BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040102
(308 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|B Chain B, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|C Chain C, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|D Chain D, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
Length = 491
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 128/290 (44%), Gaps = 28/290 (9%)
Query: 35 PPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTH 94
PP P P+IGH+ L PH AL ++S +YG ++ + +GS P +V +T ++ L
Sbjct: 13 PPGPWGWPLIGHMLTLGKNPHLALSRMSQQYGDVLQIRIGSTPVVVLSGLDTIRQALVRQ 72
Query: 95 ETSFCDRPISAAVDYLTYGSADFSFAP-YGPYWKFMKKLCMTQL----LGGQTLNQFIPI 149
F RP ++ G + SF+P GP W ++L L + +
Sbjct: 73 GDDFKGRPDLYTFTLISNGQS-MSFSPDSGPVWAARRRLAQNGLKSFSIASDPASSTSCY 131
Query: 150 RSEEIWRFMQLMLKKAKASEA----VDVGKELIRLTNNVVSRMTMGQICSINDKEADEVR 205
E + + ++++ + A + + ++ NV+ + G+ N +E +
Sbjct: 132 LEEHVSKEAEVLISTLQELMAGPGHFNPYRYVVVSVTNVICAICFGRRYDHNHQELLSLV 191
Query: 206 KLVQETAELTGKFNLQDYI---WFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARK 262
L E+ G N D+I + N L F K++ KF M++++KEH
Sbjct: 192 NLNNNFGEVVGSGNPADFIPILRYLPNPSLNAF----KDLNEKFYSFMQKMVKEHY---- 243
Query: 263 INKETGKDYAPMDLLDMLLDISE----DESSEIKLTRENIKAFILDIFAA 308
+T + D+ D L++ + DE++ ++L+ E I +LD+F A
Sbjct: 244 ---KTFEKGHIRDITDSLIEHCQEKQLDENANVQLSDEKIINIVLDLFGA 290
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between Alpha-
Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1)
Length = 507
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 130/311 (41%), Gaps = 52/311 (16%)
Query: 28 SKTTSSL--PPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPE 85
+K TSS PP P A P+IG+ + H + +L+ RYG + + LGS P +V
Sbjct: 2 AKKTSSKGKPPGPFAWPLIGNAAAVGQAAHLSFARLARRYGDVFQIRLGSCPIVVLNGER 61
Query: 86 TAKEILKTHETSFCDRPISAAVDYLTYGSADFSFAPYGPYWKFMKKLCMT---------- 135
+ L ++F DRP A+ ++ G +F Y +WK ++ +
Sbjct: 62 AIHQALVQQGSAFADRPSFASFRVVS-GGRSMAFGHYSEHWKVQRRAAHSMMRNFFTRQP 120
Query: 136 ---QLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMGQ 192
Q+L G L+ E + L+++ + +D + NV+S + G
Sbjct: 121 RSRQVLEGHVLS--------EARELVALLVRGSADGAFLDPRPLTVVAVANVMSAVCFGC 172
Query: 193 ICSINDKEADEVRKLVQETAELTGKFNLQDYI-WFCKNIDLQGFGKRLKEVRRKFDDM-- 249
S +D E E+ +E G +L D + W LQ F ++ V R+F+ +
Sbjct: 173 RYSHDDPEFRELLSHNEEFGRTVGAGSLVDVMPW------LQYFPNPVRTVFREFEQLNR 226
Query: 250 ------MERILKEHQEARKINKETGKDYAPMDLLDMLLDISEDESS------EIKLTREN 297
+++ L+ + R AP D++D + +E +++ +L EN
Sbjct: 227 NFSNFILDKFLRHCESLR-------PGAAPRDMMDAFILSAEKKAAGDSHGGGARLDLEN 279
Query: 298 IKAFILDIFAA 308
+ A I DIF A
Sbjct: 280 VPATITDIFGA 290
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|B Chain B, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|C Chain C, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|D Chain D, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3SWZ|A Chain A, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|B Chain B, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|C Chain C, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|D Chain D, Human Cytochrome P450 17a1 In Complex With Tok-001
Length = 494
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 127/295 (43%), Gaps = 29/295 (9%)
Query: 29 KTTSSLPPSPMALPIIGHLHLLAPIPH--QALHKLSIRYGPLIHLFLGSVPCIVACSPET 86
KT + P S ++LP++G L L H KL +YGP+ + +G+ ++ +
Sbjct: 4 KTGAKYPKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQL 63
Query: 87 AKEILKTHETSFCDRPISAAVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLL----GGQT 142
AKE+L F RP A +D + +FA G +W+ ++L M G Q
Sbjct: 64 AKEVLIKKGKDFSGRPQMATLDIASNNRKGIAFADSGAHWQLHRRLAMATFALFKDGDQK 123
Query: 143 LNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMGQICSINDKEAD 202
L + I +EI ++ +++D+ + NV+S + D E +
Sbjct: 124 LEKII---CQEISTLCDML--ATHNGQSIDISFPVFVAVTNVISLICFNTSYKNGDPELN 178
Query: 203 EVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARK 262
++ + + K +L D + + K + K V+ + +D++ +IL+ ++E +
Sbjct: 179 VIQNYNEGIIDNLSKDSLVDLVPWLKIFPNKTLEKLKSHVKIR-NDLLNKILENYKEKFR 237
Query: 263 INKETGKDYAPMDLLDMLL---------DISEDESSEIKLTRENIKAFILDIFAA 308
+ T ++LD L+ + D+ SE+ L+ +I I DIF A
Sbjct: 238 SDSIT-------NMLDTLMQAKMNSDNGNAGPDQDSEL-LSDNHILTTIGDIFGA 284
>pdb|2P85|A Chain A, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|B Chain B, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|C Chain C, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|D Chain D, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|E Chain E, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|F Chain F, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|3T3S|A Chain A, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|B Chain B, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|C Chain C, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|D Chain D, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|E Chain E, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|F Chain F, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|G Chain G, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|H Chain H, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|4EJG|A Chain A, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|B Chain B, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|C Chain C, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|D Chain D, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|E Chain E, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|F Chain F, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|G Chain G, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|H Chain H, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJH|A Chain A, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|B Chain B, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|C Chain C, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|D Chain D, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|E Chain E, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|F Chain F, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|G Chain G, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|H Chain H, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJI|A Chain A, Human Cytochrome P450 2a13 In Complex With Two Molecules
