~w~~~k~~~ii~~i 89 (101)
...|+..+++.+---.+++|-.+-+.-.|.+|-+.+++.++-.|+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (379)
T PRK12430 101 NSKDEVIKKTNDTLLQKNNFNRSLKNFSKTSWKKTMFYRIIPLVF 145 (379)
T ss_pred cchhHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677766666777787777777777887777766654333
No 102
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=38.58 E-value=47 Score=17.78 Aligned_cols=10 Identities=40% Similarity=0.567 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 040101 84 AIVLGVVFVV 93 (101)
Q Consensus 84 ~ii~~iv~~~ 93 (101)
.|++++++.+
T Consensus 7 aIIv~V~vg~ 16 (38)
T PF02439_consen 7 AIIVAVVVGM 16 (38)
T ss_pred hHHHHHHHHH
Confidence 4444444433
No 103
>PF15013 CCSMST1: CCSMST1 family
Probab=38.50 E-value=20 Score=22.15 Aligned_cols=20 Identities=10% Similarity=0.157 Sum_probs=11.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHH
Q 040101 75 ALIRKWAPVAIVLGVVFVVFWLK 97 (101)
Q Consensus 75 ~~w~~~k~~~ii~~iv~~~i~i~ 97 (101)
.|| +++.+.++++++++|+-
T Consensus 29 PWy---q~~~is~sl~~fliyFC 48 (77)
T PF15013_consen 29 PWY---QVYPISLSLAAFLIYFC 48 (77)
T ss_pred cce---eeehhHHHHHHHHHHHh
Confidence 565 45566666666666643
No 104
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=37.74 E-value=25 Score=24.26 Aligned_cols=7 Identities=14% Similarity=0.007 Sum_probs=2.7
Q ss_pred HHHHHHh
Q 040101 93 VFWLKTK 99 (101)
Q Consensus 93 ~i~i~~~ 99 (101)
+++|+.|
T Consensus 92 v~~Iv~~ 98 (179)
T PF13908_consen 92 VVLIVCF 98 (179)
T ss_pred HHhHhhh
Confidence 3344433
No 105
>PF11812 DUF3333: Domain of unknown function (DUF3333); InterPro: IPR024573 This N-terminal domain is functionally uncharacterised and it is found in proteins annotated as putative phosphate ABC transporter permease proteins. This presumed domain is typically between 116 to 159 amino acids in length.
Probab=37.60 E-value=1e+02 Score=21.29 Aligned_cols=29 Identities=10% Similarity=0.163 Sum_probs=21.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q 040101 72 NRQALIRKWAPVAIVLGVVFVVFWLKTKL 100 (101)
Q Consensus 72 ~~~~~w~~~k~~~ii~~iv~~~i~i~~~~ 100 (101)
+|+..=+.+|++.+.++++.+++++++|+
T Consensus 7 kR~~~e~rFr~~g~~Ai~~~l~fL~~ll~ 35 (155)
T PF11812_consen 7 KRYRAERRFRAYGLAAIAIALAFLVILLF 35 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566888888888888888877764
No 106
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=37.60 E-value=42 Score=18.01 Aligned_cols=6 Identities=17% Similarity=-0.202 Sum_probs=2.3
Q ss_pred HHHHhh
Q 040101 95 WLKTKL 100 (101)
Q Consensus 95 ~i~~~~ 100 (101)
.+++||
T Consensus 24 mliif~ 29 (43)
T PF11395_consen 24 MLIIFW 29 (43)
T ss_pred HHHHHH
Confidence 334443
No 107
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.12 E-value=1.7e+02 Score=21.69 Aligned_cols=64 Identities=9% Similarity=0.140 Sum_probs=34.4
Q ss_pred HHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHH-----HHHHHHHHhhHHHHHHHHHHHHHHHH
Q 040101 33 MTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKD-----LNRQALIRKWAPVAIVLGVVFVVFWL 96 (101)
Q Consensus 33 m~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~k-----l~~~~~w~~~k~~~ii~~iv~~~i~i 96 (101)
+.-+++.+.++-+++..=-+++..+++.+..+.-+-+- ..|-.||.-.-..+++++-++-|+++
T Consensus 151 Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr~L~esNf~rVN~WS~vq~~vmi~v~~iQVf~l 219 (236)
T KOG3287|consen 151 LDVKLDDIEDSIGTIKNNLNKMWQYQALLRAREARDRNLQESNFDRVNFWSMVQTLVMILVGIIQVFML 219 (236)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcccchhhHHHHHHHHHHHHHhhhhhhhh
Confidence 33444455555555555555666666666655444333 33446887776666555444444444
No 108
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=36.99 E-value=40 Score=22.54 Aligned_cols=21 Identities=10% Similarity=0.007 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q 040101 80 WAPVAIVLGVVFVVFWLKTKL 100 (101)
Q Consensus 80 ~k~~~ii~~iv~~~i~i~~~~ 100 (101)
..+++++++++++++++++++
T Consensus 21 ~GWwll~~lll~~~~~~~~~~ 41 (146)
T PF14316_consen 21 PGWWLLLALLLLLLILLLWRL 41 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666555543
No 109
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.93 E-value=1.6e+02 Score=22.26 Aligned_cols=53 Identities=21% Similarity=0.267 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHH
Q 040101 17 RNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAK 69 (101)
Q Consensus 17 dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~ 69 (101)
+.+.++.+-+..+|+.-.+=-.+|=...+.|+.+.++++.+...-..=-++++
T Consensus 218 ~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~ 270 (273)
T KOG3065|consen 218 ENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAK 270 (273)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHH
Confidence 45666666667777666666666666677888888888887755444334343
No 110
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=36.62 E-value=1.5e+02 Score=20.71 Aligned_cols=34 Identities=9% Similarity=0.151 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHH
Q 040101 26 LYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADK 67 (101)
Q Consensus 26 v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~ 67 (101)
++++|.++.+.|+.+=.+. +-++-.--|..|-++
T Consensus 1 Md~Ik~IL~~~id~iN~~E--------~RDnkprFs~~Fi~~ 34 (155)
T PF10777_consen 1 MDEIKRILIEEIDRINREE--------KRDNKPRFSSSFIRN 34 (155)
T ss_pred ChHHHHHHHHHHHHHHHHh--------ccCCCccccHHHHHh
Confidence 3688999999998763333 333444445555443
No 111
>COG3808 OVP1 Inorganic pyrophosphatase [Energy production and conversion]
Probab=36.54 E-value=1.6e+02 Score=25.01 Aligned_cols=48 Identities=21% Similarity=0.346 Sum_probs=27.8
Q ss_pred HHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 040101 38 QEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFVVFWL 96 (101)
Q Consensus 38 ~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~~w~~~k~~~ii~~iv~~~i~i 96 (101)
..++..++--+.+.+-|...++.|..| .-|.||.+.+++.++++++.+
T Consensus 25 ~sVl~~~~Gn~rm~eIa~aIreGA~ay-----------L~rqy~tiavv~ivva~ll~~ 72 (703)
T COG3808 25 KSVLRADAGNERMKEIAAAIREGAMAY-----------LARQYKTIAVVGIVVAILLAW 72 (703)
T ss_pred HHHHhccCCcHHHHHHHHHHHHhHHHH-----------HHhhhhHHHHHHHHHHHHHHH
Confidence 344555555555555566666665555 236788888877555544433
No 112
>PF12279 DUF3619: Protein of unknown function (DUF3619); InterPro: IPR022064 This protein is found in bacteria. Proteins in this family are about 140 amino acids in length. This protein has two conserved sequence motifs: AAR and DDLP.
Probab=36.39 E-value=70 Score=21.49 Aligned_cols=27 Identities=11% Similarity=-0.029 Sum_probs=16.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 040101 73 RQALIRKWAPVAIVLGVVFVVFWLKTK 99 (101)
Q Consensus 73 ~~~~w~~~k~~~ii~~iv~~~i~i~~~ 99 (101)
...||+.....+.++.+++.++.+.+|
T Consensus 67 ~~~~~~r~~~~~pl~aLv~gL~~i~~~ 93 (131)
T PF12279_consen 67 GGSWWRRLGLALPLLALVAGLAGINYW 93 (131)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346889888666666655544444443
No 113
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=36.14 E-value=88 Score=21.44 Aligned_cols=8 Identities=13% Similarity=0.310 Sum_probs=3.1
Q ss_pred hHHHHHHH
Q 040101 80 WAPVAIVL 87 (101)
Q Consensus 80 ~k~~~ii~ 87 (101)
.+..++++
T Consensus 18 ~~~~~i~~ 25 (149)
T PF11694_consen 18 LRYILIII 25 (149)
T ss_pred HHHHHHHH
Confidence 34444433
No 114
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family, Gram-positive type. This family contains members from Low GC Gram-positive bacteria; they are proposed to have a function in the export of complex polysaccharides.
Probab=35.57 E-value=73 Score=22.52 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=9.7
Q ss_pred HHHhhHHHHHHHHHHHHHHH
Q 040101 76 LIRKWAPVAIVLGVVFVVFW 95 (101)
Q Consensus 76 ~w~~~k~~~ii~~iv~~~i~ 95 (101)
.|++++++++++++++++.+
T Consensus 17 l~r~~~~ill~~ll~~~~a~ 36 (226)
T TIGR01006 17 LWKRKLLILIVALIFLIISF 36 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555444444333
No 115
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=35.02 E-value=1.2e+02 Score=25.19 Aligned_cols=55 Identities=11% Similarity=0.186 Sum_probs=35.5
Q ss_pred hCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHH
Q 040101 10 YQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIY 64 (101)
Q Consensus 10 y~~~~~~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f 64 (101)
|.+-++.+.+...++.+++++.-=.+|..++.+.-+.++.|........+....|
T Consensus 184 ~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~ 238 (555)
T TIGR03545 184 KKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSA 238 (555)
T ss_pred HHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4344456778888888888887433555577777777877666665544444443
No 116
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=34.89 E-value=3e+02 Score=23.77 Aligned_cols=17 Identities=6% Similarity=0.057 Sum_probs=7.2
Q ss_pred HHHhhHHHHHHHHHHHH
Q 040101 76 LIRKWAPVAIVLGVVFV 92 (101)
Q Consensus 76 ~w~~~k~~~ii~~iv~~ 92 (101)
..|.+.-.++.+.++++
T Consensus 411 ~yR~~~~lil~~~llLI 427 (806)
T PF05478_consen 411 SYRWIVGLILCCVLLLI 427 (806)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 117
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=34.86 E-value=70 Score=16.49 Aligned_cols=18 Identities=17% Similarity=0.495 Sum_probs=9.0
Q ss_pred HhhHHHHHHHHHHHHHHH
Q 040101 78 RKWAPVAIVLGVVFVVFW 95 (101)
Q Consensus 78 ~~~k~~~ii~~iv~~~i~ 95 (101)
+-.++..+++++++++++
T Consensus 6 ~~H~W~Gl~~g~~l~~~~ 23 (37)
T PF13706_consen 6 KLHRWLGLILGLLLFVIF 23 (37)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334555555555554444
No 118
>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae. It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].
Probab=34.84 E-value=67 Score=19.04 Aligned_cols=12 Identities=33% Similarity=0.720 Sum_probs=8.9
Q ss_pred HHHHHHHHhHHH
Q 040101 28 EVHQIMTRNVQE 39 (101)
Q Consensus 28 evk~im~~NI~~ 39 (101)
+.+.+|.+|+..
