Query 040101
Match_columns 101
No_of_seqs 102 out of 775
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 07:45:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040101.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040101hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hd7_A Vesicle-associated memb 100.0 6.3E-33 2.2E-37 176.2 11.4 86 15-100 3-88 (91)
2 2kog_A Vesicle-associated memb 100.0 8.7E-32 3E-36 178.2 4.6 87 14-100 30-116 (119)
3 2nps_A VAMP-4, vesicle-associa 99.9 1.7E-28 5.8E-33 150.4 3.2 73 11-83 2-74 (74)
4 1sfc_A VAMP 2, protein (synapt 99.9 1.4E-26 4.7E-31 148.2 7.4 70 14-83 27-96 (96)
5 1l4a_A Synaptobrevin; snare, s 99.9 1.3E-27 4.4E-32 148.5 2.4 71 12-82 10-80 (80)
6 4b93_A Vesicle-associated memb 99.9 2.2E-28 7.6E-33 172.3 -8.2 80 2-81 110-189 (189)
7 2nut_C Vesicle-trafficking pro 99.9 6.6E-27 2.3E-31 165.1 -2.9 78 2-79 119-196 (196)
8 1n7s_A Vesicle-associated memb 99.9 4.1E-24 1.4E-28 127.1 6.7 62 15-76 2-63 (63)
9 3b5n_A Synaptobrevin homolog 1 99.9 7.6E-24 2.6E-28 125.3 7.1 60 17-76 2-61 (61)
10 1gl2_A Endobrevin; membrane pr 99.9 5.7E-23 2E-27 122.9 5.2 63 11-73 3-65 (65)
11 3kyq_A YKT6, synaptobrevin hom 99.8 3.5E-22 1.2E-26 141.9 -3.9 72 2-73 123-194 (199)
12 1urq_A M-tomosyn isoform; tran 99.8 3.9E-19 1.3E-23 105.7 5.8 59 17-75 4-62 (63)
13 3zym_A Phosphatidylinositol-bi 98.5 2.9E-08 9.8E-13 74.3 2.9 34 14-47 277-310 (310)
14 3fie_C Fragment of vesicle-ass 98.5 2.6E-11 8.9E-16 65.1 -11.0 32 14-45 6-37 (38)
15 3hd7_B Syntaxin-1A; membrane p 97.2 0.012 4.2E-07 37.4 11.5 44 16-59 20-63 (109)
16 3hd7_A Vesicle-associated memb 96.4 0.077 2.6E-06 32.6 9.9 80 16-99 11-90 (91)
17 2kog_A Vesicle-associated memb 90.5 0.25 8.6E-06 31.8 3.4 53 16-68 39-91 (119)
18 1t3j_A Mitofusin 1; coiled coi 85.7 3.1 0.00011 25.9 6.0 47 18-64 37-83 (96)
19 1jth_B Syntaxin 1A; coiled-coi 76.5 8.8 0.0003 22.2 6.8 43 17-59 10-52 (77)
20 1n7s_A Vesicle-associated memb 71.5 11 0.00037 21.0 7.1 53 24-76 4-56 (63)
21 3b5n_B Protein SSO1; snare com 68.7 14 0.00047 21.0 7.7 44 17-60 10-53 (69)
22 3b5n_A Synaptobrevin homolog 1 68.7 13 0.00044 20.6 7.0 52 25-76 3-54 (61)
23 1sfc_A VAMP 2, protein (synapt 66.5 19 0.00066 21.9 7.9 54 23-76 29-82 (96)
24 1txp_A HnRNP C, heterogeneous 65.9 4.4 0.00015 19.5 2.0 24 21-48 3-26 (28)
25 2nps_B Syntaxin 13, vesicle-as 63.8 18 0.00061 20.5 7.9 44 16-59 5-48 (71)
26 2ww9_B Protein transport prote 60.1 6.9 0.00023 23.5 2.6 36 50-85 21-56 (80)
27 1urq_A M-tomosyn isoform; tran 60.1 21 0.00071 20.1 6.5 47 18-64 12-58 (63)
28 1n7s_B Syntaxin 1A; neuronal s 59.8 21 0.00072 20.0 6.8 43 17-59 12-54 (68)
29 1gl2_B Syntaxin 7; membrane pr 58.6 22 0.00074 19.8 6.8 45 16-60 8-52 (65)
30 1rh5_B Preprotein translocase 57.7 5 0.00017 23.7 1.6 41 46-86 4-44 (74)
31 3hd7_B Syntaxin-1A; membrane p 56.9 32 0.0011 21.2 11.4 9 30-38 47-55 (109)
32 2wwb_B SEC61gamma, protein tra 56.5 3.7 0.00013 23.9 0.9 40 46-85 3-42 (68)
33 2ygg_A Sodium/hydrogen exchang 55.9 13 0.00046 21.7 3.2 23 23-45 6-28 (70)
34 2ww9_B Protein transport prote 52.7 34 0.0012 20.3 5.0 59 41-99 5-67 (80)
35 1gl2_A Endobrevin; membrane pr 52.0 29 0.001 19.3 6.2 53 23-75 8-60 (65)
36 1nhl_A Synaptosomal-associated 49.1 30 0.001 18.6 5.2 40 21-60 4-43 (54)
37 4e81_A Chaperone protein DNAK; 48.9 32 0.0011 23.7 4.9 23 46-68 192-214 (219)
38 1sfc_B Protein (syntaxin 1A), 48.4 39 0.0013 19.7 7.4 43 17-59 21-63 (83)
39 3h3g_B Parathyroid hormone-rel 47.1 15 0.0005 17.1 2.0 12 69-80 5-16 (24)
40 1dn1_B Syntaxin 1A, syntaxin b 47.0 21 0.0007 25.4 3.8 42 17-58 200-241 (267)
41 3lof_A Heat shock 70 kDa prote 45.9 48 0.0016 20.0 5.8 44 16-65 36-79 (113)
42 2xus_A Breast cancer metastasi 44.0 16 0.00054 19.9 2.1 15 16-30 31-45 (49)
43 1l4a_C S-SNAP25 fusion protein 43.6 50 0.0017 19.6 5.9 47 14-60 24-70 (83)
44 2nps_A VAMP-4, vesicle-associa 43.5 45 0.0015 19.0 4.9 50 26-75 10-59 (74)
45 1aq5_A Matrilin-1, CMP, cartil 40.8 42 0.0014 18.0 3.6 37 11-47 6-42 (47)
46 3b5n_C Protein transport prote 39.9 53 0.0018 18.8 7.8 59 14-72 9-67 (70)
47 1y4m_A HERV-FRD_6P24.1 proviru 38.9 44 0.0015 18.4 3.5 22 16-37 6-27 (53)
48 2oxj_A Hybrid alpha/beta pepti 36.7 42 0.0014 16.7 3.4 26 46-71 2-27 (34)
49 1ud0_A HSC70, 70 kDa heat-shoc 35.9 71 0.0024 19.1 6.3 46 15-66 30-75 (113)
50 2p32_A Heat shock 70 kDa prote 35.6 76 0.0026 19.4 5.6 44 17-66 46-89 (120)
51 1ccd_A Clara cell 17 KD protei 35.0 51 0.0017 19.1 3.6 40 4-43 24-64 (77)
52 1mof_A Moloney murine leukemia 34.7 56 0.0019 18.1 3.5 23 15-37 7-29 (55)
53 4av3_A K(+)-stimulated pyropho 34.2 1E+02 0.0035 25.5 6.3 39 54-96 41-79 (735)
54 3fym_A Putative uncharacterize 33.6 10 0.00035 23.8 0.3 14 77-90 102-115 (130)
55 1utg_A Uteroglobin; steroid bi 33.5 43 0.0015 19.0 3.1 40 4-43 22-62 (70)
56 1l4a_A Synaptobrevin; snare, s 32.3 75 0.0026 18.3 5.5 51 16-66 21-71 (80)
57 4a01_A Proton pyrophosphatase; 32.0 88 0.003 26.0 5.6 38 56-97 73-110 (766)
58 3lcn_C MRNA transport factor G 31.7 47 0.0016 15.8 3.2 23 15-37 4-26 (29)
59 1ykh_B RNA polymerase II holoe 31.1 68 0.0023 20.5 4.0 35 16-51 2-36 (132)
60 2yko_A LINE-1 ORF1P; RNA-bindi 30.6 77 0.0026 22.5 4.5 39 16-54 12-50 (233)
61 1pi7_A VPU protein, U ORF prot 30.1 52 0.0018 16.6 2.6 12 85-96 8-19 (36)
62 3t97_C Nuclear pore glycoprote 28.6 44 0.0015 18.9 2.5 15 16-30 11-25 (64)
63 3arc_T Photosystem II reaction 28.6 59 0.002 16.0 2.8 17 83-99 7-23 (32)
64 3c3f_A Alpha/beta peptide with 28.1 62 0.0021 16.1 3.4 19 47-65 3-21 (34)
65 1n7s_C SNAP-25A; neuronal snar 28.0 93 0.0032 18.0 7.4 47 14-60 20-66 (79)
66 3nmd_A CGMP dependent protein 27.4 96 0.0033 18.0 4.3 44 26-69 21-64 (72)
67 1kd8_B GABH BLL, GCN4 acid bas 27.3 67 0.0023 16.2 3.4 18 48-65 4-21 (36)
68 3vmt_A Monofunctional glycosyl 27.0 28 0.00096 25.2 1.7 30 69-98 25-54 (263)
69 3mp7_B Preprotein translocase 25.4 25 0.00086 19.8 1.0 37 50-86 4-40 (61)
70 2pjw_V Vacuolar protein sortin 25.4 1.2E+02 0.004 18.3 4.1 41 15-55 31-71 (91)
71 1u00_A HSC66, chaperone protei 25.2 1.6E+02 0.0053 20.1 5.3 25 40-65 184-208 (227)
72 2p22_A Suppressor protein STP2 24.2 1.4E+02 0.0047 20.1 4.7 37 15-51 57-93 (174)
73 1utr_A Uteroglobin; clara cell 23.8 52 0.0018 19.8 2.3 40 4-43 43-83 (96)
74 2kfe_A Meucin-24; alpha-helix, 23.6 64 0.0022 15.1 2.1 18 17-34 5-22 (26)
75 3zx6_A HAMP, methyl-accepting 23.5 47 0.0016 24.1 2.4 11 49-59 287-297 (341)
76 2bni_A General control protein 23.2 80 0.0028 15.7 3.2 11 49-59 5-15 (34)
77 3rhi_A DNA-binding protein HU; 22.4 88 0.003 18.3 3.2 26 23-48 21-46 (93)
78 4b9q_A Chaperone protein DNAK; 21.7 1.8E+02 0.006 22.8 5.5 19 46-64 580-598 (605)
