Query 040102
Match_columns 308
No_of_seqs 112 out of 1154
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 07:46:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040102.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040102hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3swz_A Steroid 17-alpha-hydrox 100.0 2.2E-36 7.5E-41 283.9 22.9 268 30-308 5-284 (494)
2 3pm0_A Cypib1, cytochrome P450 100.0 3.7E-35 1.3E-39 276.1 17.8 272 29-308 5-290 (507)
3 3e6i_A CYPIIE1, P450-J, cytoch 100.0 1.1E-32 3.7E-37 257.2 22.0 265 29-308 6-278 (476)
4 3qz1_A Steroid 21-hydroxylase; 100.0 7E-34 2.4E-38 266.7 13.8 266 23-308 18-290 (496)
5 2hi4_A Cytochrome P450 1A2; CY 100.0 4.9E-33 1.7E-37 261.3 19.1 265 34-308 17-293 (495)
6 3tbg_A Cytochrome P450 2D6; mo 100.0 1.6E-32 5.4E-37 256.2 21.1 272 26-308 3-283 (479)
7 3s79_A Cytochrome P450 19A1; o 100.0 1.1E-32 3.7E-37 259.1 18.4 257 32-308 44-306 (503)
8 3czh_A Cytochrome P450 2R1; vi 100.0 1.3E-32 4.6E-37 257.6 17.8 266 31-308 10-284 (481)
9 2fdv_A Cytochrome P450 2A6; CY 100.0 4.1E-32 1.4E-36 253.8 19.8 266 29-308 6-279 (476)
10 1r9o_A Cytochrome P450 2C9; mo 100.0 5.7E-32 2E-36 252.8 20.8 268 28-308 6-280 (477)
11 3nxu_A Cytochrome P450 3A4; al 100.0 3.2E-33 1.1E-37 261.5 11.5 259 34-308 15-283 (485)
12 1po5_A Cytochrome P450 2B4; ox 100.0 3.2E-32 1.1E-36 254.5 18.1 262 30-308 7-279 (476)
13 3gw9_A Sterol 14alpha-demethyl 100.0 2.9E-32 9.9E-37 252.4 16.7 260 32-308 2-264 (450)
14 3k9v_A 1,25-dihydroxyvitamin D 100.0 4.7E-31 1.6E-35 246.4 19.9 261 28-308 19-294 (482)
15 3ld6_A Lanosterol 14-alpha dem 100.0 3.8E-31 1.3E-35 246.3 10.3 253 32-308 10-263 (461)
16 2ij2_A Cytochrome P450 BM3; mo 100.0 3.2E-29 1.1E-33 234.0 20.2 258 33-308 3-264 (470)
17 3n9y_A Cholesterol SIDE-chain 100.0 1.4E-28 4.9E-33 230.0 19.7 265 28-308 4-286 (487)
18 3i3k_A Lanosterol 14-alpha dem 100.0 8.8E-30 3E-34 236.9 11.1 254 30-308 8-263 (461)
19 2ve3_A Putative cytochrome P45 100.0 1.1E-28 3.6E-33 228.8 17.2 246 30-308 9-254 (444)
20 2cib_A Cytochrome P450 51; hem 100.0 2.1E-28 7.2E-33 227.5 17.0 251 33-308 4-256 (455)
21 3dbg_A Putative cytochrome P45 100.0 1.3E-28 4.4E-33 229.6 11.1 250 32-308 22-274 (467)
22 2cd8_A Cytochrome P450 monooxy 99.9 2.8E-27 9.7E-32 218.9 17.7 235 30-308 23-263 (436)
23 3v8d_A Cholesterol 7-alpha-mon 99.9 8.5E-28 2.9E-32 225.3 8.6 256 28-308 8-268 (491)
24 1jfb_A Nitric-oxide reductase 99.9 3.7E-25 1.3E-29 202.5 22.6 233 34-308 2-240 (404)
25 3mdm_A Cholesterol 24-hydroxyl 99.9 6.6E-25 2.2E-29 203.6 21.7 240 52-308 10-254 (456)
26 1cpt_A Cytochrome P450-TERP; o 99.9 1.3E-24 4.4E-29 200.5 17.3 245 31-308 4-267 (428)
27 1ued_A P450 OXYC, P450 monooxy 99.9 7.1E-24 2.4E-28 194.3 19.6 227 30-308 7-245 (406)
28 3dax_A Cytochrome P450 7A1; ch 99.9 4.9E-25 1.7E-29 206.2 11.7 257 27-308 7-268 (491)
29 2zbx_A Cytochrome P450-SU1; be 99.9 7E-23 2.4E-27 188.0 23.1 230 33-308 5-244 (412)
30 1izo_A P450bsbeta, cytochrome 99.9 3.4E-23 1.2E-27 190.3 19.3 233 39-306 6-241 (417)
31 3awm_A Fatty acid alpha-hydrox 99.9 4.4E-23 1.5E-27 189.4 19.9 234 35-306 4-240 (415)
32 3b6h_A Prostacyclin synthase; 99.9 1.4E-23 5E-28 196.8 13.1 261 23-308 8-273 (498)
33 2zwu_A Camphor 5-monooxygenase 99.9 1.7E-22 5.9E-27 185.6 17.4 229 30-308 8-249 (415)
34 3aba_A Cytochrome P450; oxidor 99.9 1.4E-21 4.8E-26 178.8 22.2 224 36-308 6-237 (403)
35 1s1f_A Putative cytochrome P45 99.9 3E-22 1E-26 183.5 16.9 228 32-308 7-242 (406)
36 3oo3_A OXY protein; cytochrome 99.9 1.7E-21 5.8E-26 177.0 21.7 212 51-308 11-226 (384)
37 3ivy_A Cytochrome P450 CYP125; 99.9 5.9E-22 2E-26 183.0 18.6 236 31-308 16-268 (433)
38 3abb_A CYP105D6, cytochrome P4 99.9 5.6E-22 1.9E-26 181.7 18.0 215 48-308 20-243 (408)
39 1n97_A CYP175A1; electron tran 99.9 2.2E-23 7.5E-28 189.9 7.8 148 36-195 2-150 (389)
40 3tyw_A Putative cytochrome P45 99.9 2.1E-21 7.2E-26 178.4 20.0 214 50-308 27-249 (417)
41 3tkt_A Cytochrome P450; aromat 99.9 2.9E-21 9.9E-26 179.2 20.5 226 54-308 47-289 (450)
42 2jjn_A Cytochrome P450 113A1; 99.9 1.4E-21 4.8E-26 179.2 17.1 231 24-308 10-241 (411)
43 1odo_A Putative cytochrome P45 99.9 1.9E-21 6.4E-26 178.2 17.1 220 49-308 12-242 (408)
44 4fb2_A P450CIN; heme, monooxyg 99.9 4.3E-21 1.5E-25 175.2 18.8 213 50-308 17-232 (398)
45 2wm5_A CYP124, putative cytoch 99.9 1.2E-20 4.1E-25 174.3 21.7 220 52-308 44-274 (435)
46 2y5n_A MYCG, P-450-like protei 99.9 9.7E-21 3.3E-25 174.0 20.3 215 50-308 35-254 (417)
47 3a4g_A Vitamin D hydroxylase; 99.9 7.6E-21 2.6E-25 174.4 18.8 213 50-308 18-236 (411)
48 3b98_A Prostaglandin I2 syntha 99.9 2.2E-22 7.4E-27 187.5 8.2 250 25-308 10-264 (475)
49 3ejb_B Biotin biosynthesis cyt 99.9 1.1E-20 3.7E-25 172.8 19.3 217 52-308 13-234 (404)
50 2z36_A MOXA, cytochrome P450 t 99.9 5.9E-21 2E-25 175.2 17.6 226 35-308 9-245 (413)
51 1z8o_A 6-deoxyerythronolide B 99.9 1E-20 3.4E-25 173.2 17.1 214 50-308 12-241 (404)
52 1q5d_A P450 epoxidase; cytochr 99.9 8.7E-21 3E-25 174.4 16.6 219 51-308 25-254 (419)
53 1gwi_A CYP154C1, cytochrome P4 99.9 2.1E-20 7.1E-25 171.5 18.6 215 49-308 14-242 (411)
54 2xkr_A CYP142, putative cytoch 99.8 5.5E-20 1.9E-24 167.9 20.3 212 52-308 18-230 (398)
55 3r9b_A Cytochrome P450 164A2; 99.8 2E-20 7E-25 171.7 15.6 220 51-308 28-256 (418)
56 3lxh_A Cytochrome P450; heme, 99.8 6.4E-20 2.2E-24 168.7 18.2 217 52-308 38-256 (421)
57 2uuq_A CYP130, cytochrome P450 99.8 8.6E-20 2.9E-24 167.5 17.7 223 43-308 11-250 (414)
58 2z3t_A Cytochrome P450; monoxy 99.8 8.3E-20 2.8E-24 168.2 17.1 218 52-308 20-254 (425)
59 3dsk_A Cytochrome P450 74A, ch 99.8 7.2E-21 2.4E-25 178.3 9.3 162 31-196 26-205 (495)
60 2xbk_A PIMD protein; epoxidati 99.8 6.9E-19 2.4E-23 161.0 20.4 208 50-308 24-241 (404)
61 3oft_A Cytochrome P450, CYP101 99.8 2.2E-19 7.4E-24 163.8 16.7 211 51-308 23-234 (396)
62 3nc3_A Cytochrome P450 CYPX; c 99.8 9.4E-20 3.2E-24 168.6 13.8 216 52-308 53-269 (441)
63 3buj_A CALO2; heme, iron, meta 99.8 4.3E-19 1.5E-23 161.9 17.6 213 52-308 13-233 (397)
64 2dkk_A Cytochrome P450; CYP158 99.8 2.7E-19 9.2E-24 164.1 16.1 212 51-308 26-245 (411)
65 1lfk_A OXYB, P450 monooxygenas 99.8 3.6E-19 1.2E-23 162.5 15.8 205 57-308 18-236 (398)
66 3mgx_A Putative P450 monooxyge 99.8 3.4E-19 1.2E-23 163.6 14.4 212 52-308 37-254 (415)
67 3rwl_A Cytochrome P450 alkane 99.8 1.1E-17 3.8E-22 154.0 20.0 218 52-308 38-265 (426)
68 3dan_A Cytochrome P450 74A2; A 99.8 6.2E-19 2.1E-23 164.0 10.1 163 31-196 7-187 (473)
69 1n40_A P450 MT2, cytochrome P4 99.8 4.3E-18 1.5E-22 155.3 14.2 211 50-308 14-233 (396)
70 3p3o_A Cytochrome P450; monoox 99.7 1.6E-18 5.4E-23 159.2 8.8 217 51-308 32-253 (416)
71 3b4x_A 367AA long hypothetical 99.7 2.2E-17 7.6E-22 149.1 14.5 199 54-308 1-210 (367)
72 2wiy_A XPLA-heme, cytochrome P 99.7 7.3E-17 2.5E-21 147.0 18.1 214 52-308 20-233 (394)
73 1io7_A Cytochrome P450 CYP119; 99.7 5.6E-17 1.9E-21 146.4 14.0 198 54-308 1-209 (368)
74 2rfb_A Cytochrome P450; heme, 99.7 4.4E-16 1.5E-20 139.2 11.4 186 63-308 2-188 (343)
75 4dxy_A Cytochrome P450, CYP101 99.5 7.1E-13 2.4E-17 121.5 19.1 217 52-308 37-255 (417)
76 4dnj_A Putative cytochrome P45 99.5 1.5E-13 5.2E-18 125.8 13.4 148 38-194 17-171 (412)
77 2yjn_B Erycii, DTDP-4-keto-6-d 98.2 8.3E-09 2.8E-13 93.1 -9.1 133 34-195 35-180 (381)
78 2diu_A KIAA0430 protein; struc 88.5 0.77 2.6E-05 32.0 4.8 62 42-104 12-77 (96)
79 3lqv_A PRE-mRNA branch site pr 86.3 3 0.0001 29.5 7.4 67 33-101 2-75 (115)
80 2krb_A Eukaryotic translation 83.3 4.9 0.00017 26.3 6.9 59 43-101 5-75 (81)
81 1iqt_A AUF1, heterogeneous nuc 82.5 2.9 9.8E-05 26.9 5.3 58 43-102 3-69 (75)
82 1s79_A Lupus LA protein; RRM, 82.3 3.5 0.00012 28.9 6.1 61 40-102 12-80 (103)
83 2mss_A Protein (musashi1); RNA 81.5 4.5 0.00015 26.0 6.1 58 43-102 3-69 (75)
84 4fxv_A ELAV-like protein 1; RN 78.5 5.2 0.00018 27.7 5.8 59 42-102 22-90 (99)
85 2dnz_A Probable RNA-binding pr 76.1 12 0.00041 25.1 7.2 66 36-103 2-77 (95)
86 1whx_A Hypothetical protein ri 75.7 12 0.00042 26.3 7.3 61 41-103 12-76 (111)
87 3mdf_A Peptidyl-prolyl CIS-tra 73.4 14 0.00047 24.1 6.8 64 37-102 5-78 (85)
88 2kxn_B Transformer-2 protein h 73.1 22 0.00075 25.7 8.3 65 36-102 43-117 (129)
89 2pe8_A Splicing factor 45; RRM 72.8 6.2 0.00021 27.7 5.0 69 34-102 3-85 (105)
90 2nlw_A Eukaryotic translation 71.5 15 0.00053 25.3 6.9 63 39-101 15-89 (105)
91 3md1_A Nuclear and cytoplasmic 71.0 11 0.00036 24.6 5.7 58 43-102 5-72 (83)
92 4a8x_A RNA-binding protein wit 70.9 14 0.00047 24.3 6.3 59 42-102 7-76 (88)
93 1x5u_A Splicing factor 3B subu 70.8 22 0.00076 24.2 8.6 63 39-103 15-87 (105)
94 3bs9_A Nucleolysin TIA-1 isofo 70.7 8.8 0.0003 25.3 5.3 61 40-102 7-77 (87)
95 3s7r_A Heterogeneous nuclear r 70.7 7.9 0.00027 25.6 5.0 64 37-102 9-81 (87)
96 2cqc_A Arginine/serine-rich sp 70.2 12 0.00042 25.0 6.1 66 35-102 11-86 (95)
97 1whw_A Hypothetical protein ri 70.2 19 0.00064 24.3 7.1 63 38-102 7-79 (99)
98 3s8s_A Histone-lysine N-methyl 69.7 11 0.00036 26.6 5.7 63 38-102 5-77 (110)
99 3ex7_B RNA-binding protein 8A; 69.7 18 0.00063 25.7 7.2 61 41-103 24-94 (126)
100 2jvr_A Nucleolar protein 3; RN 69.5 10 0.00036 26.9 5.6 62 39-102 28-96 (111)
101 2dhg_A TRNA selenocysteine ass 69.3 24 0.00082 24.0 7.5 67 35-103 5-82 (104)
102 3ucg_A Polyadenylate-binding p 69.2 9.5 0.00033 25.2 5.2 58 43-102 10-76 (89)
103 2dgv_A HnRNP M, heterogeneous 69.1 18 0.00062 23.9 6.7 62 39-102 8-77 (92)
104 2jwa_A Receptor tyrosine-prote 68.9 8 0.00027 22.5 3.9 22 7-28 18-39 (44)
105 2la6_A RNA-binding protein FUS 68.8 17 0.00059 24.6 6.6 62 39-102 13-92 (99)
106 1nu4_A U1A RNA binding domain; 67.9 18 0.0006 24.3 6.5 63 38-102 7-80 (97)
107 2hvz_A Splicing factor, argini 67.4 13 0.00044 25.4 5.7 59 43-103 4-67 (101)
108 2do4_A Squamous cell carcinoma 67.2 19 0.00065 24.4 6.6 62 39-102 17-87 (100)
109 1oo0_B CG8781-PA, drosophila Y 66.9 23 0.00079 24.4 7.1 59 42-102 29-97 (110)
110 1x5p_A Negative elongation fac 66.7 18 0.00061 24.4 6.3 61 38-102 14-78 (97)
111 2cq3_A RNA-binding protein 9; 66.5 21 0.00071 24.3 6.7 64 37-102 13-84 (103)
112 3beg_B Splicing factor, argini 65.9 20 0.00069 25.2 6.7 61 40-102 17-80 (115)
113 1p27_B RNA-binding protein 8A; 65.8 19 0.00066 24.6 6.4 59 42-102 26-94 (106)
114 2kvi_A Nuclear polyadenylated 65.8 21 0.00071 24.1 6.5 64 39-103 10-75 (96)
115 1uaw_A Mouse-musashi-1; RNP-ty 65.7 8.9 0.00031 24.5 4.3 58 43-102 4-70 (77)
116 2rs2_A Musashi-1, RNA-binding 65.6 16 0.00056 25.4 6.1 62 39-102 25-95 (109)
117 4f25_A Polyadenylate-binding p 65.4 14 0.00047 26.1 5.6 60 41-102 7-74 (115)
118 1sjq_A Polypyrimidine tract-bi 65.1 18 0.0006 25.5 6.0 65 37-103 14-84 (105)
119 2dgu_A Heterogeneous nuclear r 64.8 20 0.00069 24.5 6.4 62 39-102 11-74 (103)
120 2kn4_A Immunoglobulin G-bindin 64.6 30 0.001 25.7 7.8 62 39-102 70-141 (158)
121 3ns6_A Eukaryotic translation 64.5 17 0.00057 24.9 5.8 62 39-100 6-81 (100)
122 2div_A TRNA selenocysteine ass 64.3 20 0.00068 24.2 6.2 65 36-102 6-81 (99)
123 2dnp_A RNA-binding protein 14; 63.9 28 0.00097 22.9 7.6 65 36-102 6-72 (90)
124 2dgs_A DAZ-associated protein 63.9 30 0.001 23.2 7.5 64 38-103 9-81 (99)
125 1wi8_A EIF-4B, eukaryotic tran 63.9 21 0.00071 24.4 6.3 67 33-102 9-85 (104)
126 2dh8_A DAZ-associated protein 63.6 18 0.0006 24.8 5.9 64 37-102 14-86 (105)
127 1why_A Hypothetical protein ri 63.5 31 0.001 23.1 7.7 60 38-99 16-79 (97)
128 2cph_A RNA binding motif prote 63.2 33 0.0011 23.4 8.8 63 39-103 15-89 (107)
129 1wg5_A Heterogeneous nuclear r 62.9 24 0.00082 24.2 6.5 61 40-102 16-85 (104)
130 2d9p_A Polyadenylate-binding p 62.4 25 0.00087 23.9 6.5 66 35-102 11-84 (103)
131 2cqd_A RNA-binding region cont 62.2 20 0.00069 25.1 6.1 62 39-102 17-87 (116)
132 2e5h_A Zinc finger CCHC-type a 61.6 23 0.00077 23.6 6.0 63 37-101 14-86 (94)
133 2cpf_A RNA binding motif prote 61.4 21 0.00072 24.0 5.9 62 39-102 5-79 (98)
134 2ytc_A PRE-mRNA-splicing facto 61.2 30 0.001 22.4 7.0 61 40-102 13-78 (85)
135 1x5s_A Cold-inducible RNA-bind 60.5 30 0.001 23.4 6.6 65 37-103 10-84 (102)
136 1x4b_A Heterogeneous nuclear r 59.9 13 0.00045 26.1 4.7 60 41-102 29-97 (116)
137 2fy1_A RNA-binding motif prote 59.4 29 0.001 24.4 6.5 64 38-103 6-78 (116)
138 2cpz_A CUG triplet repeat RNA- 58.8 28 0.00097 24.2 6.3 61 40-102 26-96 (115)
139 2cpi_A CCR4-NOT transcription 58.5 8.2 0.00028 27.1 3.3 63 38-102 14-92 (111)
140 2i2y_A Fusion protein consists 58.2 42 0.0015 24.6 7.6 62 39-102 73-139 (150)
141 3p5t_L Cleavage and polyadenyl 57.9 20 0.00068 23.8 5.1 58 43-102 5-74 (90)
142 2dgt_A RNA-binding protein 30; 57.9 37 0.0013 22.4 6.6 63 38-102 9-73 (92)
143 2err_A Ataxin-2-binding protei 57.7 13 0.00046 25.9 4.3 61 40-102 30-98 (109)
144 2bz2_A Negative elongation fac 57.7 19 0.00065 25.8 5.2 59 40-102 40-102 (121)
145 2cjk_A Nuclear polyadenylated 57.0 30 0.001 25.7 6.6 60 41-102 89-157 (167)
146 2cqi_A Nucleolysin TIAR; RNA r 56.9 25 0.00086 23.9 5.7 62 39-102 15-84 (103)
147 1p1t_A Cleavage stimulation fa 56.8 27 0.00093 23.7 5.8 60 40-101 9-78 (104)
148 2xnq_A Nuclear polyadenylated 56.6 36 0.0012 22.9 6.4 60 41-101 24-85 (97)
149 2x1f_A MRNA 3'-END-processing 56.6 33 0.0011 22.9 6.2 60 41-102 4-73 (96)
150 2dgx_A KIAA0430 protein; RRM d 56.5 31 0.0011 23.1 6.0 61 40-102 10-81 (96)
151 1rk8_A CG8781-PA, CG8781-PA pr 56.5 22 0.00075 26.9 5.7 59 42-102 75-143 (165)
152 2jwn_A Embryonic polyadenylate 56.5 17 0.0006 25.8 4.9 59 42-102 39-106 (124)
153 2cq4_A RNA binding motif prote 56.5 19 0.00066 25.1 5.1 59 42-102 28-95 (114)
154 2dnm_A SRP46 splicing factor; 56.4 43 0.0015 22.6 6.9 63 39-103 13-85 (103)
155 2cqb_A Peptidyl-prolyl CIS-tra 56.4 22 0.00074 24.2 5.2 64 37-102 10-83 (102)
156 3ulh_A THO complex subunit 4; 56.1 24 0.00081 24.2 5.4 62 39-102 29-99 (107)
157 3n9u_C Cleavage and polyadenyl 55.9 27 0.00091 26.3 6.0 59 42-102 58-128 (156)
158 2ywk_A Putative RNA-binding pr 55.9 25 0.00086 23.4 5.4 63 38-102 15-86 (95)
159 2dnq_A RNA-binding protein 4B; 55.8 41 0.0014 22.1 7.2 65 36-102 5-71 (90)
160 1x4c_A Splicing factor, argini 55.3 44 0.0015 22.9 6.8 59 40-100 16-77 (108)
161 2dgo_A Cytotoxic granule-assoc 55.2 36 0.0012 23.6 6.4 63 38-102 14-86 (115)
162 2e5g_A U6 snRNA-specific termi 55.1 33 0.0011 22.8 6.0 60 41-102 10-73 (94)
163 1x4g_A Nucleolysin TIAR; struc 54.6 39 0.0013 23.2 6.4 61 40-102 26-90 (109)
164 2dng_A Eukaryotic translation 54.5 22 0.00076 24.2 5.0 67 33-102 9-84 (103)
165 2lea_A Serine/arginine-rich sp 54.5 39 0.0013 24.6 6.6 60 41-102 49-118 (135)
166 2voo_A Lupus LA protein; RNA-b 54.4 18 0.00061 28.4 5.0 59 42-102 112-178 (193)
167 3d2w_A TAR DNA-binding protein 54.2 30 0.001 23.0 5.5 54 35-90 7-64 (89)
168 2jrs_A RNA-binding protein 39; 53.8 39 0.0013 23.4 6.3 60 41-102 28-97 (108)
169 1fxl_A Paraneoplastic encephal 53.6 27 0.00093 25.8 5.8 59 42-102 5-73 (167)
170 2j76_E EIF-4B, EIF4B, eukaryot 53.6 26 0.00088 23.8 5.2 58 42-102 22-89 (100)
171 2ks1_B Epidermal growth factor 53.6 27 0.00093 20.3 4.3 6 23-28 33-38 (44)
172 2ad9_A Polypyrimidine tract-bi 53.3 40 0.0014 24.1 6.3 64 38-103 30-99 (119)
173 1x4d_A Matrin 3; structural ge 53.2 28 0.00097 24.1 5.4 68 35-103 11-84 (102)
174 2cpj_A Non-POU domain-containi 53.2 31 0.001 23.3 5.5 64 38-103 14-81 (99)
175 2a3j_A U1 small nuclear ribonu 53.0 31 0.0011 25.0 5.7 64 40-103 30-102 (127)
176 2hzc_A Splicing factor U2AF 65 52.6 33 0.0011 22.2 5.5 61 40-102 7-81 (87)
177 3s6e_A RNA-binding protein 39; 52.4 24 0.00083 25.1 5.0 69 34-102 2-84 (114)
178 2dis_A Unnamed protein product 52.2 49 0.0017 22.5 6.7 62 39-102 8-83 (109)
179 2cpe_A RNA-binding protein EWS 52.1 30 0.001 23.9 5.5 62 40-103 16-95 (113)
180 1x4e_A RNA binding motif, sing 52.0 23 0.00079 23.0 4.6 64 36-101 2-75 (85)
181 1l3k_A Heterogeneous nuclear r 51.6 29 0.00099 26.6 5.8 62 39-102 13-83 (196)
182 2jvo_A Nucleolar protein 3; nu 51.1 31 0.0011 23.9 5.4 60 41-102 33-94 (108)
183 1wf1_A RNA-binding protein RAL 51.0 39 0.0013 23.3 5.9 62 40-102 28-91 (110)
184 2cq1_A PTB-like protein L; RRM 49.8 37 0.0013 23.4 5.5 64 38-103 14-83 (101)
185 2la4_A Nuclear and cytoplasmic 49.4 44 0.0015 22.5 5.9 60 41-102 29-92 (101)
186 2cq0_A Eukaryotic translation 49.1 18 0.00062 24.7 3.8 63 38-102 14-86 (103)
187 2ki2_A SS-DNA binding protein 49.1 30 0.001 22.7 4.9 57 43-102 5-71 (90)
188 1l3k_A Heterogeneous nuclear r 48.7 29 0.00098 26.6 5.4 60 41-102 106-174 (196)
189 1sjr_A Polypyrimidine tract-bi 48.6 42 0.0014 25.7 6.0 56 42-99 49-110 (164)
190 2qfj_A FBP-interacting repress 48.3 54 0.0018 25.4 7.1 59 42-102 31-99 (216)
191 1x4a_A Splicing factor, argini 48.3 62 0.0021 22.1 7.7 61 40-102 23-90 (109)
192 2cpy_A RNA-binding protein 12; 48.3 18 0.0006 25.4 3.7 65 36-102 12-85 (114)
193 1h2v_Z 20 kDa nuclear CAP bind 48.1 48 0.0016 24.5 6.4 64 38-103 38-111 (156)
194 2e5j_A Methenyltetrahydrofolat 47.5 60 0.002 21.6 6.9 60 41-102 21-85 (97)
195 1u6f_A Tcubp1, RNA-binding pro 47.4 49 0.0017 23.8 6.3 60 41-102 44-113 (139)
196 2adc_A Polypyrimidine tract-bi 47.3 55 0.0019 26.0 7.1 62 41-103 36-102 (229)
197 2cpd_A Apobec-1 stimulating pr 47.2 61 0.0021 21.7 6.4 62 39-102 15-80 (99)
198 1x5t_A Splicing factor 3B subu 46.9 36 0.0012 22.6 5.1 63 38-102 4-77 (96)
199 3zzy_A Polypyrimidine tract-bi 46.9 35 0.0012 24.9 5.2 64 35-100 22-93 (130)
200 2dnh_A Bruno-like 5, RNA bindi 46.6 56 0.0019 22.1 6.1 61 38-100 14-83 (105)
201 2cqg_A TDP-43, TAR DNA-binding 46.4 64 0.0022 21.7 6.7 62 38-102 14-84 (103)
202 2khc_A Testis-specific RNP-typ 46.1 40 0.0014 23.5 5.4 58 42-101 43-110 (118)
203 2l2t_A Receptor tyrosine-prote 45.6 28 0.00095 20.2 3.4 6 23-28 32-37 (44)
204 2cpx_A Hypothetical protein FL 45.4 35 0.0012 23.6 5.0 65 37-103 23-97 (115)
205 2ku7_A MLL1 PHD3-CYP33 RRM chi 45.2 72 0.0025 22.8 6.9 51 41-93 65-124 (140)
206 2ghp_A U4/U6 snRNA-associated 45.0 32 0.0011 28.5 5.4 64 38-103 40-110 (292)
207 2xs2_A Deleted in azoospermia- 44.2 15 0.00051 25.1 2.7 59 41-102 11-77 (102)
208 3md3_A Nuclear and cytoplasmic 42.4 43 0.0015 24.6 5.4 58 43-102 4-70 (166)
209 1x4h_A RNA-binding protein 28; 42.3 79 0.0027 21.5 7.9 54 38-93 14-76 (111)
210 2d9o_A DNAJ (HSP40) homolog, s 42.1 70 0.0024 21.9 5.9 48 55-103 31-82 (100)
211 1qm9_A Polypyrimidine tract-bi 41.9 72 0.0024 24.4 6.8 60 43-103 7-71 (198)
212 3ue2_A Poly(U)-binding-splicin 41.4 44 0.0015 23.8 4.9 65 38-102 19-100 (118)
213 1b7f_A Protein (SXL-lethal pro 41.1 70 0.0024 23.5 6.4 60 41-102 5-74 (168)
214 2e44_A Insulin-like growth fac 40.8 76 0.0026 20.9 7.6 62 39-102 15-83 (96)
215 2cjk_A Nuclear polyadenylated 40.7 59 0.002 23.9 5.9 57 43-102 7-72 (167)
216 2wbr_A GW182, gawky, LD47780P; 40.2 63 0.0022 21.9 5.2 52 39-92 7-61 (89)
217 2do0_A HnRNP M, heterogeneous 39.5 90 0.0031 21.4 6.5 62 39-102 15-85 (114)
218 2dha_A FLJ20171 protein; RRM d 39.5 25 0.00086 25.3 3.4 62 38-101 22-95 (123)
219 3q2s_C Cleavage and polyadenyl 39.4 49 0.0017 26.6 5.5 58 42-101 71-140 (229)
220 3pgw_S U1-70K; protein-RNA com 39.3 54 0.0019 29.4 6.2 63 39-103 102-174 (437)
221 2hgm_A HNRPF protein, heteroge 39.3 66 0.0023 23.2 5.7 61 39-102 42-112 (126)
222 1x4f_A Matrin 3; structural ge 39.0 50 0.0017 23.3 4.8 66 37-103 23-94 (112)
223 1iij_A ERBB-2 receptor protein 38.8 8.4 0.00029 21.2 0.5 21 6-26 13-33 (35)
224 2kt5_A RNA and export factor-b 38.8 75 0.0026 22.3 6.0 60 41-102 37-105 (124)
225 2f3j_A RNA and export factor b 38.6 92 0.0031 23.8 6.8 58 43-102 92-158 (177)
226 1wez_A HnRNP H', FTP-3, hetero 38.5 28 0.00095 23.9 3.4 64 37-103 13-84 (102)
227 2qfj_A FBP-interacting repress 37.4 81 0.0028 24.3 6.5 60 41-102 127-196 (216)
228 2lxi_A RNA-binding protein 10; 36.5 47 0.0016 22.0 4.2 58 43-102 5-74 (91)
229 1wel_A RNA-binding protein 12; 36.1 25 0.00084 25.1 2.9 63 38-102 24-95 (124)
230 1wex_A Hypothetical protein (r 35.8 1E+02 0.0036 21.1 7.4 64 38-103 14-83 (104)
231 4f02_A Polyadenylate-binding p 35.8 67 0.0023 25.1 5.7 63 38-102 14-86 (213)
232 3r27_A HnRNP L, heterogeneous 35.4 1.1E+02 0.0037 21.1 6.6 54 38-93 20-76 (100)
233 2hgn_A Heterogeneous nuclear r 35.3 50 0.0017 24.3 4.5 61 40-103 47-115 (139)
234 4b19_A PEPA1; toxin, toxin apo 35.1 28 0.00095 18.3 2.1 17 10-27 11-27 (30)
235 4f02_A Polyadenylate-binding p 34.4 77 0.0026 24.8 5.9 60 41-102 105-172 (213)
236 2dnr_A Synaptojanin-1; RRM dom 34.2 78 0.0027 21.5 4.9 47 56-102 30-77 (91)
237 1whv_A Poly(A)-specific ribonu 34.1 65 0.0022 22.4 4.4 38 55-92 29-67 (100)
238 2lmi_A GRSF-1, G-rich sequence 33.9 75 0.0026 21.7 5.1 63 38-102 10-83 (107)
239 2g4b_A Splicing factor U2AF 65 33.9 89 0.0031 23.0 6.0 62 39-102 94-165 (172)
240 2cqh_A IGF-II mRNA-binding pro 33.2 1E+02 0.0035 20.1 5.6 65 36-102 5-74 (93)
241 1wf0_A TDP-43, TAR DNA-binding 32.8 63 0.0022 21.0 4.4 50 40-91 6-59 (88)
242 1b7f_A Protein (SXL-lethal pro 32.6 1.1E+02 0.0037 22.3 6.3 52 39-92 89-149 (168)
243 2ek1_A RNA-binding protein 12; 32.6 28 0.00095 23.1 2.5 61 40-102 16-86 (95)
244 2dnn_A RNA-binding protein 12; 32.2 68 0.0023 22.3 4.6 59 41-102 18-84 (109)
245 2dit_A HIV TAT specific factor 32.2 59 0.002 22.5 4.3 68 35-102 11-93 (112)
246 2yh0_A Splicing factor U2AF 65 31.8 74 0.0025 24.1 5.3 60 41-102 116-185 (198)
247 1q90_N Cytochrome B6F complex 31.4 60 0.0021 17.1 3.0 20 5-24 8-27 (31)
248 2l6w_A Beta-type platelet-deri 37.0 10 0.00036 21.3 0.0 20 9-28 16-35 (39)
249 2hgl_A HNRPF protein, heteroge 30.8 38 0.0013 24.9 3.1 61 40-102 45-116 (136)
250 2e5i_A Heterogeneous nuclear r 30.8 91 0.0031 22.4 5.2 56 43-100 29-89 (124)
251 2cq2_A Hypothetical protein LO 30.6 1.4E+02 0.0049 21.0 6.6 55 37-93 23-82 (114)
252 1fxl_A Paraneoplastic encephal 29.8 1.6E+02 0.0054 21.3 7.0 60 40-101 89-158 (167)
253 2dgw_A Probable RNA-binding pr 28.9 1.1E+02 0.0037 19.9 5.1 62 38-102 9-78 (91)
254 2dgp_A Bruno-like 4, RNA bindi 28.8 1.3E+02 0.0045 20.1 7.3 53 38-92 12-73 (106)
255 2db1_A Heterogeneous nuclear r 28.5 33 0.0011 24.2 2.5 60 41-102 19-89 (118)
256 3ctr_A Poly(A)-specific ribonu 25.9 43 0.0015 23.3 2.4 47 55-101 19-68 (101)
257 3tyt_A Heterogeneous nuclear r 25.1 1.5E+02 0.0051 23.1 6.0 63 40-103 5-72 (205)
258 1b35_D CRPV, protein (cricket 24.9 28 0.00096 20.6 1.1 11 40-50 30-40 (57)
259 1jmt_A Splicing factor U2AF 35 24.4 1.3E+02 0.0045 20.5 5.0 40 63-102 49-97 (104)
260 2g4b_A Splicing factor U2AF 65 23.8 1.2E+02 0.0042 22.2 5.1 59 42-102 7-79 (172)
261 3md3_A Nuclear and cytoplasmic 23.2 1.7E+02 0.006 21.0 5.9 62 39-102 87-158 (166)
262 2fc9_A NCL protein; structure 22.8 79 0.0027 21.1 3.5 65 36-102 12-82 (101)
263 1ufw_A Synaptojanin 2; RNP dom 22.4 1.3E+02 0.0046 20.6 4.4 47 56-102 39-86 (95)
264 3nmr_A Cugbp ELAV-like family 21.8 1.7E+02 0.0058 21.4 5.6 53 39-93 95-155 (175)
265 3sde_A Paraspeckle component 1 21.2 1.1E+02 0.0038 24.7 4.7 61 41-103 24-88 (261)
266 2m2b_A RNA-binding protein 10; 20.5 2E+02 0.0069 20.2 5.5 61 40-103 24-100 (131)
267 3pgw_A U1-A; protein-RNA compl 20.3 1.8E+02 0.0062 23.5 5.9 64 39-102 9-81 (282)
No 1
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=100.00 E-value=2.2e-36 Score=283.86 Aligned_cols=268 Identities=22% Similarity=0.350 Sum_probs=203.1
Q ss_pred CCCCCCCCCCCCCeeeecccCC--CCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCccccc
Q 040102 30 TTSSLPPSPMALPIIGHLHLLA--PIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAV 107 (308)
Q Consensus 30 ~~~~~pPgP~~~PllGnl~~l~--~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~ 107 (308)
+..++||||+++|++||++++. ..++..+.+|.++||++|++++|++++|||+||++++++|++++..|++||.....
T Consensus 5 ~~~~~PPgP~~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~~k~il~~~~~~f~~rp~~~~~ 84 (494)
T 3swz_A 5 TGAKYPKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATL 84 (494)
T ss_dssp -------CCBCCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTBBCCCCHHH
T ss_pred CCCCCCCCCCCCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCCCCEEEECCHHHHHHHHHhCcHhhCCCCCcHHH
Confidence 3457899999999999999984 35789999999999999999999999999999999999999999999999976555
Q ss_pred cccccCCcceEeccCChhhhhhhhHHHhhcCCh--HHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHH
Q 040102 108 DYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGG--QTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVV 185 (308)
Q Consensus 108 ~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~--~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi 185 (308)
+....++.+++++++|+.||.+||+++ +.|+. ..++.+.+++.+++..+++.|.+ ..+.++|+...+.++++|+|
T Consensus 85 ~~~~~~~~gl~~~~~g~~wr~~Rr~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~--~~~~~vd~~~~~~~~t~dvi 161 (494)
T 3swz_A 85 DIASNNRKGIAFADSGAHWQLHRRLAM-ATFALFKDGDQKLEKIICQEISTLCDMLAT--HNGQSIDISFPVFVAVTNVI 161 (494)
T ss_dssp HHHTTTTCSSSSSCSSHHHHHHHHHHH-HHTTTTSSSTTCHHHHHHHHHHHHHHHHHH--TTTEEECCHHHHHHHHHHHH
T ss_pred HHhccCCCCeEeCCCCHHHHHHHHHHH-HHHHHhcchHHHHHHHHHHHHHHHHHHHHH--cCCCcccHHHHHHHHHHHHH
Confidence 544444456667777999999999996 77863 45678899999999999999876 34678999999999999999
Q ss_pred HHHHhcCcccCCchhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 040102 186 SRMTMGQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINK 265 (308)
Q Consensus 186 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 265 (308)
+.++||.+++..+.....+....+.+........+.+++|+++++ +....+++.+..+.++++++++++++++..+
T Consensus 162 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~-p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--- 237 (494)
T 3swz_A 162 SLICFNTSYKNGDPELNVIQNYNEGIIDNLSKDSLVDLVPWLKIF-PNKTLEKLKSHVKIRNDLLNKILENYKEKFR--- 237 (494)
T ss_dssp HHHHHSCCCCTTCTHHHHHHHHHHHHHHHHCSSSSCCSSCGGGTS-CCSHHHHHHHHHHHHHHHHHHHHHHHTTTCC---
T ss_pred HHHHcCCcCCCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---
Confidence 999999998543222233333444444444445577889998776 3334566777778888888888887754321
Q ss_pred ccCCCCCCCCHHHHHhhcccccc--------ccCCCCHHHHHHHHHHHhcC
Q 040102 266 ETGKDYAPMDLLDMLLDISEDES--------SEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 266 ~~~~~~~~~d~l~~ll~~~~~~~--------~~~~lt~~~i~~~~~~l~~A 308 (308)
. ....|+++.||+...+.+ .+..+++++|.+++.++++|
T Consensus 238 ---~-~~~~d~l~~ll~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~A 284 (494)
T 3swz_A 238 ---S-DSITNMLDTLMQAKMNSDNGNAGPDQDSELLSDNHILTTIGDIFGA 284 (494)
T ss_dssp ---T-TCCCSHHHHHHHHHHTSCCC----CCSSGGGCHHHHHHHHHHHHHH
T ss_pred ---c-cchhHHHHHHHHHHHhhhcccccccccccccCHHHHHHHHHHHhhc
Confidence 1 246799999998642110 12259999999999998875
No 2
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.7e-35 Score=276.05 Aligned_cols=272 Identities=22% Similarity=0.353 Sum_probs=188.9
Q ss_pred cCCCCCCCCCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCcccccc
Q 040102 29 KTTSSLPPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAVD 108 (308)
Q Consensus 29 ~~~~~~pPgP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~~ 108 (308)
++..+.||||+++|++||++++..+++..+.+|.++||++|++++|+.++|+|+||+++++||++++..|++||......
T Consensus 5 ~~~~~~pPgP~~~P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~~~ 84 (507)
T 3pm0_A 5 TSSKGKPPGPFAWPLIGNAAAVGQAAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQGSAFADRPSFASFR 84 (507)
T ss_dssp -----------------------CCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTSCBCCCCHHHH
T ss_pred cCCCCCCcCCCCCCeeCchhhcCccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCcchHHH
Confidence 34457899999999999999998788999999999999999999999999999999999999999999999998765544
Q ss_pred ccccCCcceEeccCChhhhhhhhHHHhhcCChHH------HhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHH
Q 040102 109 YLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQT------LNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTN 182 (308)
Q Consensus 109 ~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~------l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~ 182 (308)
.... +.+++++.+|+.|+.+||+++ +.|+... ++.+.+.+.++++.+++.+.+..+++.++|+.+.+.++++
T Consensus 85 ~~~~-g~~l~~~~~g~~w~~~R~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~ 162 (507)
T 3pm0_A 85 VVSG-GRSMAFGHYSEHWKVQRRAAH-SMMRNFFTRQPRSRQVLEGHVLSEARELVALLVRGSADGAFLDPRPLTVVAVA 162 (507)
T ss_dssp HGGG-GTCSSSSCSSHHHHHHHHHHH-HHHHHSTTSSTTHHHHHHHHHHHHHHHHHHHHHHTTGGGCCBCCHHHHHHHHH
T ss_pred hhcC-CCceEECCCChHHHHHHHHHH-HHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhcccCCCcChHHHHHHHHH
Confidence 4432 345656667999999999986 5544322 3448899999999999999875444678999999999999
Q ss_pred HHHHHHHhcCcccCCchhHHHHHHHHHHHHHHhCCCCcccccccccccccc--chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040102 183 NVVSRMTMGQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQ--GFGKRLKEVRRKFDDMMERILKEHQEA 260 (308)
Q Consensus 183 ~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~--~~~~~~~~~~~~~~~~~~~ii~~~~~~ 260 (308)
|+|+.++||.+++..+.....+.+.+...........+.+++|++++++.. +..+++.+..+.+.+++.+++++++++
T Consensus 163 dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 242 (507)
T 3pm0_A 163 NVMSAVCFGCRYSHDDPEFRELLSHNEEFGRTVGAGSLVDVMPWLQYFPNPVRTVFREFEQLNRNFSNFILDKFLRHCES 242 (507)
T ss_dssp HHHHHHHTSCCCCTTCHHHHHHTSCHHHHHHHHSTTCCTTTCGGGGGSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccccCCCCCHHHHHHHHHHHHHHHhcccchHHHHhHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999998543222234444445555554444456778988765211 135667777888889999999988765
Q ss_pred hhhhhccCCCCCCCCHHHHHhhccccccc------cCCCCHHHHHHHHHHHhcC
Q 040102 261 RKINKETGKDYAPMDLLDMLLDISEDESS------EIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 261 ~~~~~~~~~~~~~~d~l~~ll~~~~~~~~------~~~lt~~~i~~~~~~l~~A 308 (308)
.+ . + ....|+++.|++..+..+. +..+|+++|.+++.++++|
T Consensus 243 ~~----~-~-~~~~d~l~~ll~~~~~~~~~~~~~~~~~l~~~~i~~~~~~l~~A 290 (507)
T 3pm0_A 243 LR----P-G-AAPRDMMDAFILSAEKKAAGDSHGGGARLDLENVPATITDIFGA 290 (507)
T ss_dssp CC----T-T-CCCCSHHHHHHHHHHHHHSCC----CCCCCGGGHHHHHHHHHHH
T ss_pred cc----c-c-cCCccHHHHHHHHhhhhccccccCCCCCCCHHHHHHHHHHHHhc
Confidence 42 1 1 2467999999966432110 1259999999999999875
No 3
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=100.00 E-value=1.1e-32 Score=257.20 Aligned_cols=265 Identities=23% Similarity=0.312 Sum_probs=197.7
Q ss_pred cCCCCCCCCCCCCCeeeecccC-CCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCccccc
Q 040102 29 KTTSSLPPSPMALPIIGHLHLL-APIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAV 107 (308)
Q Consensus 29 ~~~~~~pPgP~~~PllGnl~~l-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~ 107 (308)
++..++||||+++|++||++++ ..+++..+.+|.++||++|++++|++++|+++||+++++||.+++..|++||.....
T Consensus 6 ~~~~~lpPgP~~~PliG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~~~~v~~il~~~~~~f~~r~~~~~~ 85 (476)
T 3e6i_A 6 SSKGKLPPGPFPLPIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVKEALLDYKDEFSGRGDLPAF 85 (476)
T ss_dssp ----CCCCCCCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTSTTTTCEECCCGGG
T ss_pred cCCCCCCcCCCCcccccChhhhccccHhHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcchHhhCCCCCCchh
Confidence 3456789999999999999998 477899999999999999999999999999999999999999999999999876555
Q ss_pred cccccCCcceEeccCChhhhhhhhHHHhhcCChHHH--hhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHH
Q 040102 108 DYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTL--NQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVV 185 (308)
Q Consensus 108 ~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l--~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi 185 (308)
..+.. + +++ ..+|+.|+++||++. +.|+...+ +.+.+.+.++++.+++.|.+. .+.++|+.+.+.++++|+|
T Consensus 86 ~~~~~-~-~l~-~~~g~~w~~~Rr~~~-~~l~~~~~~~~~~~~~i~~~~~~l~~~l~~~--~~~~~d~~~~~~~~~~dvi 159 (476)
T 3e6i_A 86 HAHRD-R-GII-FNNGPTWKDIRRFSL-TTLRNYGMGKQGNESRIQREAHFLLEALRKT--QGQPFDPTFLIGCAPCNVI 159 (476)
T ss_dssp GGGTT-S-SST-TCCSTTHHHHHHHHH-HHHHHTC-CCSHHHHHHHHHHHHHHHHHHTT--TTSCBCTHHHHTHHHHHHH
T ss_pred heecC-C-CEE-ecCCcHHHHHHHHHH-HHHHhcCCCchHHHHHHHHHHHHHHHHHHHh--CCCCcChHHHHHHHHHHHH
Confidence 44432 2 444 457999999999875 55554333 345688889999999998763 4678999999999999999
Q ss_pred HHHHhcCcccCCchhHHHHHHHHHHHHHHhCCC--Ccccccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040102 186 SRMTMGQICSINDKEADEVRKLVQETAELTGKF--NLQDYIW-FCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARK 262 (308)
Q Consensus 186 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~P-~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 262 (308)
+.++||.+++..+.....+.+.+.+.+...... .+.+.+| ++.++ ++..++..+..+.+++++.++|+++++..+
T Consensus 160 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l--p~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 237 (476)
T 3e6i_A 160 ADILFRKHFDYNDEKFLRLMYLFNENFHLLSTPWLQLYNNFPSFLHYL--PGSHRKVIKNVAEVKEYVSERVKEHHQSLD 237 (476)
T ss_dssp HHHHHSCCCCTTCHHHHHHHHHHHHHHHHTTSHHHHHHHHSHHHHTTS--CSHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHcCCCCCCCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHc--CcHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999998543222234444444444433221 1234566 44444 244566777888899999999998876532
Q ss_pred hhhccCCCCCCCCHHHHHhhccccc--cccCCCCHHHHHHHHHHHhcC
Q 040102 263 INKETGKDYAPMDLLDMLLDISEDE--SSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 263 ~~~~~~~~~~~~d~l~~ll~~~~~~--~~~~~lt~~~i~~~~~~l~~A 308 (308)
. ...+|+++.|++...++ +++..+|+++|.+++.++++|
T Consensus 238 ------~-~~~~d~~~~ll~~~~~~~~~~~~~l~~~~i~~~~~~~~~A 278 (476)
T 3e6i_A 238 ------P-NCPRDLTDCLLVEMEKEKHSAERLYTMDGITVTVADLFFA 278 (476)
T ss_dssp ------T-TSCCSHHHHHHHHHHSSSSCSSCSCCHHHHHHHHHHHHHH
T ss_pred ------C-CCCccHHHHHHHHHHhcccCCCCCcCHHHHHHHHHHHHhc
Confidence 1 24579999999765332 112359999999999999875
No 4
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus}
Probab=100.00 E-value=7e-34 Score=266.75 Aligned_cols=266 Identities=23% Similarity=0.262 Sum_probs=195.4
Q ss_pred HHHhhc-cCCCCCCCCCCCCCeeeecccC-CCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhccccccc
Q 040102 23 SIFRRS-KTTSSLPPSPMALPIIGHLHLL-APIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCD 100 (308)
Q Consensus 23 ~~~~~~-~~~~~~pPgP~~~PllGnl~~l-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~ 100 (308)
++++++ ++..++||||++ ++++ ..+++..+.+|.++|||++++++|+.++|+++||+++++||.+++..|++
T Consensus 18 ~~~~~~~~~~~~lPPGP~~------l~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~~f~~ 91 (496)
T 3qz1_A 18 LLWGRWKLRNLHLPPLVPG------FLHLLQPNLPIHLLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIRKWVDFAG 91 (496)
T ss_dssp -----------CCCCBCSC------SCTTSSSCHHHHHHHGGGTSCSEEEECSSSSCEEEECSTTHHHHTTTTSCSTTCB
T ss_pred HHHhhhhccCCCCCcCCcc------ccccCCCcchHHHHHHHHHhCCEEEEEeCCcCEEEECCHHHHHHHHHhCcHhhCC
Confidence 444333 455689999987 5555 57789999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHH
Q 040102 101 RPISAAVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRL 180 (308)
Q Consensus 101 Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~ 180 (308)
||..........+..+++++++|+.|+.+||+++ +.|+.+.++.+.+.+.++++.+++.+.+ ..++++|+.+.+.++
T Consensus 92 r~~~~~~~~~~~~~~~l~~~~~g~~w~~~Rr~~~-~~f~~~~~~~~~~~i~~~~~~l~~~l~~--~~~~~vd~~~~~~~~ 168 (496)
T 3qz1_A 92 RPQIPSYKLVSQRCQDISLGDYSLLWKAHKKLTR-SALLLGTRSSMEPWVDQLTQEFCERMRV--QAGAPVTIQKEFSLL 168 (496)
T ss_dssp CCCCTTTTTSCTTCCCSSSSCCSHHHHHHHHHHH-HHHHC--CCCHHHHHHHHHHHHHHHHHT--TCSCCCHHHHHHTHH
T ss_pred CCCcchHHHhcCCCCceEECCCCHHHHHHHHHHH-HHHhhccHhhHHHHHHHHHHHHHHHHHh--cCCCccCHHHHHHHH
Confidence 9876555444333335666655999999999996 7888777888999999999999999986 346789999999999
Q ss_pred HHHHHHHHHhcCcccCCchhHHHHHHHHHHHHHHhCC--CCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 040102 181 TNNVVSRMTMGQICSINDKEADEVRKLVQETAELTGK--FNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQ 258 (308)
Q Consensus 181 t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~ 258 (308)
++|+|++++||. . . +.....+.+.+......... ..+.+++|+++++ +.+..+++.+..+.+++++.+++++++
T Consensus 169 ~~dvi~~~~fG~-~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l-p~~~~~~~~~~~~~~~~~~~~~i~~~~ 244 (496)
T 3qz1_A 169 TCSIICYLTFGN-K-E-DTLVHAFHDCVQDLMKTWDHWSIQILDMVPFLRFF-PNPGLWRLKQAIENRDHMVEKQLRRHK 244 (496)
T ss_dssp HHHHTTTTSTTC-C-C-HHHHHHHHHHHHTTTTTTSSHHHHHHHHCGGGCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-C-C-ChHHHHHHHHHHHHHHHhccchhHHHHhHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 2 1 11223444444433222221 1245677877765 334456778888899999999999887
Q ss_pred HHhhhhhccCCCCCCCCHHHHHhhccccc--ccc-CCCCHHHHHHHHHHHhcC
Q 040102 259 EARKINKETGKDYAPMDLLDMLLDISEDE--SSE-IKLTRENIKAFILDIFAA 308 (308)
Q Consensus 259 ~~~~~~~~~~~~~~~~d~l~~ll~~~~~~--~~~-~~lt~~~i~~~~~~l~~A 308 (308)
++.+ . ...+|+++.|++...+. +++ ..+|+++|.+++.++++|
T Consensus 245 ~~~~----~---~~~~d~l~~ll~~~~~~~~~~~~~~l~~~~i~~~~~~l~~A 290 (496)
T 3qz1_A 245 ESMV----A---GQWRDMTDYMLQGVGRQRVEEGPGQLLEGHVHMSVVDLFIG 290 (496)
T ss_dssp HSCC----S---SCCSSSHHHHTTSSTTCCC-----CCCTHHHHHHHHHHHHH
T ss_pred hhcc----C---CCccchHHHHHHHHHhccccCCcccccHHHHHHHHHHHHHh
Confidence 6532 1 24679999999886432 111 269999999999999875
No 5
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.9e-33 Score=261.34 Aligned_cols=265 Identities=23% Similarity=0.343 Sum_probs=197.1
Q ss_pred CCCCCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCccccccccccC
Q 040102 34 LPPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAVDYLTYG 113 (308)
Q Consensus 34 ~pPgP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~~~~~~~ 113 (308)
.+|||+++|++||++++..+++..+.+|.++||||+++++|+.++++++||+++++|+.+++..|++||.......+. +
T Consensus 17 ~~PgP~~~p~~G~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~i~~il~~~~~~f~~r~~~~~~~~~~-~ 95 (495)
T 2hi4_A 17 SPPEPWGWPLLGHVLTLGKNPHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQALVRQGDDFKGRPDLYTSTLIT-D 95 (495)
T ss_dssp CCCCCCCBTTTBTHHHHTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTGGGSCBCCCCHHHHTST-T
T ss_pred CCCCCCCCcceeeHHhcCccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhcchhhCCCCCcHHHHHhc-C
Confidence 349999999999998887778899999999999999999999999999999999999998888899888654333332 2
Q ss_pred CcceEec-cCChhhhhhhhHHHhhcC---ChHHH---h---hhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHH
Q 040102 114 SADFSFA-PYGPYWKFMKKLCMTQLL---GGQTL---N---QFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNN 183 (308)
Q Consensus 114 ~~~~~~~-~~g~~Wk~~Rr~~~~~~f---s~~~l---~---~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~ 183 (308)
+.+++++ ++|+.|+.+||++. +.| +..++ + .+.+.+.++++.+++.|.+...+++++|+.+.+.++++|
T Consensus 96 ~~~l~~~~~~g~~w~~~Rr~~~-~~f~~~s~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~d~~~~~~~~~~d 174 (495)
T 2hi4_A 96 GQSLTFSTDSGPVWAARRRLAQ-NALNTFSIASDPASSSSCYLEEHVSKEAKALISRLQELMAGPGHFDPYNQVVVSVAN 174 (495)
T ss_dssp SCCTTTSSCCSHHHHHHHHHHH-HHHHHTTTSBCSSCSSCBHHHHHHHHHHHHHHHHHHHHHHTTSCBCHHHHHHHHHHH
T ss_pred CCCEEEcCCCChHHHHHHHHHH-HHHHHhccCcccccchhhhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHH
Confidence 2345554 47999999999996 654 43332 2 688999999999999997643446789999999999999
Q ss_pred HHHHHHhcCcccCCchhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040102 184 VVSRMTMGQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKI 263 (308)
Q Consensus 184 vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 263 (308)
+|++++||.+++..+.+..++.+..+..........+.+++|+++++ +.+..++..+..+.+.+++.++|+++++..+
T Consensus 175 vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l-p~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~- 252 (495)
T 2hi4_A 175 VIGAMCFGQHFPESSDEMLSLVKNTHEFVETASSGNPLDFFPILRYL-PNPALQRFKAFNQRFLWFLQKTVQEHYQDFD- 252 (495)
T ss_dssp HHHHHHHGGGSCTTCHHHHHHHTTTHHHHTTSSTTCGGGTCGGGGGS-CCHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcccchHHHHhHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Confidence 99999999988532222233333334443332222345678887665 2233456777888899999999998876431
Q ss_pred hhccCCCCCCCCHHHHHhhcccc--ccccCCCCHHHHHHHHHHHhcC
Q 040102 264 NKETGKDYAPMDLLDMLLDISED--ESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 264 ~~~~~~~~~~~d~l~~ll~~~~~--~~~~~~lt~~~i~~~~~~l~~A 308 (308)
. ....|+++.|++...+ .+++..+|+++|.+++.++++|
T Consensus 253 -----~-~~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~~~l~~A 293 (495)
T 2hi4_A 253 -----K-NSVRDITGALFKHSKKGPRASGNLIPQEKIVNLVNDIFGA 293 (495)
T ss_dssp -----T-TCCCSHHHHHHHHHHHCCEETTEECCTHHHHTHHHHHHHH
T ss_pred -----c-cccccHHHHHHHHhhhccCccccCCCHHHHHHHHHHHHHh
Confidence 1 2457999999965321 1112369999999999999875
No 6
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=100.00 E-value=1.6e-32 Score=256.21 Aligned_cols=272 Identities=22% Similarity=0.360 Sum_probs=187.8
Q ss_pred hhccCCCCCCCCCCCCCeeeecccC-CCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCcc
Q 040102 26 RRSKTTSSLPPSPMALPIIGHLHLL-APIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPIS 104 (308)
Q Consensus 26 ~~~~~~~~~pPgP~~~PllGnl~~l-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~ 104 (308)
++.++++++||||+++|+|||++++ .++++..+.+|+++|||||++++|++++|||+||+++++||++++..|++||..
T Consensus 3 ~~~ss~~kLPPGP~~lP~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~i~~vl~~~~~~f~~r~~~ 82 (479)
T 3tbg_A 3 KKTSSKGKLPPGPLPLPGLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPV 82 (479)
T ss_dssp ------CCCCCCSCCBTTTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEETTEEEEEEEHHHHHHHHHTTTGGGSCBCCCC
T ss_pred CCCCCCCCCCCCCCCcCcccchHhhcCCCHHHHHHHHHHHhCCEEEEEECCeeEEEECCHHHHHHHHHhCChhhcCCCch
Confidence 3444566899999999999999998 477889999999999999999999999999999999999999999999999987
Q ss_pred ccccccccC--CcceEeccCChhhhhhhhHHHhhcCChHHHh--hhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHH
Q 040102 105 AAVDYLTYG--SADFSFAPYGPYWKFMKKLCMTQLLGGQTLN--QFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRL 180 (308)
Q Consensus 105 ~~~~~~~~~--~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~--~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~ 180 (308)
...+.+..+ +.+++++.+|+.|+.+|+++. +.|+...+. .+.+.+......+...+.. ..+.++|+...+.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~ 159 (479)
T 3tbg_A 83 PITQILGFGPRSQGVFLARYGPAWREQRRFSV-STLRNLGLGKKSLEQWVTEEAACLCAAFAN--HSGRPFRPNGLLDKA 159 (479)
T ss_dssp GGGGGGTCBTTBCCSTTCCSSHHHHHHHHHHH-HHHHHTTSTTCHHHHHHHHHHHHHHHHHHT--TTTCCBCTHHHHHHH
T ss_pred HHHHHhccCCCCCceeeCCCCHHHHHHHHHHH-HHhcchhhhHHHHHHHHHHHHHHHHHHHHh--ccCCcccHHHHHHHH
Confidence 666554432 234566778999999999986 677665553 2345555556666666554 346789999999999
Q ss_pred HHHHHHHHHhcCcccCCchhHHHHHHHHHHHHHHhCCCC--ccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 040102 181 TNNVVSRMTMGQICSINDKEADEVRKLVQETAELTGKFN--LQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQ 258 (308)
Q Consensus 181 t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~ 258 (308)
++++++.++||.+++..+.....+.+............. ....+|+..+ .....++.....+...+.+.+.+.++.
T Consensus 160 ~~~~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (479)
T 3tbg_A 160 VSNVIASLTCGRRFEYDDPRFLRLLDLAQEGLKEESGFLREVLNAVPVLLH--IPALAGKVLRFQKAFLTQLDELLTEHR 237 (479)
T ss_dssp HHHHHHHHHHSCCCCTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHSGGGGG--SHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCcccccchhhhhhhhhhhhhhhhhhhhhhhhhcccchhcc--chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999986533333333333333222221110 1112232222 222344555566667777777777776
Q ss_pred HHhhhhhccCCCCCCCCHHHHHhhcccc--ccccCCCCHHHHHHHHHHHhcC
Q 040102 259 EARKINKETGKDYAPMDLLDMLLDISED--ESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 259 ~~~~~~~~~~~~~~~~d~l~~ll~~~~~--~~~~~~lt~~~i~~~~~~l~~A 308 (308)
+..+ . . ...+|+++.++..... .+.+..+|+++|.+++.++++|
T Consensus 238 ~~~~----~-~-~~~~d~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~A 283 (479)
T 3tbg_A 238 MTWD----P-A-QPPRDLTEAFLAEMEKAKGNPESSFNDENLRIVVADLFSA 283 (479)
T ss_dssp HHCC----T-T-SCCCSHHHHHHHHHHHTTTCTTCSCSHHHHHHHHHHHHHH
T ss_pred Hhhh----c-c-cccchhhhhhhhhhhhcccCCccchhhHHHHHHHHHHHHh
Confidence 5432 1 1 2467888877654321 1113469999999999999875
No 7
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A*
Probab=100.00 E-value=1.1e-32 Score=259.06 Aligned_cols=257 Identities=18% Similarity=0.188 Sum_probs=189.2
Q ss_pred CCCCCCCCCCCeeeecccCCC----CchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCccccc
Q 040102 32 SSLPPSPMALPIIGHLHLLAP----IPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAV 107 (308)
Q Consensus 32 ~~~pPgP~~~PllGnl~~l~~----~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~ 107 (308)
.+.||||+++|++||++++.. ..+..+.+|+++|||++++++|++++||++||++++++|.+ ..|++||.....