T Consensus 10 ~L~~ii~~~~~~ 21 (76)
T PF04155_consen 10 ELRKIILKNMKE 21 (76)
T ss_pred HHHHHHHHHhcc
Confidence 567788888875
No 119
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=34.66 E-value=43 Score=26.65 Aligned_cols=20 Identities=5% Similarity=0.217 Sum_probs=13.4
Q ss_pred HHHHHHHhhHHHHHHHHHHH
Q 040101 72 NRQALIRKWAPVAIVLGVVF 91 (101)
Q Consensus 72 ~~~~~w~~~k~~~ii~~iv~ 91 (101)
+++.||.+++..+++.++++
T Consensus 294 r~r~~~~r~~~c~~~~i~~l 313 (387)
T PF12751_consen 294 RQRSWFSRFASCIYLSILLL 313 (387)
T ss_pred ccccHHhhhhHHHHHHHHHH
Confidence 45678888877776655443
No 120
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.53 E-value=97 Score=22.71 Aligned_cols=52 Identities=19% Similarity=0.125 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHH
Q 040101 24 DELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQA 75 (101)
Q Consensus 24 ~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~ 75 (101)
+.+..++..|.|==+-++++=|++-+=.++-|-|.+.+...+.+|...+.+.
T Consensus 125 d~lskvkaqv~evk~vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~ 176 (217)
T KOG0859|consen 125 SKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQG 176 (217)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHH
Confidence 3567888888888888888888888888888888999999999998888776
No 121
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=34.42 E-value=90 Score=17.87 Aligned_cols=19 Identities=11% Similarity=0.384 Sum_probs=7.7
Q ss_pred cccchhhhhhhhHhhhHhh
Q 040101 43 VGEKLDQVSEMSSRLTSES 61 (101)
Q Consensus 43 Rge~L~~L~~ks~~L~~~s 61 (101)
=|.+|++|+..-.+|...|
T Consensus 33 M~~RIDdLE~si~dl~~qa 51 (54)
T PF06825_consen 33 MSSRIDDLEKSIADLMTQA 51 (54)
T ss_dssp HHHHHHCCHHHH-------
T ss_pred HHhhHHHHHHHHHHHHHhc
Confidence 3556777766666665544
No 122
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=34.30 E-value=61 Score=16.54 Aligned_cols=17 Identities=12% Similarity=0.209 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 040101 82 PVAIVLGVVFVVFWLKT 98 (101)
Q Consensus 82 ~~~ii~~iv~~~i~i~~ 98 (101)
+.+++++.+.++++.++
T Consensus 6 Ytfll~~tlgiiFFAIf 22 (31)
T PRK11875 6 YILILTLALVTLFFAIA 22 (31)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 34444444433334333
No 123
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=34.28 E-value=2.5e+02 Score=22.60 Aligned_cols=23 Identities=9% Similarity=0.290 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Q 040101 16 QRNIAKLNDELYEVHQIMTRNVQ 38 (101)
Q Consensus 16 ~dki~~l~~~v~evk~im~~NI~ 38 (101)
.+-++.+.++++.+.+.+...++
T Consensus 122 n~tv~~l~nqv~~l~~al~~t~~ 144 (418)
T cd07912 122 NHTVAGIDNQTSDTEASLNVTVE 144 (418)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Confidence 45566666666666666655554
No 124
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=34.27 E-value=48 Score=20.91 Aligned_cols=19 Identities=16% Similarity=0.260 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHhhC
Q 040101 83 VAIVLGVVFVVFWLKTKLW 101 (101)
Q Consensus 83 ~~ii~~iv~~~i~i~~~~~ 101 (101)
.+++++.++.++|++.||+
T Consensus 36 ~~m~~lm~~Gl~WlvvyYl 54 (87)
T PRK02251 36 PLFVALMIIGLIWLVVYYL 54 (87)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4566777777778777663
No 125
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=34.08 E-value=2.2e+02 Score=21.95 Aligned_cols=13 Identities=8% Similarity=0.240 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 040101 64 YADKAKDLNRQAL 76 (101)
Q Consensus 64 f~k~a~kl~~~~~ 76 (101)
+...-.+++++..
T Consensus 149 ~~~~~~~~~~~i~ 161 (399)
T PRK10573 149 QQEAQQQLTKKVK 161 (399)
T ss_pred HHHHHHHHHHHHH
Confidence 4444445555443
No 126
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=33.55 E-value=88 Score=20.71 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 040101 17 RNIAKLNDELYEVHQIMTRNVQE 39 (101)
Q Consensus 17 dki~~l~~~v~evk~im~~NI~~ 39 (101)
..+..++.++++...--...++.
T Consensus 68 ~~~~~L~~el~~l~~ry~t~Lel 90 (120)
T PF12325_consen 68 KEVEELEQELEELQQRYQTLLEL 90 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554443333333
No 127
>PF01998 DUF131: Protein of unknown function DUF131; InterPro: IPR002849 This archaebacterial protein family has no known function. The proteins are predicted to contain two transmembrane helices.
Probab=33.49 E-value=85 Score=18.55 Aligned_cols=18 Identities=17% Similarity=0.438 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 040101 82 PVAIVLGVVFVVFWLKTK 99 (101)
Q Consensus 82 ~~~ii~~iv~~~i~i~~~ 99 (101)
...++.++++.++++.+|
T Consensus 46 ~~~~ilaiil~i~~~l~~ 63 (64)
T PF01998_consen 46 KIAMILAIILMILALLLF 63 (64)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455545555444
No 128
>KOG2866 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.47 E-value=1.1e+02 Score=24.02 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=36.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhh
Q 040101 12 DTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRL 57 (101)
Q Consensus 12 ~~~~~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L 57 (101)
+....++.+.|.++++.....+..-++.+++.++.|+......+..
T Consensus 84 ~~~~~~~~neI~~~v~~l~qe~~~~~e~i~da~~~l~~a~~~is~~ 129 (349)
T KOG2866|consen 84 DKADVDKENEILNEVENLHQEVRLPREDIADAENLLDLAASDISKA 129 (349)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhHHHHH
Confidence 3345677788888999999999999999999998888776554433
No 129
>PF01099 Uteroglobin: Uteroglobin family; InterPro: IPR006038 Uteroglobin (or blastokinin) is a mammalian steroid-inducible secreted protein originally isolated from the uterus of rabbits during early pregnancy. The mucosal epithelia of several organs that communicate with the external environment express uteroglobin. Its tissue-specific expression is regulated by steroid hormones, and is augmented in the uterus by non-steroidal prolactin. Uteroglobin may be a multi-functional protein with anti-inflammatory/immunomodulatory properties, acting to inhibit phospholipase A2 activity, and binding to (and possibly sequestering) several hydrophobic ligands such as progesterone, retinols, polychlorinated biphenyls, phospholipids and prostaglandins. In addition, uteroglobin has anti-chemotactic, anti-allergic, anti-tumourigenic and embryo growth-stimulatory properties. Uteroglobin may have a homeostatic role against oxidative damage, inflammation, autoimmunity and cancer [, , , ]. Uteroglobin consists of a disulphide-linked dimer of two identical polypeptides, each polypeptide being composed of four helices. It is a member of the secretoglobin superfamily. This entry represents uteroglobin proteins from several mammalian species, as well as other members of the secretoglobin superfamily, such as lipophilin B [], prostatic steroid-binding protein [], mammaglobin [], and the related allergen Fel d 1 (Felis domesticus allergen 1) [].; GO: 0005488 binding, 0005576 extracellular region; PDB: 1UTR_B 1CCD_A 1UTG_A 2UTG_A 1ZKR_B 1PUO_B 2EJN_B.
Probab=33.07 E-value=72 Score=18.57 Aligned_cols=40 Identities=10% Similarity=0.148 Sum_probs=27.2
Q ss_pred HHHHHHhCCcH-HHHHHHHHHHHHHHHHHHHHHhHHHHHhc
Q 040101 4 QKTKKLYQDTR-TQRNIAKLNDELYEVHQIMTRNVQEVLGV 43 (101)
Q Consensus 4 ~~~~~~y~~~~-~~dki~~l~~~v~evk~im~~NI~~il~R 43 (101)
+..++.|+.|+ ..+...++++=+++...-=+.|+.++|+.
T Consensus 20 ~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~~ 60 (67)
T PF01099_consen 20 KESLQKYNPPPEAVEAKLELKQCVDKLSNETRENILKLLEK 60 (67)
T ss_dssp HHHHHCC---HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45577886554 56788888888888888888888877753
No 130
>PF15469 Sec5: Exocyst complex component Sec5
Probab=32.93 E-value=1.6e+02 Score=20.08 Aligned_cols=48 Identities=19% Similarity=0.231 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHH
Q 040101 17 RNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIY 64 (101)
Q Consensus 17 dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f 64 (101)
..+..+...++++......-..-+++|.++.+.+..-=+-|.....-|
T Consensus 40 ~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l~r~~flF 87 (182)
T PF15469_consen 40 SGTEKLEESLNEASSKANSVFKPLLERREKADKLRNALEFLQRNRFLF 87 (182)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 458888888888888888888888888888888776666665554444
No 131
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.51 E-value=60 Score=21.64 Aligned_cols=11 Identities=9% Similarity=0.147 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 040101 64 YADKAKDLNRQ 74 (101)
Q Consensus 64 f~k~a~kl~~~ 74 (101)
|-..+-.+.+.
T Consensus 73 fdsts~~L~gt 83 (118)
T KOG3385|consen 73 FDSTSGFLSGT 83 (118)
T ss_pred hhhhHHHHHHH
Confidence 44444444433
No 132
>PLN03223 Polycystin cation channel protein; Provisional
Probab=32.45 E-value=1.1e+02 Score=28.77 Aligned_cols=45 Identities=13% Similarity=0.174 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhH
Q 040101 15 TQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTS 59 (101)
Q Consensus 15 ~~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~ 59 (101)
+.|.+.+-++.+-+++.-+.++--+++++.+++.++++|-.+|..
T Consensus 1579 e~~~L~~s~erL~~~Q~~l~egQ~k~~~~Q~~la~~q~kl~~l~~ 1623 (1634)
T PLN03223 1579 EVDQLQQSLERLAEVQRELAEGQVKVIEGQKQMAERQSRLSQLEN 1623 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 456677778888888888999999999999999999888777654
No 133
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=32.39 E-value=3e+02 Score=23.02 Aligned_cols=47 Identities=11% Similarity=0.220 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhH
Q 040101 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESR 62 (101)
Q Consensus 16 ~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~ 62 (101)
.+.+..++..|++..+...+--+.+-.....-..+.++++.|.....
T Consensus 44 ~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~ 90 (618)
T PF06419_consen 44 NRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKE 90 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666555555444444444444444444444433
No 134
>PF02706 Wzz: Chain length determinant protein; InterPro: IPR003856 A number of related proteins are involved in the synthesis of lipopolysaccharide, O-antigen polysaccharide, capsule polysaccharide and exopolysaccharides. Chain length determinant protein (or wzz protein) is involved in lipopolysaccharide (lps) biosynthesis, conferring a modal distribution of chain length on the O-antigen component of lps []. It gives rise to a reduced number of short chain molecules and increases in numbers of longer molecules, with a modal value of 20. The MPA/MPA2 proteins function in CPS and EPS polymerisation and export [].; GO: 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane; PDB: 4E2H_C 3B8P_A 4E2C_B 4E29_A 3B8O_G 4E2L_I 3B8N_D 3B8M_C.
