Query 040102
Match_columns 308
No_of_seqs 112 out of 1154
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 05:10:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040102.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040102hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0156 Cytochrome P450 CYP2 s 100.0 5.4E-46 1.2E-50 344.7 30.3 273 27-308 20-297 (489)
2 PLN02971 tryptophan N-hydroxyl 100.0 6.6E-37 1.4E-41 291.7 31.7 274 30-308 54-338 (543)
3 PLN02687 flavonoid 3'-monooxyg 100.0 1.1E-36 2.4E-41 288.9 30.9 295 8-308 7-308 (517)
4 PLN03234 cytochrome P450 83B1; 100.0 1.2E-35 2.7E-40 280.8 30.7 280 23-308 18-299 (499)
5 PLN02183 ferulate 5-hydroxylas 100.0 1.3E-35 2.8E-40 281.5 30.5 285 18-308 21-315 (516)
6 PLN03112 cytochrome P450 famil 100.0 4.3E-35 9.3E-40 278.0 31.7 276 29-308 28-307 (514)
7 PLN00110 flavonoid 3',5'-hydro 100.0 1E-34 2.2E-39 274.3 31.3 272 30-308 28-300 (504)
8 PLN00168 Cytochrome P450; Prov 100.0 4.1E-34 8.9E-39 271.5 30.9 301 6-308 4-317 (519)
9 PLN02966 cytochrome P450 83A1 100.0 1.2E-33 2.7E-38 267.2 28.9 281 21-308 18-300 (502)
10 PLN02655 ent-kaurene oxidase 100.0 1.2E-33 2.6E-38 264.9 25.8 262 35-308 1-273 (466)
11 PLN03018 homomethionine N-hydr 100.0 7.8E-32 1.7E-36 255.8 31.2 274 31-308 38-325 (534)
12 PLN02290 cytokinin trans-hydro 100.0 2.6E-32 5.6E-37 259.1 26.0 263 33-308 42-327 (516)
13 KOG0158 Cytochrome P450 CYP3/C 100.0 4.4E-32 9.6E-37 249.3 24.7 276 18-308 16-305 (499)
14 PLN02394 trans-cinnamate 4-mon 100.0 3.2E-31 7E-36 250.9 30.1 284 18-308 14-304 (503)
15 PTZ00404 cytochrome P450; Prov 100.0 1.8E-31 4E-36 251.3 27.9 266 29-308 25-294 (482)
16 PLN02500 cytochrome P450 90B1 100.0 5.4E-30 1.2E-34 241.8 24.5 269 11-308 14-290 (490)
17 PLN02169 fatty acid (omega-1)- 100.0 2.1E-29 4.6E-34 237.9 24.3 287 9-308 11-312 (500)
18 KOG0157 Cytochrome P450 CYP4/C 100.0 1.2E-29 2.6E-34 238.7 22.2 263 31-308 33-302 (497)
19 PLN02987 Cytochrome P450, fami 100.0 6.8E-29 1.5E-33 232.6 24.5 268 9-308 6-278 (472)
20 PF00067 p450: Cytochrome P450 100.0 8.4E-30 1.8E-34 236.8 15.3 264 35-308 1-273 (463)
21 PLN02774 brassinosteroid-6-oxi 100.0 1.1E-28 2.4E-33 231.2 22.3 247 30-308 28-275 (463)
22 PLN02196 abscisic acid 8'-hydr 100.0 2.7E-28 5.8E-33 228.6 24.6 243 30-308 32-275 (463)
23 PLN02302 ent-kaurenoic acid ox 100.0 2.5E-27 5.4E-32 223.7 28.3 252 30-308 39-298 (490)
24 PLN03195 fatty acid omega-hydr 100.0 1.9E-27 4E-32 225.9 25.0 265 35-308 32-303 (516)
25 PLN03141 3-epi-6-deoxocathaste 100.0 1.6E-27 3.4E-32 222.8 22.1 252 30-308 4-262 (452)
26 PLN02936 epsilon-ring hydroxyl 99.9 2.7E-26 5.9E-31 216.4 22.6 266 31-308 10-289 (489)
27 PLN02738 carotene beta-ring hy 99.9 3.2E-24 6.8E-29 206.7 22.8 253 43-308 141-402 (633)
28 KOG0159 Cytochrome P450 CYP11/ 99.9 4.8E-21 1E-25 173.8 21.6 260 33-308 50-327 (519)
29 PLN02426 cytochrome P450, fami 99.9 2.8E-20 6.2E-25 175.8 23.8 245 40-308 48-304 (502)
30 PLN02648 allene oxide synthase 99.8 2.3E-19 5E-24 167.9 8.9 159 32-195 16-193 (480)
31 KOG0684 Cytochrome P450 [Secon 99.7 1.1E-15 2.4E-20 136.2 19.3 263 20-308 19-284 (486)
32 COG2124 CypX Cytochrome P450 [ 99.7 4.3E-15 9.2E-20 137.1 19.1 236 36-308 5-247 (411)
33 PF15117 UPF0697: Uncharacteri 76.3 0.53 1.1E-05 32.5 -1.0 27 9-35 20-46 (99)
34 KOG0114 Predicted RNA-binding 71.0 16 0.00036 26.7 5.5 61 31-93 10-76 (124)
35 PLN03120 nucleic acid binding 61.7 31 0.00067 29.8 6.4 60 43-104 8-73 (260)
36 PF00076 RRM_1: RNA recognitio 60.9 29 0.00063 22.3 5.1 56 43-100 2-66 (70)
37 PF13625 Helicase_C_3: Helicas 54.3 25 0.00054 26.7 4.3 38 54-93 76-113 (129)
38 smart00362 RRM_2 RNA recogniti 53.9 53 0.0011 20.6 6.0 39 55-93 13-58 (72)
39 PF13893 RRM_5: RNA recognitio 52.1 41 0.00088 20.9 4.5 43 59-101 2-49 (56)
40 TIGR01661 ELAV_HUD_SF ELAV/HuD 52.0 39 0.00084 30.3 6.0 60 42-103 272-341 (352)
41 PF14259 RRM_6: RNA recognitio 51.1 35 0.00076 22.2 4.2 51 43-95 2-60 (70)
42 PF12273 RCR: Chitin synthesis 49.4 13 0.00029 28.3 2.1 23 6-29 7-29 (130)
43 cd01324 cbb3_Oxidase_CcoQ Cyto 45.5 29 0.00063 21.4 2.8 21 7-28 14-34 (48)
44 PF05393 Hum_adeno_E3A: Human 43.7 60 0.0013 22.8 4.3 8 38-45 64-71 (94)
45 PLN03134 glycine-rich RNA-bind 40.2 90 0.002 24.2 5.5 60 41-102 36-105 (144)
46 PF15330 SIT: SHP2-interacting 40.1 66 0.0014 23.7 4.4 11 40-50 45-55 (107)
47 PF14316 DUF4381: Domain of un 38.0 36 0.00078 26.5 3.0 23 6-28 22-44 (146)
48 cd00590 RRM RRM (RNA recogniti 38.0 1E+02 0.0022 19.3 6.2 41 55-95 13-61 (74)
49 COG3763 Uncharacterized protei 37.8 41 0.00088 22.5 2.7 22 7-28 6-28 (71)
50 KOG3653 Transforming growth fa 33.1 1.6E+02 0.0034 28.0 6.6 40 63-102 221-260 (534)
51 PF03742 PetN: PetN ; InterPr 32.8 87 0.0019 17.0 3.0 20 4-23 5-24 (29)
52 PF15050 SCIMP: SCIMP protein 32.1 1.2E+02 0.0026 22.7 4.6 15 33-47 68-83 (133)
53 PF07400 IL11: Interleukin 11; 31.8 34 0.00075 27.8 1.9 27 14-40 3-30 (199)
54 PHA02902 putative IMV membrane 31.7 1.5E+02 0.0033 19.4 4.7 6 56-61 60-65 (70)
55 PF11770 GAPT: GRB2-binding ad 30.4 11 0.00025 29.2 -0.9 10 18-27 26-35 (158)
56 PF09802 Sec66: Preprotein tra 29.9 50 0.0011 27.1 2.6 24 5-29 7-30 (190)
57 KOG4826 C-8,7 sterol isomerase 29.1 2.6E+02 0.0055 23.4 6.5 21 55-75 90-110 (229)
58 COG4459 NapE Periplasmic nitra 29.1 55 0.0012 20.9 2.1 6 35-40 56-61 (62)
59 PRK11677 hypothetical protein; 28.0 81 0.0018 24.3 3.3 21 5-25 1-21 (134)
60 PF01445 SH: Viral small hydro 25.9 1.2E+02 0.0026 19.1 3.1 17 9-25 11-27 (57)
61 PF14840 DNA_pol3_delt_C: Proc 25.5 2E+02 0.0044 21.7 5.2 55 124-184 64-118 (125)
62 PF07912 ERp29_N: ERp29, N-ter 25.3 2.9E+02 0.0063 21.0 5.7 44 59-102 71-126 (126)
63 PF05172 Nup35_RRM: Nup53/35/4 23.9 1.8E+02 0.004 21.0 4.4 44 57-100 21-80 (100)
64 PF10361 DUF2434: Protein of u 23.4 95 0.0021 27.2 3.3 42 5-46 46-87 (296)
65 PRK10834 vancomycin high tempe 23.4 4.7E+02 0.01 22.3 7.7 56 39-95 46-110 (239)
66 PF05545 FixQ: Cbb3-type cytoc 23.3 1.2E+02 0.0026 18.5 3.0 7 22-28 27-33 (49)
67 KOG3054 Uncharacterized conser 23.2 1.7E+02 0.0036 25.0 4.5 22 7-28 6-27 (299)
68 PF09061 Stirrup: Stirrup; In 23.2 1.7E+02 0.0037 19.2 3.6 16 55-70 9-24 (79)
69 PF15183 MRAP: Melanocortin-2 22.9 2.4E+02 0.0052 19.7 4.4 10 7-16 43-52 (90)
70 PRK10299 PhoPQ regulatory prot 22.8 83 0.0018 19.2 2.0 13 7-19 6-18 (47)
71 PF10812 DUF2561: Protein of u 22.6 1.1E+02 0.0024 25.1 3.3 22 7-28 64-89 (207)
72 COG1927 Mtd Coenzyme F420-depe 22.0 4.8E+02 0.01 21.9 7.9 106 55-163 49-166 (277)
73 PF05084 GRA6: Granule antigen 21.8 1.7E+02 0.0038 23.1 4.1 25 22-47 167-194 (215)
74 PF14990 DUF4516: Domain of un 21.3 2.1E+02 0.0046 17.6 4.1 32 7-38 10-42 (47)
75 PF08693 SKG6: Transmembrane a 21.2 53 0.0011 19.4 0.9 8 21-28 31-38 (40)
76 smart00360 RRM RNA recognition 21.2 2.1E+02 0.0045 17.4 4.9 39 55-93 10-57 (71)
77 PF05454 DAG1: Dystroglycan (D 20.9 33 0.00071 30.2 0.0 23 7-29 152-174 (290)
78 cd01646 RT_Bac_retron_I RT_Bac 20.7 1.1E+02 0.0023 23.9 3.0 56 31-92 51-107 (158)
79 PF05781 MRVI1: MRVI1 protein; 20.6 1.2E+02 0.0026 29.1 3.6 34 7-40 481-514 (538)
80 PF15206 FAM209: FAM209 family 20.1 1.3E+02 0.0029 23.2 3.1 38 6-44 35-77 (150)
81 PF13194 DUF4010: Domain of un 20.0 2.3E+02 0.0049 23.7 4.8 17 11-27 91-107 (211)
No 1
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.4e-46 Score=344.74 Aligned_cols=273 Identities=41% Similarity=0.713 Sum_probs=232.7
Q ss_pred hccCCCCCCCCCCCCCeeeecccCCCC-chHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCcc-
Q 040102 27 RSKTTSSLPPSPMALPIIGHLHLLAPI-PHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPIS- 104 (308)
Q Consensus 27 ~~~~~~~~pPgP~~~PllGnl~~l~~~-~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~- 104 (308)
+++++.++||||+++|+|||++++... +|..|++|+++|||+|.+|+|++|+|||+|+++|||+|++++..|++||..
T Consensus 20 ~~~~~~~lPPGP~~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~~~Vviss~~~akE~l~~~d~~fa~Rp~~~ 99 (489)
T KOG0156|consen 20 KYRKRRNLPPGPPPLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSVPVVVISSYEAAKEVLVKQDLEFADRPDPT 99 (489)
T ss_pred hccCCCCCCcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCceEEEECCHHHHHHHHHhCCccccCCCCch
Confidence 344447899999999999999999765 899999999999999999999999999999999999999999999999982
Q ss_pred ccccccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHH
Q 040102 105 AAVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNV 184 (308)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~v 184 (308)
...+.+..++.++++++||+.||.+||++...+|+.+.++++.....+|++.+++.+.+ .+.+++||+...+..+++||
T Consensus 100 ~~~~~~~~~~~~i~~a~yG~~Wr~~Rr~~~~~L~~~~~~~~~~~~R~~E~~~l~~~l~~-~~~~~~vdl~~~l~~~~~nv 178 (489)
T KOG0156|consen 100 ATLKYLSYGGKGIVFAPYGDYWREMRRFALTELRSFGRGKSFMEIREEEVDELVKKLSK-SKKGEPVDLSELLDLLVGNV 178 (489)
T ss_pred hhHHHhcCCCCceEeCCCcHHHHHHHHHHHHHhcChhhhhhhHHHHHHHHHHHHHHHHh-cCCCceeeHHHHHHHHHHHH
Confidence 34466666667899998999999999999988999999999999999999999999987 22237999999999999999
Q ss_pred HHHHHhcCcccCCc-hhHHHHHHHHHHHHHHhCCCCcccccc-cccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040102 185 VSRMTMGQICSIND-KEADEVRKLVQETAELTGKFNLQDYIW-FCKNID-LQGFGKRLKEVRRKFDDMMERILKEHQEAR 261 (308)
Q Consensus 185 i~~~~fG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~~~~-~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~ 261 (308)
||+++||.+++..+ ++..++.+.+.+..++.+...+.+++| ++.+++ ..+..++......+++++++++|++|++..
T Consensus 179 I~~~~fG~rf~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~i~eh~~~~ 258 (489)
T KOG0156|consen 179 ICRMLFGRRFEEEDEEEFLELKELVEESLELLGSFNLSDYFPFLLRWLDGISGLEKRLKKVSKRLDEFLERIIDEHREKI 258 (489)
T ss_pred HHHHHhCCccccCCchHHHHHHHHHHHHHHHhCCccHHHHhhHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999996533 334568889999999988888899999 566643 346678888888889999999999998764
Q ss_pred hhhhccCCCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 262 KINKETGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 262 ~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
. . ++.+||+|.||+..++++.+ .+|+++|...|++|++|
T Consensus 259 ~----~---~~~~D~vD~lL~~~~~~~~~-~~t~~~i~~~~~dl~~A 297 (489)
T KOG0156|consen 259 G----D---EEGRDFVDALLKLMKEEKAE-GLTDDHLKALILDLFLA 297 (489)
T ss_pred c----c---CCCCcHHHHHHHhhcccccC-CCCHHHHHHHHHHHHhc
Confidence 2 1 12389999999997654312 29999999999999987
No 2
>PLN02971 tryptophan N-hydroxylase
Probab=100.00 E-value=6.6e-37 Score=291.74 Aligned_cols=274 Identities=25% Similarity=0.376 Sum_probs=204.6
Q ss_pred CCCCCCCCCCCCCeeeecccCC-CC-chHHHHHHHHhcC-CeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCcccc
Q 040102 30 TTSSLPPSPMALPIIGHLHLLA-PI-PHQALHKLSIRYG-PLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAA 106 (308)
Q Consensus 30 ~~~~~pPgP~~~PllGnl~~l~-~~-~~~~~~~~~~~yG-~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~ 106 (308)
++.++||||+++|++||++++. .. .+..+.+|.++|| +++++|+|++|+|||+||++++++|++++..|++||....
T Consensus 54 r~~~lPPGP~~lPiiGnl~~l~~~~~~~~~l~~~~~~yg~~i~~~~~G~~~~vvv~dpe~ikevl~~~~~~f~~rp~~~~ 133 (543)
T PLN02971 54 KLHPLPPGPTGFPIVGMIPAMLKNRPVFRWLHSLMKELNTEIACVRLGNTHVIPVTCPKIAREIFKQQDALFASRPLTYA 133 (543)
T ss_pred CCCCCCcCCCCCCcccchHHhccCCcHhHHHHHHHHHhCCceEEEEcCCcceEEECCHHHHHHHHHhcchhhcCCCcccc
Confidence 4557899999999999998873 33 3678999999999 8999999999999999999999999999999999986544
Q ss_pred ccccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHH
Q 040102 107 VDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVS 186 (308)
Q Consensus 107 ~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~ 186 (308)
...+..+..+++++.+|+.||++||+++.++|++..++.+.++++++++.+++.+.+.+.++.++|+.+++.++|+|+|+
T Consensus 134 ~~~l~~~~~~~l~~~~G~~Wk~~Rk~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~ 213 (543)
T PLN02971 134 QKILSNGYKTCVITPFGEQFKKMRKVIMTEIVCPARHRWLHDNRAEETDHLTAWLYNMVKNSEPVDLRFVTRHYCGNAIK 213 (543)
T ss_pred hhhccCCCCceEecCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHH
Confidence 33333322345777889999999999976778887788889999999999998887654445689999999999999999
Q ss_pred HHHhcCcccCCc-----hhHHHHHHHHHHHHHHhC---CCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 040102 187 RMTMGQICSIND-----KEADEVRKLVQETAELTG---KFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQ 258 (308)
Q Consensus 187 ~~~fG~~~~~~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~ 258 (308)
+++||.++...+ +...++.+.+++.+.... ...+.+++|++++++..+..++.++..+.+++++.++|++++
T Consensus 214 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 293 (543)
T PLN02971 214 RLMFGTRTFSEKTEPDGGPTLEDIEHMDAMFEGLGFTFAFCISDYLPMLTGLDLNGHEKIMRESSAIMDKYHDPIIDERI 293 (543)
T ss_pred HHHhCCcccccccccccchhHHHHHHHHHHHHHHHhccCCcHHHhCCchhhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999873211 111223333444333221 122456778776643334455666677888999999999887
Q ss_pred HHhhhhhccCCCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 259 EARKINKETGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 259 ~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
+..+ .+......|+++.||+..++++ ...+|+++|++++.++++|
T Consensus 294 ~~~~----~~~~~~~~d~l~~ll~~~~~~~-~~~ls~~~i~~~~~~l~~A 338 (543)
T PLN02971 294 KMWR----EGKRTQIEDFLDIFISIKDEAG-QPLLTADEIKPTIKELVMA 338 (543)
T ss_pred HHHh----ccCCCCCcCHHHHHHhhhcccC-CCCCCHHHHHHhHHHHhee
Confidence 6432 1111134699999998754321 1249999999999999986
No 3
>PLN02687 flavonoid 3'-monooxygenase
Probab=100.00 E-value=1.1e-36 Score=288.85 Aligned_cols=295 Identities=32% Similarity=0.597 Sum_probs=222.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc--CCCCCCCCCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHH
Q 040102 8 IVLFLVWLVSTILVRSIFRRSK--TTSSLPPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPE 85 (308)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~pPgP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e 85 (308)
++++++++-.++.++++++... +..++||||+++|++||++++..+++..+.+|.++||++|++++|++|+||++||+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pPgp~~~P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~p~ 86 (517)
T PLN02687 7 LLLGTVAVSVLVWCLLLRRGGSGKHKRPLPPGPRGWPVLGNLPQLGPKPHHTMAALAKTYGPLFRLRFGFVDVVVAASAS 86 (517)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCCCCCCccCCCCCccccHHhcCCchhHHHHHHHHHhCCeeEEecCCceEEEeCCHH
Confidence 3333333332444445443332 34568999999999999988866688999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccCCccccccccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhc
Q 040102 86 TAKEILKTHETSFCDRPISAAVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKA 165 (308)
Q Consensus 86 ~~~evl~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~ 165 (308)
+++++|++++..|++||.....+.+...+.+++++.+|+.||++||++..++|+.++++.+.+++++++.++++.|.+..
T Consensus 87 ~~~~il~~~~~~f~~r~~~~~~~~~~~~~~~~l~~~~g~~Wk~~Rr~l~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~ 166 (517)
T PLN02687 87 VAAQFLRTHDANFSNRPPNSGAEHMAYNYQDLVFAPYGPRWRALRKICAVHLFSAKALDDFRHVREEEVALLVRELARQH 166 (517)
T ss_pred HHHHHHHhcchhhhcCCCccchhhhccCCceeEeCCCCHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999998655444443323456777789999999999964789999999999999999999999997642
Q ss_pred cCCCceehHHHHHHHHHHHHHHHHhcCcccCCc--hhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHH
Q 040102 166 KASEAVDVGKELIRLTNNVVSRMTMGQICSIND--KEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVR 243 (308)
Q Consensus 166 ~~~~~vd~~~~~~~~t~~vi~~~~fG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~ 243 (308)
++.++|+.+.+..+++|+|+..+||.++...+ .....+.+.+.......+...+.+++|++.++.+++..++..+..