Of 4- (Methylnitrosamino)-1-(3-Puridyl)-1-Butanone
Length = 476
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 126/289 (43%), Gaps = 18/289 (6%)
Query: 26 RRSKTTSSLPPSPMALPIIG-HLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSP 84
+++ + LPP P LP IG +L L + +L K+S RYGP+ + LG +V C
Sbjct: 3 KKTSSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGH 62
Query: 85 ETAKEILKTHETSFCDRPISAAVDYL--TYGSADFSFAPYGPYWKFMKKLCMTQLLGGQT 142
+ KE L F R A D+L YG A FS G K +++ + L G
Sbjct: 63 DAVKEALVDQAEEFSGRGEQATFDWLFKGYGVA-FS---NGERAKQLRRFSIATLRGFGV 118
Query: 143 LNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMGQICSINDKEAD 202
+ I R +E F+ L+ + +D L R +NV+S + G DKE
Sbjct: 119 GKRGIEERIQEEAGFLIDALRGTHGAN-IDPTFFLSRTVSNVISSIVFGDRFDYEDKEFL 177
Query: 203 EVRKLVQETAELTGKFNLQDYIWFCKNI-DLQGFGKRLKEVRRKFDDMMERILKEHQEAR 261
+ +++ + + T Q Y F + L G ++ + + +D + + ++ +Q
Sbjct: 178 SLLRMMLGSFQFTATSTGQLYEMFSSVMKHLPGPQQQAFKELQGLEDFIAKKVEHNQRTL 237
Query: 262 KINKETGKDYAPMDLLD-MLLDISEDESS-EIKLTRENIKAFILDIFAA 308
N +P D +D L+ + E+E + + +N+ L++F A
Sbjct: 238 DPN-------SPRDFIDSFLIRMQEEEKNPNTEFYLKNLVMTTLNLFFA 279
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
pdb|1N6B|A Chain A, Microsomal Cytochrome P450 2c5/3lvdh Complex With A
Dimethyl Derivative Of Sulfaphenazole
pdb|1NR6|A Chain A, Microsomal Cytochrome P450 2c53LVDH COMPLEX WITH
DICLOFENAC
Length = 473
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 122/286 (42%), Gaps = 15/286 (5%)
Query: 26 RRSKTTSSLPPSPMALPIIGH-LHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSP 84
+++ + LPP P PIIG+ L + A ++L K S YGP+ ++LG P +V
Sbjct: 3 KKTSSKGKLPPGPTPFPIIGNILQIDAKDISKSLTKFSECYGPVFTVYLGMKPTVVLHGY 62
Query: 85 ETAKEILKTHETSFCDRPISAAVDYLTYG-SADFSFAPYGPYWKFMKKLCMTQLLGGQTL 143
E KE L F R ++ ++ G FS A WK M++ + L
Sbjct: 63 EAVKEALVDLGEEFAGRGSVPILEKVSKGLGIAFSNA---KTWKEMRRFSLMTLRNFGMG 119
Query: 144 NQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMGQICSINDKEADE 203
+ I R +E R + L+K AS D L NV+ + D+E +
Sbjct: 120 KRSIEDRIQEEARCLVEELRKTNAS-PCDPTFILGCAPCNVICSVIFHNRFDYKDEEFLK 178
Query: 204 VRKLVQETAELTGKFNLQDYIWFCKNID-LQGFGKRLKEVRRKFDDMMERILKEHQEARK 262
+ + + E EL G LQ Y F +D G K L + + + +KEHQ+
Sbjct: 179 LMESLHENVELLGTPWLQVYNNFPALLDYFPGIHKTLLKNADYIKNFIMEKVKEHQKLLD 238
Query: 263 INKETGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308
+N P D +D L I ++ + ++ T E++ + D+F A
Sbjct: 239 VNN-------PRDFIDCFL-IKMEQENNLEFTLESLVIAVSDLFGA 276
>pdb|2HI4|A Chain A, Crystal Structure Of Human Microsomal P450 1a2 In Complex
With Alpha-Naphthoflavone
Length = 495
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 117/294 (39%), Gaps = 38/294 (12%)
Query: 35 PPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTH 94
PP P P++GH+ L PH AL ++S RYG ++ + +GS P +V +T ++ L
Sbjct: 18 PPEPWGWPLLGHVLTLGKNPHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQALVRQ 77
Query: 95 ETSFCDRPISAAVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFI----PIR 150
F RP +T G + GP W ++L LN F P
Sbjct: 78 GDDFKGRPDLYTSTLITDGQSLTFSTDSGPVWAARRRLAQN------ALNTFSIASDPAS 131
Query: 151 SEEIWRFMQLMLKKAKA-----------SEAVDVGKELIRLTNNVVSRMTMGQICSINDK 199
S + + + K+AKA D +++ NV+ M GQ +
Sbjct: 132 SSSCY-LEEHVSKEAKALISRLQELMAGPGHFDPYNQVVVSVANVIGAMCFGQHFPESSD 190
Query: 200 EADEVRKLVQETAELTGKFNLQDY---IWFCKNIDLQGFGKRLKEVRRKFDDMMERILKE 256
E + K E E N D+ + + N LQ R K ++F +++ ++E
Sbjct: 191 EMLSLVKNTHEFVETASSGNPLDFFPILRYLPNPALQ----RFKAFNQRFLWFLQKTVQE 246
Query: 257 HQEARKINKETGKDYAPMDLLDMLLDISED--ESSEIKLTRENIKAFILDIFAA 308
H + +K + + D+ L S+ +S + +E I + DIF A
Sbjct: 247 HYQ--DFDKNSVR-----DITGALFKHSKKGPRASGNLIPQEKIVNLVNDIFGA 293
>pdb|3EBS|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3T3Q|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
Length = 476
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 124/288 (43%), Gaps = 16/288 (5%)
Query: 26 RRSKTTSSLPPSPMALPIIG-HLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSP 84
+++ + LPP P LP IG +L L + +L K+S RYGP+ + LG +V C
Sbjct: 3 KKTSSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGH 62
Query: 85 ETAKEILKTHETSFCDRPISAAVDYLTYG-SADFSFAPYGPYWKFMKKLCMTQLLGGQTL 143
+ +E L F R A D++ G FS G K +++ + L
Sbjct: 63 DAVREALVDQAEEFSGRGEQATFDWVFKGYGVVFS---NGERAKQLRRFSIATLRDFGVG 119
Query: 144 NQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMGQICSINDKEADE 203
+ I R +E F+ L+ + +D L R +NV+S + G DKE
Sbjct: 120 KRGIEERIQEEAGFLIDALRGTGGAN-IDPTFFLSRTVSNVISSIVFGDRFDYKDKEFLS 178
Query: 204 VRKLVQETAELTGKFNLQDYIWFCKNID-LQGFGKRLKEVRRKFDDMMERILKEHQEARK 262
+ +++ + + T Q Y F + L G ++ ++ + +D + + ++ +Q
Sbjct: 179 LLRMMLGSFQFTSTSTGQLYEMFSSVMKHLPGPQQQAFQLLQGLEDFIAKKVEHNQRTLD 238
Query: 263 INKETGKDYAPMDLLD-MLLDISEDESS-EIKLTRENIKAFILDIFAA 308
N +P D +D L+ + E+E + + +N+ L++F A
Sbjct: 239 PN-------SPRDFIDSFLIRMQEEEKNPNTEFYLKNLVMTTLNLFFA 279
>pdb|1Z10|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z11|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|2FDU|A Chain A, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|B Chain B, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|C Chain C, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|D Chain D, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|A Chain A, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|B Chain B, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|C Chain C, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|D Chain D, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDY|A Chain A, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|B Chain B, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|C Chain C, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|D Chain D, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|3T3R|A Chain A, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|B Chain B, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|C Chain C, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|D Chain D, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|4EJJ|A Chain A, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|B Chain B, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|C Chain C, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|D Chain D, Human Cytochrome P450 2a6 In Complex With Nicotine
