Query 040104
Match_columns 105
No_of_seqs 122 out of 1553
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 05:11:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040104.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040104hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1062 AdhC Zn-dependent alco 99.8 5.5E-19 1.2E-23 114.8 7.4 102 4-105 242-348 (366)
2 KOG0024 Sorbitol dehydrogenase 99.8 1.5E-17 3.2E-22 107.6 9.8 102 3-104 228-331 (354)
3 TIGR01202 bchC 2-desacetyl-2-h 99.7 5.4E-17 1.2E-21 106.1 7.2 91 14-104 198-289 (308)
4 COG1063 Tdh Threonine dehydrog 99.7 1.5E-16 3.4E-21 105.7 8.7 101 4-104 225-329 (350)
5 TIGR03366 HpnZ_proposed putati 99.7 1.5E-16 3.2E-21 102.8 8.2 99 6-104 176-280 (280)
6 KOG0022 Alcohol dehydrogenase, 99.7 2E-16 4.3E-21 102.1 7.6 101 5-105 251-357 (375)
7 cd08281 liver_ADH_like1 Zinc-d 99.7 4.7E-16 1E-20 103.8 9.1 102 3-104 246-353 (371)
8 PF00107 ADH_zinc_N: Zinc-bind 99.7 3E-16 6.5E-21 90.8 6.4 84 3-86 44-130 (130)
9 TIGR03451 mycoS_dep_FDH mycoth 99.7 6.2E-16 1.3E-20 102.8 8.5 101 4-104 232-339 (358)
10 PLN02827 Alcohol dehydrogenase 99.6 1.4E-15 3E-20 101.9 8.8 101 4-104 251-357 (378)
11 PRK09880 L-idonate 5-dehydroge 99.6 1.1E-15 2.4E-20 101.1 8.1 90 15-104 234-323 (343)
12 TIGR03201 dearomat_had 6-hydro 99.6 4E-15 8.7E-20 98.6 9.6 100 4-104 224-329 (349)
13 cd08238 sorbose_phosphate_red 99.6 2.5E-15 5.4E-20 101.7 7.9 101 4-104 244-349 (410)
14 cd08233 butanediol_DH_like (2R 99.6 7.4E-15 1.6E-19 97.3 9.6 101 4-104 228-330 (351)
15 COG1064 AdhP Zn-dependent alco 99.6 3.9E-15 8.5E-20 97.8 7.4 86 17-105 230-318 (339)
16 PLN02740 Alcohol dehydrogenase 99.6 6.1E-15 1.3E-19 98.9 8.5 100 5-104 257-362 (381)
17 cd08239 THR_DH_like L-threonin 99.6 7.5E-15 1.6E-19 96.8 8.7 98 6-104 220-320 (339)
18 PRK10309 galactitol-1-phosphat 99.6 1E-14 2.2E-19 96.5 9.3 98 7-104 218-326 (347)
19 COG0604 Qor NADPH:quinone redu 99.6 5.2E-14 1.1E-18 92.9 9.4 98 3-103 197-304 (326)
20 cd08237 ribitol-5-phosphate_DH 99.5 1.6E-14 3.5E-19 95.6 6.7 88 16-103 222-316 (341)
21 PLN02178 cinnamyl-alcohol dehy 99.5 3E-14 6.5E-19 95.5 7.9 93 8-104 235-328 (375)
22 TIGR02819 fdhA_non_GSH formald 99.5 2.9E-14 6.4E-19 96.1 7.1 101 4-104 241-371 (393)
23 cd08301 alcohol_DH_plants Plan 99.5 6.9E-14 1.5E-18 93.4 8.6 101 4-104 245-351 (369)
24 TIGR02818 adh_III_F_hyde S-(hy 99.5 1.5E-13 3.2E-18 91.9 9.1 99 5-104 244-349 (368)
25 cd08277 liver_alcohol_DH_like 99.5 1.8E-13 3.8E-18 91.3 9.3 99 5-104 243-347 (365)
26 cd08300 alcohol_DH_class_III c 99.5 1.6E-13 3.5E-18 91.6 9.1 100 4-104 244-350 (368)
27 PLN02586 probable cinnamyl alc 99.5 1.4E-13 2.9E-18 91.9 7.8 93 8-104 240-333 (360)
28 PLN02514 cinnamyl-alcohol dehy 99.5 2E-13 4.4E-18 90.9 8.0 92 9-104 238-330 (357)
29 KOG1197 Predicted quinone oxid 99.5 5.2E-14 1.1E-18 89.0 4.8 100 2-104 200-310 (336)
30 PLN03154 putative allyl alcoho 99.5 1.6E-13 3.4E-18 91.2 6.9 98 4-104 216-325 (348)
31 cd08230 glucose_DH Glucose deh 99.5 1.8E-13 3.8E-18 91.0 6.9 91 14-104 236-337 (355)
32 cd08231 MDR_TM0436_like Hypoth 99.4 3.4E-12 7.4E-17 84.9 8.9 98 7-104 239-342 (361)
33 cd08291 ETR_like_1 2-enoyl thi 99.4 2.7E-12 5.9E-17 84.2 7.3 97 4-104 199-305 (324)
34 KOG0023 Alcohol dehydrogenase, 99.3 1E-11 2.2E-16 80.8 8.3 97 3-104 237-334 (360)
35 TIGR02822 adh_fam_2 zinc-bindi 99.3 1.1E-11 2.4E-16 81.8 6.5 87 15-104 222-310 (329)
36 cd08285 NADP_ADH NADP(H)-depen 99.3 4.3E-11 9.4E-16 79.4 8.7 101 4-104 222-330 (351)
37 cd08286 FDH_like_ADH2 formalde 99.3 4.5E-11 9.7E-16 79.0 8.5 100 5-104 223-323 (345)
38 cd05279 Zn_ADH1 Liver alcohol 99.3 3.7E-11 8E-16 80.3 8.0 100 4-104 241-347 (365)
39 cd08256 Zn_ADH2 Alcohol dehydr 99.3 5.8E-11 1.3E-15 78.7 8.8 100 5-104 231-332 (350)
40 cd08265 Zn_ADH3 Alcohol dehydr 99.2 6.9E-11 1.5E-15 79.5 9.0 101 4-104 262-366 (384)
41 PLN02702 L-idonate 5-dehydroge 99.2 1.1E-10 2.3E-15 78.0 9.5 88 14-101 252-339 (364)
42 cd08287 FDH_like_ADH3 formalde 99.2 5.2E-11 1.1E-15 78.7 7.9 100 5-104 225-326 (345)
43 cd08295 double_bond_reductase_ 99.2 5.2E-11 1.1E-15 78.7 7.5 98 4-104 209-318 (338)
44 PRK10083 putative oxidoreducta 99.2 5.3E-11 1.2E-15 78.5 7.4 89 16-104 228-316 (339)
45 cd05285 sorbitol_DH Sorbitol d 99.2 1.5E-10 3.3E-15 76.6 9.0 99 6-104 223-322 (343)
46 cd08284 FDH_like_2 Glutathione 99.2 1.2E-10 2.5E-15 77.0 8.3 101 4-104 222-325 (344)
47 PRK05396 tdh L-threonine 3-deh 99.2 1.9E-10 4.2E-15 76.0 9.1 100 4-104 219-321 (341)
48 TIGR02825 B4_12hDH leukotriene 99.2 8.1E-11 1.8E-15 77.3 7.2 97 5-104 196-306 (325)
49 COG2130 Putative NADP-dependen 99.2 9.2E-11 2E-15 75.9 7.1 91 2-93 205-309 (340)
50 cd08246 crotonyl_coA_red croto 99.2 1.1E-10 2.3E-15 78.7 7.7 97 5-104 272-372 (393)
51 cd08242 MDR_like Medium chain 99.2 1.5E-10 3.2E-15 75.8 7.9 89 14-104 212-300 (319)
52 TIGR00692 tdh L-threonine 3-de 99.2 2.2E-10 4.7E-15 75.7 8.4 101 4-104 217-321 (340)
53 cd08258 Zn_ADH4 Alcohol dehydr 99.2 4.4E-10 9.5E-15 73.5 9.5 84 4-87 220-306 (306)
54 cd08283 FDH_like_1 Glutathione 99.2 2.5E-10 5.5E-15 76.9 8.5 100 5-104 242-365 (386)
55 cd08278 benzyl_alcohol_DH Benz 99.2 2E-10 4.4E-15 76.7 7.7 99 5-104 243-347 (365)
56 cd08240 6_hydroxyhexanoate_dh_ 99.1 4E-10 8.6E-15 74.7 8.6 98 5-104 232-330 (350)
57 cd08262 Zn_ADH8 Alcohol dehydr 99.1 4.2E-10 9.2E-15 74.3 8.7 96 9-104 225-322 (341)
58 PF13602 ADH_zinc_N_2: Zinc-bi 99.1 3.6E-12 7.7E-17 73.5 -1.5 83 14-104 17-109 (127)
59 cd08260 Zn_ADH6 Alcohol dehydr 99.1 6.2E-10 1.3E-14 73.6 8.6 101 4-104 221-325 (345)
60 cd08282 PFDH_like Pseudomonas 99.1 5.2E-10 1.1E-14 75.0 8.2 101 4-104 231-356 (375)
61 cd08294 leukotriene_B4_DH_like 99.1 3E-10 6.5E-15 74.5 6.7 98 4-104 199-309 (329)
62 cd05281 TDH Threonine dehydrog 99.1 8.4E-10 1.8E-14 73.0 8.7 97 8-104 222-322 (341)
63 cd08269 Zn_ADH9 Alcohol dehydr 99.1 7.8E-10 1.7E-14 71.9 8.4 101 4-104 185-292 (312)
64 cd08296 CAD_like Cinnamyl alco 99.1 6.8E-10 1.5E-14 73.3 8.2 95 5-104 219-314 (333)
65 cd08292 ETR_like_2 2-enoyl thi 99.1 1E-09 2.2E-14 71.8 8.9 98 4-104 195-305 (324)
66 cd08274 MDR9 Medium chain dehy 99.1 3.1E-10 6.6E-15 75.0 6.5 91 11-104 237-330 (350)
67 TIGR01751 crot-CoA-red crotony 99.1 5.2E-10 1.1E-14 75.6 7.4 97 5-104 268-367 (398)
68 cd08263 Zn_ADH10 Alcohol dehyd 99.1 9.1E-10 2E-14 73.5 8.4 101 4-104 243-348 (367)
69 cd08261 Zn_ADH7 Alcohol dehydr 99.1 1.3E-09 2.8E-14 71.9 8.7 100 5-104 215-316 (337)
70 cd08235 iditol_2_DH_like L-idi 99.1 1.3E-09 2.9E-14 71.9 8.5 100 5-104 222-325 (343)
71 cd08232 idonate-5-DH L-idonate 99.1 1.1E-09 2.3E-14 72.3 7.8 90 15-104 230-319 (339)
72 cd08279 Zn_ADH_class_III Class 99.1 1.7E-09 3.7E-14 72.2 8.7 101 4-104 238-345 (363)
73 cd08299 alcohol_DH_class_I_II_ 99.1 1.8E-09 3.8E-14 72.5 8.7 100 5-104 249-354 (373)
74 cd05283 CAD1 Cinnamyl alcohol 99.1 7.6E-10 1.6E-14 73.1 6.8 88 14-104 230-318 (337)
75 cd05284 arabinose_DH_like D-ar 99.0 2.7E-09 5.9E-14 70.4 9.4 96 5-104 223-320 (340)
76 cd05278 FDH_like Formaldehyde 99.0 3.4E-09 7.5E-14 70.0 8.7 101 4-104 223-326 (347)
77 PRK13771 putative alcohol dehy 99.0 2.7E-09 5.9E-14 70.2 7.5 86 16-104 225-313 (334)
78 KOG1198 Zinc-binding oxidoredu 99.0 8.9E-10 1.9E-14 73.4 5.2 99 3-104 212-325 (347)
79 cd08254 hydroxyacyl_CoA_DH 6-h 99.0 4.3E-09 9.4E-14 69.1 8.0 88 14-104 230-318 (338)
80 cd08236 sugar_DH NAD(P)-depend 98.9 9.8E-09 2.1E-13 67.8 8.9 99 6-104 216-324 (343)
81 cd00401 AdoHcyase S-adenosyl-L 98.9 1.8E-09 4E-14 73.3 5.5 85 16-102 257-352 (413)
82 cd08297 CAD3 Cinnamyl alcohol 98.9 7.2E-09 1.6E-13 68.4 8.1 98 4-104 221-321 (341)
83 cd05282 ETR_like 2-enoyl thioe 98.9 1.5E-08 3.2E-13 66.2 9.1 98 4-104 194-304 (323)
84 cd08276 MDR7 Medium chain dehy 98.9 1.1E-08 2.3E-13 67.1 8.0 98 4-104 216-316 (336)
85 cd08234 threonine_DH_like L-th 98.9 1.2E-08 2.6E-13 67.1 8.2 91 14-104 224-316 (334)
86 cd08293 PTGR2 Prostaglandin re 98.9 1.2E-08 2.6E-13 67.5 8.1 98 4-104 212-325 (345)
87 cd08264 Zn_ADH_like2 Alcohol d 98.9 9E-09 2E-13 67.5 7.4 92 7-104 215-308 (325)
88 cd08244 MDR_enoyl_red Possible 98.9 1.3E-08 2.7E-13 66.6 7.6 98 4-104 198-304 (324)
89 cd05288 PGDH Prostaglandin deh 98.9 1.5E-08 3.3E-13 66.4 7.3 98 4-104 202-311 (329)
90 PRK09422 ethanol-active dehydr 98.8 2E-08 4.3E-13 66.2 7.6 96 5-104 220-316 (338)
91 cd08266 Zn_ADH_like1 Alcohol d 98.8 3.5E-08 7.5E-13 64.7 8.2 97 5-104 223-322 (342)
92 cd08290 ETR 2-enoyl thioester 98.8 5.4E-08 1.2E-12 64.2 8.0 98 4-104 209-321 (341)
93 PRK10754 quinone oxidoreductas 98.8 1.9E-08 4.1E-13 66.0 5.5 100 4-104 196-307 (327)
94 KOG1196 Predicted NAD-dependen 98.8 3.2E-08 6.8E-13 64.3 6.2 89 4-93 211-311 (343)
95 cd08255 2-desacetyl-2-hydroxye 98.8 6.1E-08 1.3E-12 62.3 7.4 88 14-104 157-258 (277)
96 KOG0025 Zn2+-binding dehydroge 98.7 7.6E-08 1.7E-12 62.4 7.6 86 15-103 232-330 (354)
97 cd08243 quinone_oxidoreductase 98.7 5.4E-08 1.2E-12 63.3 6.9 96 5-104 198-301 (320)
98 PTZ00354 alcohol dehydrogenase 98.7 1.3E-07 2.8E-12 62.0 8.7 97 5-104 198-308 (334)
99 cd08270 MDR4 Medium chain dehy 98.7 6.9E-08 1.5E-12 62.7 6.1 88 14-104 190-285 (305)
100 cd08259 Zn_ADH5 Alcohol dehydr 98.7 1.8E-07 3.9E-12 61.3 7.6 86 16-104 226-313 (332)
101 TIGR02823 oxido_YhdH putative 98.6 3.7E-07 8.1E-12 59.8 8.7 92 9-104 204-303 (323)
102 cd05276 p53_inducible_oxidored 98.6 4.5E-07 9.8E-12 58.8 8.9 97 5-104 196-305 (323)
103 PRK09424 pntA NAD(P) transhydr 98.6 2.6E-07 5.7E-12 64.4 7.7 82 15-96 247-339 (509)
104 cd08241 QOR1 Quinone oxidoredu 98.6 3E-07 6.5E-12 59.7 7.6 96 5-103 196-303 (323)
105 cd08250 Mgc45594_like Mgc45594 98.6 2.2E-07 4.8E-12 61.0 6.9 96 7-104 198-310 (329)
106 cd08252 AL_MDR Arginate lyase 98.6 6.9E-07 1.5E-11 58.8 8.5 95 6-104 207-317 (336)
107 cd08253 zeta_crystallin Zeta-c 98.6 3.7E-07 7.9E-12 59.3 7.0 97 5-104 201-305 (325)
108 cd08289 MDR_yhfp_like Yhfp put 98.6 5.6E-07 1.2E-11 59.0 7.8 96 7-104 204-306 (326)
109 cd05286 QOR2 Quinone oxidoredu 98.6 5.3E-07 1.1E-11 58.4 7.6 97 5-104 193-300 (320)
110 cd08272 MDR6 Medium chain dehy 98.5 6.1E-07 1.3E-11 58.4 7.6 94 5-104 199-306 (326)
111 cd05280 MDR_yhdh_yhfp Yhdh and 98.5 4.6E-07 9.9E-12 59.3 6.8 87 14-104 211-305 (325)
112 cd08298 CAD2 Cinnamyl alcohol 98.5 7.1E-07 1.5E-11 58.7 7.2 86 15-104 224-311 (329)
113 cd08275 MDR3 Medium chain dehy 98.5 1.2E-06 2.7E-11 57.3 8.4 97 5-104 195-317 (337)
114 TIGR02824 quinone_pig3 putativ 98.5 1.4E-06 3E-11 56.6 8.0 96 5-103 196-304 (325)
115 cd08245 CAD Cinnamyl alcohol d 98.4 1.1E-06 2.3E-11 57.8 6.7 87 15-104 224-312 (330)
116 cd08249 enoyl_reductase_like e 98.4 2E-06 4.3E-11 57.0 7.6 97 4-103 209-317 (339)
117 cd05188 MDR Medium chain reduc 98.4 4E-06 8.6E-11 53.3 8.2 71 14-84 199-271 (271)
118 cd05195 enoyl_red enoyl reduct 98.4 3.3E-06 7.1E-11 53.9 7.8 96 4-103 166-274 (293)
119 cd05289 MDR_like_2 alcohol deh 98.4 8.9E-07 1.9E-11 57.2 5.1 84 14-104 206-291 (309)
120 TIGR02817 adh_fam_1 zinc-bindi 98.4 6E-06 1.3E-10 54.4 9.0 91 5-100 205-308 (336)
121 smart00829 PKS_ER Enoylreducta 98.3 4E-06 8.6E-11 53.5 6.6 96 5-104 163-270 (288)
122 cd08251 polyketide_synthase po 98.3 1.3E-06 2.8E-11 56.4 3.8 97 4-104 176-285 (303)
123 cd08273 MDR8 Medium chain dehy 98.2 5.8E-06 1.3E-10 54.3 6.0 88 14-104 201-312 (331)
124 cd08268 MDR2 Medium chain dehy 98.2 1.6E-05 3.5E-10 51.7 7.9 96 5-103 201-307 (328)
125 cd08271 MDR5 Medium chain dehy 98.2 5.2E-06 1.1E-10 54.1 5.3 96 5-103 197-304 (325)
126 cd08247 AST1_like AST1 is a cy 98.1 1.5E-05 3.3E-10 53.0 6.8 89 14-104 223-332 (352)
127 cd08288 MDR_yhdh Yhdh putative 98.1 1.7E-05 3.7E-10 52.0 6.9 93 8-104 204-304 (324)
128 cd08267 MDR1 Medium chain dehy 98.0 1.4E-05 3E-10 52.1 5.5 89 14-104 206-301 (319)
129 cd08248 RTN4I1 Human Reticulon 97.9 6E-06 1.3E-10 54.7 2.4 87 15-104 226-331 (350)
130 KOG1202 Animal-type fatty acid 97.8 3.2E-05 6.9E-10 58.7 4.0 99 4-104 1612-1721(2376)
131 PRK11873 arsM arsenite S-adeno 96.9 0.0021 4.6E-08 41.6 4.6 35 15-49 145-185 (272)
132 PRK05476 S-adenosyl-L-homocyst 94.5 0.095 2.1E-06 36.5 4.6 36 16-51 267-303 (425)
133 smart00846 Gp_dh_N Glyceraldeh 94.4 0.082 1.8E-06 31.5 3.8 37 15-51 86-122 (149)
134 PF00044 Gp_dh_N: Glyceraldehy 94.2 0.077 1.7E-06 31.8 3.2 36 16-51 88-123 (151)
135 TIGR00438 rrmJ cell division p 94.0 0.36 7.8E-06 29.6 6.1 43 6-48 87-147 (188)
136 TIGR01532 E4PD_g-proteo D-eryt 93.7 0.13 2.8E-06 34.6 4.0 36 15-50 88-123 (325)
137 TIGR00561 pntA NAD(P) transhyd 92.6 0.34 7.4E-06 34.6 4.9 57 15-71 246-312 (511)
138 TIGR00936 ahcY adenosylhomocys 92.0 0.37 8E-06 33.5 4.4 35 16-50 250-285 (406)
139 PLN02358 glyceraldehyde-3-phos 92.0 0.48 1E-05 32.1 4.9 37 15-51 94-130 (338)
140 PTZ00434 cytosolic glyceraldeh 90.8 0.37 8.1E-06 32.9 3.4 69 16-84 104-179 (361)
141 PF04019 DUF359: Protein of un 90.8 1.9 4.1E-05 24.9 5.8 49 3-51 48-96 (121)
142 PRK15425 gapA glyceraldehyde-3 90.6 0.66 1.4E-05 31.4 4.4 35 16-50 89-123 (331)
143 TIGR01534 GAPDH-I glyceraldehy 89.9 0.7 1.5E-05 31.2 4.1 35 16-50 90-124 (327)
144 PLN03096 glyceraldehyde-3-phos 89.9 0.78 1.7E-05 31.8 4.4 36 15-50 149-184 (395)
145 PLN02494 adenosylhomocysteinas 89.7 0.56 1.2E-05 33.3 3.6 35 16-50 309-344 (477)
146 PRK08306 dipicolinate synthase 89.6 2.2 4.7E-05 28.3 6.2 53 15-69 209-261 (296)
147 COG4122 Predicted O-methyltran 89.4 1.3 2.9E-05 28.2 4.9 45 4-48 120-167 (219)
148 PRK07729 glyceraldehyde-3-phos 89.2 1.2 2.7E-05 30.3 4.9 35 15-49 88-122 (343)
149 PRK13535 erythrose 4-phosphate 89.2 1 2.2E-05 30.6 4.4 35 15-49 90-124 (336)
150 PRK08955 glyceraldehyde-3-phos 89.1 0.9 2E-05 30.8 4.1 34 16-49 88-121 (334)
151 PRK07403 glyceraldehyde-3-phos 88.8 0.99 2.1E-05 30.6 4.2 34 16-49 90-123 (337)
152 PTZ00023 glyceraldehyde-3-phos 88.7 1 2.2E-05 30.6 4.2 36 15-50 89-124 (337)
153 PF03447 NAD_binding_3: Homose 87.9 1.8 3.8E-05 24.3 4.4 31 16-46 59-89 (117)
154 PLN02237 glyceraldehyde-3-phos 87.6 1.9 4.2E-05 30.4 5.1 36 15-50 164-199 (442)
155 PRK00536 speE spermidine synth 87.4 1.7 3.7E-05 28.5 4.5 35 14-48 137-172 (262)
156 COG0057 GapA Glyceraldehyde-3- 87.1 3.1 6.8E-05 28.2 5.6 72 15-86 88-166 (335)
157 PRK13942 protein-L-isoaspartat 86.5 1.6 3.5E-05 27.4 4.0 32 15-46 144-175 (212)
158 PRK00377 cbiT cobalt-precorrin 86.3 2.2 4.8E-05 26.3 4.5 32 15-46 110-144 (198)
159 PF01113 DapB_N: Dihydrodipico 85.5 1.7 3.6E-05 24.9 3.4 33 17-50 68-100 (124)
160 PRK13943 protein-L-isoaspartat 85.3 2 4.3E-05 29.0 4.1 32 15-46 148-179 (322)
161 PRK01160 hypothetical protein; 84.2 7 0.00015 24.2 5.8 49 3-51 98-149 (178)
162 PRK13944 protein-L-isoaspartat 84.1 2.2 4.8E-05 26.6 3.8 32 15-46 141-172 (205)
163 PLN02272 glyceraldehyde-3-phos 84.1 2.2 4.8E-05 29.9 4.0 35 16-50 174-208 (421)
164 TIGR02469 CbiT precorrin-6Y C5 83.8 3.2 7E-05 23.0 4.1 33 15-47 87-122 (124)
165 PF06080 DUF938: Protein of un 83.1 3.5 7.7E-05 26.0 4.3 67 29-95 123-191 (204)
166 PTZ00353 glycosomal glyceralde 83.0 2.1 4.5E-05 29.2 3.5 32 16-47 92-123 (342)
167 COG1092 Predicted SAM-dependen 82.0 5.8 0.00013 27.6 5.4 48 3-50 275-339 (393)
168 PRK11188 rrmJ 23S rRNA methylt 81.9 7.3 0.00016 24.5 5.5 40 7-46 107-164 (209)
169 PRK14967 putative methyltransf 81.5 8.1 0.00018 24.3 5.6 18 30-47 142-159 (223)
170 PTZ00075 Adenosylhomocysteinas 81.5 1.6 3.5E-05 31.1 2.6 35 16-50 309-344 (476)
171 PF01188 MR_MLE: Mandelate rac 81.5 4 8.6E-05 20.6 3.5 35 6-41 2-36 (67)
172 TIGR00080 pimt protein-L-isoas 81.2 3.1 6.7E-05 26.0 3.7 31 16-46 146-176 (215)
173 KOG4300 Predicted methyltransf 81.2 1.8 4E-05 27.7 2.5 36 12-47 141-182 (252)
174 COG1909 Uncharacterized protei 81.1 9.8 0.00021 23.2 5.5 49 4-52 94-142 (167)
175 COG2519 GCD14 tRNA(1-methylade 80.6 3.8 8.2E-05 26.8 3.9 34 15-48 162-196 (256)
176 COG2518 Pcm Protein-L-isoaspar 80.3 2 4.4E-05 27.2 2.6 31 16-46 138-168 (209)
177 PRK00312 pcm protein-L-isoaspa 79.6 4.8 0.0001 25.1 4.1 33 15-47 143-175 (212)
178 PRK00517 prmA ribosomal protei 79.5 7 0.00015 25.2 4.9 35 16-50 179-216 (250)
179 COG3963 Phospholipid N-methylt 79.3 13 0.00027 23.2 6.0 42 7-48 108-157 (194)
180 TIGR00406 prmA ribosomal prote 79.0 5 0.00011 26.5 4.2 35 15-49 224-261 (288)
181 PF10369 ALS_ss_C: Small subun 78.9 4.4 9.5E-05 21.2 3.2 27 19-45 38-64 (75)
182 COG0421 SpeE Spermidine syntha 78.8 6.8 0.00015 26.0 4.7 43 4-47 138-190 (282)
183 PF01209 Ubie_methyltran: ubiE 78.3 2.8 6E-05 26.9 2.8 36 15-50 115-156 (233)
184 PF01135 PCMT: Protein-L-isoas 78.3 1.8 3.8E-05 27.3 1.9 31 16-46 141-171 (209)
185 KOG1661 Protein-L-isoaspartate 78.1 4.1 8.8E-05 26.1 3.3 31 16-46 162-192 (237)
186 PF12847 Methyltransf_18: Meth 77.2 3.4 7.5E-05 22.5 2.7 32 15-46 69-110 (112)
187 PF08704 GCD14: tRNA methyltra 76.9 3.6 7.8E-05 26.7 3.0 34 15-48 112-147 (247)
188 PRK00811 spermidine synthase; 76.7 7.9 0.00017 25.5 4.6 35 13-47 147-191 (283)
189 TIGR03840 TMPT_Se_Te thiopurin 76.3 5.5 0.00012 25.2 3.7 33 16-48 113-153 (213)
190 PRK11579 putative oxidoreducta 76.3 21 0.00045 24.1 8.5 72 14-89 62-142 (346)
191 PF01596 Methyltransf_3: O-met 76.1 7.2 0.00016 24.6 4.1 34 15-48 120-156 (205)
192 PF04016 DUF364: Domain of unk 75.8 14 0.00031 21.9 6.9 68 16-88 62-132 (147)
193 PRK00107 gidB 16S rRNA methylt 75.7 8.1 0.00017 23.9 4.2 33 15-47 111-145 (187)
194 PF08351 DUF1726: Domain of un 75.1 6.9 0.00015 21.4 3.4 39 10-48 5-46 (92)
195 PLN02366 spermidine synthase 74.5 11 0.00024 25.3 4.9 41 7-47 156-206 (308)
196 TIGR01546 GAPDH-II_archae glyc 74.3 19 0.00041 24.6 6.0 72 15-86 74-151 (333)
197 KOG1099 SAM-dependent methyltr 74.0 10 0.00022 24.9 4.3 43 3-45 101-161 (294)
198 PRK08324 short chain dehydroge 73.9 16 0.00034 27.2 6.0 35 15-49 497-559 (681)
199 PRK04207 glyceraldehyde-3-phos 73.7 8 0.00017 26.3 4.2 33 15-47 77-109 (341)
200 PRK13303 L-aspartate dehydroge 73.7 9.5 0.00021 24.9 4.4 32 15-46 60-91 (265)
201 PF13659 Methyltransf_26: Meth 73.4 5 0.00011 22.1 2.7 33 14-46 68-114 (117)
202 COG2242 CobL Precorrin-6B meth 73.0 10 0.00022 23.7 4.1 34 16-49 102-137 (187)
203 PF08241 Methyltransf_11: Meth 73.0 2.7 5.8E-05 21.9 1.5 31 15-45 59-95 (95)
204 PF13241 NAD_binding_7: Putati 72.6 13 0.00029 20.4 4.3 34 15-48 59-92 (103)
205 COG2226 UbiE Methylase involve 72.4 11 0.00023 24.5 4.3 36 15-50 118-159 (238)
206 COG0275 Predicted S-adenosylme 72.2 5.3 0.00012 26.9 2.9 22 29-50 226-247 (314)
207 KOG1540 Ubiquinone biosynthesi 72.0 5.3 0.00011 26.4 2.8 24 27-50 194-217 (296)
208 KOG4589 Cell division protein 72.0 17 0.00037 23.1 4.9 43 4-46 123-183 (232)
209 KOG4022 Dihydropteridine reduc 71.4 17 0.00037 22.6 4.7 46 4-49 59-131 (236)
210 PRK11088 rrmA 23S rRNA methylt 71.3 7.9 0.00017 25.2 3.6 32 15-47 150-181 (272)
211 PRK04266 fibrillarin; Provisio 71.0 11 0.00023 24.2 4.0 31 16-46 141-175 (226)
212 PF01202 SKI: Shikimate kinase 71.0 14 0.00031 21.8 4.5 40 7-47 53-92 (158)
213 PLN02476 O-methyltransferase 70.7 21 0.00045 23.7 5.4 33 15-47 193-228 (278)
214 COG2227 UbiG 2-polyprenyl-3-me 70.4 18 0.00038 23.6 4.9 33 15-47 123-161 (243)
215 PLN02781 Probable caffeoyl-CoA 70.1 20 0.00044 22.9 5.2 33 15-47 143-178 (234)
216 PRK04457 spermidine synthase; 70.0 21 0.00046 23.3 5.4 33 14-46 134-176 (262)
217 PF14237 DUF4339: Domain of un 69.4 8.1 0.00018 17.9 2.5 22 74-95 13-34 (45)
218 cd02440 AdoMet_MTases S-adenos 68.6 14 0.00031 18.9 4.1 32 15-46 65-103 (107)
219 TIGR00006 S-adenosyl-methyltra 68.4 6.9 0.00015 26.3 2.9 22 29-50 222-243 (305)
220 TIGR00477 tehB tellurite resis 68.2 17 0.00036 22.4 4.5 32 15-46 93-132 (195)
221 PF06962 rRNA_methylase: Putat 67.9 5.2 0.00011 23.8 2.0 22 29-50 74-95 (140)
222 COG5016 Pyruvate/oxaloacetate 67.4 18 0.00039 25.6 4.7 46 3-48 97-145 (472)
223 PRK08289 glyceraldehyde-3-phos 67.4 9.2 0.0002 27.4 3.4 36 15-50 223-261 (477)
224 PF01118 Semialdhyde_dh: Semia 67.3 13 0.00027 21.0 3.5 34 15-48 65-98 (121)
225 KOG1205 Predicted dehydrogenas 67.2 31 0.00067 23.1 5.7 37 15-51 90-153 (282)
226 PRK10206 putative oxidoreducta 67.2 36 0.00079 23.1 7.5 72 14-89 62-142 (344)
227 TIGR02752 MenG_heptapren 2-hep 67.0 12 0.00027 23.4 3.8 33 15-47 113-151 (231)
228 TIGR02853 spore_dpaA dipicolin 66.2 14 0.0003 24.5 4.0 41 15-55 208-248 (287)
229 PRK13301 putative L-aspartate 66.1 21 0.00045 23.7 4.6 34 14-47 60-93 (267)
230 PF02875 Mur_ligase_C: Mur lig 65.6 18 0.0004 19.1 3.8 34 15-48 12-49 (91)
231 PRK11207 tellurite resistance 65.2 20 0.00043 22.2 4.3 32 15-46 94-133 (197)
232 PRK08261 fabG 3-ketoacyl-(acyl 65.2 34 0.00073 23.9 5.9 34 15-48 283-343 (450)
233 PF07302 AroM: AroM protein; 64.7 22 0.00048 22.9 4.5 28 5-32 167-195 (221)
234 PRK11036 putative S-adenosyl-L 64.7 25 0.00054 22.6 4.9 34 14-47 110-149 (255)
235 TIGR03855 NAD_NadX aspartate d 63.7 25 0.00054 22.6 4.7 32 15-46 36-67 (229)
236 PF00899 ThiF: ThiF family; I 63.6 23 0.00049 20.3 4.2 32 16-47 92-123 (135)
237 PF08731 AFT: Transcription fa 63.6 11 0.00024 21.5 2.7 27 2-28 4-31 (111)
238 COG0293 FtsJ 23S rRNA methylas 63.1 24 0.00053 22.4 4.4 46 3-48 97-160 (205)
239 PRK05134 bifunctional 3-demeth 63.0 21 0.00045 22.4 4.3 34 14-47 112-151 (233)
240 PF03269 DUF268: Caenorhabditi 62.5 11 0.00024 23.2 2.7 53 20-73 84-146 (177)
241 PRK14188 bifunctional 5,10-met 62.3 8.8 0.00019 25.7 2.5 32 16-49 201-232 (296)
242 PRK12428 3-alpha-hydroxysteroi 62.0 37 0.00081 21.4 5.7 34 15-48 47-97 (241)
243 KOG0169 Phosphoinositide-speci 61.9 23 0.0005 26.9 4.7 61 23-90 312-372 (746)
244 TIGR00417 speE spermidine synt 61.8 24 0.00051 23.1 4.4 34 14-47 143-186 (270)
245 PRK11895 ilvH acetolactate syn 61.6 12 0.00026 22.7 2.8 26 19-44 120-145 (161)
246 PLN02232 ubiquinone biosynthes 61.4 11 0.00023 22.6 2.6 34 16-49 44-83 (160)
247 TIGR00518 alaDH alanine dehydr 60.8 14 0.0003 25.5 3.3 35 16-50 230-270 (370)
248 TIGR00119 acolac_sm acetolacta 60.7 13 0.00029 22.4 2.9 26 19-44 119-144 (157)
249 PLN02490 MPBQ/MSBQ methyltrans 60.6 18 0.00038 24.8 3.7 34 15-48 177-216 (340)
250 smart00859 Semialdhyde_dh Semi 60.1 29 0.00062 19.4 4.2 33 16-48 65-100 (122)
251 PRK14175 bifunctional 5,10-met 59.6 12 0.00025 25.0 2.7 33 16-50 201-233 (286)
252 PF00670 AdoHcyase_NAD: S-aden 59.4 16 0.00034 22.3 3.0 43 16-60 78-121 (162)
253 PRK09489 rsmC 16S ribosomal RN 59.3 31 0.00067 23.6 4.7 35 15-49 260-305 (342)
254 TIGR00138 gidB 16S rRNA methyl 59.2 23 0.0005 21.7 3.8 32 15-46 108-141 (181)
255 PRK01581 speE spermidine synth 59.1 41 0.0009 23.5 5.3 35 14-48 224-269 (374)
256 PLN02244 tocopherol O-methyltr 59.0 23 0.0005 24.0 4.1 34 15-48 185-224 (340)
257 PRK08287 cobalt-precorrin-6Y C 58.8 22 0.00048 21.6 3.7 33 15-47 96-131 (187)
258 PRK08300 acetaldehyde dehydrog 58.5 26 0.00056 23.7 4.2 31 15-45 69-99 (302)
259 PRK10792 bifunctional 5,10-met 58.4 11 0.00024 25.1 2.5 32 16-49 202-233 (285)
260 KOG1209 1-Acyl dihydroxyaceton 58.1 36 0.00077 22.3 4.5 51 6-56 71-147 (289)
261 PRK00050 16S rRNA m(4)C1402 me 57.9 14 0.00031 24.7 2.9 22 29-50 218-239 (296)
262 PRK14178 bifunctional 5,10-met 57.8 20 0.00044 23.9 3.5 32 16-49 195-226 (279)
263 PLN03075 nicotianamine synthas 57.7 21 0.00045 24.0 3.6 33 15-47 194-233 (296)
264 PRK11705 cyclopropane fatty ac 57.5 21 0.00046 24.7 3.8 33 15-47 227-267 (383)
265 PRK14874 aspartate-semialdehyd 56.9 26 0.00056 23.8 4.1 33 15-47 62-94 (334)
266 PLN02823 spermine synthase 56.8 38 0.00083 23.1 4.8 35 13-47 173-220 (336)
267 cd01483 E1_enzyme_family Super 56.5 29 0.00064 20.0 3.9 32 15-46 88-119 (143)
268 PRK08317 hypothetical protein; 56.5 27 0.00058 21.6 3.9 33 15-47 86-124 (241)
269 TIGR01470 cysG_Nterm siroheme 56.1 48 0.001 20.8 5.8 56 15-70 68-124 (205)
270 PF13489 Methyltransf_23: Meth 55.8 15 0.00033 21.2 2.6 34 14-47 76-115 (161)
271 cd01079 NAD_bind_m-THF_DH NAD 55.7 9.6 0.00021 24.0 1.7 40 9-50 120-159 (197)
272 TIGR03215 ac_ald_DH_ac acetald 55.6 50 0.0011 22.0 5.1 30 15-44 63-92 (285)
273 COG1432 Uncharacterized conser 55.6 47 0.001 20.5 4.8 34 14-48 108-142 (181)
274 COG2423 Predicted ornithine cy 55.6 21 0.00046 24.3 3.5 33 15-48 194-226 (330)
275 TIGR01934 MenG_MenH_UbiE ubiqu 55.4 26 0.00056 21.5 3.7 35 15-49 105-145 (223)
276 PRK07402 precorrin-6B methylas 55.2 46 0.001 20.4 4.7 21 28-48 123-143 (196)
277 TIGR00064 ftsY signal recognit 55.1 54 0.0012 21.6 5.2 78 14-91 152-247 (272)
278 PRK13255 thiopurine S-methyltr 54.2 20 0.00043 22.8 3.0 32 16-47 116-155 (218)
279 PRK14194 bifunctional 5,10-met 53.8 15 0.00033 24.7 2.6 32 16-49 202-233 (301)
280 CHL00100 ilvH acetohydroxyacid 53.8 20 0.00043 22.1 2.8 25 19-43 120-144 (174)
281 cd06167 LabA_like LabA_like pr 53.1 43 0.00094 19.3 4.9 32 15-47 98-129 (149)
282 PLN02589 caffeoyl-CoA O-methyl 52.7 49 0.0011 21.6 4.7 32 15-46 155-189 (247)
283 TIGR00288 conserved hypothetic 52.5 52 0.0011 20.1 5.3 31 14-45 103-133 (160)
284 PF01795 Methyltransf_5: MraW 52.4 9.2 0.0002 25.8 1.4 22 29-50 223-244 (310)
285 PRK06718 precorrin-2 dehydroge 52.4 56 0.0012 20.4 5.3 32 15-47 69-100 (202)
286 PLN02618 tryptophan synthase, 52.0 53 0.0011 23.2 5.0 36 5-40 228-263 (410)
287 PRK12335 tellurite resistance 51.4 29 0.00063 22.8 3.6 33 15-47 183-223 (287)
288 PLN02233 ubiquinone biosynthes 51.3 19 0.0004 23.4 2.6 34 16-49 145-184 (261)
289 COG4992 ArgD Ornithine/acetylo 51.2 51 0.0011 23.3 4.7 37 4-41 88-124 (404)
290 COG0133 TrpB Tryptophan syntha 51.2 23 0.00051 24.4 3.0 36 3-38 210-246 (396)
291 PF13847 Methyltransf_31: Meth 50.9 20 0.00043 20.9 2.5 33 15-47 72-110 (152)
292 PRK04346 tryptophan synthase s 50.9 56 0.0012 22.9 5.0 45 4-48 214-258 (397)
293 TIGR02072 BioC biotin biosynth 50.7 36 0.00077 21.1 3.8 34 15-48 97-136 (240)
294 PF01564 Spermine_synth: Sperm 50.7 28 0.0006 22.5 3.3 43 5-47 139-191 (246)
295 PRK08618 ornithine cyclodeamin 50.7 21 0.00046 24.0 2.9 33 16-50 192-224 (325)
296 TIGR01296 asd_B aspartate-semi 50.7 38 0.00082 23.1 4.1 33 15-47 60-92 (339)
297 COG0703 AroK Shikimate kinase 50.6 47 0.001 20.5 4.1 39 8-47 64-102 (172)
298 PF01408 GFO_IDH_MocA: Oxidore 50.5 42 0.00091 18.4 4.1 27 15-41 61-87 (120)
299 COG1179 Dinucleotide-utilizing 50.2 41 0.00089 22.2 3.9 34 9-42 114-147 (263)
300 PRK15128 23S rRNA m(5)C1962 me 49.6 59 0.0013 22.8 5.0 20 31-50 323-342 (396)
301 PF02608 Bmp: Basic membrane p 49.6 76 0.0016 21.1 5.9 66 14-88 186-254 (306)
302 TIGR00563 rsmB ribosomal RNA s 49.5 45 0.00097 23.4 4.4 20 29-48 350-369 (426)
303 PRK00121 trmB tRNA (guanine-N( 49.5 53 0.0011 20.4 4.4 20 28-47 137-156 (202)
304 PRK14189 bifunctional 5,10-met 49.2 17 0.00037 24.3 2.2 32 16-49 201-232 (285)
305 PRK05562 precorrin-2 dehydroge 49.2 70 0.0015 20.6 6.0 56 15-71 84-141 (223)
306 PRK12771 putative glutamate sy 49.0 1.9 4.1E-05 31.1 -2.4 14 15-28 221-234 (564)
307 PRK13304 L-aspartate dehydroge 48.6 60 0.0013 21.2 4.7 31 15-45 60-90 (265)
308 PF13407 Peripla_BP_4: Peripla 48.6 37 0.00081 21.3 3.7 44 3-46 42-85 (257)
309 PRK14179 bifunctional 5,10-met 48.4 18 0.00039 24.2 2.2 32 16-49 201-232 (284)
310 KOG0538 Glycolate oxidase [Ene 48.4 51 0.0011 22.6 4.2 40 7-48 269-308 (363)
311 PF11017 DUF2855: Protein of u 48.1 67 0.0015 21.9 4.9 44 7-50 190-234 (314)