T Consensus 167 -~~~~vd~~~~~~~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~ 245 (517)
T PLN02687 167 -GTAPVNLGQLVNVCTTNALGRAMVGRRVFAGDGDEKAREFKEMVVELMQLAGVFNVGDFVPALRWLDLQGVVGKMKRLH 245 (517)
T ss_pred -CCCceeHHHHHHHHHHHHHHHHHhCccccccCCcchHHHHHHHHHHHHHHhccCcHHHHhhhHHHhCcccHHHHHHHHH
Confidence 35689999999999999999999999874322 223556666666655444333346778766643333445667778
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCHHHHHhhccccc---cccCCCCHHHHHHHHHHHhcC
Q 040102 244 RKFDDMMERILKEHQEARKINKETGKDYAPMDLLDMLLDISEDE---SSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 244 ~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~---~~~~~lt~~~i~~~~~~l~~A 308 (308)
+.+++++.++|+++++... .++ ....|+++.||+..+++ +.+..+|+++|.+++.++++|
T Consensus 246 ~~~~~~~~~~i~~r~~~~~----~~~-~~~~d~l~~ll~~~~~~~~~~~~~~l~~~~i~~~~~~~~~A 308 (517)
T PLN02687 246 RRFDAMMNGIIEEHKAAGQ----TGS-EEHKDLLSTLLALKREQQADGEGGRITDTEIKALLLNLFTA 308 (517)
T ss_pred HHHHHHHHHHHHHHHHhcc----ccC-cccccHHHHHHHhhccccccccccCCCHHHHHHHHHHHhcc
Confidence 8889999999998876532 111 24579999999875431 112369999999999999876
No 4
>PLN03234 cytochrome P450 83B1; Provisional
Probab=100.00 E-value=1.2e-35 Score=280.78 Aligned_cols=280 Identities=32% Similarity=0.556 Sum_probs=212.1
Q ss_pred HHHhhccCCCCCCCCCCCCCeeeecccCC-CCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccC
Q 040102 23 SIFRRSKTTSSLPPSPMALPIIGHLHLLA-PIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDR 101 (308)
Q Consensus 23 ~~~~~~~~~~~~pPgP~~~PllGnl~~l~-~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~R 101 (308)
.+.+..++..+.||||+++|++||++++. .+++.++.+|+++||+++++++|+.++||++|||++++++.+++..|.+|
T Consensus 18 ~~~~~~~~~~~~pPgp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~~~~~~lg~~~~vvv~dpe~~~~il~~~~~~f~~r 97 (499)
T PLN03234 18 FLRSTTKKSLRLPPGPKGLPIIGNLHQMEKFNPQHFLFRLSKLYGPIFTMKIGGRRLAVISSAELAKELLKTQDLNFTAR 97 (499)
T ss_pred HHHHhcCCCCCCCcCCCCCCeeccHHhcCCCCccHHHHHHHHHcCCeEEEEecCcCEEEECCHHHHHHHHHhCCccccCC
Confidence 44444455667899999999999999885 36788999999999999999999999999999999999999999999999
Q ss_pred CccccccccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHH
Q 040102 102 PISAAVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLT 181 (308)
Q Consensus 102 p~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t 181 (308)
|...........+..+.+..+|+.|+.+||.+..++|++++++.+.+.++++++++++.|.+..++++++|+.+.+.+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~Rr~l~~~~f~~~~l~~~~~~i~~~~~~ll~~l~~~~~~~~~vd~~~~~~~~t 177 (499)
T PLN03234 98 PLLKGQQTMSYQGRELGFGQYTAYYREMRKMCMVNLFSPNRVASFRPVREEECQRMMDKIYKAADQSGTVDLSELLLSFT 177 (499)
T ss_pred CCchhhhhhccCCCccccCCCcHHHHHHHHHHHHHhcCHHHHHHhHHHHHHHHHHHHHHHHHhccCCCeEEHHHHHHHHH
Confidence 85432222221122333556789999999986558899999999999999999999999976544567899999999999
Q ss_pred HHHHHHHHhcCcccCCchhHHHHHHHHHHHHHHhCCCCccccccccccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040102 182 NNVVSRMTMGQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNI-DLQGFGKRLKEVRRKFDDMMERILKEHQEA 260 (308)
Q Consensus 182 ~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~-~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~ 260 (308)
+|+|+.++||.+++..+.+..++.+.+.+.....+.....+.+|++.++ .+.+..+++.++.+.+++++.++|+++++.
T Consensus 178 ~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 257 (499)
T PLN03234 178 NCVVCRQAFGKRYNEYGTEMKRFIDILYETQALLGTLFFSDLFPYFGFLDNLTGLSARLKKAFKELDTYLQELLDETLDP 257 (499)
T ss_pred HHHHHHHHhCCcccccchhHHHHHHHHHHHHHHcCCCcHHHHhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999998542222345555555544443333344566765442 123445678888999999999999987654
Q ss_pred hhhhhccCCCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 261 RKINKETGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 261 ~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
.. . + ...+|+++.|++..++++++..+++++|++++.++++|
T Consensus 258 ~~----~-~-~~~~d~l~~l~~~~~~~~~~~~~~~~~i~~~~~~ll~A 299 (499)
T PLN03234 258 NR----P-K-QETESFIDLLMQIYKDQPFSIKFTHENVKAMILDIVVP 299 (499)
T ss_pred cc----c-C-CCcccHHHHHHHHhhccCcCCCCCHHHHHHHHHHHHhc
Confidence 21 1 1 24579999999875432212269999999999999987
No 5
>PLN02183 ferulate 5-hydroxylase
Probab=100.00 E-value=1.3e-35 Score=281.53 Aligned_cols=285 Identities=33% Similarity=0.641 Sum_probs=213.6
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccc
Q 040102 18 TILVRSIFRRSKTTSSLPPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETS 97 (308)
Q Consensus 18 ~~~~~~~~~~~~~~~~~pPgP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~ 97 (308)
+.+.++++++..++.++||||+++|++||++++...++..+.+|.++||++|++++|++|+||++||++++++|++++..
T Consensus 21 ~~~~~~~~~~~~~~~~~ppgp~~~Pl~G~l~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~ 100 (516)
T PLN02183 21 LFLFLGLISRLRRRLPYPPGPKGLPIIGNMLMMDQLTHRGLANLAKQYGGLFHMRMGYLHMVAVSSPEVARQVLQVQDSV 100 (516)
T ss_pred HHHHHHHHhhccCCCCCCcCCCCCCeeccHHhcCCcchHHHHHHHHHhCCeeEEEeCCcceEEeCCHHHHHHHHHhhhhh
Confidence 33444555566666788999999999999988755567889999999999999999999999999999999999999999
Q ss_pred cccCCccccccccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHH
Q 040102 98 FCDRPISAAVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKEL 177 (308)
Q Consensus 98 f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~ 177 (308)
|++||.......+..++++++++.+|+.|+++||++..++|+.++++.+.+++ +++..+++.|.+ ..+.++|+.+.+
T Consensus 101 f~~r~~~~~~~~~~~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~~-~~~~~~~~~l~~--~~~~~v~~~~~~ 177 (516)
T PLN02183 101 FSNRPANIAISYLTYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRAESWASVR-DEVDSMVRSVSS--NIGKPVNIGELI 177 (516)
T ss_pred hcCCCcccchhccccCCCceEeCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH-HHHHHHHHHHHh--cCCCcEeHHHHH
Confidence 99998644333333222356677789999999999645889999999999875 688999999865 336789999999
Q ss_pred HHHHHHHHHHHHhcCcccCCchhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 040102 178 IRLTNNVVSRMTMGQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEH 257 (308)
Q Consensus 178 ~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~ 257 (308)
.++++|+|++++||.+++. ..+++.+.+..+..........+++|++.++.+.+..++..+..+.+++++.++|+++
T Consensus 178 ~~~~~~vi~~~~fG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 254 (516)
T PLN02183 178 FTLTRNITYRAAFGSSSNE---GQDEFIKILQEFSKLFGAFNVADFIPWLGWIDPQGLNKRLVKARKSLDGFIDDIIDDH 254 (516)
T ss_pred HHHHHHHHHhHhhcCcccc---hHHHHHHHHHHHHHHhCCccHHHhcchhHhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998743 3345666666555544433345677877654233345677778888999999999888
Q ss_pred HHHhhhhhc-cCCCCCCCCHHHHHhhccccc---------cccCCCCHHHHHHHHHHHhcC
Q 040102 258 QEARKINKE-TGKDYAPMDLLDMLLDISEDE---------SSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 258 ~~~~~~~~~-~~~~~~~~d~l~~ll~~~~~~---------~~~~~lt~~~i~~~~~~l~~A 308 (308)
+++....+. ..+....+|+++.||+..+++ .++..+++++|.+++.++++|
T Consensus 255 ~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~A 315 (516)
T PLN02183 255 IQKRKNQNADNDSEEAETDMVDDLLAFYSEEAKVNESDDLQNSIKLTRDNIKAIIMDVMFG 315 (516)
T ss_pred HHhhcccccccccccccccHHHHHHHhhhccccccccccccccCCCCHHHHHHHHHHHHHc
Confidence 755320000 000013469999999864321 012259999999999999886
No 6
>PLN03112 cytochrome P450 family protein; Provisional
Probab=100.00 E-value=4.3e-35 Score=278.04 Aligned_cols=276 Identities=34% Similarity=0.577 Sum_probs=211.3
Q ss_pred cCCCCCCCCCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCcccccc
Q 040102 29 KTTSSLPPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAVD 108 (308)
Q Consensus 29 ~~~~~~pPgP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~~ 108 (308)
++..++||||+++|++||++++..+++..+.+|.++||+++++++|++|+|+++||+++++|+++++..|++||......
T Consensus 28 ~~~~~~ppgp~~~pl~G~~~~~~~~~~~~~~~~~~kyG~v~~~~~g~~~~v~v~dpe~~~~vl~~~~~~f~~~~~~~~~~ 107 (514)
T PLN03112 28 RKSLRLPPGPPRWPIVGNLLQLGPLPHRDLASLCKKYGPLVYLRLGSVDAITTDDPELIREILLRQDDVFASRPRTLAAV 107 (514)
T ss_pred cCCCCCccCCCCCCeeeeHHhcCCchHHHHHHHHHHhCCeEEEEecCccEEEECCHHHHHHHHHhCCcccccCCCcccce
Confidence 45668899999999999999887678899999999999999999999999999999999999999999999988643322
Q ss_pred ccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHH
Q 040102 109 YLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRM 188 (308)
Q Consensus 109 ~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~ 188 (308)
....+.++++++.+|+.|+.+||++..++|+.++++.+.+.+.++++.+++.+.+....+.++|+.+.+.++++++|+++
T Consensus 108 ~~~~g~~~~~~~~~g~~wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~lv~~l~~~~~~~~~vd~~~~~~~~~~~vi~~~ 187 (514)
T PLN03112 108 HLAYGCGDVALAPLGPHWKRMRRICMEHLLTTKRLESFAKHRAEEARHLIQDVWEAAQTGKPVNLREVLGAFSMNNVTRM 187 (514)
T ss_pred eeccCCCceEeCCCCHHHHHHHHHHHHHhcCHHHHHHhhHHHHHHHHHHHHHHHHhhccCCeeeHHHHHHHHHHHHHHHH
Confidence 22222234556678999999999976578999999999999999999999988764334678999999999999999999
Q ss_pred HhcCcccCCc----hhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 040102 189 TMGQICSIND----KEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKIN 264 (308)
Q Consensus 189 ~fG~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 264 (308)
+||.++.... .+..++.+++.............+++|+++++.+.+..++.++..+.+.++++++++++++..+
T Consensus 188 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-- 265 (514)
T PLN03112 188 LLGKQYFGAESAGPKEAMEFMHITHELFRLLGVIYLGDYLPAWRWLDPYGCEKKMREVEKRVDEFHDKIIDEHRRARS-- 265 (514)
T ss_pred HcCCccccccccchHHHHHHHHHHHHHHHHcCCCcHHHhChHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Confidence 9999873211 1224566666655544332334566787666433334566777888899999999998876532
Q ss_pred hccCCCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 265 KETGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 265 ~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
.........|+++.|+++.++++ +..+++++|.+++.++++|
T Consensus 266 -~~~~~~~~~d~l~~ll~~~~~~~-~~~l~~~~i~~~~~~~~~A 307 (514)
T PLN03112 266 -GKLPGGKDMDFVDVLLSLPGENG-KEHMDDVEIKALMQDMIAA 307 (514)
T ss_pred -ccccCCccchHHHHHHHhhcccc-ccCCCHHHHHHHHHHHhcc
Confidence 11111234699999998754322 2259999999999999886
No 7
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=100.00 E-value=1e-34 Score=274.33 Aligned_cols=272 Identities=33% Similarity=0.624 Sum_probs=211.5
Q ss_pred CCCCCCCCCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCccccccc
Q 040102 30 TTSSLPPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAVDY 109 (308)
Q Consensus 30 ~~~~~pPgP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~~~ 109 (308)
+..++||||+++|++||++++...++..+.+|.++||+++++|+|++|+|+++||++++++|++++..|++||.......
T Consensus 28 ~~~~~pPgp~~~Pl~G~l~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~vl~~~~~~f~~r~~~~~~~~ 107 (504)
T PLN00110 28 PSRKLPPGPRGWPLLGALPLLGNMPHVALAKMAKRYGPVMFLKMGTNSMVVASTPEAARAFLKTLDINFSNRPPNAGATH 107 (504)
T ss_pred ccCCCcccCCCCCeeechhhcCCchHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcchhhcCCCCccchhh
Confidence 45678999999999999988866678999999999999999999999999999999999999999999999986543322
Q ss_pred cccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHH
Q 040102 110 LTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMT 189 (308)
Q Consensus 110 ~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~ 189 (308)
...+.++++++.+|+.||++||+++.+.|+.++++.+.+.+.+++..+++.+.+...++.++|+.+.+..+++|+|++++
T Consensus 108 ~~~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~i~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~vi~~~~ 187 (504)
T PLN00110 108 LAYGAQDMVFADYGPRWKLLRKLSNLHMLGGKALEDWSQVRTVELGHMLRAMLELSQRGEPVVVPEMLTFSMANMIGQVI 187 (504)
T ss_pred hccCCCceeeCCCCHHHHHHHHHHHHHhCCHHHHHHhhHHHHHHHHHHHHHHHHhccCCCcEeHHHHHHHHHHHHHHHHH
Confidence 22223346677789999999999974579999999999999999999999997654456789999999999999999999
Q ss_pred hcCcccC-CchhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 040102 190 MGQICSI-NDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETG 268 (308)
Q Consensus 190 fG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~ 268 (308)
||.++.. .+.+..++.+++.......+...+.+++|++.|+..++..++..+..+.+++++.++++++++... .
T Consensus 188 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~- 262 (504)
T PLN00110 188 LSRRVFETKGSESNEFKDMVVELMTTAGYFNIGDFIPSIAWMDIQGIERGMKHLHKKFDKLLTRMIEEHTASAH----E- 262 (504)
T ss_pred hCCcccccCchhHHHHHHHHHHHHHHhccccHHHHcchHhhhCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcc----c-
Confidence 9998622 112335677777766554433334467787766433344566667788888888888888765421 1
Q ss_pred CCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 269 KDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 269 ~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
. ....|+++.|++..++.+ +..+++++|.+++.++++|
T Consensus 263 ~-~~~~d~l~~ll~~~~~~~-~~~l~~~~i~~~~~~~~~A 300 (504)
T PLN00110 263 R-KGNPDFLDVVMANQENST-GEKLTLTNIKALLLNLFTA 300 (504)
T ss_pred c-ccCCChhhHHhhcccccC-CCCCCHHHHHHHHHhhhcc
Confidence 1 134699999997653322 2369999999999999876
No 8
>PLN00168 Cytochrome P450; Provisional
Probab=100.00 E-value=4.1e-34 Score=271.46 Aligned_cols=301 Identities=19% Similarity=0.301 Sum_probs=209.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhc----cCCCCCCCCCCCCCeeeecccCC---CCchHHHHHHHHhcCCeeEEecCCcCE
Q 040102 6 GYIVLFLVWLVSTILVRSIFRRS----KTTSSLPPSPMALPIIGHLHLLA---PIPHQALHKLSIRYGPLIHLFLGSVPC 78 (308)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~pPgP~~~PllGnl~~l~---~~~~~~~~~~~~~yG~i~~~~~g~~~~ 78 (308)
+|++.+.+++..+++++++++.. ++..++||||+++|++||++++. ..++..+.+|+++||++|++++|+.|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpPgp~~~pl~G~l~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~ 83 (519)
T PLN00168 4 TQLLLLAALLLLPLLLLLLGKHGGRGGKKGRRLPPGPPAVPLLGSLVWLTNSSADVEPLLRRLIARYGPVVSLRVGSRLS 83 (519)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCcCCCCCcccccHHhhccccccHHHHHHHHHHHhCCeEEEEcCCccE
Confidence 44444444443344444444322 23567899999999999998663 346789999999999999999999999
Q ss_pred EEecCHHHHHHHHHhcccccccCCccccccccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHH
Q 040102 79 IVACSPETAKEILKTHETSFCDRPISAAVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFM 158 (308)
Q Consensus 79 vvi~d~e~~~evl~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~ 158 (308)
||++||++++++|++++..|++||.......+..++..++++++|+.||++||.+..++|+.++++.+.+.+.++++.++
T Consensus 84 vvv~dpe~~~~il~~~~~~f~~rp~~~~~~~~~~~~~~~~~~~~G~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~ 163 (519)
T PLN00168 84 VFVADRRLAHAALVERGAALADRPAVASSRLLGESDNTITRSSYGPVWRLLRRNLVAETLHPSRVRLFAPARAWVRRVLV 163 (519)
T ss_pred EEECCHHHHHHHHHhcCCccccCCcccchhhhccCCCceeCCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999875433333222112223368999999998544689999999999999999999999
Q ss_pred HHHHHhccCCCceehHHHHHHHHHHHHHHHHhcCcccCCchhHHHHHHHHHHHHHHh-CCCCccccccccccccccchHH
Q 040102 159 QLMLKKAKASEAVDVGKELIRLTNNVVSRMTMGQICSINDKEADEVRKLVQETAELT-GKFNLQDYIWFCKNIDLQGFGK 237 (308)
Q Consensus 159 ~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~l~~~~~~~~~~ 237 (308)
+.|.+....+.++|+.+.+..+++++|+.++||.+++. ...+.+........... ....+.+++|++.+....+..+
T Consensus 164 ~~l~~~~~~~~~v~~~~~~~~~~~~ii~~~~fG~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~ 241 (519)
T PLN00168 164 DKLRREAEDAAAPRVVETFQYAMFCLLVLMCFGERLDE--PAVRAIAAAQRDWLLYVSKKMSVFAFFPAVTKHLFRGRLQ 241 (519)
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCCcCh--hhHHHHHHHHHHHHHHhcCCCCHHHhCcchhhhhhhhHHH
Confidence 99987543345789999999999999999999998843 11223333333222222 1223456677653321222234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccC--C---CCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 238 RLKEVRRKFDDMMERILKEHQEARKINKETG--K---DYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 238 ~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~--~---~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
+..+..+.+++++.++|+++++.....+..+ . .....|+++.|++....++++..+|+++|++++.++++|
T Consensus 242 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 317 (519)
T PLN00168 242 KALALRRRQKELFVPLIDARREYKNHLGQGGEPPKKETTFEHSYVDTLLDIRLPEDGDRALTDDEIVNLCSEFLNA 317 (519)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCccccccccccccHHHHHHhhhccccccCCCCHHHHHHHHHHHHHh
Confidence 5667788899999999998876431000000 0 001469999999865322212369999999999999876
No 9
>PLN02966 cytochrome P450 83A1
Probab=100.00 E-value=1.2e-33 Score=267.20 Aligned_cols=281 Identities=30% Similarity=0.543 Sum_probs=204.4
Q ss_pred HHHHHhhccCCCCCCCCCCCCCeeeecccC-CCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccc
Q 040102 21 VRSIFRRSKTTSSLPPSPMALPIIGHLHLL-APIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFC 99 (308)
Q Consensus 21 ~~~~~~~~~~~~~~pPgP~~~PllGnl~~l-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~ 99 (308)
.+|.|..++ ..++||||+++|++||++++ ..+++..+.+|.++||+++++++|++|+|+++||+++++|+.+++..|.
T Consensus 18 ~~~~~~~~~-~~~~ppgp~~~p~~G~l~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~p~~i~~vl~~~~~~~~ 96 (502)
T PLN02966 18 FLYQKPKTK-RYKLPPGPSPLPVIGNLLQLQKLNPQRFFAGWAKKYGPILSYRIGSRTMVVISSAELAKELLKTQDVNFA 96 (502)
T ss_pred HHHhccccC-CCCCCcCCCCCCeeccHHhcCCCChhHHHHHHHHHhCCeEEEecCCCcEEEECCHHHHHHHHHhCccccc
Confidence 334443333 34679999999999999988 4568899999999999999999999999999999999999999888898
Q ss_pred cCCccccccccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHH
Q 040102 100 DRPISAAVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIR 179 (308)
Q Consensus 100 ~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~ 179 (308)
++|..........+.+++.+..+|+.|+.+||++..++|++++++.+.+.+.+++.++++.|.+.+..++++|+.+.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vdl~~~~~~ 176 (502)
T PLN02966 97 DRPPHRGHEFISYGRRDMALNHYTPYYREIRKMGMNHLFSPTRVATFKHVREEEARRMMDKINKAADKSEVVDISELMLT 176 (502)
T ss_pred CCCCCccceeeccCcceeeeCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeHHHHHHH
Confidence 88743332222222233445567999999999954589999999999999999999999999765444668999999999
Q ss_pred HHHHHHHHHHhcCcccCCchhHHHHHHHHHHHHHHhCCCCcccccccccccc-ccchHHHHHHHHHHHHHHHHHHHHHHH
Q 040102 180 LTNNVVSRMTMGQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNID-LQGFGKRLKEVRRKFDDMMERILKEHQ 258 (308)
Q Consensus 180 ~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~-~~~~~~~~~~~~~~~~~~~~~ii~~~~ 258 (308)
+|+|+|+.++||.+++..+++..++.+++.......+.....+++|+++++. .+++.+...+..+...+++.+++.++.