79 1owf_B IHF-beta, integration H 20.2 1E+02 0.0036 17.9 3.2 26 23-48 19-44 (94)
80 2l9u_A Receptor tyrosine-prote 20.2 99 0.0034 15.6 3.4 20 80-99 8-27 (40)
81 1p71_A DNA-binding protein HU; 20.2 1E+02 0.0036 17.9 3.2 26 23-48 18-43 (94)
82 1b8z_A Protein (histonelike pr 20.2 1.1E+02 0.0036 17.6 3.2 27 23-49 18-44 (90)
No 1
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=100.00 E-value=6.3e-33 Score=176.16 Aligned_cols=86 Identities=19% Similarity=0.276 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 040101 15 TQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFVVF 94 (101)
Q Consensus 15 ~~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~~w~~~k~~~ii~~iv~~~i 94 (101)
+.|+++++++||+||+++|.+||+++|+|||+||+|+++|++|+++|..|+++|++++|+|||+|+|+++++++++++++
T Consensus 3 ~~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il 82 (91)
T 3hd7_A 3 HMRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIIL 82 (91)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred HHHHhh
Q 040101 95 WLKTKL 100 (101)
Q Consensus 95 ~i~~~~ 100 (101)
++++.+
T Consensus 83 ~ii~~~ 88 (91)
T 3hd7_A 83 IIIIVY 88 (91)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 776544
No 2
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=99.97 E-value=8.7e-32 Score=178.25 Aligned_cols=87 Identities=18% Similarity=0.286 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 040101 14 RTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFVV 93 (101)
Q Consensus 14 ~~~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~~w~~~k~~~ii~~iv~~~ 93 (101)
.+.|++.+++.+|+||+++|.+||+++|+|||+||+|++||++|++.|..|+++|++++++|||+|+|++++++++++++
T Consensus 30 ~~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~iii~~iv~ii 109 (119)
T 2kog_A 30 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAII 109 (119)
T ss_dssp SSCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHhh
Q 040101 94 FWLKTKL 100 (101)
Q Consensus 94 i~i~~~~ 100 (101)
+++++.+
T Consensus 110 i~iIi~~ 116 (119)
T 2kog_A 110 LIIIIVY 116 (119)
T ss_dssp HHHHHHH
T ss_pred HHHhhhh
Confidence 7776543
No 3
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=99.94 E-value=1.7e-28 Score=150.39 Aligned_cols=73 Identities=23% Similarity=0.409 Sum_probs=62.6
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHHHHHhhHHH
Q 040101 11 QDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPV 83 (101)
Q Consensus 11 ~~~~~~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~~w~~~k~~ 83 (101)
++|++.|++++++.+|+||++||.+||+++|+|||+|+.|+++|++|++.|..|+++|++++++|||+++|++
T Consensus 2 ~~~~~~d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~ww~n~K~~ 74 (74)
T 2nps_A 2 SMGPRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKIK 74 (74)
T ss_dssp ----CCSSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4678889999999999999999999999999999999999999999999999999999999999999999864
No 4
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.93 E-value=1.4e-26 Score=148.23 Aligned_cols=70 Identities=21% Similarity=0.340 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHHHHHhhHHH
Q 040101 14 RTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPV 83 (101)
Q Consensus 14 ~~~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~~w~~~k~~ 83 (101)
++.|++.+++.+|+||++||.+||+++|+|||+|+.|+++|++|++.|..|+++|++++++|||+|+|++
T Consensus 27 ~~~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmwwkn~K~~ 96 (96)
T 1sfc_A 27 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMM 96 (96)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3469999999999999999999999999999999999999999999999999999999999999999974
No 5
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.93 E-value=1.3e-27 Score=148.45 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=63.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHHHHHhhHH
Q 040101 12 DTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAP 82 (101)
Q Consensus 12 ~~~~~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~~w~~~k~ 82 (101)
+|.+.|++++++.+|+||++||.+||+++|+|||+|+.|+++|++|++.|..|+++|++++++|||++||+
T Consensus 10 ~~~~~d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk~wwkn~K~ 80 (80)
T 1l4a_A 10 PVQQSKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKFWWKNCKM 80 (80)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHHCC------
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999985
No 6
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=99.92 E-value=2.2e-28 Score=172.33 Aligned_cols=80 Identities=18% Similarity=0.325 Sum_probs=47.0
Q ss_pred hHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHHHHHhhH
Q 040101 2 FIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWA 81 (101)
Q Consensus 2 ~i~~~~~~y~~~~~~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~~w~~~k 81 (101)
+|+++++.|+||++.|++.+++++|+||++||.+||+++|+|||+||.|++||++|++.|..|+++|++++|+|||+|+|
T Consensus 110 ~l~~~~~~y~d~~~~d~l~~~~~~l~ev~~im~~Ni~~vl~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~mwwkn~K 189 (189)
T 4b93_A 110 VLAAQLKHHSENKSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNIK 189 (189)
T ss_dssp HHHHHHHHHHCC-------CCHHHHHTTTTCCEECCCCBCTTSSBCCCCEETTCC-------------------------
T ss_pred HHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999986
No 7
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=99.91 E-value=6.6e-27 Score=165.13 Aligned_cols=78 Identities=45% Similarity=0.650 Sum_probs=22.0
Q ss_pred hHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHHHHHh
Q 040101 2 FIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRK 79 (101)
Q Consensus 2 ~i~~~~~~y~~~~~~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~~w~~ 79 (101)
+|++++++|+||++.|++.+++.+|+||++||.+||+++|+|||+||.|++||++|++.|..|+++|++++|+|||++
T Consensus 119 ~l~~~~~~y~~~~~~d~l~~~~~~l~ev~~im~~ni~~vl~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~~~~~~~k 196 (196)
T 2nut_C 119 FIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRSTYAK 196 (196)
T ss_dssp HHHHHHTTTSCCC-----------------CCEEEHHHHC--------------------------------------
T ss_pred HHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999985
No 8
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=99.90 E-value=4.1e-24 Score=127.12 Aligned_cols=62 Identities=24% Similarity=0.386 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHHH
Q 040101 15 TQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQAL 76 (101)
Q Consensus 15 ~~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~~ 76 (101)
+.|++++++.+|+||++||.+||+++|+|||+|+.|+++|++|++.|..|+++|++++++||