Probab=31.88 E-value=15 Score=23.73 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHH
Q 040101 75 ALIRKWAPVAIVLGVVFVVFWL 96 (101)
Q Consensus 75 ~~w~~~k~~~ii~~iv~~~i~i 96 (101)
..||+.+++++++++++++.++
T Consensus 11 ~l~r~~~~i~~~~~l~~~~a~~ 32 (152)
T PF02706_consen 11 ILWRRKWLIIIVTLLFAILAFI 32 (152)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666665555544443
No 135
>PHA03395 p10 fibrous body protein; Provisional
Probab=31.86 E-value=63 Score=20.40 Aligned_cols=17 Identities=12% Similarity=0.257 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 040101 15 TQRNIAKLNDELYEVHQ 31 (101)
Q Consensus 15 ~~dki~~l~~~v~evk~ 31 (101)
-.+|+..+|.+|++++.
T Consensus 16 vd~KVdalQ~~V~~l~~ 32 (87)
T PHA03395 16 VSDKVDALQAAVDDVRA 32 (87)
T ss_pred HhhHHHHHHHHHHHHHh
Confidence 35888999999998853
No 136
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=31.85 E-value=56 Score=20.63 Aligned_cols=19 Identities=16% Similarity=0.263 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhhC
Q 040101 83 VAIVLGVVFVVFWLKTKLW 101 (101)
Q Consensus 83 ~~ii~~iv~~~i~i~~~~~ 101 (101)
.+.+++.++.++|++.||+
T Consensus 35 ~~m~glm~~GllWlvvyYl 53 (87)
T PRK00159 35 VLMLGLMLIGLAWLVVNYL 53 (87)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4556677777777777663
No 137
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=31.83 E-value=92 Score=23.24 Aligned_cols=26 Identities=8% Similarity=-0.017 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Q 040101 68 AKDLNRQALIRKWAPVAIVLGVVFVV 93 (101)
Q Consensus 68 a~kl~~~~~w~~~k~~~ii~~iv~~~ 93 (101)
+.+-+--.||+.|.+.++++..++++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (249)
T PRK15348 209 ANKGKVVKWLMKYPYQLMLSLTGLLL 234 (249)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45555668999999888777664433
No 138
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=31.81 E-value=1.6e+02 Score=19.70 Aligned_cols=47 Identities=17% Similarity=0.180 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHH
Q 040101 21 KLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADK 67 (101)
Q Consensus 21 ~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~ 67 (101)
++..+|.++..-|.+-.+++-+=-++++.....++.|...|...-+.
T Consensus 3 ~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkD 49 (121)
T PF03310_consen 3 TIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKD 49 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Confidence 44455555544444333333333345556666667777655544443
No 139
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=31.67 E-value=87 Score=25.41 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=7.4
Q ss_pred hhhhhhhHhhhHhhHHHH
Q 040101 48 DQVSEMSSRLTSESRIYA 65 (101)
Q Consensus 48 ~~L~~ks~~L~~~s~~f~ 65 (101)
+.|.+.++.|......|+
T Consensus 499 ~~l~~~a~~L~~~v~~Fk 516 (554)
T PRK15041 499 AALEEQASRLTEAVAVFR 516 (554)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 334444444444444443
No 140
>PF06837 Fijivirus_P9-2: Fijivirus P9-2 protein; InterPro: IPR009650 This family consists of several Fijivirus specific P9-2 proteins from Rice black streaked dwarf virus (RBSDV) and Fiji disease virus. The function of this family is unknown.
Probab=31.55 E-value=1.1e+02 Score=22.29 Aligned_cols=39 Identities=13% Similarity=0.239 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHH--hHHHHHhcccchhhhhhhhHhhhHh
Q 040101 22 LNDELYEVHQIMTR--NVQEVLGVGEKLDQVSEMSSRLTSE 60 (101)
Q Consensus 22 l~~~v~evk~im~~--NI~~il~Rge~L~~L~~ks~~L~~~ 60 (101)
.+-|++.++.+|++ |-+.++||.-.=++|+++-++|+..
T Consensus 21 aKiq~~~~k~~m~d~snf~~ife~~~sdse~Dd~vd~lE~~ 61 (214)
T PF06837_consen 21 AKIQIESIKPIMQDFSNFDEIFERPLSDSELDDKVDKLETD 61 (214)
T ss_pred HHHHHHhhhHHHHhccchHHHHcccCcchhHHHHHHHHhhh
Confidence 34458888999986 8899999977777777777777643
No 141
>PF03907 Spo7: Spo7-like protein; InterPro: IPR005605 Saccharomyces cerevisiae (Baker's yeast) Spo7 P18410 from SWISSPROT is an integral nuclear/ER membrane protein of unknown function, required for normal nuclear envelope morphology and sporulation [].
Probab=31.44 E-value=2e+02 Score=21.03 Aligned_cols=34 Identities=6% Similarity=-0.023 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 040101 64 YADKAKDLNRQALIRKWAPVAIVLGVVFVVFWLKT 98 (101)
Q Consensus 64 f~k~a~kl~~~~~w~~~k~~~ii~~iv~~~i~i~~ 98 (101)
.+.++.+++.+-| ++.-...+++++++++++-.|
T Consensus 17 LR~q~~~lr~rrr-kyt~FL~~L~~~i~~~~y~lf 50 (207)
T PF03907_consen 17 LRQQYLQLRARRR-KYTFFLSLLCLWIAFFFYALF 50 (207)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhh
Confidence 5566666665544 333344444444444444443
No 142
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=31.41 E-value=1.6e+02 Score=19.67 Aligned_cols=51 Identities=16% Similarity=0.202 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhcc-cchhhhhhhhHhhhHhhHHHH
Q 040101 15 TQRNIAKLNDELYEVHQIMTRNVQEVLGVG-EKLDQVSEMSSRLTSESRIYA 65 (101)
Q Consensus 15 ~~dki~~l~~~v~evk~im~~NI~~il~Rg-e~L~~L~~ks~~L~~~s~~f~ 65 (101)
.-.++..++.+++++...|.+.|+.+-++- +.+..|....+.|...-..|.
T Consensus 8 al~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y~ 59 (149)
T PF07352_consen 8 ALRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQAYA 59 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788889999999999999998886653 445666666666666555554
No 143
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=31.40 E-value=1.4e+02 Score=24.76 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 040101 16 QRNIAKLNDELYEVHQIMTRNV 37 (101)
Q Consensus 16 ~dki~~l~~~v~evk~im~~NI 37 (101)
.+.++.++++|+.+.++..+|=
T Consensus 441 ~~~i~~l~~~~~sl~~~v~qnr 462 (561)
T PF00429_consen 441 EDSISALQEQLTSLAEVVLQNR 462 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCc
Confidence 4778899999999999888884
No 144
>PRK07668 hypothetical protein; Validated
Probab=31.40 E-value=2.2e+02 Score=21.27 Aligned_cols=42 Identities=5% Similarity=-0.009 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHH
Q 040101 23 NDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYAD 66 (101)
Q Consensus 23 ~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k 66 (101)
.+|.+|+-+-|.+.+-+.-++|..-+++-.. +-..-|+.+-+
T Consensus 24 eeeieeiL~Ei~~hLlEgQk~GkTA~~IfG~--sPk~yA~EL~~ 65 (254)
T PRK07668 24 EEDIESFLEDAELHLIEGEKDGKTVEDIFGD--SPKEYANELVK 65 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcHHHHhCC--CHHHHHHHHhc
Confidence 6778888888888999999999999999886 22333444444
No 145
>PHA03164 hypothetical protein; Provisional
Probab=31.35 E-value=43 Score=20.84 Aligned_cols=13 Identities=8% Similarity=0.409 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 040101 84 AIVLGVVFVVFWL 96 (101)
Q Consensus 84 ~ii~~iv~~~i~i 96 (101)
+++.++++.+|+.
T Consensus 61 lvLtgLaIamILf 73 (88)
T PHA03164 61 LVLTGLAIAMILF 73 (88)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444333333
No 146
>PRK11546 zraP zinc resistance protein; Provisional
Probab=31.26 E-value=72 Score=21.89 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=16.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Q 040101 12 DTRTQRNIAKLNDELYEVHQIMT 34 (101)
Q Consensus 12 ~~~~~dki~~l~~~v~evk~im~ 34 (101)
++++..++.++..|+.+++.-|.
T Consensus 84 ~~pD~~kI~aL~kEI~~Lr~kL~ 106 (143)
T PRK11546 84 NPPDSSKINAVAKEMENLRQSLD 106 (143)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 44566778888888888877554
No 147
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=31.26 E-value=56 Score=20.56 Aligned_cols=19 Identities=5% Similarity=0.174 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhhC
Q 040101 83 VAIVLGVVFVVFWLKTKLW 101 (101)
Q Consensus 83 ~~ii~~iv~~~i~i~~~~~ 101 (101)
.+.+++.++.++|++.||+
T Consensus 35 p~m~~lmllGL~WiVvyYi 53 (87)
T PF06781_consen 35 PLMLGLMLLGLLWIVVYYI 53 (87)
T ss_pred HHHHHHHHHHHHHHhhhhc
Confidence 4556667777778777653
No 148
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=31.14 E-value=1e+02 Score=17.16 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=22.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcccch
Q 040101 11 QDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKL 47 (101)
Q Consensus 11 ~~~~~~dki~~l~~~v~evk~im~~NI~~il~Rge~L 47 (101)
.||...+.+-.-|..+.+--..+...++.+-.|=+.|
T Consensus 6 edpC~CEslv~FQ~~v~~~lq~Lt~kL~~vs~RLe~L 42 (47)
T PF10393_consen 6 EDPCKCESLVAFQNKVTSALQSLTQKLDAVSKRLEAL 42 (47)
T ss_dssp S-SS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777788888887777666666555555444333
No 149
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=30.29 E-value=1.6e+02 Score=19.29 Aligned_cols=60 Identities=15% Similarity=0.262 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHH----HHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHH
Q 040101 16 QRNIAKLNDELYEV----HQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQA 75 (101)
Q Consensus 16 ~dki~~l~~~v~ev----k~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~ 75 (101)
...+.+++..++++ +....+|-+.+|..-..++.+..-.+.+...-.....+..+++...
T Consensus 32 ~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV 95 (132)
T PF10392_consen 32 STPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEV 95 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577777777665 4556678888999888888888877888777777777777777653
No 150
>PF07242 DUF1430: Protein of unknown function (DUF1430); InterPro: IPR006541 These sequences represent a family of integral membrane proteins, most of which are about 650 residues in size and predicted to span the membrane seven times. Nearly half of the members of this family are found in association with a member of the lactococcin 972 family of bacteriocins (IPR006540 from INTERPRO) []. Others may be associated with uncharacterised proteins that may also act as bacteriocins. Although this protein is suggested to be an immunity protein, and the bacteriocin is suggested to be exported by a Sec-dependent process, the role of this protein is unclear.
Probab=30.26 E-value=85 Score=19.65 Aligned_cols=29 Identities=14% Similarity=0.043 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 040101 69 KDLNRQALIRKWAPVAIVLGVVFVVFWLK 97 (101)
Q Consensus 69 ~kl~~~~~w~~~k~~~ii~~iv~~~i~i~ 97 (101)
+++.-...|+++|.+++.-+++.++....