312 TIGR00036 dapB dihydrodipicoli 47.8 43 0.00092 21.9 3.9 34 15-49 67-100 (266)
313 cd05212 NAD_bind_m-THF_DH_Cycl 47.7 22 0.00047 21.0 2.3 33 16-50 71-103 (140)
314 PRK06128 oxidoreductase; Provi 47.5 79 0.0017 20.7 5.7 34 15-48 133-192 (300)
315 cd03328 MR_like_3 Mandelate ra 47.4 47 0.001 22.7 4.2 36 4-40 170-205 (352)
316 COG2521 Predicted archaeal met 47.4 65 0.0014 21.3 4.5 47 4-50 193-249 (287)
317 KOG3674 FtsJ-like RNA methyltr 47.0 16 0.00034 26.6 1.9 29 17-45 232-272 (696)
318 TIGR00091 tRNA (guanine-N(7)-) 46.9 67 0.0014 19.7 5.1 32 16-47 87-132 (194)
319 TIGR01334 modD putative molybd 46.0 89 0.0019 20.9 5.6 32 7-38 199-230 (277)
320 TIGR02716 C20_methyl_CrtF C-20 45.9 24 0.00053 23.3 2.6 20 29-48 236-255 (306)
321 cd08591 PI-PLCc_beta Catalytic 45.9 42 0.00092 22.1 3.6 58 27-89 29-86 (257)
322 PRK15068 tRNA mo(5)U34 methylt 45.6 46 0.00099 22.5 3.9 32 15-46 188-225 (322)
323 PTZ00146 fibrillarin; Provisio 45.5 45 0.00097 22.5 3.7 31 16-46 202-236 (293)
324 cd00755 YgdL_like Family of ac 45.5 75 0.0016 20.5 4.7 28 14-41 100-127 (231)
325 PRK05848 nicotinate-nucleotide 45.3 90 0.002 20.8 5.2 29 18-47 229-257 (273)
326 PRK13352 thiamine biosynthesis 45.3 49 0.0011 23.5 4.0 43 1-46 141-183 (431)
327 PRK13028 tryptophan synthase s 45.2 83 0.0018 22.2 5.1 33 6-38 220-252 (402)
328 PRK13302 putative L-aspartate 45.2 54 0.0012 21.5 4.1 31 16-46 67-97 (271)
329 COG4948 L-alanine-DL-glutamate 45.1 48 0.001 22.7 4.0 36 4-40 176-211 (372)
330 PF14258 DUF4350: Domain of un 45.1 41 0.0009 16.8 3.0 20 28-47 51-70 (70)
331 PRK14904 16S rRNA methyltransf 45.1 64 0.0014 22.8 4.6 21 29-49 359-379 (445)
332 TIGR00190 thiC thiamine biosyn 45.0 52 0.0011 23.3 4.0 42 2-46 139-180 (423)
333 TIGR00308 TRM1 tRNA(guanine-26 44.7 92 0.002 21.7 5.2 33 15-47 113-147 (374)
334 PF10672 Methyltrans_SAM: S-ad 44.6 38 0.00081 22.7 3.3 75 4-79 182-273 (286)
335 PRK04452 acetyl-CoA decarbonyl 44.6 68 0.0015 21.9 4.5 25 16-40 124-152 (319)
336 PTZ00098 phosphoethanolamine N 44.4 27 0.0006 22.7 2.6 34 15-48 116-157 (263)
337 PRK10258 biotin biosynthesis p 44.2 59 0.0013 20.7 4.1 34 15-48 102-141 (251)
338 PRK11783 rlmL 23S rRNA m(2)G24 44.1 1.4E+02 0.0031 22.7 7.3 21 29-49 638-658 (702)
339 COG4091 Predicted homoserine d 44.0 75 0.0016 22.4 4.6 70 14-86 99-175 (438)
340 PF02882 THF_DHG_CYH_C: Tetrah 43.9 19 0.00042 21.8 1.7 33 15-49 78-110 (160)
341 PRK00216 ubiE ubiquinone/menaq 43.8 55 0.0012 20.3 3.9 33 16-48 121-159 (239)
342 PRK07502 cyclohexadienyl dehyd 43.7 41 0.00089 22.3 3.4 34 15-48 65-101 (307)
343 PF05148 Methyltransf_8: Hypot 43.5 28 0.0006 22.4 2.4 35 15-49 121-160 (219)
344 COG0616 SppA Periplasmic serin 43.4 1E+02 0.0022 20.9 6.4 79 4-82 84-178 (317)
345 PRK10637 cysG siroheme synthas 43.4 1.2E+02 0.0026 21.6 5.8 57 15-71 71-128 (457)
346 cd01487 E1_ThiF_like E1_ThiF_l 43.2 46 0.00099 20.3 3.3 32 16-47 88-120 (174)
347 PF01728 FtsJ: FtsJ-like methy 43.1 34 0.00073 20.6 2.8 18 30-47 122-139 (181)
348 PLN02396 hexaprenyldihydroxybe 43.0 46 0.001 22.6 3.6 33 15-47 197-235 (322)
349 TIGR00537 hemK_rel_arch HemK-r 42.7 28 0.0006 21.0 2.3 18 30-47 123-140 (179)
350 PRK14176 bifunctional 5,10-met 42.6 26 0.00056 23.5 2.3 33 15-49 206-238 (287)
351 TIGR02356 adenyl_thiF thiazole 42.4 49 0.0011 20.6 3.4 30 15-44 110-139 (202)
352 PRK14185 bifunctional 5,10-met 42.4 25 0.00054 23.6 2.2 32 16-49 204-235 (293)
353 PRK08594 enoyl-(acyl carrier p 42.1 91 0.002 19.9 5.8 16 33-48 133-148 (257)
354 PF01234 NNMT_PNMT_TEMT: NNMT/ 41.9 16 0.00034 24.0 1.2 22 29-50 181-202 (256)
355 PRK05447 1-deoxy-D-xylulose 5- 41.9 73 0.0016 22.4 4.4 31 15-45 90-120 (385)
356 PRK08328 hypothetical protein; 41.6 49 0.0011 21.2 3.4 14 16-29 118-131 (231)
357 PRK13256 thiopurine S-methyltr 41.5 55 0.0012 21.1 3.6 33 16-48 124-164 (226)
358 COG0422 ThiC Thiamine biosynth 41.5 1.2E+02 0.0027 21.4 5.3 42 2-46 140-181 (432)
359 COG0161 BioA Adenosylmethionin 41.4 86 0.0019 22.6 4.7 36 3-38 90-126 (449)
360 PRK14192 bifunctional 5,10-met 41.1 31 0.00066 23.0 2.5 33 15-49 201-233 (283)
361 PRK15116 sulfur acceptor prote 40.9 90 0.0019 20.7 4.6 28 14-41 119-146 (268)
362 KOG1663 O-methyltransferase [S 40.8 94 0.002 20.3 4.5 33 15-47 148-183 (237)
363 PRK05993 short chain dehydroge 40.8 98 0.0021 19.9 5.1 19 8-26 68-86 (277)
364 cd03327 MR_like_2 Mandelate ra 40.7 66 0.0014 21.8 4.1 35 5-40 160-194 (341)
365 PRK14180 bifunctional 5,10-met 40.3 27 0.00058 23.3 2.1 33 15-49 200-232 (282)
366 PF01972 SDH_sah: Serine dehyd 40.0 1.2E+02 0.0025 20.5 5.0 37 3-39 78-116 (285)
367 PRK15072 bifunctional D-altron 39.9 61 0.0013 22.6 3.9 36 4-40 194-229 (404)
368 PRK14167 bifunctional 5,10-met 39.9 27 0.00058 23.5 2.0 32 16-49 204-235 (297)
369 COG1419 FlhF Flagellar GTP-bin 39.8 1.4E+02 0.003 21.3 6.2 30 62-91 335-368 (407)
370 PF08242 Methyltransf_12: Meth 39.7 15 0.00033 19.5 0.8 29 15-43 65-99 (99)
371 PRK03612 spermidine synthase; 38.9 1E+02 0.0022 22.5 4.9 34 14-47 371-415 (521)
372 cd03329 MR_like_4 Mandelate ra 38.9 70 0.0015 21.9 4.0 35 5-40 178-212 (368)
373 TIGR00959 ffh signal recogniti 38.8 1.4E+02 0.003 21.3 5.4 35 14-48 180-222 (428)
374 PLN02775 Probable dihydrodipic 38.8 99 0.0022 20.8 4.5 42 8-50 71-113 (286)
375 cd00757 ThiF_MoeB_HesA_family 38.7 56 0.0012 20.7 3.4 26 16-41 111-136 (228)
376 COG0157 NadC Nicotinate-nucleo 38.5 1.2E+02 0.0027 20.3 5.5 29 18-47 234-262 (280)
377 COG1879 RbsB ABC-type sugar tr 38.4 1E+02 0.0022 20.3 4.7 42 5-46 80-121 (322)
378 PF07942 N2227: N2227-like pro 38.3 44 0.00096 22.2 2.9 33 16-48 165-203 (270)
379 cd03316 MR_like Mandelate race 38.3 75 0.0016 21.5 4.1 36 4-40 177-212 (357)
380 PRK06349 homoserine dehydrogen 38.3 1.2E+02 0.0027 21.4 5.2 31 14-44 70-101 (426)
381 PF06859 Bin3: Bicoid-interact 38.3 25 0.00054 20.0 1.5 18 29-46 26-43 (110)
382 PRK08644 thiamine biosynthesis 38.3 60 0.0013 20.5 3.4 31 16-46 117-148 (212)
383 PRK14172 bifunctional 5,10-met 38.3 34 0.00074 22.8 2.3 33 16-50 201-233 (278)
384 PRK05690 molybdopterin biosynt 38.3 64 0.0014 20.9 3.6 30 16-45 122-151 (245)
385 TIGR02355 moeB molybdopterin s 37.7 59 0.0013 21.0 3.3 28 15-42 113-140 (240)
386 PRK08374 homoserine dehydrogen 37.4 73 0.0016 21.7 3.9 30 15-44 90-119 (336)
387 PRK00436 argC N-acetyl-gamma-g 37.3 95 0.0021 21.2 4.4 34 15-48 67-100 (343)
388 PF06414 Zeta_toxin: Zeta toxi 37.2 1E+02 0.0022 19.0 4.7 40 5-44 81-122 (199)
389 KOG3923 D-aspartate oxidase [A 37.0 33 0.00072 23.4 2.1 39 11-49 178-217 (342)
390 PRK14177 bifunctional 5,10-met 37.0 37 0.00079 22.7 2.3 33 15-49 201-233 (284)
391 cd03320 OSBS o-Succinylbenzoat 36.9 87 0.0019 20.3 4.1 35 5-40 116-150 (263)
392 PLN02336 phosphoethanolamine N 36.8 71 0.0015 22.6 3.9 32 16-47 332-369 (475)
393 PF00202 Aminotran_3: Aminotra 36.8 78 0.0017 21.4 3.9 36 3-38 62-97 (339)
394 cd00308 enolase_like Enolase-s 36.7 93 0.002 19.6 4.1 36 4-40 82-117 (229)
395 TIGR01927 menC_gamma/gm+ o-suc 36.7 83 0.0018 21.1 4.0 35 4-39 142-176 (307)
396 PRK15451 tRNA cmo(5)U34 methyl 36.5 44 0.00095 21.4 2.6 21 28-48 145-165 (247)
397 smart00828 PKS_MT Methyltransf 36.3 51 0.0011 20.5 2.9 33 16-48 67-105 (224)
398 PF00448 SRP54: SRP54-type pro 36.2 42 0.00091 20.9 2.4 83 9-91 76-170 (196)
399 PRK15440 L-rhamnonate dehydrat 36.0 86 0.0019 21.9 4.1 35 5-40 197-231 (394)
400 TIGR00446 nop2p NOL1/NOP2/sun 35.8 50 0.0011 21.5 2.8 20 29-48 181-200 (264)
401 PRK14968 putative methyltransf 35.5 50 0.0011 19.7 2.7 18 29-46 130-147 (188)
402 PRK14184 bifunctional 5,10-met 35.4 38 0.00083 22.7 2.2 33 16-50 204-236 (286)
403 PLN02730 enoyl-[acyl-carrier-p 35.3 1.4E+02 0.003 20.0 5.5 17 32-48 163-179 (303)
404 cd06300 PBP1_ABC_sugar_binding 35.1 1.2E+02 0.0026 19.2 5.2 43 5-47 49-92 (272)
405 cd03315 MLE_like Muconate lact 35.1 94 0.002 20.1 4.0 34 4-38 117-150 (265)
406 cd03325 D-galactonate_dehydrat 34.8 93 0.002 21.2 4.1 35 5-40 165-199 (352)
407 cd01080 NAD_bind_m-THF_DH_Cycl 34.5 45 0.00097 20.3 2.3 33 16-50 87-119 (168)
408 TIGR01983 UbiG ubiquinone bios 34.3 68 0.0015 19.9 3.2 33 15-47 111-149 (224)
409 PRK14103 trans-aconitate 2-met 34.0 49 0.0011 21.2 2.6 32 15-46 88-125 (255)
410 PRK00048 dihydrodipicolinate r 33.9 67 0.0014 20.9 3.2 32 16-48 60-91 (257)
411 PRK05786 fabG 3-ketoacyl-(acyl 33.8 1.2E+02 0.0026 18.8 6.2 35 15-49 80-137 (238)
412 PRK06823 ornithine cyclodeamin 33.7 52 0.0011 22.2 2.7 35 15-50 191-225 (315)
413 PRK07806 short chain dehydroge 33.7 1.2E+02 0.0026 18.9 6.1 34 15-48 83-135 (248)
414 cd03321 mandelate_racemase Man 33.6 96 0.0021 21.2 4.0 36 4-40 174-209 (355)
415 PF09363 XFP_C: XFP C-terminal 33.4 52 0.0011 20.9 2.5 26 15-40 33-60 (203)
416 PRK07269 cystathionine gamma-s 33.3 1.6E+02 0.0035 20.2 5.4 41 4-46 58-98 (364)
417 PRK06719 precorrin-2 dehydroge 33.0 1.1E+02 0.0024 18.3 5.7 31 15-46 69-99 (157)
418 PLN02897 tetrahydrofolate dehy 33.0 40 0.00087 23.2 2.1 32 16-49 257-288 (345)
419 PRK07482 hypothetical protein; 32.9 1.8E+02 0.004 20.7 6.0 35 4-38 98-132 (461)
420 COG4566 TtrR Response regulato 32.8 1.3E+02 0.0029 19.1 4.6 84 4-90 15-101 (202)
421 PRK14169 bifunctional 5,10-met 32.7 42 0.00091 22.4 2.1 33 16-50 199-231 (282)
422 PRK02901 O-succinylbenzoate sy 32.7 1.1E+02 0.0024 20.9 4.1 34 5-39 123-156 (327)
423 KOG2017 Molybdopterin synthase 32.6 1.1E+02 0.0023 21.6 4.0 34 15-48 155-201 (427)
424 PRK10812 putative DNAse; Provi 32.3 1.5E+02 0.0032 19.5 5.2 45 7-51 24-69 (265)
425 cd03326 MR_like_1 Mandelate ra 32.3 1.1E+02 0.0024 21.3 4.1 35 5-40 194-228 (385)
426 PRK13656 trans-2-enoyl-CoA red 32.2 1.4E+02 0.0031 21.2 4.6 22 5-27 121-142 (398)
427 PRK15408 autoinducer 2-binding 32.2 1.6E+02 0.0035 19.9 5.4 41 7-47 71-112 (336)
428 PRK14166 bifunctional 5,10-met 32.1 44 0.00095 22.4 2.1 32 16-49 200-231 (282)
429 COG0289 DapB Dihydrodipicolina 31.9 98 0.0021 20.6 3.6 34 15-49 68-101 (266)
430 KOG1610 Corticosteroid 11-beta 31.8 1.7E+02 0.0038 20.1 5.6 49 3-51 92-168 (322)
431 COG4798 Predicted methyltransf 31.7 60 0.0013 20.9 2.5 19 29-47 148-166 (238)
432 PF13466 STAS_2: STAS domain 31.5 78 0.0017 16.0 5.3 47 3-49 13-67 (80)
433 PRK12581 oxaloacetate decarbox 31.5 1.2E+02 0.0026 22.0 4.3 45 3-47 104-151 (468)
434 cd03324 rTSbeta_L-fuconate_deh 31.5 1.1E+02 0.0023 21.6 4.0 34 5-39 229-262 (415)
435 TIGR00740 methyltransferase, p 31.4 56 0.0012 20.7 2.5 19 29-47 143-161 (239)
436 PF02084 Bindin: Bindin; Inte 31.2 94 0.002 20.2 3.3 39 3-42 103-142 (238)
437 PRK07819 3-hydroxybutyryl-CoA 31.2 1.2E+02 0.0025 20.1 4.0 18 15-32 83-100 (286)
438 PRK10867 signal recognition pa 31.2 1.5E+02 0.0033 21.2 4.7 34 14-47 181-222 (433)
439 cd08598 PI-PLC1c_yeast Catalyt 30.8 99 0.0022 20.1 3.5 24 28-51 30-53 (231)
440 TIGR01850 argC N-acetyl-gamma- 30.7 1.3E+02 0.0027 20.7 4.2 33 16-48 68-100 (346)
441 PF05175 MTS: Methyltransferas 30.6 37 0.0008 20.4 1.5 35 15-49 97-142 (170)
442 PRK01683 trans-aconitate 2-met 30.6 54 0.0012 21.0 2.3 33 15-47 92-130 (258)
443 PF12471 GTP_CH_N: GTP cyclohy 30.4 85 0.0019 19.7 3.0 33 61-93 115-150 (194)
444 COG3199 Predicted inorganic po 30.4 1.4E+02 0.0029 20.9 4.2 35 2-37 86-120 (355)
445 PF02153 PDH: Prephenate dehyd 30.3 1.3E+02 0.0027 19.6 4.0 32 16-48 45-80 (258)
446 TIGR02534 mucon_cyclo muconate 30.3 1.2E+02 0.0026 20.8 4.1 35 4-39 175-209 (368)
447 TIGR03884 sel_bind_Methan sele 30.3 86 0.0019 16.5 2.6 21 2-22 27-48 (74)
448 PRK11933 yebU rRNA (cytosine-C 30.3 48 0.001 23.8 2.2 20 29-48 224-243 (470)
449 COG0769 MurE UDP-N-acetylmuram 30.2 2.2E+02 0.0047 20.7 7.8 74 16-89 332-414 (475)
450 cd01492 Aos1_SUMO Ubiquitin ac 30.1 1E+02 0.0022 19.2 3.5 33 15-47 109-141 (197)
451 PRK07109 short chain dehydroge 30.1 1.8E+02 0.0038 19.6 5.4 12 15-26 84-95 (334)
452 PRK13803 bifunctional phosphor 29.9 1.6E+02 0.0035 22.0 4.8 33 6-38 428-460 (610)
453 COG2813 RsmC 16S RNA G1207 met 29.9 1.5E+02 0.0032 20.2 4.2 36 15-50 36-76 (300)
454 PRK14191 bifunctional 5,10-met 29.8 46 0.00099 22.3 1.9 32 16-49 200-231 (285)
455 PRK10481 hypothetical protein; 29.8 1.6E+02 0.0034 19.0 4.6 33 16-48 153-190 (224)
456 PF09651 Cas_APE2256: CRISPR-a 29.8 1.1E+02 0.0024 17.8 3.4 24 14-37 89-112 (136)
457 PRK12747 short chain dehydroge 29.8 1.5E+02 0.0032 18.6 5.7 35 15-49 87-146 (252)
458 PF13649 Methyltransf_25: Meth 29.6 37 0.00079 18.2 1.3 13 29-41 89-101 (101)
459 COG1597 LCB5 Sphingosine kinas 29.6 1.3E+02 0.0028 20.2 4.0 38 5-43 47-84 (301)
460 TIGR02886 spore_II_AA anti-sig 29.5 86 0.0019 16.9 2.8 46 4-49 25-80 (106)
461 PRK02714 O-succinylbenzoate sy 29.5 1.3E+02 0.0029 20.2 4.1 33 5-38 152-184 (320)
462 PRK14186 bifunctional 5,10-met 29.3 55 0.0012 22.1 2.2 33 16-50 201-233 (297)
463 PRK06182 short chain dehydroge 29.2 1.6E+02 0.0034 18.8 5.5 12 15-26 73-84 (273)
464 PLN02616 tetrahydrofolate dehy 29.1 48 0.001 23.1 2.0 33 15-49 273-305 (364)
465 COG0144 Sun tRNA and rRNA cyto 29.0 54 0.0012 22.6 2.2 21 29-49 270-290 (355)
466 PF00731 AIRC: AIR carboxylase 29.0 1.3E+02 0.0028 18.1 3.6 24 15-38 54-77 (150)
467 cd03318 MLE Muconate Lactonizi 29.0 1.3E+02 0.0029 20.5 4.1 34 5-39 177-210 (365)
468 COG0541 Ffh Signal recognition 28.9 2.3E+02 0.0049 20.6 5.2 35 14-48 180-222 (451)
469 COG1444 Predicted P-loop ATPas 28.9 1.4E+02 0.003 23.2 4.3 42 8-49 84-128 (758)
470 PLN02516 methylenetetrahydrofo 28.7 61 0.0013 21.9 2.4 34 15-50 209-242 (299)
471 TIGR00452 methyltransferase, p 28.4 63 0.0014 21.9 2.4 31 16-46 188-224 (314)
472 PRK14183 bifunctional 5,10-met 28.4 55 0.0012 21.9 2.1 32 16-49 200-231 (281)
473 cd03322 rpsA The starvation se 28.4 1.3E+02 0.0027 20.7 3.9 36 4-40 151-186 (361)
474 KOG1264 Phospholipase C [Lipid 28.2 1.8E+02 0.0038 23.2 4.7 55 28-89 337-391 (1267)
475 PF09670 Cas_Cas02710: CRISPR- 28.2 1.9E+02 0.0042 20.1 4.8 33 15-47 69-103 (379)
476 PRK14170 bifunctional 5,10-met 28.1 57 0.0012 21.8 2.1 33 16-50 200-232 (284)
477 TIGR02354 thiF_fam2 thiamine b 28.1 1.2E+02 0.0027 18.9 3.5 13 16-28 110-122 (200)
478 PRK12742 oxidoreductase; Provi 27.9 1.5E+02 0.0033 18.2 6.3 12 15-26 74-85 (237)
479 cd05213 NAD_bind_Glutamyl_tRNA 27.9 1.2E+02 0.0026 20.3 3.7 14 16-29 238-251 (311)
480 PRK14193 bifunctional 5,10-met 27.8 55 0.0012 21.9 2.0 33 16-50 203-235 (284)
481 KOG1395 Tryptophan synthase be 27.8 90 0.002 22.0 3.0 22 7-28 282-303 (477)
482 COG0623 FabI Enoyl-[acyl-carri 27.7 1.8E+02 0.0038 19.3 4.2 37 4-40 43-81 (259)
483 PRK14121 tRNA (guanine-N(7)-)- 27.6 2E+02 0.0043 20.4 4.7 34 14-47 190-235 (390)
484 PRK14171 bifunctional 5,10-met 27.6 62 0.0013 21.7 2.2 33 16-50 202-234 (288)
485 PRK05965 hypothetical protein; 27.5 1.8E+02 0.0039 20.7 4.6 36 4-39 94-129 (459)
486 PRK09016 quinolinate phosphori 27.5 2E+02 0.0044 19.5 5.3 24 15-38 227-250 (296)
487 cd08594 PI-PLCc_eta Catalytic 27.5 1.5E+02 0.0033 19.2 3.9 24 28-51 30-53 (227)
488 PRK07986 adenosylmethionine--8 27.5 1.9E+02 0.0042 20.4 4.7 36 4-39 90-125 (428)
489 PRK14173 bifunctional 5,10-met 27.4 59 0.0013 21.8 2.1 33 16-50 198-230 (287)
490 TIGR00978 asd_EA aspartate-sem 27.0 1.5E+02 0.0032 20.2 4.0 34 15-48 72-105 (341)
491 PRK08762 molybdopterin biosynt 27.0 1.1E+02 0.0023 21.2 3.4 26 16-41 225-250 (376)
492 PRK05597 molybdopterin biosynt 27.0 1.1E+02 0.0023 21.1 3.4 28 15-42 117-144 (355)
493 PRK14168 bifunctional 5,10-met 26.9 62 0.0013 21.9 2.1 33 15-49 207-239 (297)
494 PRK07896 nicotinate-nucleotide 26.8 2.1E+02 0.0045 19.3 5.1 24 13-37 216-240 (289)
495 PF11079 YqhG: Bacterial prote 26.8 1.5E+02 0.0033 19.7 3.8 68 23-91 82-166 (260)
496 PRK14022 UDP-N-acetylmuramoyla 26.6 2.3E+02 0.0051 20.2 5.1 35 16-50 339-376 (481)
497 PRK14901 16S rRNA methyltransf 26.6 82 0.0018 22.2 2.8 20 29-48 366-385 (434)
498 PRK07878 molybdopterin biosynt 26.6 1.1E+02 0.0024 21.4 3.4 14 16-29 132-145 (392)
499 PRK00625 shikimate kinase; Pro 26.6 1.1E+02 0.0023 18.7 3.0 31 18-48 74-104 (173)
500 cd00530 PTE Phosphotriesterase 26.2 1.9E+02 0.0042 18.8 4.8 46 5-50 34-83 (293)
No 1
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=99.78 E-value=5.5e-19 Score=114.81 Aligned_cols=102 Identities=25% Similarity=0.376 Sum_probs=89.3
Q ss_pred HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhh-hhcCeEEEEeecc----CCCHH
Q 040104 4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA-AAREVDVVGVFRY----KNTWP 78 (105)
Q Consensus 4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~i~~~~~~----~~~~~ 78 (105)
++.+.++++|++|+|++|||+|+..++.++++++.++|+.+++|++.....++++.+ +..+.+++|++.. +.+++
T Consensus 242 ~vv~~i~~~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~~~~~~i~~~~~~lv~gr~~~Gs~~G~~~p~~diP 321 (366)
T COG1062 242 DVVEAIVELTDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVAGAGQEISTRPFQLVTGRVWKGSAFGGARPRSDIP 321 (366)
T ss_pred hHHHHHHHhcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecCCCCceeecChHHeeccceEEEEeecCCccccchh
Confidence 578899999988999999999999999999999999999999999775555555443 3345889999875 78999
Q ss_pred HHHHHHHcCCCCCCCceeeeeeCCCCC
Q 040104 79 LCLEFLRSGKIDIKPLVTHRFGFSQKE 105 (105)
Q Consensus 79 ~~~~~v~~g~i~~~~~i~~~~~l~~~~ 105 (105)
++++++.+|+++++++|+++|||+|+|
T Consensus 322 ~lv~~y~~Gkl~~d~lvt~~~~Le~IN 348 (366)
T COG1062 322 RLVDLYMAGKLPLDRLVTHTIPLEDIN 348 (366)
T ss_pred HHHHHHHcCCCchhHHhhccccHHHHH
Confidence 999999999999999999999999875
No 2
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.75 E-value=1.5e-17 Score=107.57 Aligned_cols=102 Identities=47% Similarity=0.864 Sum_probs=91.7
Q ss_pred hHHHHHHHHHcC-CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHH
Q 040104 3 AEEVEKIDKAMG-TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLC 80 (105)
Q Consensus 3 ~~~~~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~ 80 (105)
+++.+.++...+ ..+|+.|||+|....++.++..++.+|+++++|.-....+|++.....+++++.|++.+ ..+|+.+
T Consensus 228 ~~~~~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~vlvg~g~~~~~fpi~~v~~kE~~~~g~fry~~~~y~~a 307 (354)
T KOG0024|consen 228 QELAELVEKALGKKQPDVTFDCSGAEVTIRAAIKATRSGGTVVLVGMGAEEIQFPIIDVALKEVDLRGSFRYCNGDYPTA 307 (354)
T ss_pred HHHHHHHHhhccccCCCeEEEccCchHHHHHHHHHhccCCEEEEeccCCCccccChhhhhhheeeeeeeeeeccccHHHH
Confidence 455556665555 47999999999999999999999999999999987778899999999999999999999 7799999
Q ss_pred HHHHHcCCCCCCCceeeeeeCCCC
Q 040104 81 LEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 81 ~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
++++++|+++++++||++|+++++
T Consensus 308 i~li~sGki~~k~lIT~r~~~~~~ 331 (354)
T KOG0024|consen 308 IELVSSGKIDVKPLITHRYKFDDA 331 (354)
T ss_pred HHHHHcCCcCchhheecccccchH
Confidence 999999999999999999999875
No 3
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=99.70 E-value=5.4e-17 Score=106.10 Aligned_cols=91 Identities=19% Similarity=0.293 Sum_probs=80.3
Q ss_pred CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHHHHHHcCCCCCC
Q 040104 14 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRSGKIDIK 92 (105)
Q Consensus 14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~g~i~~~ 92 (105)
+.++|++|||+|++.+++.++++++++|+++.+|.+..+..+++..++.+++++.++..+ +++++++++++++|+++++
T Consensus 198 ~~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~g~i~~~ 277 (308)
T TIGR01202 198 RRDYRAIYDASGDPSLIDTLVRRLAKGGEIVLAGFYTEPVNFDFVPAFMKEARLRIAAEWQPGDLHAVRELIESGALSLD 277 (308)
T ss_pred CCCCCEEEECCCCHHHHHHHHHhhhcCcEEEEEeecCCCcccccchhhhcceEEEEecccchhHHHHHHHHHHcCCCChh
Confidence 357999999999987789999999999999999987655667777778899999988776 6789999999999999988
Q ss_pred CceeeeeeCCCC
Q 040104 93 PLVTHRFGFSQK 104 (105)
Q Consensus 93 ~~i~~~~~l~~~ 104 (105)
++++++|||+|+
T Consensus 278 ~~it~~~~l~~~ 289 (308)
T TIGR01202 278 GLITHQRPASDA 289 (308)
T ss_pred hccceeecHHHH
Confidence 899999999875
No 4
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=99.69 E-value=1.5e-16 Score=105.68 Aligned_cols=101 Identities=31% Similarity=0.497 Sum_probs=88.4
Q ss_pred HHHHHHHHHcC-CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCc-cccchhhhhcCeEEEEeec-c-CCCHHH
Q 040104 4 EEVEKIDKAMG-TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEM-TVPLTPAAAREVDVVGVFR-Y-KNTWPL 79 (105)
Q Consensus 4 ~~~~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~-~~~~~~~~~~~~~i~~~~~-~-~~~~~~ 79 (105)
+..+++++.++ .|+|++|||+|.+.++.+++++++++|+++++|.+.... .++...++.+++++.|++. . +.++++
T Consensus 225 ~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~~~~~~~~~~~~kel~l~gs~~~~~~~~~~~ 304 (350)
T COG1063 225 DAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGGEDIPLPAGLVVSKELTLRGSLRPSGREDFER 304 (350)
T ss_pred cHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccCCccCccCHHHHHhcccEEEeccCCCCcccHHH
Confidence 45567778884 599999999999999999999999999999999987655 5777788999999999976 3 679999
Q ss_pred HHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 80 CLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 80 ~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
+++++++|+++++++++++++++|+
T Consensus 305 ~~~ll~~g~i~~~~lit~~~~~~~~ 329 (350)
T COG1063 305 ALDLLASGKIDPEKLITHRLPLDDA 329 (350)
T ss_pred HHHHHHcCCCChhHceEeeccHHHH
Confidence 9999999999999999999998763
No 5
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=99.69 E-value=1.5e-16 Score=102.78 Aligned_cols=99 Identities=20% Similarity=0.371 Sum_probs=83.7
Q ss_pred HHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC--CCccccchhhhhcCeEEEEeecc-CCCHHHHH
Q 040104 6 VEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH--HEMTVPLTPAAAREVDVVGVFRY-KNTWPLCL 81 (105)
Q Consensus 6 ~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~--~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~ 81 (105)
.+.+++.+ +.++|++||++|.+..+..++++++++|+++.+|... .+.+++...++.+++++.|++.+ ..++++++
T Consensus 176 ~~~~~~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~i~~~~~~~~~~~i~g~~~~~~~~~~~~~ 255 (280)
T TIGR03366 176 AERQGGLQNGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPGGPVALDPEQVVRRWLTIRGVHNYEPRHLDQAV 255 (280)
T ss_pred HHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCCCceeeCHHHHHhCCcEEEecCCCCHHHHHHHH
Confidence 34566666 4689999999999888999999999999999999643 34567777888999999999876 67899999
Q ss_pred HHHHc--CCCCCCCceeeeeeCCCC
Q 040104 82 EFLRS--GKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 82 ~~v~~--g~i~~~~~i~~~~~l~~~ 104 (105)
+++.+ ++++++++|+++|||+|+
T Consensus 256 ~~l~~~~~~~~~~~~it~~~~l~~~ 280 (280)
T TIGR03366 256 RFLAANGQRFPFEELVGKPFPLADV 280 (280)
T ss_pred HHHHhhCCCCCHHHHhhcccccccC
Confidence 99998 477778899999999985
No 6
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.68 E-value=2e-16 Score=102.11 Aligned_cols=101 Identities=24% Similarity=0.346 Sum_probs=87.8
Q ss_pred HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcC-CEEEEEcCCCCCccccchhh-hhcCeEEEEeecc----CCCHH
Q 040104 5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHHEMTVPLTPA-AAREVDVVGVFRY----KNTWP 78 (105)
Q Consensus 5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~-~~~~~~i~~~~~~----~~~~~ 78 (105)
+.+.++|+|++|+|+.|||+|+..++.+++.++++| |+-+++|+......+.+.++ +.+++++.|+... +.+++
T Consensus 251 i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~l~~GR~~~Gs~FGG~K~~~~iP 330 (375)
T KOG0022|consen 251 IQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQEISTRPFQLVTGRTWKGSAFGGFKSKSDIP 330 (375)
T ss_pred HHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcccccchhhhccccEEEEEecccccchhhhh
Confidence 567899999999999999999999999999999999 99999999776555555544 4567788877654 78999
Q ss_pred HHHHHHHcCCCCCCCceeeeeeCCCCC
Q 040104 79 LCLEFLRSGKIDIKPLVTHRFGFSQKE 105 (105)
Q Consensus 79 ~~~~~v~~g~i~~~~~i~~~~~l~~~~ 105 (105)
.+++.+.++++.++++|||++||++++
T Consensus 331 ~lV~~y~~~~l~ld~~ITh~l~f~~In 357 (375)
T KOG0022|consen 331 KLVKDYMKKKLNLDEFITHELPFEEIN 357 (375)
T ss_pred HHHHHHHhCccchhhhhhcccCHHHHH
Confidence 999999999999999999999999874
No 7
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=99.67 E-value=4.7e-16 Score=103.83 Aligned_cols=102 Identities=27% Similarity=0.484 Sum_probs=86.2
Q ss_pred hHHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC--CccccchhhhhcCeEEEEeecc----CCC
Q 040104 3 AEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH--EMTVPLTPAAAREVDVVGVFRY----KNT 76 (105)
Q Consensus 3 ~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~----~~~ 76 (105)
+++.+++++.+++++|++|||+|.+..+..++++++++|+++.+|.... ...++...++.+++++.|++.. +.+
T Consensus 246 ~~~~~~i~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~ 325 (371)
T cd08281 246 PNAVEQVRELTGGGVDYAFEMAGSVPALETAYEITRRGGTTVTAGLPDPEARLSVPALSLVAEERTLKGSYMGSCVPRRD 325 (371)
T ss_pred hhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEccCCCCceeeecHHHHhhcCCEEEEEecCCCChHHH
Confidence 3566778888755899999999988779999999999999999997543 3456666778899999998764 467
Q ss_pred HHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 77 WPLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 77 ~~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
+.++++++++|+++++++|+++|||+|+
T Consensus 326 ~~~~~~l~~~g~i~~~~~i~~~~~l~~~ 353 (371)
T cd08281 326 IPRYLALYLSGRLPVDKLLTHRLPLDEI 353 (371)
T ss_pred HHHHHHHHHcCCCCchhheeeeecHHHH
Confidence 8999999999999988899999999985
No 8
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=99.66 E-value=3e-16 Score=90.84 Aligned_cols=84 Identities=26% Similarity=0.494 Sum_probs=75.2
Q ss_pred hHHHHHHHHHcC-CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC-CCccccchhhhhcCeEEEEeecc-CCCHHH
Q 040104 3 AEEVEKIDKAMG-TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-HEMTVPLTPAAAREVDVVGVFRY-KNTWPL 79 (105)
Q Consensus 3 ~~~~~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~ 79 (105)
.++.+++++.++ .++|++|||+|++..++.++++++++|+++.+|.+. .+.+++...++++++++.|++.+ ++++++
T Consensus 44 ~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~ 123 (130)
T PF00107_consen 44 DDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVYGGDPISFNLMNLMFKEITIRGSWGGSPEDFQE 123 (130)
T ss_dssp SSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHHHHEEEEEEEEEESSTSTSEEEEEHHHHHHTTEEEEEESSGGHHHHHH
T ss_pred cccccccccccccccceEEEEecCcHHHHHHHHHHhccCCEEEEEEccCCCCCCCCHHHHHhCCcEEEEEccCCHHHHHH
Confidence 457889999995 499999999998888999999999999999999887 66778888999999999999998 699999
Q ss_pred HHHHHHc
Q 040104 80 CLEFLRS 86 (105)
Q Consensus 80 ~~~~v~~ 86 (105)
+++++++
T Consensus 124 ~~~~la~ 130 (130)
T PF00107_consen 124 ALQLLAQ 130 (130)
T ss_dssp HHHHHH-
T ss_pred HHHHhcC
Confidence 9999874
No 9
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=99.66 E-value=6.2e-16 Score=102.80 Aligned_cols=101 Identities=26% Similarity=0.446 Sum_probs=83.9
Q ss_pred HHHHHHHHHcC-CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC--ccccchhhhhcCeEEEEeecc----CCC
Q 040104 4 EEVEKIDKAMG-TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE--MTVPLTPAAAREVDVVGVFRY----KNT 76 (105)
Q Consensus 4 ~~~~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~--~~~~~~~~~~~~~~i~~~~~~----~~~ 76 (105)
+..+.+++.++ .++|++|||+|++.++..++.+++++|+++.+|..... ..+++..++.+++++.+++.. ...