T Consensus 2 ~~d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW 63 (63)
T 1n7s_A 2 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 63 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 46999999999999999999999999999999999999999999999999999999999998
No 9
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.90 E-value=7.6e-24 Score=125.28 Aligned_cols=60 Identities=20% Similarity=0.344 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHHH
Q 040101 17 RNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQAL 76 (101)
Q Consensus 17 dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~~ 76 (101)
|++++++.+|+||++||.+||+++|+|||+|+.|+++|++|++.|..|+++|++++++||
T Consensus 2 d~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW 61 (61)
T 3b5n_A 2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMW 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 789999999999999999999999999999999999999999999999999999999998
No 10
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.87 E-value=5.7e-23 Score=122.92 Aligned_cols=63 Identities=25% Similarity=0.444 Sum_probs=52.8
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHH
Q 040101 11 QDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNR 73 (101)
Q Consensus 11 ~~~~~~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~ 73 (101)
.+|++.|++++++.+|+||++||.+||+++|+|||+|+.|+++|++|++.|..|+++|++++|
T Consensus 3 ~~~~~~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~~l~r 65 (65)
T 1gl2_A 3 HMSAGNDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVAR 65 (65)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 367788999999999999999999999999999999999999999999999999999999986
No 11
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=99.80 E-value=3.5e-22 Score=141.88 Aligned_cols=72 Identities=26% Similarity=0.399 Sum_probs=69.0
Q ss_pred hHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHH
Q 040101 2 FIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNR 73 (101)
Q Consensus 2 ~i~~~~~~y~~~~~~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~ 73 (101)
.+++.+++|+||++.|++++++.||+||++||.+||+++|+|||+||+|++||++|++.|..|+++|+++|+
T Consensus 123 ~l~~~m~~Y~dp~~~d~l~~~q~el~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~k~a~~lns 194 (199)
T 3kyq_A 123 ALDGHLSRYQNPREADPMSKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARKQNS 194 (199)
T ss_dssp THHHHHHHTTSGGGCCCCHHHHHHHHTCCCEEESSGGGTSCTTCCHHHHHHHCSSSCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467889999999999999999999999999999999999999999999999999999999999999999995
No 12
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.77 E-value=3.9e-19 Score=105.65 Aligned_cols=59 Identities=15% Similarity=0.200 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHH
Q 040101 17 RNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQA 75 (101)
Q Consensus 17 dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~ 75 (101)
+++..++.++++|+++|.+||+++++|||+|+.|+++|++|.+.|..|.+.|++|++++
T Consensus 4 ~~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~Ky 62 (63)
T 1urq_A 4 GGIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKY 62 (63)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57999999999999999999999999999999999999999999999999999999864
No 13
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=98.55 E-value=2.9e-08 Score=74.27 Aligned_cols=34 Identities=35% Similarity=0.540 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhcccch
Q 040101 14 RTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKL 47 (101)
Q Consensus 14 ~~~dki~~l~~~v~evk~im~~NI~~il~Rge~L 47 (101)
...|.+.++++||+||++||.+||+++|+|||+|
T Consensus 277 ~p~d~l~~lq~~i~ev~~im~~ni~~vl~rge~l 310 (310)
T 3zym_A 277 GHMDRVRNLQSEVEGVKNIMTQNVERILARGENL 310 (310)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ccchHHHHHHHHHHHHHHHHHHhHHHHHhccCCC
Confidence 3468999999999999999999999999999986
No 14
>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}
Probab=98.48 E-value=2.6e-11 Score=65.06 Aligned_cols=32 Identities=28% Similarity=0.355 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhccc
Q 040101 14 RTQRNIAKLNDELYEVHQIMTRNVQEVLGVGE 45 (101)
Q Consensus 14 ~~~dki~~l~~~v~evk~im~~NI~~il~Rge 45 (101)
+..|++.+++.||+||++||.+||+++|+||+
T Consensus 6 ~~~d~l~~vq~qvdeVk~IM~~NIdkvLeRg~ 37 (38)
T 3fie_C 6 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDC 37 (38)
T ss_dssp CCCCSSCEESCCCCCSCCCCTTTHHHHSCCBC
T ss_pred cchhHHHHHHHHHHHHHHHHHHhHHHHHHcCC
Confidence 34689999999999999999999999999996
No 15
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.23 E-value=0.012 Score=37.38 Aligned_cols=44 Identities=20% Similarity=0.312 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhH
Q 040101 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTS 59 (101)
Q Consensus 16 ~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~ 59 (101)
.+.+.++...+.|+.+++.+=-..+-+.|+.++.++...++-.+
T Consensus 20 ~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~ 63 (109)
T 3hd7_B 20 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 63 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 36689999999999999999999999999999999887665543
No 16
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=96.37 E-value=0.077 Score=32.64 Aligned_cols=80 Identities=9% Similarity=0.104 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 040101 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFVVFW 95 (101)
Q Consensus 16 ~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~~w~~~k~~~ii~~iv~~~i~ 95 (101)
.+.++.++.-+.+--+-+.++-+++=+=.++-++|.+.|......|...++..-=-+-+ -+-+.++++++++++++
T Consensus 11 q~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K----~~iii~~iv~~il~ii~ 86 (91)
T 3hd7_A 11 QAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLK----MMIILGVICAIILIIII 86 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 45677777777777777776666666666677788888888888888876543222222 23445555556666655
Q ss_pred HHHh
Q 040101 96 LKTK 99 (101)
Q Consensus 96 i~~~ 99 (101)
+.|+
T Consensus 87 ~~~~ 90 (91)
T 3hd7_A 87 VYFS 90 (91)
T ss_dssp HTTC
T ss_pred HHHh
Confidence 5543
No 17
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=90.52 E-value=0.25 Score=31.82 Aligned_cols=53 Identities=11% Similarity=0.123 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHH
Q 040101 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKA 68 (101)
Q Consensus 16 ~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a 68 (101)
++.++.++..+.+.-+-+.+.-+++=+=.++-++|.+.|......|...+++.