Length = 476
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 114/268 (42%), Gaps = 15/268 (5%)
Query: 26 RRSKTTSSLPPSPMALPIIG-HLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSP 84
+++ + LPP P LP IG +L L + +L K+S RYGP+ + LG +V C
Sbjct: 3 KKTSSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGH 62
Query: 85 ETAKEILKTHETSFCDRPISAAVDYLTYG-SADFSFAPYGPYWKFMKKLCMTQLLGGQTL 143
+ +E L F R A D++ G FS G K +++ + L
Sbjct: 63 DAVREALVDQAEEFSGRGEQATFDWVFKGYGVVFS---NGERAKQLRRFSIATLRDFGVG 119
Query: 144 NQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMGQICSINDKEADE 203
+ I R +E F+ L+ + +D L R +NV+S + G DKE
Sbjct: 120 KRGIEERIQEEAGFLIDALRGTGGAN-IDPTFFLSRTVSNVISSIVFGDRFDYKDKEFLS 178
Query: 204 VRKLVQETAELTGKFNLQDYIWFCKNID-LQGFGKRLKEVRRKFDDMMERILKEHQEARK 262
+ +++ + T Q Y F + L G ++ ++ + +D + + ++ +Q
Sbjct: 179 LLRMMLGIFQFTSTSTGQLYEMFSSVMKHLPGPQQQAFQLLQGLEDFIAKKVEHNQRTLD 238
Query: 263 INKETGKDYAPMDLLD-MLLDISEDESS 289
N +P D +D L+ + E+E +
Sbjct: 239 PN-------SPRDFIDSFLIRMQEEEKN 259
>pdb|2PG5|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297q
Length = 476
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 114/268 (42%), Gaps = 15/268 (5%)
Query: 26 RRSKTTSSLPPSPMALPIIG-HLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSP 84
+++ + LPP P LP IG +L L + +L K+S RYGP+ + LG +V C
Sbjct: 3 KKTSSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGH 62
Query: 85 ETAKEILKTHETSFCDRPISAAVDYLTYG-SADFSFAPYGPYWKFMKKLCMTQLLGGQTL 143
+ +E L F R A D++ G FS G K +++ + L
Sbjct: 63 DAVREALVDQAEEFSGRGEQATFDWVFKGYGVVFS---NGERAKQLRRFSIATLRDFGVG 119
Query: 144 NQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMGQICSINDKEADE 203
+ I R +E F+ L+ + +D L R +NV+S + G DKE
Sbjct: 120 KRGIEERIQEEAGFLIDALRGTGGAN-IDPTFFLSRTVSNVISSIVFGDRFDYKDKEFLS 178
Query: 204 VRKLVQETAELTGKFNLQDYIWFCKNID-LQGFGKRLKEVRRKFDDMMERILKEHQEARK 262
+ +++ + T Q Y F + L G ++ ++ + +D + + ++ +Q
Sbjct: 179 LLRMMLGIFQFTSTSTGQLYEMFSSVMKHLPGPQQQAFQLLQGLEDFIAKKVEHNQRTLD 238
Query: 263 INKETGKDYAPMDLLD-MLLDISEDESS 289
N +P D +D L+ + E+E +
Sbjct: 239 PN-------SPRDFIDSFLIRMQEEEKN 259
>pdb|2PG7|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
Length = 476
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 114/268 (42%), Gaps = 15/268 (5%)
Query: 26 RRSKTTSSLPPSPMALPIIG-HLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSP 84
+++ + LPP P LP IG +L L + +L K+S RYGP+ + LG +V C
Sbjct: 3 KKTSSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGH 62
Query: 85 ETAKEILKTHETSFCDRPISAAVDYLTYG-SADFSFAPYGPYWKFMKKLCMTQLLGGQTL 143
+ +E L F R A D++ G FS G K +++ + L
Sbjct: 63 DAVREALVDQAEEFSGRGEQATFDWVFKGYGVVFS---NGERAKQLRRFSIATLRDFGVG 119
Query: 144 NQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMGQICSINDKEADE 203
+ I R +E F+ L+ + +D L R +NV+S + G DKE
Sbjct: 120 KRGIEERIQEEAGFLIDALRGTGGAN-IDPTFFLSRTVSNVISSIVFGDRFDYKDKEFLS 178
Query: 204 VRKLVQETAELTGKFNLQDYIWFCKNID-LQGFGKRLKEVRRKFDDMMERILKEHQEARK 262
+ +++ + T Q Y F + L G ++ ++ + +D + + ++ +Q
Sbjct: 179 LLRMMLGIFQFTSTSTGQLYEMFSSVMKHLPGPQQQAFQLLQGLEDFIAKKVEHNQRTLD 238
Query: 263 INKETGKDYAPMDLLD-MLLDISEDESS 289
N +P D +D L+ + E+E +
Sbjct: 239 PN-------SPRDFIDSFLIRMQEEEKN 259
>pdb|2PG6|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
Length = 476
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 113/268 (42%), Gaps = 15/268 (5%)
Query: 26 RRSKTTSSLPPSPMALPIIG-HLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSP 84
+++ + LPP P LP IG +L L + +L K+S RYGP+ + LG +V C
Sbjct: 3 KKTSSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGH 62
Query: 85 ETAKEILKTHETSFCDRPISAAVDYLTYG-SADFSFAPYGPYWKFMKKLCMTQLLGGQTL 143
+ +E L F R A D++ G FS G K +++ + L
Sbjct: 63 DAVREALVDQAEEFSGRGEQATFDWVFKGYGVVFS---NGERAKQLRRFSIATLRDFGVG 119
Query: 144 NQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMGQICSINDKEADE 203
+ I R +E F+ L+ + +D L R +NV+S + G DKE
Sbjct: 120 KRGIEERIQEEAGFLIDALRGTGGAN-IDPTFFLSRTVSNVISSIVFGDRFDYKDKEFLS 178
Query: 204 VRKLVQETAELTGKFNLQDYIWFCKNID-LQGFGKRLKEVRRKFDDMMERILKEHQEARK 262
+ +++ + T Q Y F + L G ++ + + +D + + ++ +Q
Sbjct: 179 LLRMMLGIFQFTSTSTGQLYEMFSSVMKHLPGPQQQAFQCLQGLEDFIAKKVEHNQRTLD 238
Query: 263 INKETGKDYAPMDLLD-MLLDISEDESS 289
N +P D +D L+ + E+E +
Sbjct: 239 PN-------SPRDFIDSFLIRMQEEEKN 259
>pdb|3QZ1|A Chain A, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|B Chain B, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|C Chain C, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|D Chain D, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
Length = 496
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 94/220 (42%), Gaps = 9/220 (4%)
Query: 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRP 102
+ G LHLL P L L+ + GP+ L LG +V S T +E + F RP
Sbjct: 34 VPGFLHLLQPNLPIHLLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIRKWVDFAGRP 93
Query: 103 ISAAVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLML 162
+ ++ D S Y WK KKL + LL G T + P + F + M
Sbjct: 94 QIPSYKLVSQRCQDISLGDYSLLWKAHKKLTRSALLLG-TRSSMEPWVDQLTQEFCERM- 151
Query: 163 KKAKASEAVDVGKELIRLTNNVVSRMTMGQICSINDKEADEVRKLVQETAELTGKFNLQ- 221
+ +A V + KE LT +++ +T G + D VQ+ + +++Q
Sbjct: 152 -RVQAGAPVTIQKEFSLLTCSIICYLTFG---NKEDTLVHAFHDCVQDLMKTWDHWSIQI 207
Query: 222 -DYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEA 260
D + F + G RLK+ D M+E+ L+ H+E+
Sbjct: 208 LDMVPFLRFFPNPGLW-RLKQAIENRDHMVEKQLRRHKES 246