T Consensus 29 krl~G~sf~~~hk~yl~~~~~~~~~~~~~ 57 (100)
T PF07242_consen 29 KRLFGYSFFERHKRYLISQLIVWILGLGI 57 (100)
T ss_pred HHHhCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555578899988887766665554443
No 151
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=30.18 E-value=1.4e+02 Score=23.51 Aligned_cols=39 Identities=10% Similarity=0.231 Sum_probs=32.1
Q ss_pred hHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 040101 2 FIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEV 40 (101)
Q Consensus 2 ~i~~~~~~y~~~~~~dki~~l~~~v~evk~im~~NI~~i 40 (101)
.+.+++..|+...+.+++..+..+++.+++-+.+-|-.-
T Consensus 142 av~~L~~~F~~yksi~~I~~L~~~i~~l~~~L~~qI~~d 180 (383)
T PF04100_consen 142 AVKELLEHFKPYKSIPQIAELSKRIDQLQNELKEQIFED 180 (383)
T ss_pred HHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888899999999999999888877766653
No 152
>PF05803 Chordopox_L2: Chordopoxvirus L2 protein; InterPro: IPR008447 This family consists of several Chordopoxvirus L2 proteins.
Probab=30.13 E-value=1.3e+02 Score=18.99 Aligned_cols=21 Identities=10% Similarity=0.044 Sum_probs=13.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHH
Q 040101 73 RQALIRKWAPVAIVLGVVFVV 93 (101)
Q Consensus 73 ~~~~w~~~k~~~ii~~iv~~~ 93 (101)
-++.+|||+..++++....+.
T Consensus 59 ~Rlv~RN~~ill~l~l~~~i~ 79 (87)
T PF05803_consen 59 IRLVKRNYKILLILALSYAIY 79 (87)
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 346778888777765555543
No 153
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=29.95 E-value=15 Score=23.42 Aligned_cols=24 Identities=21% Similarity=0.133 Sum_probs=14.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhh
Q 040101 77 IRKWAPVAIVLGVVFVVFWLKTKL 100 (101)
Q Consensus 77 w~~~k~~~ii~~iv~~~i~i~~~~ 100 (101)
|.+....+|+.++.++++|+.+-|
T Consensus 34 ws~vv~v~i~~lvaVg~~YL~y~~ 57 (91)
T PF01708_consen 34 WSRVVEVAIFTLVAVGCLYLAYTW 57 (91)
T ss_pred ceeEeeeeehHHHHHHHHHHHHHH
Confidence 455556666666666666665543
No 154
>COG5547 Small integral membrane protein [Function unknown]
Probab=29.88 E-value=74 Score=18.70 Aligned_cols=15 Identities=20% Similarity=0.007 Sum_probs=8.4
Q ss_pred HHHhhHHHHHHHHHH
Q 040101 76 LIRKWAPVAIVLGVV 90 (101)
Q Consensus 76 ~w~~~k~~~ii~~iv 90 (101)
|.+.+|+.++-+.+.
T Consensus 3 flk~fkypIIgglvg 17 (62)
T COG5547 3 FLKKFKYPIIGGLVG 17 (62)
T ss_pred HHHHhccchHHHHHH
Confidence 556666666554433
No 155
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=29.44 E-value=1.9e+02 Score=19.79 Aligned_cols=29 Identities=10% Similarity=0.102 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhHHHHHhcccchhhhhhh
Q 040101 25 ELYEVHQIMTRNVQEVLGVGEKLDQVSEM 53 (101)
Q Consensus 25 ~v~evk~im~~NI~~il~Rge~L~~L~~k 53 (101)
+.+|+-+==.+-+++..+.|.+=|+..+.
T Consensus 21 e~~e~l~~Y~e~f~d~~~~G~sEeeii~~ 49 (181)
T PF08006_consen 21 EREEILEYYEEYFDDAGEEGKSEEEIIAE 49 (181)
T ss_pred HHHHHHHHHHHHHHHhhhCCCCHHHHHHH
Confidence 45555555566677777777665655554
No 156
>COG0776 HimA Bacterial nucleoid DNA-binding protein [DNA replication, recombination, and repair]
Probab=29.29 E-value=82 Score=20.01 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhHHHHHhcccchhh
Q 040101 23 NDELYEVHQIMTRNVQEVLGVGEKLDQ 49 (101)
Q Consensus 23 ~~~v~evk~im~~NI~~il~Rge~L~~ 49 (101)
+.+.+++-+.+-+.|...|.+|++++.
T Consensus 19 k~~a~~~v~~~~~~i~~aL~~G~~V~l 45 (94)
T COG0776 19 KKDAEEAVDAFLEEITEALAKGERVEL 45 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 558889999999999999999998864
No 157
>PRK10753 transcriptional regulator HU subunit alpha; Provisional
Probab=29.27 E-value=82 Score=19.37 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHhcccchh
Q 040101 22 LNDELYEVHQIMTRNVQEVLGVGEKLD 48 (101)
Q Consensus 22 l~~~v~evk~im~~NI~~il~Rge~L~ 48 (101)
-+.+++.+-+.+.+.|.+.|.+|++++
T Consensus 17 s~~~~~~~v~~~~~~i~~~L~~g~~V~ 43 (90)
T PRK10753 17 SKTQAKAALESTLAAITESLKEGDAVQ 43 (90)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence 356788888888899999999998865
No 158
>PRK13530 arsenate reductase; Provisional
Probab=29.20 E-value=73 Score=20.93 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhHHHHHhccc
Q 040101 23 NDELYEVHQIMTRNVQEVLGVGE 45 (101)
Q Consensus 23 ~~~v~evk~im~~NI~~il~Rge 45 (101)
.....++.+.+...++.+++|||
T Consensus 111 ~~~f~~~~~~I~~~v~~l~~~~~ 133 (133)
T PRK13530 111 WSEFQRVRDEIGERIKRFAETGE 133 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 46788999999999999999996
No 159
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=29.07 E-value=2.1e+02 Score=20.23 Aligned_cols=20 Identities=15% Similarity=0.311 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHhHHHH
Q 040101 21 KLNDELYEVHQIMTRNVQEV 40 (101)
Q Consensus 21 ~l~~~v~evk~im~~NI~~i 40 (101)
+++.+++++-.=+.+-+|..
T Consensus 102 QVqqeL~~tf~rL~~~Vd~~ 121 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQT 121 (171)
T ss_dssp --------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56666666665555555443
No 160
>PF12579 DUF3755: Protein of unknown function (DUF3755); InterPro: IPR022228 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. There is a single completely conserved residue N that may be functionally important.
Probab=29.06 E-value=49 Score=17.24 Aligned_cols=19 Identities=21% Similarity=0.448 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 040101 16 QRNIAKLNDELYEVHQIMT 34 (101)
Q Consensus 16 ~dki~~l~~~v~evk~im~ 34 (101)
.|.+..+.+++.++-++|.
T Consensus 16 R~NI~~il~~m~~mpgim~ 34 (35)
T PF12579_consen 16 RDNILAILNDMNDMPGIMS 34 (35)
T ss_pred HHHHHHHHHHHHcchhhhc
Confidence 4556666666666655553
No 161
>PHA02689 ORF051 putative membrane protein; Provisional
Probab=28.99 E-value=70 Score=21.60 Aligned_cols=12 Identities=25% Similarity=0.183 Sum_probs=5.3
Q ss_pred HHhhHHHHHHHH
Q 040101 77 IRKWAPVAIVLG 88 (101)
Q Consensus 77 w~~~k~~~ii~~ 88 (101)
.+.||+..|+.+
T Consensus 25 L~~~kY~~Iv~F 36 (128)
T PHA02689 25 LRAESYLAIAVL 36 (128)
T ss_pred hccchhHHHHHH
Confidence 334454444433
No 162
>PF14899 DUF4492: Domain of unknown function (DUF4492)
Probab=28.91 E-value=1e+02 Score=18.37 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=10.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhh
Q 040101 78 RKWAPVAIVLGVVFVVFWLKTKL 100 (101)
Q Consensus 78 ~~~k~~~ii~~iv~~~i~i~~~~ 100 (101)
-+.-+.+|++=+++.++.+.+|+
T Consensus 18 GktLW~IIliKLfImF~vLK~Ff 40 (64)
T PF14899_consen 18 GKTLWLIILIKLFIMFAVLKLFF 40 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443
No 163
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=28.89 E-value=1.2e+02 Score=19.03 Aligned_cols=29 Identities=10% Similarity=0.258 Sum_probs=22.5
Q ss_pred hhhhhhhhHhhhHhhHHHHHHHHHHHHHH
Q 040101 47 LDQVSEMSSRLTSESRIYADKAKDLNRQA 75 (101)
Q Consensus 47 L~~L~~ks~~L~~~s~~f~k~a~kl~~~~ 75 (101)
|+.|++|.+.|...-..+-.+.++.+...
T Consensus 42 LD~LE~rnD~l~~~L~~LLesnrq~R~e~ 70 (83)
T PF03670_consen 42 LDHLEQRNDHLHAQLQELLESNRQIRLEF 70 (83)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888887777777654
No 164
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=28.70 E-value=1.2e+02 Score=17.45 Aligned_cols=52 Identities=17% Similarity=0.360 Sum_probs=23.3
Q ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhh
Q 040101 3 IQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLT 58 (101)
Q Consensus 3 i~~~~~~y~~~~~~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~ 58 (101)
|.+.......+.....+..+...+...+.+.. .+-.++++++.+.+.++.|.
T Consensus 17 l~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~----ei~~~~~~l~~l~~~~~~L~ 68 (105)
T PF00435_consen 17 LQETEAKLSSSEPGSDLEELEEQLKKHKELQE----EIESRQERLESLNEQAQQLI 68 (105)
T ss_dssp HHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHHHHHHHH
Confidence 34444444332223334444444444433332 33445555666666666663
No 165
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=28.61 E-value=3e+02 Score=21.79 Aligned_cols=19 Identities=0% Similarity=0.258 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 040101 17 RNIAKLNDELYEVHQIMTR 35 (101)
Q Consensus 17 dki~~l~~~v~evk~im~~ 35 (101)
.-++.++.+++++.+-|.+
T Consensus 103 ~t~~~i~~~v~~~~~~l~~ 121 (406)
T PF04906_consen 103 HTLSGIDNLVSDTTEALNS 121 (406)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455556666666554443
No 166
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=27.62 E-value=3.3e+02 Score=22.05 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhccc
Q 040101 19 IAKLNDELYEVHQIMTRNVQEVLGVGE 45 (101)
Q Consensus 19 i~~l~~~v~evk~im~~NI~~il~Rge 45 (101)
+..++...++-...+ +.+-.++..|+
T Consensus 122 ~~~~~~~~~~y~~~~-~~l~~l~~~~~ 147 (554)
T PRK15041 122 AAEIKRNYDIYHNAL-AELIQLLGAGK 147 (554)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHCCC
Confidence 566666666665544 33434444443
No 167
>KOG3498 consensus Preprotein translocase, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.61 E-value=1.4e+02 Score=17.83 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=14.0
Q ss_pred hhhhhhhHhhhHhhHHHHHHHHHHHHHHH
Q 040101 48 DQVSEMSSRLTSESRIYADKAKDLNRQAL 76 (101)
Q Consensus 48 ~~L~~ks~~L~~~s~~f~k~a~kl~~~~~ 76 (101)
+.+.+=+.+..-.|..|.++..|=-|+-.
T Consensus 5 ~~~~~~~~~f~k~s~rf~krC~KPdrKEf 33 (67)
T KOG3498|consen 5 DQLVEPLRDFAKDSIRFVKRCTKPDRKEF 33 (67)
T ss_pred HHhcchHHHHHHHHHHHHHHhcCCcHHHH
Confidence 34444444444445555555555555544
No 168
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=27.21 E-value=1.2e+02 Score=21.16 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHHHHH
Q 040101 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIR 78 (101)
Q Consensus 16 ~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~~w~ 78 (101)
.+++.+++.++.+.+..=.++.+.+.+=...++.+..+.......-.........++.+.-..