T Consensus 39 q~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkm 91 (119)
T 2kog_A 39 QAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 91 (119)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777776777777788888888888888776654
No 18
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=85.66 E-value=3.1 Score=25.85 Aligned_cols=47 Identities=11% Similarity=0.176 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHH
Q 040101 18 NIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIY 64 (101)
Q Consensus 18 ki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f 64 (101)
-...+..+|+++++-|.+-|+.+-..-..||.+..++..|.+.|..+
T Consensus 37 tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L 83 (96)
T 1t3j_A 37 TFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQL 83 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 36788999999999999999988888888887777776666655544
No 19
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=76.55 E-value=8.8 Score=22.21 Aligned_cols=43 Identities=21% Similarity=0.310 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhH
Q 040101 17 RNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTS 59 (101)
Q Consensus 17 dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~ 59 (101)
+.+.++...+.|+.+++.+=-..+.+.|+.++.++...+.-..
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 52 (77)
T 1jth_B 10 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 52 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999988776655443
No 20
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=71.51 E-value=11 Score=20.98 Aligned_cols=53 Identities=13% Similarity=0.070 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHHH
Q 040101 24 DELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQAL 76 (101)
Q Consensus 24 ~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~~ 76 (101)
..+..++.-+.+.-+-+.++-+++-+=.++-+.|.+.|......|...++.+-
T Consensus 4 d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~ 56 (63)
T 1n7s_A 4 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAA 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777788877878877777777777778888888888888888877763
No 21
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=68.68 E-value=14 Score=20.96 Aligned_cols=44 Identities=16% Similarity=0.258 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHh
Q 040101 17 RNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSE 60 (101)
Q Consensus 17 dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~ 60 (101)
+.+.++...+.|+.+++.+=-..+.+.|+.++.++...+.-...
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 53 (69)
T 3b5n_B 10 QELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLD 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999998877665543
No 22
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=68.65 E-value=13 Score=20.62 Aligned_cols=52 Identities=15% Similarity=0.095 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHHH
Q 040101 25 ELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQAL 76 (101)
Q Consensus 25 ~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~~ 76 (101)
.+..++.-+.+--+-+.++-+++-+=.++-+.|.+.|......|...++.+-
T Consensus 3 ~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~ 54 (61)
T 3b5n_A 3 RTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGAN 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777666667777777888888888887777663
No 23
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=66.46 E-value=19 Score=21.87 Aligned_cols=54 Identities=15% Similarity=0.092 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHHH
Q 040101 23 NDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQAL 76 (101)
Q Consensus 23 ~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~~ 76 (101)
...+..++.-+.+..+-+.++-+++-+=.++-+.|.+.|......|...++..-
T Consensus 29 ~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~ 82 (96)
T 1sfc_A 29 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAA 82 (96)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999888888888889999999999999999988874
No 24
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=65.90 E-value=4.4 Score=19.53 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhcccchh
Q 040101 21 KLNDELYEVHQIMTRNVQEVLGVGEKLD 48 (101)
Q Consensus 21 ~l~~~v~evk~im~~NI~~il~Rge~L~ 48 (101)
.++.|+..++ .|+|.+|+|=|+++
T Consensus 3 ~IkkELtQIK----~kvDsLLe~Le~~~ 26 (28)
T 1txp_A 3 AIKKELTQIK----QKVDSLLENLEKIE 26 (28)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHSS
T ss_pred HHHHHHHHHH----HHHHHHHHHHHhhh
Confidence 4555565544 57888888766654
No 25
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=63.82 E-value=18 Score=20.54 Aligned_cols=44 Identities=16% Similarity=0.287 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhH
Q 040101 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTS 59 (101)
Q Consensus 16 ~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~ 59 (101)
.+.+.+|...+.|+.+++.+=-..+-+.|+.|+.++...+.-..
T Consensus 5 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 48 (71)
T 2nps_B 5 ETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEV 48 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 36689999999999999999999999999999999887665554
No 26
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=60.15 E-value=6.9 Score=23.47 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=17.2
Q ss_pred hhhhhHhhhHhhHHHHHHHHHHHHHHHHHhhHHHHH
Q 040101 50 VSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAI 85 (101)
Q Consensus 50 L~~ks~~L~~~s~~f~k~a~kl~~~~~w~~~k~~~i 85 (101)
+.+...++-..+..|.+.|+|=.++-+.+-.+...+
T Consensus 21 ~~e~~~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~i 56 (80)
T 2ww9_B 21 LVEAPVEFVREGTQFLAKCKKPDLKEYTKIVKAVGI 56 (80)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 333344444444455555555555555555444433
No 27
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=60.12 E-value=21 Score=20.13 Aligned_cols=47 Identities=9% Similarity=0.111 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHH
Q 040101 18 NIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIY 64 (101)
Q Consensus 18 ki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f 64 (101)
.++.+.+.+.+-.+-+.+.-+++=.=.++-++|.+.|+..+..|..+
T Consensus 12 qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l 58 (63)
T 1urq_A 12 AASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEM 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444455555555555555444
No 28
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=59.77 E-value=21 Score=20.04 Aligned_cols=43 Identities=21% Similarity=0.310 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhH
Q 040101 17 RNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTS 59 (101)
Q Consensus 17 dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~ 59 (101)
+.+.++...+.|+.+++.+=-..+.+.|+.++.++...+.-..
T Consensus 12 ~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 54 (68)
T 1n7s_B 12 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 54 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999999877765554
No 29
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=58.56 E-value=22 Score=19.84 Aligned_cols=45 Identities=11% Similarity=0.257 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHh
Q 040101 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSE 60 (101)
Q Consensus 16 ~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~ 60 (101)
.+.+.++...+.|+.+++.+=-..+-+.|+.++.++...+.-...
T Consensus 8 ~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 52 (65)
T 1gl2_B 8 ESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVH 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366899999999999999999999999999999998877665543
No 30
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=57.70 E-value=5 Score=23.68 Aligned_cols=41 Identities=15% Similarity=0.027 Sum_probs=20.4
Q ss_pred chhhhhhhhHhhhHhhHHHHHHHHHHHHHHHHHhhHHHHHH
Q 040101 46 KLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIV 86 (101)
Q Consensus 46 ~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~~w~~~k~~~ii 86 (101)
+++.+.+...+.-..+..|-+.|+|=.++-..+-.+..++.