T Consensus 232 ~~~~~i~~~~~~~g~d~vid~~g~~~~~~~~~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 311 (358)
T TIGR03451 232 DPVEAIRALTGGFGADVVIDAVGRPETYKQAFYARDLAGTVVLVGVPTPDMTLELPLLDVFGRGGALKSSWYGDCLPERD 311 (358)
T ss_pred CHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCCCceeeccHHHHhhcCCEEEEeecCCCCcHHH
Confidence 45567777774 58999999999977799999999999999999986432 345665677889999988643 467
Q ss_pred HHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 77 WPLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 77 ~~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
++++++++++|+++++++|+++|||+|+
T Consensus 312 ~~~~~~l~~~g~l~~~~~i~~~~~l~~~ 339 (358)
T TIGR03451 312 FPMLVDLYLQGRLPLDAFVTERIGLDDV 339 (358)
T ss_pred HHHHHHHHHcCCCCchheEEEEecHHHH
Confidence 8999999999999888899999999985
No 10
>PLN02827 Alcohol dehydrogenase-like
Probab=99.64 E-value=1.4e-15 Score=101.95 Aligned_cols=101 Identities=23% Similarity=0.316 Sum_probs=83.1
Q ss_pred HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcC-CEEEEEcCCCCCccccc-hhhhhcCeEEEEeecc----CCCH
Q 040104 4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHHEMTVPL-TPAAAREVDVVGVFRY----KNTW 77 (105)
Q Consensus 4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~-~~~~~~~~~i~~~~~~----~~~~ 77 (105)
++.+.+++.+++++|++||++|.+..+..++++++++ |+++.+|.+.....+.. ..++.+++++.|++.. ..++
T Consensus 251 ~~~~~v~~~~~~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~ 330 (378)
T PLN02827 251 PIQQVIKRMTGGGADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKAKPEVSAHYGLFLSGRTLKGSLFGGWKPKSDL 330 (378)
T ss_pred HHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhccCCCEEEEECCcCCCccccccHHHHhcCceEEeeecCCCchhhhH
Confidence 4556777777558999999999987799999999999 99999998654334433 3467899999998764 3578
Q ss_pred HHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 78 PLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 78 ~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
.++++++++|+++++++|+++|||+|+
T Consensus 331 ~~~~~~~~~g~i~~~~~i~~~~~le~~ 357 (378)
T PLN02827 331 PSLVDKYMNKEIMIDEFITHNLSFDEI 357 (378)
T ss_pred HHHHHHHHcCCCChHHheEEEecHHHH
Confidence 999999999999877799999999975
No 11
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=99.64 E-value=1.1e-15 Score=101.11 Aligned_cols=90 Identities=29% Similarity=0.552 Sum_probs=79.9
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeeccCCCHHHHHHHHHcCCCCCCCc
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPL 94 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~g~i~~~~~ 94 (105)
+++|++|||+|++..+..++++++++|+++.+|.+....++++..++.+++++.|++.+..+++++++++++|++++.++
T Consensus 234 g~~D~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~l~~~g~i~~~~~ 313 (343)
T PRK09880 234 GYFDVSFEVSGHPSSINTCLEVTRAKGVMVQVGMGGAPPEFPMMTLIVKEISLKGSFRFTEEFNTAVSWLANGVINPLPL 313 (343)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCCccCHHHHHhCCcEEEEEeeccccHHHHHHHHHcCCCCchhh
Confidence 36999999999987799999999999999999986555667777788999999998877788999999999999988889
Q ss_pred eeeeeeCCCC
Q 040104 95 VTHRFGFSQK 104 (105)
Q Consensus 95 i~~~~~l~~~ 104 (105)
|+++|||+|+
T Consensus 314 i~~~~~l~~~ 323 (343)
T PRK09880 314 LSAEYPFTDL 323 (343)
T ss_pred eEEEEEHHHH
Confidence 9999999875
No 12
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=99.63 E-value=4e-15 Score=98.64 Aligned_cols=100 Identities=25% Similarity=0.411 Sum_probs=84.0
Q ss_pred HHHHHHHHHc-CCCCc----EEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCH
Q 040104 4 EEVEKIDKAM-GTGID----VSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTW 77 (105)
Q Consensus 4 ~~~~~~~~~~-~~g~d----~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 77 (105)
++.+.+++.+ +.|+| ++|||+|++.++..++++++++|+++.+|.+..+..+++..++.++.++.|++.+ ..++
T Consensus 224 ~~~~~~~~~t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 303 (349)
T TIGR03201 224 EVKKLIKAFAKARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVVGYTMAKTEYRLSNLMAFHARALGNWGCPPDRY 303 (349)
T ss_pred HHHHHHHhhcccCCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEEECcCCCCcccCHHHHhhcccEEEEEecCCHHHH
Confidence 5667778888 46886 8999999988788999999999999999987655566666777788899998866 6789
Q ss_pred HHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 78 PLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 78 ~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
+++++++++|++++.++++ +|||+|+
T Consensus 304 ~~~~~~i~~g~i~~~~~i~-~~~l~~~ 329 (349)
T TIGR03201 304 PAALDLVLDGKIQLGPFVE-RRPLDQI 329 (349)
T ss_pred HHHHHHHHcCCCCcccceE-EecHHHH
Confidence 9999999999998877786 7999875
No 13
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=99.62 E-value=2.5e-15 Score=101.65 Aligned_cols=101 Identities=14% Similarity=0.167 Sum_probs=84.1
Q ss_pred HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCC-CC--CccccchhhhhcCeEEEEeecc-CCCHH
Q 040104 4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG-HH--EMTVPLTPAAAREVDVVGVFRY-KNTWP 78 (105)
Q Consensus 4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~--~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 78 (105)
++.+.+++.+ +.++|++||++|++..+..++++++++|+++.++.. .. +.++++..++.+++++.|++.. ..+++
T Consensus 244 ~~~~~v~~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~ 323 (410)
T cd08238 244 DLHATLMELTGGQGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAGPVDKNFSAPLNFYNVHYNNTHYVGTSGGNTDDMK 323 (410)
T ss_pred cHHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEccCCCCccccccHHHhhhcCcEEEEeCCCCHHHHH
Confidence 4556777777 458999999999888899999999999988877542 22 2456666788899999998876 67899
Q ss_pred HHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 79 LCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 79 ~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
++++++++|++++.++|+++|||+|+
T Consensus 324 ~~~~li~~g~i~~~~~it~~~~l~~~ 349 (410)
T cd08238 324 EAIDLMAAGKLNPARMVTHIGGLNAA 349 (410)
T ss_pred HHHHHHHcCCCchhhcEEEEecHHHH
Confidence 99999999999988899999999875
No 14
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=99.61 E-value=7.4e-15 Score=97.27 Aligned_cols=101 Identities=32% Similarity=0.557 Sum_probs=86.5
Q ss_pred HHHHHHHHHcC-CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHH
Q 040104 4 EEVEKIDKAMG-TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCL 81 (105)
Q Consensus 4 ~~~~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~ 81 (105)
++.+.+++.++ +++|++||++|....+..++++++++|+++.+|....+.++++..+..+++++.+++.+ ..++++++
T Consensus 228 ~~~~~l~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~ 307 (351)
T cd08233 228 DVVAEVRKLTGGGGVDVSFDCAGVQATLDTAIDALRPRGTAVNVAIWEKPISFNPNDLVLKEKTLTGSICYTREDFEEVI 307 (351)
T ss_pred CHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCCCEEEEEccCCCCCccCHHHHHhhCcEEEEEeccCcchHHHHH
Confidence 35567777774 57999999999876799999999999999999986655667777778899999999877 78999999
Q ss_pred HHHHcCCCCCCCceeeeeeCCCC
Q 040104 82 EFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 82 ~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
+++++|+++++++++++|+|+|+
T Consensus 308 ~~~~~g~l~~~~~i~~~~~l~e~ 330 (351)
T cd08233 308 DLLASGKIDAEPLITSRIPLEDI 330 (351)
T ss_pred HHHHcCCCChHHheEEEecHHHH
Confidence 99999999888889999999874
No 15
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=99.60 E-value=3.9e-15 Score=97.77 Aligned_cols=86 Identities=27% Similarity=0.419 Sum_probs=76.4
Q ss_pred CcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC-CC-ccccchhhhhcCeEEEEeecc-CCCHHHHHHHHHcCCCCCCC
Q 040104 17 IDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-HE-MTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRSGKIDIKP 93 (105)
Q Consensus 17 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~-~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~g~i~~~~ 93 (105)
+|+++|+++ +.+++.++++|+++|+++++|.+. .+ ..++...+.+++++|.||... +.++++++++.++|++ ++
T Consensus 230 ~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~~~d~~e~l~f~~~g~I--kp 306 (339)
T COG1064 230 ADAIIDTVG-PATLEPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGTRADLEEALDFAAEGKI--KP 306 (339)
T ss_pred CcEEEECCC-hhhHHHHHHHHhcCCEEEEECCCCCcccCCCCHHHhhhcCeEEEEEecCCHHHHHHHHHHHHhCCc--ee
Confidence 999999999 777999999999999999999984 43 447778889999999999998 9999999999999999 66
Q ss_pred ceeeeeeCCCCC
Q 040104 94 LVTHRFGFSQKE 105 (105)
Q Consensus 94 ~i~~~~~l~~~~ 105 (105)
.+.+++||+|++
T Consensus 307 ~i~e~~~l~~in 318 (339)
T COG1064 307 EILETIPLDEIN 318 (339)
T ss_pred eEEeeECHHHHH
Confidence 675689999864
No 16
>PLN02740 Alcohol dehydrogenase-like
Probab=99.60 E-value=6.1e-15 Score=98.89 Aligned_cols=100 Identities=26% Similarity=0.440 Sum_probs=80.6
Q ss_pred HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcC-CEEEEEcCCCCCccccchhh-hhcCeEEEEeecc----CCCHH
Q 040104 5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHHEMTVPLTPA-AAREVDVVGVFRY----KNTWP 78 (105)
Q Consensus 5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~-~~~~~~i~~~~~~----~~~~~ 78 (105)
+.+.+++.+++++|++||++|++..+..++.+++++ |+++.+|.+..+..+++..+ +++++++.|++.+ ..+++
T Consensus 257 ~~~~v~~~~~~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~ 336 (381)
T PLN02740 257 VHERIREMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTPKMLPLHPMELFDGRSITGSVFGDFKGKSQLP 336 (381)
T ss_pred HHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhhcCCCEEEEEccCCCCceecccHHHHhcCCeEEEEecCCCCcHHHHH
Confidence 566777777558999999999987799999999997 99999998654333333333 3578899988764 34789
Q ss_pred HHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 79 LCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 79 ~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
++++++.+|+++++++|+++|||+|+
T Consensus 337 ~~~~~~~~g~i~~~~~it~~~~l~e~ 362 (381)
T PLN02740 337 NLAKQCMQGVVNLDGFITHELPFEKI 362 (381)
T ss_pred HHHHHHHcCCCChHHheeEEecHHHH
Confidence 99999999999888899999999985
No 17
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=99.60 E-value=7.5e-15 Score=96.80 Aligned_cols=98 Identities=32% Similarity=0.593 Sum_probs=81.7
Q ss_pred HHHHHHHcC-CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccc-hhhhhcCeEEEEeecc-CCCHHHHHH
Q 040104 6 VEKIDKAMG-TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPL-TPAAAREVDVVGVFRY-KNTWPLCLE 82 (105)
Q Consensus 6 ~~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~-~~~~~~~~~i~~~~~~-~~~~~~~~~ 82 (105)
.+.+++.++ .++|++|||+|+...+..++++++++|+++.+|.... ..++. ..++.+++++.|++.. .++++++++
T Consensus 220 ~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~ 298 (339)
T cd08239 220 VQEIRELTSGAGADVAIECSGNTAARRLALEAVRPWGRLVLVGEGGE-LTIEVSNDLIRKQRTLIGSWYFSVPDMEECAE 298 (339)
T ss_pred HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcCCCC-cccCcHHHHHhCCCEEEEEecCCHHHHHHHHH
Confidence 455666774 5899999999998867899999999999999997543 23443 3467799999999887 678999999
Q ss_pred HHHcCCCCCCCceeeeeeCCCC
Q 040104 83 FLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 83 ~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
++.+|+++++++++++|+|+|+
T Consensus 299 ~~~~g~i~~~~~i~~~~~l~~~ 320 (339)
T cd08239 299 FLARHKLEVDRLVTHRFGLDQA 320 (339)
T ss_pred HHHcCCCChhHeEEEEecHHHH
Confidence 9999999888899999999875
No 18
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=99.60 E-value=1e-14 Score=96.50 Aligned_cols=98 Identities=22% Similarity=0.457 Sum_probs=79.8
Q ss_pred HHHHHHc-CCCCc-EEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCcccc---chhhhhcCeEEEEeecc------CC
Q 040104 7 EKIDKAM-GTGID-VSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVP---LTPAAAREVDVVGVFRY------KN 75 (105)
Q Consensus 7 ~~~~~~~-~~g~d-~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~---~~~~~~~~~~i~~~~~~------~~ 75 (105)
+++.+.+ +.++| ++|||+|++.++..++++++++|+++.+|....+..++ +..+..+++++.|++.+ +.
T Consensus 218 ~~~~~~~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~ 297 (347)
T PRK10309 218 PQIQSVLRELRFDQLILETAGVPQTVELAIEIAGPRAQLALVGTLHHDLHLTSATFGKILRKELTVIGSWMNYSSPWPGQ 297 (347)
T ss_pred HHHHHHhcCCCCCeEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCcccChhhhhHHhhcCcEEEEEeccccCCcchh
Confidence 4456666 45888 99999999877999999999999999999765443333 23567789999998753 25
Q ss_pred CHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 76 TWPLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 76 ~~~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
+++++++++++|+++++++|+++|||+|+
T Consensus 298 ~~~~~~~~~~~g~i~~~~~i~~~~~l~~~ 326 (347)
T PRK10309 298 EWETASRLLTERKLSLEPLIAHRGSFESF 326 (347)
T ss_pred HHHHHHHHHHcCCCCchhheEEEeeHHHH
Confidence 78999999999999888999999999985
No 19
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=99.55 E-value=5.2e-14 Score=92.87 Aligned_cols=98 Identities=23% Similarity=0.463 Sum_probs=82.0
Q ss_pred hHHHHHHHHHcC-CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC--CccccchhhhhcCeEEEEeecc-C----
Q 040104 3 AEEVEKIDKAMG-TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH--EMTVPLTPAAAREVDVVGVFRY-K---- 74 (105)
Q Consensus 3 ~~~~~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~-~---- 74 (105)
+++.++++++++ .++|+|+|++|+.. +..++.+|+++|+++.+|...+ ...++...+..+.+++.|.... .
T Consensus 197 ~~~~~~v~~~t~g~gvDvv~D~vG~~~-~~~~l~~l~~~G~lv~ig~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 275 (326)
T COG0604 197 EDFVEQVRELTGGKGVDVVLDTVGGDT-FAASLAALAPGGRLVSIGALSGGPPVPLNLLPLLGKRLTLRGVTLGSRDPEA 275 (326)
T ss_pred ccHHHHHHHHcCCCCceEEEECCCHHH-HHHHHHHhccCCEEEEEecCCCCCccccCHHHHhhccEEEEEecceecchHH
Confidence 458899999995 59999999999987 9999999999999999998652 3445666667788888877665 4
Q ss_pred --CCHHHHHHHHHcCCCCCCCceeeeeeCCC
Q 040104 75 --NTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103 (105)
Q Consensus 75 --~~~~~~~~~v~~g~i~~~~~i~~~~~l~~ 103 (105)
+.+.++.+++.+|++ ++.|+++|||+|
T Consensus 276 ~~~~~~~l~~~~~~g~l--~~~i~~~~~l~e 304 (326)
T COG0604 276 LAEALAELFDLLASGKL--KPVIDRVYPLAE 304 (326)
T ss_pred HHHHHHHHHHHHHcCCC--cceeccEechhh
Confidence 467779999999999 778899999998
No 20
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=99.55 E-value=1.6e-14 Score=95.59 Aligned_cols=88 Identities=18% Similarity=0.363 Sum_probs=74.8
Q ss_pred CCcEEEEccCC---hHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHHHHHHcC---C
Q 040104 16 GIDVSFDCAGF---NKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRSG---K 88 (105)
Q Consensus 16 g~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~g---~ 88 (105)
++|++||++|+ +.++..++++++++|+++.+|.+..+..++...++.+++++.|+..+ ..+++++++++++| +
T Consensus 222 g~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~~~~~~~~~ 301 (341)
T cd08237 222 AVDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMGVSEYPVPINTRMVLEKGLTLVGSSRSTREDFERAVELLSRNPEVA 301 (341)
T ss_pred CCcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEeecCCCcccCHHHHhhCceEEEEecccCHHHHHHHHHHHHhCCccc
Confidence 79999999994 45699999999999999999976555566766778899999998876 67899999999999 3
Q ss_pred CCCCCceeeeeeCCC
Q 040104 89 IDIKPLVTHRFGFSQ 103 (105)
Q Consensus 89 i~~~~~i~~~~~l~~ 103 (105)
.+++++|+++|||++
T Consensus 302 ~~l~~~i~~~~~l~~ 316 (341)
T cd08237 302 EYLRKLVGGVFPVRS 316 (341)
T ss_pred CChHHHhcccccccc
Confidence 356889999999964
No 21
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=99.54 E-value=3e-14 Score=95.52 Aligned_cols=93 Identities=20% Similarity=0.253 Sum_probs=77.7
Q ss_pred HHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHHHHHHc
Q 040104 8 KIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRS 86 (105)
Q Consensus 8 ~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~ 86 (105)
.+++.++ ++|++|||+|++.++..++++++++|+++.+|.+..+..+++..++++++++.|++.+ ..+++++++++++
T Consensus 235 ~v~~~~~-~~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~ 313 (375)
T PLN02178 235 KMKEAVG-TMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLPEKPLDLPIFPLVLGRKMVGGSQIGGMKETQEMLEFCAK 313 (375)
T ss_pred HHHHhhC-CCcEEEECCCcHHHHHHHHHhhcCCCEEEEEccCCCCCccCHHHHHhCCeEEEEeCccCHHHHHHHHHHHHh
Confidence 4455444 7999999999987799999999999999999986555667777788899999999876 5789999999999
Q ss_pred CCCCCCCceeeeeeCCCC
Q 040104 87 GKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 87 g~i~~~~~i~~~~~l~~~ 104 (105)
|+++ +.+ ++|||+|+
T Consensus 314 g~i~--~~i-~~~~l~~~ 328 (375)
T PLN02178 314 HKIV--SDI-ELIKMSDI 328 (375)
T ss_pred CCCc--ccE-EEEeHHHH
Confidence 9995 445 57999875
No 22
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=99.53 E-value=2.9e-14 Score=96.10 Aligned_cols=101 Identities=15% Similarity=0.247 Sum_probs=75.6
Q ss_pred HHHHHHHHHc-CCCCcEEEEccCCh--------------HHHHHHHHhhhcCCEEEEEcCCC-C-Cc-----------cc
Q 040104 4 EEVEKIDKAM-GTGIDVSFDCAGFN--------------KTMSTALSATRAGGKVCLVGMGH-H-EM-----------TV 55 (105)
Q Consensus 4 ~~~~~~~~~~-~~g~d~vid~~g~~--------------~~~~~~~~~l~~~G~~v~~g~~~-~-~~-----------~~ 55 (105)
+..+.+.+.+ ++++|++|||+|.+ .++++++++++++|+++.+|.+. + +. ++
T Consensus 241 ~~~~~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~~~~~~~~~~~~~~~~~~~i 320 (393)
T TIGR02819 241 TLPEQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLYVTEDPGAVDAAAKTGSLSI 320 (393)
T ss_pred cHHHHHHHHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeecCCccccccccccccccccc
Confidence 3456677777 45899999999986 36999999999999999999863 2 11 12
Q ss_pred cchhhhhcCeEEEEeeccC-CCHHHHHHHHHcCCCCCCCcee-eeeeCCCC
Q 040104 56 PLTPAAAREVDVVGVFRYK-NTWPLCLEFLRSGKIDIKPLVT-HRFGFSQK 104 (105)
Q Consensus 56 ~~~~~~~~~~~i~~~~~~~-~~~~~~~~~v~~g~i~~~~~i~-~~~~l~~~ 104 (105)
....++.+++++.|+.... ..+.++++++++|+++++++++ ++|||+|+
T Consensus 321 ~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~~l~~~ 371 (393)
T TIGR02819 321 RFGLGWAKSHSFHTGQTPVMKYNRNLMQAILHDRVQIAKAVNVTVISLDDA 371 (393)
T ss_pred chHHhhccCceEEeccCChhhhHHHHHHHHHcCCCCHHHceecceecHHHH
Confidence 2333456677777754442 3447899999999998888887 78999975
No 23
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=99.53 E-value=6.9e-14 Score=93.35 Aligned_cols=101 Identities=25% Similarity=0.429 Sum_probs=80.0
Q ss_pred HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcC-CEEEEEcCCCCCccccchh-hhhcCeEEEEeecc----CCCH
Q 040104 4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHHEMTVPLTP-AAAREVDVVGVFRY----KNTW 77 (105)
Q Consensus 4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~-~~~~~~~i~~~~~~----~~~~ 77 (105)
++.+.+++.+++++|++||++|.+..+..++.+++++ |+++.+|....+..+++.. .+++++++.|++.. +.++
T Consensus 245 ~~~~~v~~~~~~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~ 324 (369)
T cd08301 245 PVQEVIAEMTGGGVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAVFSTHPMNLLNGRTLKGTLFGGYKPKTDL 324 (369)
T ss_pred hHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhhcCCCEEEEECcCCCCcccccCHHHHhcCCeEEEEecCCCChHHHH
Confidence 3556677777668999999999987789999999996 9999999865332333322 13478999998754 3578
Q ss_pred HHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 78 PLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 78 ~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
+++++++.+|+++++++++++|||+|+
T Consensus 325 ~~~~~~~~~g~~~~~~~i~~~~~l~~~ 351 (369)
T cd08301 325 PNLVEKYMKKELELEKFITHELPFSEI 351 (369)
T ss_pred HHHHHHHHcCCCCcHHheeeeecHHHH
Confidence 999999999999888889999999875
No 24
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=99.51 E-value=1.5e-13 Score=91.88 Aligned_cols=99 Identities=23% Similarity=0.314 Sum_probs=76.6
Q ss_pred HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcC-CEEEEEcCCCC--CccccchhhhhcCeEEEEeecc----CCCH
Q 040104 5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHH--EMTVPLTPAAAREVDVVGVFRY----KNTW 77 (105)
Q Consensus 5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~----~~~~ 77 (105)
+.+.+++.+++++|++|||+|++..+..++++++++ |+++.+|.+.. +..++...+. ++..+.+++.. +.++
T Consensus 244 ~~~~v~~~~~~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~ 322 (368)
T TIGR02818 244 IQEVIVEITDGGVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAGQEISTRPFQLV-TGRVWRGSAFGGVKGRTEL 322 (368)
T ss_pred HHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEeccCCCCcccccHHHHh-ccceEEEeeccCCCcHHHH
Confidence 456677777558999999999887799999999996 99999997542 2233333333 34456776543 4578
Q ss_pred HHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 78 PLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 78 ~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
+++++++++|+++++++++++|||+|+
T Consensus 323 ~~~~~~~~~g~i~~~~~it~~~~l~~~ 349 (368)
T TIGR02818 323 PGIVEQYMKGEIALDDFVTHTMPLEDI 349 (368)
T ss_pred HHHHHHHHCCCCCchhheeEEecHHHH
Confidence 999999999999888899999999985
No 25
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=99.51 E-value=1.8e-13 Score=91.34 Aligned_cols=99 Identities=27% Similarity=0.403 Sum_probs=79.7
Q ss_pred HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcC-CEEEEEcCCCC-CccccchhhhhcCeEEEEeecc----CCCHH
Q 040104 5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHH-EMTVPLTPAAAREVDVVGVFRY----KNTWP 78 (105)
Q Consensus 5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~----~~~~~ 78 (105)
+.+.+++.+++++|++|||+|+...+..++++++++ |+++.+|...+ ..+++...+.. ++++.|++.+ +.+++
T Consensus 243 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~i~g~~~~~~~~~~~~~ 321 (365)
T cd08277 243 VSEVIREMTGGGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPGAELSIRPFQLIL-GRTWKGSFFGGFKSRSDVP 321 (365)
T ss_pred HHHHHHHHhCCCCCEEEECCCChHHHHHHHHhcccCCCEEEEEcCCCccccccCHhHHhh-CCEEEeeecCCCChHHHHH
Confidence 355677777668999999999877789999999986 99999997642 33455544544 8899888765 35789
Q ss_pred HHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 79 LCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 79 ~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
++++++++|+++++++++++|||+|+
T Consensus 322 ~~~~~~~~~~~~~~~~i~~~~~l~~~ 347 (365)
T cd08277 322 KLVSKYMNKKFDLDELITHVLPFEEI 347 (365)
T ss_pred HHHHHHHCCCcChhHheeeEEchhhH
Confidence 99999999999888999999999986
No 26
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=99.51 E-value=1.6e-13 Score=91.62 Aligned_cols=100 Identities=21% Similarity=0.312 Sum_probs=76.7
Q ss_pred HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcC-CEEEEEcCCCCC--ccccchhhhhcCeEEEEeecc----CCC
Q 040104 4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHHE--MTVPLTPAAAREVDVVGVFRY----KNT 76 (105)
Q Consensus 4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~--~~~~~~~~~~~~~~i~~~~~~----~~~ 76 (105)
++.+.+++.+++++|++||++|++..+..++++++++ |+++.+|..... ..++...+. ++.++.++... +.+
T Consensus 244 ~~~~~v~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~ 322 (368)
T cd08300 244 PIQQVLVEMTDGGVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAGQEISTRPFQLV-TGRVWKGTAFGGWKSRSQ 322 (368)
T ss_pred HHHHHHHHHhCCCCcEEEECCCChHHHHHHHHhhccCCCeEEEEccCCCCCccccCHHHHh-hcCeEEEEEecccCcHHH
Confidence 4667778888668999999999877799999999997 999999976422 222222222 34566665432 567
Q ss_pred HHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 77 WPLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 77 ~~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
++++++++++|++++.++|+++|||+|+
T Consensus 323 ~~~~~~~~~~g~l~~~~~i~~~~~le~~ 350 (368)
T cd08300 323 VPKLVEDYMKGKIKVDEFITHTMPLDEI 350 (368)
T ss_pred HHHHHHHHHcCCCChhhceeeeEcHHHH
Confidence 8999999999999888899999999985
No 27
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=99.49 E-value=1.4e-13 Score=91.88 Aligned_cols=93 Identities=17% Similarity=0.218 Sum_probs=76.1
Q ss_pred HHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHHHHHHc
Q 040104 8 KIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRS 86 (105)
Q Consensus 8 ~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~ 86 (105)
.+++.++ ++|++||++|++.++..++++++++|+++.+|....+..+++..++.++..+.|++.+ ..+++++++++++
T Consensus 240 ~~~~~~~-~~D~vid~~g~~~~~~~~~~~l~~~G~iv~vG~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~li~~ 318 (360)
T PLN02586 240 KMKAAIG-TMDYIIDTVSAVHALGPLLGLLKVNGKLITLGLPEKPLELPIFPLVLGRKLVGGSDIGGIKETQEMLDFCAK 318 (360)
T ss_pred HHHhhcC-CCCEEEECCCCHHHHHHHHHHhcCCcEEEEeCCCCCCCccCHHHHHhCCeEEEEcCcCCHHHHHHHHHHHHh
Confidence 3444444 6999999999877799999999999999999976555667777777888888888766 5689999999999
Q ss_pred CCCCCCCceeeeeeCCCC
Q 040104 87 GKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 87 g~i~~~~~i~~~~~l~~~ 104 (105)
|++++ .+ ++|||+|+
T Consensus 319 g~i~~--~~-~~~~l~~~ 333 (360)
T PLN02586 319 HNITA--DI-ELIRMDEI 333 (360)
T ss_pred CCCCC--cE-EEEeHHHH
Confidence 99954 45 48999985
No 28
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=99.48 E-value=2e-13 Score=90.91 Aligned_cols=92 Identities=15% Similarity=0.175 Sum_probs=76.4
Q ss_pred HHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHHHHHHcC
Q 040104 9 IDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRSG 87 (105)
Q Consensus 9 ~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~g 87 (105)
+++.+ .++|++|||+|....+..++++++++|+++.+|....+.+++...++.+++++.|++.. ..++.++++++++|
T Consensus 238 ~~~~~-~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~g 316 (357)
T PLN02514 238 MQEAA-DSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPLQFVTPMLMLGRKVITGSFIGSMKETEEMLEFCKEK 316 (357)
T ss_pred HHHhc-CCCcEEEECCCchHHHHHHHHHhccCCEEEEECCCCCCCcccHHHHhhCCcEEEEEecCCHHHHHHHHHHHHhC
Confidence 34433 37999999999876799999999999999999986655567767778899999999877 56899999999999
Q ss_pred CCCCCCceeeeeeCCCC
Q 040104 88 KIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 88 ~i~~~~~i~~~~~l~~~ 104 (105)
++ +++++ +|||+|+
T Consensus 317 ~l--~~~i~-~~~l~~~ 330 (357)
T PLN02514 317 GL--TSMIE-VVKMDYV 330 (357)
T ss_pred CC--cCcEE-EEcHHHH
Confidence 88 56675 8999985
No 29
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=99.48 E-value=5.2e-14 Score=89.00 Aligned_cols=100 Identities=21% Similarity=0.396 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-CccccchhhhhcCeEEE-----EeeccC
Q 040104 2 IAEEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAAREVDVV-----GVFRYK 74 (105)
Q Consensus 2 ~~~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~-----~~~~~~ 74 (105)
.+|+.++++++| |+|+|+++|.+|... +..++.+|++.|.+|.+|..++ ..++++..+.-+.+++. |.....
T Consensus 200 ~eD~v~~V~kiTngKGVd~vyDsvG~dt-~~~sl~~Lk~~G~mVSfG~asgl~~p~~l~~ls~k~l~lvrpsl~gYi~g~ 278 (336)
T KOG1197|consen 200 TEDYVDEVKKITNGKGVDAVYDSVGKDT-FAKSLAALKPMGKMVSFGNASGLIDPIPLNQLSPKALQLVRPSLLGYIDGE 278 (336)
T ss_pred chhHHHHHHhccCCCCceeeeccccchh-hHHHHHHhccCceEEEeccccCCCCCeehhhcChhhhhhccHhhhcccCCH
Confidence 478999999999 789999999999987 9999999999999999998654 23455555544444433 222222
Q ss_pred ----CCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 75 ----NTWPLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 75 ----~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
....+++.++.+|++ +..|.|+|||+++
T Consensus 279 ~el~~~v~rl~alvnsg~l--k~~I~~~ypls~v 310 (336)
T KOG1197|consen 279 VELVSYVARLFALVNSGHL--KIHIDHVYPLSKV 310 (336)
T ss_pred HHHHHHHHHHHHHhhcCcc--ceeeeeecchHHH
Confidence 245778899999999 6679999999875
No 30
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=99.47 E-value=1.6e-13 Score=91.19 Aligned_cols=98 Identities=17% Similarity=0.288 Sum_probs=77.0
Q ss_pred HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-Cc-----cccchhhhhcCeEEEEeecc----
Q 040104 4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EM-----TVPLTPAAAREVDVVGVFRY---- 73 (105)
Q Consensus 4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~-----~~~~~~~~~~~~~i~~~~~~---- 73 (105)
++.+.+++.+++|+|++|||+|+.. +..++++++++|+++.+|.... +. .++...+..+++++.|++.+
T Consensus 216 ~~~~~i~~~~~~gvD~v~d~vG~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~ 294 (348)
T PLN03154 216 DLDAALKRYFPEGIDIYFDNVGGDM-LDAALLNMKIHGRIAVCGMVSLNSLSASQGIHNLYNLISKRIRMQGFLQSDYLH 294 (348)
T ss_pred cHHHHHHHHCCCCcEEEEECCCHHH-HHHHHHHhccCCEEEEECccccCCCCCCCCcccHHHHhhccceEEEEEHHHHHH
Confidence 4556677777678999999999864 9999999999999999997542 21 12445567899999988754
Q ss_pred --CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 74 --KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 74 --~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
.+.++++++++++|++ ++.++++|||+++
T Consensus 295 ~~~~~~~~~~~l~~~G~l--~~~~~~~~~L~~~ 325 (348)
T PLN03154 295 LFPQFLENVSRYYKQGKI--VYIEDMSEGLESA 325 (348)
T ss_pred HHHHHHHHHHHHHHCCCc--cCceecccCHHHH
Confidence 2457889999999999 5567778999875
No 31
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=99.47 E-value=1.8e-13 Score=90.97 Aligned_cols=91 Identities=22% Similarity=0.220 Sum_probs=75.0
Q ss_pred CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC--Ccccc----chhhhhcCeEEEEeecc-CCCHHHHHHHHHc
Q 040104 14 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH--EMTVP----LTPAAAREVDVVGVFRY-KNTWPLCLEFLRS 86 (105)
Q Consensus 14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~----~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~ 86 (105)
.+++|++|||+|.+..+..++++++++|+++.+|...+ ...++ ...++++++++.|++.. ++++.++++++.+
T Consensus 236 ~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~ 315 (355)
T cd08230 236 VGEFDLIIEATGVPPLAFEALPALAPNGVVILFGVPGGGREFEVDGGELNRDLVLGNKALVGSVNANKRHFEQAVEDLAQ 315 (355)
T ss_pred cCCCCEEEECcCCHHHHHHHHHHccCCcEEEEEecCCCCCccccChhhhhhhHhhcCcEEEEecCCchhhHHHHHHHHHh
Confidence 35799999999988779999999999999999997654 33444 34567899999998776 7789999999998
Q ss_pred CCC----CCCCceeeeeeCCCC
Q 040104 87 GKI----DIKPLVTHRFGFSQK 104 (105)
Q Consensus 87 g~i----~~~~~i~~~~~l~~~ 104 (105)
+++ +++++++++|+|+|+
T Consensus 316 ~~~~~~~~~~~~i~~~~~l~~~ 337 (355)
T cd08230 316 WKYRWPGVLERLITRRVPLEEF 337 (355)
T ss_pred cccccccchHHheeeeecHHHH
Confidence 872 247789999999875
No 32
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=99.39 E-value=3.4e-12 Score=84.90 Aligned_cols=98 Identities=22% Similarity=0.412 Sum_probs=80.0
Q ss_pred HHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC--CccccchhhhhcCeEEEEeecc-CCCHHHHHH
Q 040104 7 EKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH--EMTVPLTPAAAREVDVVGVFRY-KNTWPLCLE 82 (105)
Q Consensus 7 ~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~ 82 (105)
+.+++.+ ++++|++|||+|+...+..++++++++|+++.+|.... ...++...+..+++++.+++.+ .+++.++++
T Consensus 239 ~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (361)
T cd08231 239 AIVRDITGGRGADVVIEASGHPAAVPEGLELLRRGGTYVLVGSVAPAGTVPLDPERIVRKNLTIIGVHNYDPSHLYRAVR 318 (361)
T ss_pred HHHHHHhCCCCCcEEEECCCChHHHHHHHHHhccCCEEEEEcCCCCCCccccCHHHHhhcccEEEEcccCCchhHHHHHH
Confidence 4677777 46899999999987668999999999999999996542 2334444568899999998876 778999999
Q ss_pred HHHcC--CCCCCCceeeeeeCCCC
Q 040104 83 FLRSG--KIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 83 ~v~~g--~i~~~~~i~~~~~l~~~ 104 (105)
++.++ .++++++++++|+++++
T Consensus 319 ~~~~~~~~~~~~~~i~~~~~l~~~ 342 (361)
T cd08231 319 FLERTQDRFPFAELVTHRYPLEDI 342 (361)
T ss_pred HHHhccCcCCchhheeeeeeHHHH
Confidence 99998 66678889999999875
No 33
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=99.37 E-value=2.7e-12 Score=84.25 Aligned_cols=97 Identities=11% Similarity=0.148 Sum_probs=76.6
Q ss_pred HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-Cc-cccchhhhhcCeEEEEeecc-------
Q 040104 4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EM-TVPLTPAAAREVDVVGVFRY------- 73 (105)
Q Consensus 4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~-~~~~~~~~~~~~~i~~~~~~------- 73 (105)
++.+.+++.+ ++++|++||++|+.. ....+.+++++|+++.+|.... .. .++...++.+++++.++...
T Consensus 199 ~~~~~v~~~~~~~~~d~vid~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (324)
T cd08291 199 DFLEDLKELIAKLNATIFFDAVGGGL-TGQILLAMPYGSTLYVYGYLSGKLDEPIDPVDLIFKNKSIEGFWLTTWLQKLG 277 (324)
T ss_pred cHHHHHHHHhCCCCCcEEEECCCcHH-HHHHHHhhCCCCEEEEEEecCCCCcccCCHHHHhhcCcEEEEEEHHHhhcccC
Confidence 5667788877 468999999999887 7888999999999999996432 22 25555667899999888754
Q ss_pred CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 74 KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 74 ~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
.+.+++++++++ |++ +++++++|||+|+
T Consensus 278 ~~~~~~~~~~~~-~~~--~~~i~~~~~l~~~ 305 (324)
T cd08291 278 PEVVKKLKKLVK-TEL--KTTFASRYPLALT 305 (324)
T ss_pred HHHHHHHHHHHh-Ccc--ccceeeEEcHHHH
Confidence 235778889988 877 7789999999875
No 34
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.34 E-value=1e-11 Score=80.81 Aligned_cols=97 Identities=19% Similarity=0.277 Sum_probs=82.5
Q ss_pred hHHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHH
Q 040104 3 AEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCL 81 (105)
Q Consensus 3 ~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~ 81 (105)
++..+++.+.++.++|.+... ....++.+++++|++|++|.+|.+..+..++..++.++.++|.||... +.+.+|++
T Consensus 237 ~d~~~~~~~~~dg~~~~v~~~--a~~~~~~~~~~lk~~Gt~V~vg~p~~~~~~~~~~lil~~~~I~GS~vG~~ket~E~L 314 (360)
T KOG0023|consen 237 PDIMKAIMKTTDGGIDTVSNL--AEHALEPLLGLLKVNGTLVLVGLPEKPLKLDTFPLILGRKSIKGSIVGSRKETQEAL 314 (360)
T ss_pred HHHHHHHHHhhcCcceeeeec--cccchHHHHHHhhcCCEEEEEeCcCCcccccchhhhcccEEEEeeccccHHHHHHHH
Confidence 456677777776677777765 344599999999999999999999888888999999999999999998 99999999
Q ss_pred HHHHcCCCCCCCceeeeeeCCCC
Q 040104 82 EFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 82 ~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
+++++|.+ +.+|. ..|++++
T Consensus 315 df~a~~~i--k~~IE-~v~~~~v 334 (360)
T KOG0023|consen 315 DFVARGLI--KSPIE-LVKLSEV 334 (360)
T ss_pred HHHHcCCC--cCceE-EEehhHH
Confidence 99999999 66676 7888875
No 35
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=99.28 E-value=1.1e-11 Score=81.84 Aligned_cols=87 Identities=17% Similarity=0.183 Sum_probs=72.2
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC-CCccccchhhhhcCeEEEEeecc-CCCHHHHHHHHHcCCCCCC
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-HEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRSGKIDIK 92 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~g~i~~~ 92 (105)
+++|+++++.|....+..++++++++|+++.+|... ....++...++++++++.+++.. +.++.++++++++|+++
T Consensus 222 ~~~d~~i~~~~~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~i~-- 299 (329)
T TIGR02822 222 EPLDAAILFAPAGGLVPPALEALDRGGVLAVAGIHLTDTPPLNYQRHLFYERQIRSVTSNTRADAREFLELAAQHGVR-- 299 (329)
T ss_pred ccceEEEECCCcHHHHHHHHHhhCCCcEEEEEeccCccCCCCCHHHHhhCCcEEEEeecCCHHHHHHHHHHHHhCCCe--
Confidence 368999998888788999999999999999999753 22346666677899999998776 66789999999999984
Q ss_pred CceeeeeeCCCC
Q 040104 93 PLVTHRFGFSQK 104 (105)
Q Consensus 93 ~~i~~~~~l~~~ 104 (105)
+++++|||+|+
T Consensus 300 -~i~~~~~l~~~ 310 (329)
T TIGR02822 300 -VTTHTYPLSEA 310 (329)
T ss_pred -eEEEEEeHHHH
Confidence 46889999985
No 36
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.27 E-value=4.3e-11 Score=79.36 Aligned_cols=101 Identities=23% Similarity=0.330 Sum_probs=74.4
Q ss_pred HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCc--cccchh--hhhcCeEEEEeecc--CCC
Q 040104 4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEM--TVPLTP--AAAREVDVVGVFRY--KNT 76 (105)
Q Consensus 4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~--~~~~~~--~~~~~~~i~~~~~~--~~~ 76 (105)
+..+++++.+ +.++|+++|++|++..+..++++++++|+++.+|...... .++... ...+..++.+.+.. ++.
T Consensus 222 ~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 301 (351)
T cd08285 222 DVVEQILKLTGGKGVDAVIIAGGGQDTFEQALKVLKPGGTISNVNYYGEDDYLPIPREEWGVGMGHKTINGGLCPGGRLR 301 (351)
T ss_pred CHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHhhcCCEEEEecccCCCceeecChhhhhhhccccEEEEeecCCcccc
Confidence 3455666666 4689999999998777999999999999999999765332 223212 23466677766554 678
Q ss_pred HHHHHHHHHcCCCCCCCc-eeeeeeCCCC
Q 040104 77 WPLCLEFLRSGKIDIKPL-VTHRFGFSQK 104 (105)
Q Consensus 77 ~~~~~~~v~~g~i~~~~~-i~~~~~l~~~ 104 (105)
++++++++++|++++..+ ++++|+|+++
T Consensus 302 ~~~~~~~~~~g~i~~~~~~~~~~~~l~~~ 330 (351)
T cd08285 302 MERLASLIEYGRVDPSKLLTHHFFGFDDI 330 (351)
T ss_pred HHHHHHHHHcCCCChhhceeccccCHHHH
Confidence 999999999999977444 4556898875
No 37
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=99.26 E-value=4.5e-11 Score=79.03 Aligned_cols=100 Identities=27% Similarity=0.449 Sum_probs=78.5
Q ss_pred HHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeeccCCCHHHHHHH
Q 040104 5 EVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEF 83 (105)
Q Consensus 5 ~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 83 (105)
..+.+.+.+ ++++|+++||+|+...+..+++.++++|+++.+|.......+++..++.+++++.+.......+.+++++
T Consensus 223 ~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (345)
T cd08286 223 AIEQVLELTDGRGVDVVIEAVGIPATFELCQELVAPGGHIANVGVHGKPVDLHLEKLWIKNITITTGLVDTNTTPMLLKL 302 (345)
T ss_pred HHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCCcEEEEecccCCCCCcCHHHHhhcCcEEEeecCchhhHHHHHHH
Confidence 445566666 4589999999998777899999999999999999765445566655667889988765444678899999
Q ss_pred HHcCCCCCCCceeeeeeCCCC
Q 040104 84 LRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 84 v~~g~i~~~~~i~~~~~l~~~ 104 (105)
+++|.+++.++++++|+++++
T Consensus 303 ~~~~~l~~~~~~~~~~~l~~~ 323 (345)
T cd08286 303 VSSGKLDPSKLVTHRFKLSEI 323 (345)
T ss_pred HHcCCCChHHcEEeEeeHHHH
Confidence 999999766667889998764
No 38
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=99.26 E-value=3.7e-11 Score=80.26 Aligned_cols=100 Identities=27% Similarity=0.397 Sum_probs=79.7
Q ss_pred HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhh-cCCEEEEEcCCC--CCccccchhhhhcCeEEEEeecc----CCC
Q 040104 4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATR-AGGKVCLVGMGH--HEMTVPLTPAAAREVDVVGVFRY----KNT 76 (105)
Q Consensus 4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~-~~G~~v~~g~~~--~~~~~~~~~~~~~~~~i~~~~~~----~~~ 76 (105)
+..+.+++.+++++|+++|++|....+..++++++ ++|+++.+|... ....++...+ .++.++.|++.. ...