T Consensus 44 ~~~pPGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~il~~--~~~~~r~~~~~~ 121 (503)
T 3s79_A 44 TSSIPGPGYCMGIGPLISHGRFLWMGIGSACNYYNRVYGEFMRVWISGEETLIISKSSSMFHIMKH--NHYSSRFGSKLG 121 (503)
T ss_dssp -CCCCSCCCCSSSHHHHHHHHHHHHCHHHHHHHHHHHSCSEEEEESSSSEEEEECCHHHHHHHHHS--GGGCCCCCCHHH
T ss_pred cCCCCCCCCCceeeehhccccccccchhHHHHHHHHHhCCeEEEEeCCccEEEECCHHHHHHHHhc--CCCCCcchhhhh
Confidence 467999999999999988732 34568899999999999999999999999999999999954 478888754322
Q ss_pred -cccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHH
Q 040102 108 -DYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVS 186 (308)
Q Consensus 108 -~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~ 186 (308)
......+.+++++.+|+.|+.+||+++ +.|+..+++.+.+.+.+++.++++.|.+..+.+.++|+.+.+.++++++|+
T Consensus 122 ~~~~~~~~~~~~~~~~g~~w~~~Rr~~~-~~f~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~vdl~~~~~~~~~~vi~ 200 (503)
T 3s79_A 122 LQCIGMHEKGIIFNNNPELWKTTRPFFM-KALSGPGLVRMVTVCAESLKTHLDRLEEVTNESGYVDVLTLLRRVMLDTSN 200 (503)
T ss_dssp HHHHTCTTSSSTTCCCHHHHHHHHHHHH-HHTSTHHHHHHHHHHHHHHHHHHTTGGGTBCTTSCBCHHHHHHHHHHHHHH
T ss_pred hhhhccCCCceeeCCCccHHHHHHHhhh-HhhChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHHHHHHH
Confidence 222223345566678999999999996 899999999999999999999999887654446789999999999999999
Q ss_pred HHHhcCcccCCchhHHHHHHHHHHHHHHhCC-CCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 040102 187 RMTMGQICSINDKEADEVRKLVQETAELTGK-FNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINK 265 (308)
Q Consensus 187 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 265 (308)
+++||.+++. +++.+.+......... ....++++.+.+ ..++..+..+.+++++.++|+++++..+
T Consensus 201 ~~~fG~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~--- 267 (503)
T 3s79_A 201 TLFLRIPLDE-----SAIVVKIQGYFDAWQALLIKPDIFFKISW-----LYKKYEKSVKDLKDAIEVLIAEKRRRIS--- 267 (503)
T ss_dssp HHHTCCCCCH-----HHHHHHHHHHHHHHHHHTTCCHHHHHSGG-----GTHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHcCcccCc-----hhHHHHHHHHHHHHHHHhcCcHHHhhcch-----hHHHHHHHHHHHHHHHHHHHHHHHHHhh---
Confidence 9999998832 1222222222221111 001112211111 1356677888899999999999887653
Q ss_pred ccCCCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 266 ETGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 266 ~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
..+......|+++.|++..++ ..+|+++|.+++.++++|
T Consensus 268 ~~~~~~~~~d~l~~ll~~~~~----~~l~~~~i~~~~~~~~~A 306 (503)
T 3s79_A 268 TEEKLEECMDFATELILAEKR----GDLTRENVNQCILEMLIA 306 (503)
T ss_dssp TCTTTTTTCCHHHHHHHHHHT----TSSCHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhccc----CCCCHHHHHHHHHHHHHH
Confidence 111111345999999987543 269999999999998875
No 8
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug metabolism, structural genomics, structural genomics consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens} SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Probab=100.00 E-value=1.3e-32 Score=257.57 Aligned_cols=266 Identities=21% Similarity=0.301 Sum_probs=199.1
Q ss_pred CCCCCCCCCCCCeeeecccCC-CC--chHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCccccc
Q 040102 31 TSSLPPSPMALPIIGHLHLLA-PI--PHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAV 107 (308)
Q Consensus 31 ~~~~pPgP~~~PllGnl~~l~-~~--~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~ 107 (308)
..++||||+++|++||++++. .. ++..+.+|.++|||++++++|+.++++++||+++++|+.+++..|++||.....
T Consensus 10 ~~~lpPgP~~~p~~G~~~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~vl~~~~~~f~~~~~~~~~ 89 (481)
T 3czh_A 10 PMGFPPGPPGLPFIGNIYSLAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPLF 89 (481)
T ss_dssp --CCCCCCCCBTTTBHHHHHHHCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEEESHHHHHHHHTTTTTTTCBCCCCHHH
T ss_pred CCCCCCCCCCCcccccHhhcCcccCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhhchHhhCCCCCcHHH
Confidence 456899999999999998873 33 789999999999999999999999999999999999999888889998754333
Q ss_pred cccccCCcceEeccCChhhhhhhhHHHhhcCChHHH--hhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHH
Q 040102 108 DYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTL--NQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVV 185 (308)
Q Consensus 108 ~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l--~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi 185 (308)
..+.. +.+++++.+|+.|+.+||++. +.|+...+ +.+.+.+.++++.+++.+.+. ++.++|+.+.+.++++|+|
T Consensus 90 ~~~~~-~~~~~~~~~g~~w~~~R~~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~--~~~~~d~~~~~~~~~~~vi 165 (481)
T 3czh_A 90 MKMTK-MGGLLNSRYGRGWVDHRRLAV-NSFRYFGYGQKSFESKILEETKFFNDAIETY--KGRPFDFKQLITNAVSNIT 165 (481)
T ss_dssp HHHHT-TCSSTTCCSSHHHHHHHHHHH-HHHHHTTTTSTTHHHHHHHHHHHHHHHHHTT--TTCCBCCHHHHHHHHHHHH
T ss_pred HhhcC-CCCeEeCCCChHHHHHHHHHH-HHHHHhcCChHHHHHHHHHHHHHHHHHHHHc--CCCCcCHHHHHHHHHHHHH
Confidence 33322 234455568999999999996 78876543 678899999999999999763 3568999999999999999
Q ss_pred HHHHhcCcccCCchhHHHHHHHHHHHHHHhCCCC--ccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040102 186 SRMTMGQICSINDKEADEVRKLVQETAELTGKFN--LQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKI 263 (308)
Q Consensus 186 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 263 (308)
++++||.+++..+.+..++.+.+........... +.+++|++.++ +.+..++..+..+.+.+++.++|++++++.+
T Consensus 166 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l-p~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~- 243 (481)
T 3czh_A 166 NLIIFGERFTYEDTDFQHMIELFSENVELAASASVFLYNAFPWIGIL-PFGKHQQLFRNAAVVYDFLSRLIEKASVNRK- 243 (481)
T ss_dssp HHHHHSSCCCTTCHHHHHHHHHHHHHHHHTTSHHHHHHHHCGGGGGC-SSSHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHcCCCCCCCCHHHHHHHHHHHHHHhhhccchhHHhhhhHHHHhC-CchHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 9999999885322222344444454444332211 34567887554 2233466777888889999999988875421
Q ss_pred hhccCCCCCCCCHHHHHhhccccc--cccCCCCHHHHHHHHHHHhcC
Q 040102 264 NKETGKDYAPMDLLDMLLDISEDE--SSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 264 ~~~~~~~~~~~d~l~~ll~~~~~~--~~~~~lt~~~i~~~~~~l~~A 308 (308)
. ....|+++.|++..++. +++..+|+++|++++.++++|
T Consensus 244 -----~-~~~~d~l~~ll~~~~~~~~~~~~~l~~~ei~~~~~~l~~A 284 (481)
T 3czh_A 244 -----P-QLPQHFVDAYLDEMDQGKNDPSSTFSKENLIFSVGELIIA 284 (481)
T ss_dssp -----T-TCCSSHHHHHHHHHHHTTTCTTCCCCHHHHHHHHHHHHHH
T ss_pred -----C-CchHHHHHHHHHHHHhcccCccccccHHHHHHHHHHHHHh
Confidence 1 24579999999775321 112369999999999999875
No 9
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Probab=100.00 E-value=4.1e-32 Score=253.81 Aligned_cols=266 Identities=21% Similarity=0.334 Sum_probs=199.4
Q ss_pred cCCCCCCCCCCCCCeeeecccC-CCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCccccc
Q 040102 29 KTTSSLPPSPMALPIIGHLHLL-APIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAV 107 (308)
Q Consensus 29 ~~~~~~pPgP~~~PllGnl~~l-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~ 107 (308)
++..++||||+++|++||++++ ..+++..+.+|.++|||++++++|+.++|+++||+++++||.+++..|++||.....
T Consensus 6 ~~~~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~~~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~ 85 (476)
T 2fdv_A 6 SSKGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEEFSGRGEQATF 85 (476)
T ss_dssp --CCBCCCCCCCBTTTBTGGGCCTTBHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCCHHH
T ss_pred cccCCCCCCCCCCcccccHhhcCCcchHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcChHhhCCCCCcHHH
Confidence 3444679999999999999998 567889999999999999999999999999999999999998888889888754333
Q ss_pred cccccCCcceEeccCChhhhhhhhHHHhhcCChHHH--hhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHH
Q 040102 108 DYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTL--NQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVV 185 (308)
Q Consensus 108 ~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l--~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi 185 (308)
..... +.++++ .+|+.|+.+||++. +.|+...+ +.+.+.+.++++.+++.|.+. .+.++|+.+.+.++++++|
T Consensus 86 ~~~~~-~~~l~~-~~g~~~~~~Rr~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~--~~~~vd~~~~~~~~~~~vi 160 (476)
T 2fdv_A 86 DWVFK-GYGVVF-SNGERAKQLRRFSI-ATLRDFGVGKRGIEERIQEEAGFLIDALRGT--GGANIDPTFFLSRTVSNVI 160 (476)
T ss_dssp HHHHT-TCSSSS-CCHHHHHHHHHHHH-HHHHHTTTTSHHHHHHHHHHHHHHHHHHHHT--TTCCBCCHHHHHHHHHHHH
T ss_pred hhhcC-CCCeEe-cCchHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHhc--CCCccChHHHHHHHHHHHH
Confidence 32222 234544 47999999999986 78887766 788999999999999999763 3568999999999999999
Q ss_pred HHHHhcCcccCCchhHHHHHHHHHHHHHHhCCC--Cccccccc-cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040102 186 SRMTMGQICSINDKEADEVRKLVQETAELTGKF--NLQDYIWF-CKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARK 262 (308)
Q Consensus 186 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~P~-l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 262 (308)
++++||.+++..+.+..++.+.+.......... .+.+++|+ ++++ ++..+++.+..+.+.+++.++|++++++.+
T Consensus 161 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l--~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~ 238 (476)
T 2fdv_A 161 SSIVFGDRFDYKDKEFLSLLRMMLGIFQFTSTSTGQLYEMFSSVMKHL--PGPQQQAFQLLQGLEDFIAKKVEHNQRTLD 238 (476)
T ss_dssp HHHHHSSCCCTTCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCcCCCCCHHHHHHHHHHHHHHHhhcccccchhhhhhhHHHhc--CcHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999998532222234444444444332211 12346676 4444 233466777888899999999988865321
Q ss_pred hhhccCCCCCCCCHHHHHhhccccc--cccCCCCHHHHHHHHHHHhcC
Q 040102 263 INKETGKDYAPMDLLDMLLDISEDE--SSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 263 ~~~~~~~~~~~~d~l~~ll~~~~~~--~~~~~lt~~~i~~~~~~l~~A 308 (308)
. ...+|+++.|++..++. +++..+|+++|.+++.++++|
T Consensus 239 ------~-~~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~~~~~~A 279 (476)
T 2fdv_A 239 ------P-NSPRDFIDSFLIRMQEEEKNPNTEFYLKNLVMTTLNLFIG 279 (476)
T ss_dssp ------T-TSCCSHHHHHHHHHHHTTTCTTCSCSHHHHHHHHHHHHHH
T ss_pred ------C-CCCccHHHHHHHHHHhcccCccccccHHHHHHHHHHHHHh
Confidence 1 24579999999765321 112369999999999999875
No 10
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Probab=100.00 E-value=5.7e-32 Score=252.81 Aligned_cols=268 Identities=21% Similarity=0.295 Sum_probs=187.6
Q ss_pred ccCCCCCCCCCCCCCeeeecccC-CCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCcccc
Q 040102 28 SKTTSSLPPSPMALPIIGHLHLL-APIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAA 106 (308)
Q Consensus 28 ~~~~~~~pPgP~~~PllGnl~~l-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~ 106 (308)
|++..+.||||+++|++||++++ ..+++..+.+|.++|||++++++|+.++|+++||+++++|+.+++..|++||....
T Consensus 6 ~~~~~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~il~~~~~~f~~~~~~~~ 85 (477)
T 1r9o_A 6 SSGRGKLPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRGIFPL 85 (477)
T ss_dssp ---CCBCCCCSSSCC-----CCBCHHHHHHHHHHHHHHHCSEEEEESSSCEEEEECSHHHHHHHHTTTTTTTCEECCCSC
T ss_pred ccCCCCCCCCCCCCceeccHhhcCCCChHHHHHHHHHHhCCEEEEEECCCcEEEECCHHHHHHHHhcccHhhCCCCcchh
Confidence 33444679999999999999988 45678899999999999999999999999999999999999888888998875433
Q ss_pred ccccccCCcceEeccCChhhhhhhhHHHhhcCChH--HHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHH
Q 040102 107 VDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQ--TLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNV 184 (308)
Q Consensus 107 ~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~--~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~v 184 (308)
...... +.++++ .+|+.|+++||++. +.|+.. .++.+.+.+.++++.+++.|.+. .+.++|+.+.+.++++|+
T Consensus 86 ~~~~~~-~~~l~~-~~g~~w~~~Rr~~~-~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~--~~~~vd~~~~~~~~~~~v 160 (477)
T 1r9o_A 86 AERANR-GFGIVF-SNGKKWKEIRRFSL-MTLRNFGMGKRSIEDRVQEEARCLVEELRKT--KASPCDPTFILGCAPCNV 160 (477)
T ss_dssp CCTTTC-TTSSTT-CCHHHHHHHHHHHH-HHHTTSSSCSSCHHHHHHHHHHHHHHHHHTT--TTSCBCTHHHHHHHHHHH
T ss_pred hhhccC-CCceEe-cCChHHHHHHHHHH-HHHHHhCCChHHHHHHHHHHHHHHHHHHHhc--CCCccChHHHHHHHHHHH
Confidence 333222 234444 47999999999986 678776 45678899999999999999763 356899999999999999
Q ss_pred HHHHHhcCcccCCchhHHHHHHHHHHHHHHhCC--CCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040102 185 VSRMTMGQICSINDKEADEVRKLVQETAELTGK--FNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARK 262 (308)
Q Consensus 185 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 262 (308)
|++++||.+++..+.+...+.+.+......... ..+.+++|++.++ +++..++..+..+.+.+++.++|++++++.+
T Consensus 161 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-lp~~~~~~~~~~~~~~~~~~~~i~~r~~~~~ 239 (477)
T 1r9o_A 161 ICSIIFHKRFDYKDQQFLNLMEKLNENIKILSSPWIQICNNFSPIIDY-FPGTHNKLLKNVAFMKSYILEKVKEHQESMD 239 (477)
T ss_dssp HHHHHHSCCCCTTCHHHHHHHHHHHHHHHHHTCCBC-------CCCSC-CTTCHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHccCcCCCCCHHHHHHHHHHHHHHHhhccchhHHHhhccHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999998853222223333334444332221 1234467763222 2233356677788889999999998875421
Q ss_pred hhhccCCCCCCCCHHHHHhhcccc--ccccCCCCHHHHHHHHHHHhcC
Q 040102 263 INKETGKDYAPMDLLDMLLDISED--ESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 263 ~~~~~~~~~~~~d~l~~ll~~~~~--~~~~~~lt~~~i~~~~~~l~~A 308 (308)
+ ..++|+++.|++...+ .+++..+|+++|++++.++++|
T Consensus 240 ------~-~~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~~~~~~A 280 (477)
T 1r9o_A 240 ------M-NNPQDFIDCFLMKMEKEKHNQPSEFTIESLENTAVDLFGA 280 (477)
T ss_dssp ------T-TCCCSHHHHHHHHHHHHTTSCSCSCCHHHHHHHHHHHHHH
T ss_pred ------C-CCchHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHhhc
Confidence 1 2457999999865321 1112369999999999999875
No 11
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A*
Probab=100.00 E-value=3.2e-33 Score=261.50 Aligned_cols=259 Identities=15% Similarity=0.205 Sum_probs=182.4
Q ss_pred CCCCCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhc-ccccccCCcccccccccc
Q 040102 34 LPPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTH-ETSFCDRPISAAVDYLTY 112 (308)
Q Consensus 34 ~pPgP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~-~~~f~~Rp~~~~~~~~~~ 112 (308)
.||||+++|++||++++.+.++..+.+|.++||+++++++|++++|+|+||+++++||.++ ...|++|+........
T Consensus 15 ~~PGP~~~PliGn~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~~f~~r~~~~~~~~~-- 92 (485)
T 3nxu_A 15 GIPGPTPLPFLGNILSYHKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPVGFM-- 92 (485)
T ss_dssp TCCCCCCBTTTBTGGGGGGCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTTTTTTTCCCCCCCSCCGGG--
T ss_pred CCCCCCCcCeecCcHHhhcChHHHHHHHHHHcCCeEEEEeCCCCEEEECCHHHHHHHHhccchhhccCCccccccccc--
Confidence 3899999999999999977788999999999999999999999999999999999999988 6788888754433321
Q ss_pred CCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHhcC
Q 040102 113 GSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMGQ 192 (308)
Q Consensus 113 ~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~ 192 (308)
+.+ ++..+|+.|+++||+++ +.|++++++.+.+.+.++++.+++.+.+....+.++|+.+.+.++++|+|+.++||.
T Consensus 93 -~~~-l~~~~g~~w~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~g~~~d~~~~~~~~~~dvi~~~~fG~ 169 (485)
T 3nxu_A 93 -KSA-ISIAEDEEWKRLRSLLS-PTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDVITSTSFGV 169 (485)
T ss_dssp -GGS-TTTCCHHHHHHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEHHHHHHHHHHHHHHHHHHSC
T ss_pred -ccC-ccccCCcHHHHHHhhcC-hhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCcHHHHHHHHHHHHHHHHHcCC
Confidence 123 34567999999999996 899999999999999999999999997654447799999999999999999999999
Q ss_pred cccCCchhHHHHHHHHHHHHHHhCCC---Ccccccccccc----ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 040102 193 ICSINDKEADEVRKLVQETAELTGKF---NLQDYIWFCKN----IDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINK 265 (308)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~P~l~~----~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 265 (308)
+++..+...+++.+............ .....+|++.. +...... .+..+.+++.+.++++++.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----- 241 (485)
T 3nxu_A 170 NIDSLNNPQDPFVENTKKLLRFDFLDPFFLSITVFPFLIPILEVLNICVFP---REVTNFLRKSVKRMKESRLED----- 241 (485)
T ss_dssp CCCGGGCTTCHHHHHHTTSCCCCTTSHHHHHHHHCTTHHHHHHHTTCCSSC---HHHHHHHHHHHHHHHHHHHHC-----
T ss_pred ccccccCCCcHHHHHHHHHhchhhHHHHHHHHHHhhhhHHHHHHhhhhhch---HHHHHHHHHHHHHHHHHHHhc-----
Confidence 98542222234444333221100000 01233443321 1111111 122334444455554444321
Q ss_pred ccCCCCCCCCHHHHHhhccccc--cccCCCCHHHHHHHHHHHhcC
Q 040102 266 ETGKDYAPMDLLDMLLDISEDE--SSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 266 ~~~~~~~~~d~l~~ll~~~~~~--~~~~~lt~~~i~~~~~~l~~A 308 (308)
. . ....|+++.|++...+. +.+..+|+++|++++.++++|
T Consensus 242 -~-~-~~~~d~l~~ll~~~~~~~~~~~~~l~~~ei~~~~~~l~~A 283 (485)
T 3nxu_A 242 -T-Q-KHRVDFLQLMIDSQNSKETESHKALSDLELVAQSIIFIFA 283 (485)
T ss_dssp -C-----CCCHHHHHHHHHC--------CCCHHHHHHHHHHHHHH
T ss_pred -c-C-CCcccHHHHHHHhhhccccccccCCCHHHHHHHHHHHHHH
Confidence 1 1 24679999999876432 112369999999999999875
No 12
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Probab=100.00 E-value=3.2e-32 Score=254.49 Aligned_cols=262 Identities=19% Similarity=0.336 Sum_probs=194.2
Q ss_pred CCCCCCCCCCCCCeeeecccC-CCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCcccccc
Q 040102 30 TTSSLPPSPMALPIIGHLHLL-APIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAVD 108 (308)
Q Consensus 30 ~~~~~pPgP~~~PllGnl~~l-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~~ 108 (308)
+..++||||+++|++||++++ ..+++..+.+|.++|||++++++|+.++|+++||+++++||.+++..|++|+......
T Consensus 7 ~~~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~~ 86 (476)
T 1po5_A 7 SKGKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVD 86 (476)
T ss_dssp --CCCCCCSCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCGGGGC
T ss_pred CCCCCCcCCCCCCccccHHhccCCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCCcHHHH
Confidence 334679999999999999998 5778999999999999999999999999999999999999988888899887544333
Q ss_pred ccccCCcceEeccCChhhhhhhhHHHhhcCChH--HHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHH
Q 040102 109 YLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQ--TLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVS 186 (308)
Q Consensus 109 ~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~--~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~ 186 (308)
.... +.++++ .+|+.|+++||++. +.|+.. .++.+.+.+.++++.+++.|.+. .++++|+.+.+.++++|+|+
T Consensus 87 ~~~~-~~~l~~-~~g~~w~~~Rr~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~--~~~~~d~~~~~~~~~~~vi~ 161 (476)
T 1po5_A 87 PIFQ-GYGVIF-ANGERWRALRRFSL-ATMRDFGMGKRSVEERIQEEARCLVEELRKS--KGALLDNTLLFHSITSNIIC 161 (476)
T ss_dssp SCCS-SCCCCC-SSHHHHHHHHHHHH-HHHHHSCCCHHHHHHHHHHHHHHHHHHHHHT--TTCCBCCHHHHHHHHHHHHH
T ss_pred hhcC-CCceEe-cCCcHHHHHHHHHH-HHHHHhCCChhHHHHHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHHHH
Confidence 3222 234544 47999999999985 678766 45778899999999999999763 35689999999999999999
Q ss_pred HHHhcCcccCCchhHHHHHHHHHHHHHHhCC---C--Cccccccc-cccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040102 187 RMTMGQICSINDKEADEVRKLVQETAELTGK---F--NLQDYIWF-CKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEA 260 (308)
Q Consensus 187 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~P~-l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~ 260 (308)
+++||.+++..+ .++.+..+.+...... . .+.+++|+ ++++ ++..++..+..+.+++++.++|++++++
T Consensus 162 ~~~fG~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~l--p~~~~~~~~~~~~~~~~~~~~i~~r~~~ 236 (476)
T 1po5_A 162 SIVFGKRFDYKD---PVFLRLLDLFFQSFSLISSFSSQVFELFSGFLKHF--PGTHRQIYRNLQEINTFIGQSVEKHRAT 236 (476)
T ss_dssp HHHHSSCCCTTC---HHHHHHHHHHHHHTTTCCTTHHHHHHHTHHHHHTS--SCSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCCCC---HHHHHHHHHHHHHHhhhcchhhHHHHhhhHHHHhc--CcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999885322 2333333333222211 1 12335676 3333 2334566777888999999999888654
Q ss_pred hhhhhccCCCCCCCCHHHHHhhcccc--ccccCCCCHHHHHHHHHHHhcC
Q 040102 261 RKINKETGKDYAPMDLLDMLLDISED--ESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 261 ~~~~~~~~~~~~~~d~l~~ll~~~~~--~~~~~~lt~~~i~~~~~~l~~A 308 (308)
.+ . ....|+++.|++..++ .+++..+|+++|++++.++++|
T Consensus 237 ~~------~-~~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~~~~~~A 279 (476)
T 1po5_A 237 LD------P-SNPRDFIDVYLLRMEKDKSDPSSEFHHQNLILTVLSLFFA 279 (476)
T ss_dssp CC------T-TSCCSHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHH
T ss_pred cC------C-CCcccHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHhh
Confidence 21 1 2357999999865421 1112358999999999999875
No 13
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3tik_A* 3g1q_A* 3p99_A* 2wv2_A* 2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Probab=99.98 E-value=2.9e-32 Score=252.45 Aligned_cols=260 Identities=14% Similarity=0.204 Sum_probs=202.9
Q ss_pred CCCCCCCCC-CCeeeecccCCCCchHHHHHHHHhcC-CeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCccccccc
Q 040102 32 SSLPPSPMA-LPIIGHLHLLAPIPHQALHKLSIRYG-PLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAVDY 109 (308)
Q Consensus 32 ~~~pPgP~~-~PllGnl~~l~~~~~~~~~~~~~~yG-~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~~~ 109 (308)
.++||||++ +|++||++++..+++..+.+|+++|| ++|++++|++++||++||+++++++.+++..|++|+.......
T Consensus 2 ~~~PPg~p~~~P~iG~~~~~~~~~~~~~~~~~~~yG~~i~~~~~~~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~~~~~ 81 (450)
T 3gw9_A 2 GKLPPVYPVTVPILGHIIQFGKSPLGFMQECKRQLKSGIFTINIVGKRVTIVGDPHEHSRFFLPRNEVLSPREVYSFMVP 81 (450)
T ss_dssp CSCCCBCCCCSTTTBTHHHHHHCHHHHHHHHHHHHTCSEEEEEETTEEEEEECCGGGTHHHHSSCTTTEESTGGGGGGHH
T ss_pred CCCCCCCCCCcchhccHHHHccCHHHHHHHHHHHhCCCeEEEEECCEeEEEEeCHHHHHHHHhCChhhccchhhHHHHHH
Confidence 367999765 99999999887778999999999999 9999999999999999999999999999899998876544433
Q ss_pred cccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHH-HHHHhccCCCceehHHHHHHHHHHHHHHH
Q 040102 110 LTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQ-LMLKKAKASEAVDVGKELIRLTNNVVSRM 188 (308)
Q Consensus 110 ~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~-~l~~~~~~~~~vd~~~~~~~~t~~vi~~~ 188 (308)
.. + .++++..+|+.|+.+||++. +.|+.++++.+.+.+.++++++++ .|.+ .+.++|+.+.+.++++++|+++
T Consensus 82 ~~-g-~~~~~~~~~~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~ll~~~~~~---~~~~vd~~~~~~~~~~~~i~~~ 155 (450)
T 3gw9_A 82 VF-G-EGVAYAAPYPRMREQLNFLA-EELTIAKFQNFVPAIQHEVRKFMAANWDK---DEGEINLLEDCSTMIINTACQC 155 (450)
T ss_dssp HH-C-TTSGGGSCHHHHHHHHHHHH-HTTSGGGCTTHHHHHHHHHHHHHHHHSCS---SEEEEEHHHHHHHHHHHHHHHH
T ss_pred Hh-c-CCcccCCCcHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHhcc---CCCcccHHHHHHHHHHHHHHHH
Confidence 32 2 34555567999999999986 899999999999999999999998 5432 2457999999999999999999
Q ss_pred HhcCcccCCchhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 040102 189 TMGQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETG 268 (308)
Q Consensus 189 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~ 268 (308)
+||.+++.. .+..++.+.+..+... ...+..++|++.++ +.+..++..++.+.+.+++.++|+++++... ..
T Consensus 156 ~fG~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~P~l~~l-p~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~---~~- 227 (450)
T 3gw9_A 156 LFGEDLRKR-LDARRFAQLLAKMESS--LIPAAVFLPILLKL-PLPQSARCHEARTELQKILSEIIIARKEEEV---NK- 227 (450)
T ss_dssp HSCHHHHHH-SCHHHHHHHHHHHHHT--CCGGGGTCGGGGGS-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HT-
T ss_pred HcCcchhhh-hhhHHHHHHHHHHHhc--cccchhcccchhcc-CCchhHHHHHHHHHHHHHHHHHHHHHHHhhc---cc-
Confidence 999987421 1134455555444222 22245677888765 2344566778888999999999998875432 11
Q ss_pred CCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 269 KDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 269 ~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
+ ....|+++.|++...++ +..+++++|.+++.++++|
T Consensus 228 ~-~~~~d~l~~ll~~~~~~--~~~l~~~~i~~~~~~~~~A 264 (450)
T 3gw9_A 228 D-SSTSDLLSGLLSAVYRD--GTPMSLHEVCGMIVAAMFA 264 (450)
T ss_dssp S-CCCCSHHHHHHHCBCTT--SCBCCHHHHHHHHHHHHHH
T ss_pred C-CccchHHHHHHHhhccC--CCCCCHHHHHHHHHHHHHH
Confidence 1 25679999999886443 2369999999999998875
No 14
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*
Probab=99.97 E-value=4.7e-31 Score=246.39 Aligned_cols=261 Identities=13% Similarity=0.148 Sum_probs=193.6
Q ss_pred ccCCCCCCCCCCCCCeeeecccCC-----CCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCC
Q 040102 28 SKTTSSLPPSPMALPIIGHLHLLA-----PIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 28 ~~~~~~~pPgP~~~PllGnl~~l~-----~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
..+..+.+|||+++|++||++++. .+++..+.+|.++||+|+++++|+.++|+++||+++++|+.++ ..|++||
T Consensus 19 ~~~pl~~~PGP~~~p~iG~~~~~~~~~~~~~~~~~~~~l~~~YG~i~~~~~g~~~~vvv~dp~~~~~il~~~-~~~~~r~ 97 (482)
T 3k9v_A 19 ETRNVTDLPGPTNWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEALYRTE-SAHPQRL 97 (482)
T ss_dssp CCEEGGGCCCSCCCTTTBTHHHHHHTTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTC-CSSCCCC
T ss_pred ccCCCCCCCCCCCCCccccHHHHhccCCcccHHHHHHHHHHHcCCEEEEccCCCCEEEEcCHHHHHHHHHhc-CCCCCCC
Confidence 344556689999999999998871 3578899999999999999999999999999999999999874 6788887
Q ss_pred cccc---ccccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhcc-CCCceehHHHHH
Q 040102 103 ISAA---VDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAK-ASEAVDVGKELI 178 (308)
Q Consensus 103 ~~~~---~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~-~~~~vd~~~~~~ 178 (308)
.... .......+.++ +..+|+.|+++||++...+++.+.++.+.+.+.++++.+++.+.+..+ .+.++|+.+.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~l-~~~~g~~w~~~Rr~~~~~f~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~g~~vd~~~~~~ 176 (482)
T 3k9v_A 98 EIKPWKAYRDHRNEAYGL-MILEGQEWQRVRSAFQKKLMKPVEIMKLDKKINEVLADFLERMDELCDERGRIPDLYSELN 176 (482)
T ss_dssp CCHHHHHHHHHHTCCCCT-TTCCHHHHHHHHHHHHHHHTCHHHHGGGHHHHHHHHHHHHHHHHHHCCTTSCCTTHHHHHH
T ss_pred CchHHHHHHHhcCCCCCc-eeCCCchHHHHHHHhhHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 5321 11121122344 456799999999999743458889999999999999999999987543 356899999999
Q ss_pred HHHHHHHHHHHhcCcccCCc----hhHHHHHHHHHHHHHHhCCCCcccccc--ccccccccchHHHHHHHHHHHHHHHHH
Q 040102 179 RLTNNVVSRMTMGQICSIND----KEADEVRKLVQETAELTGKFNLQDYIW--FCKNIDLQGFGKRLKEVRRKFDDMMER 252 (308)
Q Consensus 179 ~~t~~vi~~~~fG~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~P--~l~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (308)
++++|+|+.++||.+++..+ ....++.+.+...+..... ..++| ++.++ .....++..+..+.+.+++.+
T Consensus 177 ~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~~~~~l-~~~~~~~~~~~~~~~~~~~~~ 252 (482)
T 3k9v_A 177 KWSFESICLVLYEKRFGLLQKETEEEALTFITAIKTMMSTFGK---MMVTPVELHKRL-NTKVWQAHTLAWDTIFKSVKP 252 (482)
T ss_dssp HHHHHHHHHHHHSCCCCSSSTTSTTSSHHHHHHHHHHHTTGGG---GSSSCHHHHHHH-TCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccccCCCCCCcchHHHHHHHHHHHHHHHHHH---HHhhhHHHHHhc-CCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999984322 1235566666655433321 22334 22333 222234556667778888888
Q ss_pred HHHHHHHHhhhhhccCCCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 253 ILKEHQEARKINKETGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 253 ii~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
+|++++++.. . ....|+++.+++.. .+|+++|.+++.++++|
T Consensus 253 ~i~~r~~~~~----~---~~~~d~l~~ll~~~-------~l~~~ei~~~~~~~~~A 294 (482)
T 3k9v_A 253 CIDNRLQRYS----Q---QPGADFLCDIYQQD-------HLSKKELYAAVTELQLA 294 (482)
T ss_dssp HHHHHHHHTT----T---CTTSCHHHHHHHHT-------CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc----c---CCchHHHHHHHhcc-------CCCHHHHHHHHHHHHHh
Confidence 9998876532 1 24578998888641 48999999999999875
No 15
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=99.97 E-value=3.8e-31 Score=246.30 Aligned_cols=253 Identities=15% Similarity=0.196 Sum_probs=189.7
Q ss_pred CCCCCCCCC-CCeeeecccCCCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCcccccccc
Q 040102 32 SSLPPSPMA-LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAVDYL 110 (308)
Q Consensus 32 ~~~pPgP~~-~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~~~~ 110 (308)
.+.||||++ +|+|||++++.++++.++.+|+++|||||++++|++++|+|+||+++++++.+++..|++++........
T Consensus 10 ~~~PP~~~~~lP~iG~~~~~~~~~~~~~~~~~~kYG~i~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~~~~ 89 (461)
T 3ld6_A 10 VKSPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTP 89 (461)
T ss_dssp CCCCCBCCCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHHHHHH
T ss_pred CCCCCCCCCCcCeeeeHHHhhhCHHHHHHHHHHHhCCEEEEEECCccEEEEeCHHHHHHHHhCCccccCCCcchhhhhhc
Confidence 355778775 9999999998778999999999999999999999999999999999999999999999888754332222
Q ss_pred ccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHh
Q 040102 111 TYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTM 190 (308)
Q Consensus 111 ~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~f 190 (308)
..+ .++++..+|+.|+.+|+++. +.|+.+.++.+.+.+.+++.++++.|.+ +.++|+.+.+.++++++++.++|
T Consensus 90 ~~g-~~~~~~~~~~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~f 163 (461)
T 3ld6_A 90 VFG-KGVAYDVPNPVFLEQKKMLK-SGLNIAHFKQHVSIIEKETKEYFESWGE----SGEKNVFEALSELIILTASHCLH 163 (461)
T ss_dssp HHC-TTSGGGSCHHHHHHHHHHHH-HHSSHHHHHHHHHHHHHHHHHHGGGGCS----EEEEEHHHHHHHHHHHHHHHHHT
T ss_pred cCC-CccccCCCcHHHHHHHHhcc-ccccHHHHhhhhHHHHHHHHHHHHHHhh----cCCccHHHHHHHHHHHHHHHHHc
Confidence 222 35566678999999999996 8999999999999999999988887754 35789999999999999999999
Q ss_pred cCcccCCchhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC
Q 040102 191 GQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKD 270 (308)
Q Consensus 191 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~ 270 (308)
|.+++... .+.+.+....+.... ......+|. ++ +.+...+..++.+.+.+++.+.|+++++. +
T Consensus 164 G~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~--~~-~~~~~~~~~~~~~~l~~~~~~~i~~r~~~--------~- 227 (461)
T 3ld6_A 164 GKEIRSQL--NEKVAQLYADLDGGF--SHAAWLLPG--WL-PLPSFRRRDRAHREIKDIFYKAIQKRRQS--------Q- 227 (461)
T ss_dssp CHHHHHTC--CHHHHHHHHHHHTTS--SHHHHHSCT--TS-CCHHHHHHHHHHHHHHHHHHHHHHHHTTC--------C-
T ss_pred Ccchhhhh--hhhhhhhhhhhhhhh--hhHHHhhhh--hc-cCcHHHHHHHHHHHHHHHHHHHHHHHHhc--------C-
Confidence 98874311 123333222221111 111112232 22 22334556677788888888888776432 1
Q ss_pred CCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 271 YAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 271 ~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
+...|+++.|+++..++ +..+|+++|.+++.++++|
T Consensus 228 ~~~~d~l~~ll~~~~~~--~~~ls~~ei~~~~~~~~~a 263 (461)
T 3ld6_A 228 EKIDDILQTLLDATYKD--GRPLTDDEVAGMLIGLLLA 263 (461)
T ss_dssp CCCCSHHHHHHTCBCTT--SCBCCHHHHHHHHHHHHHH
T ss_pred CCCcchhhhhHHhhhcc--cCCCCHHHHHHHHHhhhhc
Confidence 25679999999887544 3479999999999999875
No 16
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ...
Probab=99.97 E-value=3.2e-29 Score=234.03 Aligned_cols=258 Identities=16% Similarity=0.209 Sum_probs=185.9
Q ss_pred CCCCCCCCCCeeeecccCC-CCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCccccccccc
Q 040102 33 SLPPSPMALPIIGHLHLLA-PIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAVDYLT 111 (308)
Q Consensus 33 ~~pPgP~~~PllGnl~~l~-~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~~~~~ 111 (308)
+.||||+++|++||++++. ..++..+.+|.++|||++++++|+.++|+++||+++++|+.+ ..| .++.......+.
T Consensus 3 ~~~PGP~~~p~iG~l~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~~~~~~~il~~--~~f-~~~~~~~~~~~~ 79 (470)
T 2ij2_A 3 KEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDE--SRF-DKNLSQALKFVR 79 (470)
T ss_dssp CCCCCCCCCGGGTTGGGGCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHTCT--TTE-EECCCHHHHHHH
T ss_pred CCCCCCCCCCccccHHHHhcccchHHHHHHHHHhCCeEEEecCCccEEEECCHHHHHHHHhh--cCc-CcCchhHHHHHH
Confidence 4589999999999999884 567889999999999999999999999999999999999964 245 332211111111
Q ss_pred -cCCcceEec-cCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHH
Q 040102 112 -YGSADFSFA-PYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMT 189 (308)
Q Consensus 112 -~~~~~~~~~-~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~ 189 (308)
..+.+++++ .+|+.|+++||++. +.|++++++.+.+.+.++++++++.|.+. .++.++|+.+.+.++++|+|+.++
T Consensus 80 ~~~~~~l~~~~~~g~~w~~~Rr~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-~~~~~vd~~~~~~~~~~~vi~~~~ 157 (470)
T 2ij2_A 80 DFAGDGLFTSWTHEKNWKKAHNILL-PSFSQQAMKGYHAMMVDIAVQLVQKWERL-NADEHIEVPEDMTRLTLDTIGLCG 157 (470)
T ss_dssp HHHTTSGGGSCTTSHHHHHHHHHHG-GGGSTTTHHHHHHHHHHHHHHHHHHHHTC-CTTCCEEHHHHHHHHHHHHHHHHH
T ss_pred HhcCCceEEcCCCchHHHHHHHHhc-cccCHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCeEEHHHHHHHHHHHHHHHHH
Confidence 112344443 47999999999996 89999999999999999999999998753 235689999999999999999999
Q ss_pred hcCcccCCc-hhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 040102 190 MGQICSIND-KEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETG 268 (308)
Q Consensus 190 fG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~ 268 (308)
||.+++..+ ++..++.+.+...+....... ...|++.++ +.+..+++.+..+.+++++.++|+++++. .
T Consensus 158 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~r~~~------~- 227 (470)
T 2ij2_A 158 FNYRFNSFYRDQPHPFITSMVRALDEAMNKL--QRANPDDPA-YDENKRQFQEDIKVMNDLVDKIIADRKAS------G- 227 (470)
T ss_dssp HSCCCCGGGCSSCCHHHHHHHHHHHHHHHTC-----CTTSGG-GHHHHHHHHHHHHHHHHHHHHHHHHHHHH------C-
T ss_pred cCCcccccccCCCCHHHHHHHHHHHHHHHHH--hhhhhHhhc-cchHHHHHHHHHHHHHHHHHHHHHHHHhc------c-
Confidence 999875321 112344444444332221110 011333333 22234556677788888999999887643 1
Q ss_pred CCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 269 KDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 269 ~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
....|+++.|++..++++ +..+|+++|.+++.++++|
T Consensus 228 --~~~~dll~~ll~~~~~~~-~~~ls~~ei~~~~~~~~~A 264 (470)
T 2ij2_A 228 --EQSDDLLTHMLNGKDPET-GEPLDDENIRYQIITFLIA 264 (470)
T ss_dssp --CCCSSHHHHHHHCCCTTT-CCCCCHHHHHHHHHHHHHH
T ss_pred --cCchhHHHHHHhccCccc-CCCCCHHHHHHHHHHHHHH
Confidence 245799999998764322 2369999999999999875
No 17
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=99.96 E-value=1.4e-28 Score=230.05 Aligned_cols=265 Identities=14% Similarity=0.126 Sum_probs=187.8
Q ss_pred ccCCCCCCCCCCCCCeeeecccC-C----CCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCC
Q 040102 28 SKTTSSLPPSPMALPIIGHLHLL-A----PIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 28 ~~~~~~~pPgP~~~PllGnl~~l-~----~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
..+..+.+|||++.|+. |++++ . ..++..+.+|.++||||+++++|+.++|+++||+++++|+.++ ..|++||
T Consensus 4 ~~~pL~~~PGP~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~kYG~i~~~~~g~~~~vvv~dp~~~~~il~~~-~~f~~r~ 81 (487)
T 3n9y_A 4 SPRPFNEIPSPGDNGWL-NLYHFWRETGTHKVHLHHVQNFQKYGPIYREKLGNVESVYVIDPEDVALLFKSE-GPNPERF 81 (487)
T ss_dssp CCBCGGGSCCSCSCHHH-HHHHHHHHTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHHTC-CSSCCCC
T ss_pred CCCCHhhCCCCCCCChh-hHHHHHhcCCCcchhHHHHHHHHHcCceeeccCCCCCEEEEcCHHHHHHHHHhC-CCCCCCC
Confidence 34445668999998876 77665 1 3577899999999999999999999999999999999999876 4798887
Q ss_pred ccccc---cccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhc----cCCCceehHH
Q 040102 103 ISAAV---DYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKA----KASEAVDVGK 175 (308)
Q Consensus 103 ~~~~~---~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~----~~~~~vd~~~ 175 (308)
..... ......+ .++++.+|+.|+++||+++..+|+.++++.+.+.++++++++++.|.+.. .++.++|+.+
T Consensus 82 ~~~~~~~~~~~~~~~-~~l~~~~g~~w~~~Rr~l~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~ 160 (487)
T 3n9y_A 82 LIPPWVAYHQYYQRP-IGVLLKKSAAWKKDRVALNQEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNYSGDISD 160 (487)
T ss_dssp CCHHHHHHHHHTTCC-CCGGGCCHHHHHHHHHHHHHHHTSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSSSEEECCHH
T ss_pred CCcHHHHHHHHcccc-CCCccCCcHHHHHHHHhcCcccCCchHHHHhhhHHHHHHHHHHHHHHHHhcccccCCCCccHHH
Confidence 54321 1111122 23456789999999999973369999999999999999999999997632 2245799999
Q ss_pred HHHHHHHHHHHHHHhcCcccCCch----hHHHHHHHHHHHHHHhCCCCccccccc-c-ccccccchHHHHHHHHHHHHHH
Q 040102 176 ELIRLTNNVVSRMTMGQICSINDK----EADEVRKLVQETAELTGKFNLQDYIWF-C-KNIDLQGFGKRLKEVRRKFDDM 249 (308)
Q Consensus 176 ~~~~~t~~vi~~~~fG~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~P~-l-~~~~~~~~~~~~~~~~~~~~~~ 249 (308)
.+.++++|+|+.++||.+++..+. ....+.+.+...+..... ..++|. + .++ +.+..++..+..+.+.++
T Consensus 161 ~~~~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~l~~~~-~~~~~~~~~~~~~~~~~~ 236 (487)
T 3n9y_A 161 DLFRFAFESITNVIFGERQGMLEEVVNPEAQRFIDAIYQMFHTSVP---MLNLPPDLFRLF-RTKTWKDHVAAWDVIFSK 236 (487)
T ss_dssp HHHHHHHHHHHHHHHSSCCCTTSSSCCHHHHHHHHHHHHHHHHHGG---GTTSCHHHHHHH-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccCCCCChHHHHHHHHHHHHHHHHHH---HHhcCHHHHhhc-ccHHHHHHHHHHHHHHHH
Confidence 999999999999999999853221 123455555554443321 233442 2 223 222233444555666777
Q ss_pred HHHHHHHHHHHhhhhhccCCCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 250 MERILKEHQEARKINKETGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 250 ~~~ii~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
+.+++++++++.+ +.........|+++.|++.. .+|+++|.+++.++++|
T Consensus 237 ~~~~i~~~~~~~~--~~~~~~~~~~d~l~~ll~~~-------~l~~~ei~~~~~~~~~A 286 (487)
T 3n9y_A 237 ADIYTQNFYWELR--QKGSVHHDYRGILYRLLGDS-------KMSFEDIKANVTEMLAG 286 (487)
T ss_dssp HHHHHHHHHHHHH--HHCCCCSSCCCHHHHHHHSC-------SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hcCCcccchHHHHHHHHhcC-------CCCHHHHHHHHHHHHHH
Confidence 7777777665532 11111124579999999641 48999999999999875
No 18
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein, alternative splicing, cholesterol biosynthesis, endoplasmic reticulum, heme, iron; HET: HEM KLN BCD; 2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Probab=99.96 E-value=8.8e-30 Score=236.90 Aligned_cols=254 Identities=15% Similarity=0.175 Sum_probs=186.9
Q ss_pred CCCCCCCC-CCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCccc-cc
Q 040102 30 TTSSLPPS-PMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISA-AV 107 (308)
Q Consensus 30 ~~~~~pPg-P~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~-~~ 107 (308)
+..++||| |+++|++||++++..+++.++.+|+++||+||++++|++++|||+||++++++|.+++..|+.++... ..
T Consensus 8 ~~~~~PPg~P~~lP~iG~l~~~~~~~~~~~~~~~~~yG~v~~l~l~g~~~vvv~~~~~~~~il~~~~~~~~~~~~~~~~~ 87 (461)
T 3i3k_A 8 AGVKSPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLT 87 (461)
T ss_dssp --CCCCCBCCCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHHHH
T ss_pred CCCCCCCCCCCCCCccccHHhhccCHHHHHHHHHHHhCCEEEEEecCceEEEEeChHHHHHHHhccccccccchHHHHhh
Confidence 45678999 88999999999887778999999999999999999999999999999999999998887776554221 11
Q ss_pred cccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHH
Q 040102 108 DYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSR 187 (308)
Q Consensus 108 ~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~ 187 (308)
..+. +.++++..+|+.|+.+||++. +.|+.++++.+.+.+.+++.++++.|.+ +.++|+.+.+..+++++++.
T Consensus 88 ~~~~--g~g~~~~~~g~~w~~~Rr~~~-~~f~~~~l~~~~~~~~~~~~~ll~~l~~----~~~~dl~~~~~~~~~~~~~~ 160 (461)
T 3i3k_A 88 TPVF--GKGVAYDVPNPVFLEQKKMLK-SGLNIAHFKQHVSIIEKETKEYFESWGE----SGEKNVFEALSELIILTASH 160 (461)
T ss_dssp HHHH--CTTSGGGSCHHHHHHHHHHHH-HHSSHHHHHHHHHHHHHHHHHHGGGGCS----EEEEEHHHHHHHHHHHHHHH
T ss_pred hhhc--CCeeeeCCCcHHHHHHHHHHh-hhhCHHHHHHHHHHHHHHHHHHHHHhhh----cCCcCHHHHHHHHHHHHHHH
Confidence 1122 234555557999999999996 7899999999999999999999988754 34689999999999999999
Q ss_pred HHhcCcccCCchhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 040102 188 MTMGQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKET 267 (308)
Q Consensus 188 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~ 267 (308)
++||.++.... ...+.+.+...... ......++| .|+ +.+..++..+..+.+.+++.++|+++++.
T Consensus 161 ~~~G~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~P--~~l-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------- 226 (461)
T 3i3k_A 161 CLHGKEIRSQL--NEKVAQLYADLDGG--FSHAAWLLP--GWL-PLPSFRRRDRAHREIKDIFYKAIQKRRQS------- 226 (461)
T ss_dssp HHTCHHHHHTC--CHHHHHHHHHHHTT--SSHHHHHSC--TTS-CCHHHHHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHccHhhhhHH--HHHHHHHHHHHHhc--cccchhhcc--ccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 99998763211 12333333322111 111112233 222 22234556677788888888888776532
Q ss_pred CCCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 268 GKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 268 ~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
+ +...|+++.|++...++ +..+|+++|.+++.++++|
T Consensus 227 -~-~~~~d~l~~ll~~~~~~--~~~l~~~~i~~~~~~l~~a 263 (461)
T 3i3k_A 227 -Q-EKIDDILQTLLDATYKD--GRPLTDDEVAGMLIGLLLA 263 (461)
T ss_dssp -C-CCCCSHHHHHHTCBCTT--SCBCCHHHHHHHHHHHHHH
T ss_pred -c-cccccHHHHHHHhhhcc--CCCCCHHHHHHHHHHHHhh
Confidence 1 24679999999886543 2369999999999998875
No 19
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase, metal-binding, heme, iron; HET: HEM REA; 2.10A {Synechocystis SP} PDB: 2ve4_A*
Probab=99.96 E-value=1.1e-28 Score=228.83 Aligned_cols=246 Identities=17% Similarity=0.185 Sum_probs=181.6
Q ss_pred CCCCCCCCCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCccccccc
Q 040102 30 TTSSLPPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAVDY 109 (308)
Q Consensus 30 ~~~~~pPgP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~~~ 109 (308)
+..+.||||+++|++||++++..+++ .+.++.++||+++++++++.+.++++||+++++|+.+++..|++++.. ....
T Consensus 9 ~~~~~pPgp~~~P~iG~~~~~~~~~~-~~~~~~~~yg~v~~~~~~g~~~vvv~~~~~~~~il~~~~~~~~~~~~~-~~~~ 86 (444)
T 2ve3_A 9 NSLPIPPGDFGLPWLGETLNFLNDGD-FGKKRQQQFGPIFKTRLFGKNVIFISGALANRFLFTKEQETFQATWPL-STRI 86 (444)
T ss_dssp CCCCCCCCCCCBTTTBTHHHHHHCTT-HHHHHHHHHCSSEEEEETTEEEEEECSHHHHHHHTSSCTTTEEEECCH-HHHH
T ss_pred CCCCCCCCCCCCCccccHHHHhcCcH-HHHHHHHHcCCeEEEeeCCCCEEEEcCHHHHHHHHhCCCcccccchhH-HHHH
Confidence 44567999999999999988744466 888999999999999988899999999999999998877777644321 1122
Q ss_pred cccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHH
Q 040102 110 LTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMT 189 (308)
Q Consensus 110 ~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~ 189 (308)
+. +..+++ ..+|+.|+.+||++. +.|++++++.+.+.+.++++.+++.|.+ ++++|+.+.+.++++++|++++
T Consensus 87 ~~-g~~~l~-~~~g~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~----~~~vd~~~~~~~~~~~vi~~~~ 159 (444)
T 2ve3_A 87 LL-GPNALA-TQMGEIHRSRRKILY-QAFLPRTLDSYLPKMDGIVQGYLEQWGK----ANEVIWYPQLRRMTFDVAATLF 159 (444)
T ss_dssp HH-CTTSGG-GCCHHHHHHHHHHHH-GGGCHHHHHTTHHHHHHHHHHHHHHHHH----SSEEEHHHHHHHHHHHHHHHHH
T ss_pred Hh-Cccccc-cCCchHHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHHHHHhcC----CCcEeHHHHHHHHHHHHHHHHH
Confidence 22 222443 457999999999996 8999999999999999999999999864 4689999999999999999999
Q ss_pred hcCcccCCchhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 040102 190 MGQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGK 269 (308)
Q Consensus 190 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~ 269 (308)
|| +.... + .++.+.+......... +...+|. ...++..++.+.+.+++.++|++++++ +
T Consensus 160 fG-~~~~~--~-~~~~~~~~~~~~~~~~--~~~~~p~-------~~~~~~~~~~~~~~~~~~~~i~~r~~~--------~ 218 (444)
T 2ve3_A 160 MG-EKVSQ--N-PQLFPWFETYIQGLFS--LPIPLPN-------TLFGKSQRARALLLAELEKIIKARQQQ--------P 218 (444)
T ss_dssp TC-HHHHS--C-TTHHHHHHHHHHHHSS--CCCCSTT-------SHHHHHHHHHHHHHHHHHHHHHHHHTS--------C
T ss_pred cC-CCccc--H-HHHHHHHHHHHHHHhc--CCccCCC-------cHHHHHHHHHHHHHHHHHHHHHHHhcC--------C
Confidence 99 44221 1 2333333333222211 1111221 112455667778888888888877532 1
Q ss_pred CCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 270 DYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 270 ~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
....|+++.|++..+++ +..+|+++|.+++.++++|
T Consensus 219 -~~~~d~l~~ll~~~~~~--~~~l~~~~i~~~~~~~~~A 254 (444)
T 2ve3_A 219 -PSEEDALGILLAARDDN--NQPLSLPELKDQILLLLFA 254 (444)
T ss_dssp -CCCSSHHHHHHHCBCTT--SCBCCHHHHHHHHHHHHHH
T ss_pred -CCccCHHHHHHhccccC--CCCCCHHHHHHHHHHHHHH
Confidence 24679999999876432 2369999999999999875
No 20
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding, monooxygenase, NADP, oxidoreductase, protein-inhibitor complex; HET: HEM CM6; 1.50A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A* 2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A* 1e9x_A* 1u13_A*
Probab=99.96 E-value=2.1e-28 Score=227.52 Aligned_cols=251 Identities=13% Similarity=0.122 Sum_probs=171.5
Q ss_pred CCCCC-CCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCccccccccc
Q 040102 33 SLPPS-PMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAVDYLT 111 (308)
Q Consensus 33 ~~pPg-P~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~~~~~ 111 (308)
++||| |+++|++||++++..+++..+.+|.++|||++++++|+.+++|++||+++++++.+++..|++++.........
T Consensus 4 ~~PPg~p~~~P~iG~~~~~~~~~~~~~~~l~~~yG~v~~~~~~~~~~~vv~~~~~~~~il~~~~~~~~~~~~~~~~~~~~ 83 (455)
T 2cib_A 4 VALPRVSGGHDEHGHLEEFRTDPIGLMQRVRDELGDVGTFQLAGKQVVLLSGSHANEFFFRAGDDDLDQAKAYPFMTPIF 83 (455)
T ss_dssp -CCCBCSCCCBTTBTHHHHTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEECTTSCGGGHHHH
T ss_pred CCCCCCCCCCCCccCHHHHhhChHHHHHHHHHHcCCEEEEEeCCceEEEECCHHHHHHHHhcCccccCcccchhHHHhhc
Confidence 67998 88999999999887778999999999999999999999999999999999999988777888886543222222
Q ss_pred cCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHhc
Q 040102 112 YGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMG 191 (308)
Q Consensus 112 ~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG 191 (308)
+ .++ +. +|+.|+.+||++. +.|++++++.+.+.+.++++.+++.|.+ +.++|+.+.+.++++++|+.++||
T Consensus 84 -g-~~~-~~-~~~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~~~~----~~~vd~~~~~~~~~~~vi~~~~fG 154 (455)
T 2cib_A 84 -G-EGV-VF-DASPERRKEMLHN-AALRGEQMKGHAATIEDQVRRMIADWGE----AGEIDLLDFFAELTIYTSSACLIG 154 (455)
T ss_dssp -C------------------------CCHHHHHHHHHHHHHHHHHHHTTCCS----EEEEEHHHHHHHHHHHHHHHHHTC
T ss_pred -C-Ccc-cc-CcHHHHHHHhhhc-cccCHHHHHHHHHHHHHHHHHHHHHhCC----CCcEeHHHHHHHHHHHHHHHHHcC
Confidence 2 233 33 6999999999995 8999999999999999999999987643 357999999999999999999999
Q ss_pred CcccCCchhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCC
Q 040102 192 QICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDY 271 (308)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ 271 (308)
.+++... ..++.+.+..+.... ..+..++|++. .+..++..++.+.+.+++.++|+++++... . . .
T Consensus 155 ~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~p~l~----~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~----~-~-~ 220 (455)
T 2cib_A 155 KKFRDQL--DGRFAKLYHELERGT--DPLAYVDPYLP----IESFRRRDEARNGLVALVADIMNGRIANPP----T-D-K 220 (455)
T ss_dssp HHHHTTC--CHHHHHHHHHHHTTC--CGGGGTCTTCS----CHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------
T ss_pred CCcchhh--hHHHHHHHHHHHhhh--hHHHHhcccCC----ChhHHHHHHHHHHHHHHHHHHHHHHHhccc----C-C-C
Confidence 9874311 134555544432111 11223445421 122345566778888899999988865321 1 1 1
Q ss_pred CCCCHHHHHhhccccccccCC-CCHHHHHHHHHHHhcC
Q 040102 272 APMDLLDMLLDISEDESSEIK-LTRENIKAFILDIFAA 308 (308)
Q Consensus 272 ~~~d~l~~ll~~~~~~~~~~~-lt~~~i~~~~~~l~~A 308 (308)
..+|+++.|++..+++ +.. +|+++|.+++.++++|
T Consensus 221 ~~~dll~~ll~~~~~~--~~~~l~~~~i~~~~~~l~~A 256 (455)
T 2cib_A 221 SDRDMLDVLIAVKAET--GTPRFSADEITGMFISMMFA 256 (455)
T ss_dssp -CCCHHHHHHHCBCTT--SSBSCCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHhhhhc--CCCCCCHHHHHHHHHHHHHh
Confidence 2349999999876432 224 9999999999999875
No 21
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1, molecular mechanism, heme, iron, metal-binding, monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor A3} PDB: 3el3_A*
Probab=99.95 E-value=1.3e-28 Score=229.56 Aligned_cols=250 Identities=16% Similarity=0.209 Sum_probs=160.6
Q ss_pred CCCCCCCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCc-ccccccc
Q 040102 32 SSLPPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPI-SAAVDYL 110 (308)
Q Consensus 32 ~~~pPgP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~-~~~~~~~ 110 (308)
...||||+++|++||++++..+++..+.++.+ ||||+++++|+.++++++||+++++|+.++ .|+.++. .......
T Consensus 22 ~eppPgP~~~P~iG~~~~~~~~p~~~~~~l~~-yGpv~~~~~g~~~~~vv~~~~~i~~il~~~--~~~~~~~~~~~~~~~ 98 (467)
T 3dbg_A 22 REPPVAGGGVPLLGHGWRLARDPLAFMSQLRD-HGDVVRIKLGPKTVYAVTNPELTGALALNP--DYHIAGPLWESLEGL 98 (467)
T ss_dssp CBCCEECCCCSTTHHHHHHHHCHHHHHHHHGG-GCSEEEEEETTEEEEEECSHHHHHHHHHCT--TC-------------
T ss_pred CCCCCCCCCCCcccchHHhccCHHHHHHHHHH-hCCEEEEEeCCccEEEECCHHHHHHHHhCc--CcccccchHHHHHHh
Confidence 45688999999999999887778889999988 999999999999999999999999999876 6644432 2222222
Q ss_pred ccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHh
Q 040102 111 TYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTM 190 (308)
Q Consensus 111 ~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~f 190 (308)
. +..++ +..+|+.|+++||++. +.|+.++++.+.+.+.++++.+++.|.+ +.++|+.+.+.++++++|+.++|
T Consensus 99 ~-g~~~l-~~~dg~~h~~~R~~l~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~----~~~~d~~~~~~~~~~~vi~~~~~ 171 (467)
T 3dbg_A 99 L-GKEGV-ATANGPLHRRQRRTIQ-PAFRLDAIPAYGPIMEEEAHALTERWQP----GKTVDATSESFRVAVRVAARCLL 171 (467)
T ss_dssp -------------------CGGGH-HHHSTTTSTTTHHHHHHHHHHHHHHSCT----TSCEEHHHHHHHHHHHHHHHHHS
T ss_pred c-CCCCc-ccCCcHHHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHhcc----CCcCcHHHHHHHHHHHHHHHHHh
Confidence 2 11344 4567999999999996 8999999999999999999999988753 56899999999999999999999
Q ss_pred cCcccCCchhHHHHHHHHHHHHHHhCCCCccccccc--cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 040102 191 GQICSINDKEADEVRKLVQETAELTGKFNLQDYIWF--CKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETG 268 (308)
Q Consensus 191 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~--l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~ 268 (308)
|.+++. .....+.+.+..+..... ...++|+ +.++ +.+..++..+..+.+.+++.++|++++++
T Consensus 172 g~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~r~~~-------- 237 (467)
T 3dbg_A 172 RGQYMD--ERAERLCVALATVFRGMY---RRMVVPLGPLYRL-PLPANRRFNDALADLHLLVDEIIAERRAS-------- 237 (467)
T ss_dssp CSSCCH--HHHHHHHHHHHHHHHC----------------------------CCHHHHHHHHHHHHHHHTTC--------
T ss_pred CCcccc--hhHHHHHHHHHHHHHHHH---HHhccchhhhhhC-CChHhHHHHHHHHHHHHHHHHHHHHHHhc--------
Confidence 998842 123445555554433221 1234453 2332 22334556667778888888888776532
Q ss_pred CCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 269 KDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 269 ~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
+ ....|+++.|++..+++ +..+|+++|.+++.++++|
T Consensus 238 ~-~~~~dll~~ll~~~~~~--~~~ls~~ei~~~~~~l~~A 274 (467)
T 3dbg_A 238 G-QKPDDLLTALLEAKDDN--GDPIGEQEIHDQVVAILTP 274 (467)
T ss_dssp C-SSCCSHHHHHTTC----------CHHHHHHHHHHHHHH
T ss_pred C-CCchHHHHHHHhhccCC--CCCCCHHHHHHHHHHHHHH
Confidence 1 24679999999886543 2369999999999999875
No 22
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding; HET: HEM PXI; 1.7A {Streptomyces venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A* 2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Probab=99.95 E-value=2.8e-27 Score=218.86 Aligned_cols=235 Identities=15% Similarity=0.152 Sum_probs=168.6
Q ss_pred CCCCCCCCCCCCCeeeecc-cCCCCchHHHHHHHHhcCCeeEEec-CCcCEEEecCHHHHHHHHHhcccccccCCccccc
Q 040102 30 TTSSLPPSPMALPIIGHLH-LLAPIPHQALHKLSIRYGPLIHLFL-GSVPCIVACSPETAKEILKTHETSFCDRPISAAV 107 (308)
Q Consensus 30 ~~~~~pPgP~~~PllGnl~-~l~~~~~~~~~~~~~~yG~i~~~~~-g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~ 107 (308)
+.++.||||+++|++||+. .+..+++..+.++ ++||||+++++ |+.++++++||+++++||.++ .|++++.....