T Consensus 4 ~~~~~~e~~~~f~kd~~rvlk~~~KPdr~EF~~iak~~~iG 44 (74)
T 1rh5_B 4 DFNQKIEQLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALG 44 (74)
T ss_dssp --------CCHHHHHHHHHHHSEECCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 34455555555666666677777666666666655544433
No 31
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=56.88 E-value=32 Score=21.19 Aligned_cols=9 Identities=11% Similarity=0.224 Sum_probs=4.4
Q ss_pred HHHHHHhHH
Q 040101 30 HQIMTRNVQ 38 (101)
Q Consensus 30 k~im~~NI~ 38 (101)
++.|.++|+
T Consensus 47 Qge~Id~Ie 55 (109)
T 3hd7_B 47 QGEMIDRIE 55 (109)
T ss_dssp HHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 444455554
No 32
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=56.50 E-value=3.7 Score=23.89 Aligned_cols=40 Identities=18% Similarity=0.190 Sum_probs=25.6
Q ss_pred chhhhhhhhHhhhHhhHHHHHHHHHHHHHHHHHhhHHHHH
Q 040101 46 KLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAI 85 (101)
Q Consensus 46 ~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~~w~~~k~~~i 85 (101)
.++.+.+...+.-..+..|-+.|+|=.++-..+-.+...+
T Consensus 3 ~~~~~~e~~~~f~k~~~r~lk~~~KPdr~Ef~~iak~~~i 42 (68)
T 2wwb_B 3 QVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAI 42 (68)
T ss_dssp SSSSSSTTHHHHHHHHHHHHHHCCCCCTHHHHHHHHHSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4555666666666677777777777777766665554433
No 33
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=55.87 E-value=13 Score=21.65 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhHHHHHhccc
Q 040101 23 NDELYEVHQIMTRNVQEVLGVGE 45 (101)
Q Consensus 23 ~~~v~evk~im~~NI~~il~Rge 45 (101)
.++++++++|+..|+.++=+|.-
T Consensus 6 ~~~~e~ir~IL~~NLykiRqr~~ 28 (70)
T 2ygg_A 6 KDKEEEIRKILRNNLQKTRQRLR 28 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 46799999999999999988853
No 34
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=52.67 E-value=34 Score=20.34 Aligned_cols=59 Identities=10% Similarity=0.175 Sum_probs=24.1
Q ss_pred HhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHH---HHHhhHHHHHHHHHH-HHHHHHHHh
Q 040101 41 LGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQA---LIRKWAPVAIVLGVV-FVVFWLKTK 99 (101)
Q Consensus 41 l~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~---~w~~~k~~~ii~~iv-~~~i~i~~~ 99 (101)
-+.|++.+...+.-+++.+....|.+.++++=+++ =++-|...+-+.++- +++=++.|+
T Consensus 5 ~~k~~~~~~~~d~~~~~~e~~~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~imG~IGfi 67 (80)
T 2ww9_B 5 SEKGEEKKQSNNQVEKLVEAPVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYA 67 (80)
T ss_dssp ----------------CCHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666677777788888888887766543 234454444444443 333333443
No 35
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=51.99 E-value=29 Score=19.34 Aligned_cols=53 Identities=9% Similarity=0.082 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHH
Q 040101 23 NDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQA 75 (101)
Q Consensus 23 ~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~ 75 (101)
...+..++.-+.+-.+-+.++-+++-+=.++-+.|.+.|......|...++.+
T Consensus 8 ~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A 60 (65)
T 1gl2_A 8 NDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTS 60 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888888877777777777888889999988888888765
No 36
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=49.07 E-value=30 Score=18.63 Aligned_cols=40 Identities=10% Similarity=0.157 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHh
Q 040101 21 KLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSE 60 (101)
Q Consensus 21 ~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~ 60 (101)
....-+.|+.++-.+.+..+-+.||+|+...+...+....
T Consensus 4 ~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~ 43 (54)
T 1nhl_A 4 RILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKD 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhH
Confidence 3456678899999999999999999998877776665543
No 37
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=48.92 E-value=32 Score=23.72 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=14.8
Q ss_pred chhhhhhhhHhhhHhhHHHHHHH
Q 040101 46 KLDQVSEMSSRLTSESRIYADKA 68 (101)
Q Consensus 46 ~L~~L~~ks~~L~~~s~~f~k~a 68 (101)
..+.+..+.++|...+..+...+
T Consensus 192 ~~~~i~~~~~~L~~~~~~i~~~~ 214 (219)
T 4e81_A 192 DKAAIEAKMQELAQVSQKLMEIA 214 (219)
T ss_dssp CHHHHHHHHHHHHHHTHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777666665433
No 38
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=48.41 E-value=39 Score=19.69 Aligned_cols=43 Identities=21% Similarity=0.310 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhH
Q 040101 17 RNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTS 59 (101)
Q Consensus 17 dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~ 59 (101)
+.+.++...+.|+.+++.+=-..+-+.|+-++.++...+.-..
T Consensus 21 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 63 (83)
T 1sfc_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999988877665554
No 39
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=47.05 E-value=15 Score=17.07 Aligned_cols=12 Identities=25% Similarity=0.548 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhh
Q 040101 69 KDLNRQALIRKW 80 (101)
Q Consensus 69 ~kl~~~~~w~~~ 80 (101)
..++|+||..+.
T Consensus 5 Q~~rRr~wL~~l 16 (24)
T 3h3g_B 5 QDLRRRFFLHHL 16 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 468899999875
No 40
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=47.05 E-value=21 Score=25.38 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhh
Q 040101 17 RNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLT 58 (101)
Q Consensus 17 dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~ 58 (101)
+.+.+|...+.|+.+++.+=-..+-+.|+-|+.++...+.-.
T Consensus 200 ~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~ 241 (267)
T 1dn1_B 200 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAV 241 (267)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 458888899999999999888889999999999987765543
No 41
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=45.86 E-value=48 Score=20.03 Aligned_cols=44 Identities=16% Similarity=0.107 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHH
Q 040101 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYA 65 (101)
Q Consensus 16 ~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~ 65 (101)
.+...++...++++++-+..| .....+.+..+.++|...+..+.
T Consensus 36 ~eek~~i~~~i~e~~~wL~~~------~~a~~e~i~~k~~eL~~~~~~i~ 79 (113)
T 3lof_A 36 EADKKKVLDKCQEVISWLDAN------TLAEKDEFEHKRKELEQVCNPII 79 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcC------CcCCHHHHHHHHHHHHHHHHHHH
Confidence 455667788888887777654 11246777888888877666553
No 42
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=43.97 E-value=16 Score=19.89 Aligned_cols=15 Identities=27% Similarity=0.339 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHH
Q 040101 16 QRNIAKLNDELYEVH 30 (101)
Q Consensus 16 ~dki~~l~~~v~evk 30 (101)
.+++++++.++++++
T Consensus 31 ~ERl~ql~~~Leel~ 45 (49)
T 2xus_A 31 RERLSQLRLRLEEVG 45 (49)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 366666666666654
No 43
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=43.57 E-value=50 Score=19.59 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHh
Q 040101 14 RTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSE 60 (101)
Q Consensus 14 ~~~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~ 60 (101)
.+.+.......-+++.+.+....+..+-..||+|+......+.+...