T Consensus 241 ~~~~~l~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~ 319 (365)
T cd05279 241 PIVEVLTEMTDGGVDYAFEVIGSADTLKQALDATRLGGGTSVVVGVPPSGTEATLDPNDL-LTGRTIKGTVFGGWKSKDS 319 (365)
T ss_pred hHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhccCCCEEEEEecCCCCCceeeCHHHH-hcCCeEEEEeccCCchHhH
Confidence 45566777777789999999998667999999999 999999998653 3455655555 677888887543 577
Q ss_pred HHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 77 WPLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 77 ~~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
+.++++++++|++++.++++++|+++++
T Consensus 320 ~~~~~~l~~~~~l~~~~~~~~~~~l~~~ 347 (365)
T cd05279 320 VPKLVALYRQKKFPLDELITHVLPFEEI 347 (365)
T ss_pred HHHHHHHHHcCCcchhHheeeeecHHHH
Confidence 8999999999999876678888998764
No 39
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=99.26 E-value=5.8e-11 Score=78.73 Aligned_cols=100 Identities=24% Similarity=0.412 Sum_probs=77.2
Q ss_pred HHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhh-hhcCeEEEEeeccCCCHHHHHH
Q 040104 5 EVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA-AAREVDVVGVFRYKNTWPLCLE 82 (105)
Q Consensus 5 ~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~ 82 (105)
..+++.+.+ +.++|+++|++|+...+..++++++++|+++.+|.......+++..+ ..+++++.++......+.++++
T Consensus 231 ~~~~~~~~~~~~~vdvvld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 310 (350)
T cd08256 231 VVEKIKELTGGYGCDIYIEATGHPSAVEQGLNMIRKLGRFVEFSVFGDPVTVDWSIIGDRKELDVLGSHLGPYCYPIAID 310 (350)
T ss_pred HHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEccCCCCCccChhHhhcccccEEEEeccCchhHHHHHH
Confidence 456667776 45899999999976568999999999999999986554444444433 3567888887666667999999
Q ss_pred HHHcCCCCCCCceeeeeeCCCC
Q 040104 83 FLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 83 ~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
++++|.+++.++++++||++++
T Consensus 311 ~~~~g~l~~~~~~~~~~~l~~~ 332 (350)
T cd08256 311 LIASGRLPTDGIVTHQFPLEDF 332 (350)
T ss_pred HHHcCCCChhHheEEEeEHHHH
Confidence 9999999765557788998764
No 40
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=99.25 E-value=6.9e-11 Score=79.46 Aligned_cols=101 Identities=24% Similarity=0.407 Sum_probs=78.8
Q ss_pred HHHHHHHHHc-CCCCcEEEEccCCh-HHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc--CCCHHH
Q 040104 4 EEVEKIDKAM-GTGIDVSFDCAGFN-KTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY--KNTWPL 79 (105)
Q Consensus 4 ~~~~~~~~~~-~~g~d~vid~~g~~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~ 79 (105)
+..+.+++.+ +.++|+++|++|++ ..+..++++++++|+++.+|.......++...+..+..++.++... ...+.+
T Consensus 262 ~~~~~v~~~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 341 (384)
T cd08265 262 LSGEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSIAINGKIVYIGRAATTVPLHLEVLQVRRAQIVGAQGHSGHGIFPS 341 (384)
T ss_pred cHHHHHHHhcCCCCCCEEEECCCCcHHHHHHHHHHHHcCCEEEEECCCCCCCcccHHHHhhCceEEEEeeccCCcchHHH
Confidence 4566778888 56899999999974 4588999999999999999965444444555566777888887643 567999
Q ss_pred HHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 80 CLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 80 ~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
+++++++|++++..+++++|+++++
T Consensus 342 ~~~ll~~g~l~~~~~~~~~~~~~~~ 366 (384)
T cd08265 342 VIKLMASGKIDMTKIITARFPLEGI 366 (384)
T ss_pred HHHHHHcCCCChHHheEEEeeHHHH
Confidence 9999999999766567788998764
No 41
>PLN02702 L-idonate 5-dehydrogenase
Probab=99.24 E-value=1.1e-10 Score=77.96 Aligned_cols=88 Identities=92% Similarity=1.529 Sum_probs=72.0
Q ss_pred CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeeccCCCHHHHHHHHHcCCCCCCC
Q 040104 14 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKP 93 (105)
Q Consensus 14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~g~i~~~~ 93 (105)
++++|++||++|+...+..++++++++|+++.+|.......+....+..+++++.+++.....+.+++++++++++++++
T Consensus 252 ~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~ 331 (364)
T PLN02702 252 GGGIDVSFDCVGFNKTMSTALEATRAGGKVCLVGMGHNEMTVPLTPAAAREVDVVGVFRYRNTWPLCLEFLRSGKIDVKP 331 (364)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEccCCCCCcccHHHHHhCccEEEEeccChHHHHHHHHHHHcCCCCchH
Confidence 56899999999976679999999999999999996543334455567788999998876666889999999999997666
Q ss_pred ceeeeeeC
Q 040104 94 LVTHRFGF 101 (105)
Q Consensus 94 ~i~~~~~l 101 (105)
+++++|++
T Consensus 332 ~~~~~~~l 339 (364)
T PLN02702 332 LITHRFGF 339 (364)
T ss_pred heEEEecc
Confidence 78888766
No 42
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.24 E-value=5.2e-11 Score=78.66 Aligned_cols=100 Identities=22% Similarity=0.402 Sum_probs=79.5
Q ss_pred HHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHHH
Q 040104 5 EVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLE 82 (105)
Q Consensus 5 ~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~ 82 (105)
..+.+.+.+ +.++|+++|++|++..+..++++++++|+++.+|....+..++....+.+++++.+.... ...+.++++
T Consensus 225 ~~~~i~~~~~~~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (345)
T cd08287 225 AVARVRELTGGVGADAVLECVGTQESMEQAIAIARPGGRVGYVGVPHGGVELDVRELFFRNVGLAGGPAPVRRYLPELLD 304 (345)
T ss_pred HHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhccCCEEEEecccCCCCccCHHHHHhcceEEEEecCCcHHHHHHHHH
Confidence 445666666 458999999999877799999999999999999876544445554557889999887655 678999999
Q ss_pred HHHcCCCCCCCceeeeeeCCCC
Q 040104 83 FLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 83 ~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
++++|++++.++++++++++++
T Consensus 305 ~~~~~~l~~~~~~~~~~~l~~~ 326 (345)
T cd08287 305 DVLAGRINPGRVFDLTLPLDEV 326 (345)
T ss_pred HHHcCCCCHHHhEEeeecHHHH
Confidence 9999999765567778888764
No 43
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=99.23 E-value=5.2e-11 Score=78.66 Aligned_cols=98 Identities=16% Similarity=0.244 Sum_probs=72.8
Q ss_pred HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC-c-----cccchhhhhcCeEEEEeecc----
Q 040104 4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE-M-----TVPLTPAAAREVDVVGVFRY---- 73 (105)
Q Consensus 4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~-----~~~~~~~~~~~~~i~~~~~~---- 73 (105)
++.+.+++.+++|+|++||++|+.. +..++++++++|+++.+|..... . ..+...+.++++++.++...
T Consensus 209 ~~~~~i~~~~~~gvd~v~d~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~ 287 (338)
T cd08295 209 DLDAALKRYFPNGIDIYFDNVGGKM-LDAVLLNMNLHGRIAACGMISQYNLEWPEGVRNLLNIIYKRVKIQGFLVGDYLH 287 (338)
T ss_pred cHHHHHHHhCCCCcEEEEECCCHHH-HHHHHHHhccCcEEEEecccccCCCCCCCCccCHHHHhhccceeeEEEehhhHH
Confidence 4556677766678999999999855 99999999999999999864321 1 12334566788888886543
Q ss_pred --CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 74 --KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 74 --~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
...+.++++++.+|++++ .+..+|||+++
T Consensus 288 ~~~~~~~~~~~l~~~g~l~~--~~~~~~~l~~~ 318 (338)
T cd08295 288 RYPEFLEEMSGYIKEGKLKY--VEDIADGLESA 318 (338)
T ss_pred HHHHHHHHHHHHHHCCCeEc--eeecccCHHHH
Confidence 234788899999999954 45567898874
No 44
>PRK10083 putative oxidoreductase; Provisional
Probab=99.23 E-value=5.3e-11 Score=78.45 Aligned_cols=89 Identities=19% Similarity=0.381 Sum_probs=70.5
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeeccCCCHHHHHHHHHcCCCCCCCce
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLV 95 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~g~i~~~~~i 95 (105)
++|++||++|++..+..++++++++|+++.+|....+..++...+..+++++.++......++++++++++|++++.+++
T Consensus 228 ~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~ 307 (339)
T PRK10083 228 KPTLIIDAACHPSILEEAVTLASPAARIVLMGFSSEPSEIVQQGITGKELSIFSSRLNANKFPVVIDWLSKGLIDPEKLI 307 (339)
T ss_pred CCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCceecHHHHhhcceEEEEEecChhhHHHHHHHHHcCCCChHHhe
Confidence 46799999998767999999999999999999754433344444456778887776556789999999999999765567
Q ss_pred eeeeeCCCC
Q 040104 96 THRFGFSQK 104 (105)
Q Consensus 96 ~~~~~l~~~ 104 (105)
+++||++++
T Consensus 308 ~~~~~l~~~ 316 (339)
T PRK10083 308 THTFDFQHV 316 (339)
T ss_pred eeeecHHHH
Confidence 889998764
No 45
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.21 E-value=1.5e-10 Score=76.58 Aligned_cols=99 Identities=52% Similarity=0.922 Sum_probs=78.0
Q ss_pred HHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeeccCCCHHHHHHHH
Q 040104 6 VEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFL 84 (105)
Q Consensus 6 ~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v 84 (105)
.+.+.+.+ ++++|+++||+|+...+..++++++++|+++.+|.......+++..+.++++++.+++.....+.++++++
T Consensus 223 ~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 302 (343)
T cd05285 223 AEKIAELLGGKGPDVVIECTGAESCIQTAIYATRPGGTVVLVGMGKPEVTLPLSAASLREIDIRGVFRYANTYPTAIELL 302 (343)
T ss_pred HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCCccCHHHHhhCCcEEEEeccChHHHHHHHHHH
Confidence 55666666 46799999999987568999999999999999986554344455566778888888766667889999999
Q ss_pred HcCCCCCCCceeeeeeCCCC
Q 040104 85 RSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 85 ~~g~i~~~~~i~~~~~l~~~ 104 (105)
+++++.+.++++++|+++++
T Consensus 303 ~~~~l~~~~~~~~~~~l~~~ 322 (343)
T cd05285 303 ASGKVDVKPLITHRFPLEDA 322 (343)
T ss_pred HcCCCCchHhEEEEEeHHHH
Confidence 99988655567778888764
No 46
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=99.21 E-value=1.2e-10 Score=76.95 Aligned_cols=101 Identities=27% Similarity=0.438 Sum_probs=77.8
Q ss_pred HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC-CCccccchhhhhcCeEEEEeecc-CCCHHHH
Q 040104 4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-HEMTVPLTPAAAREVDVVGVFRY-KNTWPLC 80 (105)
Q Consensus 4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~ 80 (105)
++.+.+.+.+ ++++|++||++|+...+..++++++++|+++.+|... ..........+.+++++.+.... +..++++
T Consensus 222 ~~~~~l~~~~~~~~~dvvid~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (344)
T cd08284 222 EPVERVREATEGRGADVVLEAVGGAAALDLAFDLVRPGGVISSVGVHTAEEFPFPGLDAYNKNLTLRFGRCPVRSLFPEL 301 (344)
T ss_pred CHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEECcCCCCCccccHHHHhhcCcEEEEecCCcchhHHHH
Confidence 3456677777 4689999999998767999999999999999999754 22334444556788888766444 7889999
Q ss_pred HHHHHcCCCCCCCceeeeeeCCCC
Q 040104 81 LEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 81 ~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
++++.++++++.++++++|+++++
T Consensus 302 ~~~~~~~~i~~~~~~~~~~~~~~~ 325 (344)
T cd08284 302 LPLLESGRLDLEFLIDHRMPLEEA 325 (344)
T ss_pred HHHHHcCCCChHHhEeeeecHHHH
Confidence 999999999765567778887764
No 47
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=99.20 E-value=1.9e-10 Score=75.98 Aligned_cols=100 Identities=21% Similarity=0.473 Sum_probs=77.2
Q ss_pred HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc--CCCHHHH
Q 040104 4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY--KNTWPLC 80 (105)
Q Consensus 4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~ 80 (105)
++.+.+++.+ ++++|++|||+|+...+..++++++++|+++.+|..+....++...+.++++++.++... .+.+.++
T Consensus 219 ~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 298 (341)
T PRK05396 219 DLRDVMAELGMTEGFDVGLEMSGAPSAFRQMLDNMNHGGRIAMLGIPPGDMAIDWNKVIFKGLTIKGIYGREMFETWYKM 298 (341)
T ss_pred cHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCCcccHHHHhhcceEEEEEEccCccchHHHH
Confidence 3456677776 568999999999877799999999999999999976544455555667888888887533 4566778
Q ss_pred HHHHHcCCCCCCCceeeeeeCCCC
Q 040104 81 LEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 81 ~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
++++.++ +++.+++.++|+++++
T Consensus 299 ~~~~~~~-~~~~~~~~~~~~l~~~ 321 (341)
T PRK05396 299 SALLQSG-LDLSPIITHRFPIDDF 321 (341)
T ss_pred HHHHHcC-CChhHheEEEEeHHHH
Confidence 8999998 5446667788888764
No 48
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=99.20 E-value=8.1e-11 Score=77.35 Aligned_cols=97 Identities=22% Similarity=0.262 Sum_probs=70.8
Q ss_pred HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-----Cccc--cchhhhhcCeEEEEeecc----
Q 040104 5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-----EMTV--PLTPAAAREVDVVGVFRY---- 73 (105)
Q Consensus 5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-----~~~~--~~~~~~~~~~~i~~~~~~---- 73 (105)
+.+.+++.+++++|++||++|+.. +..++++++++|+++.+|.... ..+. ....+.++++++.+++..
T Consensus 196 ~~~~~~~~~~~gvdvv~d~~G~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 274 (325)
T TIGR02825 196 LEETLKKASPDGYDCYFDNVGGEF-SNTVIGQMKKFGRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEGFIVNRWQG 274 (325)
T ss_pred HHHHHHHhCCCCeEEEEECCCHHH-HHHHHHHhCcCcEEEEecchhhcccCCCCCCCcchHHHhhhcceEeEEEehhhhh
Confidence 334455555668999999999876 8999999999999999996431 1111 223456788888887632
Q ss_pred ---CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 74 ---KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 74 ---~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
...++++++++++|++++. +..+|||+++
T Consensus 275 ~~~~~~~~~~~~l~~~g~l~~~--~~~~~~l~~~ 306 (325)
T TIGR02825 275 EVRQKALKELLKWVLEGKIQYK--EYVIEGFENM 306 (325)
T ss_pred hhhHHHHHHHHHHHHCCCcccc--eeccccHHHH
Confidence 2367889999999999553 5557888874
No 49
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=99.20 E-value=9.2e-11 Score=75.90 Aligned_cols=91 Identities=18% Similarity=0.229 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCC---CCC-cc---ccchhhhhcCeEEEEeecc-
Q 040104 2 IAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG---HHE-MT---VPLTPAAAREVDVVGVFRY- 73 (105)
Q Consensus 2 ~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~---~~~-~~---~~~~~~~~~~~~i~~~~~~- 73 (105)
.+++.+++++.+++|+|+.||++|++. ++..+..|+..+|+..+|.- ..+ .+ -....++.+++++.|+...
T Consensus 205 ~~d~~~~L~~a~P~GIDvyfeNVGg~v-~DAv~~~ln~~aRi~~CG~IS~YN~~~~~~gp~~l~~l~~kr~~v~Gfiv~~ 283 (340)
T COG2130 205 AEDFAQALKEACPKGIDVYFENVGGEV-LDAVLPLLNLFARIPVCGAISQYNAPELPPGPRRLPLLMAKRLRVQGFIVAS 283 (340)
T ss_pred cccHHHHHHHHCCCCeEEEEEcCCchH-HHHHHHhhccccceeeeeehhhcCCCCCCCCcchhhHHHhhhheeEEEEech
Confidence 367889999999999999999999987 99999999999999999962 222 11 1233456789999999873
Q ss_pred ------CCCHHHHHHHHHcCCCCCCC
Q 040104 74 ------KNTWPLCLEFLRSGKIDIKP 93 (105)
Q Consensus 74 ------~~~~~~~~~~v~~g~i~~~~ 93 (105)
.+..++|..|+.+|+|+.+.
T Consensus 284 ~~~~~~~e~~~~l~~wv~~GKi~~~e 309 (340)
T COG2130 284 DYDQRFPEALRELGGWVKEGKIQYRE 309 (340)
T ss_pred hhhhhhHHHHHHHHHHHHcCceeeEe
Confidence 35678899999999996654
No 50
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=99.19 E-value=1.1e-10 Score=78.66 Aligned_cols=97 Identities=18% Similarity=0.208 Sum_probs=77.1
Q ss_pred HHHHHHHHcC-C-CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-CccccchhhhhcCeEEEEeecc-CCCHHHH
Q 040104 5 EVEKIDKAMG-T-GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAAREVDVVGVFRY-KNTWPLC 80 (105)
Q Consensus 5 ~~~~~~~~~~-~-g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~ 80 (105)
+.+.+++.++ . ++|++|||+|+.. +..++++++++|+++.+|.... ...++...+..++.++.+++.. ...+.++
T Consensus 272 ~~~~v~~l~~~~~g~d~vid~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~l~~~~~~i~g~~~~~~~~~~~~ 350 (393)
T cd08246 272 FGKAIWDILGGREDPDIVFEHPGRAT-FPTSVFVCDRGGMVVICAGTTGYNHTYDNRYLWMRQKRIQGSHFANDREAAEA 350 (393)
T ss_pred HHHHHHHHhCCCCCCeEEEECCchHh-HHHHHHHhccCCEEEEEcccCCCCCCCcHHHHhhheeEEEecccCcHHHHHHH
Confidence 4466777774 4 8999999999855 8999999999999999986432 2445666677788888888666 5688999
Q ss_pred HHHHHcCCCCCCCceeeeeeCCCC
Q 040104 81 LEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 81 ~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
+++++++.++ +.++++|+++++
T Consensus 351 ~~~~~~~~l~--~~~~~~~~l~~~ 372 (393)
T cd08246 351 NRLVMKGRID--PCLSKVFSLDET 372 (393)
T ss_pred HHHHHcCCce--eeeeEEEeHHHH
Confidence 9999999884 557889998864
No 51
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=99.18 E-value=1.5e-10 Score=75.81 Aligned_cols=89 Identities=28% Similarity=0.428 Sum_probs=72.8
Q ss_pred CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeeccCCCHHHHHHHHHcCCCCCCC
Q 040104 14 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKP 93 (105)
Q Consensus 14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~g~i~~~~ 93 (105)
++++|+++||+|+...+..++++++++|+++..|.......+++..+..++.++.+++.. .++++++++++|++++.+
T Consensus 212 ~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~l~~~~ 289 (319)
T cd08242 212 GGGFDVVVEATGSPSGLELALRLVRPRGTVVLKSTYAGPASFDLTKAVVNEITLVGSRCG--PFAPALRLLRKGLVDVDP 289 (319)
T ss_pred CCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccCCCCccCHHHheecceEEEEEecc--cHHHHHHHHHcCCCChhh
Confidence 457999999999876689999999999999998765545556666677888888877543 388999999999997767
Q ss_pred ceeeeeeCCCC
Q 040104 94 LVTHRFGFSQK 104 (105)
Q Consensus 94 ~i~~~~~l~~~ 104 (105)
+++++||++++
T Consensus 290 ~~~~~~~l~~~ 300 (319)
T cd08242 290 LITAVYPLEEA 300 (319)
T ss_pred ceEEEEeHHHH
Confidence 78889998874
No 52
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=99.17 E-value=2.2e-10 Score=75.73 Aligned_cols=101 Identities=28% Similarity=0.578 Sum_probs=76.4
Q ss_pred HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccch-hhhhcCeEEEEeecc--CCCHHH
Q 040104 4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLT-PAAAREVDVVGVFRY--KNTWPL 79 (105)
Q Consensus 4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~-~~~~~~~~i~~~~~~--~~~~~~ 79 (105)
++.+.+.+.+ ++++|+++||+|+...+..++++++++|+++.+|.......++.. .+.+++.++.+.+.. .+.+.+
T Consensus 217 ~~~~~l~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (340)
T TIGR00692 217 DVVKEVADLTDGEGVDVFLEMSGAPKALEQGLQAVTPGGRVSLLGLPPGKVTIDFTNKVIFKGLTIYGITGRHMFETWYT 296 (340)
T ss_pred CHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhcCCCEEEEEccCCCCcccchhhhhhhcceEEEEEecCCchhhHHH
Confidence 3456666666 468999999999877789999999999999999975433334444 466788888776532 456788
Q ss_pred HHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 80 CLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 80 ~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
+++++++|++++.+++++.++++++
T Consensus 297 ~~~~l~~~~l~~~~~~~~~~~l~~~ 321 (340)
T TIGR00692 297 VSRLIQSGKLDLDPIITHKFKFDKF 321 (340)
T ss_pred HHHHHHcCCCChHHheeeeeeHHHH
Confidence 9999999999755667778888764
No 53
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=99.17 E-value=4.4e-10 Score=73.51 Aligned_cols=84 Identities=26% Similarity=0.505 Sum_probs=69.7
Q ss_pred HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC-CCccccchhhhhcCeEEEEeecc-CCCHHHH
Q 040104 4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-HEMTVPLTPAAAREVDVVGVFRY-KNTWPLC 80 (105)
Q Consensus 4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~ 80 (105)
++.+.+.+.+ ++++|.++|++|+...+..++++++++|+++.+|... ....+++..++++++++.|++.+ +++++++
T Consensus 220 ~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~ 299 (306)
T cd08258 220 DLAELVNEITDGDGADVVIECSGAVPALEQALELLRKGGRIVQVGIFGPLAASIDVERIIQKELSVIGSRSSTPASWETA 299 (306)
T ss_pred CHHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccCCCCcccCHHHHhhcCcEEEEEecCchHhHHHH
Confidence 3445566666 4689999999987666899999999999999999754 34566777788899999999988 8899999
Q ss_pred HHHHHcC
Q 040104 81 LEFLRSG 87 (105)
Q Consensus 81 ~~~v~~g 87 (105)
++++++|
T Consensus 300 ~~~~~~~ 306 (306)
T cd08258 300 LRLLASG 306 (306)
T ss_pred HHHHhcC
Confidence 9999876
No 54
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=99.17 E-value=2.5e-10 Score=76.85 Aligned_cols=100 Identities=26% Similarity=0.429 Sum_probs=77.9
Q ss_pred HHHHHHHHc-CCCCcEEEEccCCh---------------------HHHHHHHHhhhcCCEEEEEcCCCC-Cccccchhhh
Q 040104 5 EVEKIDKAM-GTGIDVSFDCAGFN---------------------KTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAA 61 (105)
Q Consensus 5 ~~~~~~~~~-~~g~d~vid~~g~~---------------------~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~ 61 (105)
+.+.+++.+ ++++|++||++|+. ..++.++++++++|+++.+|.... ...++...++
T Consensus 242 ~~~~l~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~ 321 (386)
T cd08283 242 VVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGVYGGTVNKFPIGAAM 321 (386)
T ss_pred HHHHHHHHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcCCCCCcCccCHHHHH
Confidence 566677777 45899999999853 358899999999999999997543 2334544567
Q ss_pred hcCeEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 62 AREVDVVGVFRY-KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 62 ~~~~~i~~~~~~-~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
.+++++.++... ...+.++++++++|++++.++++++|+++++
T Consensus 322 ~~~~~i~~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~l~~~ 365 (386)
T cd08283 322 NKGLTLRMGQTHVQRYLPRLLELIESGELDPSFIITHRLPLEDA 365 (386)
T ss_pred hCCcEEEeccCCchHHHHHHHHHHHcCCCChhHceEEEecHHHH
Confidence 788888887655 6789999999999999766667778998764
No 55
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=99.16 E-value=2e-10 Score=76.73 Aligned_cols=99 Identities=26% Similarity=0.400 Sum_probs=76.1
Q ss_pred HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC--CCccccchhhhhcCeEEEEeecc----CCCHH
Q 040104 5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH--HEMTVPLTPAAAREVDVVGVFRY----KNTWP 78 (105)
Q Consensus 5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~--~~~~~~~~~~~~~~~~i~~~~~~----~~~~~ 78 (105)
..+.+.+.++.++|+++||+|.+..+..++++++++|+++.+|... ....+++..+..++.++.++... .+.++
T Consensus 243 ~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (365)
T cd08278 243 LVAAIREITGGGVDYALDTTGVPAVIEQAVDALAPRGTLALVGAPPPGAEVTLDVNDLLVSGKTIRGVIEGDSVPQEFIP 322 (365)
T ss_pred HHHHHHHHhCCCCcEEEECCCCcHHHHHHHHHhccCCEEEEeCcCCCCCccccCHHHHhhcCceEEEeecCCcChHHHHH
Confidence 4556666666689999999998777999999999999999999753 33456666666788888877543 35678
Q ss_pred HHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 79 LCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 79 ~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
++++++++|++++.++++ +|+++++
T Consensus 323 ~~~~~l~~g~l~~~~~~~-~~~l~~~ 347 (365)
T cd08278 323 RLIELYRQGKFPFDKLVT-FYPFEDI 347 (365)
T ss_pred HHHHHHHcCCCChHHheE-EecHHHH
Confidence 899999999986544554 7888764
No 56
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=99.14 E-value=4e-10 Score=74.71 Aligned_cols=98 Identities=27% Similarity=0.369 Sum_probs=76.0
Q ss_pred HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHHHH
Q 040104 5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLEF 83 (105)
Q Consensus 5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~ 83 (105)
..+.+.+..++++|++||++|....+..++++++++|+++.+|.......++...+.+++.++.+++.. .+++.+++++
T Consensus 232 ~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l 311 (350)
T cd08240 232 AAKRIIKAAGGGVDAVIDFVNNSATASLAFDILAKGGKLVLVGLFGGEATLPLPLLPLRALTIQGSYVGSLEELRELVAL 311 (350)
T ss_pred HHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhcCCeEEEECCCCCCCcccHHHHhhcCcEEEEcccCCHHHHHHHHHH
Confidence 345566666448999999999877799999999999999999876544444555556788999888766 5788999999
Q ss_pred HHcCCCCCCCceeeeeeCCCC
Q 040104 84 LRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 84 v~~g~i~~~~~i~~~~~l~~~ 104 (105)
+++|.++ +...++|+++++
T Consensus 312 l~~~~i~--~~~~~~~~~~~~ 330 (350)
T cd08240 312 AKAGKLK--PIPLTERPLSDV 330 (350)
T ss_pred HHcCCCc--cceeeEEcHHHH
Confidence 9999985 345567888754
No 57
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.14 E-value=4.2e-10 Score=74.25 Aligned_cols=96 Identities=22% Similarity=0.388 Sum_probs=72.1
Q ss_pred HHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHHHHHHc
Q 040104 9 IDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRS 86 (105)
Q Consensus 9 ~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~ 86 (105)
+.+.+ ++++|+++|++|+...+..++++++++|+++.+|.......+.......++.++.++... .+.+.++++++++
T Consensus 225 ~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 304 (341)
T cd08262 225 ELARAGGPKPAVIFECVGAPGLIQQIIEGAPPGGRIVVVGVCMESDNIEPALAIRKELTLQFSLGYTPEEFADALDALAE 304 (341)
T ss_pred HHHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCCCCccCHHHHhhcceEEEEEecccHHHHHHHHHHHHc
Confidence 33444 468999999999864589999999999999999975432223322335677888776555 5678999999999
Q ss_pred CCCCCCCceeeeeeCCCC
Q 040104 87 GKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 87 g~i~~~~~i~~~~~l~~~ 104 (105)
|++++.++++++|+++++
T Consensus 305 g~i~~~~~i~~~~~l~~~ 322 (341)
T cd08262 305 GKVDVAPMVTGTVGLDGV 322 (341)
T ss_pred CCCChHHheEEEeeHHHH
Confidence 999766667888998764
No 58
>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A.
Probab=99.13 E-value=3.6e-12 Score=73.46 Aligned_cols=83 Identities=22% Similarity=0.362 Sum_probs=53.0
Q ss_pred CCCCcEEEEccC--ChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhh--hhcCeEEEEeec------cCCCHHHHHHH
Q 040104 14 GTGIDVSFDCAG--FNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA--AAREVDVVGVFR------YKNTWPLCLEF 83 (105)
Q Consensus 14 ~~g~d~vid~~g--~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~--~~~~~~i~~~~~------~~~~~~~~~~~ 83 (105)
++++|+|||++| ....+..+.++| ++|+++.+|. ....... .....+...... ..+.+++++++
T Consensus 17 ~~~~D~ViD~~g~~~~~~~~~~~~~l-~~G~~v~i~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l 90 (127)
T PF13602_consen 17 PGGVDVVIDTVGQTGESLLDASRKLL-PGGRVVSIGG-----DLPSFARRLKGRSIRYSFLFSVDPNAIRAEALEELAEL 90 (127)
T ss_dssp TS-EEEEEESS-CCHHHCGGGCCCTE-EEEEEEEE-S-----HHHHHHHHHHCHHCEEECCC-H--HHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCccHHHHHHHHHHC-CCCEEEEECC-----cccchhhhhcccceEEEEEEecCCCchHHHHHHHHHHH
Confidence 579999999999 665447777888 9999999973 1111111 122333333321 13459999999
Q ss_pred HHcCCCCCCCceeeeeeCCCC
Q 040104 84 LRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 84 v~~g~i~~~~~i~~~~~l~~~ 104 (105)
+++|++ ++.|+++|||+++
T Consensus 91 ~~~G~l--~~~i~~~f~l~~~ 109 (127)
T PF13602_consen 91 VAEGKL--KPPIDRVFPLEEA 109 (127)
T ss_dssp HHTTSS-----EEEEEEGGGH
T ss_pred HHCCCe--EEeeccEECHHHH
Confidence 999999 7789999999985
No 59
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=99.12 E-value=6.2e-10 Score=73.62 Aligned_cols=101 Identities=26% Similarity=0.481 Sum_probs=77.7
Q ss_pred HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC---ccccchhhhhcCeEEEEeecc-CCCHHH
Q 040104 4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE---MTVPLTPAAAREVDVVGVFRY-KNTWPL 79 (105)
Q Consensus 4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~---~~~~~~~~~~~~~~i~~~~~~-~~~~~~ 79 (105)
+....+.+..++++|.+|||+|+...+..++++++++|+++.+|..... ..+++..+..++.++.++... ...+++
T Consensus 221 ~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (345)
T cd08260 221 DVAAAVRDLTGGGAHVSVDALGIPETCRNSVASLRKRGRHVQVGLTLGEEAGVALPMDRVVARELEIVGSHGMPAHRYDA 300 (345)
T ss_pred hHHHHHHHHhCCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEeCCcCCCCCccccCHHHHhhcccEEEeCCcCCHHHHHH
Confidence 4455566666448999999999766689999999999999999975432 344555556788898887665 678999
Q ss_pred HHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 80 CLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 80 ~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
+++++++|++++.++++++++++++
T Consensus 301 ~~~l~~~~~i~~~~~~~~~~~~~~~ 325 (345)
T cd08260 301 MLALIASGKLDPEPLVGRTISLDEA 325 (345)
T ss_pred HHHHHHcCCCChhhheeEEecHHHH
Confidence 9999999999765556778888764
No 60
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=99.11 E-value=5.2e-10 Score=75.03 Aligned_cols=101 Identities=19% Similarity=0.293 Sum_probs=76.7
Q ss_pred HHHHHHHHHcCCCCcEEEEccCChH-----------HHHHHHHhhhcCCEEEEEcCCCC-C------------ccccchh
Q 040104 4 EEVEKIDKAMGTGIDVSFDCAGFNK-----------TMSTALSATRAGGKVCLVGMGHH-E------------MTVPLTP 59 (105)
Q Consensus 4 ~~~~~~~~~~~~g~d~vid~~g~~~-----------~~~~~~~~l~~~G~~v~~g~~~~-~------------~~~~~~~ 59 (105)
+..+.+.+.+++++|+++||+|... .++.++++++++|+++.+|.... . ..++...
T Consensus 231 ~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (375)
T cd08282 231 DPVEQILGLEPGGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVGVYVAEDPGAGDAAAKQGELSFDFGL 310 (375)
T ss_pred cHHHHHHHhhCCCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEeccCCcccccccccccCccccccHHH
Confidence 3456667666668999999999863 48999999999999998886431 1 2234445
Q ss_pred hhhcCeEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 60 AAAREVDVVGVFRY-KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 60 ~~~~~~~i~~~~~~-~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
+..++.++.+.... +..+++++++++++++++..+++++|+++++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~ 356 (375)
T cd08282 311 LWAKGLSFGTGQAPVKKYNRQLRDLILAGRAKPSFVVSHVISLEDA 356 (375)
T ss_pred HHhcCcEEEEecCCchhhHHHHHHHHHcCCCChHHcEEEEeeHHHH
Confidence 56678887777655 6788999999999999765568889998864
No 61
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=99.11 E-value=3e-10 Score=74.46 Aligned_cols=98 Identities=22% Similarity=0.293 Sum_probs=71.5
Q ss_pred HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC---Cc----cccchhhhhcCeEEEEeecc---
Q 040104 4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH---EM----TVPLTPAAAREVDVVGVFRY--- 73 (105)
Q Consensus 4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~---~~----~~~~~~~~~~~~~i~~~~~~--- 73 (105)
++.+++++.+++++|++||++|+.. +..++++++++|+++.+|.... +. ......+.++++++.++...
T Consensus 199 ~~~~~v~~~~~~gvd~vld~~g~~~-~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 277 (329)
T cd08294 199 SLEEALKEAAPDGIDCYFDNVGGEF-SSTVLSHMNDFGRVAVCGSISTYNDKEPKKGPYVQETIIFKQLKMEGFIVYRWQ 277 (329)
T ss_pred cHHHHHHHHCCCCcEEEEECCCHHH-HHHHHHhhccCCEEEEEcchhccCCCCCCcCcccHHHHhhhcceEEEEEhhhhH
Confidence 4556777777778999999999855 8999999999999999985321 10 12233467788888887543
Q ss_pred ---CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 74 ---KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 74 ---~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
...+.++++++++|++++. ...+|+++++
T Consensus 278 ~~~~~~~~~~~~l~~~g~i~~~--~~~~~~l~~~ 309 (329)
T cd08294 278 DRWPEALKQLLKWIKEGKLKYR--EHVTEGFENM 309 (329)
T ss_pred HHHHHHHHHHHHHHHCCCCcCC--cccccCHHHH
Confidence 2346788999999999654 3446888764
No 62
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.10 E-value=8.4e-10 Score=72.98 Aligned_cols=97 Identities=27% Similarity=0.534 Sum_probs=74.0
Q ss_pred HHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccch-hhhhcCeEEEEeecc--CCCHHHHHHH
Q 040104 8 KIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLT-PAAAREVDVVGVFRY--KNTWPLCLEF 83 (105)
Q Consensus 8 ~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~-~~~~~~~~i~~~~~~--~~~~~~~~~~ 83 (105)
.+.+.+ ++++|++|||+|.......++++++++|+++.+|.......++.. .+.++++++.+.... ...+.+++++
T Consensus 222 ~~~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (341)
T cd05281 222 EVKSVTDGTGVDVVLEMSGNPKAIEQGLKALTPGGRVSILGLPPGPVDIDLNNLVIFKGLTVQGITGRKMFETWYQVSAL 301 (341)
T ss_pred HHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEccCCCCcccccchhhhccceEEEEEecCCcchhHHHHHHH
Confidence 566666 468999999999877789999999999999999865443333333 356788888776533 5678899999
Q ss_pred HHcCCCCCCCceeeeeeCCCC
Q 040104 84 LRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 84 v~~g~i~~~~~i~~~~~l~~~ 104 (105)
+.+|.+++.++++.+++++++
T Consensus 302 l~~~~l~~~~~~~~~~~~~~~ 322 (341)
T cd05281 302 LKSGKVDLSPVITHKLPLEDF 322 (341)
T ss_pred HHcCCCChhHheEEEecHHHH
Confidence 999998766667777887654
No 63
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.10 E-value=7.8e-10 Score=71.92 Aligned_cols=101 Identities=19% Similarity=0.374 Sum_probs=77.2
Q ss_pred HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC-CCccccchhhhhcCeEEEEeecc-----CCC
Q 040104 4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-HEMTVPLTPAAAREVDVVGVFRY-----KNT 76 (105)
Q Consensus 4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~-----~~~ 76 (105)
++.+.+.+.+ +.++|+++||+|....+..++++++++|+++.+|... .+..+++..+.+++.++.++... .+.
T Consensus 185 ~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (312)
T cd08269 185 AIVERVRELTGGAGADVVIEAVGHQWPLDLAGELVAERGRLVIFGYHQDGPRPVPFQTWNWKGIDLINAVERDPRIGLEG 264 (312)
T ss_pred CHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEccCCCCCcccCHHHHhhcCCEEEEecccCccchhhH
Confidence 3556677777 4689999999988766899999999999999998653 23445555667888888776543 357
Q ss_pred HHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 77 WPLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 77 ~~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
++++++++++|++++..+++++|+++++
T Consensus 265 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 292 (312)
T cd08269 265 MREAVKLIADGRLDLGSLLTHEFPLEEL 292 (312)
T ss_pred HHHHHHHHHcCCCCchhheeeeecHHHH
Confidence 8999999999999654456678887754
No 64
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=99.10 E-value=6.8e-10 Score=73.26 Aligned_cols=95 Identities=16% Similarity=0.186 Sum_probs=75.1
Q ss_pred HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHHHH
Q 040104 5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLEF 83 (105)
Q Consensus 5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~ 83 (105)
+.+.+++. +++|+++|++|....+..++++++++|+++.+|......+++...++.+++++.++..+ ..++.+++++
T Consensus 219 ~~~~~~~~--~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 296 (333)
T cd08296 219 VAEALQEL--GGAKLILATAPNAKAISALVGGLAPRGKLLILGAAGEPVAVSPLQLIMGRKSIHGWPSGTALDSEDTLKF 296 (333)
T ss_pred HHHHHHhc--CCCCEEEECCCchHHHHHHHHHcccCCEEEEEecCCCCCCcCHHHHhhcccEEEEeCcCCHHHHHHHHHH
Confidence 33444444 47999999998666799999999999999999976555556666677899999998766 6678899999
Q ss_pred HHcCCCCCCCceeeeeeCCCC
Q 040104 84 LRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 84 v~~g~i~~~~~i~~~~~l~~~ 104 (105)
++++++ +++++ +||++|+
T Consensus 297 ~~~~~l--~~~v~-~~~~~~~ 314 (333)
T cd08296 297 SALHGV--RPMVE-TFPLEKA 314 (333)
T ss_pred HHhCCC--CceEE-EEEHHHH
Confidence 999988 55564 7999875
No 65
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=99.10 E-value=1e-09 Score=71.77 Aligned_cols=98 Identities=20% Similarity=0.242 Sum_probs=74.9
Q ss_pred HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC-CCccccchhhhhcCeEEEEeecc--------
Q 040104 4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-HEMTVPLTPAAAREVDVVGVFRY-------- 73 (105)
Q Consensus 4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~-------- 73 (105)
++.+.+.+.+ +.++|++|||+|+.. ...++++++++|+++.+|... ....+++.....++.++.++...