T Consensus 177 ~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 256 (502)
T PLN02966 177 FTNSVVCRQAFGKKYNEDGEEMKRFIKILYGTQSVLGKIFFSDFFPYCGFLDDLSGLTAYMKECFERQDTYIQEVVNETL 256 (502)
T ss_pred HHHHHHHHHHhCCccCccchHHHHHHHHHHHHHHHhCcccHHHhhchhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999885422223445555544443433333445566543321 122333444556677777888877765
Q ss_pred HHhhhhhccCCCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 259 EARKINKETGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 259 ~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
+... . . .+..|+++.|++..++++.+..+++++|++++.++++|
T Consensus 257 ~~~~----~-~-~~~~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~l~~A 300 (502)
T PLN02966 257 DPKR----V-K-PETESMIDLLMEIYKEQPFASEFTVDNVKAVILDIVVA 300 (502)
T ss_pred hccc----c-c-cccccHHHHHHHHHhccCcCCCCCHHHHHHHHHHHHhc
Confidence 4321 1 1 13469999999876432112359999999999999886
No 10
>PLN02655 ent-kaurene oxidase
Probab=100.00 E-value=1.2e-33 Score=264.95 Aligned_cols=262 Identities=22% Similarity=0.300 Sum_probs=198.2
Q ss_pred CCCCCCCCeeeecccCC-CCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCccccccccccC
Q 040102 35 PPSPMALPIIGHLHLLA-PIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAVDYLTYG 113 (308)
Q Consensus 35 pPgP~~~PllGnl~~l~-~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~~~~~~~ 113 (308)
||||+++|++||++++. ++++..+.+|.++||++|++++|++++|+|+||++++++|++++..|++|+.......+..+
T Consensus 1 ppgp~~lP~iG~l~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~k~il~~~~~~f~~r~~~~~~~~~~~~ 80 (466)
T PLN02655 1 VPAVPGLPVIGNLLQLKEKKPHRTFTKWSEIYGPIYTIRTGASSVVVLNSTEVAKEAMVTKFSSISTRKLSKALTVLTRD 80 (466)
T ss_pred CcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEECCEeEEEeCCHHHHHHHHHhcCchhcCCChhhHHHHHhcC
Confidence 78999999999999984 56889999999999999999999999999999999999999999999999755444434332
Q ss_pred CcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhcc--CCCceehHHHHHHHHHHHHHHHHhc
Q 040102 114 SADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAK--ASEAVDVGKELIRLTNNVVSRMTMG 191 (308)
Q Consensus 114 ~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~--~~~~vd~~~~~~~~t~~vi~~~~fG 191 (308)
+..++++++|+.||.+||.+..++|+.+.++.+.++++++++.+++.+.+..+ .++++|+.+.+.++|+|+++.++||
T Consensus 81 ~~~~~~~~~g~~wr~~Rr~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG 160 (466)
T PLN02655 81 KSMVATSDYGDFHKMVKRYVMNNLLGANAQKRFRDTRDMLIENMLSGLHALVKDDPHSPVNFRDVFENELFGLSLIQALG 160 (466)
T ss_pred CCceeeCCCcHHHHHHHHHHHHHhcCchHHHHhHHHHHHHHHHHHHHHHhhccccCCCceeHHHHHHHHHHHHHHHHHhc
Confidence 23344555699999999988767899888999999999999999999876433 3568999999999999999999999
Q ss_pred CcccCCc-hh-------HHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040102 192 QICSIND-KE-------ADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKI 263 (308)
Q Consensus 192 ~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 263 (308)
.+++..+ .+ .+.+.+.+...........+.+++|+++|+....+.+...+....+++++.+++++++++.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 239 (466)
T PLN02655 161 EDVESVYVEELGTEISKEEIFDVLVHDMMMCAIEVDWRDFFPYLSWIPNKSFETRVQTTEFRRTAVMKALIKQQKKRIA- 239 (466)
T ss_pred cccccccccccccchhhHHHHHHHHHHHHHHhCCcchhhhhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Confidence 9875321 11 12233333444333332234567887766532223444444455567888888888876542
Q ss_pred hhccCCCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 264 NKETGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 264 ~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
. + ..+.|+++.|++... .+|+++|++++.++++|
T Consensus 240 ---~-~-~~~~d~l~~ll~~~~------~ls~~~i~~~~~~~~~a 273 (466)
T PLN02655 240 ---R-G-EERDCYLDFLLSEAT------HLTDEQLMMLVWEPIIE 273 (466)
T ss_pred ---C-C-CCcccHHHHHHhccC------CCCHHHHHHHHHHHHHH
Confidence 2 2 235699999997642 59999999999999876
No 11
>PLN03018 homomethionine N-hydroxylase
Probab=100.00 E-value=7.8e-32 Score=255.83 Aligned_cols=274 Identities=22% Similarity=0.305 Sum_probs=191.0
Q ss_pred CCCCCCCCCCCCeeeecccCC-CCch-HHHHHHHHhc-CCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCccccc
Q 040102 31 TSSLPPSPMALPIIGHLHLLA-PIPH-QALHKLSIRY-GPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAV 107 (308)
Q Consensus 31 ~~~~pPgP~~~PllGnl~~l~-~~~~-~~~~~~~~~y-G~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~ 107 (308)
..++||||+++|++||++++. ..++ ..++++.++| |++|++|+|++|+|+|+|||+++++|++++..|++||.....
T Consensus 38 ~~~~PPgp~~~P~iGnl~~l~~~~~~~~~~~~~~~~~~g~i~~~~lg~~~~vvvsdpe~ikevl~~~~~~f~~rp~~~~~ 117 (534)
T PLN03018 38 SRQLPPGPPGWPILGNLPELIMTRPRSKYFHLAMKELKTDIACFNFAGTHTITINSDEIAREAFRERDADLADRPQLSIM 117 (534)
T ss_pred CCCCCcCCCCCCeeccHHHhccCCCcchhHHHHHHHhCCCeEEEEeCCccEEEECCHHHHHHHHHhCcHhhcCCCCchhh
Confidence 345799999999999999873 3333 3466666665 799999999999999999999999999999999999865554
Q ss_pred cccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHH
Q 040102 108 DYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSR 187 (308)
Q Consensus 108 ~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~ 187 (308)
..+..++.+++++++|+.||.+||+++..+++.+..+.+.++++.++.++++.+.+.++.+.++|+.+++.++++|+|++
T Consensus 118 ~~l~~~~~~i~~~~~G~~Wk~~Rk~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~ 197 (534)
T PLN03018 118 ETIGDNYKSMGTSPYGEQFMKMKKVITTEIMSVKTLNMLEAARTIEADNLIAYIHSMYQRSETVDVRELSRVYGYAVTMR 197 (534)
T ss_pred hhhccCCCceEecCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeHHHHHHHHHHHHHHH
Confidence 44433333566766799999999999743345555566667777789999999986544456799999999999999999
Q ss_pred HHhcCcccCCc------hh-HHHHHHHHHHHHH---HhCCCCcccccc-ccccccccchHHHHHHHHHHHHHHHHHHHHH
Q 040102 188 MTMGQICSIND------KE-ADEVRKLVQETAE---LTGKFNLQDYIW-FCKNIDLQGFGKRLKEVRRKFDDMMERILKE 256 (308)
Q Consensus 188 ~~fG~~~~~~~------~~-~~~~~~~~~~~~~---~~~~~~~~~~~P-~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~ 256 (308)
++||.++...+ .. ...+......+.. ........+++| |++++...+..++.......++++++++|++
T Consensus 198 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 277 (534)
T PLN03018 198 MLFGRRHVTKENVFSDDGRLGKAEKHHLEVIFNTLNCLPGFSPVDYVERWLRGWNIDGQEERAKVNVNLVRSYNNPIIDE 277 (534)
T ss_pred HHhCCccccccccccccccchhHHHHHHHHHHHHHHHhCCCcHHHHhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999874211 11 1112212222211 121122334555 5543222344555666677889999999999
Q ss_pred HHHHhhhhhccCCCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 257 HQEARKINKETGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
+++..+ + +++.....|+++.||+..++++ ...+|+++|++++.++++|
T Consensus 278 ~~~~~~--~-~~~~~~~~d~l~~ll~~~~~~~-~~~ls~~~i~~~~~~~~~a 325 (534)
T PLN03018 278 RVELWR--E-KGGKAAVEDWLDTFITLKDQNG-KYLVTPDEIKAQCVEFCIA 325 (534)
T ss_pred HHHHhh--h-ccCCCCcccHHHHHHHhhcccC-CCCCCHHHHHHHHHHHHHH
Confidence 876532 1 1111134699999998764321 1149999999999999876
No 12
>PLN02290 cytokinin trans-hydroxylase
Probab=100.00 E-value=2.6e-32 Score=259.14 Aligned_cols=263 Identities=16% Similarity=0.227 Sum_probs=189.4
Q ss_pred CCCCCCCCCCeeeecccCCC-------------------CchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHh
Q 040102 33 SLPPSPMALPIIGHLHLLAP-------------------IPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKT 93 (308)
Q Consensus 33 ~~pPgP~~~PllGnl~~l~~-------------------~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~ 93 (308)
+.||||+++|++||++++.. .....+.+|.++||++|++|+|+.|+||++||++++++|++
T Consensus 42 ~~~PGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~v~~il~~ 121 (516)
T PLN02290 42 QGVRGPKPRPLTGNILDVSALVSQSTSKDMDSIHHDIVGRLLPHYVAWSKQYGKRFIYWNGTEPRLCLTETELIKELLTK 121 (516)
T ss_pred cCCCCCCCCcCCCCHHHHHHHHHHhhcCCCCCCCcccccccchHHHHHHHHhCCeEEEccCCccEEEECCHHHHHHHHhc
Confidence 44899999999999988631 12235789999999999999999999999999999999998
Q ss_pred cccccccCCccccc--cccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCC-Cc
Q 040102 94 HETSFCDRPISAAV--DYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKAS-EA 170 (308)
Q Consensus 94 ~~~~f~~Rp~~~~~--~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~-~~ 170 (308)
+ ..|++|+..... ... . ++++ +.++|+.||++||+++ +.|+.++++.+.+.+.++++.+++.|.+.++.+ .+
T Consensus 122 ~-~~~~~r~~~~~~~~~~~-~-g~~l-~~~~g~~Wk~~Rk~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~ 196 (516)
T PLN02290 122 Y-NTVTGKSWLQQQGTKHF-I-GRGL-LMANGADWYHQRHIAA-PAFMGDRLKGYAGHMVECTKQMLQSLQKAVESGQTE 196 (516)
T ss_pred C-CCCCCCcchhhhHHHHH-h-cCCc-cccCchHHHHHHhhcc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCce
Confidence 7 557777642211 111 1 2344 4457999999999986 889999999999999999999999998754333 58
Q ss_pred eehHHHHHHHHHHHHHHHHhcCcccCCchhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHH
Q 040102 171 VDVGKELIRLTNNVVSRMTMGQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMM 250 (308)
Q Consensus 171 vd~~~~~~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~ 250 (308)
+|+.+.+.++++|+|++++||.+++.. +++.+.++..............+|+++++ +.+..+++.+..+.+.+++
T Consensus 197 vd~~~~~~~~~~~vi~~~~fG~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-p~~~~~~~~~~~~~~~~~~ 271 (516)
T PLN02290 197 VEIGEYMTRLTADIISRTEFDSSYEKG----KQIFHLLTVLQRLCAQATRHLCFPGSRFF-PSKYNREIKSLKGEVERLL 271 (516)
T ss_pred EEhHHHHHHHHHHHHHHHHcCCccccc----hHHHHHHHHHHHHHHHhhhhhcCchhhhC-CChhHHHHHHHHHHHHHHH
Confidence 999999999999999999999987431 22333333332222111112234554444 2334456666778899999
Q ss_pred HHHHHHHHHHhhhhhccCCCCCCCCHHHHHhhccccc-cccCCCCHHHHHHHHHHHhcC
Q 040102 251 ERILKEHQEARKINKETGKDYAPMDLLDMLLDISEDE-SSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 251 ~~ii~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~-~~~~~lt~~~i~~~~~~l~~A 308 (308)
.++|+++++..+ ....+ ...+|+++.+++..++. +++..+++++|.+++.++++|
T Consensus 272 ~~~i~~~~~~~~--~~~~~-~~~~d~l~~ll~~~~~~~~~~~~l~~~~i~~~~~~~~~A 327 (516)
T PLN02290 272 MEIIQSRRDCVE--IGRSS-SYGDDLLGMLLNEMEKKRSNGFNLNLQLIMDECKTFFFA 327 (516)
T ss_pred HHHHHHHHHHhh--cccCC-CCCCCHHHHHHHhccccCCCCCCCCHHHHHHHHHHHHhh
Confidence 999999876543 00001 13579999999865321 112258999999999999886
No 13
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.4e-32 Score=249.35 Aligned_cols=276 Identities=20% Similarity=0.234 Sum_probs=187.5
Q ss_pred HHHHHHHHh--hccCCCCCCCCCCCCCeeeecccCC--CCch-HHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHH
Q 040102 18 TILVRSIFR--RSKTTSSLPPSPMALPIIGHLHLLA--PIPH-QALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILK 92 (308)
Q Consensus 18 ~~~~~~~~~--~~~~~~~~pPgP~~~PllGnl~~l~--~~~~-~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~ 92 (308)
+++..|.|+ .|++++ .|||+|+|++||+..+. +.+. .....|.+. ||+++++.|.+|.++|+|||+||+|++
T Consensus 16 l~y~~~~~~~~yw~rrG--i~~~~p~p~~Gn~~~~~~~~~~~~~~~~~~~~~-~~~~G~y~~~~p~l~v~D~elik~I~i 92 (499)
T KOG0158|consen 16 LLYLWLRWTYSYWRRRG--IPGPKPLPFLGNLPGMLKRERPGDLLLDIYTKY-RPVVGIYEGRQPALLVSDPELIKEILI 92 (499)
T ss_pred HHHHHHHhhhhhhccCC--CCCCCCCCcEecHHHHHhccCcHHHHHHHHhcC-CCEEEEEecCCcceEecCHHHHHHHHH
Confidence 434445554 455554 78999999999998872 2233 344455554 999999999999999999999999999
Q ss_pred hcccccccCCccccccccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCcee
Q 040102 93 THETSFCDRPISAAVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVD 172 (308)
Q Consensus 93 ~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd 172 (308)
|++++|.+|......+.-.......+++..|+.||++|..++ |+|++++++.+.+++++.+.++++++.++...+..++
T Consensus 93 k~F~~F~~r~~~~~~d~~~~l~~~~Lf~~~g~~WK~lR~~ls-P~Fts~kmk~m~~t~~~~~~~l~~~l~~~~~~~~~~~ 171 (499)
T KOG0158|consen 93 KDFDNFYNRKRPIYGDPEDPLSALNLFFLRGERWKRLRTKLS-PTFTSGKLKKMFPTMEEVGDELVRHLRRKSEGGQEGE 171 (499)
T ss_pred HhCccCcCCCCCCcCCCCCcccccCchhccCchHHHHHHhhc-cccchhhHHHHHHHHHHHHHHHHHHHHHhhcccCCcc
Confidence 999999995411122221001113456668999999999996 9999999999999999999999999998543235789
Q ss_pred hHHHHHHHHHHHHHHHHhcCcccCCchhHHHHHHHHHHHHHH-hCCC----CccccccccccccccchHHHHHHHHHHHH
Q 040102 173 VGKELIRLTNNVVSRMTMGQICSINDKEADEVRKLVQETAEL-TGKF----NLQDYIWFCKNIDLQGFGKRLKEVRRKFD 247 (308)
Q Consensus 173 ~~~~~~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~P~l~~~~~~~~~~~~~~~~~~~~ 247 (308)
+.+.+.+||.|||++++||.+.++..+...+|.......... .... .+...+|.+... + .......+..+.+.
T Consensus 172 ~~dl~~~yT~DVI~~~AfG~~~~s~~d~~~~F~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~-l-~~~~~~~~~~~~~~ 249 (499)
T KOG0158|consen 172 IKDLCARYTTDVIGSCAFGLDANSLRDPKAEFRRMGRRAFFLSRGLFPLKFMLIFLFPKLALP-L-RVKLFPEDVTDFFR 249 (499)
T ss_pred HHHHHHHHHHHHHhHhhcccchhhhcCchHHHHHhhHHHHHHhhccchHhHhHHHHhHHHHHh-h-hcccChHHHHHHHH
Confidence 999999999999999999999965433345666544443333 1111 112222332210 0 01112223333444
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCCCCCCHHHHHhhccccc--cc-cC-CCCHHHHHHHHHHHhcC
Q 040102 248 DMMERILKEHQEARKINKETGKDYAPMDLLDMLLDISEDE--SS-EI-KLTRENIKAFILDIFAA 308 (308)
Q Consensus 248 ~~~~~ii~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~--~~-~~-~lt~~~i~~~~~~l~~A 308 (308)
+.+...++.| . +. + ..++||+|.||+++.++ +. .. .+|.++|+++|+.+++|
T Consensus 250 ~~v~~~v~~R----~---~~-~-~~r~Dfi~lll~~~~~~~~~~~~~~~lt~dei~aQafvFl~A 305 (499)
T KOG0158|consen 250 KLVNSRVEQR----E---KE-N-IERNDFIDLLLDARASDFAKSKSHKALTDDEIAAQAFVFLLA 305 (499)
T ss_pred HHHHHHHHHH----H---hc-C-CCCchHHHHHHHhhcccccccccccccCHHHHHHHHHHHHHh
Confidence 4444444444 2 12 1 36889999999998531 11 11 59999999999999987
No 14
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=100.00 E-value=3.2e-31 Score=250.92 Aligned_cols=284 Identities=21% Similarity=0.362 Sum_probs=194.7
Q ss_pred HHHHHHHHhhc-cCCCCCCCCCCCCCeeeecccCCC-CchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcc
Q 040102 18 TILVRSIFRRS-KTTSSLPPSPMALPIIGHLHLLAP-IPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHE 95 (308)
Q Consensus 18 ~~~~~~~~~~~-~~~~~~pPgP~~~PllGnl~~l~~-~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~ 95 (308)
+++..|+.++. .++.+.||||+++|++||++++.. ..+..+.+|.++||+++++|+|++|+|+++||+.+++++++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~pPgp~~~p~~g~l~~~~~~~~~~~~~~~~~~yG~v~~i~~g~~~~v~v~dpe~i~~il~~~~ 93 (503)
T PLN02394 14 AIVLALLVSKLRGKKLKLPPGPAAVPIFGNWLQVGDDLNHRNLAEMAKKYGDVFLLRMGQRNLVVVSSPELAKEVLHTQG 93 (503)
T ss_pred HHHHHHHHHHHhcCcCCCCcCCCCCCeeeeHHhcCCCchhHHHHHHHHHhCCeEEEEcCCeeEEEeCCHHHHHHHHHhCC
Confidence 33444333333 455678999999999999988853 3578999999999999999999999999999999999999988
Q ss_pred cccccCCccccccccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhcc-CCCceehH
Q 040102 96 TSFCDRPISAAVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAK-ASEAVDVG 174 (308)
Q Consensus 96 ~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~-~~~~vd~~ 174 (308)
..|.+||.......+...+++++++.+|+.|+++||.+..+.|++++++.+.+.++++++++++.|.+... .+..+|+.
T Consensus 94 ~~~~~r~~~~~~~~~~g~~~~~l~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~i~~~v~~lv~~l~~~~~~~~~~v~~~ 173 (503)
T PLN02394 94 VEFGSRTRNVVFDIFTGKGQDMVFTVYGDHWRKMRRIMTVPFFTNKVVQQYRYGWEEEADLVVEDVRANPEAATEGVVIR 173 (503)
T ss_pred ccccCCCCcchHhHhccCCCceeecCCCHHHHHHHHHHHHHhcChHHHHHhhHHHHHHHHHHHHHHHHhhhccCCcEecH
Confidence 88998875444443332233566777899999999998658899999999999999999999999976432 24569999
Q ss_pred HHHHHHHHHHHHHHHhcCcccCCchh-HHHHHHHHHHHHHHhCC--CCccccccccccccccchHHHHHHHHHH-HHHHH
Q 040102 175 KELIRLTNNVVSRMTMGQICSINDKE-ADEVRKLVQETAELTGK--FNLQDYIWFCKNIDLQGFGKRLKEVRRK-FDDMM 250 (308)
Q Consensus 175 ~~~~~~t~~vi~~~~fG~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~P~l~~~~~~~~~~~~~~~~~~-~~~~~ 250 (308)
+.+.++++|++++++||.+++..++. ...+.....+....... ..+.+++|++... ..++.+........ .+.+.