T Consensus 23 ~~~~~~PGP~~~p~lG~~~~~~~~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~ 99 (436)
T 2cd8_A 23 RTQQGTTASPPVLDLGALGQDFAADPYPTYARL-RAEGPAHRVRTPEGDEVWLVVGYDRARAVLADP--RFSKDWRNSTT 99 (436)
T ss_dssp -----------CCBHHHHHHHHHHCCHHHHHHH-HTTCSEEEEECSSCCEEEEECSHHHHHHHHHCT--TEECCGGGCSS
T ss_pred hhccCCCCCCccccCCCCCcccccChHHHHHHH-HHhCCeeeeccCCCCeEEEEcCHHHHHHHHcCC--CCccccccccc
Confidence 3346699999999999986 4456789999999 89999999998 889999999999999999876 68888642111
Q ss_pred ccc---ccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHH-HHHHHH
Q 040102 108 DYL---TYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKEL-IRLTNN 183 (308)
Q Consensus 108 ~~~---~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~ 183 (308)
... ...+.++ +..+|+.|+.+||++. +.|++++++.+.+.+.++++++++.|.+ ..++++|+...+ ..++++
T Consensus 100 ~~~~~~~~~~~~l-~~~dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~--~~~~~vd~~~~~~~~~~~~ 175 (436)
T 2cd8_A 100 PLTEAEAALNHNM-LESDPPRHTRLRKLVA-REFTMRRVELLRPRVQEIVDGLVDAMLA--APDGRADLMESLAWPLPIT 175 (436)
T ss_dssp CCCTTGGGTCCSG-GGCCTTHHHHHHHHHG-GGSSHHHHHTTHHHHHHHHHHHHHHHHT--CTTSCEEHHHHTTTHHHHH
T ss_pred ccccccccccccc-cccCchHHHHHHHHhH-HhhCHHHHHHHHHHHHHHHHHHHHHHHh--ccCCCcchHHHHHHHHHHH
Confidence 110 1112344 4568999999999995 8999999999999999999999999975 225689999987 579999
Q ss_pred HHHHHHhcCcccCCchhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040102 184 VVSRMTMGQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKI 263 (308)
Q Consensus 184 vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 263 (308)
+|+. +||.+.+ ..+++.+..+.+. .. . + + ++..++.+.+.+++.++|+++++
T Consensus 176 vi~~-~~G~~~~----~~~~~~~~~~~~~---~~---~---~------~----~~~~~~~~~~~~~~~~~i~~r~~---- 227 (436)
T 2cd8_A 176 VISE-LLGVPEP----DRAAFRVWTDAFV---FP---D---D------P----AQAQTAMAEMSGYLSRLIDSKRG---- 227 (436)
T ss_dssp HHHH-HHTCCGG----GHHHHHHHHHHHH---SC---S---S------T----THHHHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHH-HhCCCHH----HHHHHHHHHHHHh---cc---C---C------H----HHHHHHHHHHHHHHHHHHHHHhc----
Confidence 9997 7998763 2334544443322 10 0 0 1 24456677788888888877642
Q ss_pred hhccCCCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 264 NKETGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 264 ~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
+...|+++.|++..+++ +..+|+++|.+++.++++|
T Consensus 228 -------~~~~d~l~~ll~~~~~~--~~~ls~~ei~~~~~~l~~A 263 (436)
T 2cd8_A 228 -------QDGEDLLSALVRTSDED--GSRLTSEELLGMAHILLVA 263 (436)
T ss_dssp -------SCCCSHHHHHHHHHHHC--TTTSCHHHHHHHHHHHHHT
T ss_pred -------CCCCCHHHHHHHhhhcc--CCCCCHHHHHHHHHHHHHH
Confidence 13469999999876432 2369999999999999876
No 23
>3v8d_A Cholesterol 7-alpha-monooxygenase; cytochrome, oxidoreductase; HET: HEM 0GV; 1.90A {Homo sapiens} PDB: 3sn5_A* 3dax_A*
Probab=99.94 E-value=8.5e-28 Score=225.31 Aligned_cols=256 Identities=11% Similarity=0.061 Sum_probs=181.7
Q ss_pred ccCCCCCCCCCCC-CCeeeecccCCCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcc-cccccCCccc
Q 040102 28 SKTTSSLPPSPMA-LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHE-TSFCDRPISA 105 (308)
Q Consensus 28 ~~~~~~~pPgP~~-~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~-~~f~~Rp~~~ 105 (308)
+++..+.||||++ +|++||++++..+++..+.+|.++||||+++++|+.+++||+||++++++|.++. ..|++++...
T Consensus 8 ~~~~~~~PPgp~~~lPliG~~~~~~~~p~~~~~~l~~~yGpv~~~~lg~~~~vvv~~p~~v~~vl~~~~~~~~~~~~~~~ 87 (491)
T 3v8d_A 8 RRRQTGEPPLENGLIPYLGCALQFGANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHFAL 87 (491)
T ss_dssp CCCCTTSCCEEEEEESSTTTTGGGTCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHSCCTTEESSHHHHHH
T ss_pred hccCCCCCCCCCCCcceeccHHHHhcCHHHHHHHHHHHcCCceEEEECCEEEEEEcCHHHHHHHHhcCCccchHHHHHHH
Confidence 3445678999999 6999999999888999999999999999999999999999999999999997654 3455554322
Q ss_pred cccccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhcc---CCCceehHHHHHHHHH
Q 040102 106 AVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAK---ASEAVDVGKELIRLTN 182 (308)
Q Consensus 106 ~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~---~~~~vd~~~~~~~~t~ 182 (308)
....+ +. +.+...+|+.|+.+||.+. ++|++++++.+.+.+.+++..+++.+..... ...++++.+.+..+++
T Consensus 88 ~~~~~--g~-~~~~~~~g~~~~~~Rr~~~-~~f~~~~l~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~ 163 (491)
T 3v8d_A 88 SAKAF--GH-RSIDPMDGNTTENINDTFI-KTLQGHALNSLTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVMF 163 (491)
T ss_dssp HHHHH--TC-CCCCGGGSSBCCCHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHSCCSSCGGGGCSCEEEEHHHHHHHHHH
T ss_pred HHHhc--CC-cccccccchhHHHHHHHHH-HHcCccchHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCHHHHHHHHHH
Confidence 22222 22 2334457999999999885 7999999999999999999998875532211 2357899999999999
Q ss_pred HHHHHHHhcCcccCCchhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040102 183 NVVSRMTMGQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARK 262 (308)
Q Consensus 183 ~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 262 (308)
++++..+||.+....+.....+.+.++.+.. +.+.+|.+.+..+.+..+++.++.+.+.+.+.+.+. +..
T Consensus 164 ~~~~~~~fG~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~p~~~~~~~~~a~~~l~~~~~~~~~----~~~ 233 (491)
T 3v8d_A 164 EAGYLTIFGRDLTRRDTQKAHILNNLDNFKQ------FDKVFPALVAGLPIHMFRTAHNAREKLAESLRHENL----QKR 233 (491)
T ss_dssp HHHHHHHHCBCCSCGGGHHHHHHHHHHHHHH------HHHHHHHHHTTCCGGGCHHHHHHHHHHHHHTSHHHH----TTC
T ss_pred HHHHHHHcCccccccchhhhhhHHHHHHHHH------HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH----hcc
Confidence 9999999999874322222334444433321 233455443321333345666666665554433322 211
Q ss_pred hhhccCCCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 263 INKETGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 263 ~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
+...|+++.++...++. ..++++++.++++.+++|
T Consensus 234 --------~~~~d~l~~l~~~~~~~---~~~~~~ei~~~~~~~~~a 268 (491)
T 3v8d_A 234 --------ESISELISLRMFLNDTL---STFDDLEKAKTHLVVLWA 268 (491)
T ss_dssp --------BSCCHHHHHHHHHHHHH---BCCCHHHHHHHHHHHHHH
T ss_pred --------ccccHHHHHHHHHhhcc---CCCchHHHHHHHHHHHHH
Confidence 13569999999876443 269999999999998865
No 24
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR, atomic resolutio structural genomics/proteomics initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum} SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A* 1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A* 1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Probab=99.94 E-value=3.7e-25 Score=202.52 Aligned_cols=233 Identities=9% Similarity=0.055 Sum_probs=169.1
Q ss_pred CCCCCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecC-CcCEEEecCHHHHHHHHHhcc-cccccCCccccccc--
Q 040102 34 LPPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG-SVPCIVACSPETAKEILKTHE-TSFCDRPISAAVDY-- 109 (308)
Q Consensus 34 ~pPgP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g-~~~~vvi~d~e~~~evl~~~~-~~f~~Rp~~~~~~~-- 109 (308)
+||||+++|++||+++ +|+..+.+|. +||||++++++ +.+.+|+++++.++++|.++. ..+.+||.......
T Consensus 2 ~pPGp~~~P~~g~~~~---~p~~~~~~l~-~~Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~~~~~~~~r~~~~~~~~~~ 77 (404)
T 1jfb_A 2 MASGAPSFPFSRASGP---EPPAEFAKLR-ATNPVSQVKLFDGSLAWLVTKHKDVCFVATSEKLSKVRTRQGFPELSASG 77 (404)
T ss_dssp ----CCBSSCCCSSTT---SCCTHHHHHH-HHCSEEEEECTTSCEEEEECSHHHHHHHHHCTTEECCTTSTTCCCCSHHH
T ss_pred CCCCCCCCCCCCCcCC---CccHHHHHHH-HhCCeeeeecCCCCceEEEecHHHHHHHHcCCcccccccccCCccccccc
Confidence 5999999999999864 7888999996 59999999874 566777899999999998763 45556664432221
Q ss_pred --cccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHH
Q 040102 110 --LTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSR 187 (308)
Q Consensus 110 --~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~ 187 (308)
...+..+ ++..+|+.|+++||++. +.|++++++.+.+.+.++++++++.|.+..+++.++|+...+...+.++++.
T Consensus 78 ~~~~~~~~~-l~~~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~d~~~~~~~~~~~~i~~ 155 (404)
T 1jfb_A 78 KQAAKAKPT-FVDMDPPEHMHQRSMVE-PTFTPEAVKNLQPYIQRTVDDLLEQMKQKGCANGPVDLVKEFALPVPSYIIY 155 (404)
T ss_dssp HHHTTSCCC-GGGCCTTHHHHHHTTTG-GGGSHHHHHHHHHHHHHHHHHHHHHHHHHCSTTSCEEHHHHTTTHHHHHHHH
T ss_pred cchhcccCc-ccccCchhHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHH
Confidence 1112223 34457999999999985 8999999999999999999999999987433356899999999999999999
Q ss_pred HHhcCcccCCchhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 040102 188 MTMGQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKET 267 (308)
Q Consensus 188 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~ 267 (308)
.+||.+++. .++....... .. .+ . +..++..+..+.+.+++.++|++++++
T Consensus 156 ~~~G~~~~~-----~~~~~~~~~~---~~--------~~---~---~~~~~~~~~~~~~~~~~~~~i~~r~~~------- 206 (404)
T 1jfb_A 156 TLLGVPFND-----LEYLTQQNAI---RT--------NG---S---STAREASAANQELLDYLAILVEQRLVE------- 206 (404)
T ss_dssp HHHTCCGGG-----HHHHHHHHHH---HH--------CT---T---SCHHHHHHHHHHHHHHHHHHHHHHHHS-------
T ss_pred HHcCCCHHH-----HHHHHHHHHH---Hh--------cc---C---cchHHHHHHHHHHHHHHHHHHHHHHhC-------
Confidence 999987732 2222222211 10 00 0 112455667778888888888877532
Q ss_pred CCCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 268 GKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 268 ~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
...|+++.|++...++ ..+|+++|.+++.++++|
T Consensus 207 ----~~~d~l~~ll~~~~~~---~~l~~~ei~~~~~~l~~A 240 (404)
T 1jfb_A 207 ----PKDDIISKLCTEQVKP---GNIDKSDAVQIAFLLLVA 240 (404)
T ss_dssp ----CCSSHHHHHHHHTTTT---TSSCHHHHHHHHHHHHHH
T ss_pred ----CCCcHHHHHHHhhccC---CCCCHHHHHHHHHHHHHH
Confidence 3469999999754322 269999999999999875
No 25
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide, monooxygenase, metab enzyme, oxidoreductase, heme, cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A* 4enh_A* 4fia_A*
Probab=99.93 E-value=6.6e-25 Score=203.63 Aligned_cols=240 Identities=15% Similarity=0.185 Sum_probs=172.4
Q ss_pred CCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCcccc-cc-ccc--cCCcceEeccCChhhh
Q 040102 52 PIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAA-VD-YLT--YGSADFSFAPYGPYWK 127 (308)
Q Consensus 52 ~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~-~~-~~~--~~~~~~~~~~~g~~Wk 127 (308)
+.+|..+.+|.++||||+++++|++++|+++||++++++|.+ ..|.+++.... .. ... ..+.+++++.+|+.|+
T Consensus 10 ~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~p~~~~~il~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~w~ 87 (456)
T 3mdm_A 10 RVLQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFLMS--TKYNKDSKMYRALQTVFGERLFGQGLVSECNYERWH 87 (456)
T ss_dssp CCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTC--TTSCCCHHHHHHHHEETTEESSTTSTTTCCCHHHHH
T ss_pred chHHHHHHHHHHHhCCeEEEEeCCCCEEEECCHHHHHHHHhh--ccccccchhHHHHHHhhcccccCCCcccCCChHHHH
Confidence 557889999999999999999999999999999999999964 34555543211 11 010 0123455555899999
Q ss_pred hhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHhcCcccCCchhHHHHHHH
Q 040102 128 FMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMGQICSINDKEADEVRKL 207 (308)
Q Consensus 128 ~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~ 207 (308)
++||++. +.|++++++.+.+.+.++++++++.+.+..+++.++|+.+.+.++++|+|+.++||.+++..+....++.+.
T Consensus 88 ~~Rr~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fG~~~~~~~~~~~~~~~~ 166 (456)
T 3mdm_A 88 KQRRVID-LAFSRSSLVSLMETFNEKAEQLVEILEAKADGQTPVSMQDMLTYTAMDILAKAAFGMETSMLLGAQKPLSQA 166 (456)
T ss_dssp HHHHHHG-GGGSHHHHHTTHHHHHHHHHHHHHHHHHTCSSSSCEEHHHHHHHHHHHHHHHHHHSCCCCGGGTCCHHHHHH
T ss_pred HHHhhcc-cccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHHHHHHHHHHcCCChhhhcccccHHHHH
Confidence 9999996 899999999999999999999999998755556799999999999999999999999985422222445554
Q ss_pred HHHHHHHhCCCCcccccccccccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCHHHHHhhcccc
Q 040102 208 VQETAELTGKFNLQDYIWFCKNIDLQ-GFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPMDLLDMLLDISED 286 (308)
Q Consensus 208 ~~~~~~~~~~~~~~~~~P~l~~~~~~-~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~ 286 (308)
+..+...... ...|++.+++.. ...++..+..+.+++++.++++++++..+ .+. ....|+++.|++..+
T Consensus 167 ~~~~~~~~~~----~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~----~~~-~~~~d~l~~ll~~~~- 236 (456)
T 3mdm_A 167 VKLMLEGITA----SRNTLAKFLPGKRKQLREVRESIRFLRQVGRDWVQRRREALK----RGE-EVPADILTQILKAEE- 236 (456)
T ss_dssp HHHHHHHHHH----HHHSCGGGCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTC-CCCCCHHHHHHHHTS-
T ss_pred HHHHHHHHHH----HHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----ccc-cchhhHHHHHHHhcC-
Confidence 4444332211 012223332110 11234556667788888888888876543 211 245799999998742
Q ss_pred ccccCCCCHHHHHHHHHHHhcC
Q 040102 287 ESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 287 ~~~~~~lt~~~i~~~~~~l~~A 308 (308)
..+++++|.+++.++++|
T Consensus 237 ----~~~~~~~l~~~~~~l~~A 254 (456)
T 3mdm_A 237 ----GAQDDEGLLDNFVTFFIA 254 (456)
T ss_dssp ----SCSSSHHHHHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHHHHHH
Confidence 158999999999998875
No 26
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A {Pseudomonas SP} SCOP: a.104.1.1
Probab=99.92 E-value=1.3e-24 Score=200.50 Aligned_cols=245 Identities=15% Similarity=0.116 Sum_probs=170.7
Q ss_pred CCCCCCCCCCCCeeeecccCC-----CCchHHHHHHHHhcCCeeEEec-CCcCEEEecCHHHHHHHHHhcccccccCCc-
Q 040102 31 TSSLPPSPMALPIIGHLHLLA-----PIPHQALHKLSIRYGPLIHLFL-GSVPCIVACSPETAKEILKTHETSFCDRPI- 103 (308)
Q Consensus 31 ~~~~pPgP~~~PllGnl~~l~-----~~~~~~~~~~~~~yG~i~~~~~-g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~- 103 (308)
+.++||| ++|++.... .+++..+.+|.+ ||||+++++ |+.+++|++|+++|+++|.+ ...|++||.
T Consensus 4 ~~~~pp~-----~~g~l~~~~~~~~~~~p~~~~~~l~~-~gpv~~~~~~g~~~~vvv~~~~~v~~vl~~-~~~fs~r~~~ 76 (428)
T 1cpt_A 4 RATIPEH-----IARTVILPQGYADDEVIYPAFKWLRD-EQPLAMAHIEGYDPMWIATKHADVMQIGKQ-PGLFSNAEGS 76 (428)
T ss_dssp TCCSCHH-----HHHHHHSSGGGGCHHHHHHHHHHHHH-HCSEEEECCTTSCCEEEECSHHHHHHHHHC-TTTEESSSSC
T ss_pred ccccchh-----hhcccCChhhhcccCCccHHHHHHHH-hCCeeeccccCCCCeEEEccHHHHHHHHcC-chhccCcccc
Confidence 4578888 999876552 347888999976 799999998 78999999999999999965 467999885
Q ss_pred cccc---c-c-c---cc---CCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCcee
Q 040102 104 SAAV---D-Y-L---TY---GSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVD 172 (308)
Q Consensus 104 ~~~~---~-~-~---~~---~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd 172 (308)
.... . . + .. .....++..+|+.|+.+||+++ +.|++++++.+.+.+.++++.+++.|.+. +.++|
T Consensus 77 ~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~g~~~~~~Rr~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~---~~~~d 152 (428)
T 1cpt_A 77 EILYDQNNEAFMRSISGGCPHVIDSLTSMDPPTHTAYRGLTL-NWFQPASIRKLEENIRRIAQASVQRLLDF---DGECD 152 (428)
T ss_dssp SSCCCHHHHHHHHHHTTTSSCSSCCGGGCCTTHHHHHHHHHH-TTSSHHHHGGGHHHHHHHHHHHHHHHHTS---SSEEE
T ss_pred ccCCcccccchhccccccccccccccccCChHHHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHHHHh---CCCee
Confidence 3221 1 1 2 11 1012334557999999999996 89999999999999999999999998762 35799
Q ss_pred hHHHH-HHHHHHHHHHHHhcCcccCCchhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHH
Q 040102 173 VGKEL-IRLTNNVVSRMTMGQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMME 251 (308)
Q Consensus 173 ~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~ 251 (308)
+...+ ..+++++|+.+ ||.+.+ ..+++.+..+.+...... ....+|++.++ .+.+.++..+..+.+.+++.
T Consensus 153 ~~~~~~~~~~~~vi~~~-fG~~~~----~~~~~~~~~~~~~~~~~~--~~~~~P~l~~~-~~~~~~~~~~~~~~~~~~~~ 224 (428)
T 1cpt_A 153 FMTDCALYYPLHVVMTA-LGVPED----DEPLMLKLTQDFFGVHEP--DEQAVAAPRQS-ADEAARRFHETIATFYDYFN 224 (428)
T ss_dssp HHHHTTTTHHHHHHHHH-HTCCGG----GHHHHHHHHHTTTCC-------------------CHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhhhHHHHHHHH-cCCCHh----HHHHHHHHHHHHHhcccc--ccccccccccc-chhhHHHHHHHHHHHHHHHH
Confidence 98655 57999999999 999873 223344433322111110 11234555443 12334566677788888888
Q ss_pred HHHHHHHHHhhhhhccCCCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 252 RILKEHQEARKINKETGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 252 ~ii~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
++|+++++ + ...|+++.|++...+ +..+|+++|++++.++++|
T Consensus 225 ~~i~~r~~-------~----~~~dll~~ll~~~~~---~~~ls~~ei~~~~~~l~~A 267 (428)
T 1cpt_A 225 GFTVDRRS-------C----PKDDVMSLLANSKLD---GNYIDDKYINAYYVAIATA 267 (428)
T ss_dssp HHHHHHTT-------S----CCSSHHHHHHHCBSS---SSBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-------C----CCCcHHHHHHhcccc---CCCCCHHHHHHHHHHHHHH
Confidence 88877642 1 346999999987643 2369999999999999875
No 27
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A {Amycolatopsis orientalis} SCOP: a.104.1.1
Probab=99.92 E-value=7.1e-24 Score=194.26 Aligned_cols=227 Identities=15% Similarity=0.149 Sum_probs=168.4
Q ss_pred CCCCCCCCCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEe----c-CC-cCEEEecCHHHHHHHH-HhcccccccCC
Q 040102 30 TTSSLPPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLF----L-GS-VPCIVACSPETAKEIL-KTHETSFCDRP 102 (308)
Q Consensus 30 ~~~~~pPgP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~----~-g~-~~~vvi~d~e~~~evl-~~~~~~f~~Rp 102 (308)
...++||||+++|+. +..+++..+.+| ++||||++++ + |+ +++++++||+++++|| .++ .|++++
T Consensus 7 ~~~~lppgp~~~p~~-----~~~~p~~~~~~l-~~yGpv~~~~~~~~~~~~~~~~vvv~~~~~i~~vl~~~~--~~~~~~ 78 (406)
T 1ued_A 7 QVAPLLREPANFQLR-----TNCDPHEDNFGL-RAHGPLVRIVGESSTQLGRDFVWQAHGYEVVRRILGDHE--HFTTRP 78 (406)
T ss_dssp SCCCEEECCTTTTCE-----ETTEECHHHHHH-HTTCSEEEEESHHHHHTTSSCEEEECSHHHHHHHHHCCS--SEECCC
T ss_pred CCCCCcccCcccCCC-----CCCCcHHHHHHH-HHhCCeeeecccccCCCCCccEEEEcCHHHHHHHHhhCc--cccccc
Confidence 346789999999998 456789999999 9999999999 7 88 9999999999999999 443 366666
Q ss_pred cccccc-ccc---cCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHH
Q 040102 103 ISAAVD-YLT---YGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELI 178 (308)
Q Consensus 103 ~~~~~~-~~~---~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~ 178 (308)
...... .+. ..++++ +..+|+.|+.+||++. +.|++++++.+.+.+.++++++++.|.+ .++++|+.+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~l-~~~~g~~~~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~g~~~d~~~~~~ 153 (406)
T 1ued_A 79 QFTQSKSGAHVEAQFVGQI-STYDPPEHTRLRKMLT-PEFTVRRIRRMEPAIQSLIDDRLDLLEA---EGPSADLQGLFA 153 (406)
T ss_dssp CC---------CGGGTTCG-GGCCTTHHHHHHHHHG-GGSSHHHHHHHHHHHHHHHHHHHHHHHH---HCTTEEHHHHTH
T ss_pred ccccccccccccccccccc-ccCCCHHHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCeeHHHHHH
Confidence 421110 111 012234 4568999999999996 8999999999999999999999999975 256899999887
Q ss_pred H-HHHHHHHHHHhcCcccCCchhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 040102 179 R-LTNNVVSRMTMGQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEH 257 (308)
Q Consensus 179 ~-~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~ 257 (308)
. +++++|+ .+||.+.+ +.+++.+..+.+.. . . .. .++..+..+.+.+++.++|+++
T Consensus 154 ~~~~~~vi~-~~~G~~~~----~~~~~~~~~~~~~~----~-------~-----~~--~~~~~~~~~~~~~~~~~~i~~r 210 (406)
T 1ued_A 154 DPVGAHALC-ELLGIPRD----DQREFVRRIRRNAD----L-------S-----RG--LKARAADSAAFNRYLDNLLARQ 210 (406)
T ss_dssp HHHHHHHHH-HHHTCCHH----HHHHHHHHHHHCC-------------------CC--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHH-HHcCCCHH----HHHHHHHHHHHHHh----c-------c-----CC--HHHHHHHHHHHHHHHHHHHHHH
Confidence 5 9999999 57998752 22344443332111 0 0 01 2355667788888888888877
Q ss_pred HHHhhhhhccCCCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 258 QEARKINKETGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 258 ~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
+++ ...|+++.|++.. + ..+|+++|.+++.++++|
T Consensus 211 ~~~-----------~~~d~l~~ll~~~-~----~~ls~~ei~~~~~~l~~A 245 (406)
T 1ued_A 211 RAD-----------PDDGLLGMIVRDH-G----DNVTDEELKGLCTALILG 245 (406)
T ss_dssp HHS-----------CCSSHHHHHHHHH-G----GGSCHHHHHHHHHHHHHH
T ss_pred HhC-----------CCCCHHHHHHHhc-C----CCCCHHHHHHHHHHHHHH
Confidence 532 2469999999875 2 259999999999999875
No 28
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A*
Probab=99.92 E-value=4.9e-25 Score=206.24 Aligned_cols=257 Identities=12% Similarity=0.065 Sum_probs=165.1
Q ss_pred hccCCCCCCCCCCC-CCeeeecccCCCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcc-cccccCCcc
Q 040102 27 RSKTTSSLPPSPMA-LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHE-TSFCDRPIS 104 (308)
Q Consensus 27 ~~~~~~~~pPgP~~-~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~-~~f~~Rp~~ 104 (308)
++++..+.||||++ +|++||++++..+++..+.+|+++||++|++++|+.++|||+||+++++++.++. ..|..++..
T Consensus 7 ~~~~~~~~pPgp~~~~P~iG~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~~~~vvv~dp~~~~~il~~~~~~~~~~~~~~ 86 (491)
T 3dax_A 7 SRRRQTGEPPLENGLIPYLGCALQFGANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHFA 86 (491)
T ss_dssp CCCCCTTCCCEEEEEESCTTTTGGGTCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGTHHHHSCCTTEESSHHHHH
T ss_pred hhccCCCCCCcCCCcccchhhHHHHhhCHHHHHHHHHHhcCCeEEEEECCeEEEEEcChHHHHHHHcCCccCChHHHHHH
Confidence 33444567999998 8999999998777889999999999999999999999999999999999997654 334333211
Q ss_pred ccccccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHh---ccCCCceehHHHHHHHH
Q 040102 105 AAVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKK---AKASEAVDVGKELIRLT 181 (308)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~---~~~~~~vd~~~~~~~~t 181 (308)
...... + .+++...+|+.|+.+|+.+. +.|+.++++.+.+.+.+++..+++..... .....++++...+..++
T Consensus 87 -~~~~~~-g-~~~~~~~~g~~w~~~r~~~~-~~f~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i 162 (491)
T 3dax_A 87 -TSAKAF-G-HRSIDPMDGNTTENINDTFI-KTLQGHALNSLTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVM 162 (491)
T ss_dssp -HHHHHH-T-CCCCCGGGTSBCCCHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHC----------CCEEEEHHHHHHHHH
T ss_pred -HHHHHc-C-CCcccccchhHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHHHHHhhccCCcCCCCceeccHHHHHHHHH
Confidence 111111 2 23331446899999999986 68999999998888888877777654321 11123688999999999
Q ss_pred HHHHHHHHhcCcccCCchhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040102 182 NNVVSRMTMGQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEAR 261 (308)
Q Consensus 182 ~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~ 261 (308)
++++++++||.+.+..+.....+.+..+... .+.+++|++.+..+....++..+..+.+.+. +++++.++
T Consensus 163 ~~~~~~~~fG~~~~~~~~~~~~~~~~~~~~~------~~~~~~p~l~~~lp~~~~~~~~~~~~~~~~~---~~~~~~~~- 232 (491)
T 3dax_A 163 FEAGYLTIFGRDLTRRDTQKAHILNNLDNFK------QFDKVFPALVAGLPIHMFRTAHNAREKLAES---LRHENLQK- 232 (491)
T ss_dssp HHHHHHHHHCBCSTTGGGHHHHHHHHHHHHH------HHHHHHHHHHTTCCGGGSHHHHHHHHHHHHH---TSHHHHTT-
T ss_pred HHHhHHHHcCcccccccchhhhhhHHHHHHH------HHHHHhHHHHHhCCHhhhhHHHHHHHHHHHH---HHHHHhhc-
Confidence 9999999999887431111111112211111 1234566543311222223343333333222 22222211
Q ss_pred hhhhccCCCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 262 KINKETGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 262 ~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
. ....|+++.+++..++.+ .++++++.++++++++|
T Consensus 233 -------~-~~~~d~l~~ll~~~~~~~---~~~~~~i~~~~~~~~~a 268 (491)
T 3dax_A 233 -------R-ESISELISLRMFLNDTLS---TFDDLEKAKTHLVVLWA 268 (491)
T ss_dssp -------C-BSCCHHHHHHHHHHHHHB---CCCHHHHHHHHHHHHHH
T ss_pred -------c-cchhHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHH
Confidence 1 245799999987654321 58999999888887764
No 29
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.50A {Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A* 3cv9_A*
Probab=99.91 E-value=7e-23 Score=188.02 Aligned_cols=230 Identities=13% Similarity=0.176 Sum_probs=169.0
Q ss_pred CCCCCCCCCCeeeecccCCCCchHHHHHHHHhc-CCeeEEec-CCcCEEEecCHHHHHHHHHhcccccccCCcccccccc
Q 040102 33 SLPPSPMALPIIGHLHLLAPIPHQALHKLSIRY-GPLIHLFL-GSVPCIVACSPETAKEILKTHETSFCDRPISAAVDYL 110 (308)
Q Consensus 33 ~~pPgP~~~PllGnl~~l~~~~~~~~~~~~~~y-G~i~~~~~-g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~~~~ 110 (308)
..||||++.|.+.--..+..+++..+.+| ++| |||+++++ |+.++++++||+++++||.++ .|++++........
T Consensus 5 ~~~~~~~~~P~~~~~~~~~~~p~~~~~~l-~~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~~~~~~~~~~~~~~ 81 (412)
T 2zbx_A 5 ATTPQTTDAPAFPSNRSCPYQLPDGYAQL-RDTPGPLHRVTLYDGRQAWVVTKHEAARKLLGDP--RLSSNRTDDNFPAT 81 (412)
T ss_dssp ---CCCCSSCBSSCCCSSTTSCCHHHHHH-HHSSSSEEEEECTTSCEEEEECSHHHHHHHHTCT--TEECCTTSTTSCCC
T ss_pred CCCCCCCCCCCCCCCchhccChHHHHHHH-HhcCCCeEeeccCCCCcEEEEecHHHHHHHHcCc--ccccCccccccccc
Confidence 35789998887643344567889999999 778 99999998 999999999999999999865 35565531111111
Q ss_pred ------c-cCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHH-HHHH
Q 040102 111 ------T-YGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELI-RLTN 182 (308)
Q Consensus 111 ------~-~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~-~~t~ 182 (308)
. ..++++ +..+|+.|+.+||++. +.|++++++.+.+.+.++++++++.|.+ .+.++|+...+. .+++
T Consensus 82 ~~~~~~~~~~~~~l-~~~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~g~~~d~~~~~~~~~~~ 156 (412)
T 2zbx_A 82 SPRFEAVRESPQAF-IGLDPPEHGTRRRMTI-SEFTVKRIKGMRPEVEEVVHGFLDEMLA---AGPTADLVSQFALPVPS 156 (412)
T ss_dssp SGGGC----CCCCG-GGCCTTHHHHHHTTTG-GGGSHHHHHHHHHHHHHHHHHHHHHHHH---HCSCEEHHHHTTTHHHH
T ss_pred cccccccccccccc-ccCCcHHHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCccHHHHHHHHHHH
Confidence 0 012234 4568999999999996 7899999999999999999999999975 256899999887 4999
Q ss_pred HHHHHHHhcCcccCCchhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040102 183 NVVSRMTMGQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARK 262 (308)
Q Consensus 183 ~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 262 (308)
++|+. +||.+.+ ..+.+.+....++.. ..+ ++..+..+.+.+++.++|++++++
T Consensus 157 ~vi~~-~~G~~~~----~~~~~~~~~~~~~~~-----------------~~~--~~~~~~~~~~~~~~~~~i~~r~~~-- 210 (412)
T 2zbx_A 157 MVICR-LLGVPYA----DHEFFQDASKRLVQS-----------------TDA--QSALTARNDLAGYLDGLITQFQTE-- 210 (412)
T ss_dssp HHHHH-HHTCCGG----GHHHHHHHHHHHHHC-----------------SSH--HHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHH-HcCCCHH----HHHHHHHHHHHHhcc-----------------CcH--HHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 99996 7998763 233454444432210 011 455667778888888888877532
Q ss_pred hhhccCCCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 263 INKETGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 263 ~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
...|+++.|++..++ +..+|+++|.+++.++++|
T Consensus 211 ---------~~~d~l~~ll~~~~~---~~~ls~~ei~~~~~~~~~A 244 (412)
T 2zbx_A 211 ---------PGAGLVGALVADQLA---NGEIDREELISTAMLLLIA 244 (412)
T ss_dssp ---------CCSSHHHHHHHTTTT---TTSSCHHHHHHHHHHHHHH
T ss_pred ---------CCCCHHHHHHHhccc---CCCCCHHHHHHHHHHHHHH
Confidence 246999999987643 2369999999999999875
No 30
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid complex, riken structural genomics/proteomics initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Probab=99.91 E-value=3.4e-23 Score=190.27 Aligned_cols=233 Identities=13% Similarity=0.062 Sum_probs=167.9
Q ss_pred CCCCeeeecccCCCCchHHHHHHHHhcC-CeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCccc--cccccccCCc
Q 040102 39 MALPIIGHLHLLAPIPHQALHKLSIRYG-PLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISA--AVDYLTYGSA 115 (308)
Q Consensus 39 ~~~PllGnl~~l~~~~~~~~~~~~~~yG-~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~--~~~~~~~~~~ 115 (308)
|+.|++||++++..+++..+.++.++|| ||+++++++.++++++||++++.++ + ...|+.++..+ ....+. +..
T Consensus 6 Pg~P~lG~~~~~~~~p~~~~~~l~~~yg~pv~~~~~~g~~~v~v~~~~~~~~l~-~-~~~~~~~~~~~~~~~~~~~-g~~ 82 (417)
T 1izo_A 6 PHDKSLDNSLTLLKEGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFY-D-TDRFQRQNALPKRVQKSLF-GVN 82 (417)
T ss_dssp CBCCCTTHHHHHHHHGGGHHHHHHHHTTSSEEEEEETTEEEEEECSHHHHHHHT-C-TTTEECTTCSCHHHHTTTT-CTT
T ss_pred CCCCccchHHHHhhCcHHHHHHHHHHhCCCeEEeecCCccEEEECCHHHHHHHh-c-ccccccccccccchhhhhc-ccc
Confidence 3349999999886678999999999998 9999999999999999999998554 3 34565543221 111121 212
Q ss_pred ceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHhcCccc
Q 040102 116 DFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMGQICS 195 (308)
Q Consensus 116 ~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~~~~ 195 (308)
+ ++..+|+.|+.+||++. +.|++++++.+.+.+.++++++++.|.+ +.++|+.+.+.++++++|+++ ||.+++
T Consensus 83 ~-l~~~dg~~h~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~----~~~~dl~~~~~~~~~~vi~~~-~G~~~~ 155 (417)
T 1izo_A 83 A-IQGMDGSAHIHRKMLFL-SLMTPPHQKRLAELMTEEWKAAVTRWEK----ADEVVLFEEAKEILCRVACYW-AGVPLK 155 (417)
T ss_dssp C-GGGCCHHHHHHHHHHHH-HTSSHHHHHHHHHHHHHHHHHHHHHHTT----SSEEEHHHHHHHHHHHHHHHH-HTCCCC
T ss_pred c-eeecCChHHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHhc----CCCeeHHHHHHHHHHHHHHHH-cCCCCC
Confidence 3 34568999999999986 8999999999999999999999998854 468999999999999999998 699874
Q ss_pred CCchhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCC
Q 040102 196 INDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPMD 275 (308)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~d 275 (308)
.. +..++.+.+..+...... . .+..++..+..+.+++++.++|++++++.. . ....|
T Consensus 156 ~~--~~~~~~~~~~~~~~~~~~-----~---------~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~----~---~~~~d 212 (417)
T 1izo_A 156 ET--EVKERADDFIDMVDAFGA-----V---------GPRHWKGRRARPRAEEWIEVMIEDARAGLL----K---TTSGT 212 (417)
T ss_dssp TT--THHHHHHHHHHHHHHTTC-----C---------SHHHHHHHHHHHHHHHHHHHHHHHHHTTSS----C---CCTTS
T ss_pred ch--HHHHHHHHHHHHHhhccc-----C---------CccchhHHHHHHHHHHHHHHHHHHHHhhcc----C---CCcCC
Confidence 31 223333333332221110 0 112244567778889999999998875421 1 13569
Q ss_pred HHHHHhhccccccccCCCCHHHHHHHHHHHh
Q 040102 276 LLDMLLDISEDESSEIKLTRENIKAFILDIF 306 (308)
Q Consensus 276 ~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~ 306 (308)
+++.|++..+.+ +..++++++.+++..++
T Consensus 213 ~l~~ll~~~~~~--g~~l~~~~~~~~~~~~~ 241 (417)
T 1izo_A 213 ALHEMAFHTQED--GSQLDSRMAAIELINVL 241 (417)
T ss_dssp HHHHHHHCBCTT--SCBCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcccc--CCCCCHHHHHHHHHHHH
Confidence 999999875432 23689998888877654
No 31
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase, oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas paucimobilis} PDB: 3awq_A* 3awp_A*
Probab=99.91 E-value=4.4e-23 Score=189.36 Aligned_cols=234 Identities=12% Similarity=0.023 Sum_probs=166.5
Q ss_pred CCCCCCCCeeeecccCCCCchHHHHHHHHhc-CCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCccc--cccccc
Q 040102 35 PPSPMALPIIGHLHLLAPIPHQALHKLSIRY-GPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISA--AVDYLT 111 (308)
Q Consensus 35 pPgP~~~PllGnl~~l~~~~~~~~~~~~~~y-G~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~--~~~~~~ 111 (308)
|||| |++||++++..+++.++.++.++| |||+++++++.+++++++|+.++ ++.+. ..|+.++... ....+.
T Consensus 4 pPg~---P~iG~~~~~~~~p~~~~~~l~~~y~gpv~~~~~~g~~~~vv~~~~~~~-~l~~~-~~f~~~~~~~~~~~~~~~ 78 (415)
T 3awm_A 4 TPHT---KGPDETLSLLADPYRFISRQCQRLGANAFESRFLLKKTNCLKGAKAAE-IFYDT-TRFEREGAMPVAIQKTLL 78 (415)
T ss_dssp --------CCCCHHHHHHSTTTHHHHHHHHHTSSEEEEEETTEEEEEEESHHHHH-HHTCT-TTEECTTCSCHHHHTTTS
T ss_pred CCCC---CccchHHHHHhChHHHHHHHHHHhCCCeEEEecCCCcEEEEeCHHHHH-HHhcc-cccccccccchhhhhhcc
Confidence 6776 899999888667899999999999 79999999999999999999997 66443 5676654321 111121
Q ss_pred cCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHhc
Q 040102 112 YGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMG 191 (308)
Q Consensus 112 ~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG 191 (308)
+.+++ +..+|+.|+++||++. +.|++++++.+.+.+.+.++++++.|.+ +.++|+.+.+..+++++|+++ ||
T Consensus 79 -g~~~l-~~~dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~~~~----~~~vdl~~~~~~~~~~vi~~~-~G 150 (415)
T 3awm_A 79 -GQGGV-QGLDGETHRHRKQMFM-GLMTPERVRALAQLFEAEWRRAVPGWTR----KGEIVFYDELHEPLTRAVCAW-AG 150 (415)
T ss_dssp -CSSSG-GGCCHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHHHHHHHH----HSEEEHHHHHHHHHHHHHHHH-HT
T ss_pred -CCcce-eecCcHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHhhcc----CCcEeHHHHHHHHHHHHHHHH-cC
Confidence 21233 4568999999999985 8999999999999999999999999875 347999999999999999998 89
Q ss_pred CcccCCchhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCC
Q 040102 192 QICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDY 271 (308)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ 271 (308)
.+.+. .+..++.+.+... .... +. +.+..++..++.+.+.+++.++|++++++.. . .
T Consensus 151 ~~~~~--~~~~~~~~~~~~~---~~~~------~~-----~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~----~---~ 207 (415)
T 3awm_A 151 VPLPD--DEAGNRAGELRAL---FDAA------GS-----ASPRHLWSRLARRRVDAWAKRIIEGIRAGSI----G---S 207 (415)
T ss_dssp CCCCG--GGHHHHHHHHHHH---HHST------TC-----SSHHHHHHHHHHHHHHHHHHHHHHHHHHTSS----C---C
T ss_pred CCCCc--chHHHHHHHHHHH---HHHh------cc-----cCchHHHHHHHHHHHHHHHHHHHHHHHHhhh----c---C
Confidence 98743 1122232222222 1110 00 1112345667788889999999998875421 1 1
Q ss_pred CCCCHHHHHhhccccccccCCCCHHHHHHHHHHHh
Q 040102 272 APMDLLDMLLDISEDESSEIKLTRENIKAFILDIF 306 (308)
Q Consensus 272 ~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~ 306 (308)
...|+++.|++..+.+ +..++++++.+++..++
T Consensus 208 ~~~d~l~~ll~~~~~~--g~~~~~~~~~~~~~~~~ 240 (415)
T 3awm_A 208 GSGTAAYAIAWHRDRH--DDLLSPHVAAVELVNVL 240 (415)
T ss_dssp CTTSHHHHHHHCBCTT--SCBCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHhhhhcc--CCCCCHHHHHHHHHHHH
Confidence 3569999999875432 23699998888877665
No 32
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A*
Probab=99.90 E-value=1.4e-23 Score=196.78 Aligned_cols=261 Identities=10% Similarity=0.023 Sum_probs=160.9
Q ss_pred HHHhhccCCCCCCCCCCC-CCeeeecccCCCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccC
Q 040102 23 SIFRRSKTTSSLPPSPMA-LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDR 101 (308)
Q Consensus 23 ~~~~~~~~~~~~pPgP~~-~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~R 101 (308)
++|.++++..+.||||++ +|++||++++..+++..+.+|+++||++|++++|++++|||+||+++++++.++...|+.+
T Consensus 8 ~~~~~~~~~~~~PPgp~~~~P~iG~~~~~~~~~~~~~~~l~~kYG~i~~v~lg~~~~vvv~~p~~~~~il~~~~~~~~~~ 87 (498)
T 3b6h_A 8 LLSRRRTRRPGEPPLDLGSIPWLGYALDFGKDAASFLTRMKEKHGDIFTILVGGRYVTVLLDPHSYDAVVWEPRTRLDFH 87 (498)
T ss_dssp -----CCCCTTCCCEECCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHTCCTTTEECC
T ss_pred HHHHHhccCCCCCCCCCCCCcchhhHHHhccCHHHHHHHHHHHcCCeEEEEECCeeEEEEcCHHHHHHHHhCccccCCch
Confidence 455555556678999998 8999999988666889999999999999999999999999999999999997766434433
Q ss_pred Cccc-cccccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHh-ccCCCceehHHHHHH
Q 040102 102 PISA-AVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKK-AKASEAVDVGKELIR 179 (308)
Q Consensus 102 p~~~-~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~-~~~~~~vd~~~~~~~ 179 (308)
+... ...... + .+++ ..+|+.| ||++. +.|+.++++.+.+.+.+++...++..... ......+++...+..
T Consensus 88 ~~~~~~~~~~~-g-~~~~-~~~~~~~---rr~~~-~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 160 (498)
T 3b6h_A 88 AYAIFLMERIF-D-VQLP-HYSPSDE---KARMK-LTLLHRELQALTEAMYTNLHAVLLGDATEAGSGWHEMGLLDFSYS 160 (498)
T ss_dssp HHHHHHHHHTS-C-CCCT-TCCHHHH---HHHHH-TTSSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEHHHHHHH
T ss_pred hhHHHHHHHHc-C-CCcc-ccCHHHH---HHHHH-HhhchHhHHHHHHHHHHHHHHHHhhcccccCCCcceecHHHHHHH
Confidence 3211 111111 2 2333 4457777 45554 57898899988888777777766655432 111235789999999
Q ss_pred HHHHHHHHHHhcCcccCCchh-HHHHHHHHHHHHHHhCCCCcccccccccccccc-chHHHHHHHHHHHHHHHHHHHHHH
Q 040102 180 LTNNVVSRMTMGQICSINDKE-ADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQ-GFGKRLKEVRRKFDDMMERILKEH 257 (308)
Q Consensus 180 ~t~~vi~~~~fG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~-~~~~~~~~~~~~~~~~~~~ii~~~ 257 (308)
++++++++++||.+++..+.. ..++.+.+.++..... .+.+.+|++.+.+++ ...+++.+..+.+. +.+++++
T Consensus 161 vi~~~~~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 235 (498)
T 3b6h_A 161 FLLRAGYLTLYGIEALPRTHESQAQDRVHSADVFHTFR--QLDRLLPKLARGSLSVGDKDHMCSVKSRLW---KLLSPAR 235 (498)
T ss_dssp HHHHHHHHHHHCBSCSSCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHTCCCHHHHHHHHHHHHHHH---HHTCHHH
T ss_pred HHHHHHHHhhcCcccccccccchhhHHHhhHHHHHHHH--HHHhhHHHHHHHhcCchhhHHHHHHHHHHH---HHHHHHH
Confidence 999999999999987432211 1123333333332211 123456654331121 11123333333322 2222222
Q ss_pred HHHhhhhhccCCCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 258 QEARKINKETGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 258 ~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
+++ . ....|+++.+++..++.+ .++++++. +++++++|
T Consensus 236 ~~~--------~-~~~~d~l~~ll~~~~~~~---~~~~~~~~-~~~~~l~a 273 (498)
T 3b6h_A 236 LAR--------R-AHRSKWLESYLLHLEEMG---VSEEMQAR-ALVLQLWA 273 (498)
T ss_dssp HTT--------C-BSCCHHHHHHHHHHHHTT---CCHHHHHH-HHHHHHHH
T ss_pred Hhc--------c-ccHHHHHHHHHHHHHhCC---CCHHHHHH-HHHHHHHH
Confidence 211 1 245699999997754321 47888888 66665543
No 33
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron, metal-binding, oxidoreductase, substrate-soaking, cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB: 1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A* 2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A* 1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Probab=99.89 E-value=1.7e-22 Score=185.57 Aligned_cols=229 Identities=10% Similarity=0.097 Sum_probs=168.0
Q ss_pred CCCCCCCCCCCCCee--eecccC-----CCCchHHHHHHHHhcC--CeeEEe-cCCcCEEEecCHHHHHHHHHhcccccc
Q 040102 30 TTSSLPPSPMALPII--GHLHLL-----APIPHQALHKLSIRYG--PLIHLF-LGSVPCIVACSPETAKEILKTHETSFC 99 (308)
Q Consensus 30 ~~~~~pPgP~~~Pll--Gnl~~l-----~~~~~~~~~~~~~~yG--~i~~~~-~g~~~~vvi~d~e~~~evl~~~~~~f~ 99 (308)
+..++||||++.|.. +.+..+ ..+++..+.+|. +|| ||++++ +| ++++++|++++++||. +...|+
T Consensus 8 ~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~p~~~~~~l~-~~G~~pv~~~~~~g--~~vvv~~~~~v~~vl~-~~~~f~ 83 (415)
T 2zwu_A 8 SNANLAPLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQ-ESNVPDLVWTRCNG--GHWIATRGQLIREAYE-DYRHFS 83 (415)
T ss_dssp ---CCCCCCTTSCGGGBCCCCTTSCTTGGGCHHHHHHGGG-STTSCSEEEECGGG--CEEEECSHHHHHHHHH-CTTTEE
T ss_pred CccccCCCCCCCCcccccccCcCChhhcccChHHHHHHHH-hcCCCCeEEecCCC--CeEEEcCHHHHHHHHc-CccccC
Confidence 456899999999875 544222 235788999995 799 999999 77 7999999999999996 456798
Q ss_pred cCC-ccccccccccCCcc-eEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHH
Q 040102 100 DRP-ISAAVDYLTYGSAD-FSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKEL 177 (308)
Q Consensus 100 ~Rp-~~~~~~~~~~~~~~-~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~ 177 (308)
+++ ........ . +.+ ++ ..+|+.|+.+||++. +.|++++++.+.+.+.++++++++.|.+. .++|+...+
T Consensus 84 ~~~~~~~~~~~~-~-~~~~l~-~~~g~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~~----~~~d~~~~~ 155 (415)
T 2zwu_A 84 SECPFIPREAGE-A-YDFIPT-SMDPPEQRQFRALAN-QVVGMPVVDKLENRIQELACSLIESLRPQ----GQCNFTEDY 155 (415)
T ss_dssp TTSCSSSHHHHH-H-CCCTTT-TCCTTTTHHHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHHHHGGG----TEEEHHHHT
T ss_pred CCcccCCCCccc-c-ccccCc-cCCCcHHHHHHHHHH-hhhCHHHHHHHHHHHHHHHHHHHHHHHhc----CCccHHHHH
Confidence 887 22211111 1 223 43 457999999999996 89999999999999999999999998762 379999866
Q ss_pred -HHHHHHHHHHHHhcCcccCCchhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHH
Q 040102 178 -IRLTNNVVSRMTMGQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKE 256 (308)
Q Consensus 178 -~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~ 256 (308)
..+++++|+.+ ||.+.+ ..+++.+..+.+. .. ..|. +..+..+.+.+++.++|++
T Consensus 156 ~~~~~~~vi~~~-~G~~~~----~~~~~~~~~~~~~---~~-----~~P~-----------~~~~~~~~~~~~~~~~i~~ 211 (415)
T 2zwu_A 156 AEPFPIRIFMLL-AGLPEE----DIPHLKYLTDQMT---RP-----DGSM-----------TFAEAKEALYDYLIPIIEQ 211 (415)
T ss_dssp TTHHHHHHHHHH-HTCCGG----GHHHHHHHHHHHH---SC-----CSSS-----------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHH----HHHHHHHHHHHHH---hc-----cCHH-----------HHHHHHHHHHHHHHHHHHH
Confidence 78999999998 999873 2334544444322 11 0121 3445667788888888888
Q ss_pred HHHHhhhhhccCCCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 257 HQEARKINKETGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
++++ ...|+++.|++...+ +..+|+++|.+++.++++|
T Consensus 212 r~~~-----------~~~dll~~ll~~~~~---~~~l~~~~i~~~~~~l~~A 249 (415)
T 2zwu_A 212 RRQK-----------PGTDAISIVANGQVN---GRPITSDEAKRMCGLLLVG 249 (415)
T ss_dssp HHHS-----------CCSSHHHHHHTCEET---TEECCHHHHHHHHHHHHHH
T ss_pred HHhC-----------CCCCHHHHHHHhhhc---CCCCCHHHHHHHHHHHHHH
Confidence 7532 346999999987543 2269999999999999875
No 34
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding, oxidoreductase-antibiotic complex; HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB: 3e5j_A* 3e5k_A* 3e5l_A*
Probab=99.89 E-value=1.4e-21 Score=178.83 Aligned_cols=224 Identities=11% Similarity=0.140 Sum_probs=163.6
Q ss_pred CCCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEec-CCcCEEEecCHHHHHHHHHhcccccccCCc--c-cc---cc
Q 040102 36 PSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFL-GSVPCIVACSPETAKEILKTHETSFCDRPI--S-AA---VD 108 (308)
Q Consensus 36 PgP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~-g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~--~-~~---~~ 108 (308)
|.++.+|+- ..+..+++..+.+| ++||||+++++ |++++++++||+++++||.++ .|++++. . .. ..
T Consensus 6 ~~~p~~~~~---~~~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~ 79 (403)
T 3aba_A 6 ADAPTVPKA---RSCPFLPPDGIADI-RAAAPVTRATFTSGHEAWLVTGYEEVRALLRDS--SFSVQVPHALHTQDGVVT 79 (403)
T ss_dssp -CCCBCCCC---CSSTTSCCTTHHHH-HHHCSEEEEECTTSCEEEEECCHHHHHHHHHCT--TEESCCSCCTTSSSCCCC
T ss_pred CCcccCCCC---cccccChhHHHHHH-HhcCCeeeeccCCCceEEEEcCHHHHHHHHcCC--Cccccccccccccccccc
Confidence 444445553 33456788899999 89999999997 899999999999999999874 4777752 1 11 11
Q ss_pred ccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHH-HHHHHHHHH
Q 040102 109 YLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELI-RLTNNVVSR 187 (308)
Q Consensus 109 ~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~-~~t~~vi~~ 187 (308)
... .+.++ +..+|+.|+++||++. +.|++++++.+.+.+.++++++++.|.+ . ++++|+...+. .+++++|+.
T Consensus 80 ~~~-~~~~l-~~~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~--~-~~~~d~~~~~~~~~~~~vi~~ 153 (403)
T 3aba_A 80 QKP-GRGSL-LWQDEPEHTSDRKLLA-KEFTVRRMQALRPNIQRIVDEHLDAIEA--R-GGPVDLVKTFANAVPSMVISD 153 (403)
T ss_dssp CCC-CTTCC-TTCCTTHHHHHHHHHH-HHSCHHHHHTTHHHHHHHHHHHHHHHHH--H-CSCEEHHHHTTTHHHHHHHHH
T ss_pred ccc-ccccc-ccCCchhHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHHHHHHHh--c-CCCccHHHHHHHHHHHHHHHH
Confidence 111 12344 4568999999999996 7899999999999999999999999985 1 56899987764 799999997
Q ss_pred HHhcCcccCCchhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 040102 188 MTMGQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKET 267 (308)
Q Consensus 188 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~ 267 (308)
+||.+.+ ..+.+....+.+ ... .. . + ++..++.+.+.+++.++|+++++.
T Consensus 154 -~~G~~~~----~~~~~~~~~~~~----~~~----~~-------~-p--~~~~~~~~~~~~~~~~~i~~r~~~------- 203 (403)
T 3aba_A 154 -LFGVPVE----RRAEFQDIAEAM----MRV----DQ-------D-A--AATEAAGMRLGGLLYQLVQERRAN------- 203 (403)
T ss_dssp -HHTCCGG----GHHHHHHHHHHH----SBS----SS-------C-H--HHHHHHHHHHHHHHHHHHHHHHHS-------
T ss_pred -HcCCCHH----HHHHHHHHHHHH----Hhc----cC-------c-H--HHHHHHHHHHHHHHHHHHHHHHhC-------
Confidence 7998763 223343333321 110 00 1 1 455667778888888888877532
Q ss_pred CCCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 268 GKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 268 ~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
...|+++.|++..++ +..+|+++|.+++.++++|
T Consensus 204 ----~~~dll~~ll~~~~~---~~~l~~~ei~~~~~~l~~A 237 (403)
T 3aba_A 204 ----PGDDLISALITTEDP---DGVVDDMFLMNAAGTLLIA 237 (403)
T ss_dssp ----CCSSHHHHHHTSCCT---TCCCSHHHHHHHHHHHHHH
T ss_pred ----CCCCHHHHHHhhccC---CCCCCHHHHHHHHHHHHHH
Confidence 245999999988642 2369999999999999875
No 35
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2, anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A {Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A* 2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Probab=99.89 E-value=3e-22 Score=183.48 Aligned_cols=228 Identities=10% Similarity=0.104 Sum_probs=166.0
Q ss_pred CCCCCCCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEec-CCcC-EEEecCHHHHHHHHHhcccccccCCcccccc-
Q 040102 32 SSLPPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFL-GSVP-CIVACSPETAKEILKTHETSFCDRPISAAVD- 108 (308)
Q Consensus 32 ~~~pPgP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~-g~~~-~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~~- 108 (308)
.+.+|||+++|+.++. ..+|+..+.++. +|||++++++ |+.+ +++++||+++++||.+ ..|++++......