T Consensus 195 ~~~~~i~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (324)
T cd08292 195 GWQDKVREAAGGAPISVALDSVGGKL-AGELLSLLGEGGTLVSFGSMSGEPMQISSGDLIFKQATVRGFWGGRWSQEMSV 273 (324)
T ss_pred hHHHHHHHHhCCCCCcEEEECCCChh-HHHHHHhhcCCcEEEEEecCCCCCCcCCHHHHhhCCCEEEEEEcHHhhhhcCH
Confidence 3556677777 469999999999975 899999999999999999653 23345555567789998887643
Q ss_pred ---CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 74 ---KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 74 ---~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
...+.++++++.+|++++ .+.++|+++++
T Consensus 274 ~~~~~~~~~~~~l~~~g~i~~--~~~~~~~~~~~ 305 (324)
T cd08292 274 EYRKRMIAELLTLALKGQLLL--PVEAVFDLGDA 305 (324)
T ss_pred HHHHHHHHHHHHHHHCCCccC--ccccEecHHHH
Confidence 235788999999999954 34678888764
No 66
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.10 E-value=3.1e-10 Score=75.05 Aligned_cols=91 Identities=22% Similarity=0.378 Sum_probs=73.2
Q ss_pred HHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC-ccccchhhhhcCeEEEEeecc-CCCHHHHHHHHHcC
Q 040104 11 KAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE-MTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRSG 87 (105)
Q Consensus 11 ~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~g 87 (105)
+.+ +.++|++||++|+.. +..++++++++|+++.+|....+ ..+++..++.++.++.++... ...+.++++++.++
T Consensus 237 ~~~~~~~~d~vi~~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 315 (350)
T cd08274 237 KALGGEPVDVVADVVGGPL-FPDLLRLLRPGGRYVTAGAIAGPVVELDLRTLYLKDLTLFGSTLGTREVFRRLVRYIEEG 315 (350)
T ss_pred HhhCCCCCcEEEecCCHHH-HHHHHHHhccCCEEEEecccCCccccCCHHHhhhcceEEEEeecCCHHHHHHHHHHHHCC
Confidence 344 568999999999865 89999999999999999865433 456666667889999988776 67899999999999
Q ss_pred CCCCCCceeeeeeCCCC
Q 040104 88 KIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 88 ~i~~~~~i~~~~~l~~~ 104 (105)
++ +++++++|+++++
T Consensus 316 ~l--~~~~~~~~~~~~~ 330 (350)
T cd08274 316 EI--RPVVAKTFPLSEI 330 (350)
T ss_pred Cc--ccccccccCHHHH
Confidence 98 4557778887753
No 67
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=99.09 E-value=5.2e-10 Score=75.59 Aligned_cols=97 Identities=18% Similarity=0.210 Sum_probs=75.5
Q ss_pred HHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-CccccchhhhhcCeEEEEeecc-CCCHHHHH
Q 040104 5 EVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAAREVDVVGVFRY-KNTWPLCL 81 (105)
Q Consensus 5 ~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~ 81 (105)
+.+.+.+.+ ++++|++|||+|+.. +..++++++++|+++.+|.... ...++...+..++.++.++... ..++.+++
T Consensus 268 ~~~~~~~~~~~~g~d~vld~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (398)
T TIGR01751 268 FGKRIRELTGGEDPDIVFEHPGRAT-FPTSVFVCRRGGMVVICGGTTGYNHDYDNRYLWMRQKRIQGSHFANLREAWEAN 346 (398)
T ss_pred HHHHHHHHcCCCCceEEEECCcHHH-HHHHHHhhccCCEEEEEccccCCCCCcCHHHHhhcccEEEccccCcHHHHHHHH
Confidence 345566777 468999999999755 9999999999999999997543 2445556666788888887655 45678899
Q ss_pred HHHHcCCCCCCCceeeeeeCCCC
Q 040104 82 EFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 82 ~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
+++.+++++ +.++++++++++
T Consensus 347 ~~l~~~~l~--~~~~~~~~l~~~ 367 (398)
T TIGR01751 347 RLVAKGRID--PTLSKVYPLEEI 367 (398)
T ss_pred HHHHCCCcc--cceeeEEcHHHH
Confidence 999999984 557788998764
No 68
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=99.09 E-value=9.1e-10 Score=73.55 Aligned_cols=101 Identities=28% Similarity=0.544 Sum_probs=76.9
Q ss_pred HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC--CccccchhhhhcCeEEEEeecc--CCCHH
Q 040104 4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH--EMTVPLTPAAAREVDVVGVFRY--KNTWP 78 (105)
Q Consensus 4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~--~~~~~ 78 (105)
+..+++++.+ +.++|+++|++|+......++++++++|+++.+|.... ...++...++.+++++.+++.. +..++
T Consensus 243 ~~~~~l~~~~~~~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (367)
T cd08263 243 DAVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDGGRAVVVGLAPGGATAEIPITRLVRRGIKIIGSYGARPRQDLP 322 (367)
T ss_pred cHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEEccCCCCCccccCHHHHhhCCeEEEecCCCCcHHHHH
Confidence 3455667666 56899999999987458999999999999999986542 2345555555788888886544 36789
Q ss_pred HHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 79 LCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 79 ~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
+++++++++++++.+++++.|+++++
T Consensus 323 ~~~~ll~~~~l~~~~~~~~~~~~~~~ 348 (367)
T cd08263 323 ELVGLAASGKLDPEALVTHKYKLEEI 348 (367)
T ss_pred HHHHHHHcCCCCcccceeEEecHHHH
Confidence 99999999999765557778887753
No 69
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=99.07 E-value=1.3e-09 Score=71.87 Aligned_cols=100 Identities=30% Similarity=0.551 Sum_probs=75.8
Q ss_pred HHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHHH
Q 040104 5 EVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLE 82 (105)
Q Consensus 5 ~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~ 82 (105)
+.+.+.+.+ +.++|+++||+|+...+..++++++++|+++.+|....+..++...+..+++++.++... .+.+.++++
T Consensus 215 ~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (337)
T cd08261 215 VAARLRELTDGEGADVVIDATGNPASMEEAVELVAHGGRVVLVGLSKGPVTFPDPEFHKKELTILGSRNATREDFPDVID 294 (337)
T ss_pred HHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEcCCCCCCccCHHHHHhCCCEEEEeccCChhhHHHHHH
Confidence 446666666 458999999998876689999999999999999865544444544556678888776544 668899999
Q ss_pred HHHcCCCCCCCceeeeeeCCCC
Q 040104 83 FLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 83 ~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
++++|.+++.+.+..+|+++++
T Consensus 295 l~~~~~i~~~~~~~~~~~~~~~ 316 (337)
T cd08261 295 LLESGKVDPEALITHRFPFEDV 316 (337)
T ss_pred HHHcCCCChhhheEEEeeHHHH
Confidence 9999999653356668887653
No 70
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=99.07 E-value=1.3e-09 Score=71.90 Aligned_cols=100 Identities=30% Similarity=0.486 Sum_probs=76.5
Q ss_pred HHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC--CccccchhhhhcCeEEEEeecc-CCCHHHH
Q 040104 5 EVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH--EMTVPLTPAAAREVDVVGVFRY-KNTWPLC 80 (105)
Q Consensus 5 ~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~ 80 (105)
+.+.+++.+ ++++|+++||+|+...+..++++++++|+++.+|.... ...++.....++++++.++... ...+.++
T Consensus 222 ~~~~i~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 301 (343)
T cd08235 222 LVEKVRELTDGRGADVVIVATGSPEAQAQALELVRKGGRILFFGGLPKGSTVNIDPNLIHYREITITGSYAASPEDYKEA 301 (343)
T ss_pred HHHHHHHHhCCcCCCEEEECCCChHHHHHHHHHhhcCCEEEEEeccCCCCCcccCHHHHhhCceEEEEEecCChhhHHHH
Confidence 445666666 45899999999987668999999999999999986432 2344445567788888877665 6788999
Q ss_pred HHHHHcCCCCCCCceeeeeeCCCC
Q 040104 81 LEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 81 ~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
++++.++++++.+.+..+|+++++
T Consensus 302 ~~l~~~~~l~~~~~~~~~~~~~~~ 325 (343)
T cd08235 302 LELIASGKIDVKDLITHRFPLEDI 325 (343)
T ss_pred HHHHHcCCCChHHheeeEeeHHHH
Confidence 999999998654456667887753
No 71
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=99.06 E-value=1.1e-09 Score=72.33 Aligned_cols=90 Identities=32% Similarity=0.640 Sum_probs=71.5
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeeccCCCHHHHHHHHHcCCCCCCCc
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPL 94 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~g~i~~~~~ 94 (105)
+++|+++|++|+...+...+++|+++|+++.+|....+...+...+..+++++.+.......+.++++++++|++++.++
T Consensus 230 ~~vd~vld~~g~~~~~~~~~~~L~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 309 (339)
T cd08232 230 GDFDVVFEASGAPAALASALRVVRPGGTVVQVGMLGGPVPLPLNALVAKELDLRGSFRFDDEFAEAVRLLAAGRIDVRPL 309 (339)
T ss_pred CCccEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCccCcHHHHhhcceEEEEEecCHHHHHHHHHHHHcCCCCchhh
Confidence 46999999999766689999999999999999864433334444456788888887666678899999999999876666
Q ss_pred eeeeeeCCCC
Q 040104 95 VTHRFGFSQK 104 (105)
Q Consensus 95 i~~~~~l~~~ 104 (105)
++++|+++++
T Consensus 310 ~~~~~~~~~~ 319 (339)
T cd08232 310 ITAVFPLEEA 319 (339)
T ss_pred eeEEecHHHH
Confidence 7788988764
No 72
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=99.05 E-value=1.7e-09 Score=72.20 Aligned_cols=101 Identities=29% Similarity=0.530 Sum_probs=77.2
Q ss_pred HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC--CCccccchhhhhcCeEEEEeecc----CCC
Q 040104 4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH--HEMTVPLTPAAAREVDVVGVFRY----KNT 76 (105)
Q Consensus 4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~--~~~~~~~~~~~~~~~~i~~~~~~----~~~ 76 (105)
+...++++.+ ++++|+++|++|+...+..++++++++|+++.+|... ....++...+..++..+.++... ...
T Consensus 238 ~~~~~l~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (363)
T cd08279 238 DAVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKGGTAVVVGMGPPGETVSLPALELFLSEKRLQGSLYGSANPRRD 317 (363)
T ss_pred cHHHHHHHHcCCCCCCEEEEcCCChHHHHHHHHHhhcCCeEEEEecCCCCcccccCHHHHhhcCcEEEEEEecCcCcHHH
Confidence 3445666666 5689999999997666899999999999999998654 23445555566677777776532 567
Q ss_pred HHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 77 WPLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 77 ~~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
++++++++.+|++++.++++++|+++++
T Consensus 318 ~~~~~~l~~~g~l~~~~~~~~~~~~~~~ 345 (363)
T cd08279 318 IPRLLDLYRAGRLKLDELVTRRYSLDEI 345 (363)
T ss_pred HHHHHHHHHcCCCCcceeEEEEEcHHHH
Confidence 8899999999999765567778988764
No 73
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=99.05 E-value=1.8e-09 Score=72.52 Aligned_cols=100 Identities=23% Similarity=0.331 Sum_probs=73.9
Q ss_pred HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhh-hcCCEEEEEcCCCCCccccchh-hhhcCeEEEEeecc----CCCHH
Q 040104 5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSAT-RAGGKVCLVGMGHHEMTVPLTP-AAAREVDVVGVFRY----KNTWP 78 (105)
Q Consensus 5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~i~~~~~~----~~~~~ 78 (105)
..+.+.+.+++++|+++||+|++..+..++..+ +++|+++.+|.......+++.. ++.++.++.++... +..+.
T Consensus 249 ~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 328 (373)
T cd08299 249 IQEVLTEMTDGGVDFSFEVIGRLDTMKAALASCHEGYGVSVIVGVPPSSQNLSINPMLLLTGRTWKGAVFGGWKSKDSVP 328 (373)
T ss_pred HHHHHHHHhCCCCeEEEECCCCcHHHHHHHHhhccCCCEEEEEccCCCCceeecCHHHHhcCCeEEEEEecCCccHHHHH
Confidence 455566666668999999999877688878766 5789999999754322333333 24567888887654 35778
Q ss_pred HHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 79 LCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 79 ~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
++++.+.++.++++++++++||++++
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~l~e~ 354 (373)
T cd08299 329 KLVADYMAKKFNLDPLITHTLPFEKI 354 (373)
T ss_pred HHHHHHHcCCCCchhheeeeecHHHH
Confidence 88888888888778788899999864
No 74
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=99.05 E-value=7.6e-10 Score=73.14 Aligned_cols=88 Identities=22% Similarity=0.305 Sum_probs=72.6
Q ss_pred CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHHHHHHcCCCCCC
Q 040104 14 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRSGKIDIK 92 (105)
Q Consensus 14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~g~i~~~ 92 (105)
++++|.++||+|....+..++++++++|+++.+|.......+++..++.+++++.++... .+.++++++++++|+++
T Consensus 230 ~~~~d~v~~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-- 307 (337)
T cd05283 230 AGSLDLIIDTVSASHDLDPYLSLLKPGGTLVLVGAPEEPLPVPPFPLIFGRKSVAGSLIGGRKETQEMLDFAAEHGIK-- 307 (337)
T ss_pred cCCceEEEECCCCcchHHHHHHHhcCCCEEEEEeccCCCCccCHHHHhcCceEEEEecccCHHHHHHHHHHHHhCCCc--
Confidence 468999999999875589999999999999999976544456666667899999998876 67899999999999984
Q ss_pred CceeeeeeCCCC
Q 040104 93 PLVTHRFGFSQK 104 (105)
Q Consensus 93 ~~i~~~~~l~~~ 104 (105)
+.+ ++|+++++
T Consensus 308 ~~~-~~~~~~~~ 318 (337)
T cd05283 308 PWV-EVIPMDGI 318 (337)
T ss_pred cce-EEEEHHHH
Confidence 455 57998764
No 75
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=99.05 E-value=2.7e-09 Score=70.36 Aligned_cols=96 Identities=24% Similarity=0.444 Sum_probs=74.1
Q ss_pred HHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHHH
Q 040104 5 EVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLE 82 (105)
Q Consensus 5 ~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~ 82 (105)
+.+++++.+ +.++|+++|++|+...+..++++++++|+++.+|..+. ..++....+.+++++.++... ...+.++++
T Consensus 223 ~~~~i~~~~~~~~~dvvld~~g~~~~~~~~~~~l~~~g~~i~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (340)
T cd05284 223 VVEEVRELTGGRGADAVIDFVGSDETLALAAKLLAKGGRYVIVGYGGH-GRLPTSDLVPTEISVIGSLWGTRAELVEVVA 301 (340)
T ss_pred HHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEEcCCCC-CccCHHHhhhcceEEEEEecccHHHHHHHHH
Confidence 445667666 45899999999986668999999999999999986543 334444445788999887665 778899999
Q ss_pred HHHcCCCCCCCceeeeeeCCCC
Q 040104 83 FLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 83 ~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
++++|.+++ .+ ++|+++++
T Consensus 302 ~l~~g~l~~--~~-~~~~~~~~ 320 (340)
T cd05284 302 LAESGKVKV--EI-TKFPLEDA 320 (340)
T ss_pred HHHhCCCCc--ce-EEEeHHHH
Confidence 999999853 34 47888764
No 76
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=99.01 E-value=3.4e-09 Score=69.99 Aligned_cols=101 Identities=28% Similarity=0.464 Sum_probs=73.3
Q ss_pred HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccc-hhhhhcCeEEEEeecc-CCCHHHH
Q 040104 4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPL-TPAAAREVDVVGVFRY-KNTWPLC 80 (105)
Q Consensus 4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~-~~~~~~~~~i~~~~~~-~~~~~~~ 80 (105)
++.+.+++.+ ++++|+++|++|+...+..++++++++|+++.+|.......... ...+.+++++.++... ...+.++
T Consensus 223 ~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (347)
T cd05278 223 DIVEQILELTGGRGVDCVIEAVGFEETFEQAVKVVRPGGTIANVGVYGKPDPLPLLGEWFGKNLTFKTGLVPVRARMPEL 302 (347)
T ss_pred hHHHHHHHHcCCCCCcEEEEccCCHHHHHHHHHHhhcCCEEEEEcCCCCCcccCccchhhhceeEEEeeccCchhHHHHH
Confidence 3456677666 46899999999985568999999999999999986543221112 1234577787776554 5789999
Q ss_pred HHHHHcCCCCCCCceeeeeeCCCC
Q 040104 81 LEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 81 ~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
++++++|++++.+.+...|+++++
T Consensus 303 ~~~~~~~~l~~~~~~~~~~~~~~~ 326 (347)
T cd05278 303 LDLIEEGKIDPSKLITHRFPLDDI 326 (347)
T ss_pred HHHHHcCCCChhHcEEEEecHHHH
Confidence 999999999654445667887654
No 77
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=98.99 E-value=2.7e-09 Score=70.20 Aligned_cols=86 Identities=21% Similarity=0.404 Sum_probs=68.0
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCc--cccchhhhhcCeEEEEeecc-CCCHHHHHHHHHcCCCCCC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEM--TVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRSGKIDIK 92 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~--~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~g~i~~~ 92 (105)
++|+++||+|+.. +..++++++++|+++.+|...... .++......+++++.+.+.. ++.++++++++++|.+ +
T Consensus 225 ~~d~~ld~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~ 301 (334)
T PRK13771 225 GADIVIETVGTPT-LEESLRSLNMGGKIIQIGNVDPSPTYSLRLGYIILKDIEIIGHISATKRDVEEALKLVAEGKI--K 301 (334)
T ss_pred CCcEEEEcCChHH-HHHHHHHHhcCCEEEEEeccCCCCCcccCHHHHHhcccEEEEecCCCHHHHHHHHHHHHcCCC--c
Confidence 7999999999875 899999999999999999754322 23333445678888887655 7789999999999998 4
Q ss_pred CceeeeeeCCCC
Q 040104 93 PLVTHRFGFSQK 104 (105)
Q Consensus 93 ~~i~~~~~l~~~ 104 (105)
+.++++|+++++
T Consensus 302 ~~~~~~~~~~~~ 313 (334)
T PRK13771 302 PVIGAEVSLSEI 313 (334)
T ss_pred ceEeeeEcHHHH
Confidence 557788998764
No 78
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=98.99 E-value=8.9e-10 Score=73.43 Aligned_cols=99 Identities=27% Similarity=0.429 Sum_probs=68.1
Q ss_pred hHHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-Cccccch------------hhhhcCeEEEE
Q 040104 3 AEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLT------------PAAAREVDVVG 69 (105)
Q Consensus 3 ~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~------------~~~~~~~~i~~ 69 (105)
+++.+++++.+++++|+|+||+|+.. ...++.++..+|+...++...+ ....+.. ....++.....
T Consensus 212 ~~~~e~~kk~~~~~~DvVlD~vg~~~-~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (347)
T KOG1198|consen 212 ENVVELIKKYTGKGVDVVLDCVGGST-LTKSLSCLLKGGGGAYIGLVGDELANYKLDDLWQSANGIKLYSLGLKGVNYRW 290 (347)
T ss_pred HHHHHHHHhhcCCCccEEEECCCCCc-cccchhhhccCCceEEEEeccccccccccccchhhhhhhhheeeeeeccceee
Confidence 57888888888779999999999986 8889999999887666654321 1111111 00111222211
Q ss_pred eecc--CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 70 VFRY--KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 70 ~~~~--~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
.+.. .+.++.+.+++++|++ ++.+.++||++++
T Consensus 291 ~~~~~~~~~l~~l~~~ie~gki--kp~i~~~~p~~~~ 325 (347)
T KOG1198|consen 291 LYFVPSAEYLKALVELIEKGKI--KPVIDSVYPFSQA 325 (347)
T ss_pred eeecCCHHHHHHHHHHHHcCcc--cCCcceeeeHHHH
Confidence 1121 6778999999999977 8889999999875
No 79
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=98.97 E-value=4.3e-09 Score=69.12 Aligned_cols=88 Identities=32% Similarity=0.583 Sum_probs=71.0
Q ss_pred CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHHHHHHcCCCCCC
Q 040104 14 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRSGKIDIK 92 (105)
Q Consensus 14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~g~i~~~ 92 (105)
++++|+++||+|....+..++++++++|+++.+|.......++...+..++.++.+++.. ...+.++++++++|.+++.
T Consensus 230 ~~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~ 309 (338)
T cd08254 230 GGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVVGLGRDKLTVDLSDLIARELRIIGSFGGTPEDLPEVLDLIAKGKLDPQ 309 (338)
T ss_pred CCCceEEEECCCCHHHHHHHHHHhhcCCEEEEECCCCCCCccCHHHHhhCccEEEEeccCCHHHHHHHHHHHHcCCCccc
Confidence 568999999999877799999999999999999875544455666677888888887766 7789999999999999643
Q ss_pred CceeeeeeCCCC
Q 040104 93 PLVTHRFGFSQK 104 (105)
Q Consensus 93 ~~i~~~~~l~~~ 104 (105)
.+.|+++++
T Consensus 310 ---~~~~~~~~~ 318 (338)
T cd08254 310 ---VETRPLDEI 318 (338)
T ss_pred ---ceeEcHHHH
Confidence 457777653
No 80
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=98.95 E-value=9.8e-09 Score=67.83 Aligned_cols=99 Identities=34% Similarity=0.637 Sum_probs=72.5
Q ss_pred HHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccc---cchhhhhcCeEEEEeecc------CC
Q 040104 6 VEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTV---PLTPAAAREVDVVGVFRY------KN 75 (105)
Q Consensus 6 ~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~---~~~~~~~~~~~i~~~~~~------~~ 75 (105)
.+++.+.. +.++|+++||+|....+..++++++++|+++.+|.......+ .+..+..++.++.++... ++
T Consensus 216 ~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (343)
T cd08236 216 VEKVRELTEGRGADLVIEAAGSPATIEQALALARPGGKVVLVGIPYGDVTLSEEAFEKILRKELTIQGSWNSYSAPFPGD 295 (343)
T ss_pred HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcccCCCcccccCCHHHHHhcCcEEEEEeeccccccchh
Confidence 34555566 457999999998876689999999999999999965443222 233345778888877543 45
Q ss_pred CHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 76 TWPLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 76 ~~~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
.+.++++++++|++.+.+.+..+++++++
T Consensus 296 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 324 (343)
T cd08236 296 EWRTALDLLASGKIKVEPLITHRLPLEDG 324 (343)
T ss_pred hHHHHHHHHHcCCCChHHheeeeecHHHH
Confidence 68889999999998544556677887754
No 81
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.95 E-value=1.8e-09 Score=73.27 Aligned_cols=85 Identities=16% Similarity=0.305 Sum_probs=72.6
Q ss_pred CCcEEEEccCChHHHHHH-HHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CC-CHH--HHHHHHHcCCC-
Q 040104 16 GIDVSFDCAGFNKTMSTA-LSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KN-TWP--LCLEFLRSGKI- 89 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~-~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~-~~~--~~~~~v~~g~i- 89 (105)
++|++|+|+|++..+... +.+++++|+++.+|.. +.+++...+..+++++.+++.+ .. .++ +.+.++++|++
T Consensus 257 ~aDVVI~atG~~~~i~~~~l~~mk~GgilvnvG~~--~~eId~~~L~~~el~i~g~~~~~~~~~~~~g~aI~LLa~Grlv 334 (413)
T cd00401 257 EGDIFVTTTGNKDIITGEHFEQMKDGAIVCNIGHF--DVEIDVKGLKENAVEVVNIKPQVDRYELPDGRRIILLAEGRLV 334 (413)
T ss_pred CCCEEEECCCCHHHHHHHHHhcCCCCcEEEEeCCC--CCccCHHHHHhhccEEEEccCCcceEEcCCcchhhhhhCcCCC
Confidence 689999999999888876 9999999999999964 4568888888899999999887 33 566 79999999999
Q ss_pred CCCCceeee-----eeCC
Q 040104 90 DIKPLVTHR-----FGFS 102 (105)
Q Consensus 90 ~~~~~i~~~-----~~l~ 102 (105)
++...++|. |+|+
T Consensus 335 nl~~~~gH~~~vmd~sf~ 352 (413)
T cd00401 335 NLGCATGHPSFVMSNSFT 352 (413)
T ss_pred CCcccCCCccceechhHH
Confidence 888888887 6665
No 82
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=98.94 E-value=7.2e-09 Score=68.42 Aligned_cols=98 Identities=21% Similarity=0.320 Sum_probs=74.8
Q ss_pred HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC-ccccchhhhhcCeEEEEeecc-CCCHHHH
Q 040104 4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE-MTVPLTPAAAREVDVVGVFRY-KNTWPLC 80 (105)
Q Consensus 4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~-~~~~~~~ 80 (105)
+..+++.+.+ ++++|+++|+.+....+..++++++++|+++.+|..... ..++...++.++.++.+.... .+.++++
T Consensus 221 ~~~~~~~~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (341)
T cd08297 221 DDVEAVKELTGGGGAHAVVVTAVSAAAYEQALDYLRPGGTLVCVGLPPGGFIPLDPFDLVLRGITIVGSLVGTRQDLQEA 300 (341)
T ss_pred cHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHhhcCCEEEEecCCCCCCCCCCHHHHHhcccEEEEeccCCHHHHHHH
Confidence 3456677777 568999999887777799999999999999999965432 245555556889998886655 5788999
Q ss_pred HHHHHcCCCCCCCceeeeeeCCCC
Q 040104 81 LEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 81 ~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
++++++++++ +.+ .+|+++++
T Consensus 301 ~~~~~~~~l~--~~~-~~~~~~~~ 321 (341)
T cd08297 301 LEFAARGKVK--PHI-QVVPLEDL 321 (341)
T ss_pred HHHHHcCCCc--cee-EEEcHHHH
Confidence 9999999984 344 46777653
No 83
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=98.93 E-value=1.5e-08 Score=66.25 Aligned_cols=98 Identities=16% Similarity=0.345 Sum_probs=72.7
Q ss_pred HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-CccccchhhhhcCeEEEEeecc--------
Q 040104 4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAAREVDVVGVFRY-------- 73 (105)
Q Consensus 4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~-------- 73 (105)
+..+.+.+.+ +.++|.++||+|+.. ....+++++++|+++.+|.... +..++...+..++.++.+....
T Consensus 194 ~~~~~~~~~~~~~~~d~vl~~~g~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (323)
T cd05282 194 DLAQRVKEATGGAGARLALDAVGGES-ATRLARSLRPGGTLVNYGLLSGEPVPFPRSVFIFKDITVRGFWLRQWLHSATK 272 (323)
T ss_pred hHHHHHHHHhcCCCceEEEECCCCHH-HHHHHHhhCCCCEEEEEccCCCCCCCCCHHHHhhcCceEEEEEehHhhccCCH
Confidence 3456677776 568999999999977 7788999999999999986543 2334544444588888876543
Q ss_pred ---CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 74 ---KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 74 ---~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
...+.++++++.+|+++ +.++++|+++++
T Consensus 273 ~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~~~~ 304 (323)
T cd05282 273 EAKQETFAEVIKLVEAGVLT--TPVGAKFPLEDF 304 (323)
T ss_pred HHHHHHHHHHHHHHhCCCcc--cCccceecHHHH
Confidence 13577889999999984 446778888764
No 84
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.91 E-value=1.1e-08 Score=67.09 Aligned_cols=98 Identities=19% Similarity=0.341 Sum_probs=75.2
Q ss_pred HHHHHHHHHcC-CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC-ccccchhhhhcCeEEEEeecc-CCCHHHH
Q 040104 4 EEVEKIDKAMG-TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE-MTVPLTPAAAREVDVVGVFRY-KNTWPLC 80 (105)
Q Consensus 4 ~~~~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~-~~~~~~~ 80 (105)
+..+.+++.++ +++|.++|++|... +..++++++++|+++.+|..... ........+.+++++.++... ...++++
T Consensus 216 ~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (336)
T cd08276 216 DWGEEVLKLTGGRGVDHVVEVGGPGT-LAQSIKAVAPGGVISLIGFLSGFEAPVLLLPLLTKGATLRGIAVGSRAQFEAM 294 (336)
T ss_pred CHHHHHHHHcCCCCCcEEEECCChHH-HHHHHHhhcCCCEEEEEccCCCCccCcCHHHHhhcceEEEEEecCcHHHHHHH
Confidence 34566777774 68999999998765 89999999999999999965432 234445567889999988765 6788999
Q ss_pred HHHHHcCCCCCCCceeeeeeCCCC
Q 040104 81 LEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 81 ~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
++++.++.++ ++++++|+++++
T Consensus 295 ~~l~~~~~l~--~~~~~~~~~~~~ 316 (336)
T cd08276 295 NRAIEAHRIR--PVIDRVFPFEEA 316 (336)
T ss_pred HHHHHcCCcc--cccCcEEeHHHH
Confidence 9999998884 445667887653
No 85
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=98.91 E-value=1.2e-08 Score=67.09 Aligned_cols=91 Identities=31% Similarity=0.537 Sum_probs=70.4
Q ss_pred CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC--CccccchhhhhcCeEEEEeeccCCCHHHHHHHHHcCCCCC
Q 040104 14 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH--EMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDI 91 (105)
Q Consensus 14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~g~i~~ 91 (105)
++++|+++||+|....+..++++++++|+++.+|.... ...++...+..+++++.+.......++++++++.++++++
T Consensus 224 ~~~vd~v~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 303 (334)
T cd08234 224 PYGFDVVIEATGVPKTLEQAIEYARRGGTVLVFGVYAPDARVSISPFEIFQKELTIIGSFINPYTFPRAIALLESGKIDV 303 (334)
T ss_pred CCCCcEEEECCCChHHHHHHHHHHhcCCEEEEEecCCCCCCcccCHHHHHhCCcEEEEeccCHHHHHHHHHHHHcCCCCh
Confidence 56899999999877668999999999999999986542 2334433445578888887655667899999999999976
Q ss_pred CCceeeeeeCCCC
Q 040104 92 KPLVTHRFGFSQK 104 (105)
Q Consensus 92 ~~~i~~~~~l~~~ 104 (105)
.++++++|+++++
T Consensus 304 ~~~~~~~~~~~~~ 316 (334)
T cd08234 304 KGLVSHRLPLEEV 316 (334)
T ss_pred hhhEEEEecHHHH
Confidence 5556778887654
No 86
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=98.90 E-value=1.2e-08 Score=67.48 Aligned_cols=98 Identities=18% Similarity=0.297 Sum_probs=64.1
Q ss_pred HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC---CCcc----ccc--hhhh-hcCeEEEEeecc
Q 040104 4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH---HEMT----VPL--TPAA-AREVDVVGVFRY 73 (105)
Q Consensus 4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~---~~~~----~~~--~~~~-~~~~~i~~~~~~ 73 (105)
++.+.+++.+++|+|++||++|+.. +..++++++++|+++.+|... .+.. +.. ..+. .++++..+....
T Consensus 212 ~~~~~i~~~~~~gvd~vid~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (345)
T cd08293 212 NVAERLRELCPEGVDVYFDNVGGEI-SDTVISQMNENSHIILCGQISQYNKDVPYPPPLPEATEAILKERNITRERFLVL 290 (345)
T ss_pred CHHHHHHHHCCCCceEEEECCCcHH-HHHHHHHhccCCEEEEEeeeecccCccCccccccchhHHHhhhcceEEEEEEee
Confidence 4566777777778999999999976 899999999999999998532 1111 111 1111 233333322211
Q ss_pred ------CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 74 ------KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 74 ------~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
...++++++++++|++++. +..++||+++
T Consensus 291 ~~~~~~~~~~~~~~~l~~~g~i~~~--~~~~~~l~~~ 325 (345)
T cd08293 291 NYKDKFEEAIAQLSQWVKEGKLKVK--ETVYEGLENA 325 (345)
T ss_pred ccHhHHHHHHHHHHHHHHCCCccce--eEEeecHHHH
Confidence 2346778899999999543 4445688764
No 87
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=98.90 E-value=9e-09 Score=67.50 Aligned_cols=92 Identities=17% Similarity=0.237 Sum_probs=70.6
Q ss_pred HHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC-CCccccchhhhhcCeEEEEeecc-CCCHHHHHHHH
Q 040104 7 EKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-HEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFL 84 (105)
Q Consensus 7 ~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v 84 (105)
+.+++.+ +++|+++|++|+. .+..++++++++|+++.+|... ....+++..+..++.++.++..+ ++.++++++++
T Consensus 215 ~~l~~~~-~~~d~vl~~~g~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 292 (325)
T cd08264 215 EKVKEIT-KMADVVINSLGSS-FWDLSLSVLGRGGRLVTFGTLTGGEVKLDLSDLYSKQISIIGSTGGTRKELLELVKIA 292 (325)
T ss_pred HHHHHHh-CCCCEEEECCCHH-HHHHHHHhhccCCEEEEEecCCCCCCccCHHHHhhcCcEEEEccCCCHHHHHHHHHHH
Confidence 4455555 6899999999986 5999999999999999999642 23456666777788888888766 67889999999
Q ss_pred HcCCCCCCCceeeeeeCCCC
Q 040104 85 RSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 85 ~~g~i~~~~~i~~~~~l~~~ 104 (105)
...+ ..++++||++++
T Consensus 293 ~~~~----~~~~~~~~~~~~ 308 (325)
T cd08264 293 KDLK----VKVWKTFKLEEA 308 (325)
T ss_pred HcCC----ceeEEEEcHHHH
Confidence 5433 345678888764
No 88
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=98.88 E-value=1.3e-08 Score=66.57 Aligned_cols=98 Identities=22% Similarity=0.318 Sum_probs=73.0
Q ss_pred HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-CccccchhhhhcCeEEEEeecc-------C
Q 040104 4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAAREVDVVGVFRY-------K 74 (105)
Q Consensus 4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~-------~ 74 (105)
+..+.+.+.+ ++++|+++|++|+.. ...++++++++|+++.+|.... ...++...++.++.++.++... .
T Consensus 198 ~~~~~~~~~~~~~~~d~vl~~~g~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (324)
T cd08244 198 DWPDQVREALGGGGVTVVLDGVGGAI-GRAALALLAPGGRFLTYGWASGEWTALDEDDARRRGVTVVGLLGVQAERGGLR 276 (324)
T ss_pred cHHHHHHHHcCCCCceEEEECCChHh-HHHHHHHhccCcEEEEEecCCCCCCccCHHHHhhCCcEEEEeecccCCHHHHH
Confidence 3445666666 458999999999986 7999999999999999987543 2244444556788888876543 2
Q ss_pred CCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 75 NTWPLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 75 ~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
..+.++++++.++++ +++++++|+++++
T Consensus 277 ~~~~~~~~~l~~~~l--~~~~~~~~~~~~~ 304 (324)
T cd08244 277 ALEARALAEAAAGRL--VPVVGQTFPLERA 304 (324)
T ss_pred HHHHHHHHHHHCCCc--cCccceEEeHHHH
Confidence 457778899999988 4557778888764
No 89
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=98.85 E-value=1.5e-08 Score=66.44 Aligned_cols=98 Identities=21% Similarity=0.318 Sum_probs=70.4
Q ss_pred HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC-c-----cccchhhhhcCeEEEEeecc----
Q 040104 4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE-M-----TVPLTPAAAREVDVVGVFRY---- 73 (105)
Q Consensus 4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~-----~~~~~~~~~~~~~i~~~~~~---- 73 (105)
+..+++.+.+++++|+++||+|+.. +..++++++++|+++.+|..... . .++......++.++.++...
T Consensus 202 ~~~~~v~~~~~~~~d~vi~~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (329)
T cd05288 202 DLAEALKEAAPDGIDVYFDNVGGEI-LDAALTLLNKGGRIALCGAISQYNATEPPGPKNLGNIITKRLTMQGFIVSDYAD 280 (329)
T ss_pred hHHHHHHHhccCCceEEEEcchHHH-HHHHHHhcCCCceEEEEeeccCcccccccccccHHHHhhCcceEEeecchhhHH
Confidence 3445566666668999999999865 99999999999999999864321 1 12344456788888876543
Q ss_pred --CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 74 --KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 74 --~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
...+.++++++.+|.+++.+ ..+++++++
T Consensus 281 ~~~~~~~~~~~~~~~g~i~~~~--~~~~~l~~~ 311 (329)
T cd05288 281 RFPEALAELAKWLAEGKLKYRE--DVVEGLENA 311 (329)
T ss_pred HHHHHHHHHHHHHHCCCccccc--cccccHHHH
Confidence 24578899999999996543 335677653
No 90
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=98.85 E-value=2e-08 Score=66.24 Aligned_cols=96 Identities=23% Similarity=0.329 Sum_probs=71.3
Q ss_pred HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHHHH
Q 040104 5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLEF 83 (105)
Q Consensus 5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~ 83 (105)
..+.+++.++ ++|.++++.++...+..++++++.+|+++.+|.......++...+..++.++.++..+ ++.+++++++
T Consensus 220 ~~~~v~~~~~-~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 298 (338)
T PRK09422 220 VAKIIQEKTG-GAHAAVVTAVAKAAFNQAVDAVRAGGRVVAVGLPPESMDLSIPRLVLDGIEVVGSLVGTRQDLEEAFQF 298 (338)
T ss_pred HHHHHHHhcC-CCcEEEEeCCCHHHHHHHHHhccCCCEEEEEeeCCCCceecHHHHhhcCcEEEEecCCCHHHHHHHHHH
Confidence 3455666655 7896555555566699999999999999999976544455555667788888887655 6778999999
Q ss_pred HHcCCCCCCCceeeeeeCCCC
Q 040104 84 LRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 84 v~~g~i~~~~~i~~~~~l~~~ 104 (105)
+.+|+++ +.++ .++++++
T Consensus 299 ~~~g~l~--~~v~-~~~~~~~ 316 (338)
T PRK09422 299 GAEGKVV--PKVQ-LRPLEDI 316 (338)
T ss_pred HHhCCCC--ccEE-EEcHHHH
Confidence 9999884 4565 5787654
No 91
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=98.82 E-value=3.5e-08 Score=64.65 Aligned_cols=97 Identities=21% Similarity=0.344 Sum_probs=73.3
Q ss_pred HHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-CccccchhhhhcCeEEEEeecc-CCCHHHHH
Q 040104 5 EVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAAREVDVVGVFRY-KNTWPLCL 81 (105)
Q Consensus 5 ~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~ 81 (105)
..+.+.+.+ ++++|.+++++|... +..++++++++|+++.+|.... ...++....+.++.++.+.... ...+.+++
T Consensus 223 ~~~~~~~~~~~~~~d~~i~~~g~~~-~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (342)
T cd08266 223 FVREVRELTGKRGVDVVVEHVGAAT-WEKSLKSLARGGRLVTCGATTGYEAPIDLRHVFWRQLSILGSTMGTKAELDEAL 301 (342)
T ss_pred HHHHHHHHhCCCCCcEEEECCcHHH-HHHHHHHhhcCCEEEEEecCCCCCCCcCHHHHhhcceEEEEEecCCHHHHHHHH
Confidence 445555555 458999999999865 8999999999999999986543 2234443456788888887665 56788899
Q ss_pred HHHHcCCCCCCCceeeeeeCCCC
Q 040104 82 EFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 82 ~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
+++.++.+ +++++++|+++++
T Consensus 302 ~~l~~~~l--~~~~~~~~~~~~~ 322 (342)
T cd08266 302 RLVFRGKL--KPVIDSVFPLEEA 322 (342)
T ss_pred HHHHcCCc--ccceeeeEcHHHH
Confidence 99999988 4567778887654
No 92
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=98.78 E-value=5.4e-08 Score=64.24 Aligned_cols=98 Identities=16% Similarity=0.257 Sum_probs=70.8
Q ss_pred HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC-CCccccchhhhhcCeEEEEeecc--C------
Q 040104 4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-HEMTVPLTPAAAREVDVVGVFRY--K------ 74 (105)
Q Consensus 4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~--~------ 74 (105)
+..+.+++.+++++|.++||+|+.. +..++++++++|+++.+|... .+..++....+.++.++.+.... .
T Consensus 209 ~~~~~i~~~~~~~~d~vld~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (341)
T cd08290 209 LATELLKSAPGGRPKLALNCVGGKS-ATELARLLSPGGTMVTYGGMSGQPVTVPTSLLIFKDITLRGFWLTRWLKRANPE 287 (341)
T ss_pred cHHHHHHHHcCCCceEEEECcCcHh-HHHHHHHhCCCCEEEEEeccCCCCcccCHHHHhhCCceEEEEecHHHHhhcCHH
Confidence 3455566666448999999999976 788999999999999998643 23345554557888998887643 1
Q ss_pred ---CCHHHHHHHHHcCCCCCCCceeeee---eCCCC
Q 040104 75 ---NTWPLCLEFLRSGKIDIKPLVTHRF---GFSQK 104 (105)
Q Consensus 75 ---~~~~~~~~~v~~g~i~~~~~i~~~~---~l~~~ 104 (105)
..+.++++++.+|++++. ...+| +++++
T Consensus 288 ~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~ 321 (341)
T cd08290 288 EKEDMLEELAELIREGKLKAP--PVEKVTDDPLEEF 321 (341)
T ss_pred HHHHHHHHHHHHHHcCCccCC--cccccccCCHHHH
Confidence 247889999999998543 44455 77653
No 93
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=98.76 E-value=1.9e-08 Score=66.03 Aligned_cols=100 Identities=16% Similarity=0.256 Sum_probs=66.2
Q ss_pred HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC-ccccchhhhhcCe------EEEEeecc--
Q 040104 4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE-MTVPLTPAAAREV------DVVGVFRY-- 73 (105)
Q Consensus 4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~------~i~~~~~~-- 73 (105)
+..+.+++.+ ++++|+++||+|+.. ...++++++++|+++.+|..... ..++...+..++. .+.+....
T Consensus 196 ~~~~~~~~~~~~~~~d~vl~~~~~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (327)
T PRK10754 196 NIVERVKEITGGKKVRVVYDSVGKDT-WEASLDCLQRRGLMVSFGNASGPVTGVNLGILNQKGSLYVTRPSLQGYITTRE 274 (327)
T ss_pred cHHHHHHHHcCCCCeEEEEECCcHHH-HHHHHHHhccCCEEEEEccCCCCCCCcCHHHHhccCceEEecceeecccCCHH
Confidence 3556677777 468999999999865 88999999999999999965422 2233332222221 12222111
Q ss_pred --CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 74 --KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 74 --~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
...+.++++++.+|++++..++.++||++++
T Consensus 275 ~~~~~~~~~~~~l~~g~l~~~~~~~~~~~~~~~ 307 (327)
T PRK10754 275 ELTEASNELFSLIASGVIKVDVAEQQKFPLKDA 307 (327)
T ss_pred HHHHHHHHHHHHHHCCCeeeecccCcEEcHHHH
Confidence 2234568899999999755556778998764
No 94
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=98.76 E-value=3.2e-08 Score=64.29 Aligned_cols=89 Identities=17% Similarity=0.334 Sum_probs=70.1
Q ss_pred HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC-----CCccc-cchhhhhcCeEEEEeecc----
Q 040104 4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-----HEMTV-PLTPAAAREVDVVGVFRY---- 73 (105)
Q Consensus 4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-----~~~~~-~~~~~~~~~~~i~~~~~~---- 73 (105)
+..+++++..++|+|+.||.+|+.. ++..+..++.+||++.+|.-+ .+..+ +....+.|++++.|+...
T Consensus 211 ~~~~aL~r~~P~GIDiYfeNVGG~~-lDavl~nM~~~gri~~CG~ISqYN~~~~~~~~~l~~ii~Kr~~iqgflv~d~~d 289 (343)
T KOG1196|consen 211 DLSAALKRCFPEGIDIYFENVGGKM-LDAVLLNMNLHGRIAVCGMISQYNLENPEGLHNLSTIIYKRIRIQGFLVSDYLD 289 (343)
T ss_pred CHHHHHHHhCCCcceEEEeccCcHH-HHHHHHhhhhccceEeeeeehhccccCCccccchhhheeeeEEeeeEEeechhh
Confidence 5667888877899999999999987 999999999999999999632 22222 234457899999998754
Q ss_pred --CCCHHHHHHHHHcCCCCCCC
Q 040104 74 --KNTWPLCLEFLRSGKIDIKP 93 (105)
Q Consensus 74 --~~~~~~~~~~v~~g~i~~~~ 93 (105)
.+.+..+..++.+|+|+...