T Consensus 174 ~~~~~~~~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 252 (503)
T PLN02394 174 RRLQLMMYNIMYRMMFDRRFESEDDPLFLKLKALNGERSRLAQSFEYNYGDFIPILRPF-LRGYLKICQDVKERRLALFK 252 (503)
T ss_pred HHHHHHHHHHHHHHHhCCCcccccchhHHHHHHHHHHHHHHhcccccchhhhchHHHHH-hhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998532111 12222222222222211 1223455554321 11222222222222 22234
Q ss_pred HHHHHHHHHHhhhhhccCCCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 251 ERILKEHQEARKINKETGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 251 ~~ii~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
+.+++++++..+ .........+|+++.|+++.+++ .+++++|.+++.++++|
T Consensus 253 ~~~i~~~~~~~~--~~~~~~~~~~d~l~~ll~~~~~~----~l~~~~i~~~~~~~~~A 304 (503)
T PLN02394 253 DYFVDERKKLMS--AKGMDKEGLKCAIDHILEAQKKG----EINEDNVLYIVENINVA 304 (503)
T ss_pred HHHHHHHHHHhh--hccCCcchhhhHHHHHHhccccC----CCCHHHHHHHHHHHHHh
Confidence 456777654321 00001013479999999876432 59999999999998776
No 15
>PTZ00404 cytochrome P450; Provisional
Probab=100.00 E-value=1.8e-31 Score=251.33 Aligned_cols=266 Identities=21% Similarity=0.341 Sum_probs=192.9
Q ss_pred cCCCCCCCCCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCcccccc
Q 040102 29 KTTSSLPPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAVD 108 (308)
Q Consensus 29 ~~~~~~pPgP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~~ 108 (308)
+.+.+.+|||+++|++||++++..+++..+.+|.++||+++++++|+.++|+++||+++++++.++...|.+||......
T Consensus 25 ~~~~~~~pgp~~~p~~G~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~~~ 104 (482)
T PTZ00404 25 KIHKNELKGPIPIPILGNLHQLGNLPHRDLTKMSKKYGGIFRIWFADLYTVVLSDPILIREMFVDNFDNFSDRPKIPSIK 104 (482)
T ss_pred hccCCCCCCCCCCCeeccHhhhcccHHHHHHHHHHHhCCeeEEEecCCCEEEECCHHHHHHHHHhcchhhcCCCCcceee
Confidence 34567789999999999998886678999999999999999999999999999999999999998888898888654332
Q ss_pred ccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHH
Q 040102 109 YLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRM 188 (308)
Q Consensus 109 ~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~ 188 (308)
.... +.++ ++.+|+.|+++||++. +.|++++++.+.+.+.++++.+++.|.+..+.+.++|+.+.+.++++|+|+++
T Consensus 105 ~~~~-~~~l-~~~~g~~w~~~Rk~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~ 181 (482)
T PTZ00404 105 HGTF-YHGI-VTSSGEYWKRNREIVG-KAMRKTNLKHIYDLLDDQVDVLIESMKKIESSGETFEPRYYLTKFTMSAMFKY 181 (482)
T ss_pred eecc-CCce-eccChHHHHHHHHHHH-HHHhhhccccHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHH
Confidence 2112 2344 4568999999999996 88999999999999999999999999764334667999999999999999999
Q ss_pred HhcCcccCCch----hHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 040102 189 TMGQICSINDK----EADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKIN 264 (308)
Q Consensus 189 ~fG~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 264 (308)
+||.+++..++ ...++.+.+..++.........+++|++... ...+.....+..+.+++++++.+++++++.+
T Consensus 182 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-- 258 (482)
T PTZ00404 182 IFNEDISFDEDIHNGKLAELMGPMEQVFKDLGSGSLFDVIEITQPL-YYQYLEHTDKNFKKIKKFIKEKYHEHLKTID-- 258 (482)
T ss_pred HhccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhhHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--
Confidence 99998743211 1245666666655544332222333333221 0111222344566777777777766654321
Q ss_pred hccCCCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 265 KETGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 265 ~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
. ...+|+++.|+++..+.. ..+.++|++++.++++|
T Consensus 259 ----~-~~~~dll~~ll~~~~~~~---~~~~~~i~~~~~~~~~A 294 (482)
T PTZ00404 259 ----P-EVPRDLLDLLIKEYGTNT---DDDILSILATILDFFLA 294 (482)
T ss_pred ----C-CCcccHHHHHHHHhccCC---cccHHHHHHHHHHHHHh
Confidence 1 235799999998753211 12334588899998876
No 16
>PLN02500 cytochrome P450 90B1
Probab=99.97 E-value=5.4e-30 Score=241.77 Aligned_cols=269 Identities=19% Similarity=0.190 Sum_probs=186.1
Q ss_pred HHHHHHHHHHHH-HHHhhc-cCCCCCCCCCCCCCeeeecccC-C----CCchHHHHHHHHhcCCeeEEecCCcCEEEecC
Q 040102 11 FLVWLVSTILVR-SIFRRS-KTTSSLPPSPMALPIIGHLHLL-A----PIPHQALHKLSIRYGPLIHLFLGSVPCIVACS 83 (308)
Q Consensus 11 ~~~~~~~~~~~~-~~~~~~-~~~~~~pPgP~~~PllGnl~~l-~----~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d 83 (308)
++.+++++++.+ ++.++. +++.++||||+++|++||++++ . ..++..+.+|.++||++|++++|++|+||++|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~PPgp~~~PiiGn~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~ 93 (490)
T PLN02500 14 LLPSILSLLLVFILTKRRPKQKRFNLPPGNMGWPFLGETIGYLKPYSATSIGEFMEQHISRYGKIYRSNLFGEPTIVSAD 93 (490)
T ss_pred HHHHHHHHHHHHHhCccccccCCCCCCCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhcccccccccCCCeEEecC
Confidence 333344333333 444333 3455789999999999998654 2 34667899999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccCCccccccccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhh-hhHHHHHHHHHHHHHHH
Q 040102 84 PETAKEILKTHETSFCDRPISAAVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQ-FIPIRSEEIWRFMQLML 162 (308)
Q Consensus 84 ~e~~~evl~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~-~~~~~~~~~~~l~~~l~ 162 (308)
|++++++|++++..|++++...... +. ++.++++ .+|+.||++||+++ +.|++.+++. +.+.+.+.+..+++.|.
T Consensus 94 p~~~~~vl~~~~~~f~~~~~~~~~~-~~-g~~~~~~-~~g~~wr~~Rk~~~-~~f~~~~l~~~~~~~~~~~~~~~~~~~~ 169 (490)
T PLN02500 94 AGLNRFILQNEGRLFECSYPRSIGG-IL-GKWSMLV-LVGDMHRDMRSISL-NFLSHARLRTHLLKEVERHTLLVLDSWK 169 (490)
T ss_pred HHHHHHHHhCCCCeEEeeCchHHHH-Hh-Ccccccc-cCCHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999988887653222222 22 2224444 57999999999996 8899998886 46677777777777654
Q ss_pred HhccCCCceehHHHHHHHHHHHHHHHHhcCcccCCchhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHH
Q 040102 163 KKAKASEAVDVGKELIRLTNNVVSRMTMGQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEV 242 (308)
Q Consensus 163 ~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~ 242 (308)
+ +.++|+.+.+.++++|+|++++||.+.+. .+..++.+.+.+....... ....+|. ...++..+.
T Consensus 170 ~----~~~vd~~~~~~~~~~~vi~~~~fg~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~p~-------~~~~~~~~~ 234 (490)
T PLN02500 170 E----NSTFSAQDEAKKFTFNLMAKHIMSMDPGE--EETEQLKKEYVTFMKGVVS--APLNFPG-------TAYRKALKS 234 (490)
T ss_pred C----CCCEEehHHHHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHhhhhc--chhcCCC-------cccHHHHHH
Confidence 3 45799999999999999999999998632 1123333333333222111 0111221 112455667
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 243 RRKFDDMMERILKEHQEARKINKETGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 243 ~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
.+.+++++.+++++++++.+ ..+......|+++.+++.. .+|+++|++++.++++|
T Consensus 235 ~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~d~l~~ll~~~-------~ls~~~i~~~~~~ll~A 290 (490)
T PLN02500 235 RATILKFIERKMEERIEKLK---EEDESVEEDDLLGWVLKHS-------NLSTEQILDLILSLLFA 290 (490)
T ss_pred HHHHHHHHHHHHHHHHHhhh---cccCCCCcchHHHHHHhcc-------CCCHHHHHHHHHHHHHh
Confidence 88899999999998876532 1101013469999999741 48999999999999876
No 17
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.97 E-value=2.1e-29 Score=237.86 Aligned_cols=287 Identities=11% Similarity=0.102 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCeeeecccCCCCc---hHHHHHHHHhcCCeeE---EecCCcCEEEec
Q 040102 9 VLFLVWLVSTILVRSIFRRSKTTSSLPPSPMALPIIGHLHLLAPIP---HQALHKLSIRYGPLIH---LFLGSVPCIVAC 82 (308)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~pPgP~~~PllGnl~~l~~~~---~~~~~~~~~~yG~i~~---~~~g~~~~vvi~ 82 (308)
|++..+++|+ .+..-|+++++. .|||+++|++||++++..+. ++.+.+...+||..++ +|+|+.|+|+++
T Consensus 11 ~~~~~~~~~~-~~~~~~~~~~~~---~p~p~~~pl~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~vvv~ 86 (500)
T PLN02169 11 VAFIFFLVCL-FTCFFIHKKPHG---QPILKNWPFLGMLPGMLHQIPRIYDWTVEVLEASNLTFYFKGPWLSGTDMLFTA 86 (500)
T ss_pred HHHHHHHHHH-HHHHHHHhccCC---CCCCCCCCcccchHHHHHccCcHHHHHHHHHHhCCCcEEEEeeccCCCCeEEEc
Confidence 3344445544 333344333332 58999999999998773222 2333343444886554 789999999999
Q ss_pred CHHHHHHHHHhcccccccCCccccccccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhh--hhHHHHHHHHHHHHH
Q 040102 83 SPETAKEILKTHETSFCDRPISAAVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQ--FIPIRSEEIWRFMQL 160 (308)
Q Consensus 83 d~e~~~evl~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~--~~~~~~~~~~~l~~~ 160 (308)
||+++++||+++...|.+++........ .+.|+++ ++|+.||.+||+++ |+|+.++++. +.+.++++++.+++.
T Consensus 87 dpe~i~~il~~~~~~~~k~~~~~~~~~~--~g~gl~~-~~g~~Wr~~Rk~l~-p~F~~~~~~~~~~~~~~~~~~~~l~~~ 162 (500)
T PLN02169 87 DPKNIHHILSSNFGNYPKGPEFKKIFDV--LGEGILT-VDFELWEDLRKSNH-ALFHNQDFIELSLSSNKSKLKEGLVPF 162 (500)
T ss_pred CHHHHHHHHhhCcccCCCcHHHHHHHHh--hcCcccc-cCcHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988888776532222222 1245555 57999999999996 8999988764 346777888889999
Q ss_pred HHHhccCCCceehHHHHHHHHHHHHHHHHhcCcccCCc-h-hHHHHHHHHHHHHHHhCCCCcccccccccc----ccccc
Q 040102 161 MLKKAKASEAVDVGKELIRLTNNVVSRMTMGQICSIND-K-EADEVRKLVQETAELTGKFNLQDYIWFCKN----IDLQG 234 (308)
Q Consensus 161 l~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~----~~~~~ 234 (308)
+.+.+.++.++|+.+.+.++|+|+|++++||.+.+..+ . ...++.++.+....... ..++.|++.+ +...+
T Consensus 163 l~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~~~~~~~~~~~~~ 239 (500)
T PLN02169 163 LDNAAHENIIIDLQDVFMRFMFDTSSILMTGYDPMSLSIEMLEVEFGEAADIGEEAIY---YRHFKPVILWRLQNWIGIG 239 (500)
T ss_pred HHHHHhcCCeEeHHHHHHHHHHHHHHhheeCCCccccCCCCCCCHHHHHHHHHHHHHH---hHHhccHHHHHHHHHhCCc
Confidence 87654446789999999999999999999999874322 1 12345555444333221 1223343221 11234
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCHHHHHhhccccc-cccCCCCHHHHHHHHHHHhcC
Q 040102 235 FGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPMDLLDMLLDISEDE-SSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~-~~~~~lt~~~i~~~~~~l~~A 308 (308)
..++..++.+.+++++.++|++++++.. +..+..+..+|+++.|++...+. +.+..+++++|++++.++++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~I~~r~~~~~--~~~~~~~~~~d~l~~ll~~~~~~~~~~~~~~~~~i~~~~~~~l~A 312 (500)
T PLN02169 240 LERKMRTALATVNRMFAKIISSRRKEEI--SRAETEPYSKDALTYYMNVDTSKYKLLKPKKDKFIRDVIFSLVLA 312 (500)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccCCCcCHHHHHHhccccccccccCCChHHHHHHHHHHHHh
Confidence 5677888999999999999999876421 00101012479999999875321 101258999999999999886
No 18
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=99.97 E-value=1.2e-29 Score=238.74 Aligned_cols=263 Identities=27% Similarity=0.389 Sum_probs=194.9
Q ss_pred CCCCCCCCCCCCeeeecccCC-C--CchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCccc-c
Q 040102 31 TSSLPPSPMALPIIGHLHLLA-P--IPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISA-A 106 (308)
Q Consensus 31 ~~~~pPgP~~~PllGnl~~l~-~--~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~-~ 106 (308)
....||||+++|++||++++. . .....+.++..+||++|+.|+|+.|+|+++||+.+++||.++...+..-+..+ .
T Consensus 33 ~~~~~~gp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~dp~~~~~Il~~~~~~~~k~~~~~~~ 112 (497)
T KOG0157|consen 33 KKKLPPGPPGWPLIGNLLEFLKPLEEILDFVTELLSRYGPIFKTWLGGKPTVVTTDPELIEEILKSSNENYPKGPDYPES 112 (497)
T ss_pred HhccCCCCCCCCcccchHHhhcchhHHHHHHHHHHHHcCchhhhhhcCeeEEEEcCHHHHHHHHhcCcccCCCchhHHHH
Confidence 456799999999999999883 2 45678899999999999999999999999999999999976555554444333 3
Q ss_pred ccccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHH
Q 040102 107 VDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVS 186 (308)
Q Consensus 107 ~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~ 186 (308)
..... |.|++++ +|+.|+++||+++ ++|+.+.++.+.+.+.+++..++..+..... +..+|+.++++++|+|+||
T Consensus 113 ~~~~l--G~gll~~-~g~~W~~~Rk~~~-~~f~~~~L~~~~~~~~~~~~~~~~~~~~~~~-~~~vd~~~~~~~~tld~i~ 187 (497)
T KOG0157|consen 113 LKPWL--GDGLLFS-DGEKWHKHRKLLT-PAFHFEILKSFVPVFIESSLILLLLLELAAS-GEEVDLQDLLKRLTLDIIC 187 (497)
T ss_pred HHHHh--cCccccC-CchHHHHHHhhcc-HhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCeEcHHHHHHHHHHHHHH
Confidence 33333 2356665 4999999999986 8999999999999999999998888877432 3339999999999999999
Q ss_pred HHHhcCcccCCc-hhHHHHHHHHHHHHHHhCCCCcccccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 040102 187 RMTMGQICSIND-KEADEVRKLVQETAELTGKFNLQDYIW-FCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKIN 264 (308)
Q Consensus 187 ~~~fG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 264 (308)
+++||......+ .+..++.++++........ +...| +..+++.-+..++..++.+.++++++++|++|+++..
T Consensus 188 ~~~~G~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~iI~~rr~~~~-- 262 (497)
T KOG0157|consen 188 KTAMGPESLDAEGPELFEYVQAFDDLTELISK---RINLPLGTKFLYGLKSERKLKKARKILHDFLEKIIRERREELE-- 262 (497)
T ss_pred HHhcCCccccccCCcccHHHHHHHHHHHHHHH---HHcCchhhhHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 999993331112 2234677776655444332 33445 4433322235788999999999999999999997754
Q ss_pred hccCC-CCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 265 KETGK-DYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 265 ~~~~~-~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
+.+.+ .....|+|+.+....+ ..+|+++|+++|.++++|
T Consensus 263 ~~~~~~~~~~~d~L~~~~~~~~-----~~l~~~~i~d~v~tf~fa 302 (497)
T KOG0157|consen 263 KEGSGEEKKRLDFLDTLLLEED-----KPLTDEDIRDEVDTFMFA 302 (497)
T ss_pred hcCCcccchhhhHHHHHHHhcc-----CCCCHHHHHHHHHHheee
Confidence 11101 0135688886332222 269999999999999987
No 19
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.97 E-value=6.8e-29 Score=232.65 Aligned_cols=268 Identities=20% Similarity=0.265 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCeeeecccCC-----CCchHHHHHHHHhcCCeeEEecCCcCEEEecC
Q 040102 9 VLFLVWLVSTILVRSIFRRSKTTSSLPPSPMALPIIGHLHLLA-----PIPHQALHKLSIRYGPLIHLFLGSVPCIVACS 83 (308)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~pPgP~~~PllGnl~~l~-----~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d 83 (308)
.+++++.++.++..|..+-..++.++||||.++|++||++++. ++++.++.+|.++||+++++++|++++|+++|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~lppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~l~~~~~vvv~~ 85 (472)
T PLN02987 6 FLLLLSSLAAIFFLLLRRTRYRRMRLPPGSLGLPLVGETLQLISAYKTENPEPFIDERVARYGSLFMTHLFGEPTVFSAD 85 (472)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCcCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhchhhhhhhcCCCeEEEeC
Confidence 3455555555555566544455667899999999999998862 45788899999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccCCccccccccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHH
Q 040102 84 PETAKEILKTHETSFCDRPISAAVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLK 163 (308)
Q Consensus 84 ~e~~~evl~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~ 163 (308)
|++++++|++++..|++++...+...+ ++++++++ +|+.||++||++. +.++.+.++.+. ..++.++++...+
T Consensus 86 pe~~~~il~~~~~~f~~~~~~~~~~~l--g~~~l~~~-~g~~wr~~R~~~~-~f~~~~~~~~~~---~~~~~~~~~~~~~ 158 (472)
T PLN02987 86 PETNRFILQNEGKLFECSYPGSISNLL--GKHSLLLM-KGNLHKKMHSLTM-SFANSSIIKDHL---LLDIDRLIRFNLD 158 (472)
T ss_pred HHHHHHHHhCCCceEEecCcHHHHHHh--Cccccccc-CcHHHHHHHHHHH-HhcChHHHHHHH---HHHHHHHHHHHHH
Confidence 999999999999999776532233323 22355554 7999999999975 544445555433 2233444333322
Q ss_pred hccCCCceehHHHHHHHHHHHHHHHHhcCcccCCchhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHH
Q 040102 164 KAKASEAVDVGKELIRLTNNVVSRMTMGQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVR 243 (308)
Q Consensus 164 ~~~~~~~vd~~~~~~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~ 243 (308)
.. ++++++.+++.+++++++++++||.+.+. ..+.+.+.+....... ...++|++ .+..++..+.+
T Consensus 159 ~~--~~~v~~~~~~~~~t~~vi~~~~fg~~~~~---~~~~~~~~~~~~~~~~----~~~~~p~l-----~~~~~~~~~~~ 224 (472)
T PLN02987 159 SW--SSRVLLMEEAKKITFELTVKQLMSFDPGE---WTESLRKEYVLVIEGF----FSVPLPLF-----STTYRRAIQAR 224 (472)
T ss_pred hh--ccceehHHHHHHHHHHHHHHHHcCCCChH---HHHHHHHHHHHHHhhh----hcCCCcCC-----CchHHHHHHHH
Confidence 11 23699999999999999999999987632 1222322222221111 12234543 12356777889
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 244 RKFDDMMERILKEHQEARKINKETGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 244 ~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
+++++++.++|+++++... .+. ....|+++.|++..+ .+++++|.+++.++++|
T Consensus 225 ~~~~~~~~~~i~~r~~~~~----~~~-~~~~d~l~~ll~~~~------~~~~~ei~~~~~~l~~A 278 (472)
T PLN02987 225 TKVAEALTLVVMKRRKEEE----EGA-EKKKDMLAALLASDD------GFSDEEIVDFLVALLVA 278 (472)
T ss_pred HHHHHHHHHHHHHHHhhhh----ccC-cccccHHHHHHhcCC------CCCHHHHHHHHHHHHHh
Confidence 9999999999999876532 211 235799999997631 48999999999998875
No 20
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.97 E-value=8.4e-30 Score=236.75 Aligned_cols=264 Identities=29% Similarity=0.471 Sum_probs=203.2
Q ss_pred CCCCCCCCeeeecccCC--CCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCccccccc--c
Q 040102 35 PPSPMALPIIGHLHLLA--PIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAVDY--L 110 (308)
Q Consensus 35 pPgP~~~PllGnl~~l~--~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~~~--~ 110 (308)
||||+++|++||++++. ..++..+.+|.++||+++++++|++++++|+||+++++++.+++..|+.++....... .