T Consensus 73 e~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l 135 (194)
T PF08614_consen 73 EQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDL 135 (194)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999999999999988888887777777777777665443
No 169
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.13 E-value=1.6e+02 Score=18.05 Aligned_cols=51 Identities=18% Similarity=0.179 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHH
Q 040101 15 TQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYA 65 (101)
Q Consensus 15 ~~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~ 65 (101)
..|-|.-++-+++|.++-=..=-+.+-+-.+..+.|+...+.|...-..++
T Consensus 16 AvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQ 66 (79)
T COG3074 16 AIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777778888877764332222233233334455555555554444443
No 170
>PF06238 Borrelia_lipo_2: Borrelia burgdorferi BBR25 lipoprotein; InterPro: IPR009358 This entry consists of a number of lipoproteins conserved in Borrelia species [].
Probab=27.12 E-value=1.9e+02 Score=18.96 Aligned_cols=12 Identities=33% Similarity=0.614 Sum_probs=4.9
Q ss_pred HHHHHHHHHHhH
Q 040101 26 LYEVHQIMTRNV 37 (101)
Q Consensus 26 v~evk~im~~NI 37 (101)
++|++++..-||
T Consensus 61 l~eIq~Ilk~ni 72 (111)
T PF06238_consen 61 LEEIQDILKYNI 72 (111)
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 171
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=26.95 E-value=74 Score=22.26 Aligned_cols=19 Identities=5% Similarity=0.100 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 040101 82 PVAIVLGVVFVVFWLKTKL 100 (101)
Q Consensus 82 ~~~ii~~iv~~~i~i~~~~ 100 (101)
+|+++++..++++|+++..
T Consensus 98 ~~Vl~g~s~l~i~yfvir~ 116 (163)
T PF06679_consen 98 LYVLVGLSALAILYFVIRT 116 (163)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666543
No 172
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=26.95 E-value=2.4e+02 Score=20.07 Aligned_cols=46 Identities=22% Similarity=0.190 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHHHHHh
Q 040101 24 DELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRK 79 (101)
Q Consensus 24 ~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~~w~~ 79 (101)
+-+.+.-..|.+.+.++++||.-.+-+.+. |+.=.+-+++.++|=+
T Consensus 126 ~~vk~L~~~mv~Sv~elV~~g~E~~~l~rg----------l~~~e~~v~~~~~~y~ 171 (174)
T PF04510_consen 126 DLVKELLPKMVKSVKELVERGMEVGFLRRG----------LRDFESFVSRQMNWYK 171 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHH----------HHHHHHHHHHHHHHhh
Confidence 345667777899999999999765555433 3333445666666543
No 173
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=26.93 E-value=93 Score=19.34 Aligned_cols=9 Identities=22% Similarity=0.789 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 040101 89 VVFVVFWLK 97 (101)
Q Consensus 89 iv~~~i~i~ 97 (101)
++++++|.+
T Consensus 17 iiaIvvW~i 25 (81)
T PF00558_consen 17 IIAIVVWTI 25 (81)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444443
No 174
>PF12277 DUF3618: Protein of unknown function (DUF3618); InterPro: IPR022062 This domain family is found in bacteria, and is approximately 50 amino acids in length.
Probab=26.77 E-value=1.2e+02 Score=16.61 Aligned_cols=27 Identities=7% Similarity=0.122 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhccc
Q 040101 19 IAKLNDELYEVHQIMTRNVQEVLGVGE 45 (101)
Q Consensus 19 i~~l~~~v~evk~im~~NI~~il~Rge 45 (101)
...|..+++.++.-|..+++.+-.|=.
T Consensus 5 ~~~ie~dIe~tR~~La~tvd~L~~r~~ 31 (49)
T PF12277_consen 5 PDEIERDIERTRAELAETVDELAARLS 31 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 568899999999999999998877754
No 175
>CHL00031 psbT photosystem II protein T
Probab=26.74 E-value=69 Score=16.59 Aligned_cols=17 Identities=6% Similarity=0.184 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 040101 82 PVAIVLGVVFVVFWLKT 98 (101)
Q Consensus 82 ~~~ii~~iv~~~i~i~~ 98 (101)
+.+++++.+.++++.++
T Consensus 6 Ytfll~~tlgilFFAI~ 22 (33)
T CHL00031 6 YTFLLVSTLGIIFFAIF 22 (33)
T ss_pred HHHHHHHHHHHHHHhhe
Confidence 33444444333333333
No 176
>COG4499 Predicted membrane protein [Function unknown]
Probab=26.74 E-value=59 Score=26.17 Aligned_cols=9 Identities=0% Similarity=0.327 Sum_probs=3.8
Q ss_pred HHHHHHHHh
Q 040101 91 FVVFWLKTK 99 (101)
Q Consensus 91 ~~~i~i~~~ 99 (101)
++++|+.|+
T Consensus 233 l~li~~~Y~ 241 (434)
T COG4499 233 LLLIYFTYY 241 (434)
T ss_pred HHHHHHHHH
Confidence 333444444
No 177
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=26.70 E-value=59 Score=23.96 Aligned_cols=11 Identities=0% Similarity=-0.022 Sum_probs=4.4
Q ss_pred hHHHHHHHHHH
Q 040101 80 WAPVAIVLGVV 90 (101)
Q Consensus 80 ~k~~~ii~~iv 90 (101)
.|+-+++++|+
T Consensus 126 ~K~amLIClII 136 (227)
T PF05399_consen 126 NKMAMLICLII 136 (227)
T ss_pred cchhHHHHHHH
Confidence 34444443333
No 178
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=26.70 E-value=2.3e+02 Score=21.91 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=32.5
Q ss_pred HHHHHHHhCCcHH--HHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhh
Q 040101 3 IQKTKKLYQDTRT--QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLT 58 (101)
Q Consensus 3 i~~~~~~y~~~~~--~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~ 58 (101)
++++...|+.-.. .|+=..|..|++.|+.--++ -+..|..+.++|-.+|+.-.
T Consensus 184 ~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAme---iL~aRqkkAeeLkrltd~A~ 238 (302)
T PF07139_consen 184 IKKIKQTFAELQSCLMDREVALLAEMDKVKAEAME---ILDARQKKAEELKRLTDRAS 238 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 4555556654332 46667788888888876554 45556666666665554433
No 179
>PTZ00436 60S ribosomal protein L19-like protein; Provisional
Probab=26.17 E-value=1.1e+02 Score=24.00 Aligned_cols=70 Identities=11% Similarity=0.202 Sum_probs=41.9
Q ss_pred hHHHHHHHhCCcHHHHH------HHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHH
Q 040101 2 FIQKTKKLYQDTRTQRN------IAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDL 71 (101)
Q Consensus 2 ~i~~~~~~y~~~~~~dk------i~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl 71 (101)
.|.+++++|.|....|+ ..+.+...=.-+..|.+-|++.-.-..+...|.++.+.....+..-+..+++.
T Consensus 101 aLRRlLKklRd~gKIDkh~YR~LYrKAKGn~FKNK~~L~e~I~k~KaE~~R~K~L~dQ~eArR~k~~~~r~~~~~~ 176 (357)
T PTZ00436 101 ILRRLLRKYREEKKIDRHIYRELYVKAKGNVFRNKRNLMEHIHKVKNEKKKERQLAEQLAAKRLKDEQHRHKARKQ 176 (357)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhcCCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 46777888876654444 22334444455566677777666666666667777766666555554444443
No 180
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=26.00 E-value=1.3e+02 Score=16.62 Aligned_cols=24 Identities=21% Similarity=0.570 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Q 040101 17 RNIAKLNDELYEVHQIMTRNVQEV 40 (101)
Q Consensus 17 dki~~l~~~v~evk~im~~NI~~i 40 (101)
..+..+.+-+.|+++.|.+.+.++
T Consensus 8 ~ql~~l~~~l~elk~~l~~Q~kE~ 31 (45)
T PF11598_consen 8 KQLSELNQMLQELKELLRQQIKET 31 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557778888889999998887754
No 181
>TIGR01104 V_PPase vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants), archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase, like H(+)-ATPase, acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants.
Probab=25.98 E-value=2.9e+02 Score=23.84 Aligned_cols=37 Identities=14% Similarity=0.275 Sum_probs=20.4
Q ss_pred HhhhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 040101 55 SRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFVVFW 95 (101)
Q Consensus 55 ~~L~~~s~~f~k~a~kl~~~~~w~~~k~~~ii~~iv~~~i~ 95 (101)
+.|.+-|...+..|+. ..-|.||...+++.++.++++
T Consensus 33 ~~M~~Ia~~I~eGA~a----fL~rqyk~i~~~~vi~~v~l~ 69 (697)
T TIGR01104 33 AKMAEIQQAISEGATA----FLFTEYKYVAVFMVAFAVLIF 69 (697)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555554433 223567777777666655553
No 182
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=25.87 E-value=65 Score=24.75 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Q 040101 16 QRNIAKLNDELYEVHQIMTRNVQE 39 (101)
Q Consensus 16 ~dki~~l~~~v~evk~im~~NI~~ 39 (101)
.+..++++.|+.|.=+.|-.+=..
T Consensus 102 ~e~~~klEKel~e~~~~~fg~e~~ 125 (295)
T TIGR01478 102 AEPMSTIEKELLEKYEEMFGDESH 125 (295)
T ss_pred cchhhHHHHHHHHHHHHHhCCccc
Confidence 344455555555555555444433
No 183
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=25.87 E-value=2.1e+02 Score=19.13 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhHHHHHhc
Q 040101 25 ELYEVHQIMTRNVQEVLGV 43 (101)
Q Consensus 25 ~v~evk~im~~NI~~il~R 43 (101)
+..+-.+-+.+.+.+.++.
T Consensus 171 ~~~~~~~~~~~~~~e~l~g 189 (275)
T PF00664_consen 171 KYQEANSELNSFLSESLSG 189 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred cccccccccccccccchhh
Confidence 3333333333444444433
No 184
>PHA03011 hypothetical protein; Provisional
Probab=25.87 E-value=2e+02 Score=18.86 Aligned_cols=50 Identities=14% Similarity=0.244 Sum_probs=29.5
Q ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHh
Q 040101 5 KTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSR 56 (101)
Q Consensus 5 ~~~~~y~~~~~~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~ 56 (101)
.+.-+||.- .|...-+..+..+...+.++|-+.+.-=...+|.|.+.-.+
T Consensus 68 eL~~qYN~L--~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN 117 (120)
T PHA03011 68 ELIAQYNEL--LDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIAN 117 (120)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhc
Confidence 344455432 34555666777777777777777766655555555544433
No 185
>PF09771 Tmemb_18A: Transmembrane protein 188; InterPro: IPR019168 The function of this family of transmembrane proteins has not, as yet, been determined.