T Consensus 24 esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~d 70 (83)
T 1l4a_C 24 DSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQD 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888889999999999999999999999888877776644
No 44
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=43.47 E-value=45 Score=19.01 Aligned_cols=50 Identities=14% Similarity=0.148 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHHHHH
Q 040101 26 LYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQA 75 (101)
Q Consensus 26 v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~~~~ 75 (101)
+..++.-+.+-.+-+.++-+++-+=.++-+.|.+.|......|...++.+
T Consensus 10 l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a 59 (74)
T 2nps_A 10 IKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRS 59 (74)
T ss_dssp SHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555554445555555566666666666555554
No 45
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=40.78 E-value=42 Score=17.98 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=26.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcccch
Q 040101 11 QDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKL 47 (101)
Q Consensus 11 ~~~~~~dki~~l~~~v~evk~im~~NI~~il~Rge~L 47 (101)
.||...+.+-+-|..+.+.-+-+.+.++.+-.|-+.|
T Consensus 6 edpC~CEslv~FQ~~v~~~l~~Lt~kL~~vt~rle~l 42 (47)
T 1aq5_A 6 EDPCECKSIVKFQTKVEELINTLQQKLEAVAKRIEAL 42 (47)
T ss_dssp SCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777788888888888887777777766555544433
No 46
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=39.87 E-value=53 Score=18.81 Aligned_cols=59 Identities=8% Similarity=0.087 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHHHHH
Q 040101 14 RTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLN 72 (101)
Q Consensus 14 ~~~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~kl~ 72 (101)
.+.+.......-.++..++=...+..+-+.||+|+..+..-+......+.=.+..+.++
T Consensus 9 esl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk 67 (70)
T 3b5n_C 9 SSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELK 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566667777788888888999999999999999999888888877776666666555
No 47
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=38.92 E-value=44 Score=18.35 Aligned_cols=22 Identities=5% Similarity=0.324 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 040101 16 QRNIAKLNDELYEVHQIMTRNV 37 (101)
Q Consensus 16 ~dki~~l~~~v~evk~im~~NI 37 (101)
.+.++.++.+++.+.++..+|=
T Consensus 6 ~~sl~~l~~ql~sla~vvlQNR 27 (53)
T 1y4m_A 6 AKALTTMQEQIDSLAAVVLQNR 27 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999998883
No 48
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=36.69 E-value=42 Score=16.74 Aligned_cols=26 Identities=12% Similarity=0.226 Sum_probs=12.1
Q ss_pred chhhhhhhhHhhhHhhHHHHHHHHHH
Q 040101 46 KLDQVSEMSSRLTSESRIYADKAKDL 71 (101)
Q Consensus 46 ~L~~L~~ks~~L~~~s~~f~k~a~kl 71 (101)
+.+.|++|-++|-..-........++
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34445555555554444444443333
No 49
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=35.87 E-value=71 Score=19.10 Aligned_cols=46 Identities=11% Similarity=0.152 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHH
Q 040101 15 TQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYAD 66 (101)
Q Consensus 15 ~~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k 66 (101)
+.+...++...++++++.+..|-+ ...+.+..+.+.|...+..|..
T Consensus 30 ~~~ek~~i~~~i~~l~~~L~~~~~------ad~~~i~~~~~~L~~~~~~i~~ 75 (113)
T 1ud0_A 30 NDEDKQKILDKCNEIISWLDKNQT------AEKEEFEHQQKELEKVCNPIIT 75 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCc------cCHHHHHHHHHHHHHHHHHHHH
Confidence 345567777888887776643210 1356777888888877776643
No 50
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=35.60 E-value=76 Score=19.40 Aligned_cols=44 Identities=11% Similarity=0.149 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHH
Q 040101 17 RNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYAD 66 (101)
Q Consensus 17 dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k 66 (101)
+...+++..++++++.+..| .....+.+..+.++|...+..|..
T Consensus 46 eek~~I~~~i~el~~~L~~~------~~ad~e~ik~k~~eL~~~~~~i~~ 89 (120)
T 2p32_A 46 EDKKKIEDKCDEILKWLDSN------QTAEKEEFEHQQKDLEGLANPIIS 89 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcC------CcCCHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666555321 112567888888888887777643
No 51
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus rattus} SCOP: a.101.1.1
Probab=35.04 E-value=51 Score=19.13 Aligned_cols=40 Identities=13% Similarity=0.068 Sum_probs=30.5
Q ss_pred HHHHHHhCCcH-HHHHHHHHHHHHHHHHHHHHHhHHHHHhc
Q 040101 4 QKTKKLYQDTR-TQRNIAKLNDELYEVHQIMTRNVQEVLGV 43 (101)
Q Consensus 4 ~~~~~~y~~~~-~~dki~~l~~~v~evk~im~~NI~~il~R 43 (101)
+..+++|+.|+ ..+...++++=++....-=+.||.+++++
T Consensus 24 ~~~l~~y~~~~~a~eA~~~lK~C~D~ls~e~r~~i~~~l~k 64 (77)
T 1ccd_A 24 EAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 64 (77)
T ss_dssp HHHHTTTCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34577897654 56888888888888888888888888765
No 52
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=34.70 E-value=56 Score=18.07 Aligned_cols=23 Identities=17% Similarity=0.423 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 040101 15 TQRNIAKLNDELYEVHQIMTRNV 37 (101)
Q Consensus 15 ~~dki~~l~~~v~evk~im~~NI 37 (101)
..+.++.++.+++.+.++..+|=
T Consensus 7 ~~~si~~l~~ql~sla~vvlQNR 29 (55)
T 1mof_A 7 VEKSISNLEKSLTSLSEVVLQNR 29 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778999999999998888873
No 53
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=34.18 E-value=1e+02 Score=25.50 Aligned_cols=39 Identities=15% Similarity=0.156 Sum_probs=19.9
Q ss_pred hHhhhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 040101 54 SSRLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFVVFWL 96 (101)
Q Consensus 54 s~~L~~~s~~f~k~a~kl~~~~~w~~~k~~~ii~~iv~~~i~i 96 (101)
+++|++-|...+..|.- ..-|.||...++++++.+++++
T Consensus 41 ~~~M~eIa~~I~eGA~a----fL~rqyk~i~~~~vv~~~ll~~ 79 (735)
T 4av3_A 41 TERMKEISSYIRSGADS----FLAHETKAIFKVAIVIAILLMI 79 (735)
T ss_dssp CHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444432 1224578777666665555443
No 54
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=33.60 E-value=10 Score=23.80 Aligned_cols=14 Identities=7% Similarity=0.368 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHH
Q 040101 77 IRKWAPVAIVLGVV 90 (101)
Q Consensus 77 w~~~k~~~ii~~iv 90 (101)
++.+.+.+++++++
T Consensus 102 ~~~~~~~~i~~~~~ 115 (130)
T 3fym_A 102 SKEPIQLLVIMGIT 115 (130)
T ss_dssp --------------
T ss_pred hhhHHHHHHHHHHH
Confidence 34444444444433
No 55
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=33.54 E-value=43 Score=19.01 Aligned_cols=40 Identities=10% Similarity=0.128 Sum_probs=29.6
Q ss_pred HHHHHHhCCcH-HHHHHHHHHHHHHHHHHHHHHhHHHHHhc
Q 040101 4 QKTKKLYQDTR-TQRNIAKLNDELYEVHQIMTRNVQEVLGV 43 (101)
Q Consensus 4 ~~~~~~y~~~~-~~dki~~l~~~v~evk~im~~NI~~il~R 43 (101)
...+++|++|+ ..+...++++=++....-=+.||.+++++
T Consensus 22 ~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~k 62 (70)
T 1utg_A 22 ETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKLTEK 62 (70)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34578897654 55778888888887777778888887765
No 56
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=32.25 E-value=75 Score=18.33 Aligned_cols=51 Identities=8% Similarity=0.110 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHH
Q 040101 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYAD 66 (101)
Q Consensus 16 ~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k 66 (101)
.+.+..++..+.+.-+-+.+.-+++=+=.++-+.|...|......|...++
T Consensus 21 q~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~r 71 (80)
T 1l4a_A 21 QAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKR 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666665555555555566666677777777666544
No 57
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton pumping; HET: DMU; 2.35A {Vigna radiata}
Probab=32.04 E-value=88 Score=26.02 Aligned_cols=38 Identities=13% Similarity=0.211 Sum_probs=21.0
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 040101 56 RLTSESRIYADKAKDLNRQALIRKWAPVAIVLGVVFVVFWLK 97 (101)
Q Consensus 56 ~L~~~s~~f~k~a~kl~~~~~w~~~k~~~ii~~iv~~~i~i~ 97 (101)
.+++-|...+..|.- ..-|.||...++++++.+++++.