T Consensus 1 Ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~~kyG~i~~~~~~~~~~vvv~~pe~~~~il~~~~~~~~~~~~~~~~~~~~~ 80 (463)
T PF00067_consen 1 PPGPPPLPILGNLLQFRRKGNPHEFFRELHKKYGPIFRIWPGGQPIVVVSDPELIKEILRSRSKYFSFRPRPPWFEIFRG 80 (463)
T ss_dssp SSCSSSBTTTBTHHHHHTTHHHHHHHHHHHHHHTSEEEEEETTEEEEEEESHHHHHHHHTTTTTTEEEEHCHHHHHHHHH
T ss_pred CcCCCCcCceeEHHHhcCCCcHHHHHHHHHHHhCCEEEEeEecccccccccchhhccccccccccccccccccccccccc
Confidence 89999999999999984 5678899999999999999999999999999999999999999888888765443332 1
Q ss_pred ccCCcceEeccCChhhhhhhhHHHhhcCChH-HHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHH
Q 040102 111 TYGSADFSFAPYGPYWKFMKKLCMTQLLGGQ-TLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMT 189 (308)
Q Consensus 111 ~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~-~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~ 189 (308)
...+.++ +..+|+.|+.+|+++. +.|+.. ++ .+.+.+.++++.+++.|.+....+.++|+.+.+.++++|++++++
T Consensus 81 ~~~~~~l-~~~~~~~~~~~R~~~~-~~~~~~~~~-~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~d~i~~~~ 157 (463)
T PF00067_consen 81 PFGGKGL-FFSDGERWRRQRRLLA-PAFSSKKIL-KLEPLIDEEAEELIDQLRKKAGSSGPVDLFDWLRRFALDVIGRVL 157 (463)
T ss_dssp HHTTTSS-TTSSHHHHHHHHHHHH-HHHSHHHHH-HHHHHHHHHHHHHHHHHHHTTTSESEEEHHHHHHHHHHHHHHHHH
T ss_pred ccccccc-cccccccccccccccc-ccccccccc-ccccccccccccccccccccccccceeeeeccccccccccccccc
Confidence 1223344 4456899999999996 678877 66 899999999999999999865434479999999999999999999
Q ss_pred hcCcccCCchh-HHHHHHHHHHHHHHhCCC--CccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 040102 190 MGQICSINDKE-ADEVRKLVQETAELTGKF--NLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKE 266 (308)
Q Consensus 190 fG~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~ 266 (308)
||.+++..+.. ..++.+.++.+....... .+..++|++.++ +....++..++.+.+.+++.+++++++++.+
T Consensus 158 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---- 232 (463)
T PF00067_consen 158 FGKDFGSLDDEDFEEFLEAFDELFELLSNFFWNLPFFFPWLKYL-PTPLFRRFKRARDRLRKYIKEIIEERREELD---- 232 (463)
T ss_dssp HSSHHHGTTHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCTS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHSHH----
T ss_pred ccceeeeccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccc----
Confidence 99997532222 345666666665443221 234566765554 3344566777788999999999999987754
Q ss_pred cCCCCCCCCHHHHHhhcc-ccccccCCCCHHHHHHHHHHHhcC
Q 040102 267 TGKDYAPMDLLDMLLDIS-EDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 267 ~~~~~~~~d~l~~ll~~~-~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
.+. ....|+++.+|+.. +.++ +..+|+++|.+++.++++|
T Consensus 233 ~~~-~~~~d~l~~ll~~~~~~~~-~~~ls~~~i~~~~~~~~~a 273 (463)
T PF00067_consen 233 DGD-ESRRDLLDSLLQASSDSDG-PSGLSDEEIAAELLTLLFA 273 (463)
T ss_dssp SSS-SSCSSHHHHHHHHHHTTTT-TSSSSHHHHHHHHHHHHHH
T ss_pred ccc-ccccccccccccccccccc-ccccccccccccccccccc
Confidence 211 25789999999986 2221 1369999999999998865
No 21
>PLN02774 brassinosteroid-6-oxidase
Probab=99.97 E-value=1.1e-28 Score=231.24 Aligned_cols=247 Identities=17% Similarity=0.254 Sum_probs=179.0
Q ss_pred CCCCCCCCCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCccccccc
Q 040102 30 TTSSLPPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAVDY 109 (308)
Q Consensus 30 ~~~~~pPgP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~~~ 109 (308)
.+.++||||+++|++||++.+.++++..+.+|.++||+++++++|++++|+++||+++++++.+++..|..+........
T Consensus 28 ~r~~~ppgp~~~P~~G~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~ 107 (463)
T PLN02774 28 SKKGLPPGTMGWPLFGETTEFLKQGPDFMKNQRLRYGSFFKSHILGCPTIVSMDPELNRYILMNEGKGLVPGYPQSMLDI 107 (463)
T ss_pred CCCCCCCCCCCCCchhhHHHHHHhhHHHHHHHHHHhccCccceecCCCeEEEeCHHHHHHHHcCCCCeEEecCCHHHHHH
Confidence 34467999999999999987755567789999999999999999999999999999999999988887754322222222
Q ss_pred cccCCcceEeccCChhhhhhhhHHHhhcCChHHHhh-hhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHH
Q 040102 110 LTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQ-FIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRM 188 (308)
Q Consensus 110 ~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~-~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~ 188 (308)
+ +++++ ++.+|+.|+.+||+++ ++|+++.++. +.+.+.+.++++++.|.. ++++|+.+.+.++++++++++
T Consensus 108 l--g~~~~-~~~~g~~w~~~R~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~ 179 (463)
T PLN02774 108 L--GTCNI-AAVHGSTHRYMRGSLL-SLISPTMIRDHLLPKIDEFMRSHLSGWDG----LKTIDIQEKTKEMALLSALKQ 179 (463)
T ss_pred h--Cccch-hhcCCHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHhhCC----CCCEEeeHHHHHHHHHHHHHH
Confidence 2 22234 4457999999999995 7899999886 688888888888877643 357999999999999999999
Q ss_pred HhcCcccCCchhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 040102 189 TMGQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETG 268 (308)
Q Consensus 189 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~ 268 (308)
+||.+... ..+++.+.+... .... ..+|. ++ +....++..++.+.+.+++.+.|++++++
T Consensus 180 ~~g~~~~~---~~~~~~~~~~~~---~~~~---~~~~~--~l-p~~~~~~~~~~~~~~~~~~~~~i~~r~~~-------- 239 (463)
T PLN02774 180 IAGTLSKP---ISEEFKTEFFKL---VLGT---LSLPI--DL-PGTNYRSGVQARKNIVRMLRQLIQERRAS-------- 239 (463)
T ss_pred HcCCCChH---HHHHHHHHHHHH---hccc---ccCCc--CC-CChhhhHHHHHHHHHHHHHHHHHHHHHhc--------
Confidence 99986521 122233222221 1110 01121 12 11223566677888888999888887532
Q ss_pred CCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 269 KDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 269 ~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
+ ...+|+++.+|+...+ +..+|+++|.+++.++++|
T Consensus 240 ~-~~~~d~l~~ll~~~~~---~~~~s~~ei~~~~~~ll~A 275 (463)
T PLN02774 240 G-ETHTDMLGYLMRKEGN---RYKLTDEEIIDQIITILYS 275 (463)
T ss_pred C-CCcccHHHHHHhCccC---CCCCCHHHHHHHHHHHHHh
Confidence 1 2457999999974322 2259999999999999875
No 22
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.96 E-value=2.7e-28 Score=228.60 Aligned_cols=243 Identities=20% Similarity=0.284 Sum_probs=179.7
Q ss_pred CCCCCCCCCCCCCeeeecccC-CCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCcccccc
Q 040102 30 TTSSLPPSPMALPIIGHLHLL-APIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAVD 108 (308)
Q Consensus 30 ~~~~~pPgP~~~PllGnl~~l-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~~ 108 (308)
++.+.||||+++|++||++++ .++++.++.++.++||+++++|+|++++|+++||+++++++.++...| +|......
T Consensus 32 ~~~~~Ppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~--~~~~~~~~ 109 (463)
T PLN02196 32 TKLPLPPGTMGWPYVGETFQLYSQDPNVFFASKQKRYGSVFKTHVLGCPCVMISSPEAAKFVLVTKSHLF--KPTFPASK 109 (463)
T ss_pred CCCCCCCCCCCCCccchHHHHHhcCHHHHHHHHHHHhhhhheeeecCCceEEEcCHHHHHHHHhCCCCcc--cccCchHH
Confidence 456789999999999999876 577899999999999999999999999999999999999999887776 34322222
Q ss_pred ccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHH
Q 040102 109 YLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRM 188 (308)
Q Consensus 109 ~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~ 188 (308)
....+..+ ++..+|+.|+++||+++ +.|++++++.+.+.+.++++++++.|. +.++|+.+.+.++++++++.+
T Consensus 110 ~~~~g~~~-l~~~~g~~w~~~Rk~l~-~~f~~~~l~~~~~~i~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~v~~~~ 182 (463)
T PLN02196 110 ERMLGKQA-IFFHQGDYHAKLRKLVL-RAFMPDAIRNMVPDIESIAQESLNSWE-----GTQINTYQEMKTYTFNVALLS 182 (463)
T ss_pred HHHcCccc-ccccCcHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHHHHcCC-----CCeEEeHHHHHHHHHHHHHHH
Confidence 11222223 44467999999999996 789999999999999999999888763 347899999999999999999
Q ss_pred HhcCcccCCchhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 040102 189 TMGQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETG 268 (308)
Q Consensus 189 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~ 268 (308)
+||.+... ....+.+.... ... ....+|+. + +....++..++.+.+.+++.++|++++++ .
T Consensus 183 ~fG~~~~~---~~~~~~~~~~~----~~~--~~~~~~~~--~-p~~~~~~~~~a~~~~~~~~~~~i~~~~~~------~- 243 (463)
T PLN02196 183 IFGKDEVL---YREDLKRCYYI----LEK--GYNSMPIN--L-PGTLFHKSMKARKELAQILAKILSKRRQN------G- 243 (463)
T ss_pred HcCCCCch---HHHHHHHHHHH----Hhc--chhccccc--C-CCccchHHHHHHHHHHHHHHHHHHHHhhc------C-
Confidence 99987522 11222222211 111 01123321 1 11223566777888888888888877542 1
Q ss_pred CCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 269 KDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 269 ~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
.+..|+++.+++.. ..+++++|.++++++++|
T Consensus 244 --~~~~d~l~~ll~~~------~~l~~~ei~~~~~~~~~A 275 (463)
T PLN02196 244 --SSHNDLLGSFMGDK------EGLTDEQIADNIIGVIFA 275 (463)
T ss_pred --CCcccHHHHHHhcC------CCCCHHHHHHHHHHHHHh
Confidence 24579999998531 258999999999999876
No 23
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.96 E-value=2.5e-27 Score=223.72 Aligned_cols=252 Identities=21% Similarity=0.316 Sum_probs=179.0
Q ss_pred CCCCCCCCCCCCCeeeecccC-----CCCchHHHHHHHHhcCC--eeEEecCCcCEEEecCHHHHHHHHHhcccccccCC
Q 040102 30 TTSSLPPSPMALPIIGHLHLL-----APIPHQALHKLSIRYGP--LIHLFLGSVPCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 30 ~~~~~pPgP~~~PllGnl~~l-----~~~~~~~~~~~~~~yG~--i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
+..++||||+++|++||++++ ..+++..+.++.++||+ ++++++|++|+|+++||+++++++.++ +.|.++.
T Consensus 39 ~~~~lpPgp~~~PilG~l~~~~~~~~~~~~~~~~~~~~~kyG~~~i~~~~~~~~~~vvv~~pe~~~~vl~~~-~~f~~~~ 117 (490)
T PLN02302 39 GQPPLPPGDLGWPVIGNMWSFLRAFKSSNPDSFIASFISRYGRTGIYKAFMFGQPTVLVTTPEACKRVLTDD-DAFEPGW 117 (490)
T ss_pred CCCCCcCCCCCCCccccHHHHHHhcccCCcHHHHHHHHHHhCCCcceeeecCCCCeEEEcCHHHHHHHHcCC-CccccCC
Confidence 345789999999999999876 23578899999999997 799999999999999999999999876 4565442
Q ss_pred ccccccccccCCcceEeccCChhhhhhhhHHHhhcC-ChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHH
Q 040102 103 ISAAVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLL-GGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLT 181 (308)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~f-s~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t 181 (308)
...... . .+. +.++..+|+.|+++||++. +.| ++++++.+.+.+.+++.++++.+.+ +.++|+.+.+.+++
T Consensus 118 ~~~~~~-~-~g~-~~~~~~~g~~w~~~R~~~~-~~f~~~~~l~~~~~~i~~~v~~~~~~~~~----~~~v~~~~~~~~~~ 189 (490)
T PLN02302 118 PESTVE-L-IGR-KSFVGITGEEHKRLRRLTA-APVNGPEALSTYIPYIEENVKSCLEKWSK----MGEIEFLTELRKLT 189 (490)
T ss_pred chhHHH-H-hcc-ccccccCcHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHHhcC----CCCEehHHHHHHHH
Confidence 222222 2 122 2233457999999999996 677 5788999999999999999988754 34699999999999
Q ss_pred HHHHHHHHhcCcccCCchhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040102 182 NNVVSRMTMGQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEAR 261 (308)
Q Consensus 182 ~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~ 261 (308)
++++++++||.+.+. ..+++............. +...+|. ...++..+..+.+.+++.++|+++++..
T Consensus 190 ~~vi~~~~~G~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~p~-------~~~~~~~~~~~~l~~~~~~~i~~~~~~~ 257 (490)
T PLN02302 190 FKIIMYIFLSSESEL---VMEALEREYTTLNYGVRA--MAINLPG-------FAYHRALKARKKLVALFQSIVDERRNSR 257 (490)
T ss_pred HHHHHHHHcCCCChH---HHHHHHHHHHHHHHHhhh--CCcCCCc-------hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999987632 122232222211111100 0111121 1123455667788889999998887553
Q ss_pred hhhhccCCCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 262 KINKETGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 262 ~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
. .+...+..|+++.|++..+++ +..+++++|++++.++++|
T Consensus 258 ~----~~~~~~~~d~l~~ll~~~~~~--~~~~~~~~i~~~~~~~~~A 298 (490)
T PLN02302 258 K----QNISPRKKDMLDLLLDAEDEN--GRKLDDEEIIDLLLMYLNA 298 (490)
T ss_pred h----ccCCCCcCCHHHHHHhhhccC--CCCCCHHHHHHHHHHHHHh
Confidence 2 111124579999999875432 2369999999999998876
No 24
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.96 E-value=1.9e-27 Score=225.88 Aligned_cols=265 Identities=15% Similarity=0.269 Sum_probs=181.2
Q ss_pred CCCCCCCCeeeecccCCCCchHHHHHHHHhc---CCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCccc-ccccc
Q 040102 35 PPSPMALPIIGHLHLLAPIPHQALHKLSIRY---GPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISA-AVDYL 110 (308)
Q Consensus 35 pPgP~~~PllGnl~~l~~~~~~~~~~~~~~y---G~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~-~~~~~ 110 (308)
+|||+++|++||++++.. .+..+.+|.++| |+++++++|++|+|+++||+++++|+.++...|..++... ....+
T Consensus 32 ~pgp~~~p~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~~~ 110 (516)
T PLN03195 32 RKGPKSWPIIGAALEQLK-NYDRMHDWLVEYLSKDRTVVVKMPFTTYTYIADPVNVEHVLKTNFANYPKGEVYHSYMEVL 110 (516)
T ss_pred cCCCCCCCeecchHHHHh-ccchHHHHHHHHhccCCcEEEeeCCCCceEecCHHHHHHHHhhCccccCCcHhHHHHHHHH
Confidence 689999999999876522 245677888888 8999999999999999999999999988766675543211 11122
Q ss_pred ccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHH-HHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHH
Q 040102 111 TYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIR-SEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMT 189 (308)
Q Consensus 111 ~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~-~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~ 189 (308)
. ++++ ++.+|+.|+.+||+++ +.|+.++++.+.+.+ .+.++.+++.+.+....+.++|+.+.+.++++|+|+.++
T Consensus 111 ~--g~~l-~~~~g~~w~~~Rr~l~-~~fs~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~ 186 (516)
T PLN03195 111 L--GDGI-FNVDGELWRKQRKTAS-FEFASKNLRDFSTVVFREYSLKLSSILSQASFANQVVDMQDLFMRMTLDSICKVG 186 (516)
T ss_pred h--cCee-eccCcHHHHHHHHhcc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEcHHHHHHHHHHHHHHHHH
Confidence 1 2344 5568999999999995 889999999999976 555777787776533346689999999999999999999
Q ss_pred hcCcccCCch--hHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 040102 190 MGQICSINDK--EADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKET 267 (308)
Q Consensus 190 fG~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~ 267 (308)
||.+++..+. ....+.+.++......... ....++.+.+....+..++..+..+.+++++.+++++++++....+..
T Consensus 187 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 265 (516)
T PLN03195 187 FGVEIGTLSPSLPENPFAQAFDTANIIVTLR-FIDPLWKLKKFLNIGSEALLSKSIKVVDDFTYSVIRRRKAEMDEARKS 265 (516)
T ss_pred hCCCccccccCCCccHHHHHHHHHHHHHHHH-HhcchhhHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9998853221 1124544444332221100 011111121111122344556677888999999999887653200000
Q ss_pred CCCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 268 GKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 268 ~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
+. ...+|+++.|++..+++ +..+++++|.+++.++++|
T Consensus 266 ~~-~~~~d~l~~ll~~~~~~--~~~l~~~~i~~~~~~ll~A 303 (516)
T PLN03195 266 GK-KVKHDILSRFIELGEDP--DSNFTDKSLRDIVLNFVIA 303 (516)
T ss_pred cc-cccccHHHHHHhccCCC--CCCCCHHHHHHHHHHHHHH
Confidence 01 13569999999865432 2369999999999999886
No 25
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.96 E-value=1.6e-27 Score=222.81 Aligned_cols=252 Identities=18% Similarity=0.210 Sum_probs=175.3
Q ss_pred CCCCCCCCCCCCCeeeecccCC-----CCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCcc
Q 040102 30 TTSSLPPSPMALPIIGHLHLLA-----PIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPIS 104 (308)
Q Consensus 30 ~~~~~pPgP~~~PllGnl~~l~-----~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~ 104 (308)
++.++||||+++|++||++++. ..++.++.+|.++||+||++|+|++++||++||++++++|++++..|++|+..
T Consensus 4 ~~~~~Ppg~~~~P~iG~~~~l~~~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvv~~p~~~~~vl~~~~~~~~~~~~~ 83 (452)
T PLN03141 4 KKSRLPKGSLGWPVIGETLDFISCAYSSRPESFMDKRRSLYGKVFKSHIFGTPTIVSTDAEVNKVVLQSDGNAFVPAYPK 83 (452)
T ss_pred CCCCCCCCCCCCCchhhHHHHHhhcccCChHHHHHHHHHHhhheeeeccCCCCEEEEeCHHHhhHHHhCCCCeeeccCch
Confidence 3456899999999999998872 35788999999999999999999999999999999999999999989877422
Q ss_pred ccccccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhh-hHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHH
Q 040102 105 AAVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQF-IPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNN 183 (308)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~-~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~ 183 (308)
....+. +.+++. ..+|+.||++|+++. +.|+..+++.+ .+.+.+.+..+++.+ ..+.++|+.+.+.+++++
T Consensus 84 -~~~~l~-g~~~~~-~~~g~~wr~~r~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 155 (452)
T PLN03141 84 -SLTELM-GKSSIL-LINGSLQRRVHGLIG-AFLKSPHLKAQITRDMERYVSESLDSW----RDDPPVLVQDETKKIAFE 155 (452)
T ss_pred -hHHHHh-Cccccc-ccCcHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHHHHHHHHhc----cCCCCEEhHHHHHHHHHH
Confidence 222232 222344 457999999999986 67887777653 344444444444433 235679999999999999
Q ss_pred HHHHHHhcCcccCCchhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040102 184 VVSRMTMGQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKI 263 (308)
Q Consensus 184 vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 263 (308)
+|++++||.+.+. +.+++.+.+........ .+|+ ++ +....++..++.+.+.+++.++|+++++...