T Consensus 7 ~~~~~~~~~~p~~~~~---~~~p~~~~~~l~-~~Gpv~~~~~~~g~~p~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~ 80 (406)
T 1s1f_A 7 SQAVPPVRDWPAVDLP---GSDFDPVLTELM-REGPVTRISLPNGEGWAWLVTRHDDVRLVTND--PRFGREAVMDRQVT 80 (406)
T ss_dssp -CCSCCEEECCCCCCC---TTCCCHHHHHHH-HHCSEEEEECSBSBSCEEEECSHHHHHHHHTC--TTEESTTTTTTTBC
T ss_pred hhhccCCCCCCCCccc---ccCchHHHHHHH-hcCCeeeeccCCCcccEEEEcCHHHHHHHHcC--CCccCCcCCCCCcc
Confidence 4678999999998883 467899999985 7999999996 6666 9999999999999976 4688876432111
Q ss_pred ---c-cccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHH-HHHHH
Q 040102 109 ---Y-LTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELI-RLTNN 183 (308)
Q Consensus 109 ---~-~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~-~~t~~ 183 (308)
. ....+.+++ ..+|+.|+.+||++. +.|++++++.+.+.+.++++++++.|.+ . ++++|+...+. .++++
T Consensus 81 ~~~~~~~~~~~~l~-~~dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~--~-~~~~d~~~~~~~~~~~~ 155 (406)
T 1s1f_A 81 RLAPHFIPARGAVG-FLDPPDHTRLRRSVA-AAFTARGVERVRERSRGMLDELVDAMLR--A-GPPADLTEAVLSPFPIA 155 (406)
T ss_dssp BSSSSCSSCTTSGG-GCCTTHHHHHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHHHHHH--H-CSSEEHHHHTTTHHHHH
T ss_pred cccccccccccccc-cCCchHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHh--c-CCCccHHHHHhhHhHHH
Confidence 1 111123444 457999999999996 7899999999999999999999999984 1 45899987774 79999
Q ss_pred HHHHHHhcCcccCCchhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040102 184 VVSRMTMGQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKI 263 (308)
Q Consensus 184 vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 263 (308)
+|+. +||.+.+ ..+.+....+.+..... | . ++..+..+.+.+++.++|+++++
T Consensus 156 vi~~-~~G~~~~----~~~~~~~~~~~~~~~~~--------~------~----~~~~~~~~~~~~~~~~~i~~r~~---- 208 (406)
T 1s1f_A 156 VICE-LMGVPAT----DRHSMHTWTQLILSSSH--------G------A----EVSERAKNEMNAYFSDLIGLRSD---- 208 (406)
T ss_dssp HHHH-HHTCCGG----GHHHHHHHHHHHHHHHT--------T------C----CCCHHHHTHHHHHHHHHHHTSCC----
T ss_pred HHHH-HhCCCHH----HHHHHHHHHHHHHhccC--------C------H----HHHHHHHHHHHHHHHHHHHHHHh----
Confidence 9998 6998873 22345444444332211 1 0 12234556667777777765431
Q ss_pred hhccCCCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 264 NKETGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 264 ~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
....|+++.|++..++ ..+|+++|.+++.++++|
T Consensus 209 -------~~~~d~l~~ll~~~~~----~~ls~~el~~~~~~l~~A 242 (406)
T 1s1f_A 209 -------SAGEDVTSLLGAAVGR----DEITLSEAVGLAVLLQIG 242 (406)
T ss_dssp -------SCCCSHHHHHHHHHHT----TSSCHHHHHHHHHHHHHH
T ss_pred -------CCCCCHHHHHHHhhcc----cCCCHHHHHHHHHHHHHh
Confidence 1346999999987543 269999999999999875
No 36
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes teichomyceticus} SCOP: a.104.1.0 PDB: 3o1a_A*
Probab=99.89 E-value=1.7e-21 Score=177.00 Aligned_cols=212 Identities=9% Similarity=0.098 Sum_probs=161.6
Q ss_pred CCCchHHHHHHHHhcCCeeEEecCC----cCEEEecCHHHHHHHHHhcccccccCCccccccccccCCcceEeccCChhh
Q 040102 51 APIPHQALHKLSIRYGPLIHLFLGS----VPCIVACSPETAKEILKTHETSFCDRPISAAVDYLTYGSADFSFAPYGPYW 126 (308)
Q Consensus 51 ~~~~~~~~~~~~~~yG~i~~~~~g~----~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~W 126 (308)
..+|+..+.+| ++||||+++++|+ +++++++||+++++|| ++...|++|+........... .+.++..+|+.|
T Consensus 11 ~~~p~~~~~~l-r~yGpv~~~~~~~~~~g~~~vvv~~~~~v~~vl-~~~~~f~~~~~~~~~~~~~~~-~~~~~~~~g~~~ 87 (384)
T 3oo3_A 11 RLDPVPEFEEL-QKAGPLHEYDTEPGMDGRKQWLVTGHDEVRAIL-ADHERFSSMRPVDDEADRALL-PGILQAYDPPDH 87 (384)
T ss_dssp TTEECHHHHHH-HHTCSEECCCCC------CEEEECCHHHHHHHH-HCTTTEECSCCCC-----CCC-TTCGGGCCTTHH
T ss_pred ccChhHHHHHH-HhcCCeeecccccccCCCCEEEEcCHHHHHHHH-hCchhccCCcccccccccccc-ccccccCCChhH
Confidence 57889999999 5899999999987 9999999999999999 666889998864432221111 234556689999
Q ss_pred hhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHhcCcccCCchhHHHHHH
Q 040102 127 KFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMGQICSINDKEADEVRK 206 (308)
Q Consensus 127 k~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~~~~~~~~~~~~~~~ 206 (308)
+.+||++. +.|++++++.+.+.+.++++++++.|.+ .++++|+...+...+.++++..+||.+.+ ..+++.+
T Consensus 88 ~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~~~~~d~~~~~~~~~~~~v~~~~~G~~~~----~~~~~~~ 159 (384)
T 3oo3_A 88 TRLRRTVA-PAYSARRMERLRPRIEEIVEECLDDFES---VGAPVDFVRHAAWPIPAYIACEFLGVPRD----DQAELSR 159 (384)
T ss_dssp HHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHHHHH---SCSSEEHHHHTTTHHHHHHHHHHHTCCGG----GHHHHHH
T ss_pred HHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCccHHHHHHHHHHHHHHHHHcCCCHH----HHHHHHH
Confidence 99999995 8999999999999999999999999976 26689999999998888888889998873 2344555
Q ss_pred HHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCHHHHHhhcccc
Q 040102 207 LVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPMDLLDMLLDISED 286 (308)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~ 286 (308)
.++.+.. .+..++..+..+.+.+++.++|+++++. ...|+++.|++. ++
T Consensus 160 ~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------~~~d~l~~ll~~-~~ 208 (384)
T 3oo3_A 160 MIRESRE-------------------SRLPRQRTLSGLGIVNYTKRLTSGKRRD-----------PGDGMIGVIVRE-HG 208 (384)
T ss_dssp HHHHHHH-------------------CSCHHHHHHHHHHHHHHHHHHHHHHHHS-----------CCSSHHHHHHHH-HG
T ss_pred HHHHHhc-------------------cCChHHHHHHHHHHHHHHHHHHHHHHhC-----------CCCCHHHHHHHh-cC
Confidence 4444322 0113455667788888888888876531 346999999987 21
Q ss_pred ccccCCCCHHHHHHHHHHHhcC
Q 040102 287 ESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 287 ~~~~~~lt~~~i~~~~~~l~~A 308 (308)
..+|+++|.+++.++++|
T Consensus 209 ----~~l~~~~l~~~~~~~~~A 226 (384)
T 3oo3_A 209 ----AEISDEELAGLAEGNLIM 226 (384)
T ss_dssp ----GGSCHHHHHHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHHHHHh
Confidence 269999999999999875
No 37
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron, metal-binding, oxidoreductase; HET: HEM; 1.35A {Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A* 3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Probab=99.88 E-value=5.9e-22 Score=182.99 Aligned_cols=236 Identities=11% Similarity=0.087 Sum_probs=164.8
Q ss_pred CCCCCCCCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEe--------cCCcCEEEecCHHHHHHHHHhcccccccCC
Q 040102 31 TSSLPPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLF--------LGSVPCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 31 ~~~~pPgP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~--------~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
+...||+|.++++.+....-..+|+..+.++ ++||||+++. +|+.++++|+|+++|++||. +...|++++
T Consensus 16 ~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~l-r~~gPv~~~~~~~g~~~~lG~~~~~vv~~~~~v~~vl~-~~~~fs~~~ 93 (433)
T 3ivy_A 16 TVPSPNLPPGFDFTDPAIYAERLPVAEFAEL-RSAAPIWWNGQDPGKGGGFHDGGFWAITKLNDVKEISR-HSDVFSSYE 93 (433)
T ss_dssp ----CCCCTTCCTTCHHHHTTCCCHHHHHHH-HHHCSEEEEECCTTCSTTCCSSEEEEECSHHHHHHHHH-CTTTEESTT
T ss_pred ccCCCCCCCCCCCCCHHHhhcCCccHHHHHH-HhcCCEEecccccccccccCCCCEEEEecHHHHHHHHc-ChhhccCCc
Confidence 4466788888887766543345689999999 7799999999 67789999999999999995 457798887
Q ss_pred cccccc--------ccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehH
Q 040102 103 ISAAVD--------YLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVG 174 (308)
Q Consensus 103 ~~~~~~--------~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~ 174 (308)
...... .....+.++ +..+|+.|+.+||++. +.|++++++.+.+.+.++++.+++.|.+ +.++|+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~l-~~~dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~----~~~~d~~ 167 (433)
T 3ivy_A 94 NGVIPRFKNDIAREDIEVQRFVM-LNMDAPHHTRLRKIIS-RGFTPRAVGRLHDELQERAQKIAAEAAA----AGSGDFV 167 (433)
T ss_dssp TCSCCCCCTTCCHHHHHGGGGSG-GGCCTTHHHHHHHHHG-GGSCHHHHHTTHHHHHHHHHHHHHHHHH----HCEEEHH
T ss_pred ccccccccccccccccccccCCc-cccChHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHhh----CCCeeHH
Confidence 543322 111112233 4568999999999995 8999999999999999999999999875 3479999
Q ss_pred HHH-HHHHHHHHHHHHhcCcccCCchhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHH
Q 040102 175 KEL-IRLTNNVVSRMTMGQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERI 253 (308)
Q Consensus 175 ~~~-~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~i 253 (308)
..+ ..+++++|+++ ||.+.+ +.+.+.+..+. . +....|.... .+..+..+.+.+++.++
T Consensus 168 ~~~~~~~~~~vi~~l-~G~~~~----~~~~~~~~~~~----~----~~~~~p~~~~-------~~~~~~~~~~~~~~~~~ 227 (433)
T 3ivy_A 168 EQVSCELPLQAIAGL-LGVPQE----DRGKLFHWSNE----M----TGNEDPEYAH-------IDPKASSAELIGYAMKM 227 (433)
T ss_dssp HHTTSHHHHHHHHHH-HTCCHH----HHHHHHHHHTT----C----SCCCCGGGTT-------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-cCCCHH----HHHHHHHHHHH----H----hccCCchhhh-------HHHHHHHHHHHHHHHHH
Confidence 888 99999999996 996541 12223222111 1 1112232111 13455677788888888
Q ss_pred HHHHHHHhhhhhccCCCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 254 LKEHQEARKINKETGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 254 i~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
|++++++ ...|+++.|++...++ ..+|+++|.+++.++++|
T Consensus 228 i~~r~~~-----------~~~dll~~ll~~~~~~---~~ls~~ei~~~~~~ll~A 268 (433)
T 3ivy_A 228 AEEKAKN-----------PADDIVTQLIQADIDG---EKLSDDEFGFFVVMLAVA 268 (433)
T ss_dssp HHHC------------------CHHHHHSCC--C---CCCCHHHHHHHHHHHHHH
T ss_pred HHHHhcC-----------CCCcHHHHHHhhhcCC---CCCCHHHHHHHHHHHHHh
Confidence 8776532 3459999999886532 369999999999999875
No 38
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding; HET: HEM; 2.30A {Streptomyces avermitilis}
Probab=99.88 E-value=5.6e-22 Score=181.73 Aligned_cols=215 Identities=13% Similarity=0.124 Sum_probs=155.6
Q ss_pred ccCCCCchHHHHHHHHhcCCeeEEec-CCcCEEEecCHHHHHHHHHhcccccccCCccccccc---ccc----CCcceEe
Q 040102 48 HLLAPIPHQALHKLSIRYGPLIHLFL-GSVPCIVACSPETAKEILKTHETSFCDRPISAAVDY---LTY----GSADFSF 119 (308)
Q Consensus 48 ~~l~~~~~~~~~~~~~~yG~i~~~~~-g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~~~---~~~----~~~~~~~ 119 (308)
..+..+++..+.+| ++||||+++++ |+.++++++||+++++||.++. |++++....... +.. ..+++ +
T Consensus 20 ~~~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ 95 (408)
T 3abb_A 20 RTCPYQPPKAYEER-RGESPLTQVTLFDGRPAWLITGHAEGRALLVDPR--LSSDWGHPDFPVVVRRTEDRGGLAFPL-I 95 (408)
T ss_dssp CSSTTSCCHHHHHH-CCSSSEEEEECTTSCEEEEECCHHHHHHHHTCTT--EECCTTSTTCCCCC---------CCTT-T
T ss_pred cccccCchHHHHHH-HhcCCeeeeecCCCCcEEEEeCHHHHHHHHcCCC--cccccccccccccccCCcccccccccc-c
Confidence 34557889999999 89999999998 8999999999999999998653 555543111110 110 11233 4
Q ss_pred ccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHH-HHHHHHHHHHHhcCcccCCc
Q 040102 120 APYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELI-RLTNNVVSRMTMGQICSIND 198 (308)
Q Consensus 120 ~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~-~~t~~vi~~~~fG~~~~~~~ 198 (308)
..+|+.|+.+||++. +.|++++++.+.+.+.++++++++.|.+ .+.++|+...+. .+++++|+. +||.+.+
T Consensus 96 ~~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~g~~~d~~~~~~~~~~~~vi~~-~~G~~~~--- 167 (408)
T 3abb_A 96 GVDDPVHARQRRMLI-PSFGVKRMNAIRPRLQSLVDRLLDDMLA---KGPGADLVSAFALPVPSVAICE-LLGVPYG--- 167 (408)
T ss_dssp TCCTTHHHHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHHHHH---TCSCEEHHHHTTTHHHHHHHHH-HHTCCGG---
T ss_pred cCCchHHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCeehHHHHHHHHHHHHHHH-HhCCCHH---
Confidence 468999999999996 8999999999999999999999999975 256899999886 599999997 7998763
Q ss_pred hhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCHHH
Q 040102 199 KEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPMDLLD 278 (308)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~d~l~ 278 (308)
..+.+.+..+.+... ..| ++..+..+.+.+++.++|++++++ ...|+++
T Consensus 168 -~~~~~~~~~~~~~~~--------~~~-----------~~~~~~~~~~~~~~~~~i~~r~~~-----------~~~d~l~ 216 (408)
T 3abb_A 168 -DHDFFEECSRNFVGA--------ATS-----------AEADAAFGELYTYLHGLVGRKQAE-----------PEDGLLD 216 (408)
T ss_dssp -GHHHHHHHHHHHC-------------------------CCSSHHHHHHHHHHHHHHHHHHS-----------CCSSHHH
T ss_pred -HHHHHHHHHHHHhcc--------cch-----------HHHHHHHHHHHHHHHHHHHHHHhC-----------CCCCHHH
Confidence 233444443332110 001 122334566777888888877532 2369999
Q ss_pred HHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 279 MLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 279 ~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
.|++..++ +..+|+++|.+++.++++|
T Consensus 217 ~ll~~~~~---~~~ls~~ei~~~~~~l~~A 243 (408)
T 3abb_A 217 ELIARQLE---EGDLDHDEVVMIALVLLVA 243 (408)
T ss_dssp HHHHHHHT---SSSCCHHHHHHHHHHHHHH
T ss_pred HHHhcccC---CCCCCHHHHHHHHHHHHHH
Confidence 99987543 2369999999999999875
No 39
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Probab=99.88 E-value=2.2e-23 Score=189.88 Aligned_cols=148 Identities=19% Similarity=0.171 Sum_probs=125.4
Q ss_pred CCCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCC-ccccccccccCC
Q 040102 36 PSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRP-ISAAVDYLTYGS 114 (308)
Q Consensus 36 PgP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp-~~~~~~~~~~~~ 114 (308)
|+++.+|++||++++..+++..+.+|.++|||+++ ++|++++++++||+++++++.++ .|++++ .......+. +
T Consensus 2 ~~~~~~p~iGnl~~~~~~p~~~~~~l~~~yGpv~~-~~g~~~~vvv~~~~~i~~il~~~--~f~~~~~~~~~~~~~~-g- 76 (389)
T 1n97_A 2 KRLSLREAWPYLKDLQQDPLAVLLAWGRAHPRLFL-PLPRFPLALIFDPEGVEGALLAE--GTTKATFQYRALSRLT-G- 76 (389)
T ss_dssp EECCHHHHHHHHHHHHHCHHHHHHHHHHHCSEEEE-CCTTCCEEEECSHHHHHHHHHCT--TEECCSHHHHHHHHHH-C-
T ss_pred cccccccccccHHHHhhChHHHHHHHHHHcCCeeE-ecCCccEEEECCHHHHHHHHhcC--CCCCChhHHHHHHHHh-C-
Confidence 46678999999998866688999999999999999 99999999999999999999876 788876 221222222 2
Q ss_pred cceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHhcCcc
Q 040102 115 ADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMGQIC 194 (308)
Q Consensus 115 ~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~~~ 194 (308)
.+++ ..+|+.|+.+||++. +.|++++++.+.+.+.++++++++.|. ++++|+.+.+.++++++|++++||.++
T Consensus 77 ~~l~-~~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~-----~~~~dl~~~~~~~~~~vi~~~~fG~~~ 149 (389)
T 1n97_A 77 RGLL-TDWGESWKEARKALK-DPFLPKNVRGYREAMEEEARAFFGEWR-----GEERDLDHEMLALSLRLLGRALFGKPL 149 (389)
T ss_dssp SSTT-TCCHHHHHHHHHHHC-GGGSHHHHHTTHHHHHHHHHHHHHTCC-----SCCEEHHHHHHHHHHHHHHHHHHSSCC
T ss_pred Cccc-cCCcHHHHHHHHHhC-cccCHHHHHHHHHHHHHHHHHHHHHcc-----CCcCcHHHHHHHHHHHHHHHHHcCCcc
Confidence 3444 457999999999995 899999999999999999999998875 457999999999999999999999988
Q ss_pred c
Q 040102 195 S 195 (308)
Q Consensus 195 ~ 195 (308)
+
T Consensus 150 ~ 150 (389)
T 1n97_A 150 S 150 (389)
T ss_dssp C
T ss_pred h
Confidence 3
No 40
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET: HEM; 2.90A {Streptomyces coelicolor} PDB: 4fxb_A*
Probab=99.88 E-value=2.1e-21 Score=178.38 Aligned_cols=214 Identities=12% Similarity=0.097 Sum_probs=160.3
Q ss_pred CCCCchHHHHHHHHhcCCeeEEecC-CcCEEEecCHHHHHHHHHhcccccccCCccccccccc-------cCCcceEecc
Q 040102 50 LAPIPHQALHKLSIRYGPLIHLFLG-SVPCIVACSPETAKEILKTHETSFCDRPISAAVDYLT-------YGSADFSFAP 121 (308)
Q Consensus 50 l~~~~~~~~~~~~~~yG~i~~~~~g-~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~~~~~-------~~~~~~~~~~ 121 (308)
+..+|+..+.+|.++ |||+++++| +.+++||+||++|++||.++ .|++++......... ..+.+ ++..
T Consensus 27 ~~~dp~~~~~~l~~~-Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~ 102 (417)
T 3tyw_A 27 CPFAAPAEYAALRTD-DPVARVTLPTRREAWVVTRYDDVRELLSDP--RVSADIRRPGFPALGEGEQEAGARFRP-FIRT 102 (417)
T ss_dssp STTSCCTHHHHHHHT-CTEEEEECTTSCEEEEECCHHHHHHHHHCT--TEECCSSSTTCCCSSTTTSTTSSSCCC-GGGC
T ss_pred cccCchHHHHHHHhh-CCeeeeecCCCCCeEEEcCHHHHHHHHcCC--CcccCCccccccccccccccccccccc-hhhc
Confidence 457889999999987 999999997 59999999999999999876 788865322111111 11223 4556
Q ss_pred CChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHH-HHHHHHHHHHHHhcCcccCCchh
Q 040102 122 YGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQICSINDKE 200 (308)
Q Consensus 122 ~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~ 200 (308)
+|+.|+.+||++. +.|++++++.+.+.+.++++++++.|.+ .++++|+...+ ..+++++|+.+ ||.+.+.
T Consensus 103 dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~g~~~d~~~~~~~~~~~~vi~~~-~G~~~~~---- 173 (417)
T 3tyw_A 103 DAPEHTRYRRMLL-PAFTVRRVRAMRPAVQARVDEILDGMLA---AGGPVDLVSAYANAVSTSVICEL-LGIPRHD---- 173 (417)
T ss_dssp CHHHHHHHHHHHG-GGGCHHHHHHTHHHHHHHHHHHHHHHHH---HCSSEEHHHHTHHHHHHHHHHHH-HTCCTTT----
T ss_pred CCcHHHHHHHHHH-hhhCHHHHHHHHHHHHHHHHHHHHHHHh---hCCCcchHHHHHHHHHHHHHHHH-hCCCHHH----
Confidence 8999999999996 8999999999999999999999999986 25689999988 58999999987 9998742
Q ss_pred HHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCHHHHH
Q 040102 201 ADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPMDLLDML 280 (308)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~d~l~~l 280 (308)
.+.+......+. .. .+ ..++..+..+.+.+++.++|+++++ +...|+++.|
T Consensus 174 ~~~~~~~~~~~~---~~------~~---------~~~~~~~~~~~l~~~~~~~i~~r~~-----------~~~~d~l~~l 224 (417)
T 3tyw_A 174 LEFFRDVTRISG---SR------NS---------TAEQVSEALGGLFGLLGGLVAERRE-----------EPRDDLISKL 224 (417)
T ss_dssp TTHHHHHHHHHH---SS------SS---------CTTHHHHHHHHHHHHHHHHHHHHHS-----------SCCSSHHHHH
T ss_pred HHHHHHHHHHHh---cc------cC---------CHHHHHHHHHHHHHHHHHHHHHHhh-----------CCCCCHHHHH
Confidence 123333322211 10 00 1234566777888888888877652 1356999999
Q ss_pred hhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 281 LDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 281 l~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
++...++ ..+++++|.+++.++++|
T Consensus 225 l~~~~~~---~~ls~~el~~~~~~l~~A 249 (417)
T 3tyw_A 225 VTDHLVP---GNVTTEQLLSTLGITINA 249 (417)
T ss_dssp HHHTTTT---TSSCHHHHHHHHHHHHHH
T ss_pred HHhcccC---CCCCHHHHHHHHHHHHhh
Confidence 9886543 269999999999998875
No 41
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans}
Probab=99.88 E-value=2.9e-21 Score=179.24 Aligned_cols=226 Identities=12% Similarity=0.063 Sum_probs=161.3
Q ss_pred chHHHHHHHHhcCCee--EEe-cCCcCEEEecCHHHHHHHHHhcccccccCCcccccccccc---------C---CcceE
Q 040102 54 PHQALHKLSIRYGPLI--HLF-LGSVPCIVACSPETAKEILKTHETSFCDRPISAAVDYLTY---------G---SADFS 118 (308)
Q Consensus 54 ~~~~~~~~~~~yG~i~--~~~-~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~~~~~~---------~---~~~~~ 118 (308)
|+..+.++ ++||||+ +++ +|+.+++||+++++|++||.+. ..|++||.......... + ....+
T Consensus 47 p~~~~~~l-r~~gPV~~~~~~~~g~~~~~vvt~~~~v~~vl~~~-~~fs~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~l 124 (450)
T 3tkt_A 47 LLDRFDAL-RAEAPVAKVVAPDDEHEPFWLVSSFDGVMKASKDN-ATFLNNPKSTVFTLRVGEMMAKAITGGSPHLVESL 124 (450)
T ss_dssp HHHHHHHH-HHHCSEEEECCTTCSSCCEEEECSHHHHHHHHHCT-TTEESSSSCSSCCCHHHHHHHHHHHTSCSCSSCCG
T ss_pred chHHHHHH-HhcCCeecccccCCCCCCEEEEecHHHHHHHHhCc-ccccCCCccccccccccccccccccccccccccCc
Confidence 77888888 5799999 998 8999999999999999999654 88999886443221110 0 11234
Q ss_pred eccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHH-HHHHHHHHHHHHhcCcccCC
Q 040102 119 FAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQICSIN 197 (308)
Q Consensus 119 ~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~ 197 (308)
+..+|+.|+++||+++ +.|++++++.+.+.+.++++++++.|.+. +.++|+...+ ..+++++|+++ ||.+.+
T Consensus 125 ~~~dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~---~~~~dl~~~~~~~~~~~vi~~l-~G~~~~-- 197 (450)
T 3tkt_A 125 VQMDAPKHPKLRRLTQ-DWFMPKNLARLDGEIRKIANEAIDRMLGA---GEEGDFMALVAAPYPLHVVMQI-LGVPPE-- 197 (450)
T ss_dssp GGCCTTHHHHHHHHHH-TTTSHHHHGGGHHHHHHHHHHHHHHHHHT---CSEEEHHHHTTTHHHHHHHHHH-TTCCGG--
T ss_pred ccCCCHHHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHHHhc---CCCEeeHHHHHHHHHHHHHHHH-cCCChh--
Confidence 5568999999999986 89999999999999999999999999862 5689998888 69999999985 997652
Q ss_pred chhHHHHHHHHHHHHHHhCCCCccccccccccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCH
Q 040102 198 DKEADEVRKLVQETAELTGKFNLQDYIWFCKNI-DLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPMDL 276 (308)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~-~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~d~ 276 (308)
+...+.+..+.+. ......++|+..++ ...+..++..+..+.+.+++.++|++++++ ...|+
T Consensus 198 --~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~-----------~~~dl 260 (450)
T 3tkt_A 198 --DEPKMLFLTQQMF----GGQDEDMNKSGLKDLPPEQISQIVAGAVAEFERYFAGLAAERRRN-----------PTDDV 260 (450)
T ss_dssp --GHHHHHHHHHTTS----CCC----------------HHHHHHHHHHHHHHHHHHHHHHHHHS-----------CCSSH
T ss_pred --HHHHHHHHHHHHh----ccccchhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhC-----------CCCCH
Confidence 2334444333321 11112223333221 112334667777888888999988887532 34699
Q ss_pred HHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 277 LDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 277 l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
++.|++...++ ..+|+++|.+++.++++|
T Consensus 261 l~~ll~~~~~~---~~ls~~ei~~~~~~l~~A 289 (450)
T 3tkt_A 261 ATVIANAVVDG---EPMSDRDTAGYYIITASA 289 (450)
T ss_dssp HHHHHTCEETT---EECCHHHHHHHHHHHHHH
T ss_pred HHHHHhccccC---CCCCHHHHHHHHHHHHHH
Confidence 99999886532 369999999999999875
No 42
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase, metal-binding, AN biosynthesis, TIE-ROD mechanism of action; HET: HEM; 1.59A {Saccharopolyspora erythraea} PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Probab=99.87 E-value=1.4e-21 Score=179.24 Aligned_cols=231 Identities=13% Similarity=0.133 Sum_probs=160.8
Q ss_pred HHhhccCCCCCCCCCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCc
Q 040102 24 IFRRSKTTSSLPPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPI 103 (308)
Q Consensus 24 ~~~~~~~~~~~pPgP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~ 103 (308)
+|++..+..+.+|||+. ..+++..+.+|.+ |||| |+|+.+.++++||++++++|.++ ..|++|+.
T Consensus 10 iyr~~~~pl~~~PGp~~----------~~~p~~~~~~l~~-~gpv---~~~~~~~~vv~~~~~v~~vl~~~-~~f~~~~~ 74 (411)
T 2jjn_A 10 CARRTLTTIDEVPGMAD----------ETALLDWLGTMRE-KQPV---WQDRYGVWHVFRHADVQTVLRDT-ATFSSDPT 74 (411)
T ss_dssp -------CCCSCCCSSC----------HHHHHHHHHHHHH-HCSE---EECTTSCEEECSHHHHHHHHHCT-TTEESCGG
T ss_pred hhhcccCCCCCCCCccc----------ccChHHHHHHHHH-hCCc---ccCCCCeEEECCHHHHHHHHcCc-ccccCccc
Confidence 33334445555778772 2467889999986 9998 78888999999999999999865 57988874
Q ss_pred cccccccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHH-HHHHH
Q 040102 104 SAAVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKEL-IRLTN 182 (308)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~ 182 (308)
... ......+.++ +..+|+.|+.+||++. +.|++++++.+.+.+.++++++++. . ++++|+...+ ..+++
T Consensus 75 ~~~-~~~~~~~~~~-~~~~g~~~~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~--~----~~~~d~~~~~~~~~~~ 145 (411)
T 2jjn_A 75 RVI-EGASPTPGMI-HEIDPPEHRALRKVVS-SAFTPRTISDLEPRIRDVTRSLLAD--A----GESFDLVDVLAFPLPV 145 (411)
T ss_dssp GGS-TTCCCCTTCG-GGCCTTHHHHHHHHHH-HHSCHHHHHTTHHHHHHHHHHHHHT--S----CSEEEHHHHTTTHHHH
T ss_pred ccC-Cccccccccc-ccCCchHHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHhc--C----CCceeHHHHHHHHHHH
Confidence 322 2211122334 4557999999999996 8999999999999999999999887 2 4589998555 68999
Q ss_pred HHHHHHHhcCcccCCchhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040102 183 NVVSRMTMGQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARK 262 (308)
Q Consensus 183 ~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 262 (308)
++|+.+ ||.+.+.. +++.+..+.+..... |. +. +++..++..+..+.+.+++.++|+++++.
T Consensus 146 ~vi~~~-fG~~~~~~----~~~~~~~~~~~~~~~--------~~--~~-~p~~~~~~~~~~~~~~~~~~~~i~~r~~~-- 207 (411)
T 2jjn_A 146 TIVAEL-LGLPPMDH----EQFGDWSGALVDIQM--------DD--PT-DPALAERIADVLNPLTAYLKARCAERRAD-- 207 (411)
T ss_dssp HHHHHH-HTCCSCCC----STTCCHHHHHHHSCC--------SC--TT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHH-cCCCHHHH----HHHHHHHHHHHhccC--------cc--cc-chHHHHHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 999998 99987431 122223333222111 11 11 11223456677788888888888877531
Q ss_pred hhhccCCCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 263 INKETGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 263 ~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
...|+++.|++...+ +..+|+++|.+++.++++|
T Consensus 208 ---------~~~d~l~~ll~~~~~---~~~l~~~el~~~~~~~~~A 241 (411)
T 2jjn_A 208 ---------PGDDLISRLVLAEVD---GRALDDEEAANFSTALLLA 241 (411)
T ss_dssp ---------CCSSHHHHHHHCCBT---TBCCCHHHHHHHHHHHHHH
T ss_pred ---------CCCCHHHHHHhcccC---CCCCCHHHHHHHHHHHHHh
Confidence 346999999987643 2369999999999999875
No 43
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase; HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.87 E-value=1.9e-21 Score=178.22 Aligned_cols=220 Identities=18% Similarity=0.286 Sum_probs=159.4
Q ss_pred cCCCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCc--ccc---cc---cccc--CCcceE
Q 040102 49 LLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPI--SAA---VD---YLTY--GSADFS 118 (308)
Q Consensus 49 ~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~--~~~---~~---~~~~--~~~~~~ 118 (308)
.+..+++..+.+| ++||||+++++|+.++++++||+++++||.++. |++++. ... .. .+.. .++++
T Consensus 12 ~~~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l- 87 (408)
T 1odo_A 12 PTGADHHTEHRTL-REGGPATWVDVLGVQAWSVSDPVLLKQLLTSSD--VSKDARAHWPAFGEVVGTWPLALWVAVENM- 87 (408)
T ss_dssp TTCTTHHHHHHHH-HTTCSEEEEEETTEEEEEECCHHHHHHHTTCTT--EESCHHHHCTTHHHHTTTCTTTHHHHCCSG-
T ss_pred cccCChHHHHHHH-HHhCCeEEeccCCCCEEEECCHHHHHHHHcCCC--cccccccccccccccccccccccccccccc-
Confidence 4557789999999 999999999999999999999999999998653 455542 110 00 0000 12233
Q ss_pred eccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHH-HHHHHHHHHHHhcCcccCC
Q 040102 119 FAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELI-RLTNNVVSRMTMGQICSIN 197 (308)
Q Consensus 119 ~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~-~~t~~vi~~~~fG~~~~~~ 197 (308)
+..+|+.|+++||++. +.|++++++.+.+.+.++++++++.|.+. ..+.++|+...+. .+++++|+. +||.+.+
T Consensus 88 ~~~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-~~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~-- 162 (408)
T 1odo_A 88 FTAYGPNHRKLRRLVA-PAFSARRVDAMRPAVEAMVTGLVDRLAEL-PAGEPVDLRQELAYPLPIAVIGH-LMGVPQD-- 162 (408)
T ss_dssp GGCCHHHHHHHHHTTG-GGGSHHHHHHHHHHHHHHHHHHHHHHHHS-CTTSCEEHHHHTTTHHHHHHHHH-HHTCCHH--
T ss_pred cccCChHHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCcchHHHHhhhhHHHHHHH-HhCCCHH--
Confidence 5568999999999996 89999999999999999999999999863 2256899998887 599999996 7998762
Q ss_pred chhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCHH
Q 040102 198 DKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPMDLL 277 (308)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~d~l 277 (308)
..+++.+..+.+.. . . .. .++..+..+.+.+++.++|++++++ ...|++
T Consensus 163 --~~~~~~~~~~~~~~---~--------~-----~~--~~~~~~~~~~~~~~~~~~i~~r~~~-----------~~~d~l 211 (408)
T 1odo_A 163 --RRDGFRALVDGVFD---T--------T-----LD--QAEAQANTARLYEVLDQLIAAKRAT-----------PGDDMT 211 (408)
T ss_dssp --HHHHHHHHHHHHHC---T--------T-----CC--HHHHHHHHHHHHHHHHHHHHHHHHS-----------CCSSHH
T ss_pred --HHHHHHHHHHHHhc---c--------c-----CC--HHHHHHHHHHHHHHHHHHHHHHhhC-----------CCCCHH
Confidence 22344444433221 0 0 01 1345667778888888888877532 246999
Q ss_pred HHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 278 DMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 278 ~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
+.|++..+++..+..+|+++|.+++.++++|
T Consensus 212 ~~ll~~~~~~~~~~~l~~~ei~~~~~~~~~A 242 (408)
T 1odo_A 212 SLLIAARDDEGDGDRLSPEELRDTLLLMISA 242 (408)
T ss_dssp HHHHHHHCC-----CCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccccCCCCHHHHHHHHHHHHHH
Confidence 9999876431002369999999999999875
No 44
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM EDO; 1.37A {Citrobacter braakii} PDB: 4fmx_A* 4fyz_A* 1t2b_A* 3bdz_A* 3be0_A*
Probab=99.87 E-value=4.3e-21 Score=175.25 Aligned_cols=213 Identities=10% Similarity=0.079 Sum_probs=161.6
Q ss_pred CCCCchHHHHHHHHhc--CCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCccccccccccCCcceEeccCChhhh
Q 040102 50 LAPIPHQALHKLSIRY--GPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAVDYLTYGSADFSFAPYGPYWK 127 (308)
Q Consensus 50 l~~~~~~~~~~~~~~y--G~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk 127 (308)
+..+++..+.+|.++| |||+++++|+ ++++++||+++++|| ++...|++||..........+ ..+++..+|+.|+
T Consensus 17 ~~~~p~~~~~~l~~~Y~~Gpv~~~~~~~-~~~vv~~~~~v~~vl-~~~~~f~~~~~~~~~~~~~~~-~~~~~~~~g~~~~ 93 (398)
T 4fb2_A 17 PDGTPHAFFEALRDEAETTPIGWSEAYG-GHWVVAGYKEIQAVI-QNTKAFSNKGVTFPRYETGEF-ELMMAGQDDPVHK 93 (398)
T ss_dssp TTSSSHHHHHHHHHHHTTCSEEEECGGG-CEEEECSHHHHHHHH-TCCSSEEGGGCSSSCC----C-CCTTTTCCTTHHH
T ss_pred hhcChhHHHHHHHhcCCCCCeEEecCCC-CEEEEccHHHHHHHH-hChhhccCCcccccCCCCccc-ccCcccCCchHHH
Confidence 3467899999999999 9999999996 699999999999999 667789998865432222122 2234556899999
Q ss_pred hhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHH-HHHHHHHHHHHHhcCcccCCchhHHHHHH
Q 040102 128 FMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQICSINDKEADEVRK 206 (308)
Q Consensus 128 ~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~~~~~~ 206 (308)
.+||++. +.|++++++.+.+.+.++++++++.|.+ +.++|+...+ ..+++++|+. +||.+.+ ..+++.+
T Consensus 94 ~~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~----~~~~d~~~~~~~~~~~~vi~~-~~G~~~~----~~~~~~~ 163 (398)
T 4fb2_A 94 KYRQLVA-KPFSPEATDLFTEQLRQSTNDLIDARIE----LGEGDAATWLANEIPARLTAI-LLGLPPE----DGDTYRR 163 (398)
T ss_dssp HHHHHHH-TTTCHHHHHTTHHHHHHHHHHHHHTTTT----TTEEEHCCCCCTTHHHHHHHH-HTTSCGG----GHHHHHH
T ss_pred HHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHhh----cCCccHHHHHHHHHHHHHHHH-HcCCCHH----HHHHHHH
Confidence 9999996 8999999999999999999999988765 3468875554 6899999998 7998762 2344544
Q ss_pred HHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCHHHHHhhcccc
Q 040102 207 LVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPMDLLDMLLDISED 286 (308)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~ 286 (308)
....+.. |. ...+..+..+.+.+++.++|++++++ ...|+++.|++...+
T Consensus 164 ~~~~~~~-----------~~--------~~~~~~~~~~~~~~~~~~~i~~r~~~-----------~~~d~l~~ll~~~~~ 213 (398)
T 4fb2_A 164 WVWAITH-----------VE--------NPEEGAEIFAELVAHARTLIAERRTN-----------PGNDIMSRVIMSKID 213 (398)
T ss_dssp HHHHHHH-----------CC--------CHHHHHHHHHHHHHHHHHHHHHHHHS-----------CCSSHHHHHHHCCBT
T ss_pred HHHHHhc-----------CC--------CHHHHHHHHHHHHHHHHHHHHHHHhC-----------CCCCHHHHHHHcccC
Confidence 4443321 10 12355677788888898888887642 346999999988653
Q ss_pred ccccCCCCHHHHHHHHHHHhcC
Q 040102 287 ESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 287 ~~~~~~lt~~~i~~~~~~l~~A 308 (308)
+ ..+|+++|.+++.++++|
T Consensus 214 ~---~~l~~~~i~~~~~~l~~A 232 (398)
T 4fb2_A 214 G---ESLSEDDLIGFFTILLLG 232 (398)
T ss_dssp T---BCCCHHHHHHHHHHCCCC
T ss_pred C---CCCCHHHHHHHHHHHHHH
Confidence 2 369999999999999876
No 45
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding, oxidoreductase, omega-hydroxylation, iron, heme, fatty acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium tuberculosis} PDB: 2wm4_A*
Probab=99.87 E-value=1.2e-20 Score=174.30 Aligned_cols=220 Identities=12% Similarity=0.088 Sum_probs=164.0
Q ss_pred CCchHHHHHHHHhcCCeeEEecC-------CcCEEEecCHHHHHHHHHhcccccccCCcc--c-cccccccCCcceEecc
Q 040102 52 PIPHQALHKLSIRYGPLIHLFLG-------SVPCIVACSPETAKEILKTHETSFCDRPIS--A-AVDYLTYGSADFSFAP 121 (308)
Q Consensus 52 ~~~~~~~~~~~~~yG~i~~~~~g-------~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~--~-~~~~~~~~~~~~~~~~ 121 (308)
.+++..+.+|. +||||+++++| ++++++|+||+++++||.++ ..|++||.. . ....+...+.+++ ..
T Consensus 44 ~~p~~~~~~l~-~~Gpv~~~~~~~~~~~~~g~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~-~~ 120 (435)
T 2wm5_A 44 DVRDGAFATLR-REAPISFWPTIELPGFVAGNGHWALTKYDDVFYASRHP-DIFSSYPNITINDQTPELAEYFGSMI-VL 120 (435)
T ss_dssp HHHHHHHHHHH-HHCSEEEECCCCC---CCCCCEEEECSHHHHHHHHHCT-TTEECSSCCSSSCCCHHHHHHHHGGG-GC
T ss_pred CChhHHHHHHH-hcCCeEecccccccccCCCCCeEEEcCHHHHHHHHcCc-ccccCccccccCccccchhhhccccc-cC
Confidence 45788899996 69999999996 67999999999999999875 579988742 1 1222211123444 45
Q ss_pred CChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHH-HHHHHHHHHHHHhcCcccCCchh
Q 040102 122 YGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQICSINDKE 200 (308)
Q Consensus 122 ~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~ 200 (308)
+|+.|+.+||++. +.|++++++.+.+.+.++++++++.|.+. .++.++|+...+ ..+++++|+++ ||.+.+ .
T Consensus 121 dg~~h~~~R~~l~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~-~~~~~vd~~~~~~~~~~~~vi~~~-~G~~~~----~ 193 (435)
T 2wm5_A 121 DDPRHQRLRSIVS-RAFTPKVVARIEAAVRDRAHRLVSSMIAN-NPDRQADLVSELAGPLPLQIICDM-MGIPKA----D 193 (435)
T ss_dssp CTTHHHHHHHHHH-HTCCHHHHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEHHHHTTTHHHHHHHHHH-HTCCGG----G
T ss_pred CcHHHHHHHHHhH-HhhCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCcEehHHHHHHHHHHHHHHHH-cCCCHH----H
Confidence 7999999999996 89999999999999999999999999863 224589999876 78999999999 999873 2
Q ss_pred HHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCHHHHH
Q 040102 201 ADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPMDLLDML 280 (308)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~d~l~~l 280 (308)
.+++.+..+.+.... .|.+ . +..++..+..+.+.+++.++|+++++. ...|+++.|
T Consensus 194 ~~~~~~~~~~~~~~~--------~p~~--~---~~~~~~~~~~~~~~~~~~~~i~~r~~~-----------~~~dll~~l 249 (435)
T 2wm5_A 194 HQRIFHWTNVILGFG--------DPDL--A---TDFDEFMQVSADIGAYATALAEDRRVN-----------HHDDLTSSL 249 (435)
T ss_dssp HHHHHHHHHHHHHTT--------CTTS--C---CCHHHHHHHHHHHHHHHHHHHHHHHHS-----------CCSSHHHHH
T ss_pred HHHHHHHHHHHhccC--------Ccch--h---hhHHHHHHHHHHHHHHHHHHHHHHhcC-----------CCCCHHHHH
Confidence 344555544443221 1321 1 112456677788888999988877531 346999999
Q ss_pred hhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 281 LDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 281 l~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
++...+ +..+|+++|.+++.++++|
T Consensus 250 l~~~~~---~~~ls~~ei~~~~~~l~~A 274 (435)
T 2wm5_A 250 VEAEVD---GERLSSREIASFFILLVVA 274 (435)
T ss_dssp HHCCBT---TBCCCHHHHHHHHHHHHHH
T ss_pred Hhhhcc---CCCCCHHHHHHHHHHHHHH
Confidence 987543 2369999999999998875
No 46
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis; HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB: 2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Probab=99.87 E-value=9.7e-21 Score=174.02 Aligned_cols=215 Identities=11% Similarity=0.150 Sum_probs=158.6
Q ss_pred CCCCchHHHHHHHHhcCCeeEEec-CCcCEEEecCHHHHHHHHHhcccccccCCcc-cccccccc--CCcceEeccCChh
Q 040102 50 LAPIPHQALHKLSIRYGPLIHLFL-GSVPCIVACSPETAKEILKTHETSFCDRPIS-AAVDYLTY--GSADFSFAPYGPY 125 (308)
Q Consensus 50 l~~~~~~~~~~~~~~yG~i~~~~~-g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~-~~~~~~~~--~~~~~~~~~~g~~ 125 (308)
+..+++..+.+| ++||||+++++ |++++++++||+++++||.++ .|++++.. .....+.. .+.++ +..+|+.
T Consensus 35 ~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~i~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~l-~~~dg~~ 110 (417)
T 2y5n_A 35 HGLTLAGRYGEL-QETEPVSRVRPPYGEEAWLVTRYEDVRAVLGDG--RFVRGPSMTRDEPRTRPEMVKGGL-LSMDPPE 110 (417)
T ss_dssp SSCCCCHHHHHH-HHHCSEEEEECSBSCCEEEECSHHHHHHHHTCT--TEESGGGGTSCCCBSSSSCCCCSG-GGCCTTH
T ss_pred hccCchHHHHHH-HhcCCeEeeccCCCceEEEECCHHHHHHHHcCC--CcccCccccccccccCcccccccC-ccCCchH
Confidence 456789999999 89999999997 899999999999999999864 47777643 21111111 12344 4568999
Q ss_pred hhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHH-HHHHHHHHHHHhcCcccCCchhHHHH
Q 040102 126 WKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELI-RLTNNVVSRMTMGQICSINDKEADEV 204 (308)
Q Consensus 126 Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~-~~t~~vi~~~~fG~~~~~~~~~~~~~ 204 (308)
|+.+||++. +.|++++++.+.+.+.++++++++.|.+ . +.++|+...+. .+++++|+. +||.+.+ ..+.+
T Consensus 111 h~~~R~~l~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~--~-~~~vdl~~~~~~~~~~~vi~~-~~G~~~~----~~~~~ 181 (417)
T 2y5n_A 111 HSRLRRLVV-KAFTARRAESLRPRAREIAHELVDQMAA--T-GQPADLVAMFARQLPVRVICE-LLGVPSA----DHDRF 181 (417)
T ss_dssp HHHHHHHHH-HHSCHHHHHHTHHHHHHHHHHHHHHHHH--H-CSSEEHHHHTTTTHHHHHHHH-HHTCCGG----GHHHH
T ss_pred HHHHHHHHh-hhcCHHHHHHHHHHHHHHHHHHHHHHHh--C-CCCeeHHHHHHHHhHHHHHHH-HcCCCHH----HHHHH
Confidence 999999996 7899999999999999999999999975 1 23799988774 699999997 6998763 22333
Q ss_pred HHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCHHHHHhhcc
Q 040102 205 RKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPMDLLDMLLDIS 284 (308)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~ 284 (308)
.+..+. ... .+ .+ + .++..+..+.+.+++.++|+++++. ...|+++.|++..
T Consensus 182 ~~~~~~----~~~-----~~------~~-~-~~~~~~~~~~l~~~~~~~i~~r~~~-----------~~~dll~~ll~~~ 233 (417)
T 2y5n_A 182 TRWSGA----FLS-----TA------EV-T-AEEMQEAAEQAYAYMGDLIDRRRKE-----------PTDDLVSALVQAR 233 (417)
T ss_dssp HHHHHT----TST-----TC------CC-C-HHHHHHHHHHHHHHHHHHHHHHHHS-----------CCSSHHHHHHHCC
T ss_pred HHHHHH----Hhc-----cc------CC-C-HHHHHHHHHHHHHHHHHHHHHHHhC-----------CCCCHHHHHHhhh
Confidence 332221 111 00 01 1 2456677788888888888877532 2469999999886
Q ss_pred ccccccCCCCHHHHHHHHHHHhcC
Q 040102 285 EDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 285 ~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
++ +..+|+++|.+++.++++|
T Consensus 234 ~~---~~~ls~~ei~~~~~~l~~A 254 (417)
T 2y5n_A 234 DQ---QDSLSEQELLDLAIGLLVA 254 (417)
T ss_dssp BT---TBCCCHHHHHHHHHHHHHH
T ss_pred cc---CCCCCHHHHHHHHHHHHHH
Confidence 43 2369999999999999875
No 47
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox oxidoreductase; HET: HEM; 1.75A {Pseudonocardia autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Probab=99.86 E-value=7.6e-21 Score=174.41 Aligned_cols=213 Identities=15% Similarity=0.167 Sum_probs=158.2
Q ss_pred CCCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCccccc---c-cccc-CCcceEeccCCh
Q 040102 50 LAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAV---D-YLTY-GSADFSFAPYGP 124 (308)
Q Consensus 50 l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~---~-~~~~-~~~~~~~~~~g~ 124 (308)
+..+++..+.+| ++|||++++++|+.+++|++||++++++|.++. |++||..... . .+.. .+.++ +..+|+
T Consensus 18 ~~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~--f~~~~~~~~~~~~~~~~~~~~~~~l-~~~~g~ 93 (411)
T 3a4g_A 18 FWQNPHPAYAAL-RAEDPVRKLALPDGPVWLLTRYADVREAFVDPR--LSKDWRHTLPEDQRADMPATPTPMM-ILMDPP 93 (411)
T ss_dssp GTTCCHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHTCTT--EESCGGGGSCGGGCTTCCSCSSCCG-GGCCTT
T ss_pred hhcCchHHHHHH-HhcCCeeeccCCCCCEEEEecHHHHHHHHhCCC--cccccccccccccccccCccccccc-ccCCch
Confidence 456789999999 899999999999999999999999999998763 8888753211 0 1111 22344 456899
Q ss_pred hhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHH-HHHHHHHHHHHHhcCcccCCchhHHH
Q 040102 125 YWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQICSINDKEADE 203 (308)
Q Consensus 125 ~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~~~ 203 (308)
.|+.+||++. +.|++++++.+.+.+.++++++++.|.+ ++++|+...+ ..+++++|+.+ ||.+.+ ....
T Consensus 94 ~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~----~~~vd~~~~~~~~~~~~vi~~~-~G~~~~----~~~~ 163 (411)
T 3a4g_A 94 DHTRLRKLVG-RSFTVRRMNELEPRITEIADGLLAGLPT----DGPVDLMREYAFQIPVQVICEL-LGVPAE----DRDD 163 (411)
T ss_dssp HHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHHHHHSCS----SSCEEHHHHTTTTHHHHHHHHH-HTCCGG----GHHH
T ss_pred HHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHHHh----cCCccHHHHHHHHhHHHHHHHH-hCCCHH----HHHH
Confidence 9999999996 8999999999999999999999998864 3579997655 68999999975 998773 2234
Q ss_pred HHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCHHHHHhhc
Q 040102 204 VRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPMDLLDMLLDI 283 (308)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~d~l~~ll~~ 283 (308)
+.+....+ .. . .| + ++..+..+.+.+++.++|+++++. ...|+++.|++.
T Consensus 164 ~~~~~~~~---~~-~-----~p-------~---~~~~~~~~~~~~~~~~~i~~r~~~-----------~~~d~l~~ll~~ 213 (411)
T 3a4g_A 164 FSAWSSVL---VD-D-----SP-------A---DDKNAAMGKLHGYLSDLLERKRTE-----------PDDALLSSLLAV 213 (411)
T ss_dssp HHHHHHHH---TT-S-----SC-------T---TTHHHHHHHHHHHHHHHHHHHHHS-----------CCSSHHHHHHHC
T ss_pred HHHHHHHH---hc-c-----CC-------H---HHHHHHHHHHHHHHHHHHHHHHhC-----------CCCCHHHHHHHh
Confidence 44433322 11 0 12 1 134556777888888888877532 246999999987
Q ss_pred cccccccCCCCHHHHHHHHHHHhcC
Q 040102 284 SEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 284 ~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
.+++ +..+|+++|.+++.++++|
T Consensus 214 ~~~~--~~~ls~~ei~~~~~~l~~A 236 (411)
T 3a4g_A 214 SDED--GDRLSQEELVAMAMLLLIA 236 (411)
T ss_dssp CCTT--CCCCCHHHHHHHHHHHHHH
T ss_pred hccC--CCCCCHHHHHHHHHHHHHh
Confidence 6422 2369999999999999875
No 48
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450 8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio} PDB: 3b99_A*
Probab=99.86 E-value=2.2e-22 Score=187.53 Aligned_cols=250 Identities=11% Similarity=0.055 Sum_probs=154.8
Q ss_pred HhhccCCCCCCCCCCC-CCeeeecccCCCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCc
Q 040102 25 FRRSKTTSSLPPSPMA-LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPI 103 (308)
Q Consensus 25 ~~~~~~~~~~pPgP~~-~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~ 103 (308)
|.++++..+.||||++ +|++||++++..+++..+.+|.++|||++++++|+.+++|++||+++++++.++.. |+.++.
T Consensus 10 ~~~~~~~~~~pPgp~~~~P~iG~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~-~~~~~~ 88 (475)
T 3b98_A 10 YGRRTRRRNEPPLDKGMIPWLGHALEFGKDAAKFLTRMKEKHGDIFTVRAAGLYITVLLDSNCYDAVLSDVAS-LDQTSY 88 (475)
T ss_dssp ---CCCCTTCCCEECCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEETTEEEEEECCTTTHHHHHTCTTT-EESHHH
T ss_pred hhhcccCCCCCCCCCCCcchHHhHHHHhhCHHHHHHHHHHHhCCeEEEEECCceEEEEeCHHHHHHHHcCccc-CCchHH
Confidence 3344445578999998 99999999886678999999999999999999999999999999999999976542 433322
Q ss_pred c-ccccccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhc--cCCCceehHHHHHHH
Q 040102 104 S-AAVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKA--KASEAVDVGKELIRL 180 (308)
Q Consensus 104 ~-~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~--~~~~~vd~~~~~~~~ 180 (308)
. ....... + .+++ ..+|+.| ||++. +.|+.++++.+.+.+.+++..+++.+.... .....+++...+..+
T Consensus 89 ~~~~~~~~~-g-~~~~-~~~~~~~---R~~~~-~~f~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 161 (475)
T 3b98_A 89 AQVLMKRIF-N-MILP-SHNPESE---KKRAE-MHFQGASLTQLSNSMQNNLRLLMTPSEMGLKTSEWKKDGLFNLCYSL 161 (475)
T ss_dssp HHHHHHHTT-C-CCCT-TCCHHHH---HHHHH-HHTSHHHHHHHHHHHHHHHHHHSSTTTTTCSSCSCEEEEHHHHHHHH
T ss_pred HHHHHHHHh-C-CCCC-CCChHHH---HHHHH-HHcChhhHHHHHHHHHHHHHHHHhhcccccCCCCceeehHHHHHHHH
Confidence 1 1111121 2 2333 3457766 56665 689999999999999888888887764321 112357888888888
Q ss_pred HHHHHHHHHhcCcccCCchhHHHHHHHHHHHHHHhCCCCcccccccccccccc-chHHHHHHHHHHHHHHHHHHHHHHHH
Q 040102 181 TNNVVSRMTMGQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQ-GFGKRLKEVRRKFDDMMERILKEHQE 259 (308)
Q Consensus 181 t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~-~~~~~~~~~~~~~~~~~~~ii~~~~~ 259 (308)
++++++...||.+. . ....+.+..+.... +.+.+|++.+...+ ...++..+..+.+ .+.+.+
T Consensus 162 ~~~~~~~~~~g~~~-~---~~~~~~~~~~~~~~------~~~~~p~l~~~~~~~~~~~~~~~~~~~~----~~~~~~--- 224 (475)
T 3b98_A 162 LFKTGYLTVFGAEN-N---NSAALTQIYEEFRR------FDKLLPKLARTTVNKEEKQIASAAREKL----WKWLTP--- 224 (475)
T ss_dssp HHHHHHHHHHCCTT-S---CHHHHHHHHHHHHH------HHHHHHHHHTTCCCHHHHHHHHHHHHHH----HHHHSC---
T ss_pred HHHHhhhheeCCcc-c---cchhcHHHHHHHHH------HHhhhHHHHHHhcChhhhHHHHHHHHHH----HHHHHH---
Confidence 88888888888543 1 11222222222211 12345654331111 1112222222222 221211
Q ss_pred HhhhhhccCCCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 260 ARKINKETGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 260 ~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
... .. . +...|+++.|++..++.+ .++++++. +++++++|
T Consensus 225 ~~~---~~-~-~~~~d~l~~ll~~~~~~~---~~~~~~i~-~~~~~l~a 264 (475)
T 3b98_A 225 SGL---DR-K-PREQSWLGSYVKQLQDEG---IDAEMQRR-AMLLQLWV 264 (475)
T ss_dssp TTS---CC-C-CCTTSHHHHHHHHHHHTT---CCHHHHHH-HHHHHHHH
T ss_pred HHh---hc-c-ccccHHHHHHHHHHHHcC---CCHHHHHH-HHHHHHHH
Confidence 111 01 1 245799999998754321 58899998 77776654
No 49
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus subtilis} SCOP: a.104.1.0 PDB: 3ejd_B* 3eje_B*
Probab=99.86 E-value=1.1e-20 Score=172.81 Aligned_cols=217 Identities=13% Similarity=0.146 Sum_probs=157.8
Q ss_pred CCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCcccccc---cc-ccCCcceEeccCChhhh
Q 040102 52 PIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAVD---YL-TYGSADFSFAPYGPYWK 127 (308)
Q Consensus 52 ~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~~---~~-~~~~~~~~~~~~g~~Wk 127 (308)
.+|+..+.+| ++||||+++++|+.++++++||++++++|.++ ..|++++...... .+ ...+.++ +..+|+.|+
T Consensus 13 ~~p~~~~~~~-r~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~g~~h~ 89 (404)
T 3ejb_B 13 KNPYSFYDTL-RAVHPIYKGSFLKYPGWYVTGYEETAAILKDA-RFKVRTPLPESSTKYQDLSHVQNQMM-LFQNQPDHR 89 (404)
T ss_dssp HCHHHHHHHH-HHHCSEEEEEETTEEEEEECCHHHHHHHHHCT-TEECCCSSCTTCCTTHHHHHHHHTSG-GGCCTTHHH
T ss_pred cCchHHHHHH-HhhCCEeeccCCCCCEEEEecHHHHHHHHhCc-ccccCcccccccccccchhhhhhcch-hhcCCchHH
Confidence 5688899988 57999999999999999999999999999876 6888887532211 11 0111234 456899999
Q ss_pred hhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHH-HHHHHHHHHHHHhcCcccCCchhHHHHHH
Q 040102 128 FMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQICSINDKEADEVRK 206 (308)
Q Consensus 128 ~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~~~~~~ 206 (308)
++||++. +.|++++++.+.+.+.++++.+++.|.+ +.++|+...+ ..+++++|+. +||.+.+ ..+.+.+
T Consensus 90 ~~Rr~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~----~~~~d~~~~~~~~~~~~vi~~-~~G~~~~----~~~~~~~ 159 (404)
T 3ejb_B 90 RLRTLAS-GAFTPRTTESYQPYIIETVHHLLDQVQG----KKKMEVISDFAFPLASFVIAN-IIGVPEE----DREQLKE 159 (404)
T ss_dssp HHHHHHH-GGGSHHHHHTTHHHHHHHHHHHHHTTTT----TSEEEHHHHTHHHHHHHHHHH-HHTCCGG----GHHHHHH
T ss_pred HHHHHHH-hhcCHHHHHHHHHHHHHHHHHHHHHhhh----cCCcchHHHHHHHHHHHHHHH-HcCCCHH----HHHHHHH
Confidence 9999996 8999999999999999999999988764 4578986655 4699999998 4898763 2334444
Q ss_pred HHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCHHHHHhhcccc
Q 040102 207 LVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPMDLLDMLLDISED 286 (308)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~ 286 (308)
....+..... .|+. ....++..+..+.+.+++.++++++++. ...|+++.|+ ...+
T Consensus 160 ~~~~~~~~~~-------~p~~-----~~~~~~~~~~~~~~~~~~~~~i~~r~~~-----------~~~d~l~~ll-~~~~ 215 (404)
T 3ejb_B 160 WAASLIQTID-------FTRS-----RKALTEGNIMAVQAMAYFKELIQKRKRH-----------PQQDMISMLL-KGRE 215 (404)
T ss_dssp HHHHHHGGGS-------TTCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHS-----------CCSSHHHHHH-HC--
T ss_pred HHHHHHHhcc-------CCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------CcchHHHHHH-hccc
Confidence 4333322211 1321 1123556677788888888888877531 3569999999 4332
Q ss_pred ccccCCCCHHHHHHHHHHHhcC
Q 040102 287 ESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 287 ~~~~~~lt~~~i~~~~~~l~~A 308 (308)
+..+|+++|.+++.++++|
T Consensus 216 ---~~~ls~~el~~~~~~l~~A 234 (404)
T 3ejb_B 216 ---KDKLTEEEAASTCILLAIA 234 (404)
T ss_dssp -----CCCHHHHHHHHHHHHHH
T ss_pred ---CCCCCHHHHHHHHHHHHHc
Confidence 2369999999999998875
No 50
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105, oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea recticatena}
Probab=99.86 E-value=5.9e-21 Score=175.23 Aligned_cols=226 Identities=12% Similarity=0.132 Sum_probs=162.0
Q ss_pred CCCCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEec-CCcCEEEecCHHHHHHHHHhcccccccCCcccccc-----
Q 040102 35 PPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFL-GSVPCIVACSPETAKEILKTHETSFCDRPISAAVD----- 108 (308)
Q Consensus 35 pPgP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~-g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~~----- 108 (308)
.|||.. |+- ..+..+|+..+.+|. +|||++++++ |++++++++||++++++|.++ .|++|+......
T Consensus 9 ~~g~~~-~~~---~~~~~~p~~~~~~l~-~~Gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~ 81 (413)
T 2z36_A 9 LAGLEL-PVE---RGCPFAPPAAYERLR-ERAPINKVRLTSGGQAWWVSGHEEARAVLADG--RFSSDKRKDGFPLFTLD 81 (413)
T ss_dssp -CCCEE-CCC---CCBTTBCCHHHHHHH-HHCSEEEEEETTSCEEEEECSHHHHHHHHHCT--TEECCTTSTTCCCSSCC
T ss_pred hccccC-CCC---cccccCchHHHHHHH-HcCCeeEeecCCCceEEEEecHHHHHHHHcCC--CcccCccccCccccccc
Confidence 467663 442 234567899999997 7899999997 899999999999999999873 688876432111
Q ss_pred -cccc---CCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHH-HHHHH
Q 040102 109 -YLTY---GSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELI-RLTNN 183 (308)
Q Consensus 109 -~~~~---~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~-~~t~~ 183 (308)
.... ++.+.++..+|+.|+.+||++. +.|++++++.+.+.+.++++++++.|.+ ..++++|+...+. .++++
T Consensus 82 ~~~~~~~~~~~~~l~~~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~--~~~~~~d~~~~~~~~~~~~ 158 (413)
T 2z36_A 82 AATLQQLRSQPPLMLGMDGAEHSAARRPVI-GEFTVKRLAALRPRIQDIVDHFIDDMLA--TDQRPVDLVQALSLPVPSL 158 (413)
T ss_dssp HHHHHHHTTSCCCGGGCCHHHHHHHHHHHH-GGGSHHHHHHHHHHHHHHHHHHHHHHTT--CSCSSEEHHHHTTTHHHHH
T ss_pred cccccccccccccccccCchHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCccHHHHHhhhhHHH
Confidence 1110 1234134457999999999996 8899999999999999999999999874 1256899987665 69999
Q ss_pred HHHHHHhcCcccCCchhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040102 184 VVSRMTMGQICSINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKI 263 (308)
Q Consensus 184 vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 263 (308)
+|+.+ ||.+.+ ..+.+....+. ... . . .+ ++..+..+.+.+++.++|+++++.
T Consensus 159 vi~~~-~G~~~~----~~~~~~~~~~~----~~~-----~------~--~~--~~~~~~~~~~~~~~~~~i~~r~~~--- 211 (413)
T 2z36_A 159 VICEL-LGVPYT----DHDFFQSRTTM----MVS-----R------T--SM--EDRRRAFAELRAYIDDLITRKESE--- 211 (413)
T ss_dssp HHHHH-HTCCGG----GHHHHHHHHHH----TTC-----S------S--CH--HHHHHHHHHHHHHHHHHHHHHHSS---
T ss_pred HHHHH-hCCCHH----HHHHHHHHHHH----Hhc-----c------c--Cc--HHHHHHHHHHHHHHHHHHHHHHhC---
Confidence 99984 998763 22333332221 110 0 0 01 455667778888888888776421
Q ss_pred hhccCCCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 264 NKETGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 264 ~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
...|+++.|++..++ +..+|+++|.+++.++++|
T Consensus 212 --------~~~dll~~ll~~~~~---~~~ls~~ei~~~~~~l~~A 245 (413)
T 2z36_A 212 --------PGDDLFSRQIARQRQ---EGTLDHAGLVSLAFLLLTA 245 (413)
T ss_dssp --------CCSSHHHHHHHHHHH---HSCCCHHHHHHHHHHHHHH
T ss_pred --------CCCCHHHHHHHhhcC---CCCCCHHHHHHHHHHHHhc
Confidence 346999999987432 2369999999999999875
No 51
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin, oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A* 1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Probab=99.86 E-value=1e-20 Score=173.16 Aligned_cols=214 Identities=13% Similarity=0.133 Sum_probs=159.5
Q ss_pred CCCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCcc--c----ccc---cc-cc----CCc
Q 040102 50 LAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPIS--A----AVD---YL-TY----GSA 115 (308)
Q Consensus 50 l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~--~----~~~---~~-~~----~~~ 115 (308)
+..+|+..+.+| ++||||+++++|++++++++||++++++|.++ .|++++.. . ... .+ .. .+.
T Consensus 12 ~~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (404)
T 1z8o_A 12 FHVDWYRTYAEL-RETAPVTPVRFLGQDAWLVTGYDEAKAALSDL--RLSSDPKKKYPGVEVEFPAYLGFPEDVRNYFAT 88 (404)
T ss_dssp GTSSHHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHHCT--TEECCTTCCCTTCCCCCGGGTTCCHHHHHHHSS
T ss_pred cccCcHHHHHHH-HhcCCeeeecCCCceEEEEcCHHHHHHHHcCC--Cccccccccccccccccccccccccchhhhccc
Confidence 346789999999 89999999999999999999999999999876 68888753 1 110 11 00 123
Q ss_pred ceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHH-HHHHHHHHHHHHhcCcc
Q 040102 116 DFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQIC 194 (308)
Q Consensus 116 ~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~ 194 (308)
++ +..+|+.|+.+||++. +.|++++++.+.+.+.++++++++.|.+ ++++|+...+ ..+++++|+. +||.+.
T Consensus 89 ~l-~~~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~----~~~~d~~~~~~~~~~~~vi~~-~~G~~~ 161 (404)
T 1z8o_A 89 NM-GTSDPPTHTRLRKLVS-QEFTVRRVEAMRPRVEQITAELLDEVGD----SGVVDIVDRFAHPLPIKVICE-LLGVDE 161 (404)
T ss_dssp SG-GGCCTTHHHHHHHHHH-TTSCHHHHHHTHHHHHHHHHHHHHTSCS----SSEEEHHHHTTTHHHHHHHHH-HTTCCG
T ss_pred cc-ccCCCcHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHhhhh----cCCcchHHHHhHHHHHHHHHH-HhCCCH
Confidence 44 4458999999999996 8999999999999999999999988753 4589998766 6899999998 499876
Q ss_pred cCCchhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCC
Q 040102 195 SINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPM 274 (308)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~ 274 (308)
+. .+.+.+..+.+.. . .| +. .++..+..+.+.+++.++|++++++ ...
T Consensus 162 ~~----~~~~~~~~~~~~~----~-----~~-------p~-~~~~~~~~~~~~~~~~~~i~~r~~~-----------~~~ 209 (404)
T 1z8o_A 162 KY----RGEFGRWSSEILV----M-----DP-------ER-AEQRGQAAREVVNFILDLVERRRTE-----------PGD 209 (404)
T ss_dssp GG----TTTHHHHHHHHHC----C-----CG-------GG-HHHHHHHHHHHHHHHHHHHHHHHHS-----------CCS
T ss_pred HH----HHHHHHHHHHHhc----c-----CC-------hh-HHHHHHHHHHHHHHHHHHHHHHHhC-----------CCC
Confidence 32 1234443333221 0 11 11 3456677788888888888877532 245
Q ss_pred CHHHHHhhc-cccccccCCCCHHHHHHHHHHHhcC
Q 040102 275 DLLDMLLDI-SEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 275 d~l~~ll~~-~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
|+++.|++. .++ +..+|+++|.+++.++++|
T Consensus 210 dll~~ll~~~~~~---~~~l~~~ei~~~~~~~~~A 241 (404)
T 1z8o_A 210 DLLSALIRVQDDD---DGRLSADELTSIALVLLLA 241 (404)
T ss_dssp SHHHHHHHCEETT---TEECCHHHHHHHHHHHHHH
T ss_pred CHHHHHHhhhccc---CCCCCHHHHHHHHHHHHhc
Confidence 999999987 432 2269999999999999875
No 52
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A {Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A* 1pkf_A*
Probab=99.85 E-value=8.7e-21 Score=174.40 Aligned_cols=219 Identities=16% Similarity=0.171 Sum_probs=161.2
Q ss_pred CCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCc-----cc---cccccccC-CcceEecc
Q 040102 51 APIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPI-----SA---AVDYLTYG-SADFSFAP 121 (308)
Q Consensus 51 ~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~-----~~---~~~~~~~~-~~~~~~~~ 121 (308)
..+++..+.+| ++||||++ + |+.+++|++||+++++||.++. |++|+. .. ....+... +.++ +..
T Consensus 25 ~~~p~~~~~~l-~~~Gpv~~-~-~~~~~vvv~~~~~v~~vl~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~ 98 (419)
T 1q5d_A 25 AEDPFPAIERL-REATPIFY-W-DEGRSWVLTRYHDVSAVFRDER--FAVSREEWESSAEYSSAIPELSDMKKYGL-FGL 98 (419)
T ss_dssp TTCCHHHHHHH-HHHCSEEE-E-TTTTEEEECSHHHHHHHHTCTT--EECCGGGSTTHHHHHHSSGGGHHHHHHST-TTS
T ss_pred hhChHHHHHHH-HhhCCccc-c-CCCCEEEEecHHHHHHHHcCCC--ccccccccccccccccccchhhhhccccc-ccC
Confidence 46789999999 68999999 6 7789999999999999998764 988872 11 11122100 1234 445
Q ss_pred CChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHH-HHHHHHHHHHHHhcCcccCCchh
Q 040102 122 YGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQICSINDKE 200 (308)
Q Consensus 122 ~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~ 200 (308)
+|+.|+.+||++. +.|++++++.+.+.+.++++++++.|.+ +.++|+...+ ..+++++|+.+ ||.+.+ .
T Consensus 99 ~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~----~~~~d~~~~~~~~~~~~vi~~~-fG~~~~----~ 168 (419)
T 1q5d_A 99 PPEDHARVRKLVN-PSFTSRAIDLLRAEIQRTVDQLLDARSG----QEEFDVVRDYAEGIPMRAISAL-LKVPAE----C 168 (419)
T ss_dssp CHHHHHHHHHHHG-GGGSHHHHGGGHHHHHHHHHHHHHHHTT----SSCEETTTTTGGGSHHHHHHHH-TTCCGG----G
T ss_pred CchHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHHHHH-hCCCHH----H
Confidence 7999999999995 8999999999999999999999999865 2379988655 89999999998 999873 2
Q ss_pred HHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCC-CHHHH
Q 040102 201 ADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPM-DLLDM 279 (308)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-d~l~~ 279 (308)
.+.+.+..+.+..... ...+|+. .+..++..+....+.+++.++|++++++ ... |+++.