T Consensus 290 ~~~k~ld~l~~~ikegKI~y~e 311 (343)
T KOG1196|consen 290 KYPKFLDFLLPYIKEGKITYVE 311 (343)
T ss_pred hhHHHHHHHHHHHhcCceEEeh
Confidence 45567788999999996543
No 95
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=98.75 E-value=6.1e-08 Score=62.29 Aligned_cols=88 Identities=27% Similarity=0.437 Sum_probs=64.2
Q ss_pred CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccc-hhhhhcCeEEEEeecc-------------CCCHHH
Q 040104 14 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPL-TPAAAREVDVVGVFRY-------------KNTWPL 79 (105)
Q Consensus 14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~-~~~~~~~~~i~~~~~~-------------~~~~~~ 79 (105)
++++|.+||++|....+..++++++++|+++.+|..... .... ..+..+..++.+.... .+.+++
T Consensus 157 ~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (277)
T cd08255 157 GRGADVVIEASGSPSALETALRLLRDRGRVVLVGWYGLK-PLLLGEEFHFKRLPIRSSQVYGIGRYDRPRRWTEARNLEE 235 (277)
T ss_pred CCCCCEEEEccCChHHHHHHHHHhcCCcEEEEEeccCCC-ccccHHHHHhccCeEEeecccccccccccccccccccHHH
Confidence 458999999999877789999999999999999975543 2221 2344455566555322 256899
Q ss_pred HHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 80 CLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 80 ~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
+++++.+|++ ++++.++|+++++
T Consensus 236 ~~~l~~~~~l--~~~~~~~~~~~~~ 258 (277)
T cd08255 236 ALDLLAEGRL--EALITHRVPFEDA 258 (277)
T ss_pred HHHHHHcCCc--cccccCccCHHHH
Confidence 9999999987 5556778887764
No 96
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=98.75 E-value=7.6e-08 Score=62.38 Aligned_cols=86 Identities=14% Similarity=0.255 Sum_probs=69.9
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcC-CCCCccccchhhhhcCeEEEEeecc--------C----CCHHHHH
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGM-GHHEMTVPLTPAAAREVDVVGVFRY--------K----NTWPLCL 81 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~-~~~~~~~~~~~~~~~~~~i~~~~~~--------~----~~~~~~~ 81 (105)
.++-..++|+|+-. -.+..+.|..||+++.+|. +..+.+++...++||++.++|+|.. + +.+.++.
T Consensus 232 ~~prLalNcVGGks-a~~iar~L~~GgtmvTYGGMSkqPv~~~ts~lIFKdl~~rGfWvt~W~~~~~~pe~~~~~i~~~~ 310 (354)
T KOG0025|consen 232 PRPRLALNCVGGKS-ATEIARYLERGGTMVTYGGMSKQPVTVPTSLLIFKDLKLRGFWVTRWKKEHKSPEERKEMIDELC 310 (354)
T ss_pred CCceEEEeccCchh-HHHHHHHHhcCceEEEecCccCCCcccccchheeccceeeeeeeeehhhccCCcHHHHHHHHHHH
Confidence 46889999999987 7888999999999999986 4478889999999999999999964 1 3467788
Q ss_pred HHHHcCCCCCCCceeeeeeCCC
Q 040104 82 EFLRSGKIDIKPLVTHRFGFSQ 103 (105)
Q Consensus 82 ~~v~~g~i~~~~~i~~~~~l~~ 103 (105)
+++..|+|.. .-....||++
T Consensus 311 ~l~~~G~i~~--~~~e~v~L~~ 330 (354)
T KOG0025|consen 311 DLYRRGKLKA--PNCEKVPLAD 330 (354)
T ss_pred HHHHcCeecc--ccceeeechh
Confidence 9999999953 2334567665
No 97
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=98.73 E-value=5.4e-08 Score=63.34 Aligned_cols=96 Identities=20% Similarity=0.335 Sum_probs=67.9
Q ss_pred HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccc---cchhhh--hcCeEEEEeecc---CCC
Q 040104 5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTV---PLTPAA--AREVDVVGVFRY---KNT 76 (105)
Q Consensus 5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~---~~~~~~--~~~~~i~~~~~~---~~~ 76 (105)
..+.+++. ++++|.++|++|+.. +..++++++++|+++.+|........ ....+. .+++++.++... ...
T Consensus 198 ~~~~i~~~-~~~~d~vl~~~~~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (320)
T cd08243 198 IAEQLRAA-PGGFDKVLELVGTAT-LKDSLRHLRPGGIVCMTGLLGGQWTLEDFNPMDDIPSGVNLTLTGSSSGDVPQTP 275 (320)
T ss_pred HHHHHHHh-CCCceEEEECCChHH-HHHHHHHhccCCEEEEEccCCCCcccCCcchhhhhhhccceEEEecchhhhhHHH
Confidence 34556666 678999999999865 99999999999999999964322211 112222 566777666543 345
Q ss_pred HHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 77 WPLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 77 ~~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
+.++++++.++.++ ++.+++|+++++
T Consensus 276 ~~~~~~~~~~~~~~--~~~~~~~~l~~~ 301 (320)
T cd08243 276 LQELFDFVAAGHLD--IPPSKVFTFDEI 301 (320)
T ss_pred HHHHHHHHHCCcee--cccccEEcHHHH
Confidence 78899999999884 446678888764
No 98
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=98.73 E-value=1.3e-07 Score=62.00 Aligned_cols=97 Identities=18% Similarity=0.303 Sum_probs=70.4
Q ss_pred HHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-Ccc-ccchhhhhcCeEEEEeeccC-------
Q 040104 5 EVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMT-VPLTPAAAREVDVVGVFRYK------- 74 (105)
Q Consensus 5 ~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~-~~~~~~~~~~~~i~~~~~~~------- 74 (105)
..+++++.+ +.++|+++|++|+.. +..++++++++|+++.+|...+ ... ++...+..++.++.++....
T Consensus 198 ~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (334)
T PTZ00354 198 FAPKVKKLTGEKGVNLVLDCVGGSY-LSETAEVLAVDGKWIVYGFMGGAKVEKFNLLPLLRKRASIIFSTLRSRSDEYKA 276 (334)
T ss_pred HHHHHHHHhCCCCceEEEECCchHH-HHHHHHHhccCCeEEEEecCCCCcccccCHHHHHhhCCEEEeeeccccchhhhH
Confidence 556777777 468999999998765 8999999999999999986432 222 55555566777888765431
Q ss_pred ----CCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 75 ----NTWPLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 75 ----~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
..++++++++.++.++ +++++.|+++++
T Consensus 277 ~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~ 308 (334)
T PTZ00354 277 DLVASFEREVLPYMEEGEIK--PIVDRTYPLEEV 308 (334)
T ss_pred HHHHHHHHHHHHHHHCCCcc--CccccEEcHHHH
Confidence 2246788899999884 456677887653
No 99
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.68 E-value=6.9e-08 Score=62.69 Aligned_cols=88 Identities=20% Similarity=0.322 Sum_probs=66.3
Q ss_pred CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-Cccccchhhhh--cCeEEEEeecc-----CCCHHHHHHHHH
Q 040104 14 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAA--REVDVVGVFRY-----KNTWPLCLEFLR 85 (105)
Q Consensus 14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~--~~~~i~~~~~~-----~~~~~~~~~~v~ 85 (105)
++++|+++|++|+.. +..++++++++|+++.+|.... ...++...+.. ++.++.++... ...+..+++++.
T Consensus 190 ~~~~d~vl~~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (305)
T cd08270 190 GAPVDLVVDSVGGPQ-LARALELLAPGGTVVSVGSSSGEPAVFNPAAFVGGGGGRRLYTFFLYDGEPLAADLARLLGLVA 268 (305)
T ss_pred CCCceEEEECCCcHH-HHHHHHHhcCCCEEEEEeccCCCcccccHHHHhcccccceEEEEEccCHHHHHHHHHHHHHHHH
Confidence 347999999999875 8999999999999999986542 23344444444 58888877643 356888999999
Q ss_pred cCCCCCCCceeeeeeCCCC
Q 040104 86 SGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 86 ~g~i~~~~~i~~~~~l~~~ 104 (105)
+|+++ +.+.++++++++
T Consensus 269 ~~~i~--~~~~~~~~~~~~ 285 (305)
T cd08270 269 AGRLD--PRIGWRGSWTEI 285 (305)
T ss_pred CCCcc--ceeccEEcHHHH
Confidence 99995 346678887654
No 100
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=98.65 E-value=1.8e-07 Score=61.28 Aligned_cols=86 Identities=21% Similarity=0.399 Sum_probs=66.6
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC-ccccchhhhhcCeEEEEeecc-CCCHHHHHHHHHcCCCCCCC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE-MTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRSGKIDIKP 93 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~g~i~~~~ 93 (105)
++|++++++|... ...++++++++|+++.+|..... ..++.....+++..+.++... ...+.++++++.+|.+ ++
T Consensus 226 ~~d~v~~~~g~~~-~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~ 302 (332)
T cd08259 226 GADVVIELVGSPT-IEESLRSLNKGGRLVLIGNVTPDPAPLRPGLLILKEIRIIGSISATKADVEEALKLVKEGKI--KP 302 (332)
T ss_pred CCCEEEECCChHH-HHHHHHHhhcCCEEEEEcCCCCCCcCCCHHHHHhCCcEEEEecCCCHHHHHHHHHHHHcCCC--cc
Confidence 7999999999877 89999999999999999865432 223333344677787777655 6778899999999988 55
Q ss_pred ceeeeeeCCCC
Q 040104 94 LVTHRFGFSQK 104 (105)
Q Consensus 94 ~i~~~~~l~~~ 104 (105)
+++++|+++++
T Consensus 303 ~~~~~~~~~~~ 313 (332)
T cd08259 303 VIDRVVSLEDI 313 (332)
T ss_pred ceeEEEcHHHH
Confidence 67788988764
No 101
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=98.64 E-value=3.7e-07 Score=59.79 Aligned_cols=92 Identities=15% Similarity=0.261 Sum_probs=64.9
Q ss_pred HHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-CccccchhhhhcCeEEEEeecc---C----CCHHHH
Q 040104 9 IDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAAREVDVVGVFRY---K----NTWPLC 80 (105)
Q Consensus 9 ~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~---~----~~~~~~ 80 (105)
+++..++++|.++||+|+.. +..++++++++|+++.+|.... ...++...+..+++++.+.... . ..+.++
T Consensus 204 ~~~~~~~~~d~vld~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (323)
T TIGR02823 204 GKPLEKERWAGAVDTVGGHT-LANVLAQLKYGGAVAACGLAGGPDLPTTVLPFILRGVSLLGIDSVYCPMALREAAWQRL 282 (323)
T ss_pred HHHhcCCCceEEEECccHHH-HHHHHHHhCCCCEEEEEcccCCCCccccHHHHhhcceEEEEEeccccCchhHHHHHHHH
Confidence 44444446999999999876 8999999999999999997542 2334445555788888886533 1 135566
Q ss_pred HHHHHcCCCCCCCceeeeeeCCCC
Q 040104 81 LEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 81 ~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
.+++..+.+ .++ .++||++++
T Consensus 283 ~~~~~~~~~--~~~-~~~~~l~~~ 303 (323)
T TIGR02823 283 ATDLKPRNL--ESI-TREITLEEL 303 (323)
T ss_pred HHHhhcCCC--cCc-eeeecHHHH
Confidence 667778877 333 448888764
No 102
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=98.63 E-value=4.5e-07 Score=58.75 Aligned_cols=97 Identities=22% Similarity=0.411 Sum_probs=70.5
Q ss_pred HHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-CccccchhhhhcCeEEEEeecc-C-------
Q 040104 5 EVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAAREVDVVGVFRY-K------- 74 (105)
Q Consensus 5 ~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~-~------- 74 (105)
..+.+.+.+ ++++|+++|++|+.. ...++.+++++|+++.+|.... ...++...++.+++++.++... .
T Consensus 196 ~~~~~~~~~~~~~~d~vi~~~g~~~-~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (323)
T cd05276 196 FAEEVKEATGGRGVDVILDMVGGDY-LARNLRALAPDGRLVLIGLLGGAKAELDLAPLLRKRLTLTGSTLRSRSLEEKAA 274 (323)
T ss_pred HHHHHHHHhCCCCeEEEEECCchHH-HHHHHHhhccCCEEEEEecCCCCCCCCchHHHHHhCCeEEEeeccchhhhccHH
Confidence 445566665 468999999999877 8889999999999999986432 2334444555688888877643 1
Q ss_pred ---CCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 75 ---NTWPLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 75 ---~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
..+.++++++.++++ +++.++.|+++++
T Consensus 275 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 305 (323)
T cd05276 275 LAAAFREHVWPLFASGRI--RPVIDKVFPLEEA 305 (323)
T ss_pred HHHHHHHHHHHHHHCCCc--cCCcceEEcHHHH
Confidence 125678889999988 4456778887754
No 103
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.61 E-value=2.6e-07 Score=64.41 Aligned_cols=82 Identities=13% Similarity=0.249 Sum_probs=64.2
Q ss_pred CCCcEEEEccCCh-----HHH-HHHHHhhhcCCEEEEEcCC-CCC--ccccchhhhh-cCeEEEEeeccCCCHH-HHHHH
Q 040104 15 TGIDVSFDCAGFN-----KTM-STALSATRAGGKVCLVGMG-HHE--MTVPLTPAAA-REVDVVGVFRYKNTWP-LCLEF 83 (105)
Q Consensus 15 ~g~d~vid~~g~~-----~~~-~~~~~~l~~~G~~v~~g~~-~~~--~~~~~~~~~~-~~~~i~~~~~~~~~~~-~~~~~ 83 (105)
+++|++|+|+|.+ .++ +++++.+++||+++.+|.. .++ .+++...++. +++++.|+...+..++ ++.++
T Consensus 247 ~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG~~e~t~~~~~v~~~~gVti~Gv~n~P~~~p~~As~l 326 (509)
T PRK09424 247 KEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGGNCELTVPGEVVVTDNGVTIIGYTDLPSRLPTQSSQL 326 (509)
T ss_pred CCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCCCcccccCccceEeECCEEEEEeCCCchhHHHHHHHH
Confidence 4799999999963 354 9999999999999999985 343 3444455555 8999999887755666 59999
Q ss_pred HHcCCCCCCCcee
Q 040104 84 LRSGKIDIKPLVT 96 (105)
Q Consensus 84 v~~g~i~~~~~i~ 96 (105)
++++.+++.++++
T Consensus 327 la~~~i~l~~lIt 339 (509)
T PRK09424 327 YGTNLVNLLKLLC 339 (509)
T ss_pred HHhCCccHHHHhc
Confidence 9999887766666
No 104
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=98.61 E-value=3e-07 Score=59.66 Aligned_cols=96 Identities=26% Similarity=0.497 Sum_probs=69.3
Q ss_pred HHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCcc-ccchhhhhcCeEEEEeecc---------
Q 040104 5 EVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMT-VPLTPAAAREVDVVGVFRY--------- 73 (105)
Q Consensus 5 ~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~-~~~~~~~~~~~~i~~~~~~--------- 73 (105)
..+.+.+.+ ++++|.+++++|+.. ...++++++++|+++.+|....... ++......++.++.+....
T Consensus 196 ~~~~i~~~~~~~~~d~v~~~~g~~~-~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (323)
T cd08241 196 LRERVKALTGGRGVDVVYDPVGGDV-FEASLRSLAWGGRLLVIGFASGEIPQIPANLLLLKNISVVGVYWGAYARREPEL 274 (323)
T ss_pred HHHHHHHHcCCCCcEEEEECccHHH-HHHHHHhhccCCEEEEEccCCCCcCcCCHHHHhhcCcEEEEEecccccchhHHH
Confidence 445666666 468999999999854 8899999999999999987543322 3333445678888876533
Q ss_pred -CCCHHHHHHHHHcCCCCCCCceeeeeeCCC
Q 040104 74 -KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103 (105)
Q Consensus 74 -~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~ 103 (105)
...+.++++++.++.+ .++.++.|++++
T Consensus 275 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 303 (323)
T cd08241 275 LRANLAELFDLLAEGKI--RPHVSAVFPLEQ 303 (323)
T ss_pred HHHHHHHHHHHHHCCCc--ccccceEEcHHH
Confidence 1356778899999988 455677787664
No 105
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=98.60 E-value=2.2e-07 Score=61.00 Aligned_cols=96 Identities=21% Similarity=0.291 Sum_probs=66.7
Q ss_pred HHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC-----------ccccchhhhhcCeEEEEeecc--
Q 040104 7 EKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE-----------MTVPLTPAAAREVDVVGVFRY-- 73 (105)
Q Consensus 7 ~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-----------~~~~~~~~~~~~~~i~~~~~~-- 73 (105)
+.+....++++|.++|++|+.. +..++++++++|+++.+|..... ..++ ...+.++.++.++...
T Consensus 198 ~~~~~~~~~~vd~v~~~~g~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 275 (329)
T cd08250 198 EVLKKEYPKGVDVVYESVGGEM-FDTCVDNLALKGRLIVIGFISGYQSGTGPSPVKGATLP-PKLLAKSASVRGFFLPHY 275 (329)
T ss_pred HHHHHhcCCCCeEEEECCcHHH-HHHHHHHhccCCeEEEEecccCCcccCccccccccccc-HHHhhcCceEEEEEhHHH
Confidence 4444444568999999999754 89999999999999999865321 0111 2235677888876543
Q ss_pred ----CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 74 ----KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 74 ----~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
...+.++++++.+|.+++.....++|+++++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 310 (329)
T cd08250 276 AKLIPQHLDRLLQLYQRGKLVCEVDPTRFRGLESV 310 (329)
T ss_pred HHHHHHHHHHHHHHHHCCCeeeeECCccccCHHHH
Confidence 3457889999999988653334445777654
No 106
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=98.57 E-value=6.9e-07 Score=58.79 Aligned_cols=95 Identities=14% Similarity=0.201 Sum_probs=65.6
Q ss_pred HHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc------C-----
Q 040104 6 VEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY------K----- 74 (105)
Q Consensus 6 ~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~------~----- 74 (105)
.+.++...++++|+++|++|+...+..++++++++|+++.+|... ..++...+..++.++.+.... .
T Consensus 207 ~~~i~~~~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (336)
T cd08252 207 AEQLEALGIEPVDYIFCLTDTDQHWDAMAELIAPQGHICLIVDPQ--EPLDLGPLKSKSASFHWEFMFTRSMFQTPDMIE 284 (336)
T ss_pred HHHHHhhCCCCCCEEEEccCcHHHHHHHHHHhcCCCEEEEecCCC--CcccchhhhcccceEEEEEeeccccccccchhh
Confidence 344554334689999999997666999999999999999998653 334444455677777765432 1
Q ss_pred --CCHHHHHHHHHcCCCCCCCcee---eeeeCCCC
Q 040104 75 --NTWPLCLEFLRSGKIDIKPLVT---HRFGFSQK 104 (105)
Q Consensus 75 --~~~~~~~~~v~~g~i~~~~~i~---~~~~l~~~ 104 (105)
..+.++++++.+|.+++ .++ +.++++++
T Consensus 285 ~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~ 317 (336)
T cd08252 285 QHEILNEVADLLDAGKLKT--TLTETLGPINAENL 317 (336)
T ss_pred HHHHHHHHHHHHHCCCEec--ceeeeecCCCHHHH
Confidence 23678999999998853 322 23566653
No 107
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=98.56 E-value=3.7e-07 Score=59.30 Aligned_cols=97 Identities=23% Similarity=0.451 Sum_probs=68.6
Q ss_pred HHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-------CCC
Q 040104 5 EVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-------KNT 76 (105)
Q Consensus 5 ~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~ 76 (105)
..+.+++.+ ++++|.+++|+|+.. ....+++++++|+++.+|.......++...++.++.++.+...+ ...
T Consensus 201 ~~~~~~~~~~~~~~d~vi~~~~~~~-~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (325)
T cd08253 201 LADRILAATAGQGVDVIIEVLANVN-LAKDLDVLAPGGRIVVYGSGGLRGTIPINPLMAKEASIRGVLLYTATPEERAAA 279 (325)
T ss_pred HHHHHHHHcCCCceEEEEECCchHH-HHHHHHhhCCCCEEEEEeecCCcCCCChhHHHhcCceEEeeehhhcCHHHHHHH
Confidence 445666666 468999999999876 88899999999999999865433344445545677777765433 224
Q ss_pred HHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 77 WPLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 77 ~~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
+.++.+++.++.+ ++..+++|+++++
T Consensus 280 ~~~~~~~~~~~~i--~~~~~~~~~~~~~ 305 (325)
T cd08253 280 AEAIAAGLADGAL--RPVIAREYPLEEA 305 (325)
T ss_pred HHHHHHHHHCCCc--cCccccEEcHHHH
Confidence 5666778888887 4446667887653
No 108
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=98.56 E-value=5.6e-07 Score=58.99 Aligned_cols=96 Identities=17% Similarity=0.184 Sum_probs=64.0
Q ss_pred HHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-CccccchhhhhcCeEEEEeecc---CCCHHHHHH
Q 040104 7 EKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAAREVDVVGVFRY---KNTWPLCLE 82 (105)
Q Consensus 7 ~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~ 82 (105)
+.+++..++++|+++||+|+.. +..++++++++|+++.+|.... ..++++..++.+++++.++... .....++++
T Consensus 204 ~~~~~~~~~~~d~vld~~g~~~-~~~~~~~l~~~G~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (326)
T cd08289 204 ESIKPLEKQRWAGAVDPVGGKT-LAYLLSTLQYGGSVAVSGLTGGGEVETTVFPFILRGVNLLGIDSVECPMELRRRIWR 282 (326)
T ss_pred HHHHhhccCCcCEEEECCcHHH-HHHHHHHhhcCCEEEEEeecCCCCCCcchhhhhhccceEEEEEeEecCchHHHHHHH
Confidence 3444454568999999999864 9999999999999999997532 2334455566889999887532 223444544
Q ss_pred HHHcCCCCC---CCceeeeeeCCCC
Q 040104 83 FLRSGKIDI---KPLVTHRFGFSQK 104 (105)
Q Consensus 83 ~v~~g~i~~---~~~i~~~~~l~~~ 104 (105)
.+.+ .+.+ ...++++|+++++
T Consensus 283 ~~~~-~~~~~~~~~~~~~~~~l~~~ 306 (326)
T cd08289 283 RLAT-DLKPTQLLNEIKQEITLDEL 306 (326)
T ss_pred HHHh-hcCccccccccceEeeHHHH
Confidence 4432 3321 2345778888764
No 109
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=98.55 E-value=5.3e-07 Score=58.36 Aligned_cols=97 Identities=18% Similarity=0.283 Sum_probs=67.6
Q ss_pred HHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC-ccccchhhhhcCeEEEEeecc---------
Q 040104 5 EVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE-MTVPLTPAAAREVDVVGVFRY--------- 73 (105)
Q Consensus 5 ~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~--------- 73 (105)
..+.+++.+ ++++|.+++|+|+.. ...++++++++|+++.+|..... ..++...+..+++++.+....
T Consensus 193 ~~~~~~~~~~~~~~d~vl~~~~~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (320)
T cd05286 193 FVERVREITGGRGVDVVYDGVGKDT-FEGSLDSLRPRGTLVSFGNASGPVPPFDLLRLSKGSLFLTRPSLFHYIATREEL 271 (320)
T ss_pred HHHHHHHHcCCCCeeEEEECCCcHh-HHHHHHhhccCcEEEEEecCCCCCCccCHHHHHhcCcEEEEEehhhhcCCHHHH
Confidence 445666666 468999999999864 89999999999999999865432 223444444677777643221
Q ss_pred CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 74 KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 74 ~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
...+.++++++.++++++ ..++.|+++++
T Consensus 272 ~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~ 300 (320)
T cd05286 272 LARAAELFDAVASGKLKV--EIGKRYPLADA 300 (320)
T ss_pred HHHHHHHHHHHHCCCCcC--cccceEcHHHH
Confidence 234567888999998853 45667887653
No 110
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.54 E-value=6.1e-07 Score=58.40 Aligned_cols=94 Identities=26% Similarity=0.429 Sum_probs=66.4
Q ss_pred HHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc----------
Q 040104 5 EVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY---------- 73 (105)
Q Consensus 5 ~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~---------- 73 (105)
..+.+.+.+ ++++|.++||+|+.. ...++.+++++|+++.+|... ..+......+++++.+....
T Consensus 199 ~~~~~~~~~~~~~~d~v~~~~~~~~-~~~~~~~l~~~g~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (326)
T cd08272 199 VVEYVAEHTGGRGFDVVFDTVGGET-LDASFEAVALYGRVVSILGGA---THDLAPLSFRNATYSGVFTLLPLLTGEGRA 274 (326)
T ss_pred HHHHHHHhcCCCCCcEEEECCChHH-HHHHHHHhccCCEEEEEecCC---ccchhhHhhhcceEEEEEcccccccccchh
Confidence 345566666 458999999999865 889999999999999998653 22222233567777665422
Q ss_pred --CCCHHHHHHHHHcCCCCCCCcee-eeeeCCCC
Q 040104 74 --KNTWPLCLEFLRSGKIDIKPLVT-HRFGFSQK 104 (105)
Q Consensus 74 --~~~~~~~~~~v~~g~i~~~~~i~-~~~~l~~~ 104 (105)
...+.++++++.++++ +++++ +.|+++++
T Consensus 275 ~~~~~~~~~~~~l~~~~l--~~~~~~~~~~~~~~ 306 (326)
T cd08272 275 HHGEILREAARLVERGQL--RPLLDPRTFPLEEA 306 (326)
T ss_pred hHHHHHHHHHHHHHCCCc--ccccccceecHHHH
Confidence 2357778889999988 44555 77887653
No 111
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=98.53 E-value=4.6e-07 Score=59.28 Aligned_cols=87 Identities=17% Similarity=0.199 Sum_probs=60.1
Q ss_pred CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-CccccchhhhhcCeEEEEeecc---CCCH----HHHHHHHH
Q 040104 14 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAAREVDVVGVFRY---KNTW----PLCLEFLR 85 (105)
Q Consensus 14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~---~~~~----~~~~~~v~ 85 (105)
++++|+++|++|+.. +..++++++++|+++.+|.... +..+++..+..+++++.++... .... +.+.+++.
T Consensus 211 ~~~~d~vi~~~~~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (325)
T cd05280 211 KARWAGAIDTVGGDV-LANLLKQTKYGGVVASCGNAAGPELTTTVLPFILRGVSLLGIDSVNCPMELRKQVWQKLATEWK 289 (325)
T ss_pred CCCccEEEECCchHH-HHHHHHhhcCCCEEEEEecCCCCccccccchheeeeeEEEEEEeecCchhHHHHHHHHHHHHHh
Confidence 458999999999865 9999999999999999997542 2344545555788888886543 1223 33444445
Q ss_pred cCCCCCCCceeeeeeCCCC
Q 040104 86 SGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 86 ~g~i~~~~~i~~~~~l~~~ 104 (105)
.+. .+.+.++||++++
T Consensus 290 ~~~---~~~~~~~~~~~~~ 305 (325)
T cd05280 290 PDL---LEIVVREISLEEL 305 (325)
T ss_pred cCC---ccceeeEecHHHH
Confidence 552 3346668888764
No 112
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=98.50 E-value=7.1e-07 Score=58.67 Aligned_cols=86 Identities=16% Similarity=0.177 Sum_probs=64.1
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC-ccccchhhhhcCeEEEEeecc-CCCHHHHHHHHHcCCCCCC
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE-MTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRSGKIDIK 92 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~g~i~~~ 92 (105)
+++|.++++++....++.++++++++|+++.+|..... ..+++.. ..++..+.++... ...+.++++++.++.+++
T Consensus 224 ~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~l~~~~~l~~- 301 (329)
T cd08298 224 EPLDAAIIFAPVGALVPAALRAVKKGGRVVLAGIHMSDIPAFDYEL-LWGEKTIRSVANLTRQDGEEFLKLAAEIPIKP- 301 (329)
T ss_pred CcccEEEEcCCcHHHHHHHHHHhhcCCEEEEEcCCCCCCCccchhh-hhCceEEEEecCCCHHHHHHHHHHHHcCCCCc-
Confidence 47999999877777799999999999999999854321 1223322 4567788777655 667889999999998854
Q ss_pred CceeeeeeCCCC
Q 040104 93 PLVTHRFGFSQK 104 (105)
Q Consensus 93 ~~i~~~~~l~~~ 104 (105)
. .++|+++++
T Consensus 302 -~-~~~~~~~~~ 311 (329)
T cd08298 302 -E-VETYPLEEA 311 (329)
T ss_pred -e-EEEEeHHHH
Confidence 3 468888764
No 113
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.50 E-value=1.2e-06 Score=57.33 Aligned_cols=97 Identities=21% Similarity=0.296 Sum_probs=68.2
Q ss_pred HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC--c---------------cccchhhhhcCeEE
Q 040104 5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE--M---------------TVPLTPAAAREVDV 67 (105)
Q Consensus 5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~--~---------------~~~~~~~~~~~~~i 67 (105)
..+.+++.+++++|+++||+|+.. ...++++++++|+++.+|..... . .+....+..++.++
T Consensus 195 ~~~~~~~~~~~~~d~v~~~~g~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (337)
T cd08275 195 YVEEVKKISPEGVDIVLDALGGED-TRKSYDLLKPMGRLVVYGAANLVTGEKRSWFKLAKKWWNRPKVDPMKLISENKSV 273 (337)
T ss_pred HHHHHHHHhCCCceEEEECCcHHH-HHHHHHhhccCcEEEEEeecCCcCcccccccccccccccccccCHHHHhhcCceE
Confidence 445566666668999999999875 89999999999999999864321 1 11123446677888
Q ss_pred EEeecc---------CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 68 VGVFRY---------KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 68 ~~~~~~---------~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
.++... ...+.++++++.++.+ ++..++.|+++++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 317 (337)
T cd08275 274 LGFNLGWLFEERELLTEVMDKLLKLYEEGKI--KPKIDSVFPFEEV 317 (337)
T ss_pred EEeechhhhhChHHHHHHHHHHHHHHHCCCC--CCceeeEEcHHHH
Confidence 776432 1236778889999988 4456678887653
No 114
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=98.47 E-value=1.4e-06 Score=56.65 Aligned_cols=96 Identities=21% Similarity=0.390 Sum_probs=68.9
Q ss_pred HHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-CccccchhhhhcCeEEEEeeccC--------
Q 040104 5 EVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAAREVDVVGVFRYK-------- 74 (105)
Q Consensus 5 ~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~~-------- 74 (105)
..+.+++.. ++++|.+++++|+.. +..++.+++++|+++.+|.... ...+++..+..+++++.+.....
T Consensus 196 ~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (325)
T TIGR02824 196 FVEVVKAETGGKGVDVILDIVGGSY-LNRNIKALALDGRIVQIGFQGGRKAELDLGPLLAKRLTITGSTLRARPVAEKAA 274 (325)
T ss_pred HHHHHHHHcCCCCeEEEEECCchHH-HHHHHHhhccCcEEEEEecCCCCcCCCChHHHHhcCCEEEEEehhhcchhhhHH
Confidence 445566666 458999999999865 8899999999999999986432 22445555557899988876431
Q ss_pred ---CCHHHHHHHHHcCCCCCCCceeeeeeCCC
Q 040104 75 ---NTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103 (105)
Q Consensus 75 ---~~~~~~~~~v~~g~i~~~~~i~~~~~l~~ 103 (105)
..+.++++++.++++ ++..++.|++++
T Consensus 275 ~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~ 304 (325)
T TIGR02824 275 IAAELREHVWPLLASGRV--RPVIDKVFPLED 304 (325)
T ss_pred HHHHHHHHHHHHHHCCcc--cCccccEEeHHH
Confidence 124567788999988 444666777765
No 115
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=98.43 E-value=1.1e-06 Score=57.83 Aligned_cols=87 Identities=22% Similarity=0.363 Sum_probs=66.6
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC-ccccchhhhhcCeEEEEeecc-CCCHHHHHHHHHcCCCCCC
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE-MTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRSGKIDIK 92 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~g~i~~~ 92 (105)
+++|+++|+++.......++++++++|+++.+|..... .......+..++.++.++... ...++++++++.++.+++
T Consensus 224 ~~~d~vi~~~~~~~~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~- 302 (330)
T cd08245 224 GGADVILVTVVSGAAAEAALGGLRRGGRIVLVGLPESPPFSPDIFPLIMKRQSIAGSTHGGRADLQEALDFAAEGKVKP- 302 (330)
T ss_pred CCCCEEEECCCcHHHHHHHHHhcccCCEEEEECCCCCCccccchHHHHhCCCEEEEeccCCHHHHHHHHHHHHcCCCcc-
Confidence 46999999988777789999999999999999864322 222344566788888888776 678888999999999853
Q ss_pred CceeeeeeCCCC
Q 040104 93 PLVTHRFGFSQK 104 (105)
Q Consensus 93 ~~i~~~~~l~~~ 104 (105)
. .++|+++++
T Consensus 303 -~-~~~~~~~~~ 312 (330)
T cd08245 303 -M-IETFPLDQA 312 (330)
T ss_pred -e-EEEEcHHHH
Confidence 3 357887653
No 116
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=98.41 E-value=2e-06 Score=57.03 Aligned_cols=97 Identities=22% Similarity=0.263 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhc--CCEEEEEcCCCCCccccchhhhhcCeEEEEee-----cc---
Q 040104 4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRA--GGKVCLVGMGHHEMTVPLTPAAAREVDVVGVF-----RY--- 73 (105)
Q Consensus 4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~--~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~-----~~--- 73 (105)
++.+.+++.+++++|+++|++|++..+..+++++++ +|+++.+|.......+. .............. ..
T Consensus 209 ~~~~~l~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~g~~v~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 287 (339)
T cd08249 209 DVVEDIRAATGGKLRYALDCISTPESAQLCAEALGRSGGGKLVSLLPVPEETEPR-KGVKVKFVLGYTVFGEIPEDREFG 287 (339)
T ss_pred hHHHHHHHhcCCCeeEEEEeeccchHHHHHHHHHhccCCCEEEEecCCCccccCC-CCceEEEEEeeeecccccccccch
Confidence 455667777777899999999985569999999999 99999998654322111 01111111111111 11
Q ss_pred CCCHHHHHHHHHcCCCCCCCceeeeee--CCC
Q 040104 74 KNTWPLCLEFLRSGKIDIKPLVTHRFG--FSQ 103 (105)
Q Consensus 74 ~~~~~~~~~~v~~g~i~~~~~i~~~~~--l~~ 103 (105)
...+.+++++++++++++.+ ..+++ +++
T Consensus 288 ~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~ 317 (339)
T cd08249 288 EVFWKYLPELLEEGKLKPHP--VRVVEGGLEG 317 (339)
T ss_pred HHHHHHHHHHHHcCCccCCC--ceecCCcHHH
Confidence 34577899999999996542 23455 554
No 117
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=98.38 E-value=4e-06 Score=53.26 Aligned_cols=71 Identities=27% Similarity=0.433 Sum_probs=55.3
Q ss_pred CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCcccc-chhhhhcCeEEEEeecc-CCCHHHHHHHH
Q 040104 14 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVP-LTPAAAREVDVVGVFRY-KNTWPLCLEFL 84 (105)
Q Consensus 14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~-~~~~~~~~~~i~~~~~~-~~~~~~~~~~v 84 (105)
++++|++++++|....+..++++++++|+++.+|......... ....+.+++++.++..+ ..+++++++++
T Consensus 199 ~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (271)
T cd05188 199 GGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGGTSGGPPLDDLRRLLFKELTIIGSTGGTREDFEEALDLL 271 (271)
T ss_pred CCCCCEEEECCCCHHHHHHHHHhcccCCEEEEEccCCCCCCcccHHHHHhcceEEEEeecCCHHHHHHHHhhC
Confidence 4689999999998555899999999999999998755332222 34567899999998877 66788877653
No 118
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=98.37 E-value=3.3e-06 Score=53.89 Aligned_cols=96 Identities=20% Similarity=0.232 Sum_probs=65.8
Q ss_pred HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC--ccccchhhhhcCeEEEEeecc-------
Q 040104 4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE--MTVPLTPAAAREVDVVGVFRY------- 73 (105)
Q Consensus 4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~--~~~~~~~~~~~~~~i~~~~~~------- 73 (105)
+..+++++.+ ++++|.++|++|+.. +..++++++++|+++.+|..... ..+.... +.++..+......
T Consensus 166 ~~~~~~~~~~~~~~~d~vi~~~~~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 243 (293)
T cd05195 166 SFADGILRATGGRGVDVVLNSLSGEL-LRASWRCLAPFGRFVEIGKRDILSNSKLGMRP-FLRNVSFSSVDLDQLARERP 243 (293)
T ss_pred hHHHHHHHHhCCCCceEEEeCCCchH-HHHHHHhcccCceEEEeeccccccCCccchhh-hccCCeEEEEeHHHHhhhCh
Confidence 3456677776 568999999999984 99999999999999999865421 1222222 2344454443211
Q ss_pred ---CCCHHHHHHHHHcCCCCCCCceeeeeeCCC
Q 040104 74 ---KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103 (105)
Q Consensus 74 ---~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~ 103 (105)
...+.++++++.++++ ++.+++++++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 274 (293)
T cd05195 244 ELLRELLREVLELLEAGVL--KPLPPTVVPSAS 274 (293)
T ss_pred HHHHHHHHHHHHHHHCCCc--ccCCCeeechhh
Confidence 2356788899999988 556676777765
No 119
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=98.37 E-value=8.9e-07 Score=57.18 Aligned_cols=84 Identities=21% Similarity=0.338 Sum_probs=61.7
Q ss_pred CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc--CCCHHHHHHHHHcCCCCC
Q 040104 14 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY--KNTWPLCLEFLRSGKIDI 91 (105)
Q Consensus 14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~v~~g~i~~ 91 (105)
++++|.++|++|+.. ...++++++++|+++.+|....... ....++.++...... ...+.++++++.++.+
T Consensus 206 ~~~~d~v~~~~~~~~-~~~~~~~l~~~g~~v~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 278 (309)
T cd05289 206 PGGVDAVLDTVGGET-LARSLALVKPGGRLVSIAGPPPAEQ----AAKRRGVRAGFVFVEPDGEQLAELAELVEAGKL-- 278 (309)
T ss_pred CCCceEEEECCchHH-HHHHHHHHhcCcEEEEEcCCCcchh----hhhhccceEEEEEecccHHHHHHHHHHHHCCCE--
Confidence 457999999999885 8999999999999999986543211 223445555544322 4678889999999987
Q ss_pred CCceeeeeeCCCC
Q 040104 92 KPLVTHRFGFSQK 104 (105)
Q Consensus 92 ~~~i~~~~~l~~~ 104 (105)
+++++++|+++++
T Consensus 279 ~~~~~~~~~~~~~ 291 (309)
T cd05289 279 RPVVDRVFPLEDA 291 (309)
T ss_pred EEeeccEEcHHHH
Confidence 5557788888764
No 120
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=98.36 E-value=6e-06 Score=54.39 Aligned_cols=91 Identities=12% Similarity=0.238 Sum_probs=61.4
Q ss_pred HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc------C----
Q 040104 5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY------K---- 74 (105)
Q Consensus 5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~------~---- 74 (105)
..+.+++..++++|+++|++++...+..++++++++|+++.++.. ..++...+..++.++.+.... +
T Consensus 205 ~~~~i~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~G~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (336)
T TIGR02817 205 LKAQLEKLGLEAVSYVFSLTHTDQHFKEIVELLAPQGRFALIDDP---AELDISPFKRKSISLHWEFMFTRSMFQTADMI 281 (336)
T ss_pred HHHHHHHhcCCCCCEEEEcCCcHHHHHHHHHHhccCCEEEEEccc---ccccchhhhhcceEEEEEEeecccccchhhhh
Confidence 345566644568999999987766689999999999999988532 234444444455555542211 0
Q ss_pred ---CCHHHHHHHHHcCCCCCCCceeeeee
Q 040104 75 ---NTWPLCLEFLRSGKIDIKPLVTHRFG 100 (105)
Q Consensus 75 ---~~~~~~~~~v~~g~i~~~~~i~~~~~ 100 (105)
..++++++++.+|+++ +.++++|+
T Consensus 282 ~~~~~~~~~~~l~~~~~l~--~~~~~~~~ 308 (336)
T TIGR02817 282 EQHHLLNRVARLVDAGKIR--TTLAETFG 308 (336)
T ss_pred hhHHHHHHHHHHHHCCCee--ccchhccC
Confidence 3478899999999884 44555554
No 121
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=98.28 E-value=4e-06 Score=53.52 Aligned_cols=96 Identities=21% Similarity=0.289 Sum_probs=64.3
Q ss_pred HHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC--CccccchhhhhcCeEEEEeecc--------
Q 040104 5 EVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH--EMTVPLTPAAAREVDVVGVFRY-------- 73 (105)
Q Consensus 5 ~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~-------- 73 (105)
..+.+.+.+ ++++|.++|++|+. .+..++++++++|+++.+|.... ...++... +.++.++.+....
T Consensus 163 ~~~~~~~~~~~~~~d~vi~~~~~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 240 (288)
T smart00829 163 FADEILRATGGRGVDVVLNSLAGE-FLDASLRCLAPGGRFVEIGKRDIRDNSQLGMAP-FRRNVSYHAVDLDALEEGPDR 240 (288)
T ss_pred HHHHHHHHhCCCCcEEEEeCCCHH-HHHHHHHhccCCcEEEEEcCcCCccccccchhh-hcCCceEEEEEHHHhhcChHH
Confidence 445566666 45899999999965 48999999999999999986431 22233322 3455555544221
Q ss_pred -CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 74 -KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 74 -~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
...+.++++++.++++++ ...+.|+++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 270 (288)
T smart00829 241 IRELLAEVLELFAEGVLRP--LPVTVFPISDV 270 (288)
T ss_pred HHHHHHHHHHHHHCCCccC--cCceEEcHHHH
Confidence 234677888999998854 34567887653
No 122
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=98.25 E-value=1.3e-06 Score=56.35 Aligned_cols=97 Identities=18% Similarity=0.297 Sum_probs=63.5
Q ss_pred HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC--CccccchhhhhcCeEEE-----Eeecc--
Q 040104 4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH--EMTVPLTPAAAREVDVV-----GVFRY-- 73 (105)
Q Consensus 4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~~~~i~-----~~~~~-- 73 (105)
+..+.+.+.+ ++++|.++|++++.. ...++++++++|+++.+|.... ...+....+ .++..+. +.+..