T Consensus 156 vi~~~~~G~~~~~---~~~~~~~~~~~~~~~~~------~~~~--~~-p~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~- 222 (452)
T PLN03141 156 VLVKALISLEPGE---EMEFLKKEFQEFIKGLM------SLPI--KL-PGTRLYRSLQAKKRMVKLVKKIIEEKRRAMK- 222 (452)
T ss_pred HHHHHHcCCCchH---HHHHHHHHHHHHhhhHH------hCcc--CC-CchHhHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 9999999987622 22233333333222111 1221 11 1111244556788899999999999876542
Q ss_pred hhccCC-CCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 264 NKETGK-DYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 264 ~~~~~~-~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
+.... .....|+++.+++... ..+|+++|++++.++++|
T Consensus 223 -~~~~~~~~~~~d~l~~ll~~~~-----~~l~~~~i~~~~~~ll~A 262 (452)
T PLN03141 223 -NKEEDETGIPKDVVDVLLRDGS-----DELTDDLISDNMIDMMIP 262 (452)
T ss_pred -ccCccccCChhhHHHHHHhcCC-----CCCCHHHHHHHHHHHHHh
Confidence 00000 0124699999997642 259999999999999876
No 26
>PLN02936 epsilon-ring hydroxylase
Probab=99.95 E-value=2.7e-26 Score=216.38 Aligned_cols=266 Identities=16% Similarity=0.233 Sum_probs=191.1
Q ss_pred CCCCCCCCCCCCeeeecccC-----CCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCccc
Q 040102 31 TSSLPPSPMALPIIGHLHLL-----APIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISA 105 (308)
Q Consensus 31 ~~~~pPgP~~~PllGnl~~l-----~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~ 105 (308)
.+++--|-.|||++|+.+++ ...++..+.+|.++|||++++++|+.++|+++|||++++|+.+.+..|.+++...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~~~il~~~~~~f~~~~~~~ 89 (489)
T PLN02936 10 LNRLWGDDSGIPVADAKLEDVTDLLGGALFLPLFKWMNEYGPVYRLAAGPRNFVVVSDPAIAKHVLRNYGSKYAKGLVAE 89 (489)
T ss_pred hhccCCCCCCCccHHhHHhhHHHHhccHHHHHHHHHHHHcCCEEEEccCCccEEEEcCHHHHHHHHHhccccccCcchhh
Confidence 35667788999999999886 2557889999999999999999999999999999999999998888898875322
Q ss_pred cccccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhH-HHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHH
Q 040102 106 AVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIP-IRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNV 184 (308)
Q Consensus 106 ~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~-~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~v 184 (308)
....+. +.+++ ..+|+.||++||+++ +.|+.++++.+.+ ++.++++++++.+.+.+..+.++|+.+.+.++++|+
T Consensus 90 ~~~~~~--~~~i~-~~~g~~wk~~Rk~l~-~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~vd~~~~~~~~~~dv 165 (489)
T PLN02936 90 VSEFLF--GSGFA-IAEGELWTARRRAVV-PSLHRRYLSVMVDRVFCKCAERLVEKLEPVALSGEAVNMEAKFSQLTLDV 165 (489)
T ss_pred hhHHHh--cCccc-cCCchHHHHHHHhhc-CccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHH
Confidence 222222 23444 457999999999995 8899989988765 788889999999987544467899999999999999
Q ss_pred HHHHHhcCcccCCchhHHHHHHHHHHHHHHhCCCCcccccccccc--c-cccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040102 185 VSRMTMGQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKN--I-DLQGFGKRLKEVRRKFDDMMERILKEHQEAR 261 (308)
Q Consensus 185 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~--~-~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~ 261 (308)
|+.++||.+++..+.+ .++...+......... ...+++|++.+ + ...+..++..++.+.+++++.++++++++..
T Consensus 166 i~~~~fG~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~l~~~~p~~~~~~~~~~~i~~~~~~~i~~~~~~~ 243 (489)
T PLN02936 166 IGLSVFNYNFDSLTTD-SPVIQAVYTALKEAET-RSTDLLPYWKVDFLCKISPRQIKAEKAVTVIRETVEDLVDKCKEIV 243 (489)
T ss_pred HHHHHcCCCccccccC-cHHHHHHHHHHHHHHH-hhhccchHHhhHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998532211 2333333332222111 11234443321 1 0123345677888889999999998877543
Q ss_pred hhhhcc--CC---CCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 262 KINKET--GK---DYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 262 ~~~~~~--~~---~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
+..... .+ .....|+++.|++..+ .+++++|.++|.++++|
T Consensus 244 ~~~~~~~~~~~~~~~~~~d~l~~ll~~~~------~~~~~~i~~~~~~~~~a 289 (489)
T PLN02936 244 EAEGEVIEGEEYVNDSDPSVLRFLLASRE------EVSSVQLRDDLLSMLVA 289 (489)
T ss_pred hhcccccccccccccCchHHHHHHHhccc------cCCHHHHHHHHHHHHHH
Confidence 200000 00 0124689999996542 48999999999999876
No 27
>PLN02738 carotene beta-ring hydroxylase
Probab=99.93 E-value=3.2e-24 Score=206.73 Aligned_cols=253 Identities=13% Similarity=0.234 Sum_probs=176.5
Q ss_pred eeeecccC-CCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCccccccccccCCcceEecc
Q 040102 43 IIGHLHLL-APIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAVDYLTYGSADFSFAP 121 (308)
Q Consensus 43 llGnl~~l-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~ 121 (308)
.+||+..+ +...+..+.+|.++||||+++++|++++|+|+||+.+++|+.+++..|.+++.......+. +.+++ ..
T Consensus 141 ~~G~l~~i~~g~~~~~l~~lh~kYGpI~ri~lGp~~~vvIsDpe~i~eIl~~~~~~f~k~~~~~~~~~~~--g~~l~-~~ 217 (633)
T PLN02738 141 AKGSISAVRGEAFFIPLYELFLTYGGIFRLTFGPKSFLIVSDPSIAKHILRDNSKAYSKGILAEILEFVM--GKGLI-PA 217 (633)
T ss_pred ccCcHHHhcCchHHHHHHHHHHHhCCEEEEEeCCCCEEEECCHHHHHHHHhhCcccCCCcchHHHHhhcc--CCcee-cC
Confidence 45776666 4556789999999999999999999999999999999999998877787765322222221 23444 45
Q ss_pred CChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHhcCcccCCchhH
Q 040102 122 YGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMGQICSINDKEA 201 (308)
Q Consensus 122 ~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~~~~~~~~~~ 201 (308)
+|+.||.+||.+. +.|+.+.++.+.+++.++++.+++.|.+....+.++|+.+.+..+|+|||+.++||.+++..++ .
T Consensus 218 dge~wr~rRr~l~-p~Fs~~~v~~l~~~i~~~v~~L~~~L~~~~~~g~~vdl~~~~~~lt~DVI~~~~FG~~~~~~~~-~ 295 (633)
T PLN02738 218 DGEIWRVRRRAIV-PALHQKYVAAMISLFGQASDRLCQKLDAAASDGEDVEMESLFSRLTLDIIGKAVFNYDFDSLSN-D 295 (633)
T ss_pred CcHHHHHHHHhcc-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeHHHHHHHHHHHHHHHHHhCCCcccccc-c
Confidence 7999999999996 8999999999999999999999999987544577999999999999999999999999853221 1
Q ss_pred HHHHHHHHHHHHHhCCCCcccc----ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc---C-CCCCC
Q 040102 202 DEVRKLVQETAELTGKFNLQDY----IWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKET---G-KDYAP 273 (308)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~----~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~---~-~~~~~ 273 (308)
+.+.+.+...+..........+ +|++..+ +++.++..+..+.+++++.++++.+++..+..... . .....
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l--~~~~~~~~~~~~~l~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~ 373 (633)
T PLN02738 296 TGIVEAVYTVLREAEDRSVSPIPVWEIPIWKDI--SPRQRKVAEALKLINDTLDDLIAICKRMVEEEELQFHEEYMNERD 373 (633)
T ss_pred hHHHHHHHHHHHHHHHHhhcchhhhhhhHHhhh--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhccccccc
Confidence 2333333332221111001111 2222222 23345566667777777888777655322100000 0 00124
Q ss_pred CCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 274 MDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 274 ~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
.|+++.|++.. ..+|+++|.+++.++++|
T Consensus 374 ~dil~~Ll~~~------~~ls~~~L~~e~~~ll~A 402 (633)
T PLN02738 374 PSILHFLLASG------DDVSSKQLRDDLMTMLIA 402 (633)
T ss_pred chHHHHHHHcC------CCCCHHHHHHHHHHHHhc
Confidence 58999999753 158999999999999987
No 28
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.88 E-value=4.8e-21 Score=173.76 Aligned_cols=260 Identities=20% Similarity=0.306 Sum_probs=194.1
Q ss_pred CCCCCCCCCCeeeecccC---C-CCchHHHHHHHHhcCCeeEEe-cCCcCEEEecCHHHHHHHHHhcccccccCC-ccc-
Q 040102 33 SLPPSPMALPIIGHLHLL---A-PIPHQALHKLSIRYGPLIHLF-LGSVPCIVACSPETAKEILKTHETSFCDRP-ISA- 105 (308)
Q Consensus 33 ~~pPgP~~~PllGnl~~l---~-~~~~~~~~~~~~~yG~i~~~~-~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp-~~~- 105 (308)
.-+|||+++|++|.+... + .+.|+......++|||||+.. +|+...|.+.||++++.++.+++. +--|| ...
T Consensus 50 ~~IP~p~~~~~l~~l~~~~~~~~~~lh~~~~~~~~~YG~I~~~~~~G~~~~V~v~~p~d~E~v~r~EG~-~P~Rp~~~~~ 128 (519)
T KOG0159|consen 50 EEIPGPKGLPFLGLLWIWRAGGATKLHQHIVQLHQKYGPIFREGMLGRVDLVHVYNPDDVEKVFRNEGK-YPFRPLLIEP 128 (519)
T ss_pred hhcCCCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHcCceeeeccCCCCCeEEeeCHHHHHHHHhcCCC-CCCcccccch
Confidence 446999999999999844 2 456888999999999999999 999999999999999999987763 34454 111
Q ss_pred --cccccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhcc---CCCceehHHHHHHH
Q 040102 106 --AVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAK---ASEAVDVGKELIRL 180 (308)
Q Consensus 106 --~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~---~~~~vd~~~~~~~~ 180 (308)
..+... ++..+++..+|++|++.|..++..++++++++.|.|.++..++.+++.+....+ ..-+.|+.+.+.++
T Consensus 129 w~~~rd~~-~~~~Gl~~~~G~~W~~~Rs~ln~~ll~P~~v~~yl~~l~~V~~DF~~~l~~~r~~~~~~~~~D~~~~l~~w 207 (519)
T KOG0159|consen 129 WVAYRDFR-GGVCGLFLLEGPEWQRLRSALNPLLLQPQAVRRYLPQLNAVSDDFVERLRAQRDPERGELVPDFAQELYRW 207 (519)
T ss_pred hhhhHHhh-ccCCCcccCCCHHHHHHHHHhchhhcCHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHH
Confidence 112222 233455667899999999999877899999999999999999999999987644 23478999999999
Q ss_pred HHHHHHHHHhcCcccCCc----hhHHHHHHHHHHHHHHhCCCCcccccc-ccccccccchHHHHHHHHHHHHHHHHHHHH
Q 040102 181 TNNVVSRMTMGQICSIND----KEADEVRKLVQETAELTGKFNLQDYIW-FCKNIDLQGFGKRLKEVRRKFDDMMERILK 255 (308)
Q Consensus 181 t~~vi~~~~fG~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~ 255 (308)
++..||.++||.+++... ++.+.|.+++..++..... .++.| +.+++ +++.-+++.++...+-++.++.|+
T Consensus 208 slEsi~~V~l~~rlG~L~~~~~~~a~~fi~ai~~~F~~s~~---l~~~p~l~r~~-~t~~wk~~~~~~D~i~~~~~~~Id 283 (519)
T KOG0159|consen 208 SLESICLVLLGTRLGLLGESPPSEAQQFIDAIKKMFESSAQ---LMLMPSLWRYF-PTKVWKDFVRAWDQIFDVGDKYID 283 (519)
T ss_pred HHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHhHHH---HHhcchHHHhC-CChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999986432 3347788888877766543 22344 44556 455557778888888888999999
Q ss_pred HHHHHhhhhhccCCCCCCC-CHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 256 EHQEARKINKETGKDYAPM-DLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~-d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
+..++.+.+... + .+.. .++..|+.. .++.+.+...+++|++|
T Consensus 284 ~~l~~l~~~~~~-~-~~~~~~l~~~L~~~--------~l~~k~~~~~~~dll~a 327 (519)
T KOG0159|consen 284 NALEELEKQDSA-G-SEYTGSLLELLLRK--------ELSRKDAKANVMDLLAA 327 (519)
T ss_pred HHHHHHHhcccc-c-cchhHHHHHHHHHc--------cCCHHHHHHHHHHHHHH
Confidence 888776511111 0 0222 344444422 48899999999999876
No 29
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.87 E-value=2.8e-20 Score=175.77 Aligned_cols=245 Identities=16% Similarity=0.199 Sum_probs=169.8
Q ss_pred CCCeeeecccCCCCchHHHHHHHHhcC-CeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCcc-ccccccccCCcce
Q 040102 40 ALPIIGHLHLLAPIPHQALHKLSIRYG-PLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPIS-AAVDYLTYGSADF 117 (308)
Q Consensus 40 ~~PllGnl~~l~~~~~~~~~~~~~~yG-~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~-~~~~~~~~~~~~~ 117 (308)
..++.|+....-.+.+..+..+.++++ .+++++.++. |+++||+.+++++.+++..|.+.+.. .....+. ++++
T Consensus 48 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--iv~~dpe~i~~vl~~~~~~~~k~~~~~~~~~~~~--g~gi 123 (502)
T PLN02426 48 RAYLTASWAKDFDNLCDWYAHLLRRSPTGTIHVHVLGN--TITANPENVEYMLKTRFDNYPKGKPFSAILGDLL--GRGI 123 (502)
T ss_pred CCCccHHHHHhcccHHHHHHHHHHhCCCcEEEEecCCc--EEecCHHHHHHHHhhChhcCCCcHhHHHHHHHhc--CCce
Confidence 356888886542345677777888887 5788876554 89999999999999887788654321 1222222 2344
Q ss_pred EeccCChhhhhhhhHHHhhcCChHHHhhhh--HHHHHHHHHHHHHHHHhccC--CCceehHHHHHHHHHHHHHHHHhcCc
Q 040102 118 SFAPYGPYWKFMKKLCMTQLLGGQTLNQFI--PIRSEEIWRFMQLMLKKAKA--SEAVDVGKELIRLTNNVVSRMTMGQI 193 (308)
Q Consensus 118 ~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~--~~~~~~~~~l~~~l~~~~~~--~~~vd~~~~~~~~t~~vi~~~~fG~~ 193 (308)
++.+|+.||.+||+++ +.|+.++++.+. +++++.++.+++.+.+.++. +.++|+.+.+.++|+|+|+.++||.+
T Consensus 124 -~~~~g~~wk~~Rk~l~-~~fs~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~ 201 (502)
T PLN02426 124 -FNVDGDSWRFQRKMAS-LELGSVSIRSYAFEIVASEIESRLLPLLSSAADDGEGAVLDLQDVFRRFSFDNICKFSFGLD 201 (502)
T ss_pred -eecCcHHHHHHHHHhH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEcHHHHHHHHHHHHHHHHHhCCC
Confidence 4567999999999995 889999998774 67777788888888764322 36799999999999999999999998
Q ss_pred ccCCch--hHHHHHHHHHHHHHHhCCCCcccccccc----ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 040102 194 CSINDK--EADEVRKLVQETAELTGKFNLQDYIWFC----KNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKET 267 (308)
Q Consensus 194 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~P~l----~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~ 267 (308)
++..+. ...++.++++......... ....+|++ +++ +.+..+++.+..+.+++++.++|+++++.. .
T Consensus 202 ~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~I~~r~~~~-----~ 274 (502)
T PLN02426 202 PGCLELSLPISEFADAFDTASKLSAER-AMAASPLLWKIKRLL-NIGSERKLKEAIKLVDELAAEVIRQRRKLG-----F 274 (502)
T ss_pred CcccCCCCCccHHHHHHHHHHHHHHHH-HhcchhHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHHHHHHHhcc-----c
Confidence 853221 1245666555443322110 11122322 122 224456778888999999999999886531 1
Q ss_pred CCCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 268 GKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 268 ~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
....|+++.|++.. .++++|.+++.++++|
T Consensus 275 ---~~~~dll~~ll~~~--------~~~~~l~~~~~~~l~A 304 (502)
T PLN02426 275 ---SASKDLLSRFMASI--------NDDKYLRDIVVSFLLA 304 (502)
T ss_pred ---CCcchHHHHHHhcC--------CCHHHHHHHHHHHHHh
Confidence 23579999999653 2688999999998876
No 30
>PLN02648 allene oxide synthase
Probab=99.79 E-value=2.3e-19 Score=167.91 Aligned_cols=159 Identities=14% Similarity=0.178 Sum_probs=126.3
Q ss_pred CCCCCCCCCCCeeeecccC-----CCCchHHHHHHHHhcCC-eeEEecCCcCE-------EEecCHHHHHHHHHh----c
Q 040102 32 SSLPPSPMALPIIGHLHLL-----APIPHQALHKLSIRYGP-LIHLFLGSVPC-------IVACSPETAKEILKT----H 94 (308)
Q Consensus 32 ~~~pPgP~~~PllGnl~~l-----~~~~~~~~~~~~~~yG~-i~~~~~g~~~~-------vvi~d~e~~~evl~~----~ 94 (308)
.+.|||+.|+|++|++.++ ...+..++.+..++||+ ||++++++.|+ |+++|||+++.+|.+ +
T Consensus 16 ~~~PPg~~g~P~iG~~~~~~~~~~~~~~~~F~~~~~~kyG~~vfk~~l~g~p~~~~~~~~v~~~~~e~~~~v~~~~~~~~ 95 (480)
T PLN02648 16 LREIPGSYGLPFLGAIKDRLDYFYFQGEDEFFRSRVEKYKSTVFRVNMPPGPFIAPDPRVIALLDQKSFPVLFDVSKVDK 95 (480)
T ss_pred CCCCCCCCCCcCcchhhhhhhHHHhcChHHHHHHHHHHhCCceEEecCCCCCCCCCCCCEEEEEcCCceeeeecchhccc
Confidence 3559999999999999865 24557899999999999 99999999776 999999999999975 5
Q ss_pred ccccccCCccccccccccCCc--ceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCcee
Q 040102 95 ETSFCDRPISAAVDYLTYGSA--DFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVD 172 (308)
Q Consensus 95 ~~~f~~Rp~~~~~~~~~~~~~--~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd 172 (308)
...|..... .... +. +++ ..++..+|+.|+++||++. +.|+ .+++.|.+.+.+++..+++.|......+.++|
T Consensus 96 ~~~~~~~~~-~~~~-l~-G~~~~~s~~~~~g~~H~r~Rrll~-~~f~-~~~~~~~~~m~~~~~~~~~~w~~~~~~~~~vd 170 (480)
T PLN02648 96 RDVFTGTYM-PSTA-FT-GGYRVLSYLDPSEPKHAKLKSFLF-ELLK-SRHRRFIPEFRAAFAELFDTWEAELAKKGKAE 170 (480)
T ss_pred cccceeeec-cCcc-cc-CCceeeeecCCCCchHHHHHHHHH-HHHH-HhhhhhhhHHHHHHHHHHHHHHHHHhhCCCcc
Confidence 444554321 2223 32 222 0344567999999999996 8899 57799999999999999999965322345799
Q ss_pred hHHHHHHHHHHHHHHHHhcCccc
Q 040102 173 VGKELIRLTNNVVSRMTMGQICS 195 (308)
Q Consensus 173 ~~~~~~~~t~~vi~~~~fG~~~~ 195 (308)
+.+.++++|+++|++++||.+.+
T Consensus 171 v~~~~~~lt~~vi~~~lfG~~~~ 193 (480)
T PLN02648 171 FNDPLDQMAFNFLCKALTGKDPS 193 (480)
T ss_pred ccchHHHHHHHHHHHHHcCCCcc
Confidence 99999999999999999998763
No 31
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.71 E-value=1.1e-15 Score=136.18 Aligned_cols=263 Identities=17% Similarity=0.238 Sum_probs=172.5
Q ss_pred HHHHHHhhccCCCCCCCCCCC-CCeeeecccCCCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhccccc
Q 040102 20 LVRSIFRRSKTTSSLPPSPMA-LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSF 98 (308)
Q Consensus 20 ~~~~~~~~~~~~~~~pPgP~~-~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f 98 (308)
+..+++++++++ +-||--.+ .|++|++..++++|..++++..++||+||++.+||+.+-++.+|+....+|..+-...
T Consensus 19 ~~~~~~~~r~~~-~~PPli~gwiP~lG~a~~fgk~P~eFl~~~~~K~GdVFTv~l~Gk~~Tfll~p~~~~~v~~~~~~~l 97 (486)
T KOG0684|consen 19 LLFLLLQRRTSR-KEPPLIKGWIPWLGSALAFGKDPLEFLRECRKKYGDVFTVLLMGKYMTFLLGPEGYDFVFKAKLADL 97 (486)
T ss_pred HHHHHHhcccCC-CCCcccccCcchhhHHHHhccCHHHHHHHHHHhcCCeEEEEEcCcEEEEEeCchhhHHHHcCccccc
Confidence 445666555544 45777666 5999999999999999999999999999999999999999999999999997653444
Q ss_pred ccCCcc-ccccccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHH-HHHhccCCCceehHHH
Q 040102 99 CDRPIS-AAVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQL-MLKKAKASEAVDVGKE 176 (308)
Q Consensus 99 ~~Rp~~-~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~-l~~~~~~~~~vd~~~~ 176 (308)
+-+-.. ...... .+ +|++.--.+.....+.+++. ..+...+++++.+.|.++..+..+. +.+ +...|....