T Consensus 169 ~~~~~~~~~~~~~~~~----~~~~P~~-----~~~~~~~~~~~~~~~~~~~~~i~~r~~~-----------~~~~dll~~ 228 (419)
T 1q5d_A 169 DEKFRRFGSATARALG----VGLVPRV-----DEETKTLVASVTEGLALLHGVLDERRRN-----------PLENDVLTM 228 (419)
T ss_dssp HHHHHHHHHHHHHHTT----TTTSSCC-----CSCHHHHHHHHHHHHHHHHHHHHHHHHS-----------CCSSCHHHH
T ss_pred HHHHHHHHHHHHHhcc----cccccCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------CCCCCHHHH
Confidence 3445555554443322 1123432 1123456677888888999988887532 234 99999
Q ss_pred HhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 280 LLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 280 ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
|++..++ +..+|+++|.+++.++++|
T Consensus 229 ll~~~~~---~~~l~~~ei~~~~~~l~~A 254 (419)
T 1q5d_A 229 LLQAEAD---GSRLSTKELVALVGAIIAA 254 (419)
T ss_dssp HHHHHHS---STTCCHHHHHHHHHHHHHH
T ss_pred HHhhhcc---CCCCCHHHHHHHHHHHHHH
Confidence 9987542 2369999999999999875
No 53
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide antibiotics, 12- and 14- carbon macrolactone monooxygenase, heme; HET: HEM; 1.92A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.85 E-value=2.1e-20 Score=171.47 Aligned_cols=215 Identities=18% Similarity=0.164 Sum_probs=158.2
Q ss_pred cCCCCchHHHHHHHHhcCCeeEEec-CCcCEEEecCHHHHHHHHHhcccccccCCc-ccccc--cccc--------C-Cc
Q 040102 49 LLAPIPHQALHKLSIRYGPLIHLFL-GSVPCIVACSPETAKEILKTHETSFCDRPI-SAAVD--YLTY--------G-SA 115 (308)
Q Consensus 49 ~l~~~~~~~~~~~~~~yG~i~~~~~-g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~-~~~~~--~~~~--------~-~~ 115 (308)
.+..+++..+.+| ++|||++++++ |+.++++++||+++++||.++. |++++. ..... .+.. . +.
T Consensus 14 ~~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (411)
T 1gwi_A 14 PFVTDLDGESARL-RAAGPLAAVELPGGVPVWAVTHHAEAKALLTDPR--LVKDINVWGAWRRGEIPADWPLIGLANPGR 90 (411)
T ss_dssp TTCSCHHHHHHHH-HHTCSEEEEEETTTEEEEEECSHHHHHHHHTCTT--EECCGGGCHHHHTTCSCTTCTTHHHHSCCS
T ss_pred cccCChHHHHHHH-HHhCCeeeeecCCCccEEEEeCHHHHHHHHcCCc--cccCcccccccccccCCcccchhhhhcccc
Confidence 3456789999999 89999999997 9999999999999999998753 445541 11000 0000 1 22
Q ss_pred ceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHH-HHHHHHHHHHHhcCcc
Q 040102 116 DFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELI-RLTNNVVSRMTMGQIC 194 (308)
Q Consensus 116 ~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~-~~t~~vi~~~~fG~~~ 194 (308)
++ +..+|+.|+.+||++. +.|++++++.+.+.+.++++++++.|.+ .+.++|+...+. .+++++|+. +||.+.
T Consensus 91 ~l-~~~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~~~~~d~~~~~~~~~~~~vi~~-~~G~~~ 164 (411)
T 1gwi_A 91 SM-LTVDGAEHRRLRTLVA-QALTVRRVEHMRGRITELTDRLLDELPA---DGGVVDLKAAFAYPLPMYVVAD-LMGIEE 164 (411)
T ss_dssp SG-GGCCHHHHHHHHHHHT-TTSCHHHHHTTHHHHHHHHHHHHHTSCC---SCCCEEHHHHTTTHHHHHHHHH-HHTCCG
T ss_pred cc-ccCCcHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHHHH---cCCCcchHHHHhhHHHHHHHHH-HhCCCH
Confidence 34 4568999999999996 8999999999999999999999998863 256899998886 599999996 799876
Q ss_pred cCCchhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCC
Q 040102 195 SINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPM 274 (308)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~ 274 (308)
+ ..+++.+....+... . .. .++..+..+.+.+++.++|++++++ ...
T Consensus 165 ~----~~~~~~~~~~~~~~~----~------------~~--~~~~~~~~~~~~~~~~~~i~~r~~~-----------~~~ 211 (411)
T 1gwi_A 165 A----RLPRLKVLFEKFFST----Q------------TP--PEEVVATLTELASIMTDTVAAKRAA-----------PGD 211 (411)
T ss_dssp G----GHHHHHHHHHHHHCT----T------------SC--HHHHHHHHHHHHHHHHHHHHHHHHS-----------CCS
T ss_pred H----HHHHHHHHHHHHhcc----C------------CC--hHHHHHHHHHHHHHHHHHHHHHHhC-----------CCC
Confidence 3 233454444432210 0 00 2345667778888888888877531 246
Q ss_pred CHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 275 DLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 275 d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
|+++.|++..++ +..+|+++|++++.++++|
T Consensus 212 d~l~~ll~~~~~---~~~l~~~~i~~~~~~~~~A 242 (411)
T 1gwi_A 212 DLTSALIQASEN---GDHLTDAEIVSTLQLMVAA 242 (411)
T ss_dssp SHHHHHHHCCBT---TBCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhccc---CCCCCHHHHHHHHHHHHHH
Confidence 999999988643 2369999999999999875
No 54
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM; 1.60A {Mycobacterium tuberculosis}
Probab=99.85 E-value=5.5e-20 Score=167.87 Aligned_cols=212 Identities=10% Similarity=0.055 Sum_probs=157.7
Q ss_pred CCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCccccccccccCCcceEeccCChhhhhhhh
Q 040102 52 PIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAVDYLTYGSADFSFAPYGPYWKFMKK 131 (308)
Q Consensus 52 ~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr 131 (308)
.+|+..+.+|.+ ||||+++. . ++++++||+++++||.++ ..|++++... .... .+.++ +..+|+.|+.+||
T Consensus 18 ~~p~~~~~~l~~-~Gpv~~~~--~-~~vvv~~~~~v~~vl~~~-~~f~~~~~~~-~~~~--~~~~l-~~~~g~~h~~~R~ 88 (398)
T 2xkr_A 18 REARAAYRWMRA-NQPVFRDR--N-GLAAASTYQAVIDAERQP-ELFSNAGGIR-PDQP--ALPMM-IDMDDPAHLLRRK 88 (398)
T ss_dssp TTHHHHHHHHHH-HCSEEECT--T-CCEEECSHHHHHHHHTCT-TTEESTTCSS-TTSC--CCSSG-GGCCTTHHHHHHH
T ss_pred cChhHHHHHHHh-cCCeeecC--C-CeEEEecHHHHHHHHhCc-ccccCccccC-Cccc--ccccc-cccCchHHHHHHH
Confidence 568899999987 99998554 4 899999999999999765 4788887432 2222 12344 4457999999999
Q ss_pred HHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHH-HHHHHHHHHHHHHhcCcccCCchhHHHHHHHHHH
Q 040102 132 LCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKE-LIRLTNNVVSRMTMGQICSINDKEADEVRKLVQE 210 (308)
Q Consensus 132 ~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~-~~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~ 210 (308)
++. +.|++++++.+.+.+.++++++++.|.+ +.++|+... ...+++++|+.+ ||.+.+ ..+++.+..+.
T Consensus 89 ~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~----~~~~d~~~~~~~~~~~~vi~~~-fG~~~~----~~~~~~~~~~~ 158 (398)
T 2xkr_A 89 LVN-AGFTRKRVKDKEASIAALCDTLIDAVCE----RGECDFVRDLAAPLPMAVIGDM-LGVRPE----QRDMFLRWSDD 158 (398)
T ss_dssp HHG-GGSCHHHHHTTHHHHHHHHHHHHHTTTT----TSEEEHHHHTTTHHHHHHHHHH-HTCCGG----GHHHHHHHHHH
T ss_pred Hhh-hhhCHHHHHHHHHHHHHHHHHHHHhhhh----cCCccHHHHHHHHHHHHHHHHH-hCCCHH----HHHHHHHHHHH
Confidence 995 8999999999999999999999998865 247999855 468999999998 999873 23345555444
Q ss_pred HHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCHHHHHhhcccccccc
Q 040102 211 TAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPMDLLDMLLDISEDESSE 290 (308)
Q Consensus 211 ~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~ 290 (308)
+...... .++| +..++..+..+.+.+++.++|+++++. ...|+++.|++...+ +
T Consensus 159 ~~~~~~~----~~~p--------~~~~~~~~~~~~~~~~~~~~i~~r~~~-----------~~~dll~~ll~~~~~---~ 212 (398)
T 2xkr_A 159 LVTFLSS----HVSQ--------EDFQITMDAFAAYNDFTRATIAARRAD-----------PTDDLVSVLVSSEVD---G 212 (398)
T ss_dssp HHHHHTS----CCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-----------CCSSHHHHHHHCCBT---T
T ss_pred HHhccCc----ccch--------hhHHHHHHHHHHHHHHHHHHHHHHHhC-----------CCCCHHHHHHHhhcc---C
Confidence 4333211 1111 223456677788888888888877531 346999999988643 2
Q ss_pred CCCCHHHHHHHHHHHhcC
Q 040102 291 IKLTRENIKAFILDIFAA 308 (308)
Q Consensus 291 ~~lt~~~i~~~~~~l~~A 308 (308)
..+|+++|.+++.++++|
T Consensus 213 ~~ls~~ei~~~~~~l~~A 230 (398)
T 2xkr_A 213 ERLSDDELVMETLLILIG 230 (398)
T ss_dssp BCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 369999999999999875
No 55
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12; 1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Probab=99.84 E-value=2e-20 Score=171.74 Aligned_cols=220 Identities=15% Similarity=0.149 Sum_probs=157.7
Q ss_pred CCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCccccccccc--------cCCcceEeccC
Q 040102 51 APIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAVDYLT--------YGSADFSFAPY 122 (308)
Q Consensus 51 ~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~~~~~--------~~~~~~~~~~~ 122 (308)
..+|+..+.+| ++||||+++++| +++|+||+++++||.+ ...+++||......... ..+.+ ++..+
T Consensus 28 ~~~p~~~~~~l-r~~gpv~~~~~g---~~vv~~~~~v~~vl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~d 101 (418)
T 3r9b_A 28 RADPYPIYDRI-RRGGPLALPEAN---LAVFSSFSDCDDVLRH-PSSCSDRTKSTIFQRQLAAETQPRPQGPAS-FLFLD 101 (418)
T ss_dssp TTCCHHHHHHH-HHHCCEEEGGGT---EEEECSHHHHHHHHHC-TTEECCGGGCHHHHHHHC---------CCC-GGGCC
T ss_pred ccCchHHHHHH-HhcCCEEECCCC---eEEEecHHHHHHHHcC-cccccCcccccccccccccccccccccccc-hhhcC
Confidence 57889999999 578999999988 9999999999999965 45567776433222111 11223 34457
Q ss_pred ChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHH-HHHHHHHHHHHHhcCcccCCchhH
Q 040102 123 GPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQICSINDKEA 201 (308)
Q Consensus 123 g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~ 201 (308)
|+.|+++||++. +.|++++++.+.+.+.++++.+++ +.+ +.++|+...+ ..+++++|+. +||.+.+ ..
T Consensus 102 g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~-l~~----~~~~d~~~~~~~~~~~~vi~~-~~G~~~~----~~ 170 (418)
T 3r9b_A 102 PPDHTRLRGLVS-KAFAPRVIKRLEPEITALVDQLLD-AVD----GPEFNLIDNLAYPLPVAVICR-LLGVPIE----DE 170 (418)
T ss_dssp TTHHHHHHHHHH-GGGSHHHHGGGHHHHHHHHHHHHH-TCC----SSEEEHHHHTTTHHHHHHHHH-HHTCCGG----GH
T ss_pred CchHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHh-hhc----cCCeehHHHHhCcCCHHHHHH-HcCCCHH----HH
Confidence 999999999996 899999999999999999999998 643 3489986665 5899999999 8998873 23
Q ss_pred HHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCHHHHHh
Q 040102 202 DEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPMDLLDMLL 281 (308)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~d~l~~ll 281 (308)
+.+.+....+..... .++.+.++ +....++..+..+.+.+++.++|+++++ +...|+++.|+
T Consensus 171 ~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~~r~~-----------~~~~d~l~~ll 232 (418)
T 3r9b_A 171 PKFSRASALLAAALD------PFLALTGE-TSDLFDEQMKAGMWLRDYLRALIDERRR-----------TPGEDLMSGLV 232 (418)
T ss_dssp HHHHHHHHHHHHTTS------CHHHHHSS-CCTTHHHHHHHHHHHHHHHHHHHHHTTT-----------SCCSSHHHHHH
T ss_pred HHHHHHHHHHHhhcC------cccccccc-CHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------CCCccHHHHHH
Confidence 344444443322221 11111111 2233466777888888888888876642 13569999999
Q ss_pred hccccccccCCCCHHHHHHHHHHHhcC
Q 040102 282 DISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 282 ~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
+..+++ ..+|+++|.+++.++++|
T Consensus 233 ~~~~~~---~~ls~~ei~~~~~~l~~A 256 (418)
T 3r9b_A 233 AVEESG---DQLTEDEIIATCNLLLIA 256 (418)
T ss_dssp HHHHHS---SSCCHHHHHHHHHHHHHH
T ss_pred Hhhhcc---CCCCHHHHHHHHHHHHHH
Confidence 874332 369999999999999875
No 56
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans} SCOP: a.104.1.0 PDB: 3lxi_A*
Probab=99.84 E-value=6.4e-20 Score=168.69 Aligned_cols=217 Identities=13% Similarity=0.095 Sum_probs=157.0
Q ss_pred CCchHHHHHHHHhcC-CeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCccccccccccCCcceEeccCChhhhhhh
Q 040102 52 PIPHQALHKLSIRYG-PLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAVDYLTYGSADFSFAPYGPYWKFMK 130 (308)
Q Consensus 52 ~~~~~~~~~~~~~yG-~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~R 130 (308)
.+|+..+.++.+++| ||+++..|+ ++++|+||+++++|| ++...|++++...........+ ..++..+|+.|+++|
T Consensus 38 ~dp~~~~~~lr~~~G~pv~~~~~~~-~~~vv~~~~~v~~vl-~~~~~f~~~~~~~~~~~~~~~~-~~~~~~dg~~h~~~R 114 (421)
T 3lxh_A 38 QGFHEAWKRVQQPDTPPLVWTPFTG-GHWIATRGTLIDEIY-RSPERFSSRVIWVPREAGEAYD-MVPTKLDPPEHTPYR 114 (421)
T ss_dssp GCHHHHHHHHCCTTCCSEEEESSTT-SEEEECSHHHHHHHH-TCTTTEETTCCSSSHHHHHHCC-CTTTTCCTTTHHHHH
T ss_pred cChhHHHHHHHhcCCCCeEeccCCC-CeEEEcCHHHHHHHH-cChhhccCCcccCCcccccccc-cCCccCCcHHHHHHH
Confidence 468899999987655 899999887 599999999999999 5567898887432211111122 234456899999999
Q ss_pred hHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHH-HHHHHHHHHHHHhcCcccCCchhHHHHHHHHH
Q 040102 131 KLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQICSINDKEADEVRKLVQ 209 (308)
Q Consensus 131 r~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~ 209 (308)
|++. +.|++++++.+.+.+.++++++++.|.+ +.++|+...+ ..++.++++. +||.+.+ ..+.+.+...
T Consensus 115 ~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~----~~~~d~~~~~~~~~~~~v~~~-~~G~~~~----~~~~~~~~~~ 184 (421)
T 3lxh_A 115 KAID-KGLNLAEIRKLEDQIRTIAVEIIEGFAD----RGHCEFGSEFSTVFPVRVFLA-LAGLPVE----DATKLGLLAN 184 (421)
T ss_dssp HHHH-HHHSHHHHHTTHHHHHHHHHHHHHTTTT----TSEEEHHHHTTTTHHHHHHHH-HHTCCGG----GHHHHHHHHH
T ss_pred HHHh-hhcCHHHHHHHHHHHHHHHHHHHHHHhh----cCCeehHHHHHHHHHHHHHHH-HcCCCHH----HHHHHHHHHH
Confidence 9996 8999999999999999999999998764 3478976666 5678888876 5898762 2344544444
Q ss_pred HHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCHHHHHhhccccccc
Q 040102 210 ETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPMDLLDMLLDISEDESS 289 (308)
Q Consensus 210 ~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~ 289 (308)
.+. .. ...+| ....++..+..+.+.+++.++|+++++ ....|+++.|++...++
T Consensus 185 ~~~---~~---~~~~p-------~~~~~~~~~~~~~~~~~~~~~i~~r~~-----------~~~~dll~~ll~~~~~~-- 238 (421)
T 3lxh_A 185 EMT---RP---SGNTP-------EEQGRSLEAANKGFFEYVAPIIAARRG-----------GSGTDLITRILNVEIDG-- 238 (421)
T ss_dssp HHH---SC---CCSSH-------HHHHHHHHHHHHHHHHHHHHHHHHHTT-----------CCCCSHHHHHHTSCBTT--
T ss_pred HHh---cc---ccCCC-------chhHHHHHHHHHHHHHHHHHHHHHHHh-----------CCCCCHHHHHHhhhccC--
Confidence 332 11 11112 122456677788888888888877642 13569999999886532
Q ss_pred cCCCCHHHHHHHHHHHhcC
Q 040102 290 EIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 290 ~~~lt~~~i~~~~~~l~~A 308 (308)
..+|+++|.+++.++++|
T Consensus 239 -~~l~~~ei~~~~~~l~~A 256 (421)
T 3lxh_A 239 -KPMPDDRALGLVSLLLLG 256 (421)
T ss_dssp -BCCCHHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHH
Confidence 369999999999999875
No 57
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase, metal-binding, oxidoreductase, hypothetical protein; HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB: 2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Probab=99.83 E-value=8.6e-20 Score=167.54 Aligned_cols=223 Identities=11% Similarity=0.079 Sum_probs=158.0
Q ss_pred eeeecccC-----CCCchHHHHHHHHhcCCee-----EEecCCcCEEEecCHHHHHHHHHhcccccccCCccc-ccc--c
Q 040102 43 IIGHLHLL-----APIPHQALHKLSIRYGPLI-----HLFLGSVPCIVACSPETAKEILKTHETSFCDRPISA-AVD--Y 109 (308)
Q Consensus 43 llGnl~~l-----~~~~~~~~~~~~~~yG~i~-----~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~-~~~--~ 109 (308)
+.|+.+++ ..+|+..+.+|. +||||+ ++++ .++++++||+++++||.++ ..|+++|... ... .
T Consensus 11 ~~~~~~~~~~~~~~~~p~~~~~~l~-~~Gpv~~~~~~~~~~--~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~ 86 (414)
T 2uuq_A 11 VMSHEFQLATAETWPNPWPMYRALR-DHDPVHHVVPPQRPE--YDYYVLSRHADVWSAARDH-QTFSSAQGLTVNYGELE 86 (414)
T ss_dssp --CCSCCCCCTTTTTCCHHHHHHHH-HHCSEEEECCTTCGG--GCEEEECSHHHHHHHHHCT-TTEESTTCSSSCTTHHH
T ss_pred hhcCccCcCChhhccCchHHHHHHH-hcCCEEcccccccCC--CCEEEEcCHHHHHHHHcCc-hhccCCCCcccccCccc
Confidence 34555554 256889999995 699999 8887 7899999999999999876 6798887542 121 2
Q ss_pred c-c-cCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHH-HHHHHHHHHHH
Q 040102 110 L-T-YGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGK-ELIRLTNNVVS 186 (308)
Q Consensus 110 ~-~-~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~-~~~~~t~~vi~ 186 (308)
+ . ..+.++++ .+|+.|+.+||++. +.|++++++.+.+.+.++++++++.|.+. +++|+.. .+..+++++|+
T Consensus 87 ~~~~~~~~~l~~-~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~----~~vdl~~~~~~~~~~~vi~ 160 (414)
T 2uuq_A 87 MIGLHDTPPMVM-QDPPVHTEFRKLVS-RGFTPRQVETVEPTVRKFVVERLEKLRAN----GGGDIVTELFKPLPSMVVA 160 (414)
T ss_dssp HHTCSSSCCGGG-CCTTHHHHHHHHHH-TTSSHHHHHHHHHHHHHHHHHHHHHHHHT----TEEEHHHHTTTHHHHHHHH
T ss_pred cccccccccccc-CCchhHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHhc----CCccHHHHHHHHhHHHHHH
Confidence 2 1 12234444 57999999999996 89999999999999999999999999762 3699974 45799999999
Q ss_pred HHHhcCcccCCchhHHHHHHHHHHHHHHhCCCCccccc-cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 040102 187 RMTMGQICSINDKEADEVRKLVQETAELTGKFNLQDYI-WFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINK 265 (308)
Q Consensus 187 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 265 (308)
. +||.+.+ ..+++.+..+.+... .++ |.. .+..++.+.+.+++.++|+++++
T Consensus 161 ~-~~G~~~~----~~~~~~~~~~~~~~~-------~~~~p~~---------~~~~~~~~~~~~~~~~~i~~r~~------ 213 (414)
T 2uuq_A 161 H-YLGVPEE----DWTQFDGWTQAIVAA-------NAVDGAT---------TGALDAVGSMMAYFTGLIERRRT------ 213 (414)
T ss_dssp H-HTTCCGG----GHHHHHHHHHHHHHH-------HHC--------------CCHHHHHHHHHHHHHHHHHHTT------
T ss_pred H-HhCCCHH----HHHHHHHHHHHHHhh-------cccCCch---------hHHHHHHHHHHHHHHHHHHHHHh------
Confidence 8 6999873 223444444433221 112 211 12334566777788888876642
Q ss_pred ccCCCCCCCCHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 266 ETGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 266 ~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
+...|+++.|++...+++ +..+|+++|.+++.++++|
T Consensus 214 -----~~~~dll~~ll~~~~~~~-~~~ls~~ei~~~~~~l~~A 250 (414)
T 2uuq_A 214 -----EPADDAISHLVAAGVGAD-GDTAGTLSILAFTFTMVTG 250 (414)
T ss_dssp -----SCCSSHHHHHHHTTTTCT-TCHHHHHHHHHHHHHHHHH
T ss_pred -----CCCCCHHHHHHhcccccC-CCCCCHHHHHHHHHHHHHh
Confidence 134699999998764111 2369999999999999875
No 58
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB: 2z3u_A* 3a1l_A*
Probab=99.83 E-value=8.3e-20 Score=168.20 Aligned_cols=218 Identities=13% Similarity=0.090 Sum_probs=154.1
Q ss_pred CCchHHHHHHHHhcCCeeEEecC--CcCEEEecCHHHHHHHHHhcccccccCCcc--------c-ccc---c-c-ccCCc
Q 040102 52 PIPHQALHKLSIRYGPLIHLFLG--SVPCIVACSPETAKEILKTHETSFCDRPIS--------A-AVD---Y-L-TYGSA 115 (308)
Q Consensus 52 ~~~~~~~~~~~~~yG~i~~~~~g--~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~--------~-~~~---~-~-~~~~~ 115 (308)
.+++..+.++.+ ||||+++++| +.++++++||+++++||.++ .|++||.. . ... . . ..++.
T Consensus 20 ~~p~~~~~~l~~-~Gpv~~~~~g~~~~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (425)
T 2z3t_A 20 ADPYPVYRRYRE-AAPVHRTASGPGKPDTYYVFTYDDVVRVLSNR--RLGRNARVASGDTDTAPVPIPTEHRALRTVVEN 96 (425)
T ss_dssp HCCHHHHHHHHH-HCSEEEECCCSSCCCEEEECSHHHHHHHHHCT--TEESSCCCC---------------CHHHHHHTT
T ss_pred cChHHHHHHHHh-cCCeEeccccCCCCCeEEEcCHHHHHHHHcCC--Ccccccccccccccccccccccccccccccccc
Confidence 567889999865 9999999998 88999999999999999875 79888742 1 100 0 0 01113
Q ss_pred ceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHH-HHHHHHHHHHHHhcCcc
Q 040102 116 DFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQIC 194 (308)
Q Consensus 116 ~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~ 194 (308)
++++ .+|+.|+.+||++. +.|++++++.+.+.+.++++++++.|.+ . + ++|+...+ ..+++++|+.+ ||.+.
T Consensus 97 ~l~~-~dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~--~-g-~~dl~~~~~~~~~~~vi~~~-~G~~~ 169 (425)
T 2z3t_A 97 WLVF-LDPPHHTELRSLLT-TEFSPSIVTGLRPRIAELASALLDRLRA--Q-R-RPDLVEGFAAPLPILVISAL-LGIPE 169 (425)
T ss_dssp CGGG-CCHHHHHHHHHHHH-GGGSHHHHHHHHHHHHHHHHHHHHHHTT--S-S-SCBHHHHTTTHHHHHHHHHH-HTCCG
T ss_pred cccc-CCchHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHh--c-C-CccHHHHHHHHHHHHHHHHH-hCCCH
Confidence 4444 57999999999996 8999999999999999999999999865 2 3 79998755 68999999998 99887
Q ss_pred cCCchhHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCC
Q 040102 195 SINDKEADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPM 274 (308)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~ 274 (308)
+ ..+.+.+..+.+... .+.+| + .+...++..+..+.+.+++.++|++++++ ...
T Consensus 170 ~----~~~~~~~~~~~~~~~------~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~i~~r~~~-----------~~~ 223 (425)
T 2z3t_A 170 E----DHTWLRANAVALQEA------STTRA----R-DGRGYARAEAASQEFTRYFRREVDRRGGD-----------DRD 223 (425)
T ss_dssp G----GHHHHHHHHHHHHTT------CTTCC----C----HHHHHHHHHHHHHHHHHHHHCC------------------
T ss_pred H----HHHHHHHHHHHHHhh------ccccC----C-CHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------CCC
Confidence 3 223444443333211 11122 1 11123455667777888887777766431 246
Q ss_pred CHHHHHhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 275 DLLDMLLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 275 d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
|+++.|++..++ +..+|+++|.+++.++++|
T Consensus 224 dll~~ll~~~~~---~~~ls~~el~~~~~~l~~A 254 (425)
T 2z3t_A 224 DLLTLLVRARDT---GSPLSVDGIVGTCVHLLTA 254 (425)
T ss_dssp CHHHHHHHHHHT---TCCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhcc---CCCCCHHHHHHHHHHHHHh
Confidence 999999987543 2369999999999999875
No 59
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid biosynthesis, heme, iron, synthesis, lyase, metal-binding, oxylipin biosynthesis; HET: HEM T25; 1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Probab=99.83 E-value=7.2e-21 Score=178.29 Aligned_cols=162 Identities=13% Similarity=0.093 Sum_probs=123.1
Q ss_pred CCCCCCCCCCCCeeeecccC-----CCCchHHHHHHHHhcCC-eeEEecCCcCE-------EEecCHHHHHHHHHhcc--
Q 040102 31 TSSLPPSPMALPIIGHLHLL-----APIPHQALHKLSIRYGP-LIHLFLGSVPC-------IVACSPETAKEILKTHE-- 95 (308)
Q Consensus 31 ~~~~pPgP~~~PllGnl~~l-----~~~~~~~~~~~~~~yG~-i~~~~~g~~~~-------vvi~d~e~~~evl~~~~-- 95 (308)
..+.||||+|+|+|||++++ ..+++.++.++.++||+ ||++++|+.++ |++++++..+.++....
T Consensus 26 p~~~pPGp~g~P~iG~~~~~~~~~~~~~~~~f~~~~~~kyG~~Vf~~~l~~~~~vv~~p~~v~~~~~~~~~~l~~~~~v~ 105 (495)
T 3dsk_A 26 PIRNIPGNYGLPIVGPIKDRWDYFYDQGAEEFFKSRIRKYNSTVYRVNMPPGAFIAENPQVVALLDGKSFPVLFDVDKVE 105 (495)
T ss_dssp CBCCCCCCCCSTTHHHHHHHHHHHTTSCHHHHHHHHHHHHTCSEEEEECSCCTTTCSCCEEEEECSTTTGGGGGCTTTEE
T ss_pred CCCCCCCCCCCCccchHHHHHHHHHhcCcHHHHHHHHHHhCCceEeecCCCCCCccCCCCEEEEeCCcceeeeccccccc
Confidence 45679999999999999876 36788999999999999 99999999999 66677766665553311
Q ss_pred --ccccc-CCccccccccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCcee
Q 040102 96 --TSFCD-RPISAAVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVD 172 (308)
Q Consensus 96 --~~f~~-Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd 172 (308)
..|.. .|.. ...........++..+|+.|+.+|+++. +.|+... +.+.+.++++++++++.|.+...++.++|
T Consensus 106 k~~~~~~~~~~~--~~l~g~~~~~~~~~~~g~~h~~~R~~~~-~~f~~~~-~~~~~~i~~~~~~ll~~~~~~~~~~~~vd 181 (495)
T 3dsk_A 106 KKDLLTGTYMPS--TELTGGYRILSYLDPSEPKHEKLKNLLF-FLLKSSR-NRIFPEFQATYSELFDSLEKELSLKGKAD 181 (495)
T ss_dssp CSSCTTSSSCCC--GGGGTTCCCGGGCCTTSHHHHHHHHHHH-HHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHHHSSEE
T ss_pred ccccccccCCCC--ccccCCCcceeeeCCCchHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 22222 2322 2222211122334457999999999996 7888755 89999999999999999976433356899
Q ss_pred hHHHHHHHHHHHHHHHHhcCcccC
Q 040102 173 VGKELIRLTNNVVSRMTMGQICSI 196 (308)
Q Consensus 173 ~~~~~~~~t~~vi~~~~fG~~~~~ 196 (308)
+.+.+.+++++++++++||.+.+.
T Consensus 182 l~~~~~~~~~~~i~~~~~G~~~~~ 205 (495)
T 3dsk_A 182 FGGSSDGTAFNFLARAFYGTNPAD 205 (495)
T ss_dssp SHHHHHHHHHHHHHHHHHSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHcCCCcch
Confidence 999999999999999999998743
No 60
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A {Streptomyces natalensis} PDB: 2x9p_A*
Probab=99.82 E-value=6.9e-19 Score=161.01 Aligned_cols=208 Identities=12% Similarity=0.137 Sum_probs=153.9
Q ss_pred CCCCchHHHHHHHHhcCCeeEEec-CCcCEEEecCHHHHHHHHHhcccccccCCccc-cccccccCCcce-EeccCC---
Q 040102 50 LAPIPHQALHKLSIRYGPLIHLFL-GSVPCIVACSPETAKEILKTHETSFCDRPISA-AVDYLTYGSADF-SFAPYG--- 123 (308)
Q Consensus 50 l~~~~~~~~~~~~~~yG~i~~~~~-g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~-~~~~~~~~~~~~-~~~~~g--- 123 (308)
+..+++..+.+| ++||||+++++ |++++++++||+++++||.++ .|++++... ....... +.+. ++..+|
T Consensus 24 ~~~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~-~~~~~l~~~~g~~~ 99 (404)
T 2xbk_A 24 KMLKLSPLLRAL-QDRGPIHRVRTPAGDEAWLVTRHAELKQLLHDE--RIGRTHPDPPSAAQYVR-SPFLDLLISDADAE 99 (404)
T ss_dssp BTTBCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHTTCT--TEESBCSSGGGSCCSSC-CHHHHTTCBCSCHH
T ss_pred cccCccHHHHHH-HhhCCEeeeccCCCceEEEEcCHHHHHHHHcCC--CCCCCccccccCCcccc-cccccceeeCCCCC
Confidence 346788999999 89999999997 899999999999999999764 477776432 1122111 2231 344579
Q ss_pred ---hhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHH-HHHHHHHHHHHHhcCcccCCch
Q 040102 124 ---PYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQICSINDK 199 (308)
Q Consensus 124 ---~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~ 199 (308)
+.|+++||++. +.|++++++.+.+.+.++++++++.|.+ .+.++|+...+ ..+++++|+. +||.+.+
T Consensus 100 ~~~~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~---~g~~~d~~~~~~~~~~~~vi~~-~~G~~~~---- 170 (404)
T 2xbk_A 100 SGRRQHAETRRLLT-PLFSARRVLEMQPKVEEAADTLLDAFIA---QGPPGDLHGELTVPFALTVLCE-VIGVPPQ---- 170 (404)
T ss_dssp HHHHHHHHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHHHHH---TCSSEEHHHHTHHHHHHHHHHH-HHTCCGG----
T ss_pred CCCchHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCeeHHHHHHHHHHHHHHHH-HhCCCHH----
Confidence 99999999996 8999999999999999999999999975 25689998776 5699999997 7998763
Q ss_pred hHHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCHHHH
Q 040102 200 EADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPMDLLDM 279 (308)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~d~l~~ 279 (308)
..+.+.+..+.+ .. . . .++ +..++.+.+.+++.++|+++++. ...|+++.
T Consensus 171 ~~~~~~~~~~~~---~~-~-----------~-~~p---~~~~~~~~~~~~~~~~i~~r~~~-----------~~~dll~~ 220 (404)
T 2xbk_A 171 RRAELTTLLAGI---AK-L-----------D-DRE---GAVRAQDDLFGYVAGLVEHKRAE-----------PGPDIISR 220 (404)
T ss_dssp GHHHHHHHHHHH---TB-S-----------S-CHH---HHHHHHHHHHHHHHHHHHHHHHS-----------CCSSHHHH
T ss_pred HHHHHHHHHHHH---Hh-c-----------c-CcH---HHHHHHHHHHHHHHHHHHHHHhC-----------CCCCHHHH
Confidence 223444433321 11 0 0 011 45566778888888888877532 24599999
Q ss_pred HhhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 280 LLDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 280 ll~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
| + + + .+|+++|.+++.++++|
T Consensus 221 l-~---~---~-~ls~~ei~~~~~~l~~A 241 (404)
T 2xbk_A 221 L-N---D---G-ELTEDRVAHLAMGLLFA 241 (404)
T ss_dssp H-H---S---S-SCCHHHHHHHHHHHHHH
T ss_pred h-h---c---C-CCCHHHHHHHHHHHHHh
Confidence 8 2 1 2 69999999999999875
No 61
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A {Novosphingobium aromaticivorans} PDB: 3ofu_A*
Probab=99.82 E-value=2.2e-19 Score=163.75 Aligned_cols=211 Identities=11% Similarity=0.089 Sum_probs=154.4
Q ss_pred CCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCccccccccccCCcceEeccCChhhhhhh
Q 040102 51 APIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAVDYLTYGSADFSFAPYGPYWKFMK 130 (308)
Q Consensus 51 ~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~R 130 (308)
..+|+..+.+|.++ |||+++.+|+ +.++++||+++++++.+ ...|++++...........+ ..++..+|+.|+++|
T Consensus 23 ~~~p~~~~~~l~~~-Gpv~~~~~~~-~~~vv~~~~~v~~vl~~-~~~f~~~~~~~~~~~~~~~~-~~~~~~~g~~h~~~R 98 (396)
T 3oft_A 23 EQDYFAAWKTLLDG-PGLVWSTANG-GHWIAARGDVVRELWGD-AERLSSQCLAVTPGLGKVMQ-FIPLQQDGAEHKAFR 98 (396)
T ss_dssp TTCHHHHHHGGGGS-CSEEEECSTT-SEEEECSHHHHHHHHHC-TTTEESTTCCSSTTHHHHHC-CTTTTCCHHHHHHHH
T ss_pred hcChHHHHHHHHhc-CCeeeecCCC-CEEEEcCHHHHHHHHcC-cccccCCcccCCCccccccc-cCccccCCcHHHHHH
Confidence 46789999999998 9999999984 69999999999999954 46898887422211111111 234556899999999
Q ss_pred hHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHH-HHHHHHHHHHHHhcCcccCCchhHHHHHHHHH
Q 040102 131 KLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQICSINDKEADEVRKLVQ 209 (308)
Q Consensus 131 r~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~ 209 (308)
|++. +.|++++++.+.+.+.++++++++.|.+ +.++|+...+ ..++.++++. +||.+.+ ..+.+.+...
T Consensus 99 ~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~----~~~~d~~~~~~~~~~~~v~~~-~~G~~~~----~~~~~~~~~~ 168 (396)
T 3oft_A 99 TPVM-KGLASRFVVALEPKVQAVARKLMESLRP----RGSCDFVSDFAEILPLNIFLT-LIDVPLE----DRPRLRQLGV 168 (396)
T ss_dssp HHHH-HHTCHHHHHHHHHHHHHHHHHHHHHHGG----GSEEEHHHHTTTTHHHHHHHH-HTTCCGG----GHHHHHHHHH
T ss_pred HHhh-hhhCHHHHHHHHHHHHHHHHHHHHHhhh----cCCccHHHHHHHHHHHHHHHH-HcCCCHH----HHHHHHHHHH
Confidence 9996 8999999999999999999999999875 2468887666 5577777776 6897652 2334444333
Q ss_pred HHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCHHHHHhhccccccc
Q 040102 210 ETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPMDLLDMLLDISEDESS 289 (308)
Q Consensus 210 ~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~ 289 (308)
.+. ... + .++..+..+.+.+++.++|++++++ ...|+++.|++..+++
T Consensus 169 ~~~---~~~---------------~-~~~~~~~~~~~~~~~~~~i~~r~~~-----------~~~d~l~~ll~~~~~~-- 216 (396)
T 3oft_A 169 QLT---RPD---------------G-SMTVEQLKQAADDYLWPFIEKRMAQ-----------PGDDLFSRILSEPVGG-- 216 (396)
T ss_dssp HHH---SCC---------------S-SCCHHHHHHHHHHHHHHHHHHHHHS-----------CCSSHHHHHHTSCBTT--
T ss_pred HHh---CCC---------------C-HHHHHHHHHHHHHHHHHHHHHHHhC-----------CCCCHHHHHHHhhccC--
Confidence 321 100 0 1233556778888888888887642 3569999999886532
Q ss_pred cCCCCHHHHHHHHHHHhcC
Q 040102 290 EIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 290 ~~~lt~~~i~~~~~~l~~A 308 (308)
..+|+++|.+++.++++|
T Consensus 217 -~~l~~~el~~~~~~l~~A 234 (396)
T 3oft_A 217 -RPWTVDEARRMCRNLLFG 234 (396)
T ss_dssp -BCCCHHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHH
Confidence 369999999999999875
No 62
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein, oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB: 3nc5_A* 3nc6_A* 3nc7_A*
Probab=99.82 E-value=9.4e-20 Score=168.63 Aligned_cols=216 Identities=12% Similarity=0.135 Sum_probs=145.6
Q ss_pred CCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCccccccccccCCcceEeccCChhhhhhhh
Q 040102 52 PIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAVDYLTYGSADFSFAPYGPYWKFMKK 131 (308)
Q Consensus 52 ~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr 131 (308)
.+|+..+.++ ++||||+++..++ +++|+||+++++||.++. .|++++......... + .+.++..+|+.|+++||
T Consensus 53 ~~p~~~~~~l-r~~gpv~~~~~~~--~~vv~~~~~v~~vl~~~~-~f~~~~~~~~~~~~~-~-~~~l~~~dg~~h~~~Rr 126 (441)
T 3nc3_A 53 NNPYAYFSQL-REEDPVHYEESID--SYFISRYHDVRYILQHPD-IFTTKSLVERAEPVM-R-GPVLAQMHGKEHSAKRR 126 (441)
T ss_dssp HCGGGTHHHH-HHHCSEEEETTTT--EEEECCHHHHHHHHHCTT-TEECCCTTSCCCCSC-C--------------CCHH
T ss_pred cChHHHHHHH-HhcCCEEEeCCCC--EEEEcCHHHHHHHhcCcc-ccccccccccccccc-C-CCccccCCcHHHHHHHH
Confidence 4677778777 5799999998776 899999999999997764 488887544433322 2 23345567999999999
Q ss_pred HHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHH-HHHHHHHHHHHHHHhcCcccCCchhHHHHHHHHHH
Q 040102 132 LCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGK-ELIRLTNNVVSRMTMGQICSINDKEADEVRKLVQE 210 (308)
Q Consensus 132 ~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~-~~~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~ 210 (308)
++. +.|++++++.+.+.+.++++++++.|.+ +.++|+.. ....+++++|+. +||.+.+ +.+.+.+..+.
T Consensus 127 ~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~----~~~~dl~~~~~~~~~~~vi~~-l~G~~~~----~~~~~~~~~~~ 196 (441)
T 3nc3_A 127 IVV-RSFIGDALDHLSPLIKQNAENLLAPYLE----RGKSDLVNDFGKTFAVCVTMD-MLGLDKR----DHEKISEWHSG 196 (441)
T ss_dssp HHH-HHHHHTHHHHHHHHHHHHHHHHHTTTTT----TTEEECCCCCHHHHHHHHHHH-HTTCCGG----GHHHHHHHHHH
T ss_pred HHH-hhcCHHHHHHHHHHHHHHHHHHHHHHHh----cCCCcHHHHHHHHHHHHHHHH-HcCCCHH----HHHHHHHHHHH
Confidence 995 8999999999999999999999988764 45788754 445699999998 5898762 23455555555
Q ss_pred HHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCHHHHHhhcccccccc
Q 040102 211 TAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPMDLLDMLLDISEDESSE 290 (308)
Q Consensus 211 ~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~ 290 (308)
+........ . .....++..+..+.+.+++.++|+++++ +...|+++.|++...++
T Consensus 197 ~~~~~~~~~----~-------~~~~~~~~~~~~~~l~~~~~~~i~~rr~-----------~~~~Dll~~Ll~~~~~~--- 251 (441)
T 3nc3_A 197 VADFITSIS----Q-------SPEARAHSLWCSEQLSQYLMPVIKERRV-----------NPGSDLISILCTSEYEG--- 251 (441)
T ss_dssp HHHHHHCSC----C-------CHHHHHHHHHHHHHHHHHHHHHHHHHTT-----------SCCSSHHHHHCC--------
T ss_pred HHHhccccc----C-------ChHHHHHHHHHHHHHHHHHHHHHHHHHh-----------CCCCCHHHHHHHhhccC---
Confidence 444332110 0 1112345566778888888888877642 13569999999876532
Q ss_pred CCCCHHHHHHHHHHHhcC
Q 040102 291 IKLTRENIKAFILDIFAA 308 (308)
Q Consensus 291 ~~lt~~~i~~~~~~l~~A 308 (308)
..+|+++|.+++.++++|
T Consensus 252 ~~ls~~el~~~~~~ll~A 269 (441)
T 3nc3_A 252 MALSDKDILALILNVLLA 269 (441)
T ss_dssp -CCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 369999999999998875
No 63
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta binding protein; HET: HEM; 2.47A {Micromonospora echinospora}
Probab=99.81 E-value=4.3e-19 Score=161.93 Aligned_cols=213 Identities=16% Similarity=0.178 Sum_probs=153.6
Q ss_pred CCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCccccc------cccccC-CcceEeccCCh
Q 040102 52 PIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAV------DYLTYG-SADFSFAPYGP 124 (308)
Q Consensus 52 ~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~------~~~~~~-~~~~~~~~~g~ 124 (308)
.+|+..+.++ ++||||++ + +.++++|+||++++++|.+ ..|++++..... ...... +.+++ ..+|+
T Consensus 13 ~~p~~~~~~l-~~yGpv~~-~--g~~~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~g~ 85 (397)
T 3buj_A 13 RDPYPSYHWL-LRHDPVHR-G--AHRVWYVSRFADVRAVLGD--ERFARTGIRRFWTDLVGPGLLAEIVGDIIL-FQDEP 85 (397)
T ss_dssp HCCHHHHHHH-HHHCSEEE-C--GGGCEEECSHHHHHHHHTC--TTEESHHHHHHHHHHHCSSHHHHHHTTCGG-GCCTT
T ss_pred cCchHHHHHH-HhcCCeee-C--CCCeEEEcCHHHHHHHHcC--CCcccCcccccccccccccccccccccccc-cCCch
Confidence 4678888877 58999999 7 4899999999999999975 467776532100 011110 23444 45799
Q ss_pred hhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHH-HHHHHHHHHHHHhcCcccCCchhHHH
Q 040102 125 YWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQICSINDKEADE 203 (308)
Q Consensus 125 ~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~~~ 203 (308)
.|+.+||++. +.|++++++.+.+.+.++++++++.|.+ ++++|+...+ ..+++++|+.+ ||.+.+ ..+.
T Consensus 86 ~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~----~~~~dl~~~~~~~~~~~vi~~~-~G~~~~----~~~~ 155 (397)
T 3buj_A 86 DHGRLRGVVG-PAFSPSALRRLEPVIAGTVDDLLRPALA----RGAMDVVDELAYPLALRAVLGL-LGLPAA----DWGA 155 (397)
T ss_dssp HHHHHHHHHG-GGSSTTTTGGGHHHHHHHHHHHHHHHHT----TTEEEHHHHTHHHHHHHHHHHH-HTCCGG----GHHH
T ss_pred hHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHHhh----cCCeehHHHHHHHhHHHHHHHH-hCCCHH----HHHH
Confidence 9999999996 8999999999999999999999999875 3479987555 68999999998 999873 2234
Q ss_pred HHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCHHHHHhhc
Q 040102 204 VRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPMDLLDMLLDI 283 (308)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~d~l~~ll~~ 283 (308)
+.+..+.+..... +. + ++...++..+..+.+.+++.++|+++++. ...|+++.|++.
T Consensus 156 ~~~~~~~~~~~~~--------~~---~-~~~~~~~~~~~~~~~~~~~~~~i~~r~~~-----------~~~dll~~ll~~ 212 (397)
T 3buj_A 156 VGRWSRDVGRTLD--------RG---A-SAEDMRRGHAAIAEFADYVERALARRRRE-----------GGEDLLALMLDA 212 (397)
T ss_dssp HHHHHHHHHGGGC--------SS---C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------CCCSHHHHHHHH
T ss_pred HHHHHHHHHhhcC--------CC---C-ChHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHh
Confidence 4444443322211 00 1 11223556677788888899988887642 245999999987
Q ss_pred cccccccCCCCHHHHHHHHHHHhcC
Q 040102 284 SEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 284 ~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
.++ +. +|+++|.+++.++++|
T Consensus 213 ~~~---~~-ls~~ei~~~~~~~~~A 233 (397)
T 3buj_A 213 HDR---GL-MSRNEIVSTVVTFIFT 233 (397)
T ss_dssp HHT---TS-SCHHHHHHHHHHHHHH
T ss_pred hhc---CC-CCHHHHHHHHHHHHHc
Confidence 532 22 9999999999999875
No 64
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A {Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Probab=99.81 E-value=2.7e-19 Score=164.09 Aligned_cols=212 Identities=13% Similarity=0.119 Sum_probs=153.9
Q ss_pred CCCchHHHHHHHHhcCCeeEEecCC--cCEEEecCHHHHHHHHHhcccccccCCcccc----ccccccC-CcceEeccCC
Q 040102 51 APIPHQALHKLSIRYGPLIHLFLGS--VPCIVACSPETAKEILKTHETSFCDRPISAA----VDYLTYG-SADFSFAPYG 123 (308)
Q Consensus 51 ~~~~~~~~~~~~~~yG~i~~~~~g~--~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~----~~~~~~~-~~~~~~~~~g 123 (308)
+..+|..+.++. +||||+++++++ ++.+++++|+++++||.+ ..|++++.... ...+... +.++ +..+|
T Consensus 26 g~~p~~~~~~l~-~~Gpv~~~~~~~g~~~~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~~~~~~l-~~~dg 101 (411)
T 2dkk_A 26 GPEFDPVLAELM-REGPLTRVRLPHGEGWAWLATRYDDVKAITND--PRFGRAEVTQRQITRLAPHFKPRPGSL-AFADQ 101 (411)
T ss_dssp SSCCCHHHHHHH-TTCSEEEEECSBSBSCEEEECSHHHHHHHTTC--TTEESGGGGGSCBCBSSSCCCCCTTCS-TTCCT
T ss_pred cccccHHHHHHH-hcCCeEeeecCCCceeEEEEcCHHHHHHHHcC--CCcccCCCCCCCccccccchhcccccc-ccCCc
Confidence 356779999997 799999999865 899999999999999976 36877654321 1111110 2334 45689
Q ss_pred hhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHH-HHHHHHHHHHHhcCcccCCchhHH
Q 040102 124 PYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELI-RLTNNVVSRMTMGQICSINDKEAD 202 (308)
Q Consensus 124 ~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~-~~t~~vi~~~~fG~~~~~~~~~~~ 202 (308)
+.|+++||++. +.|++++++.+.+.+.++++++++.|.+. +.++|+...+. .+++++|+. +||.+.+ ..+
T Consensus 102 ~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~---g~~~dl~~~~~~~~~~~vi~~-l~G~~~~----~~~ 172 (411)
T 2dkk_A 102 PDHNRLRRAVA-GAFTVGATKRLRPRAQEILDGLVDGILAE---GPPADLVERVLEPFPIAVVSE-VMGVPAA----DRE 172 (411)
T ss_dssp THHHHHHHHHG-GGSSHHHHHHHHHHHHHHHHHHHHHHHHH---CSCEEHHHHTTTHHHHHHHHH-HHTCCSS----HHH
T ss_pred hHHHHHHHHhh-HhhCHHHHHHHHHHHHHHHHHHHHHHHhc---CCCeehHHHHHHHHHHHHHHH-HhCCCHH----HHH
Confidence 99999999996 89999999999999999999999999762 45799998876 699999998 5998763 222
Q ss_pred HHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCHHHHHhh
Q 040102 203 EVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPMDLLDMLLD 282 (308)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~d~l~~ll~ 282 (308)
.+.+..+. ... ..+ . .++..++.+.+.+++.++|+++++ +...|+++.|++
T Consensus 173 ~~~~~~~~----~~~-----~~~--------~-~~~~~~~~~~l~~~~~~~i~~r~~-----------~~~~dll~~ll~ 223 (411)
T 2dkk_A 173 RVHSWTRQ----IIS-----TSG--------G-AEAAERAKRGLYGWITETVRARAG-----------SEGGDVYSMLGA 223 (411)
T ss_dssp HHHHHHGG----GCS-----SCS--------C-SHHHHHHHHHHHHHHHHHHHTTTT-----------CCSSCHHHHHHH
T ss_pred HHHHHHHH----HHh-----ccc--------h-HHHHHHHHHHHHHHHHHHHHHHHh-----------CCCCCHHHHHHH
Confidence 33222211 110 111 1 234556677777888777766532 134699999998
Q ss_pred ccccccccCCCCHHHHHHHHHHHhcC
Q 040102 283 ISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 283 ~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
. ++ +..+|+++|.+++.++++|
T Consensus 224 ~-~~---~~~ls~~el~~~~~~l~~A 245 (411)
T 2dkk_A 224 A-VG---RGEVGETEAVGLAGPLQIG 245 (411)
T ss_dssp H-HH---TTSSCTTSHHHHHHHHHHT
T ss_pred h-cC---CCCCCHHHHHHHHHHHHHh
Confidence 7 32 2369999999999999876
No 65
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450 vancomycin, oxidoreductase; HET: HEM; 1.70A {Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A* 1lgf_A*
Probab=99.81 E-value=3.6e-19 Score=162.46 Aligned_cols=205 Identities=13% Similarity=0.175 Sum_probs=146.5
Q ss_pred HHHHHHHhcCCeeEEecC-Cc---CEEEecCHHHHHHHHHhcccccccCCc------ccc---ccccccCCcceEeccCC
Q 040102 57 ALHKLSIRYGPLIHLFLG-SV---PCIVACSPETAKEILKTHETSFCDRPI------SAA---VDYLTYGSADFSFAPYG 123 (308)
Q Consensus 57 ~~~~~~~~yG~i~~~~~g-~~---~~vvi~d~e~~~evl~~~~~~f~~Rp~------~~~---~~~~~~~~~~~~~~~~g 123 (308)
.+.+|+++ |||++++++ +. ++++++||++++++|+++ ..|++||. ... ..... .+.++ +..+|
T Consensus 18 ~~~~l~~~-Gpv~~~~~~~g~~~~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~l-~~~~g 93 (398)
T 1lfk_A 18 PADELLAA-GALTRVTIGSGADAETHWMATAHAVVRQVMGDH-QQFSTRRRWDPRDEIGGKGIFRPRE-LVGNL-MDYDP 93 (398)
T ss_dssp ECHHHHTS-CSEEEEC------CCCEEEECSHHHHHHHHHCT-TTEEECTTCCC-------------C-CTTCG-GGCCT
T ss_pred hhHHHHhc-CCccccccCCCCcccceEEEecHHHHHHHHhhC-cccccccccccccccCCcccccccc-cccCc-cccCC
Confidence 34557776 999999975 45 999999999999999544 35888875 111 11111 12344 44579
Q ss_pred hhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHH-HHHHHHHHHHhcCcccCCchhHH
Q 040102 124 PYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIR-LTNNVVSRMTMGQICSINDKEAD 202 (308)
Q Consensus 124 ~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~-~t~~vi~~~~fG~~~~~~~~~~~ 202 (308)
+.|+.+||++. +.|++++++.+.+.+.++++++++.|.+ .++++|+.+.+.. +++++|+. +||.+.+ ..+
T Consensus 94 ~~~~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~----~~~ 164 (398)
T 1lfk_A 94 PEHTRLRRKLT-PGFTLRKMQRMAPYIEQIVNDRLDEMER---AGSPADLIAFVADKVPGAVLCE-LVGVPRD----DRD 164 (398)
T ss_dssp THHHHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHHHHH---HCSSEEHHHHTTTTHHHHHHHH-HHTCCGG----GHH
T ss_pred HHHHHHHHHHH-hhhCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCccHHHHHHHHHHHHHHHH-HcCCCHH----HHH
Confidence 99999999996 7899999999999999999999999975 2568999999987 89999997 6998873 223
Q ss_pred HHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCHHHHHhh
Q 040102 203 EVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPMDLLDMLLD 282 (308)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~d~l~~ll~ 282 (308)
.+.+..+.+ . . .++..++..+..+.+.+++.++|+++++. ...|+++.|++
T Consensus 165 ~~~~~~~~~---~-~--------------~~~~~~~~~~~~~~~~~~~~~~i~~r~~~-----------~~~dll~~ll~ 215 (398)
T 1lfk_A 165 MFMKLCHGH---L-D--------------ASLSQKRRAALGDKFSRYLLAMIARERKE-----------PGEGMIGAVVA 215 (398)
T ss_dssp HHHHHHHHT---T-C--------------TTSCHHHHHHHHHHHHHHHHHHHHHHHHS-----------CCSSHHHHHHH
T ss_pred HHHHHHHHH---H-h--------------cccchHHHHHHHHHHHHHHHHHHHHHHhC-----------CCCCHHHHHHH
Confidence 344333221 1 0 01112456677788888888888877532 24599999998
Q ss_pred ccccccccCCCCHHHHHHHHHHHhcC
Q 040102 283 ISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 283 ~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
.. + + .+|+++|.+++.++++|
T Consensus 216 ~~-~---~-~l~~~el~~~~~~l~~A 236 (398)
T 1lfk_A 216 EY-G---D-DATDEELRGFCVQVMLA 236 (398)
T ss_dssp HH-G---G-GSCHHHHHHHHHHHHHH
T ss_pred hc-C---C-CCCHHHHHHHHHHHHHH
Confidence 75 2 1 69999999999999875
No 66
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein, vancomycin biosynthes carrier protein, oxidoreductase; HET: HEM; 2.10A {Amycolatopsis balhimycina}
Probab=99.80 E-value=3.4e-19 Score=163.63 Aligned_cols=212 Identities=12% Similarity=0.085 Sum_probs=153.3
Q ss_pred CCchHHHHHHHHhcCCeeEEe-cCC-cCEEEecCHHHHHHHHHhcccccccCCcccccccccc--CC-cceEeccCChhh
Q 040102 52 PIPHQALHKLSIRYGPLIHLF-LGS-VPCIVACSPETAKEILKTHETSFCDRPISAAVDYLTY--GS-ADFSFAPYGPYW 126 (308)
Q Consensus 52 ~~~~~~~~~~~~~yG~i~~~~-~g~-~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~~~~~~--~~-~~~~~~~~g~~W 126 (308)
.+|+..+.++.+ ||||+++. .|. .+++||+++++|++|| ++...|++++.......... .. ++.++..+|+.|
T Consensus 37 ~dp~~~~~~lr~-~gpV~~~~~~g~~~~~~vv~~~~~v~~vl-~~~~~fs~~~~~~~~~~~~~~~~~~~~~l~~~dg~~h 114 (415)
T 3mgx_A 37 LERHARWRELAA-EDAMVWSDPGSSPSGFWSVFSHRACAAVL-APSAPLTSEYGMMIGFDRDHPDNSGGRMMVVSEHEQH 114 (415)
T ss_dssp TTHHHHHHHHHH-HTCCEEECSSSSSSCEEEECSHHHHHHHS-CTTSSEECTTCSSTTCCSSSCCTTTTTSGGGCCHHHH
T ss_pred CChhHHHHHHHh-cCCEeeccCCCCcCCEEEEecHHHHHHHH-hChhhhcCCccccccccccccccccCCCccccCcHHH
Confidence 468899999987 99999997 554 8999999999999999 44567988875433221100 01 223455689999
Q ss_pred hhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHH-HHHHHHHHHHHHhcCcccCCchhHHHHH
Q 040102 127 KFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQICSINDKEADEVR 205 (308)
Q Consensus 127 k~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~~~~~ 205 (308)
+++||++. +.|++++++.+.+.+.++++++++.|.+ +.++|+...+ ..+++++|++ +||.+.+ ..+.+.
T Consensus 115 ~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~----~~~~dl~~~~~~~~~~~vi~~-l~G~~~~----~~~~~~ 184 (415)
T 3mgx_A 115 RKLRKLVG-PLLSRAAARKLAERVRIEVGDVLGRVLD----GEVCDAATAIGPRIPAAVVCE-ILGVPAE----DEDMLI 184 (415)
T ss_dssp HHHHHHHG-GGSSHHHHHHSHHHHHHHHHHHTTTSSS----SSCEESTTTTTTHHHHHHHHH-HHTCCGG----GHHHHH
T ss_pred HHHHHHhH-hhhCHHHHHHHHHHHHHHHHHHHHHHHh----cCCcchHHHHHHHHHHHHHHH-HcCCCHH----HHHHHH
Confidence 99999985 8999999999999999999999988754 3479998888 6799999998 5897652 234454
Q ss_pred HHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCHHHHHhhccc
Q 040102 206 KLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPMDLLDMLLDISE 285 (308)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~ 285 (308)
+..+.+. . .....+.| . ...++.+.+.+++.++|++++++ ...|+++.|++..
T Consensus 185 ~~~~~~~---~-~~~~~~~~-------~----~~~~~~~~l~~~~~~~i~~rr~~-----------~~~dll~~ll~~~- 237 (415)
T 3mgx_A 185 DLTNHAF---G-GEDELFDG-------M----TPRQAHTEILVYFDELITARRKE-----------PGDDLVSTLVTDD- 237 (415)
T ss_dssp HHHHHHT---S-CCC----C-------C----CHHHHHHHHHHHHHHHHHHHHHS-----------CCSSHHHHHHHCT-
T ss_pred HHHHHHH---c-ccCcccch-------H----HHHHHHHHHHHHHHHHHHHHHhC-----------CCCCHHHHHHhCC-
Confidence 4444321 1 11111111 1 11255677888888888887532 3469999999764
Q ss_pred cccccCCCCHHHHHHHHHHHhcC
Q 040102 286 DESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 286 ~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
.+|+++|.+++.++++|
T Consensus 238 ------~ls~~el~~~~~~ll~A 254 (415)
T 3mgx_A 238 ------DLTIDDVLLNCDNVLIG 254 (415)
T ss_dssp ------TSCHHHHHHHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHHHHh
Confidence 48999999999999875
No 67
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase, oxidoreductase; HET: HEM; 2.00A {Sphingopyxis macrogoltabida}
Probab=99.78 E-value=1.1e-17 Score=154.02 Aligned_cols=218 Identities=11% Similarity=0.004 Sum_probs=152.9
Q ss_pred CCchHHHHHHHHhcCCeeEEec-CCcCEEEecCHHHHHHHHHhcccccccCCc---ccccc-----ccccCCcceEeccC
Q 040102 52 PIPHQALHKLSIRYGPLIHLFL-GSVPCIVACSPETAKEILKTHETSFCDRPI---SAAVD-----YLTYGSADFSFAPY 122 (308)
Q Consensus 52 ~~~~~~~~~~~~~yG~i~~~~~-g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~---~~~~~-----~~~~~~~~~~~~~~ 122 (308)
.+|+..+.++.++ |||+++.+ ++.++++|++++.|+++|.+. ..|++++. ..... .......+.++..+
T Consensus 38 ~~p~~~~~~lr~~-gpv~~~~~~~~~~~~vvt~~~~v~~vl~d~-~~fs~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 115 (426)
T 3rwl_A 38 DSVGEYFKRLRKD-DPVHYCADSAFGPYWSITKYNDIMHVDTNH-DIFSSDAGYGGIIIDDGIQKGGDGGLDLPNFIAMD 115 (426)
T ss_dssp TCHHHHHHHHHHH-CSEEEESCCTTCSEEEECSHHHHHHHHHCT-TTEECCGGGTCSSSSCCC-------CCCCCGGGCC
T ss_pred CCccHHHHHHHhc-CCeeeccCCCCCCEEEEcCHHHHHHHHcCC-cccccccccCCCCcccccccccccccccCcccccC
Confidence 4588899999875 99999987 568899999999999999664 56777652 11111 00000112345568
Q ss_pred ChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHH-HHHHHHHHHHHHhcCcccCCchhH
Q 040102 123 GPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQICSINDKEA 201 (308)
Q Consensus 123 g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~ 201 (308)
|+.|+.+||++. +.|++++++.+.+.+.++++++++.|.. +.++|+...+ ..+++++++. +||.+.+. .