>pdb|3E4E|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E4E|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E6I|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3E6I|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3GPH|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3GPH|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3KOH|A Chain A, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3KOH|B Chain B, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3LC4|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3LC4|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3T3Z|A Chain A, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|B Chain B, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|C Chain C, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|D Chain D, Human Cytochrome P450 2e1 In Complex With Pilocarpine
Length = 476
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 124/289 (42%), Gaps = 19/289 (6%)
Query: 26 RRSKTTSSLPPSPMALPIIGHLHL--LAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACS 83
+++ + LPP P LPIIG+L L IP ++ +L+ R+GP+ L++GS +V
Sbjct: 3 KKTSSKGKLPPGPFPLPIIGNLFQLELKNIP-KSFTRLAQRFGPVFTLYVGSQRMVVMHG 61
Query: 84 PETAKEILKTHETSFCDRPISAAVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTL 143
+ KE L ++ F R A F+ GP WK +++ +T L
Sbjct: 62 YKAVKEALLDYKDEFSGRGDLPAFHAHRDRGIIFN---NGPTWKDIRRFSLTTLRNYGMG 118
Query: 144 NQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMGQICSINDKEADE 203
Q R + F+ L+K + + D + NV++ + + ND++
Sbjct: 119 KQGNESRIQREAHFLLEALRKTQG-QPFDPTFLIGCAPCNVIADILFRKHFDYNDEKFLR 177
Query: 204 VRKLVQETAELTGKFNLQDYIWFCKNID-LQGFGKR-LKEVRRKFDDMMERILKEHQEAR 261
+ L E L LQ Y F + L G ++ +K V + + ER+ KEH ++
Sbjct: 178 LMYLFNENFHLLSTPWLQLYNNFPSFLHYLPGSHRKVIKNVAEVKEYVSERV-KEHHQSL 236
Query: 262 KINKETGKDYAPMDLLDMLLDISEDE--SSEIKLTRENIKAFILDIFAA 308
N P DL D LL E E S+E T + I + D+F A
Sbjct: 237 DPN-------CPRDLTDCLLVEMEKEKHSAERLYTMDGITVTVADLFFA 278
>pdb|1PQ2|A Chain A, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|1PQ2|B Chain B, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|2NNH|A Chain A, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNH|B Chain B, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNI|A Chain A, Cyp2c8dh Complexed With Montelukast
pdb|2NNJ|A Chain A, Cyp2c8dh Complexed With Felodipine
pdb|2VN0|A Chain A, Cyp2c8dh Complexed With Troglitazone
Length = 476
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 111/292 (38%), Gaps = 24/292 (8%)
Query: 26 RRSKTTSSLPPSPMALPIIGH-LHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSP 84
+++ + LPP P LPIIG+ L + ++ S YGP+ ++ G P +V
Sbjct: 3 KKTSSKGKLPPGPTPLPIIGNMLQIDVKDICKSFTNFSKVYGPVFTVYFGMNPIVVFHGY 62
Query: 85 ETAKEILKTHETSFCDRPISAAVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLN 144
E KE L + F R S +T G S G WK +++ +T L
Sbjct: 63 EAVKEALIDNGEEFSGRGNSPISQRITKGLGIIS--SNGKRWKEIRRFSLTTLRNFGMGK 120
Query: 145 QFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMGQICSINDKEADEV 204
+ I R +E + L+K KAS D L NV+ + + D+ +
Sbjct: 121 RSIEDRVQEEAHCLVEELRKTKAS-PCDPTFILGCAPCNVICSVVFQKRFDYKDQNFLTL 179
Query: 205 RKLVQETAELTGKFNLQDYIWFCKNIDL------QGFGKRLKEVRRKFDDMMERILKEHQ 258
K E + +I C N L K LK V + E++ KEHQ
Sbjct: 180 MKRFNENFRILN----SPWIQVCNNFPLLIDCFPGTHNKVLKNVALTRSYIREKV-KEHQ 234
Query: 259 EARKINKETGKDYAPMDLLDMLLDISEDESSEIK--LTRENIKAFILDIFAA 308
+ +N P D +D L E E K EN+ + D+F A
Sbjct: 235 ASLDVNN-------PRDFIDCFLIKMEQEKDNQKSEFNIENLVGTVADLFVA 279
>pdb|1OG2|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG2|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
Length = 475
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 121/289 (41%), Gaps = 20/289 (6%)
Query: 28 SKTTSS--LPPSPMALPIIGH-LHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSP 84
+K TSS PP P LP+IG+ L + ++L LS YGP+ L+ G P +V
Sbjct: 2 AKKTSSKGRPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGY 61
Query: 85 ETAKEILKTHETSFCDRPISAAVDYLTYG-SADFSFAPYGPYWKFMKKLCMTQLLGGQTL 143
E KE L F R I + G FS G WK +++ + L
Sbjct: 62 EAVKEALIDLGEEFSGRGIFPLAERANRGFGIVFS---NGKKWKEIRRFSLMTLRNFGMG 118
Query: 144 NQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMGQICSINDKEADE 203
+ I R +E R + L+K KAS D L NV+ + + D++
Sbjct: 119 KRSIEDRVQEEARCLVEELRKTKAS-PCDPTFILGCAPCNVICSIIFHKRFDYKDQQFLN 177
Query: 204 VRKLVQETAELTGKFNLQDYIWFCKNIDL--QGFGKRLKEVRRKFDDMMERILKEHQEAR 261
+ + + E E+ +Q Y F +D K LK V ++E++ KEHQE+
Sbjct: 178 LMEKLNENIEILSSPWIQVYNNFPALLDYFPGTHNKLLKNVAFMKSYILEKV-KEHQESM 236
Query: 262 KINKETGKDYAPMDLLDMLLDISEDE--SSEIKLTRENIKAFILDIFAA 308
+N P D +D L E E + + T E+++ +D+F A
Sbjct: 237 DMNN-------PQDFIDCFLMKMEKEKHNQPSEFTIESLENTAVDLFGA 278
>pdb|1R9O|A Chain A, Crystal Structure Of P4502c9 With Flurbiprofen Bound
Length = 477
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 122/295 (41%), Gaps = 30/295 (10%)
Query: 28 SKTTSS----LPPSPMALPIIGH-LHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVAC 82
+K TSS LPP P LP+IG+ L + ++L LS YGP+ L+ G P +V
Sbjct: 2 AKKTSSGRGKLPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLH 61
Query: 83 SPETAKEILKTHETSFCDRPISAAVDYLTYG-SADFSFAPYGPYWKFMKKLCMTQLLGGQ 141
E KE L F R I + G FS G WK +++ + L
Sbjct: 62 GYEAVKEALIDLGEEFSGRGIFPLAERANRGFGIVFS---NGKKWKEIRRFSLMTLRNFG 118
Query: 142 TLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMGQICSINDKEA 201
+ I R +E R + L+K KAS D L NV+ + + D++
Sbjct: 119 MGKRSIEDRVQEEARCLVEELRKTKAS-PCDPTFILGCAPCNVICSIIFHKRFDYKDQQF 177
Query: 202 DEVRKLVQETAELTGKFNLQDYIWFCKN----IDL--QGFGKRLKEVRRKFDDMMERILK 255
+ + + E ++ +I C N ID K LK V ++E++ K
Sbjct: 178 LNLMEKLNENIKILS----SPWIQICNNFSPIIDYFPGTHNKLLKNVAFMKSYILEKV-K 232
Query: 256 EHQEARKINKETGKDYAPMDLLDMLLDISEDE--SSEIKLTRENIKAFILDIFAA 308
EHQE+ +N P D +D L E E + + T E+++ +D+F A
Sbjct: 233 EHQESMDMNN-------PQDFIDCFLMKMEKEKHNQPSEFTIESLENTAVDLFGA 280
>pdb|4H1N|A Chain A, Crystal Structure Of P450 2b4 F297a Mutant In Complex With
Anti- Platelet Drug Clopidogrel
Length = 479
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 127/291 (43%), Gaps = 22/291 (7%)
Query: 26 RRSKTTSSLPPSPMALPIIGHL------HLLAPIPHQALHKLSIRYGPLIHLFLGSVPCI 79
+++ + LPP P LP++G+L LL ++ +L +YG + ++LGS P +
Sbjct: 3 KKTSSKGKLPPGPSPLPVLGNLLQMDRKGLL-----RSFLRLREKYGDVFTVYLGSRPVV 57
Query: 80 VACSPETAKEILKTHETSFCDRPISAAVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLG 139
V C + +E L +F R A VD + G FA G W+ +++ + +