T Consensus 73 ~m~eIa~aI~eGA~a----fL~rqYk~i~~~~vv~~~~i~~~ 110 (766)
T 4a01_A 73 KCAEIQNAISEGATS----FLFTEYKYVGIFMVAFAILIFLF 110 (766)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444432 22356788888777776665543
No 58
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=31.70 E-value=47 Score=15.84 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 040101 15 TQRNIAKLNDELYEVHQIMTRNV 37 (101)
Q Consensus 15 ~~dki~~l~~~v~evk~im~~NI 37 (101)
+.+++.-++..++|-+.+..++-
T Consensus 4 ~~sKm~lLKKKIEEQr~i~~~~~ 26 (29)
T 3lcn_C 4 TASKMKLLKKKIEEQREILQKTH 26 (29)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhc
Confidence 45889999999999999988763
No 59
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=31.13 E-value=68 Score=20.46 Aligned_cols=35 Identities=6% Similarity=0.171 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhh
Q 040101 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVS 51 (101)
Q Consensus 16 ~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~ 51 (101)
.|.++++|..|++.-..|-..|.- |+|...-..+.
T Consensus 2 aDrlTQLQd~ldqla~~f~nsig~-Lq~~a~p~~~~ 36 (132)
T 1ykh_B 2 TDRMTQLQICLDQMTEQFCATLNY-IDKNHGFERLT 36 (132)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH-HHHSSCCC---
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH-HhcCCCcccCC
Confidence 389999999999999999999974 45544444443
No 60
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=30.61 E-value=77 Score=22.49 Aligned_cols=39 Identities=10% Similarity=0.191 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhh
Q 040101 16 QRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMS 54 (101)
Q Consensus 16 ~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks 54 (101)
.+.++.+...++++.......-..+-...++|.+|.+.+
T Consensus 12 EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~i 50 (233)
T 2yko_A 12 EERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYV 50 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 357788888888877777776666666677777776654
No 61
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=30.10 E-value=52 Score=16.57 Aligned_cols=12 Identities=33% Similarity=0.354 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 040101 85 IVLGVVFVVFWL 96 (101)
Q Consensus 85 ii~~iv~~~i~i 96 (101)
++++++++++.+
T Consensus 8 ivalivalIiaI 19 (36)
T 1pi7_A 8 IVALVVAIIIAI 19 (36)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 62
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=28.64 E-value=44 Score=18.90 Aligned_cols=15 Identities=27% Similarity=0.395 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 040101 16 QRNIAKLNDELYEVH 30 (101)
Q Consensus 16 ~dki~~l~~~v~evk 30 (101)
.++|+++..++..++
T Consensus 11 gekI~~L~~~v~~~e 25 (64)
T 3t97_C 11 GEKITSLHREVEKVK 25 (64)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555444443
No 63
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=28.58 E-value=59 Score=15.99 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 040101 83 VAIVLGVVFVVFWLKTK 99 (101)
Q Consensus 83 ~~ii~~iv~~~i~i~~~ 99 (101)
.+++++.+.++++.++|
T Consensus 7 t~ll~~tlgiiFFAI~F 23 (32)
T 3arc_T 7 VFIFACIIALFFFAIFF 23 (32)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 34444444333444433
No 64
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=28.14 E-value=62 Score=16.09 Aligned_cols=19 Identities=11% Similarity=0.079 Sum_probs=7.9
Q ss_pred hhhhhhhhHhhhHhhHHHH
Q 040101 47 LDQVSEMSSRLTSESRIYA 65 (101)
Q Consensus 47 L~~L~~ks~~L~~~s~~f~ 65 (101)
.+.|++|-++|-..-....
T Consensus 3 MnQLEdKVEeLl~~~~~Le 21 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXE 21 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHH
Confidence 3344444444444333333
No 65
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=27.97 E-value=93 Score=18.02 Aligned_cols=47 Identities=17% Similarity=0.216 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHh
Q 040101 14 RTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSE 60 (101)
Q Consensus 14 ~~~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~ 60 (101)
.+.+.+.....-+.|+.++-.+.+..+-..||+|+...+...+....
T Consensus 20 ~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~ 66 (79)
T 1n7s_C 20 ESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQD 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhH
Confidence 45677888888999999999999999999999999877776665543
No 66
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=27.43 E-value=96 Score=18.01 Aligned_cols=44 Identities=7% Similarity=0.144 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhHHHHHhcccchhhhhhhhHhhhHhhHHHHHHHH
Q 040101 26 LYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAK 69 (101)
Q Consensus 26 v~evk~im~~NI~~il~Rge~L~~L~~ks~~L~~~s~~f~k~a~ 69 (101)
|.+.+..+.+-.+++-++.+.++.|+..-++....-..++..--
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888999999999888888777776666655443
No 67
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=27.28 E-value=67 Score=16.18 Aligned_cols=18 Identities=17% Similarity=0.086 Sum_probs=7.4
Q ss_pred hhhhhhhHhhhHhhHHHH
Q 040101 48 DQVSEMSSRLTSESRIYA 65 (101)
Q Consensus 48 ~~L~~ks~~L~~~s~~f~ 65 (101)
+.|++|-|+|-..-....
T Consensus 4 nQLE~KVEeLl~~~~~Le 21 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLK 21 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHH
Confidence 344444444444333333
No 68
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=26.98 E-value=28 Score=25.16 Aligned_cols=30 Identities=0% Similarity=0.094 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 040101 69 KDLNRQALIRKWAPVAIVLGVVFVVFWLKT 98 (101)
Q Consensus 69 ~kl~~~~~w~~~k~~~ii~~iv~~~i~i~~ 98 (101)
.+--++.|+++.-..++++++++++++..+
T Consensus 25 ~~~~kk~~~~~~~~~~~~~~l~~~~~~~~~ 54 (263)
T 3vmt_A 25 GKPPKKKKSKRILLKILLTILIIIALFIGI 54 (263)
T ss_dssp ----------CCTTHHHHHHHHHHHHHHHH
T ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666665555555555544444433
No 69
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=25.41 E-value=25 Score=19.77 Aligned_cols=37 Identities=19% Similarity=-0.005 Sum_probs=18.6
Q ss_pred hhhhhHhhhHhhHHHHHHHHHHHHHHHHHhhHHHHHH
Q 040101 50 VSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIV 86 (101)
Q Consensus 50 L~~ks~~L~~~s~~f~k~a~kl~~~~~w~~~k~~~ii 86 (101)
+.+...+.-..+..|-+.|+|=.++-..+-.+...+.
T Consensus 4 ~~e~~~~f~kd~~rvlk~~~KPd~~Ef~~iak~~~iG 40 (61)
T 3mp7_B 4 LQERIRHFWKESRRAFLVTKKPNWATYKRAAKITGLG 40 (61)
T ss_dssp ----CTTHHHHHTHHHHHSCCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3444444555556666666666666665555544433
No 70
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=25.37 E-value=1.2e+02 Score=18.30 Aligned_cols=41 Identities=7% Similarity=0.117 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhhhhhH
Q 040101 15 TQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSS 55 (101)
Q Consensus 15 ~~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~~ks~ 55 (101)
...++..+-..+..++--|..++++-.++-+.|-++.+|-.