T Consensus 116 g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~----~~~~dl~~~~~~~~~~~vi~~-l~G~~~~~----~ 185 (426)
T 3rwl_A 116 RPRHDEQRKAVS-PIVAPANLAALEGTIRERVSKTLDGLPV----GEEFDWVDRVSIEITTQMLAT-LFDFPFEE----R 185 (426)
T ss_dssp TTHHHHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHTSCS----SSCEEHHHHTHHHHHHHHHHH-HHTCCGGG----T
T ss_pred chHHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHhhc----CCCcchHHHHHHHHHHHHHHH-HcCCCHHH----H
Confidence 999999999985 8999999999999999999999988732 5689987777 6788888886 89986522 2
Q ss_pred HHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCHHHHHh
Q 040102 202 DEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPMDLLDMLL 281 (308)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~d~l~~ll 281 (308)
+.+.+..+ ..... . .|. .....++..+..+.+.+++.++++++++ . +...|+++.|+
T Consensus 186 ~~~~~~~~----~~~~~--~--~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~r~~-------~---~~~~dll~~ll 242 (426)
T 3rwl_A 186 RKLTRWSD----VTTAA--P--GGG-----VVESWDQRKTELLECAAYFQVLWNERVN-------K---DPGNDLISMLA 242 (426)
T ss_dssp HHHHHHHH----HHTCC--T--TSS-----SCSSHHHHHHHHHHHHHHHHHHHHHHHT-------S---CCCSSHHHHHH
T ss_pred HHHHHHHH----HHHhc--c--Ccc-----ccccHHHHHHHHHHHHHHHHHHHHHHhh-------c---CCCCCHHHHHH
Confidence 33333222 11110 0 011 1112344556678888888888887731 1 24579999999
Q ss_pred hccccccccCCCCHHHHHHHHHHHhcC
Q 040102 282 DISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 282 ~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
+..+++ .+|+++|.+++.++++|
T Consensus 243 ~~~~~~----~ls~~el~~~~~~l~~A 265 (426)
T 3rwl_A 243 HSPATR----NMTPEEYLGNVLLLIVG 265 (426)
T ss_dssp HCGGGG----GCCHHHHHHHHHHHHHH
T ss_pred hcccCC----CCCHHHHHHHHHHHHHH
Confidence 886432 58999999999999875
No 68
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM; 1.80A {Parthenium argentatum} PDB: 3dam_A* 3dbm_A*
Probab=99.77 E-value=6.2e-19 Score=164.03 Aligned_cols=163 Identities=9% Similarity=0.053 Sum_probs=117.5
Q ss_pred CCCCCCCCCCCCeeeecccC-----CC-CchHHHHHHHHhcCC-eeEEecCCcCEEEe-------cCHHHHHHHHH----
Q 040102 31 TSSLPPSPMALPIIGHLHLL-----AP-IPHQALHKLSIRYGP-LIHLFLGSVPCIVA-------CSPETAKEILK---- 92 (308)
Q Consensus 31 ~~~~pPgP~~~PllGnl~~l-----~~-~~~~~~~~~~~~yG~-i~~~~~g~~~~vvi-------~d~e~~~evl~---- 92 (308)
..+.+|||+++|++||++++ .. +++.++.++.++||+ ||++++++.++|++ +|.+..+.++.
T Consensus 7 Pl~~iPGp~g~P~iG~~~~~~~~~~~~g~~~~~~~~~~~kyG~~vf~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~~~ 86 (473)
T 3dan_A 7 PLREIPGSYGIPFFQPIKDRLEYFYGTGGRDEYFRSRMQKYQSTVFRANMPPGPFVSSNPKVIVLLDAKSFPILFDVSKV 86 (473)
T ss_dssp CBCCCCCCCCSTTHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSEEEEECTTCTTTCSCCEEEEECSTTTGGGGGCTTTE
T ss_pred CCCCCCCCCCCcchhhHHHHHHHHHhhcCchHHHHhHHHHhCCeEEEecCCCCCccccCCceEEeecccccceecCCcce
Confidence 34568999999999999875 35 788999999999999 99999986655443 34333333332
Q ss_pred hcccccccCCccccccccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCcee
Q 040102 93 THETSFCDRPISAAVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVD 172 (308)
Q Consensus 93 ~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd 172 (308)
++...+.++.. .............++..+|+.|+.+||++. +.|+++ ++.+.+.++++++++++.|.+...++.++|
T Consensus 87 ~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~h~~~R~~~~-~~f~~~-~~~~~~~i~~~~~~ll~~~~~~~~~~~~vd 163 (473)
T 3dan_A 87 EKKDLFTGTYM-PSTKLTGGYRVLSYLDPSEPRHAQLKNLLF-FMLKNS-SNRVIPQFETTYTELFEGLEAELAKNGKAA 163 (473)
T ss_dssp ECSSCTTSSSC-CCGGGGTTSCCGGGCCTTSHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHSCEE
T ss_pred ecccccccccc-CCccccCCCcceeeeCCCcHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 12222222211 111222111122334467999999999996 789984 899999999999999999976433356899
Q ss_pred hHHHHHHHHHHHHHHHHhcCcccC
Q 040102 173 VGKELIRLTNNVVSRMTMGQICSI 196 (308)
Q Consensus 173 ~~~~~~~~t~~vi~~~~fG~~~~~ 196 (308)
+.+.+.+++++++++++||.+.+.
T Consensus 164 l~~~~~~~~~~~i~~~~~G~~~~~ 187 (473)
T 3dan_A 164 FNDVGEQAAFRFLGRAYFNSNPEE 187 (473)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCc
Confidence 999999999999999999998854
No 69
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450 fold, structural genomics, PSI, protein structure initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A* 3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Probab=99.76 E-value=4.3e-18 Score=155.25 Aligned_cols=211 Identities=10% Similarity=0.098 Sum_probs=148.4
Q ss_pred CCCCchHHHHHHHHhcCCeeEEec-CCcCEEEecCHHHHHHHHHhcccccc-c-CCcc--cccc--cccc-CCcceEecc
Q 040102 50 LAPIPHQALHKLSIRYGPLIHLFL-GSVPCIVACSPETAKEILKTHETSFC-D-RPIS--AAVD--YLTY-GSADFSFAP 121 (308)
Q Consensus 50 l~~~~~~~~~~~~~~yG~i~~~~~-g~~~~vvi~d~e~~~evl~~~~~~f~-~-Rp~~--~~~~--~~~~-~~~~~~~~~ 121 (308)
+..+++..+.+| ++||||+++++ |++++++++||++++++|.++ .|+ + ++.. .... .+.. .+.+++++
T Consensus 14 ~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 89 (396)
T 1n40_A 14 RGDRIPDAVAEL-RTREPIRKVRTITGAEAWLVSSYALCTQVLEDR--RFSMKETAAAGAPRLNALTVPPEVVNNMGNI- 89 (396)
T ss_dssp CSSSCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHHTCT--TEESGGGGSTTCCCSSCCSSCGGGGGHHHHH-
T ss_pred cccCccHHHHHH-HHhCCeeEeecCCCceEEEEecHHHHHHHHhCC--CcccccCccccccccccccCCchhhhhhhhH-
Confidence 446789999999 99999999997 899999999999999999865 476 5 5532 1111 1111 12233332
Q ss_pred CChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHH-HHHHHHHHHHHhcCcccCCchh
Q 040102 122 YGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELI-RLTNNVVSRMTMGQICSINDKE 200 (308)
Q Consensus 122 ~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~-~~t~~vi~~~~fG~~~~~~~~~ 200 (308)
.|+++||++. +.|+++ ++.+.+.+.++++++++.|.+ . ++++|+...+. .+++++|+. +||.+.+ +
T Consensus 90 ---~h~~~R~~~~-~~fs~~-~~~~~~~i~~~~~~l~~~l~~--~-~~~~d~~~~~~~~~~~~vi~~-~~G~~~~----~ 156 (396)
T 1n40_A 90 ---ADAGLRKAVM-KAITPK-APGLEQFLRDTANSLLDNLIT--E-GAPADLRNDFADPLATALHCK-VLGIPQE----D 156 (396)
T ss_dssp ---HHTTCHHHHH-HHTSSC-STTHHHHHHHHHHHHHHHHHH--H-CSCEETTTTTHHHHHHHHHHH-HHTCCGG----G
T ss_pred ---HHHHHHHHHH-HhhChH-HHHhHHHHHHHHHHHHHHHHh--c-CCCccHHHHHHHHhHHHHHHH-HhCCChh----h
Confidence 9999999996 789999 999999999999999999976 2 56899986664 899999998 8999873 2
Q ss_pred HHHHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCHHHHH
Q 040102 201 ADEVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPMDLLDML 280 (308)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~d~l~~l 280 (308)
.+++.+..+.+. ... . ..| .++..+..+.+ +++.++|+ + . ....|+++.|
T Consensus 157 ~~~~~~~~~~~~---~~~--~-~~p----------~~~~~~~~~~~-~~~~~~i~------~----~---~~~~dll~~l 206 (396)
T 1n40_A 157 GPKLFRSLSIAF---MSS--A-DPI----------PAAKINWDRDI-EYMAGILE------N----P---NITTGLMGEL 206 (396)
T ss_dssp HHHHHHTHHHHT---BCC--S-SCC----------HHHHHHHHHHH-HHHHHHHH------C----T---TCCSHHHHHH
T ss_pred HHHHHHHHHHHh---ccc--c-CCC----------HHHHHHHHHHH-HHHHHHHh------C----C---CCCCCHHHHH
Confidence 234444433321 100 0 011 13445555566 66666665 1 1 1356999999
Q ss_pred hhccccccccCCCCHHHHHHHHHHHhcC
Q 040102 281 LDISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 281 l~~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
++...+.+ +..+|+++|.+++.++++|
T Consensus 207 l~~~~~~~-~~~l~~~~i~~~~~~~~~A 233 (396)
T 1n40_A 207 SRLRKDPA-YSHVSDELFATIGVTFFGA 233 (396)
T ss_dssp HHHHTSGG-GTTSCHHHHHHHHHHHHHH
T ss_pred HHhhcccc-cCCCCHHHHHHHHHHHHHH
Confidence 98752201 2369999999999999875
No 70
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A {Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Probab=99.75 E-value=1.6e-18 Score=159.18 Aligned_cols=217 Identities=11% Similarity=0.088 Sum_probs=149.9
Q ss_pred CCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCcccc----ccccccCCcceEeccCChhh
Q 040102 51 APIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAA----VDYLTYGSADFSFAPYGPYW 126 (308)
Q Consensus 51 ~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~----~~~~~~~~~~~~~~~~g~~W 126 (308)
..+|+.. ++.++|||++++++|+.. ++|+++++|++||.++...+..++.... .........+.++..+|+.|
T Consensus 32 ~~~P~~~--~~lr~~gpv~~~~~g~~~-~vv~~~~~v~~vL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dg~~h 108 (416)
T 3p3o_A 32 PNFSWDS--PEVAEAREKSWIARTPLA-LLVLRYAEADQLARDKRLISGFRGLVDMVGTPEGPVRDFMVDFLQSLDGADH 108 (416)
T ss_dssp TTCCTTS--HHHHHHHHHCSEEECSSS-EEECSHHHHHHHHHCTTEECSHHHHHHHHTCCSSHHHHHHHHSGGGCCHHHH
T ss_pred ccCCchH--HHHHHhCCccccccCCCc-eEEeCHHHHHHHHcCcccccCCccccccccccccchhhhhcCccccCCchHH
Confidence 3567766 555679999999998877 9999999999999776432222211000 00000000123455689999
Q ss_pred hhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHH-HHHHHHHHHHHHhcCcccCCchhHHHHH
Q 040102 127 KFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQICSINDKEADEVR 205 (308)
Q Consensus 127 k~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~~~~~ 205 (308)
+++||+++ +.|++++++.+.+.+.++++.+++.+ . +.++|+...+ ..+++++|+. +||.+.+ ..+.+.
T Consensus 109 ~~~Rr~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l-~----~g~~d~~~~~~~~~~~~vi~~-l~G~~~~----~~~~~~ 177 (416)
T 3p3o_A 109 RRLRGLAT-HPFTPRRITAVQPFVRSTVEQLIDKL-P----QGDFDFVQHFPHPLPALVMCQ-LLGFPLE----DYDTVG 177 (416)
T ss_dssp HHHHHTTC-GGGSHHHHHHHHHHHHHHHHHHHHTC-C----SSSEEHHHHTTTHHHHHHHHH-HHTCCGG----GHHHHH
T ss_pred HHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHhh-c----cCCccHHHHHHHHHHHHHHHH-HhCCCHH----HHHHHH
Confidence 99999996 89999999999999999999999998 3 2359976555 5699999998 5898762 223333
Q ss_pred HHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCHHHHHhhccc
Q 040102 206 KLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPMDLLDMLLDISE 285 (308)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~ 285 (308)
+..+.+.. .+... ......++..++.+.+.+++.++|+++++. ...|+++.|++...
T Consensus 178 ~~~~~~~~---------~~~~~---~~~~~~~~~~~~~~~l~~~~~~~i~~rr~~-----------~~~dll~~ll~~~~ 234 (416)
T 3p3o_A 178 RLSIETNL---------GLALS---NDQDILVKVEQGLGRMFDYLVAAIEKRKVE-----------PGDDLTSDIVRAFH 234 (416)
T ss_dssp HHHHTTCG---------GGTTC---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----------CCSSHHHHHHHHHH
T ss_pred HHHHHHHh---------hcccc---cchhhHHHHHHHHHHHHHHHHHHHHHHHhC-----------CCccHHHHHHHhhc
Confidence 32222111 11110 012234567778888999999999887632 35699999998764
Q ss_pred cccccCCCCHHHHHHHHHHHhcC
Q 040102 286 DESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 286 ~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
+ + .+|+++|++++.++++|
T Consensus 235 ~---~-~ls~~el~~~~~~l~~A 253 (416)
T 3p3o_A 235 D---G-VLDDYELRTLVATVLVA 253 (416)
T ss_dssp T---T-SSCHHHHHHHHHHHHHH
T ss_pred c---C-CCCHHHHHHHHHHHHHh
Confidence 3 2 69999999999999875
No 71
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Probab=99.74 E-value=2.2e-17 Score=149.07 Aligned_cols=199 Identities=13% Similarity=0.081 Sum_probs=141.8
Q ss_pred chHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCccc--cc-----c-ccccC--CcceEeccCC
Q 040102 54 PHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISA--AV-----D-YLTYG--SADFSFAPYG 123 (308)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~--~~-----~-~~~~~--~~~~~~~~~g 123 (308)
|+..+.++. +||||++++ | +++++||+++++||.++ +.|++++... .. . .+... ..++++ .+|
T Consensus 1 p~~~~~~lr-~~gpv~~~~-g---~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~dg 73 (367)
T 3b4x_A 1 MYDWFKQMR-KESPVYYDG-K---VWNLFKYEDCKMVLNDH-KRFSSNLTGYNDKLEMLRSGKVFFDIPTRYTMLT-SDP 73 (367)
T ss_dssp CHHHHHHHH-HHCSEEECS-S---SEEECSHHHHHHHHHCT-TTEECCCSSTTTTHHHHHHTCCCCCCGGGSSGGG-CCT
T ss_pred CCHHHHHHH-HcCCceeeC-C---EEEEecHHHHHHHHcCc-hhhccCcccccccccccccccchhhccccccccc-CCc
Confidence 466788885 799999998 5 89999999999999875 5788885321 11 1 22110 134444 579
Q ss_pred hhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHH-HHHHHHHHHHHHhcCcccCCchhHH
Q 040102 124 PYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQICSINDKEAD 202 (308)
Q Consensus 124 ~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~~ 202 (308)
+.|+.+||++. +.|++++++. +.+.++++++++.|. + ++|+...+ ..+++++|+. +||.+ + +.+
T Consensus 74 ~~h~~~R~~~~-~~fs~~~l~~--~~i~~~~~~l~~~l~-----g-~~d~~~~~~~~~~~~vi~~-~~G~~-~----~~~ 138 (367)
T 3b4x_A 74 PLHDELRNLTA-DAFNPSNLPV--DFVREVTVKLLSELD-----E-EFDVIESFAIPLPILVISK-MLGIN-P----DVK 138 (367)
T ss_dssp THHHHHHHTTG-GGGSGGGSCH--HHHHHHHHHHHHTCC-----S-EEEHHHHTTTHHHHHHHHH-HHTCC-C----CHH
T ss_pred hhHHHHHHHHH-HhcCHhhhcc--hHHHHHHHHHHHhcc-----C-CcchHHHHHHhhHHHHHHH-HcCCC-C----cHH
Confidence 99999999996 8999999988 889899999988765 3 49999766 7999999999 79998 4 233
Q ss_pred HHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCHHHHHhh
Q 040102 203 EVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPMDLLDMLLD 282 (308)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~d~l~~ll~ 282 (308)
.+.+..+.+..... ..|.. . ++. +..+.+.+++.++|+++++ +...|+++.|++
T Consensus 139 ~~~~~~~~~~~~~~------~~p~~--~------~~~-~~~~~~~~~~~~~i~~r~~-----------~~~~dll~~ll~ 192 (367)
T 3b4x_A 139 KVKDWSDLVALRLG------RADEI--F------SIG-RKYLELISFSKKELDSRKG-----------KEIVDLTGKIAN 192 (367)
T ss_dssp HHHHHHHHHHTTTT------STTGG--G------CCC-HHHHHHHHHHHHHHHHHTT-----------TCCSSHHHHHHT
T ss_pred HHHHHHHHHHhccC------CChhh--H------HHH-HHHHHHHHHHHHHHHHHhc-----------CCCCCHHHHHHh
Confidence 45554444322211 12211 0 111 4566777788888876642 134699999996
Q ss_pred ccccccccCCCCHHHHHHHHHHHhcC
Q 040102 283 ISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 283 ~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
. .+|+++|.+++.++++|
T Consensus 193 ~--------~ls~~el~~~~~~l~~A 210 (367)
T 3b4x_A 193 S--------NLSELEKEGYFILLMIA 210 (367)
T ss_dssp S--------SSCHHHHHHHHHHHHHT
T ss_pred c--------cCCHHHHHHHHHHHHHh
Confidence 6 38999999999999876
No 72
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX, bioremediation, electron transport; HET: HEM; 1.49A {Rhodococcus} PDB: 2wiv_A*
Probab=99.74 E-value=7.3e-17 Score=147.05 Aligned_cols=214 Identities=14% Similarity=0.118 Sum_probs=151.0
Q ss_pred CCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCccccccccccCCcceEeccCChhhhhhhh
Q 040102 52 PIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAVDYLTYGSADFSFAPYGPYWKFMKK 131 (308)
Q Consensus 52 ~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr 131 (308)
.+|+..+.++.+ +|||+++..| .+++++++.+++++.+. .|+.++...........+.+ ++..+|+.|+++||
T Consensus 20 ~dp~~~~~~lr~-~~pv~~~~~g---~~~v~~~~~v~~~l~d~--~fs~~~~~~~~~~~~~~~~~-l~~~dg~~h~~~R~ 92 (394)
T 2wiy_A 20 NNPYPWYRRLQQ-DHPVHKLEDG---TYLVSRYADVSHFAKLP--IMSVEPGWADAGPWAVASDT-ALGSDPPHHTVLRR 92 (394)
T ss_dssp HCCHHHHHHHHH-HCSEEECTTS---CEEECCHHHHHHHTTST--TEECHHHHHTCGGGGGGGGS-GGGCCTTHHHHHHH
T ss_pred cCccHHHHHHHh-cCCeEEecCC---eEEEcCHHHHHHHHcCC--Cccccccccccccchhcccc-cccCCchHHHHHHH
Confidence 467888988865 5899988765 68999999999999643 57665422111111111123 45568999999999
Q ss_pred HHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHhcCcccCCchhHHHHHHHHHHH
Q 040102 132 LCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKELIRLTNNVVSRMTMGQICSINDKEADEVRKLVQET 211 (308)
Q Consensus 132 ~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~ 211 (308)
++. +.|++++++.+.+.+.+.++.+++.+.+ +.++|+...+..+++++++..+||.+.+ +.+.+.+.....
T Consensus 93 ~~~-~~fs~~~~~~~~~~i~~~~~~l~~~~~~----~~~~d~~~~~~~~~~~vi~~~~~G~~~~----~~~~~~~~~~~~ 163 (394)
T 2wiy_A 93 QTN-KWFTPKLVDGWVRTTRELVGDLLDGVEA----GQVIEARRDLAVVPTHVTMARVLQLPED----DADAVMEAMFEA 163 (394)
T ss_dssp HHH-TTCSHHHHHHHTHHHHHHHHHHHHTCCT----TCCEEHHHHHTHHHHHHHHHHHHTCCCC----CHHHHHHHHHHH
T ss_pred HHH-hccCHHHHHHHHHHHHHHHHHHHHHHhc----cCCeeHHHHHHhhhHHHHHHHHcCCCHh----HHHHHHHHHHHH
Confidence 986 8999999999999999999998887643 5679999999999999999999998762 233444433222
Q ss_pred HHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCHHHHHhhccccccccC
Q 040102 212 AELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPMDLLDMLLDISEDESSEI 291 (308)
Q Consensus 212 ~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~ 291 (308)
+ .. ....|. .....+..+....+.+++.++|++++++ ...|+++.|++..++ +
T Consensus 164 ~---~~---~~~~p~------~~~~~~~~~~~~~l~~~~~~~i~~rr~~-----------~~~dll~~Ll~~~~~---~- 216 (394)
T 2wiy_A 164 M---LM---QSAEPA------DGDVDRAAVAFGYLSARVAEMLEDKRVN-----------PGDGLADSLLDAARA---G- 216 (394)
T ss_dssp H---GG---GSSSCC------TTHHHHHHHHHHHHHHHHHHHHHHHHHS-----------CCSSHHHHHHHHHHT---T-
T ss_pred H---Hh---ccCCcc------chHHHHHHHHHHHHHHHHHHHHHHhhcC-----------CCCcHHHHHHHhhhc---C-
Confidence 1 10 001121 1122445556677888888888877531 245999999987542 2
Q ss_pred CCCHHHHHHHHHHHhcC
Q 040102 292 KLTRENIKAFILDIFAA 308 (308)
Q Consensus 292 ~lt~~~i~~~~~~l~~A 308 (308)
.+|++++++++.++++|
T Consensus 217 ~ls~~el~~~~~~l~~A 233 (394)
T 2wiy_A 217 EITESEAIATILVFYAV 233 (394)
T ss_dssp SSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 59999999999998865
No 73
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.50A {Sulfolobus solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A* 1io9_A* 1io8_A*
Probab=99.72 E-value=5.6e-17 Score=146.41 Aligned_cols=198 Identities=12% Similarity=0.135 Sum_probs=138.8
Q ss_pred chHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCc--c---ccc--cc--ccc-CCcceEeccCC
Q 040102 54 PHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPI--S---AAV--DY--LTY-GSADFSFAPYG 123 (308)
Q Consensus 54 ~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~--~---~~~--~~--~~~-~~~~~~~~~~g 123 (308)
|+..+.++ ++||||+++ | ++++++||++++++|.+. ..|++|+. . ... .. ... .+.++ +..+|
T Consensus 1 p~~~~~~l-r~~Gpv~~~--g--~~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~g 73 (368)
T 1io7_A 1 MYDWFSEM-RKKDPVYYD--G--NIWQVFSYRYTKEVLNNF-SKFSSDLTGYHERLEDLRNGKIRFDIPTRYTM-LTSDP 73 (368)
T ss_dssp CHHHHHHH-HHHCSEEEC--S--SCEEECSHHHHHHHHHCT-TTEECCCSSHHHHHHHHTTTCCCCSCGGGSSG-GGCCT
T ss_pred CCHHHHHH-HhcCCeEeE--C--CEEEEecHHHHHHHHcCc-cccccccccccccccccccccccccccccccc-ccCCC
Confidence 46678888 589999987 5 689999999999999874 57988874 1 100 11 110 11334 44579
Q ss_pred hhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHH-HHHHHHHHHHHHhcCcccCCchhHH
Q 040102 124 PYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQICSINDKEAD 202 (308)
Q Consensus 124 ~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~~ 202 (308)
+.|+++||++. +.|++++++.+.+.+.++++++++.| + . + ++|+...+ ..+++++|+.+ ||.+.+ ..+
T Consensus 74 ~~h~~~R~~~~-~~f~~~~~~~~~~~i~~~~~~l~~~l-~--~-g-~~d~~~~~~~~~~~~vi~~~-~G~~~~----~~~ 142 (368)
T 1io7_A 74 PLHDELRSMSA-DIFSPQKLQTLETFIRETTRSLLDSI-D--P-R-EDDIVKKLAVPLPIIVISKI-LGLPIE----DKE 142 (368)
T ss_dssp THHHHHHGGGT-TTTCHHHHHHHHHHHHHHHHHHHHTC-C--T-T-SEEHHHHTTTHHHHHHHHHH-HTCCGG----GHH
T ss_pred hHHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHHHHHh-h--c-C-CccHHHHHHHHHHHHHHHHH-hCCCHH----HHH
Confidence 99999999996 89999999999999999999999998 4 2 3 79999877 78999999999 998773 222
Q ss_pred HHHHHHHHHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCHHHHHhh
Q 040102 203 EVRKLVQETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPMDLLDMLLD 282 (308)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~d~l~~ll~ 282 (308)
.+.+..+. .... .. .|. ..++..+..+.+.+++.++| . ...|+++.|++
T Consensus 143 ~~~~~~~~----~~~~-~~--~p~--------~~~~~~~~~~~~~~~~~~~i-------~---------~~~d~l~~ll~ 191 (368)
T 1io7_A 143 KFKEWSDL----VAFR-LG--KPG--------EIFELGKKYLELIGYVKDHL-------N---------SGTEVVSRVVN 191 (368)
T ss_dssp HHHHHGGG----CTTS-CC--CTT--------CHHHHHHHHHHHHHHHHHHT-------T---------SSCHHHHHHHT
T ss_pred HHHHHHHH----HHhc-cC--ChH--------HHHHHHHHHHHHHHHHHHHh-------C---------CCCCHHHHHHh
Confidence 33222111 1000 00 121 12344455556666665555 1 23599999996
Q ss_pred ccccccccCCCCHHHHHHHHHHHhcC
Q 040102 283 ISEDESSEIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 283 ~~~~~~~~~~lt~~~i~~~~~~l~~A 308 (308)
. .+|+++|.+++.++++|
T Consensus 192 ~--------~l~~~ei~~~~~~l~~A 209 (368)
T 1io7_A 192 S--------NLSDIEKLGYIILLLIA 209 (368)
T ss_dssp S--------SCCHHHHHHHHHHHHHT
T ss_pred c--------cCCHHHHHHHHHHHHHh
Confidence 5 38999999999999876
No 74
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus} PDB: 2rfc_A*
Probab=99.65 E-value=4.4e-16 Score=139.21 Aligned_cols=186 Identities=15% Similarity=0.116 Sum_probs=126.7
Q ss_pred HhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCccccccccccCCcceEeccCChhhhhhhhHHHhhcCChHH
Q 040102 63 IRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAVDYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQT 142 (308)
Q Consensus 63 ~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~ 142 (308)
++||||+++ | +++++||++++++|.++ ..|++||....... ++.+++ ..+|+.|+.+||++. +.|++++
T Consensus 2 r~~gpv~~~--g---~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~---~~~~l~-~~~g~~~~~~R~~~~-~~fs~~~ 70 (343)
T 2rfb_A 2 RLNDPVHYD--G---AWHVYKYSDVKHVLMND-KIFSSNPGNRYSNA---GGISFI-TMDNPEHKEFRDISA-PYFLPSK 70 (343)
T ss_dssp -CCCCEEET--T---EEEECSHHHHHHHHHCT-TTEESSCSSCCC------CCGGG-GCCHHHHHHHHHHHH-HHHSHHH
T ss_pred CCcCCeeee--C---eEEEcCHHHHHHHHhCh-hhcccCCcCCCCCc---cccccc-cCCchHHHHHHHHhh-hhcCHHH
Confidence 579999986 4 99999999999999875 47988873211111 233444 458999999999996 8999999
Q ss_pred HhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHH-HHHHHHHHHHHHhcCcccCCchhHHHHHHHHHHHHHHhCCCCcc
Q 040102 143 LNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQICSINDKEADEVRKLVQETAELTGKFNLQ 221 (308)
Q Consensus 143 l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (308)
++.+.+.+.++++++++.|. ++|+.+.+ ..+++++|+.+ ||.+.+ ..+++.+..+.+. ..
T Consensus 71 l~~~~~~i~~~~~~l~~~l~-------~~d~~~~~~~~~~~~vi~~~-~G~~~~----~~~~~~~~~~~~~---~~---- 131 (343)
T 2rfb_A 71 INDYKDFIEETSNDLIKNID-------NKDIISEYAVRLPVNIISKI-LGIPDS----DMPLFKLWSDYII---GN---- 131 (343)
T ss_dssp HGGGHHHHHHHHHHHHTTCT-------TSCHHHHTTTHHHHHHHHHH-HTCCGG----GHHHHHHHHHHHH---TS----
T ss_pred HHHHHHHHHHHHHHHHHhcc-------ccCHHHHHhhhhhHHHHHHH-cCCCHH----HHHHHHHHHHHHh---hc----
Confidence 99999999999999987765 58898866 89999999998 998773 2334444433322 11
Q ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCHHHHHhhccccccccCCCCHHHHHHH
Q 040102 222 DYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPMDLLDMLLDISEDESSEIKLTRENIKAF 301 (308)
Q Consensus 222 ~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~ 301 (308)
..|.+. + .++. +..+.+.+++.+++ ..| ++.|++...+ +..+|+++|.++
T Consensus 132 -~~p~~~-----~-~~~~-~~~~~~~~~~~~~i------------------~~d-l~~ll~~~~~---~~~l~~~ei~~~ 181 (343)
T 2rfb_A 132 -KRDENF-----N-YVNN-RMVSRLLEIFKSDS------------------HGI-INVLAGSSLK---NRKLTMDEKIKY 181 (343)
T ss_dssp -CCSSHH-----H-HHHH-HHHHHHHHHHHSCC------------------SSH-HHHHHTCBCS---SSBCCHHHHHHH
T ss_pred -cCcchh-----h-HHHH-HHHHHHHHHHHHHH------------------hcc-HHHHHhhhcC---CCCCCHHHHHHH
Confidence 012210 1 1122 22222222221111 358 9999987543 236999999999
Q ss_pred HHHHhcC
Q 040102 302 ILDIFAA 308 (308)
Q Consensus 302 ~~~l~~A 308 (308)
+.++++|
T Consensus 182 ~~~~~~A 188 (343)
T 2rfb_A 182 IMLLIIG 188 (343)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 75
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent, mono-oxygenases, oxidoreductase; HET: HEM; 2.00A {Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Probab=99.52 E-value=7.1e-13 Score=121.52 Aligned_cols=217 Identities=12% Similarity=0.053 Sum_probs=141.2
Q ss_pred CCchHHHHHHHHhcC-CeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCccccccccccCCcceEeccCChhhhhhh
Q 040102 52 PIPHQALHKLSIRYG-PLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAVDYLTYGSADFSFAPYGPYWKFMK 130 (308)
Q Consensus 52 ~~~~~~~~~~~~~yG-~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~~~~~~~~~~~~~~~~g~~Wk~~R 130 (308)
.++|..+.++.++.+ +++..-.|+ ..-+|++++.|++||. +...|++++........ ......++..+|+.|+++|
T Consensus 37 ~~~~~~~~~lr~~~~~~~~~~~~~g-g~W~vtr~~dv~~vl~-d~~~fs~~~~~~~~~~~-~~~~~~~~~~D~p~H~r~R 113 (417)
T 4dxy_A 37 DGYHEAWKKVQHPGIPDLIWTPFTG-GHWIATNGDTVKEVYS-DPTRFSSEVIFLPKEAG-EKAQMVPTKMDPPEHTPYR 113 (417)
T ss_dssp GCHHHHHHHHSCTTCCSEEEESSTT-SEEEECSHHHHHHHHT-CTTTEESSCCSSSTTSS-CSSCTTTTTCCTTTHHHHH
T ss_pred cChHHHHHHHHhhCCCCEEecCCCC-CEEEECCHHHHHHHHc-CchhccCCCcccccccc-cccccCcccCCcHHHHHHH
Confidence 457788888876543 354443444 4667899999999995 44678776432211111 1112233445799999999
Q ss_pred hHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHH-HHHHHHHHHHHHhcCcccCCchhHHHHHHHHH
Q 040102 131 KLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKEL-IRLTNNVVSRMTMGQICSINDKEADEVRKLVQ 209 (308)
Q Consensus 131 r~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~ 209 (308)
|+++ +.|++++++.+.+.+++.++++++.+.. +.++|+...+ ..+++.+++. ++|...+ ....+.+...
T Consensus 114 rll~-~~Fs~~~l~~~~~~i~~~~~~lld~l~~----~g~~D~v~~~a~~l~~~vi~~-llg~~~~----d~~~~~~~~~ 183 (417)
T 4dxy_A 114 KALD-KGLNLAKIRKVEDKVREVASSLIDSFAA----RGECDFAAEYAELFPVHVFMA-LADLPLE----DIPVLSEYAR 183 (417)
T ss_dssp HHHH-HHHCHHHHHTTHHHHHHHHHHHHHHHHT----TSEEEHHHHTTTTHHHHHHHH-HTTCCGG----GHHHHHHHHH
T ss_pred HHhh-hhcCHHHHHHHHHHHHHHHHHHHHHhhh----cCCeeeHHHHHhhhHHHHHHH-HcCCCHH----HHHHHHhhhh
Confidence 9996 8999999999999999999999998875 3468876655 4566677765 5777652 2233433333
Q ss_pred HHHHHhCCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCHHHHHhhccccccc
Q 040102 210 ETAELTGKFNLQDYIWFCKNIDLQGFGKRLKEVRRKFDDMMERILKEHQEARKINKETGKDYAPMDLLDMLLDISEDESS 289 (308)
Q Consensus 210 ~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~ 289 (308)
.+ .... .. . +.............+.+++.++++++++ +...|+++.|+....++
T Consensus 184 ~~---~~~~---~~------~-~~~~~~~~~~~~~~~~~~~~~li~~rr~-----------~~~ddl~s~L~~~~~~~-- 237 (417)
T 4dxy_A 184 QM---TRPE---GN------T-PEEMATDLEAGNNGFYAYVDPIIRARVG-----------GDGDDLITLMVNSEING-- 237 (417)
T ss_dssp HH---HSCC---CS------S-HHHHHHHHHHHHHHHHHHHHHHHHHHTT-----------CCCCSHHHHHHTCEETT--
T ss_pred hh---cccc---cc------C-hHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------CCccchhhhhccccccC--
Confidence 21 1110 00 0 1112344455666777777777766531 24569999999886543
Q ss_pred cCCCCHHHHHHHHHHHhcC
Q 040102 290 EIKLTRENIKAFILDIFAA 308 (308)
Q Consensus 290 ~~~lt~~~i~~~~~~l~~A 308 (308)
..+|++++.+++..+++|
T Consensus 238 -~~~~~~e~~~~~~~ll~A 255 (417)
T 4dxy_A 238 -ERIAHDKAQGLISLLLLG 255 (417)
T ss_dssp -EECCHHHHHHHHHHHHHH
T ss_pred -CccchhHHHHHHHHHHhh
Confidence 369999999999998875
No 76
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A {Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A* 4dnz_A*
Probab=99.50 E-value=1.5e-13 Score=125.77 Aligned_cols=148 Identities=12% Similarity=0.121 Sum_probs=104.9
Q ss_pred CCCCCeee-ecc--cCCCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCccccc---cccc
Q 040102 38 PMALPIIG-HLH--LLAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAAV---DYLT 111 (308)
Q Consensus 38 P~~~PllG-nl~--~l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~~---~~~~ 111 (308)
+.++|.+| +.+ .+..+|+..+.++.+ +|||+ |.++.++.+|++++.|++||.+ ...|++....... ....
T Consensus 17 ~~~~P~~~~dp~~~~~~~dP~~~~~~lR~-~gPV~--~~~~~~~~~vt~~~~v~~vl~d-~~~fs~~~~~~~~~~~~~~~ 92 (412)
T 4dnj_A 17 GAGVPHLGIDPFALDYFADPYPEQETLRE-AGPVV--YLDKWNVYGVARYAEVYAVLND-PLTFCSSRGVGLSDFKKEKP 92 (412)
T ss_dssp STTSCEECCCTTSHHHHHSCHHHHHHHHH-HCSSE--EETTTTEEEECSHHHHHHHHTC-TTTEESTTCSSSSCTTTSCC
T ss_pred CCCCCccCCCCCCHHHHhCcHHHHHHHHh-cCCEE--EECCCCEEEECCHHHHHHHHcC-CccccCCCcccccccccccc
Confidence 35688887 222 123578889988864 79996 5677789999999999999954 4566554321111 1111
Q ss_pred cCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceeh-HHHHHHHHHHHHHHHHh
Q 040102 112 YGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDV-GKELIRLTNNVVSRMTM 190 (308)
Q Consensus 112 ~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~-~~~~~~~t~~vi~~~~f 190 (308)
....+.++..+|+.|+++||+++ +.|++++++.+.+.+.+.++++++.+... +.++|+ .+....+++++++.+ +
T Consensus 93 ~~~~~~~~~~Dg~~H~r~R~~~~-~~Fs~~~l~~~~~~i~~~~~~l~~~~~~~---~~~~D~v~~~~~~~~~~~i~~l-~ 167 (412)
T 4dnj_A 93 WRPPSLILEADPPAHTRTRAVLS-KVLSPATMKRLRDGFAAAADAKIDELLAR---GGNIDAIADLAEAYPLSVFPDA-M 167 (412)
T ss_dssp SSCCCTTTTCCTTHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHHHHHHHT---TSEEETCCCCCCHHHHHHHHHH-H
T ss_pred ccCCCccccCChHHHHHHHhhcc-cccCHHHHHHhhHHHHHHHHHHHHhhhcc---CCCceeHHHHHhhhhHhHHHHH-c
Confidence 11123345568999999999996 89999999999999999999999998762 456775 445567788888865 5
Q ss_pred cCcc
Q 040102 191 GQIC 194 (308)
Q Consensus 191 G~~~ 194 (308)
|...
T Consensus 168 g~~~ 171 (412)
T 4dnj_A 168 GLKQ 171 (412)
T ss_dssp TCCS
T ss_pred CCch
Confidence 5544
No 77
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=98.19 E-value=8.3e-09 Score=93.09 Aligned_cols=133 Identities=9% Similarity=0.030 Sum_probs=85.8
Q ss_pred CCCC-CCCCCeeeeccc-----CCCCchHHHHHHHHhcCCeeEEecCCcCEEEecCHHHHHHHHHhcccccccCCcccc-
Q 040102 34 LPPS-PMALPIIGHLHL-----LAPIPHQALHKLSIRYGPLIHLFLGSVPCIVACSPETAKEILKTHETSFCDRPISAA- 106 (308)
Q Consensus 34 ~pPg-P~~~PllGnl~~-----l~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp~~~~- 106 (308)
+||| |+++|++|+... +..+++..+.++.++ ||++.. .+.+++++++.+++||.+ ..|+.++....
T Consensus 35 ~ppG~~~~~P~~G~~~~~~~~~~~~dp~~~~~~lr~~--pV~~~~---~~~~vv~~~~~v~~vl~d--~~f~~~~~~~~~ 107 (381)
T 2yjn_B 35 MIRGLHWGYGSNGDPYPMLLCGHDDDPQRRYRSMRES--GVRRSR---TETWVVADHATARQVLDD--PAFTRATGRTPE 107 (381)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHTCCSCCHHHHHHHHHH--CEEECS---SSCEEECSHHHHHHHHHC--SSEESSCCCCCH
T ss_pred CCCcccccccccCCchhhcCchhccCchHHHHHHHhC--CceeCC---CCEEEEcCHHHHHHHHcC--CCcCCCcccccc
Confidence 5677 558999998744 345789999999865 998755 468999999999999976 36877653210
Q ss_pred c-----cccccCCcceEeccCChhhhhhhhHHHhhcCChHHHhhhhHHHHHHHHHHHHHHHHhccCCCceehHHHH-HHH
Q 040102 107 V-----DYLTYGSADFSFAPYGPYWKFMKKLCMTQLLGGQTLNQFIPIRSEEIWRFMQLMLKKAKASEAVDVGKEL-IRL 180 (308)
Q Consensus 107 ~-----~~~~~~~~~~~~~~~g~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~-~~~ 180 (308)
. ......+.++++ .+|+.| .+.|+ . .+.+++.++++++.|. .++|+...+ ..+
T Consensus 108 ~~~~~~~~~~~~~~~l~~-~dg~~H--------~~~Ft-----~-~~~i~~~~~~ll~~~~------g~~Dl~~~~a~~l 166 (381)
T 2yjn_B 108 WMRAAGAPPAEWAQPFRD-VHAASW--------EGEVP-----D-VGELAESFAGLLPGAG------ARLDLVGDFAWQV 166 (381)
T ss_dssp HHHHHTCCHHHHTHHHHH-HHHCCC--------CSCCC-----C-CSCHHHHTSTTSCC------------CCCCCCTHH
T ss_pred cccccccccchhhhhhhh-CCchhh--------hhccC-----C-hHHHHHHHHHHHHhcc------CcchHHHHHHHHH
Confidence 0 000000123444 468999 26788 2 6778888888888775 258888665 699
Q ss_pred HHHHHHHHHhcCccc
Q 040102 181 TNNVVSRMTMGQICS 195 (308)
Q Consensus 181 t~~vi~~~~fG~~~~ 195 (308)
++++||++ ||.+.+
T Consensus 167 ~~~vi~~l-~G~~~~ 180 (381)
T 2yjn_B 167 PVQGMTAV-LGAAGV 180 (381)
T ss_dssp HHHHHHTC------C
T ss_pred HHHHHHHH-cCCCHH
Confidence 99999995 999874
No 78
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.47 E-value=0.77 Score=32.03 Aligned_cols=62 Identities=15% Similarity=0.146 Sum_probs=47.6
Q ss_pred CeeeecccCCC--CchHHHHHHHHhcC-CeeEEecCCcCEEEecCHHHHHHHHH-hcccccccCCcc
Q 040102 42 PIIGHLHLLAP--IPHQALHKLSIRYG-PLIHLFLGSVPCIVACSPETAKEILK-THETSFCDRPIS 104 (308)
Q Consensus 42 PllGnl~~l~~--~~~~~~~~~~~~yG-~i~~~~~g~~~~vvi~d~e~~~evl~-~~~~~f~~Rp~~ 104 (308)
-.+||+..-.+ .....+.++..+|| +|..+ .|++=+|...+.+.|+.++. -++..+.+||..
T Consensus 12 lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 12 LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-TGCSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-ecCEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 45999975422 12345888999995 99888 67999999999999999985 367777788854
No 79
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=86.34 E-value=3 Score=29.55 Aligned_cols=67 Identities=19% Similarity=0.283 Sum_probs=47.0
Q ss_pred CCCCCCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEec---C---CcCEEEecCHHHHHHHHHh-cccccccC
Q 040102 33 SLPPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFL---G---SVPCIVACSPETAKEILKT-HETSFCDR 101 (308)
Q Consensus 33 ~~pPgP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~---g---~~~~vvi~d~e~~~evl~~-~~~~f~~R 101 (308)
+.||.|...-++||++. ......+.++...||+|..+.+ + +.-+|-..+++.|..++.. ++..+.+|
T Consensus 2 r~~~~~~~~l~V~nlp~--~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 75 (115)
T 3lqv_A 2 RLPPEVNRILYIRNLPY--KITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNR 75 (115)
T ss_dssp -CCTTCCSEEEEESCCT--TCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSC
T ss_pred CCCCCCCCEEEEeCCCC--CCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 45777777789999863 2235568888889999998887 2 2446777899999988863 44444443
No 80
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=83.28 E-value=4.9 Score=26.35 Aligned_cols=59 Identities=15% Similarity=0.295 Sum_probs=40.9
Q ss_pred eeeecccCCCC----chHHHHHHHHhcCCeeEEecC-------CcCEEEecCHHHHHHHHHh-cccccccC
Q 040102 43 IIGHLHLLAPI----PHQALHKLSIRYGPLIHLFLG-------SVPCIVACSPETAKEILKT-HETSFCDR 101 (308)
Q Consensus 43 llGnl~~l~~~----~~~~~~~~~~~yG~i~~~~~g-------~~~~vvi~d~e~~~evl~~-~~~~f~~R 101 (308)
++||++.-... ....+.+...+||+|..+.+- +--+|...+++.|+.++.. ++..+.+|
T Consensus 5 ~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 5 VVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp EEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 67888643221 246778888899999998875 2335777899999999864 44555555
No 81
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=82.45 E-value=2.9 Score=26.93 Aligned_cols=58 Identities=16% Similarity=0.163 Sum_probs=41.0
Q ss_pred eeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHhcccccccCC
Q 040102 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 43 llGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
++||++. ......+.++..+||+|..+.+-. --.|...+++.++.++..++..+.+|+
T Consensus 3 ~v~nLp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~ 69 (75)
T 1iqt_A 3 FVGGLSP--DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSK 69 (75)
T ss_dssp EESCCCS--SCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBC
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEE
Confidence 4677643 223566788888899998888732 335677899999999987666665554
No 82
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.34 E-value=3.5 Score=28.89 Aligned_cols=61 Identities=13% Similarity=0.119 Sum_probs=44.1
Q ss_pred CCCeeeecccCCCCchHHHHHHHHhcCCeeEEecC--------CcCEEEecCHHHHHHHHHhcccccccCC
Q 040102 40 ALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG--------SVPCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 40 ~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g--------~~~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
..-++||++. ......+.++...||+|..+.+- +--+|...+++.++.++..++..+.+|+
T Consensus 12 ~~lfV~~Lp~--~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~ 80 (103)
T 1s79_A 12 RSVYIKGFPT--DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETD 80 (103)
T ss_dssp GCEEEECCCT--TCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTT
T ss_pred CEEEEECCCC--CCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEE
Confidence 4567898864 23356788888899999888864 2346777899999999976555665554
No 83
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=81.51 E-value=4.5 Score=25.96 Aligned_cols=58 Identities=10% Similarity=0.141 Sum_probs=40.6
Q ss_pred eeeecccCCCCchHHHHHHHHhcCCeeEEecCCc---------CEEEecCHHHHHHHHHhcccccccCC
Q 040102 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSV---------PCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 43 llGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~---------~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
++||++. ......+.++..+||+|..+.+-.. -+|...+++.++.++.-++..+.+|+
T Consensus 3 ~v~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 69 (75)
T 2mss_A 3 FVGGLSV--NTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKM 69 (75)
T ss_dssp EEECCCS--SCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCC
T ss_pred EEecCCC--CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEE
Confidence 5677753 2335667888889999988887432 34667899999999875555665554
No 84
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=78.47 E-value=5.2 Score=27.67 Aligned_cols=59 Identities=14% Similarity=0.112 Sum_probs=41.6
Q ss_pred CeeeecccCCCCchHHHHHHHHhcCCeeEEecCC-----c----CEEEecCHHHHHHHHHh-cccccccCC
Q 040102 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS-----V----PCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 42 PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~-----~----~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
-++||++. .-....+.++..+||+|..+.+-. + =+|-..+++.|+.++.. ++..+.+|+
T Consensus 22 lfV~nLp~--~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~ 90 (99)
T 4fxv_A 22 LIVNYLPQ--NMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKT 90 (99)
T ss_dssp EEEESCCT--TCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCC--CCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 47888864 223567888888999998887632 1 25777899999999864 555555554
No 85
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.13 E-value=12 Score=25.12 Aligned_cols=66 Identities=21% Similarity=0.304 Sum_probs=46.5
Q ss_pred CCCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHH-hcccccccCCc
Q 040102 36 PSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILK-THETSFCDRPI 103 (308)
Q Consensus 36 PgP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~-~~~~~f~~Rp~ 103 (308)
|.|...-++||+.. ......+.++..+||+|..+.+-. .=+|...+++.++.++. -++..+.+|+.
T Consensus 2 ~~~~~~l~v~nlp~--~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 77 (95)
T 2dnz_A 2 SSGSSGLYVGSLHF--NITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM 77 (95)
T ss_dssp CSCCCEEEEESCCT--TCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCcEEEEeCCCC--CCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 34455668899864 233566888889999998888643 23567789999999987 35566666664
No 86
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=75.68 E-value=12 Score=26.27 Aligned_cols=61 Identities=15% Similarity=0.232 Sum_probs=43.7
Q ss_pred CCeeeecccCCCCchHHHHHHHHhcCCeeEEecC---CcCEEEecCHHHHHHHHHh-cccccccCCc
Q 040102 41 LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---SVPCIVACSPETAKEILKT-HETSFCDRPI 103 (308)
Q Consensus 41 ~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvi~d~e~~~evl~~-~~~~f~~Rp~ 103 (308)
.-++||++. ......+.++..+||+|..+.+- +.-+|...+++.++.++.. ++..+.+|+.
T Consensus 12 ~l~V~nLp~--~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 76 (111)
T 1whx_A 12 VILAKNLPA--GTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPL 76 (111)
T ss_dssp EEEEESCCT--TCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred EEEEeCCCC--CCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Confidence 347888753 33456788888899999988874 3456777899999988863 5566666653
No 87
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=73.39 E-value=14 Score=24.10 Aligned_cols=64 Identities=16% Similarity=0.249 Sum_probs=44.2
Q ss_pred CCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 37 SPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 37 gP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
.|...-++||++. ......+.++..+||+|..+.+-. .=+|-..+++.++.++.. ++..+.+|+
T Consensus 5 ~~~~~l~V~nl~~--~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 78 (85)
T 3mdf_A 5 TTKRVLYVGGLAE--EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 78 (85)
T ss_dssp CCSSEEEEECCCT--TCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEECCCC--CCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 3445668899863 233567888888999999988732 236777899999999853 445554443
No 88
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=73.06 E-value=22 Score=25.74 Aligned_cols=65 Identities=18% Similarity=0.221 Sum_probs=44.7
Q ss_pred CCCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 36 PSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 36 PgP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
|.|...-+|||+.. ......+.++..+||+|..+.+-. .=+|...+++.++.++.. ++..+.+|+
T Consensus 43 ~~~~~~l~V~nLp~--~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~ 117 (129)
T 2kxn_B 43 PDPNCCLGVFGLSL--YTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 117 (129)
T ss_dssp CCCSSCBCEETCTT--SCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCCEEEEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 33445678898854 223567888889999998888732 235667899999999874 445555554
No 89
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=72.81 E-value=6.2 Score=27.71 Aligned_cols=69 Identities=10% Similarity=0.034 Sum_probs=45.8
Q ss_pred CCCCCCCCCeeeecccC---CCCchHHHHHHHHhcCCeeEEecCC----------cCEEEecCHHHHHHHHHh-cccccc
Q 040102 34 LPPSPMALPIIGHLHLL---APIPHQALHKLSIRYGPLIHLFLGS----------VPCIVACSPETAKEILKT-HETSFC 99 (308)
Q Consensus 34 ~pPgP~~~PllGnl~~l---~~~~~~~~~~~~~~yG~i~~~~~g~----------~~~vvi~d~e~~~evl~~-~~~~f~ 99 (308)
+.|.|...-+|+|+... .......+.+...+||+|..+++-. .=+|...+++.|..+... ++..|.
T Consensus 3 i~~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~ 82 (105)
T 2pe8_A 3 MGKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFG 82 (105)
T ss_dssp GGGSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 44567777888998642 2234566777778999998887632 124666799888888753 556666
Q ss_pred cCC
Q 040102 100 DRP 102 (308)
Q Consensus 100 ~Rp 102 (308)
+|+
T Consensus 83 Gr~ 85 (105)
T 2pe8_A 83 GRV 85 (105)
T ss_dssp TEE
T ss_pred CcE
Confidence 665
No 90
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=71.50 E-value=15 Score=25.31 Aligned_cols=63 Identities=14% Similarity=0.262 Sum_probs=45.0
Q ss_pred CCCCeeeecccCCCC----chHHHHHHHHhcCCeeEEecC-------CcCEEEecCHHHHHHHHHh-cccccccC
Q 040102 39 MALPIIGHLHLLAPI----PHQALHKLSIRYGPLIHLFLG-------SVPCIVACSPETAKEILKT-HETSFCDR 101 (308)
Q Consensus 39 ~~~PllGnl~~l~~~----~~~~~~~~~~~yG~i~~~~~g-------~~~~vvi~d~e~~~evl~~-~~~~f~~R 101 (308)
...-++||++.-... ....+.+...+||+|..+++- +.=+|...+++.++.++.. ++..+.+|
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 345689999753211 346788888899999998875 3346777899999999875 55666555
No 91
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=71.00 E-value=11 Score=24.58 Aligned_cols=58 Identities=12% Similarity=0.238 Sum_probs=40.2
Q ss_pred eeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 43 llGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
++||++. ......+.++..+||+|..+.+-. .=+|...+++.++.++.. ++..+.+|+
T Consensus 5 ~V~nlp~--~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 72 (83)
T 3md1_A 5 FVGDLNV--NVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 72 (83)
T ss_dssp EEECCCT--TCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 5777753 223566788888999998887642 236778899999999864 555555554
No 92
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=70.90 E-value=14 Score=24.27 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=41.2
Q ss_pred CeeeecccCCCCchHHHHHHHHhcCCeeEEecCC----------cCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS----------VPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 42 PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~----------~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
=++||++. ......+.++..+||+|..+.+-. .=+|...+++.++.++.. ++..+.+|+
T Consensus 7 l~V~nlp~--~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (88)
T 4a8x_A 7 VHIGRLTR--NVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQE 76 (88)
T ss_dssp EEEECCCT--TCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCC--CCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeE
Confidence 46788753 223556778888999998888722 335677799999999874 555565554
No 93
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.80 E-value=22 Score=24.25 Aligned_cols=63 Identities=21% Similarity=0.273 Sum_probs=45.5
Q ss_pred CCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCCc---------CEEEecCHHHHHHHHHh-cccccccCCc
Q 040102 39 MALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSV---------PCIVACSPETAKEILKT-HETSFCDRPI 103 (308)
Q Consensus 39 ~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~---------~~vvi~d~e~~~evl~~-~~~~f~~Rp~ 103 (308)
...-++||++. ......+.++..+||+|..+.+-.. =+|...+++.++.++.. ++..+.+|+.
T Consensus 15 ~~~l~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (105)
T 1x5u_A 15 DATVYVGGLDE--KVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 87 (105)
T ss_dssp TTEEEEECCCT--TCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred CCEEEEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 34568899864 2335678888889999999887542 35777899999999975 5556666653
No 94
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=70.67 E-value=8.8 Score=25.26 Aligned_cols=61 Identities=11% Similarity=0.073 Sum_probs=42.0
Q ss_pred CCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 40 ALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 40 ~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
..=++||+.. ......+.++..+||+|..+.+-. .-+|-..+++.++.++.. ++..+.+|+
T Consensus 7 ~~l~v~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 77 (87)
T 3bs9_A 7 FHVFVGDLSP--EITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 77 (87)
T ss_dssp EEEEEESCCT--TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred eEEEEeCCCC--CCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 3557888853 233566888888999998887643 235677899999999864 444454443
No 95
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=70.66 E-value=7.9 Score=25.59 Aligned_cols=64 Identities=13% Similarity=0.220 Sum_probs=44.5
Q ss_pred CCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHhcccccccCC
Q 040102 37 SPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 37 gP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
.+...-++||++. ......+.++..+||+|..+.+-. -=+|...+++.++.++...+..+.+|+
T Consensus 9 ~~~~~l~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~ 81 (87)
T 3s7r_A 9 EDAGKMFVGGLSW--DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRV 81 (87)
T ss_dssp SCTTEEEEECCCT--TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEE
T ss_pred CCCCEEEEeCCCC--CCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEE
Confidence 3444668899863 234567888889999998887631 235667799999999976555555443
No 96
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.22 E-value=12 Score=24.98 Aligned_cols=66 Identities=18% Similarity=0.229 Sum_probs=45.1
Q ss_pred CCCCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 35 PPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 35 pPgP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
.|.|...-++||++.- .....+.++..+||+|..+.+-. .=+|...+++.++.++.. ++..+.+|+
T Consensus 11 ~~~~~~~l~v~nlp~~--~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLY--TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 86 (95)
T ss_dssp SCCGGGCEEEESCCSS--CCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCEEEEECCCCC--CCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3445556788998642 23567888888999998888731 235667899999999874 445554443
No 97
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=70.20 E-value=19 Score=24.33 Aligned_cols=63 Identities=22% Similarity=0.250 Sum_probs=43.8
Q ss_pred CCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 38 PMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 38 P~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
|...-++||++. ......+.++..+||+|..+.+-. .-+|...+++.++.++.. ++..+.+|+
T Consensus 7 ~~~~l~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (99)
T 1whw_A 7 GSGRLFVRNLSY--TSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRM 79 (99)
T ss_dssp SCEEEEEECCCT--TCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCE
T ss_pred CCCEEEEeCCCC--CCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 344567888863 233567888888999999988743 235777899999999843 445555554
No 98
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=69.70 E-value=11 Score=26.65 Aligned_cols=63 Identities=21% Similarity=0.245 Sum_probs=44.1
Q ss_pred CCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 38 PMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 38 P~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
|+.--++||+.. ......+.+...+||+|..+.+-. -=+|...+++.|+.++.. ++..+.+|+
T Consensus 5 p~~~lfV~nL~~--~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~ 77 (110)
T 3s8s_A 5 PLKEVTFARLND--NVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNI 77 (110)
T ss_dssp CCCEEEEESCCT--TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCcEEEEECCCC--CCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 444568899863 233567888889999999888632 236888899999999864 444554443
No 99
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=69.69 E-value=18 Score=25.73 Aligned_cols=61 Identities=13% Similarity=0.257 Sum_probs=44.4
Q ss_pred CCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHh-cccccccCCc
Q 040102 41 LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT-HETSFCDRPI 103 (308)
Q Consensus 41 ~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~-~~~~f~~Rp~ 103 (308)
.-+|||+.. ......+.++..+||+|..+.+-. .=+|...+++.|+.++.. ++..+.+++.
T Consensus 24 ~l~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 94 (126)
T 3ex7_B 24 ILFVTGVHE--EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 94 (126)
T ss_dssp EEEEESCCT--TCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred EEEEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 468888863 233567888888999999988742 336778899999999863 6666767654
No 100
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=69.53 E-value=10 Score=26.88 Aligned_cols=62 Identities=15% Similarity=0.022 Sum_probs=44.8
Q ss_pred CCCCeeeecccCCCCchHHHHHHHHhcC-CeeEEecC-----CcCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 39 MALPIIGHLHLLAPIPHQALHKLSIRYG-PLIHLFLG-----SVPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 39 ~~~PllGnl~~l~~~~~~~~~~~~~~yG-~i~~~~~g-----~~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
...-++||+.. ......+.++..+|| .|..+.+- +-=+|...+++.++.++.+ ++..+.+|+
T Consensus 28 ~~~l~VgnLp~--~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~ 96 (111)
T 2jvr_A 28 RYRITMKNLPE--GCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSV 96 (111)
T ss_dssp CEEEEEECSSC--CCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred CCEEEEECCCC--CCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 34568899863 334667888888999 78887773 3457778899999999864 555565554
No 101
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.26 E-value=24 Score=24.02 Aligned_cols=67 Identities=12% Similarity=0.104 Sum_probs=46.2
Q ss_pred CCCCCCCCeeeecccCCCCchHHHHHHHHh-cCCeeEEecCC--------cCEEEecCHHHHHHHHHh-cccc-cccCCc
Q 040102 35 PPSPMALPIIGHLHLLAPIPHQALHKLSIR-YGPLIHLFLGS--------VPCIVACSPETAKEILKT-HETS-FCDRPI 103 (308)
Q Consensus 35 pPgP~~~PllGnl~~l~~~~~~~~~~~~~~-yG~i~~~~~g~--------~~~vvi~d~e~~~evl~~-~~~~-f~~Rp~ 103 (308)
.+.|...-++||+..- .....+.++..+ ||+|..+.+-. .-+|-..+++.++.++.. ++.. +.+|+.
T Consensus 5 ~~~~~~~l~V~nLp~~--~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPD--VDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp CSSCCCCEEEECCCTT--CCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCCCcEEEEeCCCCC--CCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 3455567789998642 235567777788 99998887632 346777899999999973 4445 666653
No 102
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=69.17 E-value=9.5 Score=25.22 Aligned_cols=58 Identities=16% Similarity=0.186 Sum_probs=40.2
Q ss_pred eeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHhcccccccCC
Q 040102 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 43 llGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
++||++. ......+.++...||+|..+.+-. --+|...+++.++.++.-++..+.+|+
T Consensus 10 ~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~ 76 (89)
T 3ucg_A 10 YVGNVDY--GATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQ 76 (89)
T ss_dssp EEESCCT--TCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEE
T ss_pred EEeCCCC--CCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcE
Confidence 6777753 223566888888999998887643 235777899999999855555555554
No 103
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=69.05 E-value=18 Score=23.95 Aligned_cols=62 Identities=13% Similarity=0.135 Sum_probs=43.5
Q ss_pred CCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecC-------CcCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 39 MALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG-------SVPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 39 ~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g-------~~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
...-++||++. ......+.++..+||+|..+.+- +.-+|-..+++.++.++.. ++..+.+|+
T Consensus 8 ~~~l~V~nlp~--~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 77 (92)
T 2dgv_A 8 ACQIFVRNLPF--DFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGRE 77 (92)
T ss_dssp CCEEEECSCCT--TCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBC
T ss_pred CcEEEEeCCCC--CCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 34567888863 33356788888899998887764 2335667799999999874 555666665
No 104
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=68.88 E-value=8 Score=22.55 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhc
Q 040102 7 YIVLFLVWLVSTILVRSIFRRS 28 (308)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~ 28 (308)
.++++++++..+++.+|+.+++
T Consensus 18 vVGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 18 VVGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhheehhh
Confidence 4444444444343344555444
No 105
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=68.75 E-value=17 Score=24.60 Aligned_cols=62 Identities=13% Similarity=0.132 Sum_probs=41.5
Q ss_pred CCCCeeeecccCCCCchHHHHHHHHhcCCeeE--------EecCC---------cCEEEecCHHHHHHHHHh-ccccccc
Q 040102 39 MALPIIGHLHLLAPIPHQALHKLSIRYGPLIH--------LFLGS---------VPCIVACSPETAKEILKT-HETSFCD 100 (308)
Q Consensus 39 ~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~--------~~~g~---------~~~vvi~d~e~~~evl~~-~~~~f~~ 100 (308)
...=++||+.. ......+.++..+||.|.. +.+-. .-+|...+.+.++.++.. ++..+.+
T Consensus 13 ~~~l~V~nLp~--~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 13 NNTIFVQGLGE--NVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CSEEEEECCCS--SCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCEEEEeCCCC--CCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 34558899864 2335678888889998876 55421 235677899999999863 5555555
Q ss_pred CC
Q 040102 101 RP 102 (308)
Q Consensus 101 Rp 102 (308)
|+
T Consensus 91 ~~ 92 (99)
T 2la6_A 91 NP 92 (99)
T ss_dssp SB
T ss_pred cE
Confidence 54
No 106
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=67.95 E-value=18 Score=24.34 Aligned_cols=63 Identities=21% Similarity=0.421 Sum_probs=43.0
Q ss_pred CCCCCeeeecccCCCCchH----HHHHHHHhcCCeeEEecC------CcCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 38 PMALPIIGHLHLLAPIPHQ----ALHKLSIRYGPLIHLFLG------SVPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 38 P~~~PllGnl~~l~~~~~~----~~~~~~~~yG~i~~~~~g------~~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
|...-++||++.- .... .+.+...+||+|..+.+- +.-+|-..+++.++.++.. ++..+.+|+
T Consensus 7 ~~~~l~V~nLp~~--~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 7 PNHTIYINNLNEK--IKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp CCSEEEEESCCTT--SCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEeCCCCC--CCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 3345688998642 2233 344888999999988775 4556778899999999864 455554443
No 107
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=67.38 E-value=13 Score=25.37 Aligned_cols=59 Identities=17% Similarity=0.370 Sum_probs=41.6
Q ss_pred eeeecccCCCCchHHHHHHHHhcCCeeEEecC----CcCEEEecCHHHHHHHHHh-cccccccCCc
Q 040102 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG----SVPCIVACSPETAKEILKT-HETSFCDRPI 103 (308)
Q Consensus 43 llGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g----~~~~vvi~d~e~~~evl~~-~~~~f~~Rp~ 103 (308)
++||++. ......+.++..+||+|..+.+- +.-+|-..+++.++.++.. ++..+.+++.