Sbjct: 58 VLCGTDAIREALVDQAEAFSGRGKIAVVDPIFQGYG-VIFA-NGERWRALRRFSLATMRD 115
Query: 140 GQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMGQICSINDK 199
+ + R +E R + L+K+K + +D +T+N++ + G+ D
Sbjct: 116 FGMGKRSVEERIQEEARCLVEELRKSKGA-LLDNTLLFHSITSNIICSIVFGKRFDYKDP 174
Query: 200 EADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQE 259
+ L ++ L F+ Q + F GF K R+ ++ I +
Sbjct: 175 VFLRLLDLFFQSFSLISSFSSQVFELFS------GFLKYFPGTHRQIYRNLQEINTFIGQ 228
Query: 260 ARKINKETGKDYAPMDLLDM-LLDISEDESS-EIKLTRENIKAFILDIFAA 308
+ + ++ T P D +D+ LL + +D+S + +N+ +L +FAA
Sbjct: 229 SVEKHRATLDPSNPRDFIDVYLLRMEKDKSDPSSEFHHQNLILTVLSLFAA 279
>pdb|1PO5|A Chain A, Structure Of Mammalian Cytochrome P450 2b4
Length = 476
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 64/291 (21%), Positives = 126/291 (43%), Gaps = 22/291 (7%)
Query: 26 RRSKTTSSLPPSPMALPIIGHL------HLLAPIPHQALHKLSIRYGPLIHLFLGSVPCI 79
+++ + LPP P LP++G+L LL ++ +L +YG + ++LGS P +
Sbjct: 3 KKTSSKGKLPPGPSPLPVLGNLLQMDRKGLL-----RSFLRLREKYGDVFTVYLGSRPVV 57
Query: 80 VACSPETAKEILKTHETSFCDRPISAAVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLG 139
V C + +E L +F R A VD + G FA G W+ +++ + +
Sbjct: 58 VLCGTDAIREALVDQAEAFSGRGKIAVVDPIFQGYG-VIFA-NGERWRALRRFSLATMRD 115
Query: 140 GQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMGQICSINDK 199
+ + R +E R + L+K+K + +D +T+N++ + G+ D
Sbjct: 116 FGMGKRSVEERIQEEARCLVEELRKSKGA-LLDNTLLFHSITSNIICSIVFGKRFDYKDP 174
Query: 200 EADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQE 259
+ L ++ L F+ Q + F GF K R+ ++ I +
Sbjct: 175 VFLRLLDLFFQSFSLISSFSSQVFELFS------GFLKHFPGTHRQIYRNLQEINTFIGQ 228
Query: 260 ARKINKETGKDYAPMDLLDM-LLDISEDESS-EIKLTRENIKAFILDIFAA 308
+ + ++ T P D +D+ LL + +D+S + +N+ +L +F A
Sbjct: 229 SVEKHRATLDPSNPRDFIDVYLLRMEKDKSDPSSEFHHQNLILTVLSLFFA 279
>pdb|2Q6N|A Chain A, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|B Chain B, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|C Chain C, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|D Chain D, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|E Chain E, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|F Chain F, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|G Chain G, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
Length = 478
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 81/179 (45%), Gaps = 14/179 (7%)
Query: 26 RRSKTTSSLPPSPMALPIIGHL------HLLAPIPHQALHKLSIRYGPLIHLFLGSVPCI 79
+++ + LPP P LP++G+L LL ++ +L +YG + ++LGS P +
Sbjct: 3 KKTSSKGKLPPGPSPLPVLGNLLQMDRKGLL-----RSFLRLREKYGDVFTVYLGSRPVV 57
Query: 80 VACSPETAKEILKTHETSFCDRPISAAVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLG 139
V C + +E L +F R A VD + G FA G W+ +++ + +
Sbjct: 58 VLCGTDAIREALVDQAEAFSGRGKIAVVDPIFQGYG-VIFA-NGERWRALRRFSLATMRD 115
Query: 140 GQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMGQICSIND 198
+ + R +E R + L+K+K + +D +T+N++ + G+ D
Sbjct: 116 FGMGKRSVEERIQEEARCLVEELRKSKGA-LLDNTLLFHSITSNIICSIVFGKRFDYKD 173
>pdb|1SUO|A Chain A, Structure Of Mammalian Cytochrome P450 2b4 With Bound
4-(4- Chlorophenyl)imidazole
pdb|2BDM|A Chain A, Structure Of Cytochrome P450 2b4 With Bound Bifonazole
pdb|3G5N|A Chain A, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|B Chain B, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|C Chain C, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|D Chain D, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|A Chain A, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|B Chain B, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|C Chain C, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|D Chain D, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3KW4|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Ticlopidine
pdb|3ME6|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|B Chain B, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|C Chain C, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|D Chain D, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3MVR|A Chain A, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3MVR|B Chain B, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3R1A|A Chain A, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|B Chain B, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|C Chain C, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|D Chain D, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|E Chain E, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|F Chain F, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|G Chain G, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|H Chain H, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|A Chain A, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|B Chain B, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|C Chain C, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|D Chain D, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3TMZ|A Chain A, Crystal Structure Of P450 2b4(H226y) In Complex With
Amlodipine
pdb|3UAS|A Chain A, Cytochrome P450 2b4 Covalently Bound To The
Mechanism-based Inactivator 9-ethynylphenanthrene
Length = 476
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 128/290 (44%), Gaps = 20/290 (6%)
Query: 26 RRSKTTSSLPPSPMALPIIGHL------HLLAPIPHQALHKLSIRYGPLIHLFLGSVPCI 79
+++ + LPP P LP++G+L LL ++ +L +YG + ++LGS P +
Sbjct: 3 KKTSSKGKLPPGPSPLPVLGNLLQMDRKGLL-----RSFLRLREKYGDVFTVYLGSRPVV 57
Query: 80 VACSPETAKEILKTHETSFCDRPISAAVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLG 139
V C + +E L +F R A VD + G FA G W+ +++ + +
Sbjct: 58 VLCGTDAIREALVDQAEAFSGRGKIAVVDPIFQGYG-VIFA-NGERWRALRRFSLATMRD 115
Query: 140 GQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMGQICSINDK 199
+ + R +E R + L+K+K + +D +T+N++ + G+ D
Sbjct: 116 FGMGKRSVEERIQEEARCLVEELRKSKGA-LLDNTLLFHSITSNIICSIVFGKRFDYKDP 174
Query: 200 EADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQE 259
+ L ++ L F+ Q + F L+ F +++ R ++ I + ++
Sbjct: 175 VFLRLLDLFFQSFSLISSFSSQVFELFSGF--LKYFPGTHRQIYRNLQEINTFIGQSVEK 232