T Consensus 31 ~d~~LqeLy~kv~~lRPKL~r~l~~~~~K~~~L~~mn~Kls 71 (91)
T 2pjw_V 31 EDSKLQNLAQRVFASKARLNYALNDKAQKYNTLIEMNGKIS 71 (91)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999888876666665543
No 71
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=25.20 E-value=1.6e+02 Score=20.08 Aligned_cols=25 Identities=16% Similarity=0.408 Sum_probs=16.3
Q ss_pred HHhcccchhhhhhhhHhhhHhhHHHH
Q 040101 40 VLGVGEKLDQVSEMSSRLTSESRIYA 65 (101)
Q Consensus 40 il~Rge~L~~L~~ks~~L~~~s~~f~ 65 (101)
.|+ |+..+.+.++.++|...+..+.
T Consensus 184 wl~-~~d~~~~~~~~~~L~~~~~~i~ 208 (227)
T 1u00_A 184 VAQ-GDDVDAIEQAIKNVDKQTQDFA 208 (227)
T ss_dssp HTT-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHh-cCCHHHHHHHHHHHHHHHHHHH
Confidence 444 4456777777777777666654
No 72
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=24.19 E-value=1.4e+02 Score=20.15 Aligned_cols=37 Identities=8% Similarity=0.205 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhcccchhhhh
Q 040101 15 TQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVS 51 (101)
Q Consensus 15 ~~dki~~l~~~v~evk~im~~NI~~il~Rge~L~~L~ 51 (101)
+.+++......+++-+..+..|++.+-++-++++.+.
T Consensus 57 g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~ 93 (174)
T 2p22_A 57 DKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFS 93 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888887777555554433
No 73
>1utr_A Uteroglobin; clara cell 17 kDa protein (CC10), phospholipase A2 inhibitor, clara cell phospholipid-binding protein, progesterone binding; HET: PCB; NMR {Rattus norvegicus} SCOP: a.101.1.1
Probab=23.84 E-value=52 Score=19.82 Aligned_cols=40 Identities=13% Similarity=0.068 Sum_probs=29.4
Q ss_pred HHHHHHhCCcH-HHHHHHHHHHHHHHHHHHHHHhHHHHHhc
Q 040101 4 QKTKKLYQDTR-TQRNIAKLNDELYEVHQIMTRNVQEVLGV 43 (101)
Q Consensus 4 ~~~~~~y~~~~-~~dki~~l~~~v~evk~im~~NI~~il~R 43 (101)
+...++|+.|+ ..+...++++=+++....=+.|+.++++.
T Consensus 43 ~~~L~~y~~~~~a~~A~~~lK~Cvd~ls~e~r~~i~~ll~~ 83 (96)
T 1utr_A 43 EAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 83 (96)
T ss_dssp HHHHGGGCCCHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45577897655 45778888888887777778888877764
No 74
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=23.62 E-value=64 Score=15.10 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 040101 17 RNIAKLNDELYEVHQIMT 34 (101)
Q Consensus 17 dki~~l~~~v~evk~im~ 34 (101)
.-+.+++..+.++++-|.
T Consensus 5 ei~~kiK~kl~~akdK~k 22 (26)
T 2kfe_A 5 EFMSNLKEKLSGVKEKMK 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 446778888888887764
No 75
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=23.53 E-value=47 Score=24.11 Aligned_cols=11 Identities=45% Similarity=0.579 Sum_probs=4.0
Q ss_pred hhhhhhHhhhH
Q 040101 49 QVSEMSSRLTS 59 (101)
Q Consensus 49 ~L~~ks~~L~~ 59 (101)
.|.+.++.|..
T Consensus 287 ~l~~~a~~L~~ 297 (341)
T 3zx6_A 287 ALEEQASRLTE 297 (341)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 76
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=23.22 E-value=80 Score=15.69 Aligned_cols=11 Identities=18% Similarity=0.289 Sum_probs=4.3
Q ss_pred hhhhhhHhhhH
Q 040101 49 QVSEMSSRLTS 59 (101)
Q Consensus 49 ~L~~ks~~L~~ 59 (101)
.|++|-++|-.
T Consensus 5 QLEdKvEeLl~ 15 (34)
T 2bni_A 5 QIEDKLEEILS 15 (34)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444333
No 77
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=22.43 E-value=88 Score=18.27 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhHHHHHhcccchh
Q 040101 23 NDELYEVHQIMTRNVQEVLGVGEKLD 48 (101)
Q Consensus 23 ~~~v~evk~im~~NI~~il~Rge~L~ 48 (101)
+.+++++-+.+.+-|.+.|.+|+++.
T Consensus 21 k~~~~~~v~~~~~~i~~~L~~g~~V~ 46 (93)
T 3rhi_A 21 QKEATVVVQTVVESITNTLAAGEKVQ 46 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 56788888888888999999998764
No 78
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=21.68 E-value=1.8e+02 Score=22.80 Aligned_cols=19 Identities=11% Similarity=0.064 Sum_probs=10.3
Q ss_pred chhhhhhhhHhhhHhhHHH
Q 040101 46 KLDQVSEMSSRLTSESRIY 64 (101)
Q Consensus 46 ~L~~L~~ks~~L~~~s~~f 64 (101)
..+.+.++.++|+..+..+
T Consensus 580 ~~~~~~~~~~~l~~~~~~~ 598 (605)
T 4b9q_A 580 DKAAIEAKMQELAQVSQKL 598 (605)
T ss_dssp CHHHHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555544
No 79
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=20.19 E-value=1e+02 Score=17.86 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhHHHHHhcccchh
Q 040101 23 NDELYEVHQIMTRNVQEVLGVGEKLD 48 (101)
Q Consensus 23 ~~~v~evk~im~~NI~~il~Rge~L~ 48 (101)
+.+++++-+.+.+-|.+.|..|+++.
T Consensus 19 ~~~~~~~l~~~~~~i~~~L~~g~~V~ 44 (94)
T 1owf_B 19 AKTVEDAVKEMLEHMASTLAQGERIA 44 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 45677788888888888889998764
No 80
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=20.17 E-value=99 Score=15.57 Aligned_cols=20 Identities=25% Similarity=-0.021 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 040101 80 WAPVAIVLGVVFVVFWLKTK 99 (101)
Q Consensus 80 ~k~~~ii~~iv~~~i~i~~~ 99 (101)
+....+.+.+++++++=..|
T Consensus 8 malt~i~gl~vif~~lg~tf 27 (40)
T 2l9u_A 8 MALTVIAGLVVIFMMLGGTF 27 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcee
Confidence 34555666666655554333
No 81
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein-DN; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=20.16 E-value=1e+02 Score=17.89 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhHHHHHhcccchh
Q 040101 23 NDELYEVHQIMTRNVQEVLGVGEKLD 48 (101)
Q Consensus 23 ~~~v~evk~im~~NI~~il~Rge~L~ 48 (101)
+.+++++-+.+.+-|.+.|..|+++.
T Consensus 18 ~~~~~~~l~~~~~~i~~~L~~g~~V~ 43 (94)
T 1p71_A 18 KKQADAVLTAALETIIEAVSSGDKVT 43 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 56788888888888889999998764
No 82
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=20.16 E-value=1.1e+02 Score=17.63 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhHHHHHhcccchhh
Q 040101 23 NDELYEVHQIMTRNVQEVLGVGEKLDQ 49 (101)
Q Consensus 23 ~~~v~evk~im~~NI~~il~Rge~L~~ 49 (101)
+.++..+-+.+.+-|.+.|..|+++..
T Consensus 18 ~~~~~~~l~~~~~~i~~~L~~g~~V~l 44 (90)
T 1b8z_A 18 KKDVKLILDTILETITEALAKGEKVQI 44 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 567788888888888899999987654
Done!