T Consensus 4 ~V~nLp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 67 (101)
T 2hvz_A 4 YVGNLGT--GAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRV 67 (101)
T ss_dssp EEECCCS--SCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCC
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEE
Confidence 5777753 23356788888899998888763 3445667899999999874 5556666653
No 108
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.21 E-value=19 Score=24.37 Aligned_cols=62 Identities=11% Similarity=0.102 Sum_probs=43.9
Q ss_pred CCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC--------cCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 39 MALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS--------VPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 39 ~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~--------~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
...-++||++. ......+.++..+||+|..+++-. .-+|-..+++.|+.++.. ++..+.+|+
T Consensus 17 ~~~l~v~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 87 (100)
T 2do4_A 17 KHKLFISGLPF--SCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENI 87 (100)
T ss_dssp CSCEEEESCCT--TCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred CCEEEEeCCCC--CCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 44568898864 223566888888999998888642 346777899999999854 555555554
No 109
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=66.86 E-value=23 Score=24.44 Aligned_cols=59 Identities=8% Similarity=0.135 Sum_probs=42.0
Q ss_pred CeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 42 PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
-++||++. ......+.++..+||+|..+.+-. .=+|-..+++.++.++.. ++..+.+|+
T Consensus 29 l~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 97 (110)
T 1oo0_B 29 LFVTSIHE--EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 97 (110)
T ss_dssp EEEESCCT--TCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCC--CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 57888864 233566888889999999988742 236677899999999863 445554444
No 110
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.73 E-value=18 Score=24.44 Aligned_cols=61 Identities=11% Similarity=0.051 Sum_probs=43.3
Q ss_pred CCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---cCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 38 PMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---VPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 38 P~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
|...-++||+ ......+.++..+||+|..+.++. .-+|...+++.+..++.. ++..+.+|+
T Consensus 14 ~~~~l~V~n~----~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 78 (97)
T 1x5p_A 14 KGNTLYVYGE----DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQ 78 (97)
T ss_dssp CCSEEEEECS----SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred CCCEEEEcCC----CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 3345578883 333567888889999999998863 345667799999999864 555555554
No 111
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.46 E-value=21 Score=24.35 Aligned_cols=64 Identities=11% Similarity=0.108 Sum_probs=44.7
Q ss_pred CCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC-------cCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 37 SPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS-------VPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 37 gP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~-------~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
.+...-++||++. ......+.++..+||+|..+.+-. .=+|...+++.++.++.. ++..+.+|+
T Consensus 13 ~~~~~l~V~nlp~--~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cq3_A 13 STPKRLHVSNIPF--RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRK 84 (103)
T ss_dssp CCCCEEEEESCCT--TCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3344568899853 233566888888999998888642 346677899999999864 555566655
No 112
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=65.89 E-value=20 Score=25.21 Aligned_cols=61 Identities=11% Similarity=0.010 Sum_probs=44.0
Q ss_pred CCCeeeecccCCCCchHHHHHHHHhcCCeeEEecC--CcCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 40 ALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG--SVPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 40 ~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g--~~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
..-++||+..- .....+.++..+||+|..+.+- +.-+|...+++.++.++.. ++..+.+|+
T Consensus 17 ~~l~V~nLp~~--~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 17 NRVVVSGLPPS--GSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp CCEEEEECCSS--CCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred cEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 35688998643 2345677788899999888865 4566777899999999863 556676665
No 113
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=65.82 E-value=19 Score=24.64 Aligned_cols=59 Identities=12% Similarity=0.241 Sum_probs=41.8
Q ss_pred CeeeecccCCCCchHHHHHHHHhcCCeeEEecC---------CcCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---------SVPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 42 PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
-++||+.. ......+.++..+||+|..+.+- +.=+|-..+.+.|+.++.. ++..+.+++
T Consensus 26 l~V~nlp~--~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 94 (106)
T 1p27_B 26 LFVTGVHE--EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 94 (106)
T ss_dssp EEEECCCT--TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred EEEeCCCC--CCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcE
Confidence 57888854 23356688888999999888863 2235677899999999864 555555554
No 114
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=65.81 E-value=21 Score=24.06 Aligned_cols=64 Identities=14% Similarity=0.310 Sum_probs=45.1
Q ss_pred CCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecC-CcCEEEecCHHHHHHHHHh-cccccccCCc
Q 040102 39 MALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG-SVPCIVACSPETAKEILKT-HETSFCDRPI 103 (308)
Q Consensus 39 ~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g-~~~~vvi~d~e~~~evl~~-~~~~f~~Rp~ 103 (308)
...-++||++.- ......+.++..+||+|..+.+. +.-+|...+++.++.++.. ++..+.+|+.
T Consensus 10 ~~~l~V~nlp~~-~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 75 (96)
T 2kvi_A 10 KSRLFIGNLPLK-NVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGKKL 75 (96)
T ss_dssp CEEEEEESSTTS-CCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBTTTB
T ss_pred CCEEEEeCCCcc-cCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 335578998630 22356788888899999888864 3556677899999999974 5566666653
No 115
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=65.71 E-value=8.9 Score=24.52 Aligned_cols=58 Identities=10% Similarity=0.194 Sum_probs=38.4
Q ss_pred eeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHhcccccccCC
Q 040102 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 43 llGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
++||++. ......+.+...+||+|..+.+-. --.|-..+++.++.++......+.+|+
T Consensus 4 ~v~nlp~--~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 70 (77)
T 1uaw_A 4 FIGGLSW--QTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKT 70 (77)
T ss_dssp EEESCCS--SCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCC
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEE
Confidence 5777753 223456778888999987777532 224556799999999876555555554
No 116
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=65.59 E-value=16 Score=25.41 Aligned_cols=62 Identities=10% Similarity=0.141 Sum_probs=43.7
Q ss_pred CCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHhcccccccCC
Q 040102 39 MALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 39 ~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
...=++||+.. ......+.++..+||+|..+.+-. -=+|...+.+.++.++...+..+.+|+
T Consensus 25 ~~~lfV~nLp~--~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~ 95 (109)
T 2rs2_A 25 GCKMFIGGLSW--QTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKT 95 (109)
T ss_dssp -CCEEEESCCT--TCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEE
T ss_pred CCEEEEeCCCC--CCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEE
Confidence 34558898853 233566888888999998888643 236778899999999976655555553
No 117
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=65.42 E-value=14 Score=26.12 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=43.0
Q ss_pred CCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC-------cCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 41 LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS-------VPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 41 ~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~-------~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
--++||++. .--...+.++..+||+|..+++-. -=+|-..+++.|+.++.. ++..+.+|+
T Consensus 7 ~lfV~nLp~--~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~ 74 (115)
T 4f25_A 7 NIFIKNLDK--SIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRK 74 (115)
T ss_dssp EEEEESCCT--TCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred EEEECCCCC--CCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 468898863 223567888889999998877642 236788899999999864 555555554
No 118
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=65.05 E-value=18 Score=25.46 Aligned_cols=65 Identities=17% Similarity=0.292 Sum_probs=45.9
Q ss_pred CCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecC---CcCEEEecCHHHHHHHHHh---cccccccCCc
Q 040102 37 SPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---SVPCIVACSPETAKEILKT---HETSFCDRPI 103 (308)
Q Consensus 37 gP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvi~d~e~~~evl~~---~~~~f~~Rp~ 103 (308)
.|...-++||++. ......+.++...||.|..+++- +.=+|-..+++.|+.++.. ++..+.+|+.
T Consensus 14 ~~~~~LfV~nLp~--~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l 84 (105)
T 1sjq_A 14 VPSRVIHIRKLPI--DVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 84 (105)
T ss_dssp CCCCEEEECSCCT--TSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEEC
T ss_pred CCCCEEEEeCCCC--CCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3445668899864 23356788888999999988865 3457778899999998863 2345666664
No 119
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=64.81 E-value=20 Score=24.47 Aligned_cols=62 Identities=11% Similarity=0.104 Sum_probs=44.3
Q ss_pred CCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecC-CcCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 39 MALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG-SVPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 39 ~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g-~~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
...-++||++. ......+.++..+||+|..+.+- +.=+|-..+++.++.++.. ++..+.+++
T Consensus 11 ~~~l~V~nl~~--~~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (103)
T 2dgu_A 11 VKVLFVRNLAN--TVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGEN 74 (103)
T ss_dssp CCCEEEECCCT--TCCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCEEEEeCCCC--CCCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccCCCE
Confidence 34568899864 22356788888899999988865 3455667899999999874 555666654
No 120
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=64.63 E-value=30 Score=25.69 Aligned_cols=62 Identities=11% Similarity=0.202 Sum_probs=44.9
Q ss_pred CCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCCc---------CEEEecCHHHHHHHHHh-cccccccCC
Q 040102 39 MALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSV---------PCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 39 ~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~---------~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
...-++||++. ......+.++...||+|..+.+... =+|-..+.+.++.++.. ++..+.+|+
T Consensus 70 ~~~l~v~nl~~--~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 141 (158)
T 2kn4_A 70 MTSLKVDNLTY--RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 141 (158)
T ss_dssp CCEEEEESCCT--TCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSE
T ss_pred CCEEEEeCCCC--CCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34567888853 2235667788889999998887543 36778899999999975 566666665
No 121
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=64.54 E-value=17 Score=24.90 Aligned_cols=62 Identities=18% Similarity=0.249 Sum_probs=42.3
Q ss_pred CCCCeeeecccCC----CCchHHHHHHHHhcCCeeEEecC---------CcCEEEecCHHHHHHHHHh-ccccccc
Q 040102 39 MALPIIGHLHLLA----PIPHQALHKLSIRYGPLIHLFLG---------SVPCIVACSPETAKEILKT-HETSFCD 100 (308)
Q Consensus 39 ~~~PllGnl~~l~----~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvi~d~e~~~evl~~-~~~~f~~ 100 (308)
...-++||++... ......+.+...+||+|..+++- +-=+|...+++.++.++.. ++..+.+
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 3456788887542 11235677888899999999874 2336778899999999853 4445544
No 122
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.26 E-value=20 Score=24.17 Aligned_cols=65 Identities=11% Similarity=0.055 Sum_probs=44.9
Q ss_pred CCCCCCCeeeecccCCCCchHHHHHHHHhcCCee-EEecCC---------cCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 36 PSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLI-HLFLGS---------VPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 36 PgP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~-~~~~g~---------~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
+.|...-++||++. ......+.++..+||+|. .+.+-. --+|-..+++.++.++.. ++..+.+|+
T Consensus 6 ~~~~~~l~V~nLp~--~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 6 SGMAASLWMGDLEP--YMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp CSSSSEEEECSCCT--TCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred CCCccEEEEeCCCC--CCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 44555678899864 233567788888999988 777642 235677899999999973 455555554
No 123
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.93 E-value=28 Score=22.92 Aligned_cols=65 Identities=14% Similarity=0.096 Sum_probs=45.8
Q ss_pred CCCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC-cCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 36 PSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS-VPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 36 PgP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~-~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
+.+...-++||++. ......+.++..+||+|..+.+-. .-+|-..+++.++.++.. ++..+.+|+
T Consensus 6 ~~~~~~l~V~nlp~--~~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 72 (90)
T 2dnp_A 6 SGNTWKIFVGNVSA--ACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKR 72 (90)
T ss_dssp SCCSCCEEEESCCT--TCCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCEEEEeCCCC--CCCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 34455668899864 233567888888999998888653 455667899999999863 555565554
No 124
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.92 E-value=30 Score=23.24 Aligned_cols=64 Identities=8% Similarity=0.122 Sum_probs=45.8
Q ss_pred CCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHhcccccccCCc
Q 040102 38 PMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKTHETSFCDRPI 103 (308)
Q Consensus 38 P~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~~~~~f~~Rp~ 103 (308)
|...-++||+.. ......+.++..+||+|..+.+-. .-+|...+.+.++.++.-++..+.+|+.
T Consensus 9 ~~~~l~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l 81 (99)
T 2dgs_A 9 KSNKIFVGGIPH--NCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKV 81 (99)
T ss_dssp SCCEEEEESCCS--SCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBC
T ss_pred CCCEEEEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEE
Confidence 344568899864 223566888888999998888732 2356778999999999766666766653
No 125
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.87 E-value=21 Score=24.43 Aligned_cols=67 Identities=15% Similarity=0.180 Sum_probs=46.3
Q ss_pred CCCCCCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC----------cCEEEecCHHHHHHHHHhcccccccCC
Q 040102 33 SLPPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS----------VPCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 33 ~~pPgP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~----------~~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
+.|+.|...-++||+..- .....+.++...|| |..+.+-. .-+|...+++.++.++.-++..+.+|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~--~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 85 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYD--VTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKR 85 (104)
T ss_dssp CCCSSSCEEEEEESCCSS--CCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEE
T ss_pred CCCCCCCCEEEEeCCCCc--CCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcE
Confidence 344445556788998642 23566888888999 98888742 235777899999999955555666654
No 126
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.63 E-value=18 Score=24.84 Aligned_cols=64 Identities=13% Similarity=0.249 Sum_probs=45.8
Q ss_pred CCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHhcccccccCC
Q 040102 37 SPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 37 gP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
.+...-++||++. ......+.++..+||+|..+.+-. .-+|...+++.++.++..++..+.+|+
T Consensus 14 ~~~~~l~V~nlp~--~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 86 (105)
T 2dh8_A 14 DEIGKLFVGGLDW--STTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRN 86 (105)
T ss_dssp SSSSEECCBSCCT--TCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEE
T ss_pred CCCCEEEEeCCCC--CCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEE
Confidence 3445567888853 233567888888999998877643 235777899999999987666776665
No 127
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=63.51 E-value=31 Score=23.15 Aligned_cols=60 Identities=17% Similarity=0.076 Sum_probs=42.3
Q ss_pred CCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---cCEEEecCHHHHHHHHHh-cccccc
Q 040102 38 PMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---VPCIVACSPETAKEILKT-HETSFC 99 (308)
Q Consensus 38 P~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---~~~vvi~d~e~~~evl~~-~~~~f~ 99 (308)
|...-++||++.- .....+.++..+||+|..+++-. .-+|...+++.++.++.. ++..+.
T Consensus 16 ~~~~l~V~nlp~~--~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (97)
T 1why_A 16 PTTRLWVGGLGPN--TSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLG 79 (97)
T ss_dssp CCSCEEEECCCSS--CCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCEEEEeCCCCC--CCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 4456688998642 23567888888999999888654 345666799999998863 444554
No 128
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=63.23 E-value=33 Score=23.40 Aligned_cols=63 Identities=14% Similarity=0.242 Sum_probs=45.7
Q ss_pred CCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCCc----------CEEEecCHHHHHHHHHh--cccccccCCc
Q 040102 39 MALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSV----------PCIVACSPETAKEILKT--HETSFCDRPI 103 (308)
Q Consensus 39 ~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~----------~~vvi~d~e~~~evl~~--~~~~f~~Rp~ 103 (308)
...-++||++. ......+.++..+||+|..+.+-.. =+|-..+++.++.++.. ++..+.+|+.
T Consensus 15 ~~~l~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 15 TSKILVRNIPF--QANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCCEEEESCCT--TCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred CCEEEEeCCCC--cCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34568899864 2335668888889999999887543 25667899999999975 5666766653
No 129
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.89 E-value=24 Score=24.21 Aligned_cols=61 Identities=15% Similarity=0.135 Sum_probs=44.3
Q ss_pred CCCeeeecccCCCCchHHHHHHHHhcCCeeE-EecC--------CcCEEEecCHHHHHHHHHhcccccccCC
Q 040102 40 ALPIIGHLHLLAPIPHQALHKLSIRYGPLIH-LFLG--------SVPCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 40 ~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~-~~~g--------~~~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
..-++||++. ......+.++...||.|.. +.+- +--+|...+++.++.++..++..+.+|+
T Consensus 16 ~~l~V~nLp~--~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~ 85 (104)
T 1wg5_A 16 GFVRLRGLPF--GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 85 (104)
T ss_dssp CEEEEESCCT--TCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSC
T ss_pred CEEEEeCCCC--CCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcE
Confidence 4558899864 2335678888889998765 5542 2356778899999999988777777775
No 130
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.43 E-value=25 Score=23.86 Aligned_cols=66 Identities=15% Similarity=0.177 Sum_probs=46.3
Q ss_pred CCCCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecC-------CcCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 35 PPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG-------SVPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 35 pPgP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g-------~~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
.+.+...-++||++. ......+.++..+||+|..+.+- +.-+|...+++.|+.++.. ++..+.+++
T Consensus 11 ~~~~~~~l~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDD--GIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 84 (103)
T ss_dssp CCSSCCCEEEECCCT--TCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCCCEEEEeCCCC--CCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 344556778999864 22356678888899999888764 2345777899999999874 555666665
No 131
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.25 E-value=20 Score=25.08 Aligned_cols=62 Identities=13% Similarity=0.124 Sum_probs=44.4
Q ss_pred CCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCCc---------CEEEecCHHHHHHHHHhcccccccCC
Q 040102 39 MALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSV---------PCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 39 ~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~---------~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
...-++||++. ......+.++..+||+|..+++-.. -+|-..+++.++.++..-...+.+|+
T Consensus 17 ~~~l~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~ 87 (116)
T 2cqd_A 17 FTKIFVGGLPY--HTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRK 87 (116)
T ss_dssp SSEEEEECCCS--SCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEE
T ss_pred CCEEEEeCCCC--CCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEE
Confidence 34568899864 2235668888889999988887542 36777899999999976444565554
No 132
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.62 E-value=23 Score=23.57 Aligned_cols=63 Identities=13% Similarity=0.308 Sum_probs=43.3
Q ss_pred CCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHh-cccccccC
Q 040102 37 SPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT-HETSFCDR 101 (308)
Q Consensus 37 gP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~-~~~~f~~R 101 (308)
.|...-++||++. ......+.++..+||+|..+.+-. .-+|-..+++.++.++.. ++..+.+|
T Consensus 14 ~~~~~l~V~nlp~--~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 86 (94)
T 2e5h_A 14 PSKSTVYVSNLPF--SLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGR 86 (94)
T ss_dssp CCTTSEEEESCCT--TSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTE
T ss_pred CCCCEEEEECCCC--CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 3445678899863 333566888888999998888742 336778899999999853 33444443
No 133
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=61.39 E-value=21 Score=24.00 Aligned_cols=62 Identities=15% Similarity=0.178 Sum_probs=43.9
Q ss_pred CCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecC------------CcCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 39 MALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG------------SVPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 39 ~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g------------~~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
...-++||++. ......+.++..+||+|..+.+- +.-+|...+++.++.++.. ++..+.+|+
T Consensus 5 ~~~l~V~nLp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (98)
T 2cpf_A 5 SSGLFIKNLNF--STTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHK 79 (98)
T ss_dssp CCCEEEESCCT--TCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEE
T ss_pred CCEEEEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 34567888863 23356778888899999888764 2346777899999999975 555665554
No 134
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.24 E-value=30 Score=22.36 Aligned_cols=61 Identities=13% Similarity=0.140 Sum_probs=42.5
Q ss_pred CCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---cCEEEecCHHHHHHHHHh--cccccccCC
Q 040102 40 ALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---VPCIVACSPETAKEILKT--HETSFCDRP 102 (308)
Q Consensus 40 ~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---~~~vvi~d~e~~~evl~~--~~~~f~~Rp 102 (308)
..-++||++. ......+.++..+||+|..+.+-. .-+|-..+++.++.++.. ++..+.+++
T Consensus 13 ~~l~V~~l~~--~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 13 TTLYVGGLGD--TITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp CCEEEECCTT--TSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred cEEEEcCCCC--CCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 4568899864 233567888888999998888653 445666799999999974 444454443
No 135
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.52 E-value=30 Score=23.40 Aligned_cols=65 Identities=18% Similarity=0.252 Sum_probs=45.0
Q ss_pred CCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHh-cccccccCCc
Q 040102 37 SPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT-HETSFCDRPI 103 (308)
Q Consensus 37 gP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~-~~~~f~~Rp~ 103 (308)
.+...-++||++. ......+.++..+||+|..+.+-. .=+|...+++.|+.++.. ++..+.+|+.
T Consensus 10 ~~~~~l~v~nLp~--~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 1x5s_A 10 SDEGKLFVGGLSF--DTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 84 (102)
T ss_dssp CCCSEEEEESCCT--TCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCC
T ss_pred CCCCEEEEECCCC--CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3445678899863 233566788888999998888744 235667799999999853 5556666653
No 136
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.89 E-value=13 Score=26.13 Aligned_cols=60 Identities=15% Similarity=0.172 Sum_probs=43.1
Q ss_pred CCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHhcccccccCC
Q 040102 41 LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 41 ~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
.-++||+.. ......+.++...||+|..+.+-. .=+|...+++.++.++..++..+.+|+
T Consensus 29 ~l~V~nLp~--~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~ 97 (116)
T 1x4b_A 29 KLFIGGLSF--ETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRV 97 (116)
T ss_dssp EEEEECCTT--CCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEE
T ss_pred EEEEeCCCC--CCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEE
Confidence 347888853 233566888889999988877633 235667899999999977666666664
No 137
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=59.39 E-value=29 Score=24.42 Aligned_cols=64 Identities=22% Similarity=0.253 Sum_probs=45.5
Q ss_pred CCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC--------cCEEEecCHHHHHHHHHh-cccccccCCc
Q 040102 38 PMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS--------VPCIVACSPETAKEILKT-HETSFCDRPI 103 (308)
Q Consensus 38 P~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~--------~~~vvi~d~e~~~evl~~-~~~~f~~Rp~ 103 (308)
+...-++||+.. ......+.++..+||+|..+.+-. .=+|...+.+.|+.++.. ++..+.+++.
T Consensus 6 ~~~~l~V~nLp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 78 (116)
T 2fy1_A 6 HPGKLFIGGLNR--ETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAI 78 (116)
T ss_dssp SCCEEEEECCTT--TCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBC
T ss_pred CCCEEEEeCCCC--CCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 344567898854 233567888888999988877643 335777899999999964 5666777764
No 138
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=58.80 E-value=28 Score=24.23 Aligned_cols=61 Identities=15% Similarity=0.126 Sum_probs=42.6
Q ss_pred CCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCCc---------CEEEecCHHHHHHHHHh-cccccccCC
Q 040102 40 ALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSV---------PCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 40 ~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~---------~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
..-++||+.. ......+.++..+||+|..+.+-.. =+|...+++.++.++.. ++..+.+|+
T Consensus 26 ~~l~V~nLp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 96 (115)
T 2cpz_A 26 ANLFIYHLPQ--EFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKR 96 (115)
T ss_dssp CCEEEESCCS--SCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred cEEEEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 3568899864 2235678888889999888776432 35677899999999854 455555554
No 139
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=58.47 E-value=8.2 Score=27.13 Aligned_cols=63 Identities=10% Similarity=0.144 Sum_probs=43.9
Q ss_pred CCCCCeeeecccCCCCchHHHH---HHHHhcCCeeEEecCC------------cCEEEecCHHHHHHHHHh-cccccccC
Q 040102 38 PMALPIIGHLHLLAPIPHQALH---KLSIRYGPLIHLFLGS------------VPCIVACSPETAKEILKT-HETSFCDR 101 (308)
Q Consensus 38 P~~~PllGnl~~l~~~~~~~~~---~~~~~yG~i~~~~~g~------------~~~vvi~d~e~~~evl~~-~~~~f~~R 101 (308)
+...-++||++.- .....+. ++..+||+|..+.+-. .=+|...+++.|+.++.. ++..+.+|
T Consensus 14 ~~~~l~V~nLp~~--~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 14 QKNLVFVVGLSQR--LADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CSSCEEEEEECTT--TCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEECCCCC--CCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3445688998642 2234555 7778899998887642 335677899999999976 66777666
Q ss_pred C
Q 040102 102 P 102 (308)
Q Consensus 102 p 102 (308)
+
T Consensus 92 ~ 92 (111)
T 2cpi_A 92 T 92 (111)
T ss_dssp E
T ss_pred E
Confidence 5
No 140
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=58.22 E-value=42 Score=24.63 Aligned_cols=62 Identities=16% Similarity=0.257 Sum_probs=43.8
Q ss_pred CCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecC----CcCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 39 MALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG----SVPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 39 ~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g----~~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
...-++||++.- .....+.++...||+|..+.+. +--+|-..+++.++.++.. ++..+.+|+
T Consensus 73 ~~~l~V~nl~~~--~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 139 (150)
T 2i2y_A 73 DCKVYVGNLGNN--GNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCR 139 (150)
T ss_dssp SCEEEEESCCSC--CSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSC
T ss_pred CCEEEEeCCCCC--CCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 345688998642 2345677888889999888874 3446777899999999863 555666665
No 141
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=57.93 E-value=20 Score=23.82 Aligned_cols=58 Identities=12% Similarity=0.180 Sum_probs=38.8
Q ss_pred eeeecccCCCCchHHHHHHHHhcC--CeeEEecCC---------cCEEEecCHHHHHHHHH-hcccccccCC
Q 040102 43 IIGHLHLLAPIPHQALHKLSIRYG--PLIHLFLGS---------VPCIVACSPETAKEILK-THETSFCDRP 102 (308)
Q Consensus 43 llGnl~~l~~~~~~~~~~~~~~yG--~i~~~~~g~---------~~~vvi~d~e~~~evl~-~~~~~f~~Rp 102 (308)
++||+.. ......+.++..+|| ++..+++-. -=+|...+.+.++.++. -++..+.+|+
T Consensus 5 ~V~nL~~--~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 74 (90)
T 3p5t_L 5 YIGNLTW--WTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQN 74 (90)
T ss_dssp EEESCCT--TCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCC
T ss_pred EEeCCCC--CCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEE
Confidence 6788753 223567888888999 887777532 13566779999999884 3445666665
No 142
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.93 E-value=37 Score=22.45 Aligned_cols=63 Identities=19% Similarity=0.233 Sum_probs=44.2
Q ss_pred CCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC-cCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 38 PMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS-VPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 38 P~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~-~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
+...-++||++. ......+.++..+||+|..+.+-. .=+|-..+++.++.++.. ++..+.+|+
T Consensus 9 ~~~~l~V~nLp~--~~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 73 (92)
T 2dgt_A 9 ASTKLHVGNISP--TCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKR 73 (92)
T ss_dssp SSEEEEEESCCS--SCCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEETTEE
T ss_pred CCCEEEEeCCCC--CCCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 334568899864 234567888888999998888653 445566799999998864 555665554
No 143
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.68 E-value=13 Score=25.87 Aligned_cols=61 Identities=10% Similarity=0.131 Sum_probs=42.0
Q ss_pred CCCeeeecccCCCCchHHHHHHHHhcCCeeEEecC-------CcCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 40 ALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG-------SVPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 40 ~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g-------~~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
..=++||+.. ......+.++..+||+|..+.+- +.=+|...+++.++.++.. ++..+.+|+
T Consensus 30 ~~l~V~nLp~--~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 98 (109)
T 2err_A 30 KRLHVSNIPF--RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRK 98 (109)
T ss_dssp CEEEEESCCT--TCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEE
T ss_pred CEEEEECCCC--cCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 3457888853 23356788888899998887764 2345667899999998864 455555554
No 144
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=57.67 E-value=19 Score=25.78 Aligned_cols=59 Identities=12% Similarity=0.079 Sum_probs=42.0
Q ss_pred CCCeeeecccCCCCchHHHHHHHHhcCCeeEEecC---CcCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 40 ALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---SVPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 40 ~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
..-++||+ ......+.++..+||+|..+.++ +.-+|...+.+.|+.++.. ++..+.+|+
T Consensus 40 ~~lfVgnl----~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~ 102 (121)
T 2bz2_A 40 NTLYVYGE----DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQ 102 (121)
T ss_dssp CEEEEECS----SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCB
T ss_pred CEEEEcCC----CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34578883 23356788888999999888876 3445667799999998854 555665554
No 145
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=57.03 E-value=30 Score=25.67 Aligned_cols=60 Identities=13% Similarity=0.186 Sum_probs=42.9
Q ss_pred CCeeeecccCCCCchHHHHHHHHhcCCeeEEecCCc---------CEEEecCHHHHHHHHHhcccccccCC
Q 040102 41 LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSV---------PCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 41 ~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~---------~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
.-++||++. ......+.+....||+|..+.+-.. =+|-..+++.|..++..++..+.+|+
T Consensus 89 ~l~V~nlp~--~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~ 157 (167)
T 2cjk_A 89 KIFVGGIGP--DVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRK 157 (167)
T ss_dssp EEEEEEECT--TCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSC
T ss_pred eEEECCCCC--CCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeE
Confidence 457788753 2235567788889999988876532 35677799999999986666666665
No 146
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.87 E-value=25 Score=23.89 Aligned_cols=62 Identities=11% Similarity=0.070 Sum_probs=43.1
Q ss_pred CCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC-------cCEEEecCHHHHHHHHH-hcccccccCC
Q 040102 39 MALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS-------VPCIVACSPETAKEILK-THETSFCDRP 102 (308)
Q Consensus 39 ~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~-------~~~vvi~d~e~~~evl~-~~~~~f~~Rp 102 (308)
...-++||++. ......+.++..+||+|..+.+-. .=+|...+++.++.++. -++..+.+|+
T Consensus 15 ~~~l~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cqi_A 15 PRTLYVGNLSR--DVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKE 84 (103)
T ss_dssp CCEEEEESCCT--TCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCEEEEeCCCc--cCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCe
Confidence 34568899864 223567888888999998887643 33567789999999986 3445555554
No 147
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.78 E-value=27 Score=23.69 Aligned_cols=60 Identities=17% Similarity=0.236 Sum_probs=40.7
Q ss_pred CCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHh-cccccccC
Q 040102 40 ALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT-HETSFCDR 101 (308)
Q Consensus 40 ~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~-~~~~f~~R 101 (308)
..=++||+.. ......+.++..+||+|..+.+-. .-+|-..+++.++.++.. ++..+.+|
T Consensus 9 ~~l~V~nlp~--~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (104)
T 1p1t_A 9 RSVFVGNIPY--EATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGR 78 (104)
T ss_dssp SCEEEESCCT--TSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSS
T ss_pred cEEEEeCCCC--cCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 3457888853 233566888888999988877642 235677899999999963 44444444
No 148
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=56.63 E-value=36 Score=22.93 Aligned_cols=60 Identities=15% Similarity=0.303 Sum_probs=41.0
Q ss_pred CCeeeecccCCCCchHHHHHHHHhcCCeeEEecC-CcCEEEecCHHHHHHHHHh-cccccccC
Q 040102 41 LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG-SVPCIVACSPETAKEILKT-HETSFCDR 101 (308)
Q Consensus 41 ~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g-~~~~vvi~d~e~~~evl~~-~~~~f~~R 101 (308)
.=++||+..- ......+.++..+||+|..+.+. +.-+|...+.+.++.++.. ++..+.+|
T Consensus 24 ~l~V~nLp~~-~~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (97)
T 2xnq_A 24 RLFIGNLPLK-NVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEXESQEMNFGK 85 (97)
T ss_dssp EEEEESCCSS-CCCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHHHTTSEETTE
T ss_pred EEEEeCCCcc-cCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 4588998630 22356688888899999988874 3455667899999999863 33344344
No 149
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=56.56 E-value=33 Score=22.90 Aligned_cols=60 Identities=15% Similarity=0.198 Sum_probs=41.1
Q ss_pred CCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 41 LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 41 ~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
.=++||+.. ......+.++..+||+|..+.+-. .-+|-..+++.++.++.. ++..+.+|+
T Consensus 4 ~l~V~nLp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 73 (96)
T 2x1f_A 4 VVYLGSIPY--DQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRF 73 (96)
T ss_dssp EEEEESCCT--TCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEECCCC--CCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 346788753 223566888888999999988742 235677899999999853 444454443
No 150
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.53 E-value=31 Score=23.14 Aligned_cols=61 Identities=11% Similarity=0.103 Sum_probs=41.4
Q ss_pred CCCeeeecccCCCCchHHH----HHHHHhcCCeeEEecC------CcCEEEecCHHHHHHHHH-hcccccccCC
Q 040102 40 ALPIIGHLHLLAPIPHQAL----HKLSIRYGPLIHLFLG------SVPCIVACSPETAKEILK-THETSFCDRP 102 (308)
Q Consensus 40 ~~PllGnl~~l~~~~~~~~----~~~~~~yG~i~~~~~g------~~~~vvi~d~e~~~evl~-~~~~~f~~Rp 102 (308)
..-++||++.- .....+ .+...+||+|..+.+- +.-+|...+++.++.++. -++..+.+|+
T Consensus 10 ~~l~V~nL~~~--~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 10 ADVQVSNIDYR--LSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp EEEEEESCCTT--SCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CEEEEECCCCC--CCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 35688998643 123334 4888899999988875 234567789999999886 3455565554
No 151
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=56.52 E-value=22 Score=26.89 Aligned_cols=59 Identities=8% Similarity=0.135 Sum_probs=42.1
Q ss_pred CeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 42 PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
-+|||++. ......+.++..+||+|..+.+-. .-+|...+++.++.++.. ++..+.+++
T Consensus 75 l~V~nLp~--~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 143 (165)
T 1rk8_A 75 LFVTSIHE--EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 143 (165)
T ss_dssp EEEESCCT--TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCC--CCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 57888864 334567888889999998887642 346777899999999864 555555554
No 152
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=56.51 E-value=17 Score=25.76 Aligned_cols=59 Identities=15% Similarity=0.165 Sum_probs=41.4
Q ss_pred CeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHhcccccccCC
Q 040102 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 42 PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
-++||+.. ......+.++..+||+|..+.+-. .=+|...+.+.++.++.-++..+.+++
T Consensus 39 l~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 106 (124)
T 2jwn_A 39 VYVGNVDY--GSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRT 106 (124)
T ss_dssp EEEEEECT--TCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEE
T ss_pred EEEeCCCC--CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeE
Confidence 37888753 223566888888999998877632 236778899999999944555565554
No 153
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.50 E-value=19 Score=25.11 Aligned_cols=59 Identities=12% Similarity=0.120 Sum_probs=40.6
Q ss_pred CeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHhcccccccCC
Q 040102 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 42 PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
-++||+.. ......+.++..+||+|..+.+-. .=+|...+++.++.++.-++..+.+|+
T Consensus 28 l~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 95 (114)
T 2cq4_A 28 VFCMQLAA--RIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVP 95 (114)
T ss_dssp EEEESCCT--TCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEE
T ss_pred EEEeCCCC--CCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeE
Confidence 37888853 223556888889999999888741 235677899999988844555554443
No 154
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.43 E-value=43 Score=22.62 Aligned_cols=63 Identities=11% Similarity=0.201 Sum_probs=45.1
Q ss_pred CCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHh-cccccccCCc
Q 040102 39 MALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT-HETSFCDRPI 103 (308)
Q Consensus 39 ~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~-~~~~f~~Rp~ 103 (308)
...-++||+.. ......+.++..+||+|..+.+-. .-+|...+++.|+.++.. ++..+.+|+.
T Consensus 13 ~~~l~V~nLp~--~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 13 MITLKVDNLTY--RTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp CCEEEEESCCT--TCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CeEEEEeCCCC--CCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 34568899864 233567888888999999888742 346777899999999873 5566666653
No 155
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.40 E-value=22 Score=24.16 Aligned_cols=64 Identities=16% Similarity=0.249 Sum_probs=44.4
Q ss_pred CCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 37 SPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 37 gP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
.|...-++||++. ......+.++..+||+|..+.+-. .=+|...+++.|+.++.. ++..+.+|+
T Consensus 10 ~~~~~l~V~nLp~--~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 2cqb_A 10 TTKRVLYVGGLAE--EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 83 (102)
T ss_dssp CCCSCEEEESCCS--SCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCEEEEeCCCC--CCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 3445668899864 233567888888999998888732 235666799999999854 555565554
No 156
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=56.06 E-value=24 Score=24.20 Aligned_cols=62 Identities=13% Similarity=0.187 Sum_probs=42.6
Q ss_pred CCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC--------cCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 39 MALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS--------VPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 39 ~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~--------~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
...-++||++. ......+.++...||+|..+.+-. .=+|-..+++.++.++.. ++..+.+|+
T Consensus 29 ~~~l~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 99 (107)
T 3ulh_A 29 GGKLLVSNLDF--GVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRP 99 (107)
T ss_dssp SEEEEEESCCT--TCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 34568888853 223566788888999998877541 336677799999999874 555555554
No 157
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=55.91 E-value=27 Score=26.31 Aligned_cols=59 Identities=14% Similarity=0.192 Sum_probs=40.6
Q ss_pred CeeeecccCCCCchHHHHHHHHhcC--CeeEEecC-----C----cCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 42 PIIGHLHLLAPIPHQALHKLSIRYG--PLIHLFLG-----S----VPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 42 PllGnl~~l~~~~~~~~~~~~~~yG--~i~~~~~g-----~----~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
-++||+.. ..-...+.++..+|| .|..+++- + -=+|...+++.++.++.. ++..+.+|+
T Consensus 58 lfVgnLp~--~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~ 128 (156)
T 3n9u_C 58 VYVGSFSW--WTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEK 128 (156)
T ss_dssp EEEECCCT--TCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEE
T ss_pred EEEeCCCC--CCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 36777643 223567888888999 88888863 2 236778899999999976 555554443
No 158
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=55.88 E-value=25 Score=23.37 Aligned_cols=63 Identities=17% Similarity=0.297 Sum_probs=43.8
Q ss_pred CCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC--------cCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 38 PMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS--------VPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 38 P~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~--------~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
+...-++||++. ......+.++..+||+|..+++-. .=+|...+++.++.++.. ++..+.+|+
T Consensus 15 ~~~~l~v~nlp~--~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (95)
T 2ywk_A 15 ADRTVFVGNLEA--RVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRP 86 (95)
T ss_dssp GGGEEEEECCCT--TCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEECCCC--CCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCE
Confidence 334568898864 233567888889999998888743 236777899999999863 445555554
No 159
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.83 E-value=41 Score=22.11 Aligned_cols=65 Identities=17% Similarity=0.198 Sum_probs=44.9
Q ss_pred CCCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecC-CcCEEEecCHHHHHHHHH-hcccccccCC
Q 040102 36 PSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG-SVPCIVACSPETAKEILK-THETSFCDRP 102 (308)
Q Consensus 36 PgP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g-~~~~vvi~d~e~~~evl~-~~~~~f~~Rp 102 (308)
+.|...-++||++. ......+.++..+||+|..+.+- +.-+|-..+++.++.++. -++..+.+|+
T Consensus 5 ~~~~~~l~V~nlp~--~~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 71 (90)
T 2dnq_A 5 SSGMVKLFIGNLPR--EATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVN 71 (90)
T ss_dssp SSCCEEEEEESCCS--SCCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCCeEEEEeCCCC--CCCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCccCCcE
Confidence 34445668899864 23356788888899999888864 345566779999999885 3444565665
No 160
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=55.28 E-value=44 Score=22.94 Aligned_cols=59 Identities=12% Similarity=0.023 Sum_probs=42.8
Q ss_pred CCCeeeecccCCCCchHHHHHHHHhcCCeeEEecC--CcCEEEecCHHHHHHHHHh-ccccccc
Q 040102 40 ALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG--SVPCIVACSPETAKEILKT-HETSFCD 100 (308)
Q Consensus 40 ~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g--~~~~vvi~d~e~~~evl~~-~~~~f~~ 100 (308)
..-++||+.. ......+.++..+||+|..+.+- +.-+|...+++.++.++.. ++..+.+
T Consensus 16 ~~l~V~nLp~--~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 16 NRVVVSGLPP--SGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp CEEEEESCCS--SCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred CEEEEeCCCC--CCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 3568899863 33456788888999999888764 4567777899999999874 4444544
No 161
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=55.22 E-value=36 Score=23.63 Aligned_cols=63 Identities=10% Similarity=0.053 Sum_probs=44.2
Q ss_pred CCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCCc---------CEEEecCHHHHHHHHHh-cccccccCC
Q 040102 38 PMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSV---------PCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 38 P~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~---------~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
+...-+|||+.. ......+.++..+||+|..+.+-.. =+|...+++.++.++.. ++..+.+|+
T Consensus 14 ~~~~l~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (115)
T 2dgo_A 14 NHFHVFVGDLSP--EITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 86 (115)
T ss_dssp TCEEEEEESCCT--TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred CCcEEEEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 344568898853 2235668888889999988876432 36777899999999964 455565554
No 162
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.06 E-value=33 Score=22.82 Aligned_cols=60 Identities=8% Similarity=0.195 Sum_probs=41.4
Q ss_pred CCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC----cCEEEecCHHHHHHHHHhcccccccCC
Q 040102 41 LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS----VPCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 41 ~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~----~~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
.-++||+.. ......+.++..+||+|..+..-. --+|-..+++.++.++.-++..+.+|+
T Consensus 10 ~l~V~nl~~--~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~l~g~~~~g~~ 73 (94)
T 2e5g_A 10 SVFVSGFPR--GVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGHR 73 (94)
T ss_dssp EEEEECCCT--TCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHTCSCCEETTEE
T ss_pred EEEEECCCC--CCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHhcCCeEECCEE
Confidence 347888853 333567888888999988774322 234566799999999975556666664
No 163
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=54.62 E-value=39 Score=23.22 Aligned_cols=61 Identities=10% Similarity=0.134 Sum_probs=42.8
Q ss_pred CCCeeeecccCCCCchHHHHHHHHhcCCeeEEecC---CcCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 40 ALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---SVPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 40 ~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
..-++||+.. ......+.++..+||+|..+.+- +.=+|...+++.+..++.. ++..+.+++
T Consensus 26 ~~l~V~nl~~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 90 (109)
T 1x4g_A 26 CTVYCGGIAS--GLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHV 90 (109)
T ss_dssp CEEEEECCSS--CCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred cEEEEeCCCC--CCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 3457898864 22356778888899999888874 3456677899999998854 555555554
No 164
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=54.52 E-value=22 Score=24.21 Aligned_cols=67 Identities=16% Similarity=0.179 Sum_probs=45.5
Q ss_pred CCCCCCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHhcccccccCC
Q 040102 33 SLPPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 33 ~~pPgP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
..++.|...-++||++. ......+.++..+|| |..+++-. .=+|...+++.++.++.-++..+.+|+
T Consensus 9 ~~~~~~~~~l~V~nLp~--~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 84 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPF--NTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRS 84 (103)
T ss_dssp CCCSSSCEEEEEESCCT--TCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred CCCCCCCeEEEEeCCCC--CCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeE
Confidence 34455555678999864 223556788888897 88777642 235777899999999955555565554
No 165
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=54.47 E-value=39 Score=24.57 Aligned_cols=60 Identities=10% Similarity=0.198 Sum_probs=43.4
Q ss_pred CCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 41 LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 41 ~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
.-+|||+.. ......+.++..+||+|..+.+-. .-+|...+++.++.++.. ++..+.+|+
T Consensus 49 ~l~V~nLp~--~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 118 (135)
T 2lea_A 49 SLKVDNLTY--RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 118 (135)
T ss_dssp CEEEECCCS--SCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSC
T ss_pred EEEEeCCCC--CCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 467888853 233567888888999998888753 247778899999999964 455555554
No 166
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=54.45 E-value=18 Score=28.39 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=43.0
Q ss_pred CeeeecccCCCCchHHHHHHHHhcCCeeEEecC--------CcCEEEecCHHHHHHHHHhcccccccCC
Q 040102 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG--------SVPCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 42 PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g--------~~~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
-++||++. ......+.++...||+|..+++- |-=+|...+++.|+.++...+..+.+|+
T Consensus 112 l~V~nLp~--~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~ 178 (193)
T 2voo_A 112 VYIKGFPT--DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETD 178 (193)
T ss_dssp EEEECCCT--TCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEE
T ss_pred EEecCCCC--cCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEE
Confidence 37888763 33467788888999998887753 2446777899999999976555665554
No 167
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=54.20 E-value=30 Score=23.02 Aligned_cols=54 Identities=11% Similarity=0.280 Sum_probs=37.6
Q ss_pred CCCCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecC----CcCEEEecCHHHHHHH
Q 040102 35 PPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG----SVPCIVACSPETAKEI 90 (308)
Q Consensus 35 pPgP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g----~~~~vvi~d~e~~~ev 90 (308)
++-|+..-++||+.. ......+.+...+||+|..+++- |--+|...+++.|+.+
T Consensus 7 ~~~~~~~l~V~~Lp~--~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTE--DMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp ----CCEEEEESCCT--TCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHH
T ss_pred CCCCCCEEEEeCCCC--CCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHH
Confidence 344555678899864 33356788888899999999876 3456777899999854
No 168
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=53.85 E-value=39 Score=23.37 Aligned_cols=60 Identities=23% Similarity=0.310 Sum_probs=42.4
Q ss_pred CCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHH-hcccccccCC
Q 040102 41 LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILK-THETSFCDRP 102 (308)
Q Consensus 41 ~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~-~~~~~f~~Rp 102 (308)
.-++||+.. ......+.++..+||+|..+.+-. .-+|...+++.++.++. -++..+.+|+
T Consensus 28 ~l~V~nLp~--~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 97 (108)
T 2jrs_A 28 RLYVGSLHF--NITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 97 (108)
T ss_dssp EEEEECCCS--SCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred EEEEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 567899854 233566888888999998877632 34677789999999985 3455555554
No 169
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=53.62 E-value=27 Score=25.76 Aligned_cols=59 Identities=14% Similarity=0.127 Sum_probs=41.5
Q ss_pred CeeeecccCCCCchHHHHHHHHhcCCeeEEecCCc---------CEEEecCHHHHHHHHHh-cccccccCC
Q 040102 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSV---------PCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 42 PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~---------~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
=++||++. ......+.++...||+|..+.+-.. -.|-..+++.++.++.. ++..+.+++
T Consensus 5 l~v~nlp~--~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 73 (167)
T 1fxl_A 5 LIVNYLPQ--NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT 73 (167)
T ss_dssp EEEESCCT--TCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEcCCCC--CCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCce
Confidence 36777753 2235678888889999988876432 36778899999999963 555555554
No 170
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=53.58 E-value=26 Score=23.82 Aligned_cols=58 Identities=12% Similarity=0.124 Sum_probs=40.4
Q ss_pred CeeeecccCCCCchHHHHHHHHhcCCeeEEecCCc----------CEEEecCHHHHHHHHHhcccccccCC
Q 040102 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSV----------PCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 42 PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~----------~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
=++||+..- .....+.++..+|| |..+.+-.. =+|...+.+.++.++.-++..+.+|+
T Consensus 22 l~V~nLp~~--~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~ 89 (100)
T 2j76_E 22 AFLGNLPYD--VTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRR 89 (100)
T ss_dssp EEESCCSSC--CSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBC
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeE
Confidence 368888542 22345777778899 998887432 35777899999999955666666654
No 171
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=53.57 E-value=27 Score=20.27 Aligned_cols=6 Identities=33% Similarity=0.540 Sum_probs=2.4
Q ss_pred HHHhhc
Q 040102 23 SIFRRS 28 (308)
Q Consensus 23 ~~~~~~ 28 (308)
++++++
T Consensus 33 ~~~RRr 38 (44)
T 2ks1_B 33 LFMRRR 38 (44)
T ss_dssp HHHHTT
T ss_pred HHhhhh
Confidence 344333
No 172
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=53.35 E-value=40 Score=24.13 Aligned_cols=64 Identities=17% Similarity=0.302 Sum_probs=44.6
Q ss_pred CCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecC---CcCEEEecCHHHHHHHHHh---cccccccCCc
Q 040102 38 PMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---SVPCIVACSPETAKEILKT---HETSFCDRPI 103 (308)
Q Consensus 38 P~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvi~d~e~~~evl~~---~~~~f~~Rp~ 103 (308)
|...-++||+.. ......+.++...||.|..+.+- +.=+|-..+.+.|..++.. .+..+.+|+.
T Consensus 30 ps~~LfVgNLp~--~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 30 PSRVIHIRKLPI--DVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp CCSEEEEESCCT--TCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred CCCEEEEeCCCC--CCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 344578999864 23356788888999999888765 3456777799999888853 2235666664
No 173
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=53.20 E-value=28 Score=24.11 Aligned_cols=68 Identities=12% Similarity=0.085 Sum_probs=46.9
Q ss_pred CCCCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---cCEEEecCHHHHHHHHHh---cccccccCCc
Q 040102 35 PPSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---VPCIVACSPETAKEILKT---HETSFCDRPI 103 (308)
Q Consensus 35 pPgP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---~~~vvi~d~e~~~evl~~---~~~~f~~Rp~ 103 (308)
.+.|...-++||++.- ......+.++...||.|..+++-. .=+|-..+.+.|..++.. ....+.+|+.
T Consensus 11 ~~~p~~~l~V~nLp~~-~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRG-KNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCS-SSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCC-cCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 3445566789998641 223456888889999999999753 447888899999988863 2234566653
No 174
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=53.18 E-value=31 Score=23.26 Aligned_cols=64 Identities=16% Similarity=0.192 Sum_probs=44.2
Q ss_pred CCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---cCEEEecCHHHHHHHHHh-cccccccCCc
Q 040102 38 PMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---VPCIVACSPETAKEILKT-HETSFCDRPI 103 (308)
Q Consensus 38 P~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---~~~vvi~d~e~~~evl~~-~~~~f~~Rp~ 103 (308)
|...-++||++. ......+.++..+||+|..+++.. .-+|...+++.++.++.. ++..+.+|+.
T Consensus 14 ~~~~l~V~nlp~--~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l 81 (99)
T 2cpj_A 14 QRSRLFVGNLPP--DITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQL 81 (99)
T ss_dssp CTTEEEEESCCT--TCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCC
T ss_pred CCCEEEEeCCCC--CCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceE
Confidence 334568899864 233567888889999998888753 345566799999988854 5555666653
No 175
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=53.02 E-value=31 Score=24.99 Aligned_cols=64 Identities=16% Similarity=0.280 Sum_probs=42.4
Q ss_pred CCCeeeecccC-CC-CchHHHHHHHHhcCCeeEEecC------CcCEEEecCHHHHHHHHHh-cccccccCCc
Q 040102 40 ALPIIGHLHLL-AP-IPHQALHKLSIRYGPLIHLFLG------SVPCIVACSPETAKEILKT-HETSFCDRPI 103 (308)
Q Consensus 40 ~~PllGnl~~l-~~-~~~~~~~~~~~~yG~i~~~~~g------~~~~vvi~d~e~~~evl~~-~~~~f~~Rp~ 103 (308)
..-++||+..- .. ..-..+.+...+||+|..+.+. |.=+|...+++.|..++.. ++..+.+|+.
T Consensus 30 ~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 30 QVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp SEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 34688998642 11 1122456778899999888763 2456778899999998853 4556666653
No 176
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=52.57 E-value=33 Score=22.24 Aligned_cols=61 Identities=11% Similarity=0.189 Sum_probs=40.5
Q ss_pred CCCeeeecccCCCCchHHHHHHHHhc----C-------CeeEEecCC---cCEEEecCHHHHHHHHHhcccccccCC
Q 040102 40 ALPIIGHLHLLAPIPHQALHKLSIRY----G-------PLIHLFLGS---VPCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 40 ~~PllGnl~~l~~~~~~~~~~~~~~y----G-------~i~~~~~g~---~~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
..=++||++.- .....+.++..+| | ++..+++.. .=+|-..+++.++.++.-++..+.+|+
T Consensus 7 ~~l~V~nLp~~--~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~~l~g~~~~g~~ 81 (87)
T 2hzc_A 7 RRLYVGNIPFG--ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQS 81 (87)
T ss_dssp GEEEEESCCTT--CCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred CEEEEeCCCCC--CCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHHhcCCCEECCeE
Confidence 34578888642 2345566666777 8 888888763 446677799999998844445554443
No 177
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=52.43 E-value=24 Score=25.07 Aligned_cols=69 Identities=12% Similarity=0.117 Sum_probs=45.7
Q ss_pred CCCCCCCCCeeeecccCCC--C--ch----HHHHHHHHhcCCeeEEecCC-----cCEEEecCHHHHHHHHHh-cccccc
Q 040102 34 LPPSPMALPIIGHLHLLAP--I--PH----QALHKLSIRYGPLIHLFLGS-----VPCIVACSPETAKEILKT-HETSFC 99 (308)
Q Consensus 34 ~pPgP~~~PllGnl~~l~~--~--~~----~~~~~~~~~yG~i~~~~~g~-----~~~vvi~d~e~~~evl~~-~~~~f~ 99 (308)
.||-|...-+|-|+..... . .. ..+.+...+||.|..+.+-. .=+|-..+++.++.++.. ++..|.
T Consensus 2 ~~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 2 VQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3677888888899876521 1 12 23455556899998888742 335666788888877753 556666
Q ss_pred cCC
Q 040102 100 DRP 102 (308)
Q Consensus 100 ~Rp 102 (308)
+|+
T Consensus 82 GR~ 84 (114)
T 3s6e_A 82 GKM 84 (114)
T ss_dssp TEE
T ss_pred CEE
Confidence 665
No 178
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.18 E-value=49 Score=22.55 Aligned_cols=62 Identities=6% Similarity=0.004 Sum_probs=42.6
Q ss_pred CCCCeeeecccCCCCchHHHHHHHHhcCC-eeEEecC----------CcCEEEecCHHHHHHHHHh--cc-cccccCC
Q 040102 39 MALPIIGHLHLLAPIPHQALHKLSIRYGP-LIHLFLG----------SVPCIVACSPETAKEILKT--HE-TSFCDRP 102 (308)
Q Consensus 39 ~~~PllGnl~~l~~~~~~~~~~~~~~yG~-i~~~~~g----------~~~~vvi~d~e~~~evl~~--~~-~~f~~Rp 102 (308)
...-++||++. ......+.++..+||+ |..+.+- +.-+|-..+++.++.++.. ++ ..+.+|+
T Consensus 8 ~~~l~V~nLp~--~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 8 NCRLFIGGIPK--MKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp SEEEEEECCCT--TSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred CCEEEEeCCCC--cCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 33568899863 2335677888889998 8888864 2345677899999999964 22 4555554
No 179
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.05 E-value=30 Score=23.95 Aligned_cols=62 Identities=13% Similarity=0.111 Sum_probs=42.5
Q ss_pred CCCeeeecccCCCCchHHHHHHHHhcCCee--------EEecCC---------cCEEEecCHHHHHHHHHh-cccccccC
Q 040102 40 ALPIIGHLHLLAPIPHQALHKLSIRYGPLI--------HLFLGS---------VPCIVACSPETAKEILKT-HETSFCDR 101 (308)
Q Consensus 40 ~~PllGnl~~l~~~~~~~~~~~~~~yG~i~--------~~~~g~---------~~~vvi~d~e~~~evl~~-~~~~f~~R 101 (308)
..-++||++. ......+.++..+||+|. .+.+-. .=+|...+++.|+.++.. ++..+.+|
T Consensus 16 ~~l~V~nLp~--~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (113)
T 2cpe_A 16 SAIYVQGLND--SVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGS 93 (113)
T ss_dssp CEEEEECCCT--TCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTE
T ss_pred CEEEEcCCCC--CCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCC
Confidence 3458899863 233567888889999986 355432 236777899999999974 56666666
Q ss_pred Cc
Q 040102 102 PI 103 (308)
Q Consensus 102 p~ 103 (308)
+.
T Consensus 94 ~l 95 (113)
T 2cpe_A 94 KL 95 (113)
T ss_dssp EC
T ss_pred EE
Confidence 53
No 180
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.02 E-value=23 Score=23.03 Aligned_cols=64 Identities=19% Similarity=0.117 Sum_probs=42.4
Q ss_pred CCCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHh-cccccccC
Q 040102 36 PSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT-HETSFCDR 101 (308)
Q Consensus 36 PgP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~-~~~~f~~R 101 (308)
+.|...-++||++. ......+.++..+||+|..+.+-. --+|...+++.++.++.. ++..+.+|
T Consensus 2 ~~~~~~l~v~nlp~--~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (85)
T 1x4e_A 2 SSGSSGLYIRGLQP--GTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQ 75 (85)
T ss_dssp CCCCCEEEEESCCT--TCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred CCCCcEEEEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeE
Confidence 34455668899853 223556777788999998887532 235777899999988863 33444444
No 181
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=51.61 E-value=29 Score=26.57 Aligned_cols=62 Identities=13% Similarity=0.175 Sum_probs=44.9
Q ss_pred CCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHhcccccccCC
Q 040102 39 MALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 39 ~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
...=++||++. ......+.++..+||+|..+.+-. .=+|...+++.|+.++..++..+.+|+
T Consensus 13 ~~~l~V~nLp~--~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~ 83 (196)
T 1l3k_A 13 LRKLFIGGLSF--ETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRV 83 (196)
T ss_dssp GGEEEEESCCT--TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEE
T ss_pred CCEEEEeCCCC--CCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEE
Confidence 34568899864 233567888889999988777532 336788899999999977666665554
No 182
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=51.11 E-value=31 Score=23.91 Aligned_cols=60 Identities=17% Similarity=0.321 Sum_probs=42.0
Q ss_pred CCeeeecccCCCCchHHHHHHHHhcCCeeEEecC-CcCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 41 LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG-SVPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 41 ~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g-~~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
.-++||+.. ......+.++..+||+|..+.+- +.-+|...+.+.++.++.. ++..+.+|+
T Consensus 33 ~l~V~nLp~--~~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (108)
T 2jvo_A 33 RLFVRPFPL--DVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFANQP 94 (108)
T ss_dssp EEEECSSCT--TCCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEECCCC--CCCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 347888753 22356688888999998887764 4556667899999999864 555555554
No 183
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=51.00 E-value=39 Score=23.25 Aligned_cols=62 Identities=10% Similarity=0.173 Sum_probs=42.1
Q ss_pred CCCeeeecccCCCCchHHHHHHHHhcCCeeEEecC-CcCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 40 ALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG-SVPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 40 ~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g-~~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
..-++||+..-. .....+.++..+||+|..+.+. +.-+|...+++.++.++.. ++..+.+++
T Consensus 28 ~~l~V~nl~~~~-~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 91 (110)
T 1wf1_A 28 SRVFIGNLNTAL-VKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLAGQT 91 (110)
T ss_dssp SEEEECSCCCSS-CCHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHHTTCEETTEE
T ss_pred cEEEEeCCCccc-CCHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 345889885420 3356788888999999888873 2334556799999988854 555565554
No 184
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.81 E-value=37 Score=23.39 Aligned_cols=64 Identities=14% Similarity=0.267 Sum_probs=44.2
Q ss_pred CCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecC---CcCEEEecCHHHHHHHHHh---cccccccCCc
Q 040102 38 PMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---SVPCIVACSPETAKEILKT---HETSFCDRPI 103 (308)
Q Consensus 38 P~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvi~d~e~~~evl~~---~~~~f~~Rp~ 103 (308)
|...-++||+.. ......+.++...||.|..+.+- +.=+|-..+.+.|+.++.. ++..+.+|+.
T Consensus 14 p~~~l~V~nLp~--~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 14 PSRVLHIRKLPG--EVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CCSEEEEESCCT--TCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCEEEEeCCCC--CCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 334678999864 33356788888899999888764 3456777899999988853 3344556653
No 185
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=49.39 E-value=44 Score=22.47 Aligned_cols=60 Identities=17% Similarity=0.100 Sum_probs=40.4
Q ss_pred CCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---cCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 41 LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---VPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 41 ~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
.=++||+.. ......+.++..+||+|..+.+.. .=+|...+.+.+..++.. ++..+.+|+
T Consensus 29 ~l~V~nlp~--~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 92 (101)
T 2la4_A 29 TAYIGNIPH--FATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRN 92 (101)
T ss_dssp EEEEESCCT--TCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEcCCCc--ccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 357888853 233567888888999998888752 345566789988888854 444444443
No 186
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.11 E-value=18 Score=24.65 Aligned_cols=63 Identities=14% Similarity=0.118 Sum_probs=43.0
Q ss_pred CCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCCc---------CEEEecCHHHHHHHHHh-cccccccCC
Q 040102 38 PMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSV---------PCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 38 P~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~---------~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
|...-++||+.. ......+.++..+||+|..+.+-.. =+|...+++.++.++.. ++..+.+++
T Consensus 14 ~~~~l~V~nlp~--~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (103)
T 2cq0_A 14 DNATIRVTNLSE--DTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLI 86 (103)
T ss_dssp SSEEEEEESCCT--TCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred CCCEEEEeCCCC--CCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 344568899864 2234567777789999988887432 36777899999999973 444454544
No 187
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=49.07 E-value=30 Score=22.69 Aligned_cols=57 Identities=16% Similarity=0.267 Sum_probs=37.6
Q ss_pred eeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 43 llGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
++||+.. ......+.++..+||+|..+.+-. --+|...+++ +..++.. ++..+.+|+
T Consensus 5 ~V~nLp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~ 71 (90)
T 2ki2_A 5 YVGNLVY--SATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRT 71 (90)
T ss_dssp EEEEECT--TSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSS
T ss_pred EECCCCC--CCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeE
Confidence 5778753 223456777778899998888642 2356678999 8888764 445555554
No 188
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=48.67 E-value=29 Score=26.58 Aligned_cols=60 Identities=8% Similarity=0.099 Sum_probs=43.1
Q ss_pred CCeeeecccCCCCchHHHHHHHHhcCCeeEEecCCc---------CEEEecCHHHHHHHHHhcccccccCC
Q 040102 41 LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSV---------PCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 41 ~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~---------~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
.-++||++. ......+.++...||+|..+.+-.. =+|-..+++.|..++..++..+.+|+
T Consensus 106 ~l~V~nLp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~ 174 (196)
T 1l3k_A 106 KIFVGGIKE--DTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHN 174 (196)
T ss_dssp EEEEECCTT--TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEE
T ss_pred eEEEeCCCC--CCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEE
Confidence 347788753 2335677888889999988776432 36777899999999977666666665
No 189
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=48.59 E-value=42 Score=25.69 Aligned_cols=56 Identities=14% Similarity=0.293 Sum_probs=39.5
Q ss_pred CeeeecccCCCCchHHHHHHHHhcCCeeEEecC-----CcCEEEecCHHHHHHHHHh-cccccc
Q 040102 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG-----SVPCIVACSPETAKEILKT-HETSFC 99 (308)
Q Consensus 42 PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g-----~~~~vvi~d~e~~~evl~~-~~~~f~ 99 (308)
-++||+.. .-....+.+...+||.|-.+++. +.=+|-..|.+.++.++.. ++..+.