Query: 260 AR-KINKETGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308
R ++ +D+ + LL M D S D SSE +N+ +L +F A
Sbjct: 233 HRATLDPSNPRDFIDVYLLRMEKDKS-DPSSEFH--HQNLILTVLSLFFA 279
>pdb|3TK3|A Chain A, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|B Chain B, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|C Chain C, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|D Chain D, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
Length = 476
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/291 (21%), Positives = 126/291 (43%), Gaps = 22/291 (7%)
Query: 26 RRSKTTSSLPPSPMALPIIGHL------HLLAPIPHQALHKLSIRYGPLIHLFLGSVPCI 79
+++ + LPP P LP++G+L LL ++ +L +YG + ++LGS P +
Sbjct: 3 KKTSSKGKLPPGPSPLPVLGNLLQMDRKGLL-----RSFLRLREKYGDVFTVYLGSRPVV 57
Query: 80 VACSPETAKEILKTHETSFCDRPISAAVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLG 139
V C + +E L +F R A VD + G FA G W+ +++ + +
Sbjct: 58 VLCGTDAIREALVDQAEAFSGRGKIAVVDPIFQGYG-VIFA-NGERWRALRRFSLATMRD 115
Query: 140 GQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMGQICSINDK 199
+ + R +E R + L+K+K + +D +T+N++ + G+ D
Sbjct: 116 FGMGKRSVEERIQEEARCLVEELRKSKGA-LLDNTLLFHSITSNIICSIVFGKRFDYKDP 174
Query: 200 EADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQE 259
+ L ++ L F+ Q + F GF K R+ ++ I +
Sbjct: 175 VFLRLLDLFFQSFSLISSFSSQVFELFS------GFLKYFPGTHRQIYRNLQEINTFIGQ 228
Query: 260 ARKINKETGKDYAPMDLLDM-LLDISEDESS-EIKLTRENIKAFILDIFAA 308
+ + ++ T P D +D+ LL + +D+S + +N+ +L +F A
Sbjct: 229 SVEKHRATLDPSNPRDFIDVYLLRMEKDKSDPSSEFHHQNLILTVLSLFFA 279
>pdb|4GQS|A Chain A, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|B Chain B, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|C Chain C, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|D Chain D, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
Length = 477
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 118/295 (40%), Gaps = 30/295 (10%)
Query: 28 SKTTSS----LPPSPMALPIIGH-LHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVAC 82
+K TSS LPP P LP+IG+ L + ++L LS YGP+ L+ G +V
Sbjct: 2 AKKTSSGRGKLPPGPTPLPVIGNILQIDIKDVSKSLTNLSKIYGPVFTLYFGLERMVVLH 61
Query: 83 SPETAKEILKTHETSFCDRPISAAVDYLTYG-SADFSFAPYGPYWKFMKKLCMTQLLGGQ 141
E KE L F R + G FS G WK +++ + L
Sbjct: 62 GYEVVKEALIDLGEEFSGRGHFPLAERANRGFGIVFS---NGKRWKEIRRFSLMTLRNFG 118
Query: 142 TLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMGQICSINDKEA 201
+ I R +E R + L+K KAS D L NV+ + + D++
Sbjct: 119 MGKRSIEDRVQEEARCLVEELRKTKAS-PCDPTFILGCAPCNVICSIIFQKRFDYKDQQF 177
Query: 202 DEVRKLVQETAELTGKFNLQDYIWFCKN----IDL--QGFGKRLKEVRRKFDDMMERILK 255
+ + + E + +I C N ID K LK + D++E++ K
Sbjct: 178 LNLMEKLNENIRIVS----TPWIQICNNFPTIIDYFPGTHNKLLKNLAFMESDILEKV-K 232
Query: 256 EHQEARKINKETGKDYAPMDLLDMLLDISEDE--SSEIKLTRENIKAFILDIFAA 308
EHQE+ IN P D +D L E E + + + T EN+ D+ A
Sbjct: 233 EHQESMDINN-------PRDFIDCFLIKMEKEKQNQQSEFTIENLVITAADLLGA 280
>pdb|2F9Q|A Chain A, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|B Chain B, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|C Chain C, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|D Chain D, Crystal Structure Of Human Cytochrome P450 2d6
Length = 479
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/257 (21%), Positives = 99/257 (38%), Gaps = 19/257 (7%)
Query: 60 KLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAVDYLTYG--SADF 117
+L R+G + L L P +V +E L TH DRP L +G S
Sbjct: 38 QLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPITQILGFGPRSQGV 97
Query: 118 SFAPYGPYWKFMKKLCMTQL----LGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDV 173
A YGP W+ ++ ++ L LG ++L Q++ +EE +
Sbjct: 98 FLARYGPAWREQRRFSVSTLRNLGLGKKSLEQWV---TEEAACLCAAFAN--HSGRPFRP 152
Query: 174 GKELIRLTNNVVSRMTMGQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQ 233
L + +NV++ +T G+ +D + L QE + F + + +
Sbjct: 153 NGLLDKAVSNVIASLTCGRRFEYDDPRFLRLLDLAQEGLKEESGFLREVLNAVPVDRHIP 212
Query: 234 GFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPMDLLDMLLDISEDE--SSEI 291
++ ++ F ++ +L EH+ + P DL + L E + E
Sbjct: 213 ALAGKVLRFQKAFLTQLDELLTEHRMTWDPAQ------PPRDLTEAFLAEMEKAKGNPES 266
Query: 292 KLTRENIKAFILDIFAA 308
EN++ + D+F+A
Sbjct: 267 SFNDENLRIVVADLFSA 283
>pdb|3QM4|A Chain A, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3QM4|B Chain B, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3TBG|A Chain A, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|B Chain B, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|C Chain C, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|D Chain D, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TDA|A Chain A, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|B Chain B, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|C Chain C, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|D Chain D, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
Length = 479
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/257 (21%), Positives = 99/257 (38%), Gaps = 19/257 (7%)
Query: 60 KLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAVDYLTYG--SADF 117
+L R+G + L L P +V +E L TH DRP L +G S
Sbjct: 38 QLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPITQILGFGPRSQGV 97
Query: 118 SFAPYGPYWKFMKKLCMTQL----LGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDV 173
A YGP W+ ++ ++ L LG ++L Q++ +EE +
Sbjct: 98 FLARYGPAWREQRRFSVSTLRNLGLGKKSLEQWV---TEEAACLCAAFAN--HSGRPFRP 152
Query: 174 GKELIRLTNNVVSRMTMGQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQ 233
L + +NV++ +T G+ +D + L QE + F + + +
Sbjct: 153 NGLLDKAVSNVIASLTCGRRFEYDDPRFLRLLDLAQEGLKEESGFLREVLNAVPVLLHIP 212
Query: 234 GFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPMDLLDMLLDISEDE--SSEI 291
++ ++ F ++ +L EH+ + P DL + L E + E
Sbjct: 213 ALAGKVLRFQKAFLTQLDELLTEHRMTWDPAQ------PPRDLTEAFLAEMEKAKGNPES 266
Query: 292 KLTRENIKAFILDIFAA 308
EN++ + D+F+A
Sbjct: 267 SFNDENLRIVVADLFSA 283
>pdb|3IBD|A Chain A, Crystal Structure Of A Cytochrome P450 2b6 Genetic Variant
In Complex With The Inhibitor
4-(4-Chlorophenyl)imidazole
pdb|3QOA|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-Benzylpyridine.