T Consensus 176 ~~~~~i~~~~~~~~~d~v~~~~~~~~-~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 253 (303)
T cd08251 176 DFEEEIMRLTGGRGVDVVINTLSGEA-IQKGLNCLAPGGRYVEIAMTALKSAPSVDLSVL-SNNQSFHSVDLRKLLLLDP 253 (303)
T ss_pred cHHHHHHHHcCCCCceEEEECCcHHH-HHHHHHHhccCcEEEEEeccCCCccCccChhHh-hcCceEEEEehHHhhhhCH
Confidence 3455666666 468999999998654 8999999999999999986432 122333222 2222222 22111
Q ss_pred ---CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 74 ---KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 74 ---~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
.+.+.++++++++|.+ +++.++.|+++++
T Consensus 254 ~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~ 285 (303)
T cd08251 254 EFIADYQAEMVSLVEEGEL--RPTVSRIFPFDDI 285 (303)
T ss_pred HHHHHHHHHHHHHHHCCCc--cCCCceEEcHHHH
Confidence 2457778899999988 4456678887653
No 123
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.19 E-value=5.8e-06 Score=54.26 Aligned_cols=88 Identities=23% Similarity=0.320 Sum_probs=58.9
Q ss_pred CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCcc--ccc------------hhhhhcCeEEEEee--cc----
Q 040104 14 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMT--VPL------------TPAAAREVDVVGVF--RY---- 73 (105)
Q Consensus 14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~--~~~------------~~~~~~~~~i~~~~--~~---- 73 (105)
++++|.++||+|+.. +..++++++++|+++.+|....... +.. ......+..+.+.. ..
T Consensus 201 ~~~~d~vl~~~~~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (331)
T cd08273 201 PGGVDVVFDGVGGES-YEESYAALAPGGTLVCYGGNSSLLQGRRSLAALGSLLARLAKLKLLPTGRRATFYYVWRDRAED 279 (331)
T ss_pred CCCceEEEECCchHH-HHHHHHHhcCCCEEEEEccCCCCCCccccccchhhhhhhhhhhcceeccceeEEEeechhcccC
Confidence 458999999999987 8999999999999999986542211 111 01122222222221 11
Q ss_pred ----CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 74 ----KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 74 ----~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
.+.+.++++++.+|.++ +.++++|+++++
T Consensus 280 p~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~ 312 (331)
T cd08273 280 PKLFRQDLTELLDLLAKGKIR--PKIAKRLPLSEV 312 (331)
T ss_pred HHHHHHHHHHHHHHHHCCCcc--CCcceEEcHHHH
Confidence 35678899999999884 456778888763
No 124
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.18 E-value=1.6e-05 Score=51.73 Aligned_cols=96 Identities=25% Similarity=0.387 Sum_probs=64.5
Q ss_pred HHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-CccccchhhhhcCeEEEEeecc---------
Q 040104 5 EVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAAREVDVVGVFRY--------- 73 (105)
Q Consensus 5 ~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~--------- 73 (105)
..+.+.+.+ +.++|.+++++|+.. ...++++++++|+++.+|.... ...++....+.++.++.+....
T Consensus 201 ~~~~~~~~~~~~~~d~vi~~~~~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (328)
T cd08268 201 LVAEVLRITGGKGVDVVFDPVGGPQ-FAKLADALAPGGTLVVYGALSGEPTPFPLKAALKKSLTFRGYSLDEITLDPEAR 279 (328)
T ss_pred HHHHHHHHhCCCCceEEEECCchHh-HHHHHHhhccCCEEEEEEeCCCCCCCCchHHHhhcCCEEEEEecccccCCHHHH
Confidence 344555555 458999999999865 8999999999999999986432 2233333346677777766432
Q ss_pred CCCHHHHHHHHHcCCCCCCCceeeeeeCCC
Q 040104 74 KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103 (105)
Q Consensus 74 ~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~ 103 (105)
...+..+.+++.++.++ ++.++.|++++
T Consensus 280 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 307 (328)
T cd08268 280 RRAIAFILDGLASGALK--PVVDRVFPFDD 307 (328)
T ss_pred HHHHHHHHHHHHCCCCc--CCcccEEcHHH
Confidence 12344555667788774 44566777765
No 125
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.16 E-value=5.2e-06 Score=54.14 Aligned_cols=96 Identities=22% Similarity=0.307 Sum_probs=62.0
Q ss_pred HHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccc--hhhhhcCeEEEEeecc--------
Q 040104 5 EVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPL--TPAAAREVDVVGVFRY-------- 73 (105)
Q Consensus 5 ~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~--~~~~~~~~~i~~~~~~-------- 73 (105)
..+++++.+ ++++|.+++++|+.. ...++++++++|+++.+|.......... ....++++.+.+.+..
T Consensus 197 ~~~~~~~~~~~~~~d~vi~~~~~~~-~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (325)
T cd08271 197 VCERIKEITGGRGVDAVLDTVGGET-AAALAPTLAFNGHLVCIQGRPDASPDPPFTRALSVHEVALGAAHDHGDPAAWQD 275 (325)
T ss_pred HHHHHHHHcCCCCCcEEEECCCcHh-HHHHHHhhccCCEEEEEcCCCCCcchhHHhhcceEEEEEecccccccchhhHHH
Confidence 445566666 468999999999876 6789999999999999975432111111 1123444454444322
Q ss_pred -CCCHHHHHHHHHcCCCCCCCceeeeeeCCC
Q 040104 74 -KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103 (105)
Q Consensus 74 -~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~ 103 (105)
.+.+.++++++.+++++ ++.+++|++++
T Consensus 276 ~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~ 304 (325)
T cd08271 276 LRYAGEELLELLAAGKLE--PLVIEVLPFEQ 304 (325)
T ss_pred HHHHHHHHHHHHHCCCee--eccceEEcHHH
Confidence 12356788899999884 34456777765
No 126
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=98.11 E-value=1.5e-05 Score=53.01 Aligned_cols=89 Identities=16% Similarity=0.187 Sum_probs=57.7
Q ss_pred CCCCcEEEEccCChHHHHHHHHhhh---cCCEEEEEcC-CCCCc---c--------ccchh----hhhcCeEEEEeecc-
Q 040104 14 GTGIDVSFDCAGFNKTMSTALSATR---AGGKVCLVGM-GHHEM---T--------VPLTP----AAAREVDVVGVFRY- 73 (105)
Q Consensus 14 ~~g~d~vid~~g~~~~~~~~~~~l~---~~G~~v~~g~-~~~~~---~--------~~~~~----~~~~~~~i~~~~~~- 73 (105)
++++|++|||+|+......++++++ ++|+++.++. ...+. . +.... ..++..++......
T Consensus 223 ~~~~d~vl~~~g~~~~~~~~~~~l~~~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (352)
T cd08247 223 QGKFDLILDCVGGYDLFPHINSILKPKSKNGHYVTIVGDYKANYKKDTFNSWDNPSANARKLFGSLGLWSYNYQFFLLDP 302 (352)
T ss_pred CCCceEEEECCCCHHHHHHHHHHhCccCCCCEEEEEeCCCcccccchhhhhccccchhhhhhhhhhcCCCcceEEEEecC
Confidence 4689999999998656889999999 9999998742 21110 0 01111 11333344333221
Q ss_pred -CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 74 -KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 74 -~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
...+.++++++.+|++ +++++++|+++++
T Consensus 303 ~~~~~~~~~~~~~~~~l--~~~~~~~~~l~~~ 332 (352)
T cd08247 303 NADWIEKCAELIADGKV--KPPIDSVYPFEDY 332 (352)
T ss_pred CHHHHHHHHHHHhCCCe--EeeeccEecHHHH
Confidence 2357889999999988 5556778888754
No 127
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=98.11 E-value=1.7e-05 Score=51.96 Aligned_cols=93 Identities=17% Similarity=0.276 Sum_probs=65.1
Q ss_pred HHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-CccccchhhhhcCeEEEEeecc-------CCCHHH
Q 040104 8 KIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAAREVDVVGVFRY-------KNTWPL 79 (105)
Q Consensus 8 ~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~ 79 (105)
.+++.+++++|.++|++|+.. +..++..++.+|+++.+|.... +..+++..++.++.++.+.... ...+..
T Consensus 204 ~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (324)
T cd08288 204 PGRPLQKERWAGAVDTVGGHT-LANVLAQTRYGGAVAACGLAGGADLPTTVMPFILRGVTLLGIDSVMAPIERRRAAWAR 282 (324)
T ss_pred hhhhhccCcccEEEECCcHHH-HHHHHHHhcCCCEEEEEEecCCCCCCcchhhhhccccEEEEEEeecccchhhHHHHHH
Confidence 344455557899999999855 7889999999999999996432 2234444455788998886432 224666
Q ss_pred HHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 80 CLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 80 ~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
+.+++.++.+ .+ +.+++|++++
T Consensus 283 ~~~~~~~~~~--~~-i~~~~~~~~~ 304 (324)
T cd08288 283 LARDLDPALL--EA-LTREIPLADV 304 (324)
T ss_pred HHHHHhcCCc--cc-cceeecHHHH
Confidence 7778888877 33 3568888764
No 128
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.05 E-value=1.4e-05 Score=52.05 Aligned_cols=89 Identities=21% Similarity=0.309 Sum_probs=55.3
Q ss_pred CCCCcEEEEccCCh-HHHHHHHHhhhcCCEEEEEcCCCCCccccc----hhhhhcCeEEEEeecc--CCCHHHHHHHHHc
Q 040104 14 GTGIDVSFDCAGFN-KTMSTALSATRAGGKVCLVGMGHHEMTVPL----TPAAAREVDVVGVFRY--KNTWPLCLEFLRS 86 (105)
Q Consensus 14 ~~g~d~vid~~g~~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~----~~~~~~~~~i~~~~~~--~~~~~~~~~~v~~ 86 (105)
++++|++++|+|+. .........++++|+++.+|.......... .........+...... ...+.++++++.+
T Consensus 206 ~~~~d~vi~~~~~~~~~~~~~~~~l~~~g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 285 (319)
T cd08267 206 GEKYDVIFDAVGNSPFSLYRASLALKPGGRYVSVGGGPSGLLLVLLLLPLTLGGGGRRLKFFLAKPNAEDLEQLAELVEE 285 (319)
T ss_pred CCCCcEEEECCCchHHHHHHhhhccCCCCEEEEeccccccccccccccchhhccccceEEEEEecCCHHHHHHHHHHHHC
Confidence 45899999999853 223444445999999999997543222111 1111222222222222 5678889999999
Q ss_pred CCCCCCCceeeeeeCCCC
Q 040104 87 GKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 87 g~i~~~~~i~~~~~l~~~ 104 (105)
+++ +++++++|+++++
T Consensus 286 ~~~--~~~~~~~~~~~~i 301 (319)
T cd08267 286 GKL--KPVIDSVYPLEDA 301 (319)
T ss_pred CCe--eeeeeeEEcHHHH
Confidence 988 4557778887754
No 129
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=97.94 E-value=6e-06 Score=54.70 Aligned_cols=87 Identities=20% Similarity=0.200 Sum_probs=57.2
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC--Cc--cc---------cchhhhh----cCeEEEEe-ecc-CC
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH--EM--TV---------PLTPAAA----REVDVVGV-FRY-KN 75 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~--~~---------~~~~~~~----~~~~i~~~-~~~-~~ 75 (105)
+++|+++|++|+.. ...++++++++|+++.+|.... .. .+ .+..... +...+... ... ..
T Consensus 226 ~~vd~vi~~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (350)
T cd08248 226 GKFDVILDTVGGDT-EKWALKLLKKGGTYVTLVSPLLKNTDKLGLVGGMLKSAVDLLKKNVKSLLKGSHYRWGFFSPSGS 304 (350)
T ss_pred CCCCEEEECCChHH-HHHHHHHhccCCEEEEecCCcccccccccccchhhhhHHHHHHHHHHHHhcCCCeeEEEECCCHH
Confidence 57999999999885 9999999999999999985421 10 11 0000100 11111111 112 45
Q ss_pred CHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104 76 TWPLCLEFLRSGKIDIKPLVTHRFGFSQK 104 (105)
Q Consensus 76 ~~~~~~~~v~~g~i~~~~~i~~~~~l~~~ 104 (105)
.+.++++++.+|.+ ++.++++|+++++
T Consensus 305 ~~~~~~~~~~~g~~--~~~~~~~~~~~~~ 331 (350)
T cd08248 305 ALDELAKLVEDGKI--KPVIDKVFPFEEV 331 (350)
T ss_pred HHHHHHHHHhCCCE--ecccceeecHHHH
Confidence 78999999999988 4557778888764
No 130
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=97.78 E-value=3.2e-05 Score=58.73 Aligned_cols=99 Identities=15% Similarity=0.245 Sum_probs=69.9
Q ss_pred HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC--CCccccchhhhhcCeEEEEeecc------C
Q 040104 4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH--HEMTVPLTPAAAREVDVVGVFRY------K 74 (105)
Q Consensus 4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~--~~~~~~~~~~~~~~~~i~~~~~~------~ 74 (105)
++..-+...| |+|+|+|++....+. +..+++||+.+||+..+|-.. ...++- +..+.+|.+++|.... .
T Consensus 1612 sFEq~vl~~T~GrGVdlVLNSLaeEk-LQASiRCLa~~GRFLEIGKfDLSqNspLG-MavfLkNvsfHGiLLDsvmege~ 1689 (2376)
T KOG1202|consen 1612 SFEQHVLWHTKGRGVDLVLNSLAEEK-LQASIRCLALHGRFLEIGKFDLSQNSPLG-MAVFLKNVSFHGILLDSVMEGEE 1689 (2376)
T ss_pred cHHHHHHHHhcCCCeeeehhhhhHHH-HHHHHHHHHhcCeeeeecceecccCCcch-hhhhhcccceeeeehhhhhcCcH
Confidence 3445566677 789999999999887 999999999999999998533 112222 2346789999988743 4
Q ss_pred CCHHHHHHHHHcCCCC--CCCceeeeeeCCCC
Q 040104 75 NTWPLCLEFLRSGKID--IKPLVTHRFGFSQK 104 (105)
Q Consensus 75 ~~~~~~~~~v~~g~i~--~~~~i~~~~~l~~~ 104 (105)
+++.++..++++|.-. ++|+-+++|+=.++
T Consensus 1690 e~~~ev~~Lv~eGIksGvV~PL~ttvF~~~qv 1721 (2376)
T KOG1202|consen 1690 EMWREVAALVAEGIKSGVVRPLPTTVFHGQQV 1721 (2376)
T ss_pred HHHHHHHHHHHhhhccCceeccccccccHHHH
Confidence 5678888888776221 25566667765443
No 131
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=96.93 E-value=0.0021 Score=41.59 Aligned_cols=35 Identities=14% Similarity=0.333 Sum_probs=27.1
Q ss_pred CCCcEEEEc-c-----CChHHHHHHHHhhhcCCEEEEEcCC
Q 040104 15 TGIDVSFDC-A-----GFNKTMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 15 ~g~d~vid~-~-----g~~~~~~~~~~~l~~~G~~v~~g~~ 49 (105)
+++|+|+.. + .....+.+++++|++||++++.+..
T Consensus 145 ~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 145 NSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred CceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEee
Confidence 478988853 2 2345699999999999999998753
No 132
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=94.50 E-value=0.095 Score=36.51 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=31.2
Q ss_pred CCcEEEEccCChHHHH-HHHHhhhcCCEEEEEcCCCC
Q 040104 16 GIDVSFDCAGFNKTMS-TALSATRAGGKVCLVGMGHH 51 (105)
Q Consensus 16 g~d~vid~~g~~~~~~-~~~~~l~~~G~~v~~g~~~~ 51 (105)
++|++|+++|....+. ..+..+++++.++.+|....
T Consensus 267 ~aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG~~d~ 303 (425)
T PRK05476 267 LGDIFVTATGNKDVITAEHMEAMKDGAILANIGHFDN 303 (425)
T ss_pred CCCEEEECCCCHHHHHHHHHhcCCCCCEEEEcCCCCC
Confidence 6899999999988676 68899999999999997653
No 133
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=94.45 E-value=0.082 Score=31.52 Aligned_cols=37 Identities=24% Similarity=0.436 Sum_probs=29.7
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH 51 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~ 51 (105)
-|+|+|+||+|.-...+.+...++.|.+-|+++.+..
T Consensus 86 ~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~ 122 (149)
T smart00846 86 LGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAK 122 (149)
T ss_pred cCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCC
Confidence 3899999999986656777788888888888887653
No 134
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=94.17 E-value=0.077 Score=31.76 Aligned_cols=36 Identities=25% Similarity=0.459 Sum_probs=30.7
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH 51 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~ 51 (105)
|+|+|+||+|.-...+.+...++.|.+-|+++.+..
T Consensus 88 gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~ 123 (151)
T PF00044_consen 88 GVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSK 123 (151)
T ss_dssp TESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-S
T ss_pred cccEEEeccccceecccccccccccccceeeccccc
Confidence 899999999997778888899999988888887654
No 135
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=94.02 E-value=0.36 Score=29.56 Aligned_cols=43 Identities=19% Similarity=0.365 Sum_probs=29.9
Q ss_pred HHHHHHHc-CCCCcEEEE-cc----CC------------hHHHHHHHHhhhcCCEEEEEcC
Q 040104 6 VEKIDKAM-GTGIDVSFD-CA----GF------------NKTMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 6 ~~~~~~~~-~~g~d~vid-~~----g~------------~~~~~~~~~~l~~~G~~v~~g~ 48 (105)
.+.+++.. ++++|+|+. .. |. ...+..+.++|+++|+++....
T Consensus 87 ~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 87 LNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred HHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 34455555 458999995 32 22 2457889999999999998653
No 136
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=93.72 E-value=0.13 Score=34.57 Aligned_cols=36 Identities=28% Similarity=0.442 Sum_probs=32.0
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
.++|+||+|+|.....+.+...++.|+..+.++.+.
T Consensus 88 ~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~ 123 (325)
T TIGR01532 88 LGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPG 123 (325)
T ss_pred cCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCC
Confidence 489999999999888888999999999999998663
No 137
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=92.63 E-value=0.34 Score=34.61 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=38.4
Q ss_pred CCCcEEEEcc---CChH---HHHHHHHhhhcCCEEEEEcCCC-CCcccc-chhhhh--cCeEEEEee
Q 040104 15 TGIDVSFDCA---GFNK---TMSTALSATRAGGKVCLVGMGH-HEMTVP-LTPAAA--REVDVVGVF 71 (105)
Q Consensus 15 ~g~d~vid~~---g~~~---~~~~~~~~l~~~G~~v~~g~~~-~~~~~~-~~~~~~--~~~~i~~~~ 71 (105)
.++|++|+|+ |.+. ..++.++.+++|+.++.++... +..+.. ..+.+. .++++.+..
T Consensus 246 ~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~GGn~E~t~p~~~~~~~~GV~~~gv~ 312 (511)
T TIGR00561 246 KEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQGGNCEYTKPGEVYTTENQVKVIGYT 312 (511)
T ss_pred CCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCCCCCEEEecCceEEEecCCEEEEeeC
Confidence 5799999999 6544 5778999999999999998744 333222 112221 347776654
No 138
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=92.03 E-value=0.37 Score=33.48 Aligned_cols=35 Identities=14% Similarity=0.159 Sum_probs=30.6
Q ss_pred CCcEEEEccCChHHHHH-HHHhhhcCCEEEEEcCCC
Q 040104 16 GIDVSFDCAGFNKTMST-ALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~-~~~~l~~~G~~v~~g~~~ 50 (105)
+.|++|+++|+...++. .+..+++++.++.+|...
T Consensus 250 ~aDVVItaTG~~~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 250 IGDIFITATGNKDVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred cCCEEEECCCCHHHHHHHHHhcCCCCcEEEEECCCC
Confidence 57999999999887775 899999999999998653
No 139
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=92.02 E-value=0.48 Score=32.11 Aligned_cols=37 Identities=16% Similarity=0.290 Sum_probs=31.4
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH 51 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~ 51 (105)
.|+|+||+|+|....-+.+-..+..|...+.+..+..
T Consensus 94 ~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~ 130 (338)
T PLN02358 94 AGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK 130 (338)
T ss_pred cCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCC
Confidence 4899999999998878888899999988888876543
No 140
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=90.83 E-value=0.37 Score=32.90 Aligned_cols=69 Identities=16% Similarity=0.173 Sum_probs=45.4
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCc--cc--cchhhhhcC--eEEEEeecc-CCCHHHHHHHH
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEM--TV--PLTPAAARE--VDVVGVFRY-KNTWPLCLEFL 84 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~--~~--~~~~~~~~~--~~i~~~~~~-~~~~~~~~~~v 84 (105)
|+|+|+||+|.-...+.+...|+.|.+-|++..|.... .+ -.+.-.+.. .++...-.+ .+.+.-++..+
T Consensus 104 gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d~~~t~V~GVN~~~y~~~~~~IiSnASCTTNcLAP~~kvL 179 (361)
T PTZ00434 104 GVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASGGAKTIVMGVNQHEYSPTEHHVVSNASCTTNCLAPIVHVL 179 (361)
T ss_pred CCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCCCCceEEEcCChHHcCcccCcEEECCChHHHhhHHHHHHh
Confidence 89999999998777888999999998888887664321 11 112112222 345544333 67777777777
No 141
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=90.75 E-value=1.9 Score=24.89 Aligned_cols=49 Identities=24% Similarity=0.220 Sum_probs=35.7
Q ss_pred hHHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC
Q 040104 3 AEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH 51 (105)
Q Consensus 3 ~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~ 51 (105)
.+..+.+++....+-...|..-|-+.++.--.-+.+|.|.++++|.|..
T Consensus 48 ~el~~ai~~a~~~~~~~~I~V~GEEDL~~lPail~aP~gs~V~YGQP~e 96 (121)
T PF04019_consen 48 EELIEAIKKALESGKPVVIFVDGEEDLAVLPAILYAPEGSVVLYGQPGE 96 (121)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeChHHHHHHHHHHhCCCCCEEEECCCCC
Confidence 4556777777644555666666888866667777889999999998874
No 142
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=90.59 E-value=0.66 Score=31.39 Aligned_cols=35 Identities=29% Similarity=0.293 Sum_probs=30.3
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
|+|+||+|+|....-+.+-..++.|...|.+..+.
T Consensus 89 gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~ 123 (331)
T PRK15425 89 GVDVVAEATGLFLTDETARKHITAGAKKVVMTGPS 123 (331)
T ss_pred CCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCC
Confidence 89999999999876778888999998888887664
No 143
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=89.94 E-value=0.7 Score=31.22 Aligned_cols=35 Identities=23% Similarity=0.428 Sum_probs=30.0
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
|+|+||||+|....-+.+-..++.|.+.|.+..+.
T Consensus 90 gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~ 124 (327)
T TIGR01534 90 GVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPS 124 (327)
T ss_pred CCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCC
Confidence 89999999999876777888899998888887654
No 144
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=89.88 E-value=0.78 Score=31.79 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=31.1
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
.|+|+||||+|.-..-+.+-..++.|.+.|.+..+.
T Consensus 149 ~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap~ 184 (395)
T PLN03096 149 LGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 184 (395)
T ss_pred cCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCCC
Confidence 489999999999877788889999999999887653
No 145
>PLN02494 adenosylhomocysteinase
Probab=89.73 E-value=0.56 Score=33.25 Aligned_cols=35 Identities=14% Similarity=0.257 Sum_probs=30.5
Q ss_pred CCcEEEEccCChHHH-HHHHHhhhcCCEEEEEcCCC
Q 040104 16 GIDVSFDCAGFNKTM-STALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 16 g~d~vid~~g~~~~~-~~~~~~l~~~G~~v~~g~~~ 50 (105)
..|++|+++|....+ ...+..+++++.++.+|...
T Consensus 309 ~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~~ 344 (477)
T PLN02494 309 EADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFD 344 (477)
T ss_pred hCCEEEECCCCccchHHHHHhcCCCCCEEEEcCCCC
Confidence 579999999988754 78999999999999999753
No 146
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=89.58 E-value=2.2 Score=28.35 Aligned_cols=53 Identities=13% Similarity=0.036 Sum_probs=37.3
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEE
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVG 69 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~ 69 (105)
.++|+||+|++....-...++.+++++.++.++..++...+ .....++++..+
T Consensus 209 ~~aDiVI~t~p~~~i~~~~l~~~~~g~vIIDla~~pggtd~--~~a~~~Gv~~~~ 261 (296)
T PRK08306 209 GKIDIIFNTIPALVLTKEVLSKMPPEALIIDLASKPGGTDF--EYAEKRGIKALL 261 (296)
T ss_pred CCCCEEEECCChhhhhHHHHHcCCCCcEEEEEccCCCCcCe--eehhhCCeEEEE
Confidence 36899999998765456778889999999999876554444 223334555553
No 147
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=89.44 E-value=1.3 Score=28.20 Aligned_cols=45 Identities=18% Similarity=0.436 Sum_probs=30.8
Q ss_pred HHHHHHHHHcCCCCcEEE-Ecc--CChHHHHHHHHhhhcCCEEEEEcC
Q 040104 4 EEVEKIDKAMGTGIDVSF-DCA--GFNKTMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 4 ~~~~~~~~~~~~g~d~vi-d~~--g~~~~~~~~~~~l~~~G~~v~~g~ 48 (105)
+..+.+.+...+.+|.|| |+- -.+.-++.++++|++||.++.=-+
T Consensus 120 dal~~l~~~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 120 DALDVLSRLLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred cHHHHHHhccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 344555552346899776 653 234568999999999999987543
No 148
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=89.20 E-value=1.2 Score=30.26 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=29.4
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCC
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 49 (105)
.|+|+||+|+|.....+.+-..++.|...|.+..+
T Consensus 88 ~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap 122 (343)
T PRK07729 88 LGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAP 122 (343)
T ss_pred cCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCC
Confidence 38999999999987777788888888888888754
No 149
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=89.17 E-value=1 Score=30.59 Aligned_cols=35 Identities=29% Similarity=0.457 Sum_probs=29.7
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCC
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 49 (105)
.|+|+||+|+|....-+.+-..+..|...+.+..+
T Consensus 90 ~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap 124 (336)
T PRK13535 90 LGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHP 124 (336)
T ss_pred cCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCC
Confidence 48999999999987677788888888888888765
No 150
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=89.06 E-value=0.9 Score=30.79 Aligned_cols=34 Identities=26% Similarity=0.267 Sum_probs=29.7
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 49 (105)
|+|+||+|+|.....+.+-..+..|.+.|.+..+
T Consensus 88 gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap 121 (334)
T PRK08955 88 GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAP 121 (334)
T ss_pred CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCC
Confidence 8999999999987778888899988888888765
No 151
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=88.78 E-value=0.99 Score=30.65 Aligned_cols=34 Identities=29% Similarity=0.364 Sum_probs=29.1
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 49 (105)
|+|+||+|+|.....+.+-..++.|...|.+..+
T Consensus 90 gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap 123 (337)
T PRK07403 90 GIDLIIESTGVFVTKEGASKHIQAGAKKVLITAP 123 (337)
T ss_pred CCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCC
Confidence 8999999999987677788888888888888765
No 152
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=88.67 E-value=1 Score=30.61 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=30.1
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
.|+|+||+|+|....-+.+-..++.|.+.|.+..+.
T Consensus 89 ~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~ 124 (337)
T PTZ00023 89 NGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPP 124 (337)
T ss_pred cCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCC
Confidence 489999999998776777888888888888887653
No 153
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=87.88 E-value=1.8 Score=24.32 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=20.3
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEE
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLV 46 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 46 (105)
..|++|||++.....+-+...|+.|=.++..
T Consensus 59 ~~dvvVE~t~~~~~~~~~~~~L~~G~~VVt~ 89 (117)
T PF03447_consen 59 DIDVVVECTSSEAVAEYYEKALERGKHVVTA 89 (117)
T ss_dssp T-SEEEE-SSCHHHHHHHHHHHHTTCEEEES
T ss_pred CCCEEEECCCchHHHHHHHHHHHCCCeEEEE
Confidence 6999999988777555567777766555554
No 154
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=87.63 E-value=1.9 Score=30.35 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=30.8
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
.|+|+||||+|.....+.+-..+..|.+.|.+..+.
T Consensus 164 ~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP~ 199 (442)
T PLN02237 164 LGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 199 (442)
T ss_pred cCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCCC
Confidence 489999999999877888889999998888887543
No 155
>PRK00536 speE spermidine synthase; Provisional
Probab=87.36 E-value=1.7 Score=28.49 Aligned_cols=35 Identities=9% Similarity=-0.108 Sum_probs=27.7
Q ss_pred CCCCcEEE-EccCChHHHHHHHHhhhcCCEEEEEcC
Q 040104 14 GTGIDVSF-DCAGFNKTMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 14 ~~g~d~vi-d~~g~~~~~~~~~~~l~~~G~~v~~g~ 48 (105)
.+.+|+|| |+.-.++-+..+.++|+++|.++.-+.
T Consensus 137 ~~~fDVIIvDs~~~~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 137 IKKYDLIICLQEPDIHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred CCcCCEEEEcCCCChHHHHHHHHhcCCCcEEEECCC
Confidence 35799766 767666657789999999999998754
No 156
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=87.05 E-value=3.1 Score=28.24 Aligned_cols=72 Identities=18% Similarity=0.215 Sum_probs=45.4
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcC-CEEEEEcCCCCC--cc--ccchhhhhc-CeEEEEeecc-CCCHHHHHHHHHc
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHHE--MT--VPLTPAAAR-EVDVVGVFRY-KNTWPLCLEFLRS 86 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~--~~--~~~~~~~~~-~~~i~~~~~~-~~~~~~~~~~v~~ 86 (105)
-|+|+|+||+|.-..-+.+-..+..+ ..-|+++.+... .. +..+.-.+. +.++.....+ ...+..++..+.+
T Consensus 88 ~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~~~~vv~gvn~~~~~~~~~iVsnaSCTTNcLap~~kvl~d 166 (335)
T COG0057 88 LGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCLAPVAKVLND 166 (335)
T ss_pred cCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCCccEEEEeccccccCCCCcEEEEccchhhhhHHHHHHHHH
Confidence 47999999999876667777788885 777777776543 22 222222222 4555544444 6667666666654
No 157
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=86.47 E-value=1.6 Score=27.37 Aligned_cols=32 Identities=13% Similarity=0.125 Sum_probs=24.6
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEE
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLV 46 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 46 (105)
..+|+|+-....+......++.|++||+++..
T Consensus 144 ~~fD~I~~~~~~~~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 144 APYDRIYVTAAGPDIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred CCcCEEEECCCcccchHHHHHhhCCCcEEEEE
Confidence 36898876555555567889999999998875
No 158
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=86.26 E-value=2.2 Score=26.32 Aligned_cols=32 Identities=19% Similarity=0.348 Sum_probs=24.5
Q ss_pred CCCcEEEEccCC---hHHHHHHHHhhhcCCEEEEE
Q 040104 15 TGIDVSFDCAGF---NKTMSTALSATRAGGKVCLV 46 (105)
Q Consensus 15 ~g~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~ 46 (105)
..+|.||...+. ...+..+.++|+++|+++..
T Consensus 110 ~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 110 EKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred CCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEE
Confidence 479999985543 33577888999999999864
No 159
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=85.46 E-value=1.7 Score=24.93 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=23.9
Q ss_pred CcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104 17 IDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 17 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
+|++||++ .+......++.+...|.-+++|...
T Consensus 68 ~DVvIDfT-~p~~~~~~~~~~~~~g~~~ViGTTG 100 (124)
T PF01113_consen 68 ADVVIDFT-NPDAVYDNLEYALKHGVPLVIGTTG 100 (124)
T ss_dssp -SEEEEES--HHHHHHHHHHHHHHT-EEEEE-SS
T ss_pred CCEEEEcC-ChHHhHHHHHHHHhCCCCEEEECCC
Confidence 89999999 5666778888888889888888654
No 160
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=85.26 E-value=2 Score=29.01 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=26.3
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEE
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLV 46 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 46 (105)
..+|+|+.+.|........++.|+++|++++.
T Consensus 148 ~~fD~Ii~~~g~~~ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 148 APYDVIFVTVGVDEVPETWFTQLKEGGRVIVP 179 (322)
T ss_pred CCccEEEECCchHHhHHHHHHhcCCCCEEEEE
Confidence 35899999888776566789999999998874
No 161
>PRK01160 hypothetical protein; Provisional
Probab=84.21 E-value=7 Score=24.20 Aligned_cols=49 Identities=18% Similarity=0.168 Sum_probs=32.8
Q ss_pred hHHHHHHHHH---cCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC
Q 040104 3 AEEVEKIDKA---MGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH 51 (105)
Q Consensus 3 ~~~~~~~~~~---~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~ 51 (105)
.+..+.+++. ...+-.+.|..-|-+.+..--.-..+|.|.++.+|.|..
T Consensus 98 ~el~~ai~~a~~~~~~~~~~~I~VdGEEDLa~lP~il~aP~gs~VlYGQP~e 149 (178)
T PRK01160 98 LALLRAIKKAFSLIERGKKVRIEVNGEEDLAVIPAVLYAPLGTVVAYGQPDE 149 (178)
T ss_pred HHHHHHHHHHHHhhhcCCeEEEEEcChHHHHHHHHHHhcCCCCEEEeCCCCC
Confidence 3556677766 333445566656877755555666679999999998764
No 162
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=84.13 E-value=2.2 Score=26.58 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=24.4
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEE
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLV 46 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 46 (105)
..+|+|+-+.......+..++.|++||+++..
T Consensus 141 ~~fD~Ii~~~~~~~~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 141 APFDAIIVTAAASTIPSALVRQLKDGGVLVIP 172 (205)
T ss_pred CCccEEEEccCcchhhHHHHHhcCcCcEEEEE
Confidence 36898886655555467788999999999764
No 163
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=84.09 E-value=2.2 Score=29.93 Aligned_cols=35 Identities=17% Similarity=0.310 Sum_probs=27.4
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
|+|+||+|+|.....+.+...++.|..-+++..+.
T Consensus 174 gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~ 208 (421)
T PLN02272 174 GAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPS 208 (421)
T ss_pred CCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCC
Confidence 89999999999766778888888887555555553
No 164
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=83.81 E-value=3.2 Score=22.96 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=24.5
Q ss_pred CCCcEEEEccCC---hHHHHHHHHhhhcCCEEEEEc
Q 040104 15 TGIDVSFDCAGF---NKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 15 ~g~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g 47 (105)
..+|+|+-..+. ...+..+.+.|+++|+++.-.
T Consensus 87 ~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 87 PEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence 468988865432 235888999999999988753
No 165
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=83.15 E-value=3.5 Score=26.03 Aligned_cols=67 Identities=9% Similarity=-0.008 Sum_probs=39.8
Q ss_pred HHHHHHHhhhcCCEEEEEcCCCCCccc--cchhhhhcCeEEEEeeccCCCHHHHHHHHHcCCCCCCCce
Q 040104 29 TMSTALSATRAGGKVCLVGMGHHEMTV--PLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLV 95 (105)
Q Consensus 29 ~~~~~~~~l~~~G~~v~~g~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~g~i~~~~~i 95 (105)
.|..+-++|+++|.+++||-..-.-.+ +.+.-.-..++-+....+-.+++++.++..+..+.+...+
T Consensus 123 lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l~~~~ 191 (204)
T PF06080_consen 123 LFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLELEEDI 191 (204)
T ss_pred HHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCccCccc
Confidence 578888999999999999965422222 2221111111111111225788889888888877655433
No 166
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=83.03 E-value=2.1 Score=29.19 Aligned_cols=32 Identities=25% Similarity=0.481 Sum_probs=24.9
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEc
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g 47 (105)
|+|+||||+|.-.....+...++.|..=|++.
T Consensus 92 gvDiVie~TG~f~~~~~a~~hl~~Gakkviis 123 (342)
T PTZ00353 92 GVQYVVECTGLYSTRSRCWGHVTGGAKGVFVA 123 (342)
T ss_pred CCCEEEEcccccccHhhhhhhhhcCCCcEEEe
Confidence 89999999999866788888888764444443
No 167
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=82.04 E-value=5.8 Score=27.64 Aligned_cols=48 Identities=21% Similarity=0.274 Sum_probs=33.4
Q ss_pred hHHHHHHHHHc--CCCCcEEE-EccCCh--------------HHHHHHHHhhhcCCEEEEEcCCC
Q 040104 3 AEEVEKIDKAM--GTGIDVSF-DCAGFN--------------KTMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 3 ~~~~~~~~~~~--~~g~d~vi-d~~g~~--------------~~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
+|+.+.+++.- |..+|+|| |...-. ..+..++++|+|+|+++...++.
T Consensus 275 ~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 275 GDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred hhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 45666777665 45899766 542211 14678999999999999987654
No 168
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=81.92 E-value=7.3 Score=24.45 Aligned_cols=40 Identities=10% Similarity=0.189 Sum_probs=27.5
Q ss_pred HHHHHHc-CCCCcEEEEcc-----CCh------------HHHHHHHHhhhcCCEEEEE
Q 040104 7 EKIDKAM-GTGIDVSFDCA-----GFN------------KTMSTALSATRAGGKVCLV 46 (105)
Q Consensus 7 ~~~~~~~-~~g~d~vid~~-----g~~------------~~~~~~~~~l~~~G~~v~~ 46 (105)
+++.+.. .+.+|+|+-.. |.+ ..+..+.++|++||.+++.
T Consensus 107 ~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 107 KALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred HHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 4444444 45899988532 322 2478899999999999985
No 169
>PRK14967 putative methyltransferase; Provisional
Probab=81.55 E-value=8.1 Score=24.32 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=14.9
Q ss_pred HHHHHHhhhcCCEEEEEc
Q 040104 30 MSTALSATRAGGKVCLVG 47 (105)
Q Consensus 30 ~~~~~~~l~~~G~~v~~g 47 (105)
+..+.++|+++|+++.+-
T Consensus 142 l~~a~~~Lk~gG~l~~~~ 159 (223)
T PRK14967 142 CDAAPALLAPGGSLLLVQ 159 (223)
T ss_pred HHHHHHhcCCCcEEEEEE
Confidence 456889999999999763
No 170
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=81.52 E-value=1.6 Score=31.07 Aligned_cols=35 Identities=11% Similarity=0.156 Sum_probs=30.7
Q ss_pred CCcEEEEccCChHHHH-HHHHhhhcCCEEEEEcCCC
Q 040104 16 GIDVSFDCAGFNKTMS-TALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 16 g~d~vid~~g~~~~~~-~~~~~l~~~G~~v~~g~~~ 50 (105)
..|+++.++|....+. ..+..+++++.++.+|...
T Consensus 309 ~ADIVI~atGt~~iI~~e~~~~MKpGAiLINvGr~d 344 (476)
T PTZ00075 309 TADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHFD 344 (476)
T ss_pred cCCEEEECCCcccccCHHHHhccCCCcEEEEcCCCc
Confidence 6899999999877665 8999999999999998754
No 171
>PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C ....
Probab=81.47 E-value=4 Score=20.60 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=24.5
Q ss_pred HHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCC
Q 040104 6 VEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGG 41 (105)
Q Consensus 6 ~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G 41 (105)
++++++..|..+++.+|+-++-. ...+.++++.--
T Consensus 2 i~avr~~~g~~~~l~vDan~~~~-~~~a~~~~~~l~ 36 (67)
T PF01188_consen 2 IRAVREAVGPDIDLMVDANQAWT-LEEAIRLARALE 36 (67)
T ss_dssp HHHHHHHHSTTSEEEEE-TTBBS-HHHHHHHHHHHG
T ss_pred HHHHHHhhCCCCeEEEECCCCCC-HHHHHHHHHHcC
Confidence 46778887778999999988865 666666555443
No 172
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=81.22 E-value=3.1 Score=26.04 Aligned_cols=31 Identities=16% Similarity=0.166 Sum_probs=23.5
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEE
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLV 46 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 46 (105)
.+|+|+-....+.......+.|++||+++..
T Consensus 146 ~fD~Ii~~~~~~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAAGPKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred CCCEEEEcCCcccccHHHHHhcCcCcEEEEE
Confidence 6898875544455566788999999998865
No 173
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=81.15 E-value=1.8 Score=27.66 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=26.7
Q ss_pred HcCCCCcEEEEccC-----C-hHHHHHHHHhhhcCCEEEEEc
Q 040104 12 AMGTGIDVSFDCAG-----F-NKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 12 ~~~~g~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g 47 (105)
+.+..+|.|+.+.+ + ...+++.-++|+|+|++..+-
T Consensus 141 l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 141 LADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred cccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 34457898887532 2 235889999999999999984
No 174
>COG1909 Uncharacterized protein conserved in archaea [Function unknown]
Probab=81.07 E-value=9.8 Score=23.25 Aligned_cols=49 Identities=22% Similarity=0.198 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC
Q 040104 4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE 52 (105)
Q Consensus 4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~ 52 (105)
++.+.+++.+.++=-..|..-|-+.+.....-.++|.|+++.+|.|...
T Consensus 94 el~~ai~~a~~~~k~~~I~V~GEEDLa~lp~i~~ap~~tvV~YGqP~~G 142 (167)
T COG1909 94 ELIKAIEKALEDGKRVRIFVDGEEDLAVLPAILYAPLGTVVLYGQPDEG 142 (167)
T ss_pred HHHHHHHHHHhcCCcEEEEEeChhHHHHhHHHhhcCCCCEEEeCCCCCc
Confidence 4566777777333334455558887666677778899999999987643
No 175
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=80.58 E-value=3.8 Score=26.81 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=27.4
Q ss_pred CCCcEEE-EccCChHHHHHHHHhhhcCCEEEEEcC
Q 040104 15 TGIDVSF-DCAGFNKTMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 15 ~g~d~vi-d~~g~~~~~~~~~~~l~~~G~~v~~g~ 48 (105)
+.+|++| |..--...++.+.++|++||+++.+-.
T Consensus 162 ~~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 162 EDVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred cccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEcC
Confidence 4688665 666656789999999999999999953
No 176
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=80.34 E-value=2 Score=27.19 Aligned_cols=31 Identities=16% Similarity=0.206 Sum_probs=26.5
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEE
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLV 46 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 46 (105)
.+|.|+-+.+.+..-...++-|++||+++..