T Consensus 98 d~~~~~~~l~~~v-Fg-~~v~~d~~~~~~~e~~~~~k-~~L~~~~lk~~~e~m~~el~~~f~~~~~~----s~~~d~l~~ 170 (486)
T KOG0684|consen 98 DFEEAYSKLTTPV-FG-KGVVYDVPNHVMMEQKKFFK-SALGGVALKSLVELMLEELHAYFETSLGE----SGETDGLYT 170 (486)
T ss_pred CHHHHHHHhhhhh-cC-CCccccCCCchHHHHHHHHH-HHhchhhHHHHHHHHHHHHHHHHhccccc----ccchhHhhh
Confidence 332211 111222 22 34554445788888988986 6789999999999998888777766 332 234555555
Q ss_pred HHHHHHHHHHHHHhcCcccCCchhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHH
Q 040102 177 LIRLTNNVVSRMTMGQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKE 256 (308)
Q Consensus 177 ~~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~ 256 (308)
+.+.+.=.++.+..|.+.-.. -++.....+.+...-.. .....||+ +++.+ ..++..++++.+.+++..+|.+
T Consensus 171 ~~~~ii~tAs~~ll~~e~r~~--~d~~~a~l~~dLd~~F~--~~d~~FP~--~LP~~-~~r~~~ra~~~i~k~f~~~i~~ 243 (486)
T KOG0684|consen 171 FCRLIIFTASRLLLGGEVRDQ--LDADVAKLYHDLDQGFQ--PFDFLFPY--NLPIP-LLRRRDRARKKISKIFSKIILD 243 (486)
T ss_pred hhHHHhhhhHHHhhhhhhhhh--hcchHHHHHHHHhcccc--chHhhccc--CCCcc-hhhhHHHHHHHHHHHHHHHHHH
Confidence 555544444444444433111 01122222222211111 12334563 33222 2455568899999999999988
Q ss_pred HHHHhhhhhccCCCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 257 HQEARKINKETGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
+++..+ +..+|+++.+++..++ +.+.||+++....+.++.|
T Consensus 244 rr~s~s--------~~~~dmlq~l~~~y~d---g~~~te~e~a~~li~~LwA 284 (486)
T KOG0684|consen 244 RRASIS--------KWDNDMLQSLMEKYKD---GRPTTEEEIAGLLIGLLWA 284 (486)
T ss_pred HHhccc--------cccHHHHHHHHHHhhc---CCcCcHHHHHHHHHHHHHh
Confidence 876532 2456999999994433 3579999999888776654
No 32
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.67 E-value=4.3e-15 Score=137.14 Aligned_cols=236 Identities=19% Similarity=0.202 Sum_probs=163.8
Q ss_pred CCCCCCCeeeecccCCC-CchHHHHHHHHhcCCeeEEecCCcC--EEEecCHHHHHHHHHhcccccccCCccccc----c
Q 040102 36 PSPMALPIIGHLHLLAP-IPHQALHKLSIRYGPLIHLFLGSVP--CIVACSPETAKEILKTHETSFCDRPISAAV----D 108 (308)
Q Consensus 36 PgP~~~PllGnl~~l~~-~~~~~~~~~~~~yG~i~~~~~g~~~--~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~----~ 108 (308)
+.|........+..... .+......+.+.||.++.++..+.- .+++++++++++++.++. .++++...... .
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~~v~~v~~~~~-~~~~~~~~~~~~~~~~ 83 (411)
T COG2124 5 PAPKLLGSPFALPRLLEFAPRFFLERAEDPYGDYFTLRLPGPGDGFWVVSRPADVREVLRDPR-FFSSALGAGLRPRLLR 83 (411)
T ss_pred CCCcccccchhhHHHhhcchhhhHHHHhCCCchhhhhhccCccceEEEEcCHHHHHHHHcCcc-cccccccccccccchh
Confidence 44444444334433322 2445667788889998888866644 899999999999998764 22222211111 1
Q ss_pred ccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHH
Q 040102 109 YLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRM 188 (308)
Q Consensus 109 ~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~ 188 (308)
.+ .+ .+.++..+|+.|+++||+++ +.|+++.++.|.+.+.+.++++++.+ . . +..+++.+.+..++++||| .
T Consensus 84 ~~-~~-~~~ll~~dg~~H~r~Rkl~~-~~F~~~~~~~~~~~i~~~~~~~~~~~-~--~-~~~~~v~~~a~~l~~~vi~-~ 155 (411)
T COG2124 84 PV-LG-DGSLLTLDGPEHTRLRKLLA-PAFTPRALRGYRPLIREIADRLLDDL-W--Q-GGADLVLDFAAELTLRVIA-E 155 (411)
T ss_pred hh-cc-ccceeecCCHHHHHHHHHhc-cccCHHHHHHHHHHHHHHHHHHHHhc-c--c-CCchhHHHHhhhhhHHHHH-H
Confidence 12 12 23244457999999999996 89999999999999999999999998 4 2 2678899999999999999 9
Q ss_pred HhcCcccCCchhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 040102 189 TMGQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETG 268 (308)
Q Consensus 189 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~ 268 (308)
+||.+.+ +...+.......... . .|.. .+.....+..++...+.++++++|++++.
T Consensus 156 l~Gv~~~----~~~~~~~~~~~~~~~---~-----~~~~---~~~~~~~~~~~a~~~~~~~~~~li~~rR~--------- 211 (411)
T COG2124 156 LLGVPLE----DRPQLLRWSDALLLR---L-----DPDL---GPEEPWRRARAARRELDAYLRALIAERRA--------- 211 (411)
T ss_pred HhCCCHH----HHHHHHHHHHHHHhc---c-----Cccc---CCcccHHHHHHHHHHHHHHHHHHHHHhcc---------
Confidence 9999873 222233322222111 0 0211 01122456778899999999999999872
Q ss_pred CCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 269 KDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 269 ~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
+...|+++.|+.+.++++ ..+||+||+++++++++|
T Consensus 212 --~~~~dlls~l~~a~~~~~--~~lsd~Ei~~~~~~ll~A 247 (411)
T COG2124 212 --APRDDLLSLLLSAEDDGG--GRLSDDEIRDELITLLVA 247 (411)
T ss_pred --CCcccHHHHHHHHhhCCC--CcCCHHHHHHHHHHHHHh
Confidence 246799999999876542 269999999999999987
No 33
>PF15117 UPF0697: Uncharacterised protein family UPF0697
Probab=76.29 E-value=0.53 Score=32.49 Aligned_cols=27 Identities=26% Similarity=0.173 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCC
Q 040102 9 VLFLVWLVSTILVRSIFRRSKTTSSLP 35 (308)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~p 35 (308)
+|++|.|||+.+.+|..+++++..++.
T Consensus 20 VYlivilvS~~l~~YarrNKrkImRif 46 (99)
T PF15117_consen 20 VYLIVILVSFGLFMYARRNKRKIMRIF 46 (99)
T ss_pred EEeehhHHhhHHHHhhhhcCceEEEEE
Confidence 578888999988889987777644443
No 34
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=71.05 E-value=16 Score=26.65 Aligned_cols=61 Identities=21% Similarity=0.292 Sum_probs=44.9
Q ss_pred CCCCCCCCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC------cCEEEecCHHHHHHHHHh
Q 040102 31 TSSLPPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS------VPCIVACSPETAKEILKT 93 (308)
Q Consensus 31 ~~~~pPgP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~------~~~vvi~d~e~~~evl~~ 93 (308)
..++||.-...-++-|++. +-..+.+.++..+||+|-.+++|. .-+||-.|-..||.+...
T Consensus 10 ~~rlppevnriLyirNLp~--~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dh 76 (124)
T KOG0114|consen 10 NIRLPPEVNRILYIRNLPF--KITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDH 76 (124)
T ss_pred CCCCChhhheeEEEecCCc--cccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHH
Confidence 3456666666777777743 222456777888999999999996 457888899999988864
No 35
>PLN03120 nucleic acid binding protein; Provisional
Probab=61.66 E-value=31 Score=29.76 Aligned_cols=60 Identities=10% Similarity=0.198 Sum_probs=47.3
Q ss_pred eeeecccCCCCchHHHHHHHHhcCCeeEEecC------CcCEEEecCHHHHHHHHHhcccccccCCcc
Q 040102 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG------SVPCIVACSPETAKEILKTHETSFCDRPIS 104 (308)
Q Consensus 43 llGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g------~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~ 104 (308)
++||+.. ..-...+.++...||+|..+.+. +.-+|...|++.++.++.-++..+.+|+..
T Consensus 8 fVgNLs~--~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~ 73 (260)
T PLN03120 8 KVSNVSL--KATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALLLSGATIVDQSVT 73 (260)
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEE
Confidence 6788753 33456788888889999999873 456788889999999998888888888743
No 36
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=60.88 E-value=29 Score=22.26 Aligned_cols=56 Identities=14% Similarity=0.212 Sum_probs=37.7
Q ss_pred eeeecccCCCCchHHHHHHHHhcCCeeEEecCC--------cCEEEecCHHHHHHHHH-hccccccc
Q 040102 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS--------VPCIVACSPETAKEILK-THETSFCD 100 (308)
Q Consensus 43 llGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~--------~~~vvi~d~e~~~evl~-~~~~~f~~ 100 (308)
++||++. ......+.++.++||++..+.+.. .-+|...+.+.++.++. -++..+.+
T Consensus 2 ~v~nlp~--~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~ 66 (70)
T PF00076_consen 2 YVGNLPP--DVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKING 66 (70)
T ss_dssp EEESETT--TSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred EEcCCCC--cCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECc
Confidence 4677753 233567888888999987766544 23566679999999997 34444433
No 37
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=54.29 E-value=25 Score=26.68 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=29.9
Q ss_pred chHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHh
Q 040102 54 PHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKT 93 (308)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~ 93 (308)
....+.+|.++||.+-- -.+...+...|++.++++...
T Consensus 76 v~~~i~~w~~~~g~v~l--~~~~~~l~~~d~~~l~~l~~~ 113 (129)
T PF13625_consen 76 VEQSIEDWARRYGRVRL--YKGAYLLECDDPELLDELLAD 113 (129)
T ss_pred HHHHHHHHHHhcCCEEE--ecCeEEEEECCHHHHHHHHhC
Confidence 34578999999997544 225788889999999999854
No 38
>smart00362 RRM_2 RNA recognition motif.
Probab=53.93 E-value=53 Score=20.58 Aligned_cols=39 Identities=18% Similarity=0.300 Sum_probs=28.5
Q ss_pred hHHHHHHHHhcCCeeEEecCCcC-------EEEecCHHHHHHHHHh
Q 040102 55 HQALHKLSIRYGPLIHLFLGSVP-------CIVACSPETAKEILKT 93 (308)
Q Consensus 55 ~~~~~~~~~~yG~i~~~~~g~~~-------~vvi~d~e~~~evl~~ 93 (308)
...+.++.++||++..+.+-..+ .|-..+++.++.++..
T Consensus 13 ~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~ 58 (72)
T smart00362 13 EEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEA 58 (72)
T ss_pred HHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHH
Confidence 45677788899988776655433 5666799999988854
No 39
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=52.10 E-value=41 Score=20.87 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=28.1
Q ss_pred HHHHHhcCCeeEEecCCcC----EEEecCHHHHHHHHHh-cccccccC
Q 040102 59 HKLSIRYGPLIHLFLGSVP----CIVACSPETAKEILKT-HETSFCDR 101 (308)
Q Consensus 59 ~~~~~~yG~i~~~~~g~~~----~vvi~d~e~~~evl~~-~~~~f~~R 101 (308)
.+...+||+|..+.+.... .|-..+++.|+.+... ++..|.+|
T Consensus 2 ~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~ 49 (56)
T PF13893_consen 2 YKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGR 49 (56)
T ss_dssp HHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTE
T ss_pred hHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 4566789999988876543 5555699999888852 33444444
No 40
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=52.04 E-value=39 Score=30.28 Aligned_cols=60 Identities=10% Similarity=0.077 Sum_probs=44.4
Q ss_pred CeeeecccCCCCchHHHHHHHHhcCCeeEEecCCcC---------EEEecCHHHHHHHHHh-cccccccCCc
Q 040102 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVP---------CIVACSPETAKEILKT-HETSFCDRPI 103 (308)
Q Consensus 42 PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~---------~vvi~d~e~~~evl~~-~~~~f~~Rp~ 103 (308)
=++||++. ..-...+.+....||+|..+.+-..+ +|...+++.+..++.. ++..+.+|+.
T Consensus 272 lfV~NL~~--~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i 341 (352)
T TIGR01661 272 IFVYNLSP--DTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVL 341 (352)
T ss_pred EEEeCCCC--CCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 47888764 23356788888899999999876544 8888899998888863 6666666653
No 41
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=51.12 E-value=35 Score=22.16 Aligned_cols=51 Identities=24% Similarity=0.273 Sum_probs=35.0
Q ss_pred eeeecccCCCCchHHHHHHHHhcCCeeEEecCCc--------CEEEecCHHHHHHHHHhcc
Q 040102 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSV--------PCIVACSPETAKEILKTHE 95 (308)
Q Consensus 43 llGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~--------~~vvi~d~e~~~evl~~~~ 95 (308)
+++|++. ......+.++...||++-.+.+... =+|-..+++.++.++....
T Consensus 2 ~i~nlp~--~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~ 60 (70)
T PF14259_consen 2 YISNLPP--STTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLN 60 (70)
T ss_dssp EEESSTT--T--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCC
Confidence 3566643 2334667778888998877776543 3677789999999997654
No 42
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=49.39 E-value=13 Score=28.26 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=9.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcc
Q 040102 6 GYIVLFLVWLVSTILVRSIFRRSK 29 (308)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~ 29 (308)
..|++++++|+ ++++.-..++++
T Consensus 7 iii~~i~l~~~-~~~~~~rRR~r~ 29 (130)
T PF12273_consen 7 IIIVAILLFLF-LFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHHH-HHHHHHHHHhhc
Confidence 33333333333 223344555554
No 43
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=45.53 E-value=29 Score=21.39 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhc
Q 040102 7 YIVLFLVWLVSTILVRSIFRRS 28 (308)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~ 28 (308)
|.++++.+++ +.+++|.++.+
T Consensus 14 ~~l~~~~~~F-igiv~wa~~p~ 34 (48)
T cd01324 14 WGLLYLALFF-LGVVVWAFRPG 34 (48)
T ss_pred HHHHHHHHHH-HHHHHHHhCCC
Confidence 4444444443 33455666433
No 44
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=43.70 E-value=60 Score=22.81 Aligned_cols=8 Identities=50% Similarity=1.124 Sum_probs=5.7
Q ss_pred CCCCCeee
Q 040102 38 PMALPIIG 45 (308)
Q Consensus 38 P~~~PllG 45 (308)
|-..|+||
T Consensus 64 PIYrPvI~ 71 (94)
T PF05393_consen 64 PIYRPVIG 71 (94)
T ss_pred Cccccccc
Confidence 45678888
No 45
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=40.15 E-value=90 Score=24.19 Aligned_cols=60 Identities=12% Similarity=0.099 Sum_probs=42.3
Q ss_pred CCeeeecccCCCCchHHHHHHHHhcCCeeEEecC---------CcCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 41 LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---------SVPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 41 ~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
.-+|||++.- .....+.++.++||+|..+.+- +-=+|-..+++.|+.++.. ++..+.+|+
T Consensus 36 ~lfVgnL~~~--~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~ 105 (144)
T PLN03134 36 KLFIGGLSWG--TDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRH 105 (144)
T ss_pred EEEEeCCCCC--CCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 3577887642 3356788888899998887763 2346777899999999964 445555654
No 46
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=40.06 E-value=66 Score=23.68 Aligned_cols=11 Identities=36% Similarity=0.489 Sum_probs=8.4
Q ss_pred CCCeeeecccC
Q 040102 40 ALPIIGHLHLL 50 (308)
Q Consensus 40 ~~PllGnl~~l 50 (308)
.-|+-||+...
T Consensus 45 ~~p~YgNL~~~ 55 (107)
T PF15330_consen 45 DDPCYGNLELQ 55 (107)
T ss_pred CCccccccccc
Confidence 47889998664
No 47
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=38.04 E-value=36 Score=26.47 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhc
Q 040102 6 GYIVLFLVWLVSTILVRSIFRRS 28 (308)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~ 28 (308)
||-++++++++++++.+|.+.++
T Consensus 22 GWwll~~lll~~~~~~~~~~~r~ 44 (146)
T PF14316_consen 22 GWWLLLALLLLLLILLLWRLWRR 44 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555444454555444333
No 48
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=38.03 E-value=1e+02 Score=19.28 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=30.7
Q ss_pred hHHHHHHHHhcCCeeEEecCCcC--------EEEecCHHHHHHHHHhcc
Q 040102 55 HQALHKLSIRYGPLIHLFLGSVP--------CIVACSPETAKEILKTHE 95 (308)
Q Consensus 55 ~~~~~~~~~~yG~i~~~~~g~~~--------~vvi~d~e~~~evl~~~~ 95 (308)
...+.++.+.||++..+.+-..+ .|-..+++.++.++..-.
T Consensus 13 ~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~ 61 (74)
T cd00590 13 EEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALN 61 (74)
T ss_pred HHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 56778888889998887766533 566689999999986543
No 49
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.76 E-value=41 Score=22.55 Aligned_cols=22 Identities=23% Similarity=0.304 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHH-HHHHhhc
Q 040102 7 YIVLFLVWLVSTILV-RSIFRRS 28 (308)
Q Consensus 7 ~~~~~~~~~~~~~~~-~~~~~~~ 28 (308)
|+++.+++|+..++. +|+.++.
T Consensus 6 ail~ivl~ll~G~~~G~fiark~ 28 (71)
T COG3763 6 AILLIVLALLAGLIGGFFIARKQ 28 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433333 4555444
No 50
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=33.09 E-value=1.6e+02 Score=27.98 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=31.8
Q ss_pred HhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCC
Q 040102 63 IRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 63 ~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
.+||.|++-.+-++.+-|=-=|+.=++=++++.+.|+.-+
T Consensus 221 Grfg~V~KaqL~~~~VAVKifp~~~kqs~~~Ek~Iy~lp~ 260 (534)
T KOG3653|consen 221 GRFGCVWKAQLDNRLVAVKIFPEQEKQSFQNEKNIYSLPG 260 (534)
T ss_pred CccceeehhhccCceeEEEecCHHHHHHHHhHHHHHhccC
Confidence 4789998888888888887777777888888878886643
No 51
>PF03742 PetN: PetN ; InterPro: IPR005497 PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or stability. It is found in bacteria and plants. Cytochrome b6-f complex is composed of 4 large subunits: cytochrome b6, subunit IV (17 kDa polypeptide, petD), cytochrome f and the Rieske protein, as well as 4 small subunits: petG, petL, petM and petN. The complex functions as a dimer. The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI) [].; GO: 0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity, 0017004 cytochrome complex assembly, 0009512 cytochrome b6f complex; PDB: 2ZT9_H 2D2C_H 2E76_H 1VF5_U 2E75_H 2E74_H.
Probab=32.84 E-value=87 Score=16.98 Aligned_cols=20 Identities=30% Similarity=0.341 Sum_probs=14.5
Q ss_pred chhhHHHHHHHHHHHHHHHH
Q 040102 4 FRGYIVLFLVWLVSTILVRS 23 (308)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ 23 (308)
-.||..+.+++-+|+-+++|
T Consensus 5 ~lgWaal~~~ftfSlalVVW 24 (29)
T PF03742_consen 5 SLGWAALMVVFTFSLALVVW 24 (29)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhccceeEEE
Confidence 35688888888887766555
No 52
>PF15050 SCIMP: SCIMP protein
Probab=32.06 E-value=1.2e+02 Score=22.71 Aligned_cols=15 Identities=33% Similarity=0.496 Sum_probs=9.6
Q ss_pred CCCCCC-CCCCeeeec
Q 040102 33 SLPPSP-MALPIIGHL 47 (308)
Q Consensus 33 ~~pPgP-~~~PllGnl 47 (308)
.+||-| .+.|+.|..
T Consensus 68 ~LPpLPPRg~~s~~~~ 83 (133)
T PF15050_consen 68 QLPPLPPRGSPSPEDS 83 (133)
T ss_pred CCCCCCCCCCCCcccc
Confidence 556644 467777766
No 53
>PF07400 IL11: Interleukin 11; InterPro: IPR020438 Interleukins (IL) are a group of cytokines that play an important role in the immune system. They modulate inflammation and immunity by regulating growth, mobility and differentiation of lymphoid and other cells. Interleukin-11 (IL-11) is a pleiotropic cytokine that stimulates megakaryocytopoiesis, resulting in increased production of platelets, as well as activating osteoclasts, inhibiting epithelial cell proliferation and apoptosis, and inhibiting macrophage mediator production. These functions may be particularly important in mediating the hematopoietic, osseous and mucosal protective effects of IL-11 []. The cytokine also possesses anti-inflammatory activity, and has been proposed as a therapeutic agent in the treatment of chronic inflammatory diseases, such as Crohn's disease and rheumatoid arthritis [].
Probab=31.75 E-value=34 Score=27.78 Aligned_cols=27 Identities=22% Similarity=0.424 Sum_probs=13.1
Q ss_pred HHHHHHHH-HHHHhhccCCCCCCCCCCC
Q 040102 14 WLVSTILV-RSIFRRSKTTSSLPPSPMA 40 (308)
Q Consensus 14 ~~~~~~~~-~~~~~~~~~~~~~pPgP~~ 40 (308)
|+|+++++ .++|-.+...-..||||+.