pdb|3QU8|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|B Chain B, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|C Chain C, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|D Chain D, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|E Chain E, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|F Chain F, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3UA5|A Chain A, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
pdb|3UA5|B Chain B, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
Length = 476
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 104/253 (41%), Gaps = 23/253 (9%)
Query: 64 RYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAVD--YLTYGSADFSFAP 121
+YG + + LG P ++ C E +E L +F R A VD + YG FA
Sbjct: 42 KYGDVFTVHLGPRPVVMLCGVEAIREALVDKAEAFSGRGKIAMVDPFFRGYGVI---FA- 97
Query: 122 YGPYWKFMKKLCMTQL----LGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKEL 177
G WK +++ +T + +G +++ + I EE ++ + K A +D
Sbjct: 98 NGNRWKVLRRFSVTTMRDFGMGKRSVEERI---QEEAQCLIEELRKSKGA--LMDPTFLF 152
Query: 178 IRLTNNVVSRMTMGQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGK 237
+T N++ + G+ D+E ++ L +T L Q + F GF K
Sbjct: 153 QSITANIICSIVFGKRFHYQDQEFLKMLNLFYQTFSLISSVFGQLFELFS------GFLK 206
Query: 238 RLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPMDLLDMLLDISEDESSEI--KLTR 295
R+ ++ I + + ++ET AP DL+D L E E S + +
Sbjct: 207 HFPGAHRQVYKNLQEINAYIGHSVEKHRETLDPSAPRDLIDTYLLHMEKEKSNAHSEFSH 266
Query: 296 ENIKAFILDIFAA 308
+N+ L +F A
Sbjct: 267 QNLNLNTLSLFFA 279
>pdb|3CZH|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
pdb|3CZH|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
Length = 481
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 87/236 (36%), Gaps = 20/236 (8%)
Query: 53 IPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAVDYLTY 112
+PH + K S YG + L LG + +V + KE L F DRP +T
Sbjct: 35 LPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPLFMKMTK 94
Query: 113 GSADFSFAPYGPYWKFMKKLCMTQL-LGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAV 171
+ + YG W ++L + G F EE +F ++ K
Sbjct: 95 MGGLLN-SRYGRGWVDHRRLAVNSFRYFGYGQKSFESKILEET-KFFNDAIETYKG-RPF 151
Query: 172 DVGKELIRLTNNVVSRMTMGQICSINDKEADEVRKLVQETAELTGK---FNLQDYIWFCK 228
D + + +N+ + + G+ + D + + +L E EL F + W
Sbjct: 152 DFKQLITNAVSNITNLIIFGERFTYEDTDFQHMIELFSENVELAASASVFLYNAFPW--- 208
Query: 229 NIDLQGFGKRLKEVRRK--FDDMMERILKEHQEARKINKETGKDYAPMDLLDMLLD 282
I + FGK + R D + R++ E +N+ K P +D LD
Sbjct: 209 -IGILPFGKHQQLFRNAAVVYDFLSRLI----EKASVNR---KPQLPQHFVDAYLD 256
>pdb|3C6G|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3C6G|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3DL9|A Chain A, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
pdb|3DL9|B Chain B, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
Length = 479
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 87/236 (36%), Gaps = 20/236 (8%)
Query: 53 IPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAVDYLTY 112
+PH + K S YG + L LG + +V + KE L F DRP +T
Sbjct: 35 LPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPLFMKMTK 94
Query: 113 GSADFSFAPYGPYWKFMKKLCMTQL-LGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAV 171
+ + YG W ++L + G F EE +F ++ K
Sbjct: 95 MGGLLN-SRYGRGWVDHRRLAVNSFRYFGYGQKSFESKILEET-KFFNDAIETYKG-RPF 151
Query: 172 DVGKELIRLTNNVVSRMTMGQICSINDKEADEVRKLVQETAELTGK---FNLQDYIWFCK 228
D + + +N+ + + G+ + D + + +L E EL F + W
Sbjct: 152 DFKQLITNAVSNITNLIIFGERFTYEDTDFQHMIELFSENVELAASASVFLYNAFPW--- 208
Query: 229 NIDLQGFGKRLKEVRRK--FDDMMERILKEHQEARKINKETGKDYAPMDLLDMLLD 282
I + FGK + R D + R++ E +N+ K P +D LD
Sbjct: 209 -IGILPFGKHQQLFRNAAVVYDFLSRLI----EKASVNR---KPQLPQHFVDAYLD 256
>pdb|4DVQ|A Chain A, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|B Chain B, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|C Chain C, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|D Chain D, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|E Chain E, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|F Chain F, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|G Chain G, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|H Chain H, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|I Chain I, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|J Chain J, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|K Chain K, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4DVQ|L Chain L, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Deoxycorticosterone
pdb|4FDH|A Chain A, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|B Chain B, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|C Chain C, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|D Chain D, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|E Chain E, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|F Chain F, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|G Chain G, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|H Chain H, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|I Chain I, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|J Chain J, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|K Chain K, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
pdb|4FDH|L Chain L, Structure Of Human Aldosterone Synthase, Cyp11b2, In
Complex With Fadrozole
Length = 483
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 12/141 (8%)
Query: 46 HLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISA 105
HLHL HQ +L GP+ LG + PE +++ + C +
Sbjct: 37 HLHLEM---HQTFQEL----GPIFRYNLGGPRMVCVMLPEDVEKLQQVDSLHPCRMILEP 89
Query: 106 AVDYLTY-GSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKK 164
V Y + G F GP W+F + +L + + +F+P+ F Q + KK
Sbjct: 90 WVAYRQHRGHKCGVFLLNGPEWRFNRLRLNPDVLSPKAVQRFLPMVDAVARDFSQALKKK 149
Query: 165 ----AKASEAVDVGKELIRLT 181
A+ S +DV + T
Sbjct: 150 VLQNARGSLTLDVQPSIFHYT 170
>pdb|3MZS|A Chain A, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
pdb|3MZS|B Chain B, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
pdb|3MZS|C Chain C, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
pdb|3MZS|D Chain D, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
Length = 486
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 9/136 (6%)
Query: 64 RYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDR-PISAAVDYLTYGSADFS--FA 120
+YGP+ LG++ + PE + K E S+ +R I + Y Y F
Sbjct: 46 KYGPIYREKLGNLESVYIIHPEDVAHLFK-FEGSYPERYDIPPWLAYHRYYQKPIGVLFK 104
Query: 121 PYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEA----VDVGKE 176
G WK + + T+++ + + FIP+ + F+ L+ K+ K + D+ ++
Sbjct: 105 KSGT-WKKDRVVLNTEVMAPEAIKNFIPLLNPVSQDFVSLLHKRIKQQGSGKFVGDIKED 163
Query: 177 LIRLTNNVVSRMTMGQ 192
L ++ + G+
Sbjct: 164 LFHFAFESITNVMFGE 179
>pdb|2IQH|A Chain A, Influenza A Virus Nucleoprotein Np At 3.2a Resolution
pdb|2IQH|B Chain B, Influenza A Virus Nucleoprotein Np At 3.2a Resolution
pdb|2IQH|C Chain C, Influenza A Virus Nucleoprotein Np At 3.2a Resolution
pdb|2WFS|A Chain A, Fitting Of Influenza Virus Np Structure Into The 9-Fold
Symmetryzed Cryoem Reconstruction Of An Active Rnp
Particle.
pdb|2WFS|B Chain B, Fitting Of Influenza Virus Np Structure Into The 9-Fold
Symmetryzed Cryoem Reconstruction Of An Active Rnp
Particle.
pdb|2WFS|C Chain C, Fitting Of Influenza Virus Np Structure Into The 9-Fold
Symmetryzed Cryoem Reconstruction Of An Active Rnp
Particle.
pdb|2WFS|D Chain D, Fitting Of Influenza Virus Np Structure Into The 9-Fold
Symmetryzed Cryoem Reconstruction Of An Active Rnp
Particle.
pdb|2WFS|E Chain E, Fitting Of Influenza Virus Np Structure Into The 9-Fold
Symmetryzed Cryoem Reconstruction Of An Active Rnp
Particle.
pdb|2WFS|F Chain F, Fitting Of Influenza Virus Np Structure Into The 9-Fold
Symmetryzed Cryoem Reconstruction Of An Active Rnp
Particle.
pdb|2WFS|G Chain G, Fitting Of Influenza Virus Np Structure Into The 9-Fold
Symmetryzed Cryoem Reconstruction Of An Active Rnp
Particle.
pdb|2WFS|H Chain H, Fitting Of Influenza Virus Np Structure Into The 9-Fold
Symmetryzed Cryoem Reconstruction Of An Active Rnp
Particle.
pdb|2WFS|I Chain I, Fitting Of Influenza Virus Np Structure Into The 9-Fold
Symmetryzed Cryoem Reconstruction Of An Active Rnp
Particle.