Probab=25.81 E-value=1.6e+02 Score=19.81 Aligned_cols=39 Identities=5% Similarity=-0.112 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q 040101 62 RIYADKAKDLNRQALIRKWAPVAIVLGVVFVVFWLKTKL 100 (101)
Q Consensus 62 ~~f~k~a~kl~~~~~w~~~k~~~ii~~iv~~~i~i~~~~ 100 (101)
+.|.++=..+=..+--...++.++++++.++.++-.+.|
T Consensus 10 kaFErRLtEvI~~l~Pst~RWRiiL~v~svct~v~A~~w 48 (125)
T PF09771_consen 10 KAFERRLTEVINSLQPSTTRWRIILVVVSVCTAVGAWHW 48 (125)
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 567766555554444444566666665555554444433
No 186
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=25.54 E-value=76 Score=19.50 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=21.1
Q ss_pred HHHHHHHHH-HHHHHHHHHHhHHHHHhcc
Q 040101 17 RNIAKLNDE-LYEVHQIMTRNVQEVLGVG 44 (101)
Q Consensus 17 dki~~l~~~-v~evk~im~~NI~~il~Rg 44 (101)
+.+.++.+. =.||.++|++||..+|..-
T Consensus 13 e~~~~l~~~~s~ev~e~m~~~v~~llG~l 41 (86)
T PF05542_consen 13 ERIQQLSEPASPEVLEAMKQHVSGLLGNL 41 (86)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHcCC
Confidence 445555444 4689999999999999876
No 187
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=25.45 E-value=1.5e+02 Score=23.12 Aligned_cols=14 Identities=0% Similarity=0.297 Sum_probs=5.8
Q ss_pred chhhhhhhhHhhhH
Q 040101 46 KLDQVSEMSSRLTS 59 (101)
Q Consensus 46 ~L~~L~~ks~~L~~ 59 (101)
+++.+++..+++.+
T Consensus 152 ris~lEd~~~~i~~ 165 (370)
T PF02994_consen 152 RISELEDRIEEIEQ 165 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 34444444444433
No 188
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=25.42 E-value=1.7e+02 Score=20.47 Aligned_cols=29 Identities=14% Similarity=0.312 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhcc
Q 040101 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVG 44 (101)
Q Consensus 16 ~dki~~l~~~v~evk~im~~NI~~il~Rg 44 (101)
.|-..+.+.+++++++--...|++++..-
T Consensus 141 eD~~k~~~~~iQkltd~~i~~id~~~~~K 169 (176)
T TIGR00496 141 EDEERRLQEEIQKLTDEYIKKIDEILKDK 169 (176)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666667777666666666666544
No 189
>PRK00199 ihfB integration host factor subunit beta; Reviewed
Probab=25.41 E-value=1.1e+02 Score=18.80 Aligned_cols=26 Identities=8% Similarity=0.346 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhHHHHHhcccchh
Q 040101 23 NDELYEVHQIMTRNVQEVLGVGEKLD 48 (101)
Q Consensus 23 ~~~v~evk~im~~NI~~il~Rge~L~ 48 (101)
+.++.++-+.+.+.|.+.|.+|+++.
T Consensus 19 ~~~~~~vv~~~~~~i~~~L~~g~~V~ 44 (94)
T PRK00199 19 AKDVENAVKEILEEMSDALARGDRIE 44 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence 45778888888888899999998765
No 190
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=25.39 E-value=1.4e+02 Score=23.46 Aligned_cols=19 Identities=5% Similarity=-0.052 Sum_probs=10.2
Q ss_pred HHHHhhHHHHHHHHHHHHH
Q 040101 75 ALIRKWAPVAIVLGVVFVV 93 (101)
Q Consensus 75 ~~w~~~k~~~ii~~iv~~~ 93 (101)
..|++.+++++++++++++
T Consensus 35 ~L~r~k~~Il~~~~~~~~~ 53 (377)
T PRK10381 35 VLWKAKKTIIAITFAFACA 53 (377)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566666655555444433
No 191
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=25.35 E-value=1.5e+02 Score=19.82 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhh
Q 040101 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMS 54 (101)
Q Consensus 16 ~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks 54 (101)
.|.++++|..|++.-..|...|. .|+|......+....
T Consensus 2 ~DrlTQLQd~ldqL~~~f~~si~-~l~~~a~~~~~~~~~ 39 (144)
T PF11221_consen 2 ADRLTQLQDCLDQLAEQFCNSIG-YLQRDAPPSPLSPND 39 (144)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHH-HHHHTTGGGG-----
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-hhccCCCCCCCCCCc
Confidence 48999999999999999999987 555655555555433
No 192
>PLN02255 H(+) -translocating inorganic pyrophosphatase
Probab=25.29 E-value=2.4e+02 Score=24.65 Aligned_cols=39 Identities=13% Similarity=0.230 Sum_probs=25.4
Q ss_pred hHhhhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 040101 54 SSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFVVFWL 96 (101)
Q Consensus 54 s~~L~~~s~~f~k~a~kl~~~~~w~~~k~~~ii~~iv~~~i~i 96 (101)
++.|+.-|...+..|+- ..-|.||...+++.++.+++++
T Consensus 70 ~~~m~~Ia~~I~eGA~a----fL~rqyk~i~~~~vv~~~~l~~ 108 (765)
T PLN02255 70 VAKCAEIQNAISEGATS----FLFTEYKYVGIFMVIFAAVIFV 108 (765)
T ss_pred CHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777766643 2335678888777776666543
No 193
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=25.25 E-value=1.3e+02 Score=18.42 Aligned_cols=18 Identities=6% Similarity=0.266 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 040101 16 QRNIAKLNDELYEVHQIM 33 (101)
Q Consensus 16 ~dki~~l~~~v~evk~im 33 (101)
.+|++.++.+|++++..+
T Consensus 17 d~KVdaLq~~V~~l~~~~ 34 (75)
T PF05531_consen 17 DDKVDALQTQVDDLESNL 34 (75)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 478888888887766544
No 194
>PTZ00370 STEVOR; Provisional
Probab=25.13 E-value=68 Score=24.65 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 040101 15 TQRNIAKLNDELYEVHQIMTRNVQE 39 (101)
Q Consensus 15 ~~dki~~l~~~v~evk~im~~NI~~ 39 (101)
+.+..++++.|+.|.=+-|-.+=..
T Consensus 100 d~e~k~klEKel~e~~ee~fg~~~~ 124 (296)
T PTZ00370 100 DAEPMSTLEKELLETYEEMFGDESD 124 (296)
T ss_pred CcchhHHHHHHHHHHHHHHhcCccc
Confidence 3444566666666666555555444
No 195
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=25.05 E-value=66 Score=24.92 Aligned_cols=14 Identities=7% Similarity=0.152 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 040101 85 IVLGVVFVVFWLKT 98 (101)
Q Consensus 85 ii~~iv~~~i~i~~ 98 (101)
++++++++++||++
T Consensus 160 f~ii~l~vla~ivY 173 (318)
T PF06682_consen 160 FWIIFLLVLAFIVY 173 (318)
T ss_pred hhHHHHHHHHHHHH
Confidence 33344444444444
No 196
>PF06459 RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR009460 The release of Ca2+ ions from intracellular stores is a key step in a wide variety of cellular functions. In striated muscle, the release of Ca2+ from the sarcoplasmic reticulum (SR) leads to muscle contraction. Ca2+ release occurs through large, high-conductance Ca2+ release channels, also known as ryanodine receptors (RyRs) because they bind the plant alkaloid ryanodine with high affinity and specificity []. This region covers TM regions 4-6 of the ryanodine receptor 1 family.; GO: 0005219 ryanodine-sensitive calcium-release channel activity, 0006874 cellular calcium ion homeostasis, 0016021 integral to membrane
Probab=24.92 E-value=1.5e+02 Score=22.39 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh
Q 040101 79 KWAPVAIVLGVVFVVFWLKTKL 100 (101)
Q Consensus 79 ~~k~~~ii~~iv~~~i~i~~~~ 100 (101)
|+|+.+.++++++=||++.|.|
T Consensus 172 Nlr~lALflAFaINFILLFYKV 193 (274)
T PF06459_consen 172 NLRFLALFLAFAINFILLFYKV 193 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4577777766666667776654
No 197
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=24.86 E-value=1.6e+02 Score=20.15 Aligned_cols=15 Identities=13% Similarity=0.572 Sum_probs=6.8
Q ss_pred hHHHHHHHHHHHHHH
Q 040101 80 WAPVAIVLGVVFVVF 94 (101)
Q Consensus 80 ~k~~~ii~~iv~~~i 94 (101)
|+...++++++++++
T Consensus 154 yr~LGvl~G~~lvIl 168 (170)
T PF09548_consen 154 YRSLGVLGGLFLVIL 168 (170)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 198
>PHA02902 putative IMV membrane protein; Provisional
Probab=24.80 E-value=1.1e+02 Score=18.42 Aligned_cols=12 Identities=0% Similarity=0.373 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 040101 85 IVLGVVFVVFWL 96 (101)
Q Consensus 85 ii~~iv~~~i~i 96 (101)
++..++|.+++.
T Consensus 11 v~v~Ivclliya 22 (70)
T PHA02902 11 VIVIIFCLLIYA 22 (70)
T ss_pred HHHHHHHHHHHH
Confidence 333344444443
No 199
>PHA03029 hypothetical protein; Provisional
Probab=24.71 E-value=1.8e+02 Score=18.02 Aligned_cols=26 Identities=0% Similarity=0.047 Sum_probs=21.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhh
Q 040101 75 ALIRKWAPVAIVLGVVFVVFWLKTKL 100 (101)
Q Consensus 75 ~~w~~~k~~~ii~~iv~~~i~i~~~~ 100 (101)
.|+-|+-.++.-.++++.+.++..|+
T Consensus 53 ywflnf~fwllp~al~a~fyffsiw~ 78 (92)
T PHA03029 53 YWFLNFLFWLLPFALAAAFYFFSIWF 78 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 68889999998888888887776664
No 200
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=24.70 E-value=1.4e+02 Score=23.26 Aligned_cols=12 Identities=17% Similarity=0.121 Sum_probs=5.4
Q ss_pred HHHHhhHHHHHH
Q 040101 75 ALIRKWAPVAIV 86 (101)
Q Consensus 75 ~~w~~~k~~~ii 86 (101)
..|++.+.++++
T Consensus 9 il~rr~~lil~v 20 (444)
T TIGR03017 9 ILKARYWIVLFT 20 (444)
T ss_pred HHHHHHHHHHHH
Confidence 345554444433
No 201
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=24.67 E-value=2.5e+02 Score=22.52 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHH
Q 040101 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYA 65 (101)
Q Consensus 16 ~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~ 65 (101)
...+.++...++++.....++-...=+-.+.-+.|.+.+++|......|+
T Consensus 465 ~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~a~~l~~~a~~L~~~v~~fk 514 (553)
T PRK15048 465 SRGIDQVALAVSEMDRVTQQNASLVQESAAAAAALEEQASRLTQAVSAFR 514 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 202
>TIGR02611 conserved hypothetical protein TIGR02611. Members of this family are Actinobacterial putative proteins of about 150 amino acids in length with three apparent transmembrane helix and an unusual motif with consensus sequence PGPGW.
Probab=24.61 E-value=2.2e+02 Score=19.01 Aligned_cols=11 Identities=18% Similarity=0.220 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 040101 87 LGVVFVVFWLK 97 (101)
Q Consensus 87 ~~iv~~~i~i~ 97 (101)
+++++.+++..