T Consensus 3 ~~c~~~~~~lsl~~~~~~a~~p~~~~~~ 30 (199)
T PF07400_consen 3 CVCRLVLVVLSLWPDRAAAPGPPPGPPR 30 (199)
T ss_pred cchhhHHHHHHhCCCcccCCCCCCCCCC
Confidence 44555444 3777444322223566664
No 54
>PHA02902 putative IMV membrane protein; Provisional
Probab=31.66 E-value=1.5e+02 Score=19.43 Aligned_cols=6 Identities=67% Similarity=1.143 Sum_probs=3.1
Q ss_pred HHHHHH
Q 040102 56 QALHKL 61 (308)
Q Consensus 56 ~~~~~~ 61 (308)
+.|+++
T Consensus 60 rAlHrl 65 (70)
T PHA02902 60 KALHRL 65 (70)
T ss_pred HHHHHH
Confidence 455554
No 55
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=30.35 E-value=11 Score=29.20 Aligned_cols=10 Identities=10% Similarity=-0.067 Sum_probs=4.2
Q ss_pred HHHHHHHHhh
Q 040102 18 TILVRSIFRR 27 (308)
Q Consensus 18 ~~~~~~~~~~ 27 (308)
.+=++|-|.+
T Consensus 26 giGcvwhwkh 35 (158)
T PF11770_consen 26 GIGCVWHWKH 35 (158)
T ss_pred hcceEEEeec
Confidence 3333455533
No 56
>PF09802 Sec66: Preprotein translocase subunit Sec66; InterPro: IPR018624 Members of this family of proteins are a component of the heterotetrameric Sec62/63 complex composed of SEC62, SEC63, SEC66 and SEC72. The Sec62/63 complex associates with the Sec61 complex to form the Sec complex. Sec 66 is involved in SRP-independent post-translational translocation across the endoplasmic reticulum and functions together with the Sec61 complex and KAR2 in a channel-forming translocon complex. Furthermore, Sec66 is also required for growth at elevated temperatures [, , , ].
Probab=29.91 E-value=50 Score=27.07 Aligned_cols=24 Identities=17% Similarity=0.011 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcc
Q 040102 5 RGYIVLFLVWLVSTILVRSIFRRSK 29 (308)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (308)
.++++|+.+.+.|+ ++++..+|++
T Consensus 7 ~~P~~Y~~vl~~sl-~~Fs~~YRkr 30 (190)
T PF09802_consen 7 YTPLAYVAVLVGSL-ATFSSIYRKR 30 (190)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 45778888777766 5664444443
No 57
>KOG4826 consensus C-8,7 sterol isomerase [Lipid transport and metabolism]
Probab=29.15 E-value=2.6e+02 Score=23.35 Aligned_cols=21 Identities=14% Similarity=0.051 Sum_probs=12.1
Q ss_pred hHHHHHHHHhcCCeeEEecCC
Q 040102 55 HQALHKLSIRYGPLIHLFLGS 75 (308)
Q Consensus 55 ~~~~~~~~~~yG~i~~~~~g~ 75 (308)
...+.+..|+|+..=+-|+++
T Consensus 90 s~~L~~~WKeYsk~D~RYv~~ 110 (229)
T KOG4826|consen 90 SALLAQLWKEYSKGDSRYVLT 110 (229)
T ss_pred HHHHHHHHHHhcccceeEecc
Confidence 456677778887543333333
No 58
>COG4459 NapE Periplasmic nitrate reductase system, NapE component [Energy production and conversion]
Probab=29.13 E-value=55 Score=20.91 Aligned_cols=6 Identities=50% Similarity=1.182 Sum_probs=4.3
Q ss_pred CCCCCC
Q 040102 35 PPSPMA 40 (308)
Q Consensus 35 pPgP~~ 40 (308)
||||++
T Consensus 56 PPGpp~ 61 (62)
T COG4459 56 PPGPPG 61 (62)
T ss_pred CCCCCC
Confidence 678775
No 59
>PRK11677 hypothetical protein; Provisional
Probab=28.01 E-value=81 Score=24.27 Aligned_cols=21 Identities=10% Similarity=0.079 Sum_probs=9.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 040102 5 RGYIVLFLVWLVSTILVRSIF 25 (308)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~ 25 (308)
|.|+..++.+++.+++++++.
T Consensus 1 M~W~~a~i~livG~iiG~~~~ 21 (134)
T PRK11677 1 MTWEYALIGLVVGIIIGAVAM 21 (134)
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 345555544444444444433
No 60
>PF01445 SH: Viral small hydrophobic protein; InterPro: IPR001477 The mumps virus SH protein is a membrane protein and not essential for virus growth []. Its function is unknown.; GO: 0016020 membrane
Probab=25.91 E-value=1.2e+02 Score=19.08 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 040102 9 VLFLVWLVSTILVRSIF 25 (308)
Q Consensus 9 ~~~~~~~~~~~~~~~~~ 25 (308)
..++..+..++.++|+|
T Consensus 11 tfLlLill~liiTLyVw 27 (57)
T PF01445_consen 11 TFLLLILLYLIITLYVW 27 (57)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444555577788888
No 61
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=25.52 E-value=2e+02 Score=21.68 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=30.7
Q ss_pred hhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHH
Q 040102 124 PYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNV 184 (308)
Q Consensus 124 ~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~v 184 (308)
.-|++.+.++. . +++.+....-..+-++...+....++....|++..+..+++.+
T Consensus 64 rIW~~Rq~l~~-~-----Al~Rls~~~L~~ll~~~a~iD~~iKg~~~~~~W~~L~~L~L~l 118 (125)
T PF14840_consen 64 RIWQKRQPLYQ-Q-----ALQRLSLQQLEQLLQLLAQIDRAIKGNYQGDPWDELEQLSLLL 118 (125)
T ss_dssp TT-CCHHHHHH-H-----HHHHS-HHHHHHHHHHHHHHHHHHHTSTTSTHHHHHHHHHHHT
T ss_pred CCCHhHHHHHH-H-----HHHcCCHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Confidence 56877777765 2 3333333333444445555554444455678999888877543
No 62
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=25.31 E-value=2.9e+02 Score=20.96 Aligned_cols=44 Identities=23% Similarity=0.446 Sum_probs=28.2
Q ss_pred HHHHHhcC------CeeEEecCC-cCEEEe-----cCHHHHHHHHHhcccccccCC
Q 040102 59 HKLSIRYG------PLIHLFLGS-VPCIVA-----CSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 59 ~~~~~~yG------~i~~~~~g~-~~~vvi-----~d~e~~~evl~~~~~~f~~Rp 102 (308)
.+++++|| |++.+..|+ .+.|-. -..+.++..+..++..|-++|
T Consensus 71 ~~Laery~i~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~~yiglp 126 (126)
T PF07912_consen 71 MELAERYKIDKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTGLYIGLP 126 (126)
T ss_dssp HHHHHHTT-SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS--TTST
T ss_pred HHHHHHhCCCcccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCCeeecCC
Confidence 56778886 777777754 555555 245778888877777776665
No 63
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=23.95 E-value=1.8e+02 Score=21.04 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCeeEEe--------------cCCcCEEEec--CHHHHHHHHHhccccccc
Q 040102 57 ALHKLSIRYGPLIHLF--------------LGSVPCIVAC--SPETAKEILKTHETSFCD 100 (308)
Q Consensus 57 ~~~~~~~~yG~i~~~~--------------~g~~~~vvi~--d~e~~~evl~~~~~~f~~ 100 (308)
..-+-.++||.|.... ..+..+|-|. ++..|+.+|.+++..+++
T Consensus 21 ~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g 80 (100)
T PF05172_consen 21 QVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSG 80 (100)
T ss_dssp HHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETT
T ss_pred HHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcC
Confidence 3444446799988774 3455666655 999999999999887754
No 64
>PF10361 DUF2434: Protein of unknown function (DUF2434); InterPro: IPR018830 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=23.37 E-value=95 Score=27.16 Aligned_cols=42 Identities=21% Similarity=0.225 Sum_probs=29.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCeeee
Q 040102 5 RGYIVLFLVWLVSTILVRSIFRRSKTTSSLPPSPMALPIIGH 46 (308)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pPgP~~~PllGn 46 (308)
+|.+++.+.+++.+.+++-+.+-++++...+|.++.+-.+|-
T Consensus 46 rg~vGI~fav~f~i~lvltLvnL~KHG~~~lp~eKRf~~iGR 87 (296)
T PF10361_consen 46 RGSVGIAFAVLFAIALVLTLVNLRKHGRLYLPLEKRFYPIGR 87 (296)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhcccccch
Confidence 456777777777666666777777777777899987666653
No 65
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=23.35 E-value=4.7e+02 Score=22.33 Aligned_cols=56 Identities=16% Similarity=0.100 Sum_probs=28.0
Q ss_pred CCCCeeeecccC-CCCchHHH-------HHHHHhcCCeeEEec-CCcCEEEecCHHHHHHHHHhcc
Q 040102 39 MALPIIGHLHLL-APIPHQAL-------HKLSIRYGPLIHLFL-GSVPCIVACSPETAKEILKTHE 95 (308)
Q Consensus 39 ~~~PllGnl~~l-~~~~~~~~-------~~~~~~yG~i~~~~~-g~~~~vvi~d~e~~~evl~~~~ 95 (308)
...-++|..... ...+...+ .+++++ |++-.+-+ |+...--.+.++..++.|.+.+
T Consensus 46 d~ivVLGa~~~~~~g~ps~~l~~Rl~~A~~LYk~-gk~~~ilvSGg~~~~~~~Ea~~M~~yLi~~G 110 (239)
T PRK10834 46 QVGVVLGTAKYYRTGVINQYYRYRIQGAINAYNS-GKVNYLLLSGDNALQSYNEPMTMRKDLIAAG 110 (239)
T ss_pred CEEEEcCCcccCCCCCcCHHHHHHHHHHHHHHHh-CCCCEEEEeCCCCCCCCCHHHHHHHHHHHcC
Confidence 445678876443 23344333 334443 54433333 3332223466777777777654
No 66
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=23.33 E-value=1.2e+02 Score=18.50 Aligned_cols=7 Identities=14% Similarity=0.107 Sum_probs=3.2
Q ss_pred HHHHhhc
Q 040102 22 RSIFRRS 28 (308)
Q Consensus 22 ~~~~~~~ 28 (308)
.|+++.+
T Consensus 27 ~w~~~~~ 33 (49)
T PF05545_consen 27 IWAYRPR 33 (49)
T ss_pred HHHHccc
Confidence 4555333
No 67
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.22 E-value=1.7e+02 Score=25.01 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhc
Q 040102 7 YIVLFLVWLVSTILVRSIFRRS 28 (308)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~ 28 (308)
|++++++.||..++.+.+|+++
T Consensus 6 ~vlVaa~llV~~i~l~l~~r~r 27 (299)
T KOG3054|consen 6 AVLVAAALLVAVILLFLWKRRR 27 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 5666666777554444444433
No 68
>PF09061 Stirrup: Stirrup; InterPro: IPR015146 The Stirrup domain, found in the prokaryotic protein ribonucleotide reductase, has a molecular mass of 9 kDa and is folded into an alpha/beta structure. It allows for binding of the reductase to DNA via electrostatic interactions, since it has a predominance of positive charges distributed on its surface []. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1DQ3_A.
Probab=23.21 E-value=1.7e+02 Score=19.23 Aligned_cols=16 Identities=19% Similarity=0.407 Sum_probs=12.0
Q ss_pred hHHHHHHHHhcCCeeE
Q 040102 55 HQALHKLSIRYGPLIH 70 (308)
Q Consensus 55 ~~~~~~~~~~yG~i~~ 70 (308)
...|.+|+.+||-=|.
T Consensus 9 f~afk~was~ygvefk 24 (79)
T PF09061_consen 9 FNAFKEWASKYGVEFK 24 (79)
T ss_dssp HHHHHHHHHTTT-EEE
T ss_pred HHHHHHHHHHhCeEEe
Confidence 5689999999995444
No 69
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=22.89 E-value=2.4e+02 Score=19.69 Aligned_cols=10 Identities=10% Similarity=0.205 Sum_probs=5.2
Q ss_pred hHHHHHHHHH
Q 040102 7 YIVLFLVWLV 16 (308)
Q Consensus 7 ~~~~~~~~~~ 16 (308)
||++.+-+.+
T Consensus 43 Wv~LA~FV~~ 52 (90)
T PF15183_consen 43 WVSLAAFVVF 52 (90)
T ss_pred HHHHHHHHHH
Confidence 6666544433
No 70
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=22.77 E-value=83 Score=19.18 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHH
Q 040102 7 YIVLFLVWLVSTI 19 (308)
Q Consensus 7 ~~~~~~~~~~~~~ 19 (308)
|++++++.++|+.
T Consensus 6 wiili~iv~~Cl~ 18 (47)
T PRK10299 6 WVVLVVVVLACLL 18 (47)
T ss_pred ehHHHHHHHHHHH
Confidence 7777777777664
No 71
>PF10812 DUF2561: Protein of unknown function (DUF2561); InterPro: IPR024381 This family of proteins with unknown function appears to be found predominantly in Mycobacterium spp.
Probab=22.58 E-value=1.1e+02 Score=25.11 Aligned_cols=22 Identities=5% Similarity=0.233 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHH----HHHHhhc
Q 040102 7 YIVLFLVWLVSTILV----RSIFRRS 28 (308)
Q Consensus 7 ~~~~~~~~~~~~~~~----~~~~~~~ 28 (308)
|++|.+++..+++++ +.++-++
T Consensus 64 WvLY~VI~VSaaVIagAVPlLLRARR 89 (207)
T PF10812_consen 64 WVLYAVIGVSAAVIAGAVPLLLRARR 89 (207)
T ss_pred EeehHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888888877776 2555444
No 72
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=22.04 E-value=4.8e+02 Score=21.88 Aligned_cols=106 Identities=15% Similarity=0.249 Sum_probs=65.2
Q ss_pred hHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcc---cccccCCccccccccccCCcceEeccCChhhhhhhh
Q 040102 55 HQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHE---TSFCDRPISAAVDYLTYGSADFSFAPYGPYWKFMKK 131 (308)
Q Consensus 55 ~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~---~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr 131 (308)
.....+..+++.|=|.+++|+.|. .-.|..+||+|...+ -..+|-|....-+.+-..|-|-++..-.+.--..|.
T Consensus 49 eaav~~~~e~~~pDfvi~isPNpa--aPGP~kARE~l~~s~~PaiiigDaPg~~vkdeleeqGlGYIivk~DpmiGArRE 126 (277)
T COG1927 49 EAAVTEMLEEFNPDFVIYISPNPA--APGPKKAREILSDSDVPAIIIGDAPGLKVKDELEEQGLGYIIVKADPMIGARRE 126 (277)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCC--CCCchHHHHHHhhcCCCEEEecCCccchhHHHHHhcCCeEEEecCCcccchhhh
Confidence 346678888999888999888775 468999999997432 233444543333333333334344444566666777
Q ss_pred HHHhhc----CChHHHhhh-----hHHHHHHHHHHHHHHHH
Q 040102 132 LCMTQL----LGGQTLNQF-----IPIRSEEIWRFMQLMLK 163 (308)
Q Consensus 132 ~~~~~~----fs~~~l~~~-----~~~~~~~~~~l~~~l~~ 163 (308)
++- |. |+...++-+ ..++++..+.+++....
T Consensus 127 FLD-PvEMA~fNaDv~kVLa~tGa~R~vQeaiD~~ie~vk~ 166 (277)
T COG1927 127 FLD-PVEMASFNADVMKVLAATGAFRLVQEAIDKVIEDVKE 166 (277)
T ss_pred hcC-HHHHHhhhhHHHHHHHhccHHHHHHHHHHHHHHHHhc
Confidence 763 43 776665533 34555666667766554
No 73
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=21.81 E-value=1.7e+02 Score=23.11 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=12.0
Q ss_pred HHHHhhccCCCCCCCCCC---CCCeeeec
Q 040102 22 RSIFRRSKTTSSLPPSPM---ALPIIGHL 47 (308)
Q Consensus 22 ~~~~~~~~~~~~~pPgP~---~~PllGnl 47 (308)
.|.+.+++. .+.||.|. +-|=-||-
T Consensus 167 ~~~F~RR~~-rrsppepsgdgG~~~~G~~ 194 (215)
T PF05084_consen 167 TWFFLRRTG-RRSPPEPSGDGGGNDAGNN 194 (215)
T ss_pred HHHHHHhhc-cCCCCCCCCCCCCCccccc
Confidence 344444432 24467665 34555543
No 74
>PF14990 DUF4516: Domain of unknown function (DUF4516)
Probab=21.30 E-value=2.1e+02 Score=17.57 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccC-CCCCCCCC
Q 040102 7 YIVLFLVWLVSTILVRSIFRRSKT-TSSLPPSP 38 (308)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~pPgP 38 (308)
|+-.+++.+.|.++...+.++..+ -..+|+-|
T Consensus 10 yl~~~~~s~~sM~aGA~vVH~~ykPdltiP~i~ 42 (47)
T PF14990_consen 10 YLKSLVASLLSMLAGASVVHNIYKPDLTIPEIP 42 (47)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhCccCCCCCCC
Confidence 455556666667666788877754 34555544
No 75
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=21.21 E-value=53 Score=19.45 Aligned_cols=8 Identities=13% Similarity=0.102 Sum_probs=3.4
Q ss_pred HHHHHhhc
Q 040102 21 VRSIFRRS 28 (308)
Q Consensus 21 ~~~~~~~~ 28 (308)
.+|+|+++
T Consensus 31 ~l~~~~rR 38 (40)
T PF08693_consen 31 FLFFWYRR 38 (40)
T ss_pred HhheEEec
Confidence 34544443
No 76
>smart00360 RRM RNA recognition motif.
Probab=21.16 E-value=2.1e+02 Score=17.44 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=28.4
Q ss_pred hHHHHHHHHhcCCeeEEecCCcC---------EEEecCHHHHHHHHHh
Q 040102 55 HQALHKLSIRYGPLIHLFLGSVP---------CIVACSPETAKEILKT 93 (308)
Q Consensus 55 ~~~~~~~~~~yG~i~~~~~g~~~---------~vvi~d~e~~~evl~~ 93 (308)
...+.++.+.||++..+.+-..+ .|...+++.++.++..
T Consensus 10 ~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~ 57 (71)
T smart00360 10 EEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEA 57 (71)
T ss_pred HHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHH
Confidence 45677788899998877765432 4667899999988753
No 77
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=20.86 E-value=33 Score=30.19 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcc
Q 040102 7 YIVLFLVWLVSTILVRSIFRRSK 29 (308)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~ 29 (308)
+|+++++.|++++++++.+++++
T Consensus 152 aVVI~~iLLIA~iIa~icyrrkR 174 (290)
T PF05454_consen 152 AVVIAAILLIAGIIACICYRRKR 174 (290)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Confidence 55666666665555555554433
No 78
>cd01646 RT_Bac_retron_I RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.
Probab=20.70 E-value=1.1e+02 Score=23.94 Aligned_cols=56 Identities=23% Similarity=0.178 Sum_probs=38.2
Q ss_pred CCCCCCCCCCCCeeeecccCCCCchHHHHHHHHh-cCCeeEEecCCcCEEEecCHHHHHHHHH
Q 040102 31 TSSLPPSPMALPIIGHLHLLAPIPHQALHKLSIR-YGPLIHLFLGSVPCIVACSPETAKEILK 92 (308)
Q Consensus 31 ~~~~pPgP~~~PllGnl~~l~~~~~~~~~~~~~~-yG~i~~~~~g~~~~vvi~d~e~~~evl~ 92 (308)
..-+|+|+..-|+++|+... .+.++.++ .+.+..++.-..-+++.++.+.+++++.
T Consensus 51 ~~GlpqG~~lS~~L~~~~l~------~~d~~i~~~~~~~~~~RY~DD~~i~~~~~~~~~~~~~ 107 (158)
T cd01646 51 TNGLPIGPLTSRFLANIYLN------DVDHELKSKLKGVDYVRYVDDIRIFADSKEEAEEILE 107 (158)
T ss_pred CceEccCcchHHHHHHHHHH------HHHHHHHhccCCceEEEecCcEEEEcCCHHHHHHHHH
Confidence 34678899999999998532 12222222 5667777777777788888887766653
No 79
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=20.65 E-value=1.2e+02 Score=29.05 Aligned_cols=34 Identities=15% Similarity=0.094 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 040102 7 YIVLFLVWLVSTILVRSIFRRSKTTSSLPPSPMA 40 (308)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pPgP~~ 40 (308)
|+++++++++|.++.+|-.....+.....|++.|
T Consensus 481 WIsvAliVLLAaLlSfLtg~~fq~~vdaAp~~~G 514 (538)
T PF05781_consen 481 WISVALIVLLAALLSFLTGLFFQRCVDAAPVGTG 514 (538)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhccCCCCCC
Confidence 7777777777666666554334445566777765
No 80
>PF15206 FAM209: FAM209 family
Probab=20.10 E-value=1.3e+02 Score=23.16 Aligned_cols=38 Identities=16% Similarity=0.360 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcc-----CCCCCCCCCCCCCee
Q 040102 6 GYIVLFLVWLVSTILVRSIFRRSK-----TTSSLPPSPMALPII 44 (308)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~pPgP~~~Pll 44 (308)
||+..--+||+ +++++|+.-+.+ .+..-|||..+.|+-
T Consensus 35 gWLgsKwlWL~-Fvv~lyvilKf~g~~~K~keq~p~glrg~~fr 77 (150)
T PF15206_consen 35 GWLGSKWLWLL-FVVVLYVILKFRGDSEKNKEQSPPGLRGCSFR 77 (150)
T ss_pred chhhhHHHHHH-HHHHHHheeEeccCcccccccCCCccCcccCC
Confidence 57777667776 555566663332 223447776665553
No 81
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=20.03 E-value=2.3e+02 Score=23.69 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHhh
Q 040102 11 FLVWLVSTILVRSIFRR 27 (308)
Q Consensus 11 ~~~~~~~~~~~~~~~~~ 27 (308)
....+++++...|+|++
T Consensus 91 ~~~~~~~~~~a~~~~r~ 107 (211)
T PF13194_consen 91 LAMALVGLLAALLLWRR 107 (211)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33444444455566655
Done!