pdb|3RO5|A Chain A, Crystal Structure Of Influenza A Virus Nucleoprotein With
Ligand
pdb|3RO5|B Chain B, Crystal Structure Of Influenza A Virus Nucleoprotein With
Ligand
pdb|3TG6|A Chain A, Crystal Structure Of Influenza A Virus Nucleoprotein With
Ligand
pdb|3TG6|B Chain B, Crystal Structure Of Influenza A Virus Nucleoprotein With
Ligand
pdb|4BBL|A Chain A, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|B Chain B, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|C Chain C, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|D Chain D, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|E Chain E, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|F Chain F, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|G Chain G, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|H Chain H, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|I Chain I, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|J Chain J, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|K Chain K, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|L Chain L, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|M Chain M, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|N Chain N, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|O Chain O, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|P Chain P, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|Q Chain Q, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|R Chain R, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|S Chain S, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|T Chain T, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|U Chain U, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|V Chain V, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|W Chain W, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions.
pdb|4BBL|X Chain X, Cryo-Electron Microscopy Reconstruction Of The Helical
Part Of Influenza A Virus Ribonucleoprotein Isolated
From Virions
Length = 499
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 12/78 (15%)
Query: 199 KEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRL--------KEVRRKFDDMM 250
+ A E+R V + + G+F YI C + L + RL + V FD+
Sbjct: 13 QNATEIRASVGKMIDGIGRF----YIQMCTELKLSDYEGRLIQNSLTIERMVLSAFDERR 68
Query: 251 ERILKEHQEARKINKETG 268
+ L+EH A K K+TG
Sbjct: 69 NKYLEEHPSAGKDPKKTG 86
>pdb|2YMN|A Chain A, Organization Of The Influenza Virus Replication Machinery
pdb|2YMN|B Chain B, Organization Of The Influenza Virus Replication Machinery
pdb|2YMN|C Chain C, Organization Of The Influenza Virus Replication Machinery
pdb|2YMN|D Chain D, Organization Of The Influenza Virus Replication Machinery
pdb|2YMN|E Chain E, Organization Of The Influenza Virus Replication Machinery
pdb|2YMN|F Chain F, Organization Of The Influenza Virus Replication Machinery
Length = 498
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 12/78 (15%)
Query: 199 KEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRL--------KEVRRKFDDMM 250
+ A E+R V + + G+F YI C + L + RL + V FD+
Sbjct: 20 QNATEIRASVGKMIDGIGRF----YIQMCTELKLSDYEGRLIQNSLTIERMVLSAFDERR 75
Query: 251 ERILKEHQEARKINKETG 268
+ L+EH A K K+TG
Sbjct: 76 NKYLEEHPSAGKDPKKTG 93
>pdb|2G7H|A Chain A, Structure Of An O6-Methylguanine Dna Methyltransferase
From Methanococcus Jannaschii (Mj1529)
Length = 167
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 12/102 (11%)
Query: 139 GGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMGQICSIND 198
G Q + IP+R EEI+ FM + E + V + +++L I+D
Sbjct: 16 GNQLVRNTIPLRREEIFNFMDGEVVSNPEDEHLKVAEIILKL-----------YFAEIDD 64
Query: 199 KEADEVRKLVQETAELTGK-FNLQDYIWFCKNIDLQGFGKRL 239
K+ E+ E E T K ++ I F K + K+L
Sbjct: 65 KKVRELISYKLEVPEFTKKVLDIVKDIEFGKTLTYGDIAKKL 106
>pdb|4IRY|B Chain B, Influenza A Virus Tail-loop Free Nucleoprotein At 2.8 A
Resolution
pdb|4IRY|A Chain A, Influenza A Virus Tail-loop Free Nucleoprotein At 2.8 A
Resolution
Length = 483
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 12/78 (15%)
Query: 199 KEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRL--------KEVRRKFDDMM 250
+ A E+R V + + G+F YI C + L + RL + V FD+
Sbjct: 20 QNATEIRASVGKMIDGIGRF----YIQMCTELKLSDYEGRLIQNSLTIERMVLSAFDERR 75
Query: 251 ERILKEHQEARKINKETG 268
+ L+EH A K K+TG
Sbjct: 76 NKYLEEHPSAGKDPKKTG 93
>pdb|2PV7|A Chain A, Crystal Structure Of Chorismate Mutase PREPHENATE
DEHYDROGENASE (Tyra) (1574749) From Haemophilus
Influenzae Rd At 2.00 A Resolution
pdb|2PV7|B Chain B, Crystal Structure Of Chorismate Mutase PREPHENATE
DEHYDROGENASE (Tyra) (1574749) From Haemophilus
Influenzae Rd At 2.00 A Resolution
Length = 298
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 157 FMQLMLKKAKASEAVDVGKELIRLTN-----NVVSRMTMGQICSINDKEADEVRKLVQET 211
++Q + + + + + K+ I L N + + R+ + I + ++A+ ++ +
Sbjct: 175 YIQALRHFSTFANGLHLSKQPINLANLLALSSPIYRLELAXIGRLFAQDAELYADIIXDK 234
Query: 212 AE-----LTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQE 259
+E T K + + F +N D QGF +VR F D E+ LKE ++
Sbjct: 235 SENLAVIETLKQTYDEALTFFENNDRQGFIDAFHKVRDWFGDYSEQFLKESRQ 287
>pdb|3IYS|A Chain A, Homology Model Of Avian Polyomavirus Asymmetric Unit
pdb|3IYS|B Chain B, Homology Model Of Avian Polyomavirus Asymmetric Unit
pdb|3IYS|C Chain C, Homology Model Of Avian Polyomavirus Asymmetric Unit
pdb|3IYS|D Chain D, Homology Model Of Avian Polyomavirus Asymmetric Unit
pdb|3IYS|E Chain E, Homology Model Of Avian Polyomavirus Asymmetric Unit
pdb|3IYS|F Chain F, Homology Model Of Avian Polyomavirus Asymmetric Unit
Length = 343
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 146 FIPIRSEEIWR----FMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMGQICSINDKEA 201
++ R + WR + + L+K V L L N+++ RMT GQ +D +
Sbjct: 261 YVDQRGRQYWRGLPRYFSIQLRKRNVRNPYPVSGLLNSLFNDLMPRMT-GQSMQGSDAQV 319
Query: 202 DEVR 205
+EVR
Sbjct: 320 EEVR 323
>pdb|2Q06|A Chain A, Crystal Structure Of Influenza A Virus H5n1 Nucleoprotein
pdb|2Q06|B Chain B, Crystal Structure Of Influenza A Virus H5n1 Nucleoprotein
Length = 504
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 12/78 (15%)
Query: 199 KEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRL--------KEVRRKFDDMM 250
+ A E+R V G+F YI C + L RL + V FD+
Sbjct: 26 QNATEIRASVGRMVGGIGRF----YIQMCTELKLSDQEGRLIQNSITIERMVLSAFDERR 81
Query: 251 ERILKEHQEARKINKETG 268
R L+EH A K K+TG
Sbjct: 82 NRYLEEHPSAGKDPKKTG 99
>pdb|3VGD|A Chain A, Ctystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252e)
Length = 558
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 13/66 (19%)
Query: 191 GQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMM 250
G + +D E+DEVRK + E E ++ K ++ GF RL+ V D
Sbjct: 216 GLTFNFDDAESDEVRKFILENVE-----------YWIKEYNVDGF--RLEAVHAIIDTSP 262
Query: 251 ERILKE 256
+ IL+E
Sbjct: 263 KHILEE 268
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,539,072
Number of Sequences: 62578
Number of extensions: 331653
Number of successful extensions: 1264
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1212
Number of HSP's gapped (non-prelim): 48
length of query: 308
length of database: 14,973,337
effective HSP length: 99
effective length of query: 209
effective length of database: 8,778,115
effective search space: 1834626035
effective search space used: 1834626035
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.3 bits)