T Consensus 101 ~~~v~~vl~~~ 111 (121)
T TIGR02611 101 IVVIWAVLAGT 111 (121)
T ss_pred HHHHHHHHHHH
Confidence 33333334433
No 203
>PLN02277 H(+) -translocating inorganic pyrophosphatase
Probab=24.51 E-value=3.2e+02 Score=23.73 Aligned_cols=37 Identities=14% Similarity=0.197 Sum_probs=19.6
Q ss_pred HhhhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 040101 55 SRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFVVFW 95 (101)
Q Consensus 55 ~~L~~~s~~f~k~a~kl~~~~~w~~~k~~~ii~~iv~~~i~ 95 (101)
+.|.+-|...+..|+-- .-|.||...+++.++.++++
T Consensus 25 ~~M~~Ia~~I~eGA~af----L~~qyk~i~~~~vv~~~~l~ 61 (730)
T PLN02277 25 PEMVEISDAIRDGAEGF----FRTQYGTISKMAVVLAFVIL 61 (730)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 44555555554444321 22567777776666655543
No 204
>KOG1510 consensus RNA polymerase II holoenzyme and mediator subcomplex, subunit SURB7/SRB7 [Transcription]
Probab=24.51 E-value=1.7e+02 Score=20.04 Aligned_cols=29 Identities=10% Similarity=0.205 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhcc
Q 040101 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVG 44 (101)
Q Consensus 16 ~dki~~l~~~v~evk~im~~NI~~il~Rg 44 (101)
.|+++++|..|+++.+.+-.-|.-+=..+
T Consensus 2 aDRlTQLQd~vn~~A~qf~naig~Lq~~~ 30 (139)
T KOG1510|consen 2 ADRLTQLQDTVNEMAEQFCNAIGVLQQTH 30 (139)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 38899999999999999999998544433
No 205
>PF12534 DUF3733: Leucine-rich repeat containing protein 8 ; InterPro: IPR021040 This entry represents a conserved domain, approximately 60 amino acids in length, found in a number of eukaryotic protein; mostly as a duplicated N-terminal domain in proteins having a C-terminal leucine-rich repeat domain (PF00560 from PFAM). Each domain contains two completely conserved residues (W and Y) that may be functionally important. Most of the proteins in this entry are annotated as leucine-rich repeat containing protein 8, but beyond that there is little known about their function.
Probab=24.51 E-value=1.5e+02 Score=17.64 Aligned_cols=26 Identities=12% Similarity=0.091 Sum_probs=19.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHh
Q 040101 74 QALIRKWAPVAIVLGVVFVVFWLKTK 99 (101)
Q Consensus 74 ~~~w~~~k~~~ii~~iv~~~i~i~~~ 99 (101)
+.||..+-.|+.++-..++++.=-+|
T Consensus 21 kPWwdvf~~YL~~~mlmi~v~~~~~q 46 (65)
T PF12534_consen 21 KPWWDVFFDYLVLLMLMIFVFGGTFQ 46 (65)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 48999999999887776666544333
No 206
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=24.36 E-value=3.5e+02 Score=21.20 Aligned_cols=34 Identities=15% Similarity=0.071 Sum_probs=20.7
Q ss_pred hhhhhhHhhhHhhH--HHHHHHHHHHHHHHHHhhHH
Q 040101 49 QVSEMSSRLTSESR--IYADKAKDLNRQALIRKWAP 82 (101)
Q Consensus 49 ~L~~ks~~L~~~s~--~f~k~a~kl~~~~~w~~~k~ 82 (101)
+++++...|++.|- ..++.-.+++.-..=...++
T Consensus 316 emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrI 351 (359)
T PF10498_consen 316 EMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRI 351 (359)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 45566667777766 56666677776654334443
No 207
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=23.88 E-value=3e+02 Score=20.30 Aligned_cols=65 Identities=17% Similarity=0.295 Sum_probs=51.9
Q ss_pred HHhCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHHH
Q 040101 8 KLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQAL 76 (101)
Q Consensus 8 ~~y~~~~~~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~~ 76 (101)
..| .|...+.+.++...+++...-..+..+++-.+ |+.-..--.+..+.+..|..--+.+..+.|
T Consensus 166 ~TY-Tpe~v~Al~~Ir~~L~~~~~~~e~~~~~a~~~---L~~Ye~lg~~F~~ivreY~~l~~~ie~k~W 230 (238)
T PF14735_consen 166 DTY-TPETVPALRKIRDHLEEAIEELEQELQKARQR---LESYEGLGPEFEEIVREYTDLQQEIENKRW 230 (238)
T ss_pred ccC-CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcccHhHHHHHHHHHHHHHHHHHHHH
Confidence 346 57788899999999999999999998888776 566666666788888888888888877776
No 208
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=23.65 E-value=1.2e+02 Score=18.71 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHhcccchh
Q 040101 22 LNDELYEVHQIMTRNVQEVLGVGEKLD 48 (101)
Q Consensus 22 l~~~v~evk~im~~NI~~il~Rge~L~ 48 (101)
-+.+++.+-+.+.+-|...|.+|++++
T Consensus 18 s~~~v~~vv~~~~~~i~~~L~~g~~V~ 44 (96)
T TIGR00987 18 SKREAKELVELFFEEIRRALENGEQVK 44 (96)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence 466788888888888899999998765
No 209
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=23.57 E-value=1.7e+02 Score=20.07 Aligned_cols=23 Identities=9% Similarity=0.368 Sum_probs=17.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 040101 13 TRTQRNIAKLNDELYEVHQIMTR 35 (101)
Q Consensus 13 ~~~~dki~~l~~~v~evk~im~~ 35 (101)
.....+..+++.|+.+++..|..
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~ 58 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNA 58 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHHHHHHHHHc
Confidence 34567788888999888887654
No 210
>PF13040 DUF3901: Protein of unknown function (DUF3901)
Probab=23.55 E-value=1.1e+02 Score=16.49 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=20.8
Q ss_pred HHHHHHhHHHHHhcccchhhhhhhhHh
Q 040101 30 HQIMTRNVQEVLGVGEKLDQVSEMSSR 56 (101)
Q Consensus 30 k~im~~NI~~il~Rge~L~~L~~ks~~ 56 (101)
.+.+.+|-..+|...+-++.++++-+.
T Consensus 9 eeLV~eNK~ell~d~~~me~Ieerie~ 35 (40)
T PF13040_consen 9 EELVRENKQELLNDKEAMEKIEERIEE 35 (40)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 456788888888888888888877553
No 211
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=23.24 E-value=37 Score=22.39 Aligned_cols=30 Identities=7% Similarity=0.098 Sum_probs=0.0
Q ss_pred hhhhhhhHhhhHhhHHHHHHHHHHHHHHHH
Q 040101 48 DQVSEMSSRLTSESRIYADKAKDLNRQALI 77 (101)
Q Consensus 48 ~~L~~ks~~L~~~s~~f~k~a~kl~~~~~w 77 (101)
..+.+....+...-...+..+...+++.+|
T Consensus 129 ~~i~~~q~~~~~r~~~~~~~~es~~~~i~~ 158 (183)
T PF01105_consen 129 KEIKDEQKYLREREERHRQLNESTNSRIMW 158 (183)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhheEEh
Confidence 344444444555555555666666666544
No 212
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=23.15 E-value=3.2e+02 Score=20.29 Aligned_cols=35 Identities=6% Similarity=0.117 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhH
Q 040101 25 ELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTS 59 (101)
Q Consensus 25 ~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~ 59 (101)
.-++.+.....+..++-++.+++++..++.++++.
T Consensus 20 ~~~~~~~~~~~~~~~~~e~~~~~~e~~~kaeeaqK 54 (306)
T PF04888_consen 20 KKEQIERASEAQEKKAEEKAEEIEEAQEKAEEAQK 54 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444445555666666666665554433
No 213
>PF08900 DUF1845: Domain of unknown function (DUF1845); InterPro: IPR014996 Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.
Probab=23.14 E-value=2.1e+02 Score=20.69 Aligned_cols=30 Identities=10% Similarity=0.258 Sum_probs=25.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 040101 11 QDTRTQRNIAKLNDELYEVHQIMTRNVQEV 40 (101)
Q Consensus 11 ~~~~~~dki~~l~~~v~evk~im~~NI~~i 40 (101)
.||-...-+.++.++++++...|.+.++.+
T Consensus 56 DdPyAD~~L~~iEe~i~~~~~~l~~~~~~l 85 (217)
T PF08900_consen 56 DDPYADWWLLRIEEKINEARQELQELIARL 85 (217)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467677889999999999999998877665
No 214
>PF06916 DUF1279: Protein of unknown function (DUF1279); InterPro: IPR009688 This entry represents the C terminus (approx. 120 residues) of a number of eukaryotic proteins of unknown function.
Probab=23.05 E-value=1.9e+02 Score=17.77 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=17.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhh
Q 040101 74 QALIRKWAPVAIVLGVVFVVFWLKTKL 100 (101)
Q Consensus 74 ~~~w~~~k~~~ii~~iv~~~i~i~~~~ 100 (101)
+..|++|....+..-+.+-++++..++
T Consensus 4 K~l~k~YG~~~l~vy~~~s~~~~~~~y 30 (91)
T PF06916_consen 4 KQLFKKYGYVALGVYLGLSFISLGSCY 30 (91)
T ss_pred HHHHHHhCHhHHHHHHHHHHHHHHHHH
Confidence 466788877777776666666554443
No 215
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=22.99 E-value=2.9e+02 Score=19.71 Aligned_cols=18 Identities=11% Similarity=0.111 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHhHHH
Q 040101 22 LNDELYEVHQIMTRNVQE 39 (101)
Q Consensus 22 l~~~v~evk~im~~NI~~ 39 (101)
=..+++...+...+-+.+
T Consensus 106 W~~~i~~~~~~i~~ll~~ 123 (204)
T PF00517_consen 106 WEKEISNYTGNIYNLLEE 123 (204)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccHHHHHHHHHH
Confidence 344444444444433333
No 216
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.93 E-value=3.9e+02 Score=21.20 Aligned_cols=20 Identities=10% Similarity=0.200 Sum_probs=9.2
Q ss_pred HHhCCcHHHHHHHHHHHHHH
Q 040101 8 KLYQDTRTQRNIAKLNDELY 27 (101)
Q Consensus 8 ~~y~~~~~~dki~~l~~~v~ 27 (101)
.+..++....-+.++...++
T Consensus 86 ~q~~~~~~~~~l~~i~~~l~ 105 (397)
T COG1459 86 DQAPNPKLKQVLTSILEELE 105 (397)
T ss_pred HhCCCHHHHHHHHHHHHHHH
Confidence 33444444444555544443
No 217
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=22.89 E-value=1.9e+02 Score=17.46 Aligned_cols=16 Identities=13% Similarity=0.090 Sum_probs=6.8
Q ss_pred hhhhhhHhhhHhhHHH
Q 040101 49 QVSEMSSRLTSESRIY 64 (101)
Q Consensus 49 ~L~~ks~~L~~~s~~f 64 (101)
+..++.+.+.......
T Consensus 62 dv~~k~~~v~~~~~~v 77 (90)
T PF06103_consen 62 DVNEKLEKVDPVFEAV 77 (90)
T ss_pred HHHHHHHhHHHHHHHH
Confidence 3444444444433333
No 218
>PF10140 YukC: WXG100 protein secretion system (Wss), protein YukC; InterPro: IPR018778 Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This protein is designated YukC in Bacillus subtilis and EssB is Staphylococcus aureus. ; PDB: 4ANN_A.
Probab=22.61 E-value=44 Score=26.23 Aligned_cols=15 Identities=13% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHHHH
Q 040101 76 LIRKWAPVAIVLGVV 90 (101)
Q Consensus 76 ~w~~~k~~~ii~~iv 90 (101)
.|+.+|+..+..+++
T Consensus 190 ~~k~~K~~~i~l~~l 204 (359)
T PF10140_consen 190 KWKIFKYASIGLSIL 204 (359)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 346666665544443
No 219
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=22.60 E-value=1.3e+02 Score=18.32 Aligned_cols=26 Identities=12% Similarity=0.392 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhHHHHHhcccchh
Q 040101 23 NDELYEVHQIMTRNVQEVLGVGEKLD 48 (101)
Q Consensus 23 ~~~v~evk~im~~NI~~il~Rge~L~ 48 (101)
+.+++++-+.+.+.|...|.+|+++.