T Consensus 49 l~VgNL~~--~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~ 110 (164)
T 1sjr_A 49 IIVENLFY--PVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY 110 (164)
T ss_dssp EEECSCCS--CCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSS
T ss_pred EEEeCcCC--CCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEec
Confidence 35899853 23356788888999999888874 2356778899999888863 444443
No 190
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=48.32 E-value=54 Score=25.43 Aligned_cols=59 Identities=14% Similarity=0.267 Sum_probs=41.1
Q ss_pred CeeeecccCCCCchHHHHHHHHhcCCeeEEecC---------CcCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---------SVPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 42 PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
=++||+.. ......+.++..+||+|..+.+- +.=+|...+++.++.++.. ++..+.+|+
T Consensus 31 l~V~nLp~--~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 99 (216)
T 2qfj_A 31 VYVGSIYY--ELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRN 99 (216)
T ss_dssp EEEECCCT--TCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CC
T ss_pred EEEECCCC--CCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCee
Confidence 47888753 22356788888999999988873 2346777899999999973 444444443
No 191
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.31 E-value=62 Score=22.07 Aligned_cols=61 Identities=13% Similarity=0.213 Sum_probs=42.5
Q ss_pred CCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC------cCEEEecCHHHHHHHHH-hcccccccCC
Q 040102 40 ALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS------VPCIVACSPETAKEILK-THETSFCDRP 102 (308)
Q Consensus 40 ~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~------~~~vvi~d~e~~~evl~-~~~~~f~~Rp 102 (308)
..-++||++. ......+.++..+||+|..+.+-. .-+|...+.+.++.++. -++..+.+|+
T Consensus 23 ~~l~V~nLp~--~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 90 (109)
T 1x4a_A 23 CRIYVGNLPP--DIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYR 90 (109)
T ss_dssp SEEEEESCCT--TCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CEEEEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 3567898864 233567888889999997777632 23677889999999984 3445555554
No 192
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.31 E-value=18 Score=25.44 Aligned_cols=65 Identities=9% Similarity=0.028 Sum_probs=43.6
Q ss_pred CCCCCCCeeeecccCCCCchHHHHHHHHhcCCe-eEEecC--------CcCEEEecCHHHHHHHHHhcccccccCC
Q 040102 36 PSPMALPIIGHLHLLAPIPHQALHKLSIRYGPL-IHLFLG--------SVPCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 36 PgP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i-~~~~~g--------~~~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
|.+...-++||++. ......+.++...||.+ ..+.+- +.=+|...+++.++.++..++..+.+|+
T Consensus 12 ~~~~~~l~V~nLp~--~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 85 (114)
T 2cpy_A 12 NSAKVCAHITNIPF--SITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGRE 85 (114)
T ss_dssp CSCCCEEEEESCCT--TSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEE
T ss_pred CCCccEEEEeCcCC--cCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeE
Confidence 34445568899864 22355688888889988 344431 3456778899999999977655555554
No 193
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=48.12 E-value=48 Score=24.51 Aligned_cols=64 Identities=17% Similarity=0.237 Sum_probs=45.7
Q ss_pred CCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHh-cccccccCCc
Q 040102 38 PMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT-HETSFCDRPI 103 (308)
Q Consensus 38 P~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~-~~~~f~~Rp~ 103 (308)
|...-+|||++. ......+.++..+||+|..+.+-. .-+|...+++.|+.++.. ++..+.+++.
T Consensus 38 ~~~~l~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 111 (156)
T 1h2v_Z 38 KSCTLYVGNLSF--YTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRII 111 (156)
T ss_dssp TCCEEEEESCCT--TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEEC
T ss_pred CCCEEEEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 344568899863 233567888889999998888721 236778899999999974 5566666653
No 194
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.54 E-value=60 Score=21.62 Aligned_cols=60 Identities=10% Similarity=0.081 Sum_probs=39.1
Q ss_pred CCeeeecccCCCCchHHHHHHHHhcCCe-eEEecC---CcCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 41 LPIIGHLHLLAPIPHQALHKLSIRYGPL-IHLFLG---SVPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 41 ~PllGnl~~l~~~~~~~~~~~~~~yG~i-~~~~~g---~~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
.-++||++. ......+.++..+||+| ..+..+ +--+|...+++.++.++.. ++..+.+|+
T Consensus 21 ~l~V~nL~~--~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (97)
T 2e5j_A 21 DVYVGNLPR--DARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDT 85 (97)
T ss_dssp EEEEECCCT--TCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSC
T ss_pred EEEEeCCCC--cCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 457888853 23356788888899987 233222 3445667899999988854 555565554
No 195
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=47.37 E-value=49 Score=23.81 Aligned_cols=60 Identities=13% Similarity=0.188 Sum_probs=42.6
Q ss_pred CCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 41 LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 41 ~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
.-++||+.. ......+.++..+||+|..+.+-. .-+|...+++.|+.++.. ++..+.+|+
T Consensus 44 ~l~V~nLp~--~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 113 (139)
T 1u6f_A 44 NLMVNYIPT--TVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKR 113 (139)
T ss_dssp EEEEESCST--TCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCE
T ss_pred EEEEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 347888853 223567888888999998887632 236777899999999974 555666665
No 196
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=47.30 E-value=55 Score=26.00 Aligned_cols=62 Identities=15% Similarity=0.189 Sum_probs=45.0
Q ss_pred CCeeeecccCCCCchHHHHHHHHhcCCeeEEecC----CcCEEEecCHHHHHHHHH-hcccccccCCc
Q 040102 41 LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG----SVPCIVACSPETAKEILK-THETSFCDRPI 103 (308)
Q Consensus 41 ~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g----~~~~vvi~d~e~~~evl~-~~~~~f~~Rp~ 103 (308)
.=++||+..- ......+.++..+||+|..+.+- +.=+|...+++.|+.++. -++..+.+|+.
T Consensus 36 ~l~V~nLp~~-~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 102 (229)
T 2adc_A 36 VLLVSNLNPE-RVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPI 102 (229)
T ss_dssp EEEEESCCTT-TCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBC
T ss_pred EEEEeCCCcc-cCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 4578998641 22346778888899999988875 345778889999999996 45666766653
No 197
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=47.25 E-value=61 Score=21.65 Aligned_cols=62 Identities=15% Similarity=0.132 Sum_probs=43.4
Q ss_pred CCCCeeeecccCCCCchHHHHHHHHhc--CCeeEEecC-CcCEEEecCHHHHHHHHH-hcccccccCC
Q 040102 39 MALPIIGHLHLLAPIPHQALHKLSIRY--GPLIHLFLG-SVPCIVACSPETAKEILK-THETSFCDRP 102 (308)
Q Consensus 39 ~~~PllGnl~~l~~~~~~~~~~~~~~y--G~i~~~~~g-~~~~vvi~d~e~~~evl~-~~~~~f~~Rp 102 (308)
...-++||+.. ......+.++..+| |.|..+.+- +.=+|...+++.++.++. -++..+.+|+
T Consensus 15 ~~~l~V~nLp~--~~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 15 VKILYVRNLML--STSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp CCEEEEESCCT--TCCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred cCEEEEeCCCC--CCCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 34568899864 23356788888899 888888754 355667789999999986 3455555554
No 198
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.89 E-value=36 Score=22.58 Aligned_cols=63 Identities=17% Similarity=0.252 Sum_probs=42.3
Q ss_pred CCCCCeeeecccCCCCchHHHHHHHHhcCCeeEE-ecCC---------cCEEEecCHHHHHHHHH-hcccccccCC
Q 040102 38 PMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHL-FLGS---------VPCIVACSPETAKEILK-THETSFCDRP 102 (308)
Q Consensus 38 P~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~-~~g~---------~~~vvi~d~e~~~evl~-~~~~~f~~Rp 102 (308)
|...-++||++. ......+.++..+||+|..+ ++-. .=+|-..+++.|+.++. -++..+.+|+
T Consensus 4 ~~~~l~V~nLp~--~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 77 (96)
T 1x5t_A 4 GSSGIFIGNLDP--EIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRP 77 (96)
T ss_dssp CCCEEEEECCCT--TCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEE
T ss_pred CCCEEEEeCCCC--CCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 334557888864 23356788888899998766 5432 33577789999999997 3445555554
No 199
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=46.85 E-value=35 Score=24.95 Aligned_cols=64 Identities=13% Similarity=0.264 Sum_probs=41.3
Q ss_pred CCCCCC--CCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC-----cCEEEecCHHHHHHHHHh-ccccccc
Q 040102 35 PPSPMA--LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS-----VPCIVACSPETAKEILKT-HETSFCD 100 (308)
Q Consensus 35 pPgP~~--~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~-----~~~vvi~d~e~~~evl~~-~~~~f~~ 100 (308)
+++|.. +-++||+.. .--...+.+...+||+|-.+++.. +=+|...|++.|+.++.. ++..+.+
T Consensus 22 ~~~ps~VL~I~V~NL~~--~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g 93 (130)
T 3zzy_A 22 MAGQSPVLRIIVENLFY--PVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN 93 (130)
T ss_dssp ---CCSEEEEEEESCCS--CCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEET
T ss_pred cCCCCceEEEEECCCCC--CCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecC
Confidence 344443 456999853 223567888899999998888754 357778888888877742 3344433
No 200
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=46.63 E-value=56 Score=22.09 Aligned_cols=61 Identities=11% Similarity=0.097 Sum_probs=41.7
Q ss_pred CCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC--------cCEEEecCHHHHHHHHHh-ccccccc
Q 040102 38 PMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS--------VPCIVACSPETAKEILKT-HETSFCD 100 (308)
Q Consensus 38 P~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~--------~~~vvi~d~e~~~evl~~-~~~~f~~ 100 (308)
|...-++||++. ......+.++..+||+|..+.+-. .=+|...+++.|+.++.. ++..+.+
T Consensus 14 ~~~~l~v~nLp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 14 RDRKLFVGMLNK--QQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp CCCEEEEESCCT--TCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred CCCEEEEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 344567899853 223566888888999998887643 235667899999999863 3444444
No 201
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.44 E-value=64 Score=21.68 Aligned_cols=62 Identities=13% Similarity=0.083 Sum_probs=43.2
Q ss_pred CCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHhcccccccCC
Q 040102 38 PMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 38 P~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
|...-++||++. ......+.++..+||+|..+.+-. .-+|...+++.++.++.+ ...+.+|+
T Consensus 14 ~~~~l~v~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~ 84 (103)
T 2cqg_A 14 KTSDLIVLGLPW--KTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRW 84 (103)
T ss_dssp CCCCEEEESCCS--SCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEE
T ss_pred CCCEEEEEcCCC--cCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeE
Confidence 344568899753 233566888889999998887632 235677899999999974 45555554
No 202
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=46.05 E-value=40 Score=23.53 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=39.7
Q ss_pred CeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHh-cccccccC
Q 040102 42 PIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT-HETSFCDR 101 (308)
Q Consensus 42 PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~-~~~~f~~R 101 (308)
-++||+.. ......+.++..+||+|..+.+-. .=+|...+++.++.++.. ++..+.+|
T Consensus 43 l~V~nlp~--~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 110 (118)
T 2khc_A 43 LFIYHLPQ--EFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTK 110 (118)
T ss_dssp EEEECSCT--TCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTE
T ss_pred EEEeCCCC--CCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 46888753 223567888888999998888742 235677899999999864 34444443
No 203
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=45.63 E-value=28 Score=20.25 Aligned_cols=6 Identities=33% Similarity=0.440 Sum_probs=2.4
Q ss_pred HHHhhc
Q 040102 23 SIFRRS 28 (308)
Q Consensus 23 ~~~~~~ 28 (308)
++++++
T Consensus 32 ~~~RRR 37 (44)
T 2l2t_A 32 VYVRRK 37 (44)
T ss_dssp HHHHTT
T ss_pred HHhhhh
Confidence 334343
No 204
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.38 E-value=35 Score=23.64 Aligned_cols=65 Identities=15% Similarity=0.160 Sum_probs=42.2
Q ss_pred CCCCCCeeeecccCCCCchHHHHHHHHhcCCe----eEEecC-----CcCEEEecCHHHHHHHHHh-cccccccCCc
Q 040102 37 SPMALPIIGHLHLLAPIPHQALHKLSIRYGPL----IHLFLG-----SVPCIVACSPETAKEILKT-HETSFCDRPI 103 (308)
Q Consensus 37 gP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i----~~~~~g-----~~~~vvi~d~e~~~evl~~-~~~~f~~Rp~ 103 (308)
.|...-++||+.. ......+.++..+||+| ..+.+. +.=+|...+.+.++.++.. ++..+.+++.
T Consensus 23 ~~~~~l~V~nLp~--~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 23 EPNKVLYLKNLSP--RVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp SCCSEEEEECCCT--TCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred CCCCEEEEeCCCC--CCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 3445678999863 22355677777888876 444432 2335777899999999975 5556666653
No 205
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=45.22 E-value=72 Score=22.76 Aligned_cols=51 Identities=16% Similarity=0.232 Sum_probs=37.1
Q ss_pred CCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHh
Q 040102 41 LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT 93 (308)
Q Consensus 41 ~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~ 93 (308)
.-++||++. ......+.++..+||+|..+.+-. .=+|...+++.++.++..
T Consensus 65 ~l~v~nlp~--~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 124 (140)
T 2ku7_A 65 VLYVGGLAE--EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 124 (140)
T ss_dssp EEEEECCCT--TCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHH
T ss_pred EEEEEeCCC--CCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 347888753 223467888889999999988732 236777899999999853
No 206
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=45.03 E-value=32 Score=28.50 Aligned_cols=64 Identities=14% Similarity=0.172 Sum_probs=46.4
Q ss_pred CCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecC-------CcCEEEecCHHHHHHHHHhcccccccCCc
Q 040102 38 PMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG-------SVPCIVACSPETAKEILKTHETSFCDRPI 103 (308)
Q Consensus 38 P~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g-------~~~~vvi~d~e~~~evl~~~~~~f~~Rp~ 103 (308)
+...-++||++. ......+.++...||+|..+.+- +.=+|...+++.|+.++..++..+.+|+.
T Consensus 40 ~~~~l~V~nLp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i 110 (292)
T 2ghp_A 40 ELTTVLVKNLPK--SYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEI 110 (292)
T ss_dssp --CEEEEEEECT--TCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEEC
T ss_pred CCCEEEEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcEE
Confidence 345678999864 23356788888999999887753 34467788999999999766677777653
No 207
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=44.24 E-value=15 Score=25.08 Aligned_cols=59 Identities=10% Similarity=0.261 Sum_probs=41.8
Q ss_pred CCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC--------cCEEEecCHHHHHHHHHhcccccccCC
Q 040102 41 LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS--------VPCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 41 ~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~--------~~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
.=++||++. ......+.++...||+|..+.+-. .=+|...+++.++.++. ++..+.+++
T Consensus 11 ~l~V~nLp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~ 77 (102)
T 2xs2_A 11 TVFVGGIDV--RMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKK 77 (102)
T ss_dssp EEEEECCCT--TCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEE
T ss_pred EEEEeCCCC--CCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEE
Confidence 457888863 223566888889999998887632 33566779999999987 555666654
No 208
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=42.43 E-value=43 Score=24.56 Aligned_cols=58 Identities=14% Similarity=0.163 Sum_probs=40.7
Q ss_pred eeeecccCCCCchHHHHHHHHhcCCeeEEecC--------CcCEEEecCHHHHHHHH-HhcccccccCC
Q 040102 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG--------SVPCIVACSPETAKEIL-KTHETSFCDRP 102 (308)
Q Consensus 43 llGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g--------~~~~vvi~d~e~~~evl-~~~~~~f~~Rp 102 (308)
++||++. ......+.++.++||+|..+++- +.=.|...+++.++.++ .-++..+.+++
T Consensus 4 ~V~nlp~--~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 70 (166)
T 3md3_A 4 YVGNLDK--AITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNI 70 (166)
T ss_dssp EEEEEET--TCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EECCCCC--cCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCe
Confidence 5778753 23356788888999999888873 23467777999999999 44555555554
No 209
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=42.28 E-value=79 Score=21.50 Aligned_cols=54 Identities=17% Similarity=0.135 Sum_probs=39.4
Q ss_pred CCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHh
Q 040102 38 PMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT 93 (308)
Q Consensus 38 P~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~ 93 (308)
|...-++||++. ......+.++..+||+|..+.+-. .=+|-..+.+.++.++..
T Consensus 14 ~~~~l~V~nLp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 76 (111)
T 1x4h_A 14 EGKTVFIRNLSF--DSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA 76 (111)
T ss_dssp CCCCEEEESCCT--TCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEECCCC--CCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHH
Confidence 344678999864 233566788888999999888752 235667899999999864
No 210
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.06 E-value=70 Score=21.93 Aligned_cols=48 Identities=23% Similarity=0.459 Sum_probs=36.3
Q ss_pred hHHHHHHHHhcCCeeEEecCC----cCEEEecCHHHHHHHHHhcccccccCCc
Q 040102 55 HQALHKLSIRYGPLIHLFLGS----VPCIVACSPETAKEILKTHETSFCDRPI 103 (308)
Q Consensus 55 ~~~~~~~~~~yG~i~~~~~g~----~~~vvi~d~e~~~evl~~~~~~f~~Rp~ 103 (308)
...+.++..+||+|..+++-+ .=+|...+++.+..++.. ...+.+||.
T Consensus 31 e~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l 82 (100)
T 2d9o_A 31 KDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQN-EVGLVDNPL 82 (100)
T ss_dssp HHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHT-CCBCSSSBC
T ss_pred HHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHh-cCCCCCCeE
Confidence 577888889999999988743 336777899999999976 344555653
No 211
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=41.90 E-value=72 Score=24.39 Aligned_cols=60 Identities=15% Similarity=0.198 Sum_probs=43.1
Q ss_pred eeeecccCCCCchHHHHHHHHhcCCeeEEecC----CcCEEEecCHHHHHHHHH-hcccccccCCc
Q 040102 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG----SVPCIVACSPETAKEILK-THETSFCDRPI 103 (308)
Q Consensus 43 llGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g----~~~~vvi~d~e~~~evl~-~~~~~f~~Rp~ 103 (308)
++||++.- ......+.++..+||+|..+.+- +.=+|...+++.++.++. -++..+.+|+.
T Consensus 7 ~v~nlp~~-~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l 71 (198)
T 1qm9_A 7 LVSNLNPE-RVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPI 71 (198)
T ss_dssp EEECCCSS-SCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCC
T ss_pred EEeCCCcc-cCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEE
Confidence 57777530 12346788888899999988875 345788889999999986 45566666654
No 212
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=41.36 E-value=44 Score=23.81 Aligned_cols=65 Identities=5% Similarity=0.055 Sum_probs=43.2
Q ss_pred CCCCCeeeecccC---CCCchHHHHHHHHhcCCeeEEecCC-------------cCEEEecCHHHHHHHHHh-ccccccc
Q 040102 38 PMALPIIGHLHLL---APIPHQALHKLSIRYGPLIHLFLGS-------------VPCIVACSPETAKEILKT-HETSFCD 100 (308)
Q Consensus 38 P~~~PllGnl~~l---~~~~~~~~~~~~~~yG~i~~~~~g~-------------~~~vvi~d~e~~~evl~~-~~~~f~~ 100 (308)
|...-+|.|+... .......+.+...+||+|..+++-. .=+|...+++.|+.+... ++..|.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 5567788898643 2334456666667899999887542 224566699888877753 5566666
Q ss_pred CC
Q 040102 101 RP 102 (308)
Q Consensus 101 Rp 102 (308)
|+
T Consensus 99 R~ 100 (118)
T 3ue2_A 99 RK 100 (118)
T ss_dssp EE
T ss_pred cE
Confidence 65
No 213
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=41.08 E-value=70 Score=23.47 Aligned_cols=60 Identities=13% Similarity=0.102 Sum_probs=42.2
Q ss_pred CCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHH-hcccccccCC
Q 040102 41 LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILK-THETSFCDRP 102 (308)
Q Consensus 41 ~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~-~~~~~f~~Rp 102 (308)
.=++||++. ......+.++...||+|..+++-. .-+|-..+++.++.++. -++..+.+|+
T Consensus 5 ~l~v~nlp~--~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 74 (168)
T 1b7f_A 5 NLIVNYLPQ--DMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKR 74 (168)
T ss_dssp EEEEECCCT--TCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEeCCCC--CCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcE
Confidence 346788753 233567888889999998888653 34666789999999985 3455555554
No 214
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.84 E-value=76 Score=20.91 Aligned_cols=62 Identities=15% Similarity=0.181 Sum_probs=42.3
Q ss_pred CCCCeeeecccCCCCchHHHHHHHHhcCCeeEEe-cCC-----cCEEEecCHHHHHHHHH-hcccccccCC
Q 040102 39 MALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLF-LGS-----VPCIVACSPETAKEILK-THETSFCDRP 102 (308)
Q Consensus 39 ~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~-~g~-----~~~vvi~d~e~~~evl~-~~~~~f~~Rp 102 (308)
...-++||++. ......+.++..+||+|..+. +-. .-+|...+++.++.++. -++..+.+|+
T Consensus 15 ~~~l~V~nlp~--~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 83 (96)
T 2e44_A 15 IRKLQIRNIPP--HLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFT 83 (96)
T ss_dssp CCCEEEEEECS--SSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCEEEEEcCCC--CCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 34568999864 233566888888999998873 322 24677789999999886 3445555554
No 215
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=40.75 E-value=59 Score=23.89 Aligned_cols=57 Identities=19% Similarity=0.292 Sum_probs=40.4
Q ss_pred eeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHhcccccccCC
Q 040102 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 43 llGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
++||++. ......+.++...||+|..+++-. -=.|...+++.++.++.+ ...+.+|+
T Consensus 7 ~v~nLp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~ 72 (167)
T 2cjk_A 7 FIGGLNW--DTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKV 72 (167)
T ss_dssp EECSCCT--TCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEE
T ss_pred EEeCCCC--CCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeE
Confidence 6777753 333567888889999999988743 235778899999999974 34444443
No 216
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=40.16 E-value=63 Score=21.88 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=36.5
Q ss_pred CCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---cCEEEecCHHHHHHHHH
Q 040102 39 MALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---VPCIVACSPETAKEILK 92 (308)
Q Consensus 39 ~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---~~~vvi~d~e~~~evl~ 92 (308)
.+|-++||+.. +.-...+.++..+||+|..+++.. -=.|-..+++.|+.+..
T Consensus 7 ~~wL~VgNL~~--~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~ 61 (89)
T 2wbr_A 7 SSWLLLKNLTA--QIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQM 61 (89)
T ss_dssp CCEEEEECCCT--TCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred cceEEEeCCCc--cCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHH
Confidence 45788999864 223568899999999999988653 23455567766666653
No 217
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.52 E-value=90 Score=21.36 Aligned_cols=62 Identities=11% Similarity=0.138 Sum_probs=43.7
Q ss_pred CCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC--------cCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 39 MALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS--------VPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 39 ~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~--------~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
...-+|||+.. ......+.++..+||+|..+.+-. .-+|...+.+.++.++.. ++..+.+|+
T Consensus 15 ~~~l~V~nlp~--~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (114)
T 2do0_A 15 GSTVFVANLDY--KVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRP 85 (114)
T ss_dssp CSCEEEESCCT--TCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCE
Confidence 34668899864 233567888889999988777543 345777899999999863 555565554
No 218
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.49 E-value=25 Score=25.32 Aligned_cols=62 Identities=11% Similarity=0.159 Sum_probs=41.2
Q ss_pred CCCCCeeeecccCCCCchHHHHHHHHhcCCe----eEEec----CC----cCEEEecCHHHHHHHHHhcccccccC
Q 040102 38 PMALPIIGHLHLLAPIPHQALHKLSIRYGPL----IHLFL----GS----VPCIVACSPETAKEILKTHETSFCDR 101 (308)
Q Consensus 38 P~~~PllGnl~~l~~~~~~~~~~~~~~yG~i----~~~~~----g~----~~~vvi~d~e~~~evl~~~~~~f~~R 101 (308)
+...-++|||+. ......+.++.+.||+| -.+++ .+ .=+|...+++.++.++.+++..+.+|
T Consensus 22 ~~~~v~V~nLp~--~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR 95 (123)
T 2dha_A 22 NQVIVRMRGLPF--TATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKR 95 (123)
T ss_dssp SCCEEEECSCCT--TCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSC
T ss_pred CCCEEEEeCCCC--CCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCe
Confidence 344567888853 33456788888899975 23332 12 34788889999999998765555444
No 219
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=39.42 E-value=49 Score=26.59 Aligned_cols=58 Identities=12% Similarity=0.158 Sum_probs=40.0
Q ss_pred CeeeecccCCCCchHHHHHHHHhcC--CeeEEecCCc---------CEEEecCHHHHHHHHHh-cccccccC
Q 040102 42 PIIGHLHLLAPIPHQALHKLSIRYG--PLIHLFLGSV---------PCIVACSPETAKEILKT-HETSFCDR 101 (308)
Q Consensus 42 PllGnl~~l~~~~~~~~~~~~~~yG--~i~~~~~g~~---------~~vvi~d~e~~~evl~~-~~~~f~~R 101 (308)
-+||||.. ..-...+.++..+|| .|..+.+-.. =+|...+.+.++.++.. ++..+.+|
T Consensus 71 lfVgnL~~--~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr 140 (229)
T 3q2s_C 71 LYIGNLTW--WTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ 140 (229)
T ss_dssp EEEESCCT--TCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTB
T ss_pred EEEeCCCC--CCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCE
Confidence 37888753 223567888889999 8988886432 36788899999999863 33444444
No 220
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=39.29 E-value=54 Score=29.38 Aligned_cols=63 Identities=11% Similarity=0.141 Sum_probs=44.6
Q ss_pred CCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecC---------CcCEEEecCHHHHHHHHHh-cccccccCCc
Q 040102 39 MALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---------SVPCIVACSPETAKEILKT-HETSFCDRPI 103 (308)
Q Consensus 39 ~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvi~d~e~~~evl~~-~~~~f~~Rp~ 103 (308)
...-+||||..- .....+.++...||+|..+.+- +.=+|...+++.|..++.. ++..+.+++.
T Consensus 102 ~~~lfV~nL~~~--~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i 174 (437)
T 3pgw_S 102 FKTLFVARVNYD--TTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRV 174 (437)
T ss_pred CCEEEEeCCCCC--CCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEE
Confidence 345689998532 2345677888889999888873 2346777899999999865 6666766654
No 221
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=39.28 E-value=66 Score=23.18 Aligned_cols=61 Identities=13% Similarity=0.128 Sum_probs=42.8
Q ss_pred CCCCeeeecccCCCCchHHHHHHHHhcCCee--EEecC--------CcCEEEecCHHHHHHHHHhcccccccCC
Q 040102 39 MALPIIGHLHLLAPIPHQALHKLSIRYGPLI--HLFLG--------SVPCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 39 ~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~--~~~~g--------~~~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
...-++||++. ......+.++...| .|. .+.+- +-=+|...+++.++.++...+..+.+|+
T Consensus 42 ~~~lfVgnLp~--~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~ 112 (126)
T 2hgm_A 42 DGFVRLRGLPF--GCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 112 (126)
T ss_dssp CCEEEEECCCT--TCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBC
T ss_pred CCEEEEeCCCC--CCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEE
Confidence 34568899864 23356778888888 466 66653 2347888899999999987666666665
No 222
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=39.02 E-value=50 Score=23.35 Aligned_cols=66 Identities=18% Similarity=0.145 Sum_probs=45.4
Q ss_pred CCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---cCEEEecCHHHHHHHHHh---cccccccCCc
Q 040102 37 SPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---VPCIVACSPETAKEILKT---HETSFCDRPI 103 (308)
Q Consensus 37 gP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---~~~vvi~d~e~~~evl~~---~~~~f~~Rp~ 103 (308)
.|...-++||+..- ......+.++...||+|..+++.. .=+|-..+.+.|+.++.. +...+.+|+.
T Consensus 23 ~p~~~l~V~NLp~~-~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 23 ELGRVIHLSNLPHS-GYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp CCCCEEEEESCCCS-SCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred CCCCEEEEeCCCCc-cCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 34456788998642 023456888888999999998763 346777799999888863 3344667764
No 223
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=38.84 E-value=8.4 Score=21.23 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=9.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 040102 6 GYIVLFLVWLVSTILVRSIFR 26 (308)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~ 26 (308)
+-+++++++++.++..+|+.+
T Consensus 13 gVvglll~vii~l~~~~~iRR 33 (35)
T 1iij_A 13 TVVGVLLFLILVVVVGILIKR 33 (35)
T ss_dssp HHHHHHHHHHHTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHhheEEee
Confidence 344444444443333345554
No 224
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=38.83 E-value=75 Score=22.28 Aligned_cols=60 Identities=13% Similarity=0.202 Sum_probs=41.7
Q ss_pred CCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC--------cCEEEecCHHHHHHHHH-hcccccccCC
Q 040102 41 LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS--------VPCIVACSPETAKEILK-THETSFCDRP 102 (308)
Q Consensus 41 ~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~--------~~~vvi~d~e~~~evl~-~~~~~f~~Rp 102 (308)
.=++||+.. ......+.++..+||+|..+.+-. .=+|-..+.+.++.++. -++..+.+|+
T Consensus 37 ~l~V~nlp~--~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 105 (124)
T 2kt5_A 37 KLLVSNLDF--GVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 105 (124)
T ss_dssp EEEEESCCS--SCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred EEEEeCCCC--CCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 457888753 223556788888999988887632 34567789999999986 3555666654
No 225
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=38.59 E-value=92 Score=23.77 Aligned_cols=58 Identities=14% Similarity=0.245 Sum_probs=40.2
Q ss_pred eeeecccCCCCchHHHHHHHHhcCCeeEEecCC--------cCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS--------VPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 43 llGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~--------~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
+|||+.. ......+.++..+||+|..+.+-. .=+|...+++.|+.++.. ++..+.+++
T Consensus 92 ~V~nLp~--~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~ 158 (177)
T 2f3j_A 92 LVSNLDF--GVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 158 (177)
T ss_dssp EEECCCS--CCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSB
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEE
Confidence 6677643 223556788888899998888732 346777899999999873 445555555
No 226
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.46 E-value=28 Score=23.91 Aligned_cols=64 Identities=8% Similarity=0.073 Sum_probs=44.0
Q ss_pred CCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC--------cCEEEecCHHHHHHHHHhcccccccCCc
Q 040102 37 SPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS--------VPCIVACSPETAKEILKTHETSFCDRPI 103 (308)
Q Consensus 37 gP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~--------~~~vvi~d~e~~~evl~~~~~~f~~Rp~ 103 (308)
.+...-++||++. ......+.++...||.+ .+++-. --+|...+++.++.++..++..+.+|+.
T Consensus 13 ~~~~~l~V~nLp~--~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i 84 (102)
T 1wez_A 13 TTGHCVHMRGLPY--RATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYV 84 (102)
T ss_dssp SSSCEEEEESCCT--TCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCC
T ss_pred CCCCEEEEeCCCC--CCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEE
Confidence 3344567898864 22356677877889954 665531 2467778999999999777777777764
No 227
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=37.41 E-value=81 Score=24.34 Aligned_cols=60 Identities=7% Similarity=0.100 Sum_probs=42.2
Q ss_pred CCeeeecccCCCCchHHHHHHHHhcCCeeEEecCCc---------CEEEecCHHHHHHHHHh-cccccccCC
Q 040102 41 LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSV---------PCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 41 ~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~---------~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
.-++||+.. ......+.++..+||+|..+.+-.. =+|-..+.+.+..++.. ++..+.+|+
T Consensus 127 ~l~v~nlp~--~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 196 (216)
T 2qfj_A 127 RIYVASVHQ--DLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY 196 (216)
T ss_dssp EEEEECCCT--TCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSB
T ss_pred EEEEeCCCC--cCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcE
Confidence 457777753 2235678888889999988886432 25777899999999873 555666665
No 228
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=36.47 E-value=47 Score=22.04 Aligned_cols=58 Identities=7% Similarity=0.039 Sum_probs=38.5
Q ss_pred eeeecccCCCCchHHHHHHHHhcC-CeeEEecCC---------cCEEEecCHHHHHHHHHhc--ccccccCC
Q 040102 43 IIGHLHLLAPIPHQALHKLSIRYG-PLIHLFLGS---------VPCIVACSPETAKEILKTH--ETSFCDRP 102 (308)
Q Consensus 43 llGnl~~l~~~~~~~~~~~~~~yG-~i~~~~~g~---------~~~vvi~d~e~~~evl~~~--~~~f~~Rp 102 (308)
++||++. ......+.++..+|| +|..+++-. -=+|-..+++.|+.++... +..+.+|+
T Consensus 5 ~v~nLp~--~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~ 74 (91)
T 2lxi_A 5 MLRMLPQ--AATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQK 74 (91)
T ss_dssp EEETCCS--SCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEE
T ss_pred EEeCCCC--CCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEE
Confidence 5677753 233567888888999 687777632 1257778999999998642 23455554
No 229
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.12 E-value=25 Score=25.07 Aligned_cols=63 Identities=10% Similarity=-0.012 Sum_probs=40.4
Q ss_pred CCCCCeeeecccCCCCchHHHHHHHHhcCCee---EEe--c-C---CcCEEEecCHHHHHHHHHhcccccccCC
Q 040102 38 PMALPIIGHLHLLAPIPHQALHKLSIRYGPLI---HLF--L-G---SVPCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 38 P~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~---~~~--~-g---~~~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
+...-++||++. ..-...+.++...||+|. .+. - | +.-+|...+++.++.++..++..+.+|+
T Consensus 24 ~~~~l~V~nLp~--~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~ 95 (124)
T 1wel_A 24 AGFCVYLKGLPF--EAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRF 95 (124)
T ss_dssp CCCEEEEECCCT--TCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSC
T ss_pred CCcEEEEeCCCC--CCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcE
Confidence 334568899864 223556778888899753 222 1 1 1346777899999999976555555554
No 230
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=35.77 E-value=1e+02 Score=21.06 Aligned_cols=64 Identities=9% Similarity=0.065 Sum_probs=44.1
Q ss_pred CCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecC---CcCEEEecCHHHHHHHHHh---cccccccCCc
Q 040102 38 PMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---SVPCIVACSPETAKEILKT---HETSFCDRPI 103 (308)
Q Consensus 38 P~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvi~d~e~~~evl~~---~~~~f~~Rp~ 103 (308)
|...-++||+.. ......+.++..+||.|..+.+- +.=+|-..+.+.|+.++.. +...+.+|+.
T Consensus 14 p~~~l~V~nLp~--~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 14 VSPVVHVRGLCE--SVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp CCSEEEEESCCS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred CCCEEEEeCCCC--CCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 344678899853 23356788888999999988864 2456777799999888853 2233566654
No 231
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=35.77 E-value=67 Score=25.14 Aligned_cols=63 Identities=22% Similarity=0.313 Sum_probs=42.8
Q ss_pred CCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 38 PMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 38 P~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
|...-++||++. ..-...+.++.++||+|..+++-. -=+|...+++.++.++.. ++..+.+|+
T Consensus 14 p~~tlfVgnLp~--~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~ 86 (213)
T 4f02_A 14 PMASLYVGDLHP--DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 86 (213)
T ss_dssp -CCEEEEESCCT--TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCcEEEEeCCCC--CCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcc
Confidence 444568999863 233567888889999998887631 236778899999999864 334444443
No 232
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=35.40 E-value=1.1e+02 Score=21.07 Aligned_cols=54 Identities=11% Similarity=0.008 Sum_probs=40.2
Q ss_pred CCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecC---CcCEEEecCHHHHHHHHHh
Q 040102 38 PMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---SVPCIVACSPETAKEILKT 93 (308)
Q Consensus 38 P~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---~~~~vvi~d~e~~~evl~~ 93 (308)
|...-++||++. ..-...+.++...||+|..+.+. +.=+|-..+.+.|+.++..
T Consensus 20 ps~~l~V~NLp~--~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ 76 (100)
T 3r27_A 20 ASPVVHIRGLID--GVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNY 76 (100)
T ss_dssp CCSEEEEESCCT--TCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCC--CCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHH
Confidence 445678999864 22356788888899999888763 4667777799999988853
No 233
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=35.30 E-value=50 Score=24.28 Aligned_cols=61 Identities=8% Similarity=0.039 Sum_probs=44.3
Q ss_pred CCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC--------cCEEEecCHHHHHHHHHhcccccccCCc
Q 040102 40 ALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS--------VPCIVACSPETAKEILKTHETSFCDRPI 103 (308)
Q Consensus 40 ~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~--------~~~vvi~d~e~~~evl~~~~~~f~~Rp~ 103 (308)
..-++||++. ....+.+.++...|| +..+++-. --+|...+++.++.++..++..+.+|+.
T Consensus 47 ~~lfV~nLp~--~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i 115 (139)
T 2hgn_A 47 HCVHMRGLPY--KATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYI 115 (139)
T ss_dssp CCEECCSCCT--TCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCC
T ss_pred CEEEEeCCCC--CCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEE
Confidence 3457888854 333567888888999 55777642 3578888999999999766777777764
No 234
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=35.14 E-value=28 Score=18.32 Aligned_cols=17 Identities=12% Similarity=0.051 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 040102 10 LFLVWLVSTILVRSIFRR 27 (308)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~ 27 (308)
++.+|++++ +.-|+..+
T Consensus 11 visGcival-F~hWL~~r 27 (30)
T 4b19_A 11 VISGCAIAF-FSYWLSRR 27 (30)
T ss_dssp THHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHhc
Confidence 345666644 55576654
No 235
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=34.41 E-value=77 Score=24.78 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=41.5
Q ss_pred CCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC-------cCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 41 LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS-------VPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 41 ~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~-------~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
.-++||+.. ..-...+.+...+||+|..+.+-. .=+|-..+++.|..++.+ ++..+.+|+
T Consensus 105 ~l~v~nl~~--~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~ 172 (213)
T 4f02_A 105 NIFIKNLDK--SIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRK 172 (213)
T ss_dssp EEEEESCCT--TCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred cceECCccc--ccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEE
Confidence 357888753 223567888889999998887632 226777899999999864 445555543
No 236
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.21 E-value=78 Score=21.54 Aligned_cols=47 Identities=13% Similarity=0.180 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCeeEEe-cCCcCEEEecCHHHHHHHHHhcccccccCC
Q 040102 56 QALHKLSIRYGPLIHLF-LGSVPCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 56 ~~~~~~~~~yG~i~~~~-~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
..+.+....||.+..++ ...+-+|-..|.+.+..++.-++..+.+|.
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred HHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHhcCCeEeCCeE
Confidence 34555556799999988 445677888899999999887777766664
No 237
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=34.12 E-value=65 Score=22.36 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=31.3
Q ss_pred hHHHHHHHHhcCCeeEEecCCc-CEEEecCHHHHHHHHH
Q 040102 55 HQALHKLSIRYGPLIHLFLGSV-PCIVACSPETAKEILK 92 (308)
Q Consensus 55 ~~~~~~~~~~yG~i~~~~~g~~-~~vvi~d~e~~~evl~ 92 (308)
..-+.++...||.+.-=|+... -.+++++++.|++++.
T Consensus 29 t~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 29 TSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp HHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHH
T ss_pred hHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHH
Confidence 4567788888999888888864 5577889999999997
No 238
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=33.95 E-value=75 Score=21.67 Aligned_cols=63 Identities=11% Similarity=-0.053 Sum_probs=42.3
Q ss_pred CCCCCeeeecccCCCCchHHHHHHHHhcCC---eeEEecCC--------cCEEEecCHHHHHHHHHhcccccccCC
Q 040102 38 PMALPIIGHLHLLAPIPHQALHKLSIRYGP---LIHLFLGS--------VPCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 38 P~~~PllGnl~~l~~~~~~~~~~~~~~yG~---i~~~~~g~--------~~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
+...-++||+..- .-...+.++...||. |..+.+-. .-+|...+++.++.++..++..+.+|+
T Consensus 10 ~~~~l~V~nLp~~--~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 83 (107)
T 2lmi_A 10 DVFLIRAQGLPWS--CTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRY 83 (107)
T ss_dssp SCCEEEEECCCSS--CCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSC
T ss_pred CccEEEEeCCCCC--CCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeE
Confidence 3345688998643 234567777778887 66666532 346778899999999986555555554
No 239
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=33.94 E-value=89 Score=23.00 Aligned_cols=62 Identities=15% Similarity=0.159 Sum_probs=42.0
Q ss_pred CCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCCc---------CEEEecCHHHHHHHHHh-cccccccCC
Q 040102 39 MALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSV---------PCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 39 ~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~---------~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
...-++||++. ......+.+...+||+|..+.+-.. =+|-..+++.+..++.. ++..+.+|+
T Consensus 94 ~~~l~v~nlp~--~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 165 (172)
T 2g4b_A 94 AHKLFIGGLPN--YLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK 165 (172)
T ss_dssp TTCEEEECCCT--TCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEEcCCC--cCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeE
Confidence 44567888864 2235677888889999988876332 34666799999988864 455555443
No 240
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.19 E-value=1e+02 Score=20.12 Aligned_cols=65 Identities=17% Similarity=0.053 Sum_probs=40.8
Q ss_pred CCCCCCCeeeecccCCCCchHHHHHHHHhcCC-eeEEecCC--cCEEEecCHHHHHHHHHh-cc-cccccCC
Q 040102 36 PSPMALPIIGHLHLLAPIPHQALHKLSIRYGP-LIHLFLGS--VPCIVACSPETAKEILKT-HE-TSFCDRP 102 (308)
Q Consensus 36 PgP~~~PllGnl~~l~~~~~~~~~~~~~~yG~-i~~~~~g~--~~~vvi~d~e~~~evl~~-~~-~~f~~Rp 102 (308)
+.+...=++||+..- .....+.++..+||+ +-...+-. .-+|-..+++.++.++.. ++ ..+.+|+
T Consensus 5 ~~~~~~l~V~nLp~~--~t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 74 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPA--VTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVELHGKI 74 (93)
T ss_dssp CCCCCCEEEECCCTT--CCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCcEEEEeCCCCC--CCHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHccCCeeECCEE
Confidence 344456688998642 235667888889998 44333333 344556799999988863 44 4555554
No 241
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.82 E-value=63 Score=20.98 Aligned_cols=50 Identities=12% Similarity=0.299 Sum_probs=36.5
Q ss_pred CCCeeeecccCCCCchHHHHHHHHhcCCeeEEecC----CcCEEEecCHHHHHHHH
Q 040102 40 ALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG----SVPCIVACSPETAKEIL 91 (308)
Q Consensus 40 ~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g----~~~~vvi~d~e~~~evl 91 (308)
..-++||++. ......+.+...+||+|..+++- +--+|...+++.++.+.
T Consensus 6 ~~l~V~nLp~--~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~ 59 (88)
T 1wf0_A 6 SGVFVGRCTG--DMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLC 59 (88)
T ss_dssp CEEEEESCCS--SSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTT
T ss_pred cEEEEeCCCC--CCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHh
Confidence 3457888853 23356788888899999998875 34577788999998653
No 242
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=32.63 E-value=1.1e+02 Score=22.32 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=37.4
Q ss_pred CCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCCcC---------EEEecCHHHHHHHHH
Q 040102 39 MALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSVP---------CIVACSPETAKEILK 92 (308)
Q Consensus 39 ~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~~---------~vvi~d~e~~~evl~ 92 (308)
...-++||++. ......+.+...+||+|..+.+-..+ +|-..+++.+..++.
T Consensus 89 ~~~l~v~nl~~--~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 149 (168)
T 1b7f_A 89 DTNLYVTNLPR--TITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 149 (168)
T ss_dssp TCEEEEESCCT--TCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCEEEeCCCC--CCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHH
Confidence 34567888753 23356788888899999887764332 666789999999986
No 243
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=32.62 E-value=28 Score=23.15 Aligned_cols=61 Identities=7% Similarity=0.060 Sum_probs=39.4
Q ss_pred CCCeeeecccCCCCchHHHHHHHHhcCCeeEEecC---------CcCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 40 ALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---------SVPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 40 ~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---------~~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
..-++||++. ......+.++..+||+|..+.+- +.-+|-..+++.++.++.. ++..+.+|+
T Consensus 16 ~~l~V~nlp~--~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 86 (95)
T 2ek1_A 16 TVIKVQNMPF--TVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (95)
T ss_dssp EEEEEECCCT--TCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CEEEEeCCCC--CCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcE
Confidence 3567888853 23356678888899976433221 1245677899999999864 555565554
No 244
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.18 E-value=68 Score=22.34 Aligned_cols=59 Identities=12% Similarity=0.048 Sum_probs=41.6
Q ss_pred CCeeeecccCCCCchHHHHHHHHhcCCeeEEecC--------CcCEEEecCHHHHHHHHHhcccccccCC
Q 040102 41 LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG--------SVPCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 41 ~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g--------~~~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
.-++|||+. ..-...+.++.+.| .|..+++. +-=+|...+++.++.++..++..+.+|+
T Consensus 18 ~v~V~nLp~--~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 84 (109)
T 2dnn_A 18 YVSVHGMPF--SAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRY 84 (109)
T ss_dssp EEEEECCCS--SCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEE
T ss_pred EEEEeCCCC--CCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeE
Confidence 468888864 22355677777778 66666653 2347888899999999977766666664
No 245
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.16 E-value=59 Score=22.49 Aligned_cols=68 Identities=21% Similarity=0.233 Sum_probs=44.8
Q ss_pred CCCCCCCCeeeecccCCC---Cc------hHHHHHHHHhcCCeeEEecC-----CcCEEEecCHHHHHHHHHh-cccccc
Q 040102 35 PPSPMALPIIGHLHLLAP---IP------HQALHKLSIRYGPLIHLFLG-----SVPCIVACSPETAKEILKT-HETSFC 99 (308)
Q Consensus 35 pPgP~~~PllGnl~~l~~---~~------~~~~~~~~~~yG~i~~~~~g-----~~~~vvi~d~e~~~evl~~-~~~~f~ 99 (308)
.|.|...-++.|+..... ++ ...+.+...+||+|..+.+- +.=+|...+++.|+.++.. ++..|.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 456667788889854321 11 24667777899998888763 2345666799999988853 445555
Q ss_pred cCC
Q 040102 100 DRP 102 (308)
Q Consensus 100 ~Rp 102 (308)
+|+
T Consensus 91 gr~ 93 (112)
T 2dit_A 91 GRQ 93 (112)
T ss_dssp TEE
T ss_pred CcE
Confidence 555
No 246
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=31.84 E-value=74 Score=24.15 Aligned_cols=60 Identities=15% Similarity=0.172 Sum_probs=40.5
Q ss_pred CCeeeecccCCCCchHHHHHHHHhcCCeeEEecCCc---------CEEEecCHHHHHHHHHh-cccccccCC
Q 040102 41 LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSV---------PCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 41 ~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~---------~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
.-++||++. ......+.+...+||+|..+.+-.. =+|-..+++.+..++.. ++..+.+|+
T Consensus 116 ~l~v~nl~~--~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 185 (198)
T 2yh0_A 116 KLFIGGLPN--YLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK 185 (198)
T ss_dssp EEEEECCCT--TCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEE
T ss_pred EEEEeCCCC--CCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 446777753 2235667888889999988876432 35667799999988864 555555554
No 247
>1q90_N Cytochrome B6F complex subunit PETN; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.27.1
Probab=31.39 E-value=60 Score=17.10 Aligned_cols=20 Identities=20% Similarity=0.122 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 040102 5 RGYIVLFLVWLVSTILVRSI 24 (308)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~ 24 (308)
.+|..+.+++-+|+-+++|=
T Consensus 8 l~WaalmvvfTfSlslVVWG 27 (31)
T 1q90_N 8 IGWAATCVMFSFSLSLVVWG 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhheeeEEEEEe
Confidence 35888888888877666553
No 248
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=37.03 E-value=10 Score=21.28 Aligned_cols=20 Identities=15% Similarity=0.444 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 040102 9 VLFLVWLVSTILVRSIFRRS 28 (308)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~ 28 (308)
.+.++.++|++...++|.++
T Consensus 16 al~vi~iisLIiLi~~w~qK 35 (39)
T 2l6w_A 16 ALVVLTIISLIILIMLWQKK 35 (39)
Confidence 34444555666667888554
No 249
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=30.79 E-value=38 Score=24.87 Aligned_cols=61 Identities=11% Similarity=0.020 Sum_probs=41.7
Q ss_pred CCCeeeecccCCCCchHHHHHHHHhcCC---eeEEecC----C----cCEEEecCHHHHHHHHHhcccccccCC
Q 040102 40 ALPIIGHLHLLAPIPHQALHKLSIRYGP---LIHLFLG----S----VPCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 40 ~~PllGnl~~l~~~~~~~~~~~~~~yG~---i~~~~~g----~----~~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
..-++||+.. ......+.++...||. |..+++- + --+|...+++.++.++..++..+.+|+
T Consensus 45 ~~lfVgnLp~--~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~ 116 (136)
T 2hgl_A 45 FVVKLRGLPW--SCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRY 116 (136)
T ss_dssp CEEEEESCCT--TCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSE
T ss_pred CEEEEeCCCC--CCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEE
Confidence 3458899864 3335678888888998 4444432 1 347888899999999976666665554
No 250
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=30.77 E-value=91 Score=22.37 Aligned_cols=56 Identities=13% Similarity=0.064 Sum_probs=38.6
Q ss_pred eeeecccCCCCchHHHHHHHHhcCCeeEEecC---C-cCEEEecCHHHHHHHHHh-ccccccc
Q 040102 43 IIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG---S-VPCIVACSPETAKEILKT-HETSFCD 100 (308)
Q Consensus 43 llGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g---~-~~~vvi~d~e~~~evl~~-~~~~f~~ 100 (308)
++||+.. ..-...+.+...+||.|-.+++. + +=+|...|++.|..+... ++..+.+
T Consensus 29 ~V~NL~~--~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g 89 (124)
T 2e5i_A 29 SIQNPLY--PITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYA 89 (124)
T ss_dssp EEESCCS--CCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBT
T ss_pred EEcCcCC--CCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 4788753 22356788889999998777653 2 466778898888877753 4555544
No 251
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.57 E-value=1.4e+02 Score=21.01 Aligned_cols=55 Identities=15% Similarity=0.112 Sum_probs=39.3
Q ss_pred CCCCCCee--eecccCCCCchHHHHHHHHhcCCeeEEecCC---cCEEEecCHHHHHHHHHh
Q 040102 37 SPMALPII--GHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---VPCIVACSPETAKEILKT 93 (308)
Q Consensus 37 gP~~~Pll--Gnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---~~~vvi~d~e~~~evl~~ 93 (308)
.|...-++ ||+.. ......+.+...+||.|..+++.. -=+|-..+++.|++++..
T Consensus 23 ~pt~~L~V~Ng~L~~--~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~ 82 (114)
T 2cq2_A 23 YATQSLVVANGGLGN--GVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVT 82 (114)
T ss_dssp SCCSEEEEETCTGGG--TCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCC--CCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 45556788 66753 233567888889999999988753 234666799999988864
No 252
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=29.83 E-value=1.6e+02 Score=21.28 Aligned_cols=60 Identities=18% Similarity=0.107 Sum_probs=40.7
Q ss_pred CCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCCc---------CEEEecCHHHHHHHHHh-cccccccC
Q 040102 40 ALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSV---------PCIVACSPETAKEILKT-HETSFCDR 101 (308)
Q Consensus 40 ~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~---------~~vvi~d~e~~~evl~~-~~~~f~~R 101 (308)
..-++||++. ......+.+...+||++..+.+-.. =+|-..+++.+..++.. ++..+.+|
T Consensus 89 ~~l~v~nl~~--~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 89 ANLYVSGLPK--TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp CEEEEESCCT--TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred CcEEECCCCC--cCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 3457788753 2235678888889999988776432 25667899999999863 44455444
No 253
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.91 E-value=1.1e+02 Score=19.87 Aligned_cols=62 Identities=8% Similarity=0.016 Sum_probs=41.5
Q ss_pred CCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC--------cCEEEecCHHHHHHHHHhcccccccCC
Q 040102 38 PMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS--------VPCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 38 P~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~--------~~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
+...-++||++.- .....+.++...| +|..+.+-. .-+|...+++.++.++.-++..+.+|+
T Consensus 9 ~~~~l~v~nLp~~--~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~ 78 (91)
T 2dgw_A 9 TCHTVKLRGAPFN--VTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRY 78 (91)
T ss_dssp CCCEEEEECCCSS--CCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEE
T ss_pred CccEEEEECCCCC--CCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcE
Confidence 3445688998642 2345677777788 776666521 346777899999999986666666664
No 254
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=28.84 E-value=1.3e+02 Score=20.08 Aligned_cols=53 Identities=17% Similarity=0.250 Sum_probs=38.4
Q ss_pred CCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHH
Q 040102 38 PMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILK 92 (308)
Q Consensus 38 P~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~ 92 (308)
+...-++||+.. ......+.++..+||+|..+.+-. .=+|-..+++.++.++.
T Consensus 12 ~~~~l~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 73 (106)
T 2dgp_A 12 DAIKLFIGQIPR--NLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQS 73 (106)
T ss_dssp TCEEEEEESCCT--TCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCC--CCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHH
Confidence 334568899863 233567888888999998888743 23566779999999886
No 255
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.54 E-value=33 Score=24.18 Aligned_cols=60 Identities=12% Similarity=0.025 Sum_probs=41.2
Q ss_pred CCeeeecccCCCCchHHHHHHHHhcCC---eeEEecC--------CcCEEEecCHHHHHHHHHhcccccccCC
Q 040102 41 LPIIGHLHLLAPIPHQALHKLSIRYGP---LIHLFLG--------SVPCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 41 ~PllGnl~~l~~~~~~~~~~~~~~yG~---i~~~~~g--------~~~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
.-++||+..- .-...+.++...||. |..+++- +.-+|...+++.++.++..++..+.+|+
T Consensus 19 ~l~V~nLp~~--~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~ 89 (118)
T 2db1_A 19 VVKLRGLPWS--CSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRY 89 (118)
T ss_dssp EEEEESCCTT--CCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEE
T ss_pred EEEEeCCCCC--CCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeE
Confidence 4678998642 235568888888997 5555542 1347788899999999986666555554
No 256
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=25.91 E-value=43 Score=23.32 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=34.7
Q ss_pred hHHHHHHHHhcCCeeEEecCC-cCEEEecCHHHHHHHHH--hcccccccC
Q 040102 55 HQALHKLSIRYGPLIHLFLGS-VPCIVACSPETAKEILK--THETSFCDR 101 (308)
Q Consensus 55 ~~~~~~~~~~yG~i~~~~~g~-~~~vvi~d~e~~~evl~--~~~~~f~~R 101 (308)
..-+.++...||.+.-=|+.. .-.+++++++.|++++. ++...|.-|
T Consensus 19 t~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~~~~~y~i~ 68 (101)
T 3ctr_A 19 TSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNTSKYAESYRIQ 68 (101)
T ss_dssp HHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHHHHTTCSSCCCC
T ss_pred hHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcccCCceEEE
Confidence 456777778899888888886 45677889999999997 334444333
No 257
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=25.08 E-value=1.5e+02 Score=23.11 Aligned_cols=63 Identities=5% Similarity=0.069 Sum_probs=44.2
Q ss_pred CCCeeeecccCCCCchHHHHHHHHhcCCeeEEecC----CcCEEEecCHHHHHHHHH-hcccccccCCc
Q 040102 40 ALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLG----SVPCIVACSPETAKEILK-THETSFCDRPI 103 (308)
Q Consensus 40 ~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g----~~~~vvi~d~e~~~evl~-~~~~~f~~Rp~ 103 (308)
..-++||+... .--...+.++..+||+|..+.+- +.=+|...+++.|+.++. =++..+.+|+.
T Consensus 5 ~~l~V~nL~~~-~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 72 (205)
T 3tyt_A 5 PVLMVYGLDQS-KMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKM 72 (205)
T ss_dssp SEEEEECCCTT-TCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CEEEEeCCCcc-cCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceE
Confidence 34588998621 22345788888899999998864 356777789999998885 35566666653
No 258
>1b35_D CRPV, protein (cricket paralysis virus, VP4); insect picorna-like virus, icosahedral virus; 2.40A {Cricket paralysis virus} SCOP: b.121.4.1
Probab=24.87 E-value=28 Score=20.58 Aligned_cols=11 Identities=18% Similarity=0.685 Sum_probs=8.7
Q ss_pred CCCeeeecccC
Q 040102 40 ALPIIGHLHLL 50 (308)
Q Consensus 40 ~~PllGnl~~l 50 (308)
..|++||++.-
T Consensus 30 ~ipilgn~fs~ 40 (57)
T 1b35_D 30 HIPVLGNIFST 40 (57)
T ss_dssp CCCCSCCSSSS
T ss_pred ccccccccccc
Confidence 47999999754
No 259
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=24.39 E-value=1.3e+02 Score=20.47 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=28.8
Q ss_pred HhcCCeeEEecCC--------cCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 63 IRYGPLIHLFLGS--------VPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 63 ~~yG~i~~~~~g~--------~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
.+||+|..+++-. .=+|...+++.|+.+... ++..|.+|+
T Consensus 49 ~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 49 EKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp HHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred ccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 7899999998753 234666799988888753 556666665
No 260
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=23.79 E-value=1.2e+02 Score=22.18 Aligned_cols=59 Identities=12% Similarity=0.211 Sum_probs=38.2
Q ss_pred CeeeecccCCCCchHHHHHHHHhc----C-------CeeEEecCC---cCEEEecCHHHHHHHHHhcccccccCC
Q 040102 42 PIIGHLHLLAPIPHQALHKLSIRY----G-------PLIHLFLGS---VPCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 42 PllGnl~~l~~~~~~~~~~~~~~y----G-------~i~~~~~g~---~~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
=++||++.- .....+.++..+| | ++...+++. .=+|-..+++.|+.++.-++..+.+|+
T Consensus 7 l~V~nLp~~--~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~ 79 (172)
T 2g4b_A 7 LYVGNIPFG--ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQS 79 (172)
T ss_dssp EEEESCCTT--CCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred EEEcCCCcc--cCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCce
Confidence 367887542 2234455555555 7 788887753 446777899999999955556665554
No 261
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=23.16 E-value=1.7e+02 Score=20.99 Aligned_cols=62 Identities=11% Similarity=0.167 Sum_probs=41.6
Q ss_pred CCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---------cCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 39 MALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---------VPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 39 ~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
...-++||++.- .....+.+...+||+|..+.+-. .=+|-..+++.|..++.. ++..+.+|+
T Consensus 87 ~~~l~v~nl~~~--~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 158 (166)
T 3md3_A 87 TFNLFVGDLNVN--VDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 158 (166)
T ss_dssp CEEEEEESCCTT--CCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CceEEECCCCCC--CCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Confidence 345678887532 23567778888999988877632 135667799999999863 445555544
No 262
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.85 E-value=79 Score=21.10 Aligned_cols=65 Identities=17% Similarity=0.133 Sum_probs=41.7
Q ss_pred CCCCCCCeeeecccCCCCchHHHHHHHHhcCCeeEEec--C---CcCEEEecCHHHHHHHHHh-cccccccCC
Q 040102 36 PSPMALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFL--G---SVPCIVACSPETAKEILKT-HETSFCDRP 102 (308)
Q Consensus 36 PgP~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~--g---~~~~vvi~d~e~~~evl~~-~~~~f~~Rp 102 (308)
+.|...-++||++. ......+.++..+||+|....- | +.=+|...+++.++.++.. ++..+.+|+
T Consensus 12 ~~~~~~l~V~nLp~--~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 82 (101)
T 2fc9_A 12 SGESKTLVLSNLSY--SATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRA 82 (101)
T ss_dssp SCCCSEEEEESCCT--TCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEE
T ss_pred CCCCCEEEEeCCCC--CCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeE
Confidence 34455678899864 2335567777788998743332 1 2335777899999999873 445555554
No 263
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.45 E-value=1.3e+02 Score=20.55 Aligned_cols=47 Identities=13% Similarity=0.129 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCeeEEe-cCCcCEEEecCHHHHHHHHHhcccccccCC
Q 040102 56 QALHKLSIRYGPLIHLF-LGSVPCIVACSPETAKEILKTHETSFCDRP 102 (308)
Q Consensus 56 ~~~~~~~~~yG~i~~~~-~g~~~~vvi~d~e~~~evl~~~~~~f~~Rp 102 (308)
..+.+....||.+..++ ...+=+|...|.+.|..++.-++..+.+|.
T Consensus 39 ~~L~~~F~~~G~Vilvr~v~d~~fVtF~d~~sAl~AI~ldG~~v~Gr~ 86 (95)
T 1ufw_A 39 TELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLDVDGMKVKGRA 86 (95)
T ss_dssp HHHHHHHHHHSCCSEEEEETTEEEEECSCSHHHHHHHHGGGSEETTEE
T ss_pred HHHHHHHHHCCCEEEEEEecCcEEEEEcChHHHHHHHhcCCeeeCCeE
Confidence 34555556799888888 556777888899999999987777776664
No 264
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=21.81 E-value=1.7e+02 Score=21.35 Aligned_cols=53 Identities=9% Similarity=0.086 Sum_probs=37.9
Q ss_pred CCCCeeeecccCCCCchHHHHHHHHhcCCeeEEecCCc--------CEEEecCHHHHHHHHHh
Q 040102 39 MALPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGSV--------PCIVACSPETAKEILKT 93 (308)
Q Consensus 39 ~~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~~--------~~vvi~d~e~~~evl~~ 93 (308)
...-++||++. ......+.+...+||+|..+.+-.. =+|-..+++.|+.++..
T Consensus 95 ~~~l~v~nl~~--~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 95 DRKLFIGMISK--KCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp GSEEEEESCCT--TCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCeEEEcCCCC--cCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHH
Confidence 34567788753 2235668888889999988876432 36777899999999854
No 265
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=21.16 E-value=1.1e+02 Score=24.72 Aligned_cols=61 Identities=23% Similarity=0.283 Sum_probs=43.4
Q ss_pred CCeeeecccCCCCchHHHHHHHHhcCCeeEEecCC---cCEEEecCHHHHHHHHH-hcccccccCCc
Q 040102 41 LPIIGHLHLLAPIPHQALHKLSIRYGPLIHLFLGS---VPCIVACSPETAKEILK-THETSFCDRPI 103 (308)
Q Consensus 41 ~PllGnl~~l~~~~~~~~~~~~~~yG~i~~~~~g~---~~~vvi~d~e~~~evl~-~~~~~f~~Rp~ 103 (308)
.-++||++. ......+.++...||+|..+.++. .=+|-..+++.|+.++. -++..+.+|+.
T Consensus 24 ~l~V~nLp~--~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l 88 (261)
T 3sde_A 24 RLFVGNLPT--DITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPL 88 (261)
T ss_dssp EEEEESCCT--TCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred EEEEECCCC--CCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCcee
Confidence 348899853 223567788888999999888763 34666779999999986 35556666653
No 266
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=20.45 E-value=2e+02 Score=20.21 Aligned_cols=61 Identities=13% Similarity=0.104 Sum_probs=36.9
Q ss_pred CCCeeeecccCCCCchHHHHHHHHhcCCeeE--EecCC---------cCEEEecCHHHHHHHHH-hccc----ccccCCc
Q 040102 40 ALPIIGHLHLLAPIPHQALHKLSIRYGPLIH--LFLGS---------VPCIVACSPETAKEILK-THET----SFCDRPI 103 (308)
Q Consensus 40 ~~PllGnl~~l~~~~~~~~~~~~~~yG~i~~--~~~g~---------~~~vvi~d~e~~~evl~-~~~~----~f~~Rp~ 103 (308)
..-++||+..- .-...+.++..+||+|.. +++-. -=+|-..++ .+..++. -++. .+.+|+.
T Consensus 24 ~~lfV~nL~~~--~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l 100 (131)
T 2m2b_A 24 DTIILRNLNPH--STMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTI 100 (131)
T ss_dssp CEEEECSCCTT--CCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCC
T ss_pred CEEEEeCCCCC--CCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEE
Confidence 34588888542 234678888889999844 44432 225666677 6665554 3444 5666654
No 267
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=20.29 E-value=1.8e+02 Score=23.55 Aligned_cols=64 Identities=14% Similarity=0.254 Sum_probs=42.0
Q ss_pred CCCCeeeecccCCC--CchHHHHHHHHhcCCeeEEecCC------cCEEEecCHHHHHHHHH-hcccccccCC
Q 040102 39 MALPIIGHLHLLAP--IPHQALHKLSIRYGPLIHLFLGS------VPCIVACSPETAKEILK-THETSFCDRP 102 (308)
Q Consensus 39 ~~~PllGnl~~l~~--~~~~~~~~~~~~yG~i~~~~~g~------~~~vvi~d~e~~~evl~-~~~~~f~~Rp 102 (308)
...-++||+..-.. ...+.+.++..+||+|..+.+-. .=+|...+++.++.++. -++..+.+|+
T Consensus 9 ~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34568999864311 11223667888999998888532 45677779999999884 3455555554
Done!