T Consensus 19 ~~~v~~vv~~~~~~i~~~L~~g~~V~ 44 (94)
T TIGR00988 19 AKDVEDAVKTMLEHMASALAQGDRIE 44 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence 45677888888888888899998764
No 220
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=22.12 E-value=1.5e+02 Score=18.60 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=15.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHH
Q 040101 73 RQALIRKWAPVAIVLGVVFVV 93 (101)
Q Consensus 73 ~~~~w~~~k~~~ii~~iv~~~ 93 (101)
.+.=|..+...++++++++++
T Consensus 56 gK~~W~~fg~~~vVGvvLlv~ 76 (87)
T PF11190_consen 56 GKKTWGDFGATVVVGVVLLVF 76 (87)
T ss_pred CcccHHHhhhHHHHHHHHHHH
Confidence 445678888888887776655
No 221
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=22.00 E-value=1.6e+02 Score=18.51 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=7.5
Q ss_pred hhHHHHHHHHHHHHH
Q 040101 79 KWAPVAIVLGVVFVV 93 (101)
Q Consensus 79 ~~k~~~ii~~iv~~~ 93 (101)
+.|..+|+..+++++
T Consensus 32 ~lKrlliivvVvVlv 46 (93)
T PF08999_consen 32 NLKRLLIIVVVVVLV 46 (93)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ccceEEEEEEeeehh
Confidence 455555554444433
No 222
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.88 E-value=76 Score=19.54 Aligned_cols=22 Identities=5% Similarity=0.123 Sum_probs=10.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHH
Q 040101 73 RQALIRKWAPVAIVLGVVFVVF 94 (101)
Q Consensus 73 ~~~~w~~~k~~~ii~~iv~~~i 94 (101)
.+..++|..+++.+++.+++++
T Consensus 4 wKvR~kN~~~w~ali~~i~l~v 25 (84)
T PF04531_consen 4 WKVRFKNKAFWVALISAILLLV 25 (84)
T ss_pred hhhcccCHHHHHHHHHHHHHHH
Confidence 3344455555555544444443
No 223
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=21.78 E-value=2.8e+02 Score=19.20 Aligned_cols=46 Identities=24% Similarity=0.382 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhh-HhhhHhhHHHH
Q 040101 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMS-SRLTSESRIYA 65 (101)
Q Consensus 16 ~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks-~~L~~~s~~f~ 65 (101)
..-...++.++++++.-..+.|+ ..++|+....++ ..|..-|..|.
T Consensus 26 R~E~~~l~~EL~evk~~v~~~I~----evD~Le~~er~aR~rL~eVS~~f~ 72 (159)
T PF05384_consen 26 RQEYERLRKELEEVKEEVSEVIE----EVDKLEKRERQARQRLAEVSRNFD 72 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 35577888999999887776665 456666666555 45666666663
No 224
>PF10372 YojJ: Bacterial membrane-spanning protein N-terminus; InterPro: IPR019457 This entry is found at the N terminus of a family of putative membrane-spanning bacterial proteins. These proteins often contain IPR003390 from INTERPRO towards the C terminus. ; PDB: 2FB5_A.
Probab=21.54 E-value=2e+02 Score=17.32 Aligned_cols=22 Identities=9% Similarity=0.172 Sum_probs=16.7
Q ss_pred chhhhhhhhHhhhHhhHHHHHH
Q 040101 46 KLDQVSEMSSRLTSESRIYADK 67 (101)
Q Consensus 46 ~L~~L~~ks~~L~~~s~~f~k~ 67 (101)
.+|++.+.-.++++.|..|+=+
T Consensus 43 e~e~i~~~f~~~q~~AssyYLq 64 (70)
T PF10372_consen 43 EFEEIREKFLDIQTLASSYYLQ 64 (70)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888888888644
No 225
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=21.48 E-value=3.3e+02 Score=20.48 Aligned_cols=48 Identities=13% Similarity=0.157 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHH
Q 040101 17 RNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIY 64 (101)
Q Consensus 17 dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f 64 (101)
+.+..++..|+++..-..+....+-++=+.|..+.+..++|+..+...
T Consensus 13 e~l~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~~~~~~l~~~~~~L 60 (304)
T PF02646_consen 13 EQLEKFEKRLEESFEQRSEEFGSLKEQLKQLSEANGEIQQLSQEASNL 60 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445555555555555544444444443333333333334444444433
No 226
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=21.39 E-value=2.1e+02 Score=19.76 Aligned_cols=13 Identities=15% Similarity=0.552 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 040101 81 APVAIVLGVVFVV 93 (101)
Q Consensus 81 k~~~ii~~iv~~~ 93 (101)
+...+++++++++
T Consensus 155 ~~LGvl~Gl~lvI 167 (170)
T TIGR02833 155 RYLGVLVGLMIVL 167 (170)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 227
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=21.26 E-value=56 Score=18.27 Aligned_cols=18 Identities=28% Similarity=0.569 Sum_probs=7.5
Q ss_pred hhHHHHHHHHH-HHHHHHH
Q 040101 79 KWAPVAIVLGV-VFVVFWL 96 (101)
Q Consensus 79 ~~k~~~ii~~i-v~~~i~i 96 (101)
++++.++++.+ +++++|.
T Consensus 3 k~rwiili~iv~~Cl~lyl 21 (47)
T PRK10299 3 KFRWVVLVVVVLACLLLWA 21 (47)
T ss_pred eeeehHHHHHHHHHHHHHH
Confidence 34444444333 3444443
No 228
>KOG3976 consensus Mitochondrial F1F0-ATP synthase, subunit b/ATP4 [Energy production and conversion]
Probab=21.25 E-value=3.6e+02 Score=20.23 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHH
Q 040101 17 RNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRI 63 (101)
Q Consensus 17 dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~ 63 (101)
.-+.++-+++++.++-=.+-|.+.++.+.+...+..+++.|-+.++.
T Consensus 125 k~~~k~~~~~~~arq~~ik~i~d~id~~~sqq~~~~~~~~lfd~~ke 171 (247)
T KOG3976|consen 125 KLIEKILSQLEEARQAHIKAISDAIDTEKSQQALASKTEYLFDVSKE 171 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHhhhhhhhH
Confidence 44677778888888888888888888888888888888777766553
No 229
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=21.21 E-value=1.2e+02 Score=22.97 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhh
Q 040101 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQ 49 (101)
Q Consensus 16 ~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~ 49 (101)
.++...-..||+.+.+.|.+-+++++++|+.++.
T Consensus 91 ieNFkRs~eEVd~LM~L~~~k~~~~~~~~~~~~~ 124 (271)
T KOG1602|consen 91 IENFKRSPEEVDGLMDLALEKIERLLEQGEKLDK 124 (271)
T ss_pred hhhhCCCHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3445555678999999999999999999877663
No 230
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=21.09 E-value=2.6e+02 Score=18.40 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHhhHHHH
Q 040101 65 ADKAKDLNRQALIRKWAPVA 84 (101)
Q Consensus 65 ~k~a~kl~~~~~w~~~k~~~ 84 (101)
.++-+-+++++.+=+.....
T Consensus 49 ~~el~~L~rR~~li~~ai~~ 68 (130)
T PF11026_consen 49 RRELRILRRRARLIRRAITL 68 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555566666555444333
No 231
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=21.04 E-value=3.3e+02 Score=19.67 Aligned_cols=54 Identities=22% Similarity=0.471 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhcc----cchhhhhhhhHhhhHhhHHHHHHHHHHHHH
Q 040101 20 AKLNDELYEVHQIMTRNVQEVLGVG----EKLDQVSEMSSRLTSESRIYADKAKDLNRQ 74 (101)
Q Consensus 20 ~~l~~~v~evk~im~~NI~~il~Rg----e~L~~L~~ks~~L~~~s~~f~k~a~kl~~~ 74 (101)
+++..++.+.+.-|. .++.+++.+ +-+++|-..+..|.........+++.+.+.
T Consensus 39 a~L~~e~~~L~~q~~-s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE 96 (193)
T PF14662_consen 39 AQLAEEITDLRKQLK-SLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKE 96 (193)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666665 335555554 567777777777777777777777777654
No 232
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.99 E-value=4.1e+02 Score=20.71 Aligned_cols=43 Identities=19% Similarity=0.301 Sum_probs=27.9
Q ss_pred HhCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhh
Q 040101 9 LYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVS 51 (101)
Q Consensus 9 ~y~~~~~~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~ 51 (101)
+|.+|.....+..++.|.....+.+.+-++.+.+=..++=++.
T Consensus 203 ~~e~~~s~e~~Q~~E~En~~l~~~~n~~~devrqie~~lvEI~ 245 (316)
T KOG3894|consen 203 HYEDPLSKEQVQLLETENQRLLNELNELLDEVRQIEKRLVEIS 245 (316)
T ss_pred cCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556665566777777777777777777777666555554443
No 233
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.80 E-value=3.5e+02 Score=19.83 Aligned_cols=30 Identities=10% Similarity=0.151 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhHHHHHhcccchhhhhhhh
Q 040101 25 ELYEVHQIMTRNVQEVLGVGEKLDQVSEMS 54 (101)
Q Consensus 25 ~v~evk~im~~NI~~il~Rge~L~~L~~ks 54 (101)
.++|+-+-+++++.-+-+|.+...++.++|
T Consensus 145 rLed~~~sI~~e~~YLr~REeemr~~nesT 174 (210)
T KOG1691|consen 145 RLEDLVESIHEEMYYLREREEEMRNTNEST 174 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 456666777777777777776666655544
No 234
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=20.80 E-value=4.1e+02 Score=20.61 Aligned_cols=38 Identities=5% Similarity=0.147 Sum_probs=23.3
Q ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHhc
Q 040101 4 QKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGV 43 (101)
Q Consensus 4 ~~~~~~y~~~~~~dki~~l~~~v~evk~im~~NI~~il~R 43 (101)
.++...|.+ +.-++..++.++++++..+.+.+.++...
T Consensus 271 ~~l~~~y~~--~hP~v~~l~~~i~~l~~~l~~e~~~~~~~ 308 (444)
T TIGR03017 271 AELSQRLGP--NHPQYKRAQAEINSLKSQLNAEIKKVTSS 308 (444)
T ss_pred HHHHHHhCC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556732 12346677778888777777776666544
No 235
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=20.35 E-value=1.2e+02 Score=21.04 Aligned_cols=20 Identities=10% Similarity=-0.029 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 040101 80 WAPVAIVLGVVFVVFWLKTK 99 (101)
Q Consensus 80 ~k~~~ii~~iv~~~i~i~~~ 99 (101)
.|.++.+.+.+++.+++++|
T Consensus 119 nklilaisvtvv~~iliii~ 138 (154)
T PF14914_consen 119 NKLILAISVTVVVMILIIIF 138 (154)
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 35555554444445555554
No 236
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=20.14 E-value=2.1e+02 Score=19.80 Aligned_cols=13 Identities=15% Similarity=0.465 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 040101 81 APVAIVLGVVFVV 93 (101)
Q Consensus 81 k~~~ii~~iv~~~ 93 (101)
+...+++++++++
T Consensus 156 ~~LGvl~Gl~lvI 168 (171)
T PRK08307 156 KYLGFLAGLLIVI 168 (171)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
Done!