T Consensus 138 PyD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~P 168 (209)
T COG2518 138 PYDRIIVTAAAPEVPEALLDQLKPGGRLVIP 168 (209)
T ss_pred CcCEEEEeeccCCCCHHHHHhcccCCEEEEE
Confidence 5899998888887557889999999999876
No 177
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=79.56 E-value=4.8 Score=25.07 Aligned_cols=33 Identities=15% Similarity=0.089 Sum_probs=24.4
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEc
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g 47 (105)
+.+|+|+-............+.|++||+++..-
T Consensus 143 ~~fD~I~~~~~~~~~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 143 APFDRILVTAAAPEIPRALLEQLKEGGILVAPV 175 (212)
T ss_pred CCcCEEEEccCchhhhHHHHHhcCCCcEEEEEE
Confidence 358888765555555677889999999988653
No 178
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=79.45 E-value=7 Score=25.15 Aligned_cols=35 Identities=20% Similarity=0.201 Sum_probs=25.9
Q ss_pred CCcEEEEccCCh---HHHHHHHHhhhcCCEEEEEcCCC
Q 040104 16 GIDVSFDCAGFN---KTMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 16 g~d~vid~~g~~---~~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
.+|+|+-..... ..+..+.++|+++|+++..|...
T Consensus 179 ~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~~ 216 (250)
T PRK00517 179 KADVIVANILANPLLELAPDLARLLKPGGRLILSGILE 216 (250)
T ss_pred CcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECcH
Confidence 488888655433 24667889999999999987643
No 179
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=79.27 E-value=13 Score=23.17 Aligned_cols=42 Identities=14% Similarity=0.157 Sum_probs=31.7
Q ss_pred HHHHHHcCCCCcEEEEccCChH--------HHHHHHHhhhcCCEEEEEcC
Q 040104 7 EKIDKAMGTGIDVSFDCAGFNK--------TMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 7 ~~~~~~~~~g~d~vid~~g~~~--------~~~~~~~~l~~~G~~v~~g~ 48 (105)
..+.+..+.-+|.||.++.--. .++..+..++.||.++.+-.
T Consensus 108 ~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftY 157 (194)
T COG3963 108 TTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTY 157 (194)
T ss_pred HHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 3455555667999999876532 47889999999999998854
No 180
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=78.99 E-value=5 Score=26.47 Aligned_cols=35 Identities=17% Similarity=0.098 Sum_probs=25.7
Q ss_pred CCCcEEEEccCCh---HHHHHHHHhhhcCCEEEEEcCC
Q 040104 15 TGIDVSFDCAGFN---KTMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 15 ~g~d~vid~~g~~---~~~~~~~~~l~~~G~~v~~g~~ 49 (105)
+++|+|+...... ..+....++|+++|.++..|..
T Consensus 224 ~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 224 GKADVIVANILAEVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred CCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 4788888654332 3466788999999999988753
No 181
>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain). Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.
Probab=78.86 E-value=4.4 Score=21.18 Aligned_cols=27 Identities=7% Similarity=0.181 Sum_probs=22.6
Q ss_pred EEEEccCChHHHHHHHHhhhcCCEEEE
Q 040104 19 VSFDCAGFNKTMSTALSATRAGGKVCL 45 (105)
Q Consensus 19 ~vid~~g~~~~~~~~~~~l~~~G~~v~ 45 (105)
++++++|.+.-++..++++++.|.+=.
T Consensus 38 ~iie~tG~~~kid~fi~~l~~~gi~Ei 64 (75)
T PF10369_consen 38 IIIELTGTPEKIDAFIKLLKPFGILEI 64 (75)
T ss_dssp EEEEEEE-HHHHHHHHHHSTGGGEEEE
T ss_pred EEEEEcCCHHHHHHHHHHhhhcCCEEE
Confidence 588999999999999999999886544
No 182
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=78.79 E-value=6.8 Score=26.02 Aligned_cols=43 Identities=16% Similarity=0.150 Sum_probs=29.5
Q ss_pred HHHHHHHHHcCCCCcEEE-EccCC---------hHHHHHHHHhhhcCCEEEEEc
Q 040104 4 EEVEKIDKAMGTGIDVSF-DCAGF---------NKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 4 ~~~~~~~~~~~~g~d~vi-d~~g~---------~~~~~~~~~~l~~~G~~v~~g 47 (105)
|..+.+++.. ..+|+|| |++.. ..-++.+.++|+++|.++.-+
T Consensus 138 Dg~~~v~~~~-~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 138 DGVEFLRDCE-EKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred cHHHHHHhCC-CcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 4445555443 3799876 55433 234778999999999999883
No 183
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=78.31 E-value=2.8 Score=26.88 Aligned_cols=36 Identities=11% Similarity=0.357 Sum_probs=25.3
Q ss_pred CCCcEEEEccCC------hHHHHHHHHhhhcCCEEEEEcCCC
Q 040104 15 TGIDVSFDCAGF------NKTMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 15 ~g~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
+.+|+|+-+-|- ...+.+..++|+|||+++++-...
T Consensus 115 ~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~ 156 (233)
T PF01209_consen 115 NSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSK 156 (233)
T ss_dssp T-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred CceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccC
Confidence 457777754433 236889999999999999886543
No 184
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=78.30 E-value=1.8 Score=27.34 Aligned_cols=31 Identities=16% Similarity=0.198 Sum_probs=25.2
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEE
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLV 46 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 46 (105)
.+|.|+-+.+.+..-...++.|++||+++..
T Consensus 141 pfD~I~v~~a~~~ip~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 141 PFDRIIVTAAVPEIPEALLEQLKPGGRLVAP 171 (209)
T ss_dssp SEEEEEESSBBSS--HHHHHTEEEEEEEEEE
T ss_pred CcCEEEEeeccchHHHHHHHhcCCCcEEEEE
Confidence 5899998888777567899999999999984
No 185
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=78.11 E-value=4.1 Score=26.13 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=27.4
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEE
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLV 46 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 46 (105)
.+|.|..-++.+...+..++.|+++|++++.
T Consensus 162 ~YDaIhvGAaa~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 162 PYDAIHVGAAASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CcceEEEccCccccHHHHHHhhccCCeEEEe
Confidence 6899988888888889999999999999876
No 186
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=77.20 E-value=3.4 Score=22.52 Aligned_cols=32 Identities=9% Similarity=0.199 Sum_probs=23.7
Q ss_pred CCCcEEEEcc-CC---hH------HHHHHHHhhhcCCEEEEE
Q 040104 15 TGIDVSFDCA-GF---NK------TMSTALSATRAGGKVCLV 46 (105)
Q Consensus 15 ~g~d~vid~~-g~---~~------~~~~~~~~l~~~G~~v~~ 46 (105)
.++|+|+... .. .. .++...+.|+|||++++-
T Consensus 69 ~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 69 EPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp SCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 4699988866 21 11 378899999999999864
No 187
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=76.90 E-value=3.6 Score=26.74 Aligned_cols=34 Identities=24% Similarity=0.445 Sum_probs=26.2
Q ss_pred CCCcEEE-EccCChHHHHHHHHhh-hcCCEEEEEcC
Q 040104 15 TGIDVSF-DCAGFNKTMSTALSAT-RAGGKVCLVGM 48 (105)
Q Consensus 15 ~g~d~vi-d~~g~~~~~~~~~~~l-~~~G~~v~~g~ 48 (105)
..+|.|| |...-..++..+.++| ++||+++.+..
T Consensus 112 ~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fsP 147 (247)
T PF08704_consen 112 SDFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFSP 147 (247)
T ss_dssp TSEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred CcccEEEEeCCCHHHHHHHHHHHHhcCCceEEEECC
Confidence 3578665 6555455799999999 89999999953
No 188
>PRK00811 spermidine synthase; Provisional
Probab=76.68 E-value=7.9 Score=25.52 Aligned_cols=35 Identities=11% Similarity=0.021 Sum_probs=23.9
Q ss_pred cCCCCcEEEEccCC----------hHHHHHHHHhhhcCCEEEEEc
Q 040104 13 MGTGIDVSFDCAGF----------NKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 13 ~~~g~d~vid~~g~----------~~~~~~~~~~l~~~G~~v~~g 47 (105)
.++.+|+||--... .+-+..+.+.|+++|.++.-.
T Consensus 147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 147 TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 34579988743211 123567889999999998754
No 189
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=76.33 E-value=5.5 Score=25.16 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=24.5
Q ss_pred CCcEEEEccCC--------hHHHHHHHHhhhcCCEEEEEcC
Q 040104 16 GIDVSFDCAGF--------NKTMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 16 g~d~vid~~g~--------~~~~~~~~~~l~~~G~~v~~g~ 48 (105)
.+|.++|+.-- +..+....++|+|||++..++.
T Consensus 113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred CcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 47999996431 2247789999999999777764
No 190
>PRK11579 putative oxidoreductase; Provisional
Probab=76.32 E-value=21 Score=24.10 Aligned_cols=72 Identities=18% Similarity=0.154 Sum_probs=47.2
Q ss_pred CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccch---hh----hhcCeEEEEeecc--CCCHHHHHHHH
Q 040104 14 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLT---PA----AAREVDVVGVFRY--KNTWPLCLEFL 84 (105)
Q Consensus 14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~---~~----~~~~~~i~~~~~~--~~~~~~~~~~v 84 (105)
...+|+|+-|++.....+.+..+++.| .-|.+ ..|...+.. .+ -.+++.+.-.+.. ...+.++-+++
T Consensus 62 ~~~vD~V~I~tp~~~H~~~~~~al~aG-khVl~---EKPla~t~~ea~~l~~~a~~~g~~l~v~~~~R~~p~~~~~k~~i 137 (346)
T PRK11579 62 DPNIDLIVIPTPNDTHFPLAKAALEAG-KHVVV---DKPFTVTLSQARELDALAKSAGRVLSVFHNRRWDSDFLTLKALL 137 (346)
T ss_pred CCCCCEEEEcCCcHHHHHHHHHHHHCC-CeEEE---eCCCCCCHHHHHHHHHHHHHhCCEEEEEeeccCCHHHHHHHHHH
Confidence 357999999999988888888888765 55555 223333332 22 1234444333322 67889999999
Q ss_pred HcCCC
Q 040104 85 RSGKI 89 (105)
Q Consensus 85 ~~g~i 89 (105)
.+|.|
T Consensus 138 ~~g~i 142 (346)
T PRK11579 138 AEGVL 142 (346)
T ss_pred hcCCC
Confidence 99877
No 191
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=76.09 E-value=7.2 Score=24.56 Aligned_cols=34 Identities=26% Similarity=0.354 Sum_probs=24.0
Q ss_pred CCCcEEE-EccCCh--HHHHHHHHhhhcCCEEEEEcC
Q 040104 15 TGIDVSF-DCAGFN--KTMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 15 ~g~d~vi-d~~g~~--~~~~~~~~~l~~~G~~v~~g~ 48 (105)
+.+|.|| |+.=.. .-++.++.+|++||.++.=..
T Consensus 120 ~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 120 GQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp TSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred CceeEEEEcccccchhhHHHHHhhhccCCeEEEEccc
Confidence 3699776 654321 237788899999999987643
No 192
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=75.76 E-value=14 Score=21.92 Aligned_cols=68 Identities=19% Similarity=0.071 Sum_probs=44.7
Q ss_pred CCcEEEEc---cCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeeccCCCHHHHHHHHHcCC
Q 040104 16 GIDVSFDC---AGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGK 88 (105)
Q Consensus 16 g~d~vid~---~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~g~ 88 (105)
..|+++-+ .-+.+ ++..++..++...++.+|.+ .++.+..+...+++..+... ..+-+.+++.+.+|.
T Consensus 62 ~aD~viiTGsTlvN~T-i~~iL~~~~~~~~vil~GpS---~~~~P~~l~~~Gv~~v~g~~-v~d~~~~~~~i~~Gg 132 (147)
T PF04016_consen 62 WADVVIITGSTLVNGT-IDDILELARNAREVILYGPS---APLHPEALFDYGVTYVGGSR-VVDPEKVLRAISEGG 132 (147)
T ss_dssp G-SEEEEECHHCCTTT-HHHHHHHTTTSSEEEEESCC---GGS-GGGGCCTT-SEEEEEE-ES-HHHHHHHHCTTS
T ss_pred cCCEEEEEeeeeecCC-HHHHHHhCccCCeEEEEecC---chhhHHHHHhCCCCEEEEEE-EeCHHHHHHHHHcCC
Confidence 47888874 34444 89999999988899999843 33444445556776665544 467788888888874
No 193
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=75.65 E-value=8.1 Score=23.91 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=24.5
Q ss_pred CCCcEEEEc-cCC-hHHHHHHHHhhhcCCEEEEEc
Q 040104 15 TGIDVSFDC-AGF-NKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 15 ~g~d~vid~-~g~-~~~~~~~~~~l~~~G~~v~~g 47 (105)
+.+|+|+-. .+. +..+..+.++|++||+++.+-
T Consensus 111 ~~fDlV~~~~~~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 111 EKFDVVTSRAVASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred CCccEEEEccccCHHHHHHHHHHhcCCCeEEEEEe
Confidence 468988853 232 345778899999999999883
No 194
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=75.13 E-value=6.9 Score=21.36 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=23.9
Q ss_pred HHHcCCCCc-EEEEccCC--hHHHHHHHHhhhcCCEEEEEcC
Q 040104 10 DKAMGTGID-VSFDCAGF--NKTMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 10 ~~~~~~g~d-~vid~~g~--~~~~~~~~~~l~~~G~~v~~g~ 48 (105)
++..|.-+| +|+|+..+ +.++..+...++-||.++.+-.
T Consensus 5 ~~~LG~e~~~~i~d~~~g~~pnal~a~~gtv~gGGllill~p 46 (92)
T PF08351_consen 5 RQLLGQEFDLLIFDAFEGFDPNALAALAGTVRGGGLLILLLP 46 (92)
T ss_dssp -STTT--BSSEEEE-SS---HHHHHHHHTTB-TT-EEEEEES
T ss_pred hhhhCCccCEEEEEccCCCCHHHHHHHhcceecCeEEEEEcC
Confidence 334465566 67788655 5568888999999999999853
No 195
>PLN02366 spermidine synthase
Probab=74.55 E-value=11 Score=25.28 Aligned_cols=41 Identities=22% Similarity=0.212 Sum_probs=26.4
Q ss_pred HHHHHHcCCCCcEEEEccCC----------hHHHHHHHHhhhcCCEEEEEc
Q 040104 7 EKIDKAMGTGIDVSFDCAGF----------NKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 7 ~~~~~~~~~g~d~vid~~g~----------~~~~~~~~~~l~~~G~~v~~g 47 (105)
+.+++..++.+|+||--... ..-+..+.++|+++|.++.-+
T Consensus 156 ~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 156 EFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred HHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 33443324579987742222 123778899999999998754
No 196
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=74.28 E-value=19 Score=24.59 Aligned_cols=72 Identities=18% Similarity=0.100 Sum_probs=42.5
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC---ccccch--hhhhcCeEEEEeecc-CCCHHHHHHHHHc
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE---MTVPLT--PAAAREVDVVGVFRY-KNTWPLCLEFLRS 86 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~---~~~~~~--~~~~~~~~i~~~~~~-~~~~~~~~~~v~~ 86 (105)
.++|+|++|+|.......+-..++.+-..+++|.+... .+|.+. .-.+.+.++.....+ ...+..++..+.+
T Consensus 74 ~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~~~~~vs~aSCtTn~Lap~~~~L~~ 151 (333)
T TIGR01546 74 EKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAALGKDYVRVVSCNTTGLVRTLNAIND 151 (333)
T ss_pred hcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcCcCceEEecCchHhhHHHHHHHHHH
Confidence 46999999999877677777777777667777766543 223222 111222233333233 5666666665554
No 197
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=74.01 E-value=10 Score=24.86 Aligned_cols=43 Identities=21% Similarity=0.349 Sum_probs=28.4
Q ss_pred hHHHHHHHHHcC-CCCcEEEE-----ccCChH------------HHHHHHHhhhcCCEEEE
Q 040104 3 AEEVEKIDKAMG-TGIDVSFD-----CAGFNK------------TMSTALSATRAGGKVCL 45 (105)
Q Consensus 3 ~~~~~~~~~~~~-~g~d~vid-----~~g~~~------------~~~~~~~~l~~~G~~v~ 45 (105)
.+.++++.+..| ..+|+|+. .+|-.. +++.+..+|++||.+|.
T Consensus 101 ~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 101 ASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred HhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 455677888885 48998873 233211 35556667899999874
No 198
>PRK08324 short chain dehydrogenase; Validated
Probab=73.92 E-value=16 Score=27.24 Aligned_cols=35 Identities=23% Similarity=0.432 Sum_probs=24.4
Q ss_pred CCCcEEEEccCC-------------------------hHHHHHHHHhhhc---CCEEEEEcCC
Q 040104 15 TGIDVSFDCAGF-------------------------NKTMSTALSATRA---GGKVCLVGMG 49 (105)
Q Consensus 15 ~g~d~vid~~g~-------------------------~~~~~~~~~~l~~---~G~~v~~g~~ 49 (105)
+++|++|+++|. ...+..++..+++ +|+++.++..
T Consensus 497 g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~ 559 (681)
T PRK08324 497 GGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASK 559 (681)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCc
Confidence 479999999983 1224455666666 6899998753
No 199
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=73.74 E-value=8 Score=26.29 Aligned_cols=33 Identities=18% Similarity=0.118 Sum_probs=23.2
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEc
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g 47 (105)
.++|+||||+|.....+.+-.+++.|-.++.-|
T Consensus 77 ~~vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~~ 109 (341)
T PRK04207 77 EKADIVVDATPGGVGAKNKELYEKAGVKAIFQG 109 (341)
T ss_pred ccCCEEEECCCchhhHHHHHHHHHCCCEEEEcC
Confidence 368999999998876666666666664444444
No 200
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=73.66 E-value=9.5 Score=24.89 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=24.8
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEE
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLV 46 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 46 (105)
..+|+|+||++...+.+.+..+|+.|-.++..
T Consensus 60 ~~~DvVve~t~~~~~~e~~~~aL~aGk~Vvi~ 91 (265)
T PRK13303 60 QRPDLVVECAGHAALKEHVVPILKAGIDCAVI 91 (265)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHcCCCEEEe
Confidence 46899999999988777788888876555543
No 201
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=73.44 E-value=5 Score=22.11 Aligned_cols=33 Identities=12% Similarity=0.306 Sum_probs=21.9
Q ss_pred CCCCcEEEEccCCh--------------HHHHHHHHhhhcCCEEEEE
Q 040104 14 GTGIDVSFDCAGFN--------------KTMSTALSATRAGGKVCLV 46 (105)
Q Consensus 14 ~~g~d~vid~~g~~--------------~~~~~~~~~l~~~G~~v~~ 46 (105)
.+.+|+|+-...-. ..+..+.++|+++|+++.+
T Consensus 68 ~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 68 DGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp TT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 46788887643221 2377899999999998876
No 202
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=72.99 E-value=10 Score=23.71 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=25.4
Q ss_pred CCcEEEEccCC--hHHHHHHHHhhhcCCEEEEEcCC
Q 040104 16 GIDVSFDCAGF--NKTMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 16 g~d~vid~~g~--~~~~~~~~~~l~~~G~~v~~g~~ 49 (105)
.+|.+|---|. +..++.++..|+++|++|.-...
T Consensus 102 ~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 102 SPDAIFIGGGGNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 58888764332 34688999999999999987543
No 203
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=72.98 E-value=2.7 Score=21.92 Aligned_cols=31 Identities=16% Similarity=0.425 Sum_probs=21.0
Q ss_pred CCCcEEEEccCC------hHHHHHHHHhhhcCCEEEE
Q 040104 15 TGIDVSFDCAGF------NKTMSTALSATRAGGKVCL 45 (105)
Q Consensus 15 ~g~d~vid~~g~------~~~~~~~~~~l~~~G~~v~ 45 (105)
+.+|+|+-...- ...+.++.++|+|+|++++
T Consensus 59 ~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 59 NSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp T-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 457777653221 2357899999999999874
No 204
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=72.64 E-value=13 Score=20.36 Aligned_cols=34 Identities=21% Similarity=0.192 Sum_probs=25.4
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcC
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~ 48 (105)
.++++||-+++++..-.......+..|..+.+.-
T Consensus 59 ~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~D 92 (103)
T PF13241_consen 59 DGADLVFAATDDPELNEAIYADARARGILVNVVD 92 (103)
T ss_dssp TTESEEEE-SS-HHHHHHHHHHHHHTTSEEEETT
T ss_pred hhheEEEecCCCHHHHHHHHHHHhhCCEEEEECC
Confidence 4789999999999855566677777899998864
No 205
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=72.36 E-value=11 Score=24.47 Aligned_cols=36 Identities=14% Similarity=0.348 Sum_probs=26.8
Q ss_pred CCCcEEEEccCC------hHHHHHHHHhhhcCCEEEEEcCCC
Q 040104 15 TGIDVSFDCAGF------NKTMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 15 ~g~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
+.+|++.-+-|- +.++.++.+.|+|||+++++-...
T Consensus 118 ~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~ 159 (238)
T COG2226 118 NSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSK 159 (238)
T ss_pred CccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 467776654432 346899999999999999987644
No 206
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=72.16 E-value=5.3 Score=26.90 Aligned_cols=22 Identities=18% Similarity=0.533 Sum_probs=19.1
Q ss_pred HHHHHHHhhhcCCEEEEEcCCC
Q 040104 29 TMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 29 ~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
.+..+..+|+++|+++++..++
T Consensus 226 ~L~~a~~~L~~gGRl~VIsFHS 247 (314)
T COG0275 226 ALEAALDLLKPGGRLAVISFHS 247 (314)
T ss_pred HHHHHHHhhCCCcEEEEEEecc
Confidence 5788999999999999997654
No 207
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=72.05 E-value=5.3 Score=26.44 Aligned_cols=24 Identities=17% Similarity=0.407 Sum_probs=20.3
Q ss_pred hHHHHHHHHhhhcCCEEEEEcCCC
Q 040104 27 NKTMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 27 ~~~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
+.++.++++.|+|||++..+-.+.
T Consensus 194 ~k~l~EAYRVLKpGGrf~cLeFsk 217 (296)
T KOG1540|consen 194 QKALREAYRVLKPGGRFSCLEFSK 217 (296)
T ss_pred HHHHHHHHHhcCCCcEEEEEEccc
Confidence 457999999999999999886554
No 208
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=71.96 E-value=17 Score=23.08 Aligned_cols=43 Identities=26% Similarity=0.237 Sum_probs=27.4
Q ss_pred HHHHHHHHHc-CCCCcEEE-EccCChH----------------HHHHHHHhhhcCCEEEEE
Q 040104 4 EEVEKIDKAM-GTGIDVSF-DCAGFNK----------------TMSTALSATRAGGKVCLV 46 (105)
Q Consensus 4 ~~~~~~~~~~-~~g~d~vi-d~~g~~~----------------~~~~~~~~l~~~G~~v~~ 46 (105)
....++.+.. +..+|+|+ |...++. ++.-++..++|+|.++.=
T Consensus 123 ~~~~ki~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK 183 (232)
T KOG4589|consen 123 ETYRKIFEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK 183 (232)
T ss_pred HHHHHHHHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE
Confidence 4456677766 45899988 5544432 234456677888887754
No 209
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=71.43 E-value=17 Score=22.55 Aligned_cols=46 Identities=24% Similarity=0.369 Sum_probs=31.7
Q ss_pred HHHHHHHHHc-CCCCcEEEEccCChH--------------------------HHHHHHHhhhcCCEEEEEcCC
Q 040104 4 EEVEKIDKAM-GTGIDVSFDCAGFNK--------------------------TMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 4 ~~~~~~~~~~-~~g~d~vid~~g~~~--------------------------~~~~~~~~l~~~G~~v~~g~~ 49 (105)
.+.+++.+.. +..+|.||...|+.. .-..+-..|++||.+...|..
T Consensus 59 ~v~~~vg~sL~gekvDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~LtGAk 131 (236)
T KOG4022|consen 59 SVLEQVGSSLQGEKVDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLTGAK 131 (236)
T ss_pred HHHHHHHHhhcccccceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeecccc
Confidence 4556666665 569999999877642 112345678999999888763
No 210
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=71.26 E-value=7.9 Score=25.20 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=24.8
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEc
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g 47 (105)
+.+|+|+..-. +..+.+..+.|+++|.++.+.
T Consensus 150 ~sfD~I~~~~~-~~~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 150 QSLDAIIRIYA-PCKAEELARVVKPGGIVITVT 181 (272)
T ss_pred CceeEEEEecC-CCCHHHHHhhccCCCEEEEEe
Confidence 35888886443 444788999999999999874
No 211
>PRK04266 fibrillarin; Provisional
Probab=71.02 E-value=11 Score=24.16 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=22.7
Q ss_pred CCcEEEEccCChH----HHHHHHHhhhcCCEEEEE
Q 040104 16 GIDVSFDCAGFNK----TMSTALSATRAGGKVCLV 46 (105)
Q Consensus 16 g~d~vid~~g~~~----~~~~~~~~l~~~G~~v~~ 46 (105)
.+|+++--...+. .+..+.++|+|||++++.
T Consensus 141 ~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 141 KVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred cCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 5898884343331 367888999999999984
No 212
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=71.00 E-value=14 Score=21.85 Aligned_cols=40 Identities=13% Similarity=0.193 Sum_probs=29.4
Q ss_pred HHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEc
Q 040104 7 EKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 7 ~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g 47 (105)
+.+++..... ..||.|.|+......+.++|+..|.++.+-
T Consensus 53 ~~l~~l~~~~-~~VIa~GGG~~~~~~~~~~L~~~g~vI~L~ 92 (158)
T PF01202_consen 53 EALRELLKEN-NCVIACGGGIVLKEENRELLKENGLVIYLD 92 (158)
T ss_dssp HHHHHHHCSS-SEEEEE-TTGGGSHHHHHHHHHHSEEEEEE
T ss_pred HHHHHHhccC-cEEEeCCCCCcCcHHHHHHHHhCCEEEEEe
Confidence 3444444333 889999888776888999999999988883
No 213
>PLN02476 O-methyltransferase
Probab=70.72 E-value=21 Score=23.74 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=23.7
Q ss_pred CCCcEEE-EccCC--hHHHHHHHHhhhcCCEEEEEc
Q 040104 15 TGIDVSF-DCAGF--NKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 15 ~g~d~vi-d~~g~--~~~~~~~~~~l~~~G~~v~~g 47 (105)
+.+|.|| |+--. +..++.++++|++||.++.=.
T Consensus 193 ~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 193 SSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 4799776 54322 335888999999999988654
No 214
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=70.44 E-value=18 Score=23.64 Aligned_cols=33 Identities=15% Similarity=0.101 Sum_probs=25.6
Q ss_pred CCCcEEEE-----ccCChH-HHHHHHHhhhcCCEEEEEc
Q 040104 15 TGIDVSFD-----CAGFNK-TMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 15 ~g~d~vid-----~~g~~~-~~~~~~~~l~~~G~~v~~g 47 (105)
+.+|+|+. .+.++. .+..+.++++|+|.+..--
T Consensus 123 ~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~ST 161 (243)
T COG2227 123 GQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLST 161 (243)
T ss_pred CCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEec
Confidence 58999875 477766 4667999999999987753
No 215
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=70.10 E-value=20 Score=22.90 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=23.5
Q ss_pred CCCcEEEEccC---ChHHHHHHHHhhhcCCEEEEEc
Q 040104 15 TGIDVSFDCAG---FNKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 15 ~g~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~g 47 (105)
+.+|+||--.. -...++.+++++++||.++.-.
T Consensus 143 ~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 143 PEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 47998874332 2335788899999999988643
No 216
>PRK04457 spermidine synthase; Provisional
Probab=69.96 E-value=21 Score=23.25 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=23.7
Q ss_pred CCCCcEEE-EccC-C--------hHHHHHHHHhhhcCCEEEEE
Q 040104 14 GTGIDVSF-DCAG-F--------NKTMSTALSATRAGGKVCLV 46 (105)
Q Consensus 14 ~~g~d~vi-d~~g-~--------~~~~~~~~~~l~~~G~~v~~ 46 (105)
+..+|+|+ |.-. . ...+..+.++|+++|++++-
T Consensus 134 ~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 134 RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 35799877 4321 1 24578899999999999873
No 217
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=69.43 E-value=8.1 Score=17.85 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=18.3
Q ss_pred CCCHHHHHHHHHcCCCCCCCce
Q 040104 74 KNTWPLCLEFLRSGKIDIKPLV 95 (105)
Q Consensus 74 ~~~~~~~~~~v~~g~i~~~~~i 95 (105)
+-...++.+++++|.|....+|
T Consensus 13 P~s~~el~~l~~~g~i~~~tlv 34 (45)
T PF14237_consen 13 PFSLEELRQLISSGEIDPDTLV 34 (45)
T ss_pred CcCHHHHHHHHHcCCCCCCCeE
Confidence 5578899999999999877655
No 218
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=68.59 E-value=14 Score=18.88 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=22.2
Q ss_pred CCCcEEEEccCC-------hHHHHHHHHhhhcCCEEEEE
Q 040104 15 TGIDVSFDCAGF-------NKTMSTALSATRAGGKVCLV 46 (105)
Q Consensus 15 ~g~d~vid~~g~-------~~~~~~~~~~l~~~G~~v~~ 46 (105)
.++|+++..... ...+......++++|.++..
T Consensus 65 ~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 65 ESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred CceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 468888765432 33467778888999988754
No 219
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=68.42 E-value=6.9 Score=26.32 Aligned_cols=22 Identities=14% Similarity=0.360 Sum_probs=18.7
Q ss_pred HHHHHHHhhhcCCEEEEEcCCC
Q 040104 29 TMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 29 ~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
.+..+..+|++||+++++..++
T Consensus 222 ~L~~~~~~L~~gGrl~VISfHS 243 (305)
T TIGR00006 222 ALQFAPNLLAPGGRLSIISFHS 243 (305)
T ss_pred HHHHHHHHhcCCCEEEEEecCc
Confidence 4778899999999999997654
No 220
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=68.20 E-value=17 Score=22.44 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=22.3
Q ss_pred CCCcEEEEcc-----CC---hHHHHHHHHhhhcCCEEEEE
Q 040104 15 TGIDVSFDCA-----GF---NKTMSTALSATRAGGKVCLV 46 (105)
Q Consensus 15 ~g~d~vid~~-----g~---~~~~~~~~~~l~~~G~~v~~ 46 (105)
+.+|+|+... .. +..+..+.++|++||.++++
T Consensus 93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4689887642 11 23577889999999996555
No 221
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=67.88 E-value=5.2 Score=23.76 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=17.7
Q ss_pred HHHHHHHhhhcCCEEEEEcCCC
Q 040104 29 TMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 29 ~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
+++.++++|+++|.++++--++
T Consensus 74 Al~~al~lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 74 ALEAALELLKPGGIITIVVYPG 95 (140)
T ss_dssp HHHHHHHHEEEEEEEEEEE--S
T ss_pred HHHHHHHhhccCCEEEEEEeCC
Confidence 5889999999999999986543
No 222
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=67.44 E-value=18 Score=25.62 Aligned_cols=46 Identities=28% Similarity=0.354 Sum_probs=35.8
Q ss_pred hHHHHHHHHHc-CCCCcE--EEEccCChHHHHHHHHhhhcCCEEEEEcC
Q 040104 3 AEEVEKIDKAM-GTGIDV--SFDCAGFNKTMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 3 ~~~~~~~~~~~-~~g~d~--vid~~g~~~~~~~~~~~l~~~G~~v~~g~ 48 (105)
+++++..-+.. .+|.|+ +||+...+.-+..+.++.++.|--++...
T Consensus 97 DDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i 145 (472)
T COG5016 97 DDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTI 145 (472)
T ss_pred hHHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEE
Confidence 56666655555 678885 89999998889999999999988776543
No 223
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=67.37 E-value=9.2 Score=27.37 Aligned_cols=36 Identities=17% Similarity=0.133 Sum_probs=28.1
Q ss_pred CCCc--EEEEccCChHHHHHHHHhhh-cCCEEEEEcCCC
Q 040104 15 TGID--VSFDCAGFNKTMSTALSATR-AGGKVCLVGMGH 50 (105)
Q Consensus 15 ~g~d--~vid~~g~~~~~~~~~~~l~-~~G~~v~~g~~~ 50 (105)
-|+| +||||+|.-..-+.+...|+ .|..-|++..|.
T Consensus 223 ~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~ 261 (477)
T PRK08289 223 YGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPG 261 (477)
T ss_pred cCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCC
Confidence 3899 99999998776677888888 676777766554
No 224
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=67.34 E-value=13 Score=21.03 Aligned_cols=34 Identities=24% Similarity=0.164 Sum_probs=23.8
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcC
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~ 48 (105)
.++|++|.|++.....+..-.+++.|-+++..+.
T Consensus 65 ~~~Dvvf~a~~~~~~~~~~~~~~~~g~~ViD~s~ 98 (121)
T PF01118_consen 65 SDVDVVFLALPHGASKELAPKLLKAGIKVIDLSG 98 (121)
T ss_dssp TTESEEEE-SCHHHHHHHHHHHHHTTSEEEESSS
T ss_pred hcCCEEEecCchhHHHHHHHHHhhCCcEEEeCCH
Confidence 4799999999988755555556666767776653
No 225
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=67.23 E-value=31 Score=23.06 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=25.1
Q ss_pred CCCcEEEEccCChH-------------------------HHHHHHHhhhcC--CEEEEEcCCCC
Q 040104 15 TGIDVSFDCAGFNK-------------------------TMSTALSATRAG--GKVCLVGMGHH 51 (105)
Q Consensus 15 ~g~d~vid~~g~~~-------------------------~~~~~~~~l~~~--G~~v~~g~~~~ 51 (105)
+++|+.|+..|-.. ....++..+++. |+|+.++.-.+
T Consensus 90 g~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG 153 (282)
T KOG1205|consen 90 GRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAG 153 (282)
T ss_pred CCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEecccc
Confidence 58999998877532 234556666555 99999976443
No 226
>PRK10206 putative oxidoreductase; Provisional
Probab=67.22 E-value=36 Score=23.06 Aligned_cols=72 Identities=19% Similarity=0.253 Sum_probs=47.2
Q ss_pred CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccch---hh----hhcCeEEEEeecc--CCCHHHHHHHH
Q 040104 14 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLT---PA----AAREVDVVGVFRY--KNTWPLCLEFL 84 (105)
Q Consensus 14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~---~~----~~~~~~i~~~~~~--~~~~~~~~~~v 84 (105)
...+|+|+-|+......+.+..+++.| +-|.+ ..|...+.. .+ -.+++.+...+.. ...+.++-+++
T Consensus 62 ~~~iD~V~I~tp~~~H~~~~~~al~aG-khVl~---EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~~~~k~li 137 (344)
T PRK10206 62 DPDVKLVVVCTHADSHFEYAKRALEAG-KNVLV---EKPFTPTLAEAKELFALAKSKGLTVTPYQNRRFDSCFLTAKKAI 137 (344)
T ss_pred CCCCCEEEEeCCchHHHHHHHHHHHcC-CcEEE---ecCCcCCHHHHHHHHHHHHHhCCEEEEEEeeeECHHHHHHHHHH
Confidence 357999999999988888888888776 44444 223333322 22 1344555433332 67788899999
Q ss_pred HcCCC
Q 040104 85 RSGKI 89 (105)
Q Consensus 85 ~~g~i 89 (105)
.+|.+
T Consensus 138 ~~g~i 142 (344)
T PRK10206 138 ESGKL 142 (344)
T ss_pred HcCCC
Confidence 99987
No 227
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=67.01 E-value=12 Score=23.39 Aligned_cols=33 Identities=15% Similarity=0.117 Sum_probs=23.0
Q ss_pred CCCcEEEEcc-----CC-hHHHHHHHHhhhcCCEEEEEc
Q 040104 15 TGIDVSFDCA-----GF-NKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 15 ~g~d~vid~~-----g~-~~~~~~~~~~l~~~G~~v~~g 47 (105)
+.+|+|+-+- .. ...+.++.++|++||+++.+-
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 113 NSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred CCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEE
Confidence 4688876431 11 234778899999999998764
No 228
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=66.24 E-value=14 Score=24.51 Aligned_cols=41 Identities=10% Similarity=-0.015 Sum_probs=30.3
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccc
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTV 55 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~ 55 (105)
...|++|.+++....-...++.++++..++.++..++...+
T Consensus 208 ~~aDiVint~P~~ii~~~~l~~~k~~aliIDlas~Pg~tdf 248 (287)
T TIGR02853 208 AEIDIVINTIPALVLTADVLSKLPKHAVIIDLASKPGGTDF 248 (287)
T ss_pred ccCCEEEECCChHHhCHHHHhcCCCCeEEEEeCcCCCCCCH
Confidence 36899999997654234577888999999999875554444
No 229
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=66.13 E-value=21 Score=23.68 Aligned_cols=34 Identities=18% Similarity=0.152 Sum_probs=25.3
Q ss_pred CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEc
Q 040104 14 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g 47 (105)
...+|+|+||.+....-+-+...|+.|--++++.
T Consensus 60 ~~~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~S 93 (267)
T PRK13301 60 AWRPDLVVEAAGQQAIAEHAEGCLTAGLDMIICS 93 (267)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 3578999999998876666777888776666553
No 230
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=65.59 E-value=18 Score=19.14 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=23.6
Q ss_pred CCCcEEEEccCChHHHHHHHHhhh---cCC-EEEEEcC
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATR---AGG-KVCLVGM 48 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~---~~G-~~v~~g~ 48 (105)
+++.++.|..-++..+..+++.++ +.+ .++++|.
T Consensus 12 ~~~~vi~D~ahNp~s~~a~l~~l~~~~~~~~~i~V~G~ 49 (91)
T PF02875_consen 12 NGPTVIDDYAHNPDSIRALLEALKELYPKGRIIAVFGA 49 (91)
T ss_dssp TTEEEEEET--SHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHHhccCCcEEEEEcc
Confidence 578999998888888888888885 344 4556664
No 231
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=65.21 E-value=20 Score=22.17 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=22.5
Q ss_pred CCCcEEEEccC----C----hHHHHHHHHhhhcCCEEEEE
Q 040104 15 TGIDVSFDCAG----F----NKTMSTALSATRAGGKVCLV 46 (105)
Q Consensus 15 ~g~d~vid~~g----~----~~~~~~~~~~l~~~G~~v~~ 46 (105)
+.+|+|+.... . ...+....++|++||.++.+
T Consensus 94 ~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 94 GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 46898887532 1 23577888999999996554
No 232
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.15 E-value=34 Score=23.91 Aligned_cols=34 Identities=26% Similarity=0.459 Sum_probs=22.6
Q ss_pred CCCcEEEEccCCh----------HHHHHHHH-----------------hhhcCCEEEEEcC
Q 040104 15 TGIDVSFDCAGFN----------KTMSTALS-----------------ATRAGGKVCLVGM 48 (105)
Q Consensus 15 ~g~d~vid~~g~~----------~~~~~~~~-----------------~l~~~G~~v~~g~ 48 (105)
+++|++|.++|.. ..++..+. .++++|+++.++.
T Consensus 283 g~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS 343 (450)
T PRK08261 283 GGLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSS 343 (450)
T ss_pred CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECC
Confidence 3799999998842 22333333 4566799998874
No 233
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=64.67 E-value=22 Score=22.85 Aligned_cols=28 Identities=21% Similarity=0.487 Sum_probs=12.8
Q ss_pred HHHHHHHHcCCCCcE-EEEccCChHHHHH
Q 040104 5 EVEKIDKAMGTGIDV-SFDCAGFNKTMST 32 (105)
Q Consensus 5 ~~~~~~~~~~~g~d~-vid~~g~~~~~~~ 32 (105)
+.++-+++...|+|+ ++||.|-...+.+
T Consensus 167 l~~Aa~~L~~~gadlIvLDCmGYt~~~r~ 195 (221)
T PF07302_consen 167 LAAAARELAEQGADLIVLDCMGYTQEMRD 195 (221)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCHHHHH
Confidence 333334443345663 3366665543433
No 234
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=64.66 E-value=25 Score=22.60 Aligned_cols=34 Identities=26% Similarity=0.277 Sum_probs=24.5
Q ss_pred CCCCcEEEEcc-----CC-hHHHHHHHHhhhcCCEEEEEc
Q 040104 14 GTGIDVSFDCA-----GF-NKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 14 ~~g~d~vid~~-----g~-~~~~~~~~~~l~~~G~~v~~g 47 (105)
.+.+|+|+-.. .. ...+..+.++|+|||.++++-
T Consensus 110 ~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 110 ETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred CCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 35789888532 22 235788999999999998763
No 235
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=63.68 E-value=25 Score=22.60 Aligned_cols=32 Identities=13% Similarity=0.226 Sum_probs=25.8
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEE
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLV 46 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 46 (105)
..+|+|++|++...+.+.+..+|+.|=-++..
T Consensus 36 ~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~ 67 (229)
T TIGR03855 36 EDVDIVVEAASQEAVKEYAEKILKNGKDLLIM 67 (229)
T ss_pred CCCCEEEECCChHHHHHHHHHHHHCCCCEEEE
Confidence 46999999999998888888888887555553
No 236
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=63.64 E-value=23 Score=20.33 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=21.5
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEc
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g 47 (105)
++|+||+|+.+...-....+.++..+.-.+.+
T Consensus 92 ~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~ 123 (135)
T PF00899_consen 92 DYDIVIDCVDSLAARLLLNEICREYGIPFIDA 123 (135)
T ss_dssp TSSEEEEESSSHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCEEEEecCCHHHHHHHHHHHHHcCCCEEEE
Confidence 68999999988775445555666666655443
No 237
>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis. This entry includes the paralogous pair of transcription factors AFT1 and AFT2.
Probab=63.55 E-value=11 Score=21.46 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHc-CCCCcEEEEccCChH
Q 040104 2 IAEEVEKIDKAM-GTGIDVSFDCAGFNK 28 (105)
Q Consensus 2 ~~~~~~~~~~~~-~~g~d~vid~~g~~~ 28 (105)
..++...|.++. +.|+++||+-+....
T Consensus 4 k~~ikpwlq~~~~~~Gi~iVIerSd~~k 31 (111)
T PF08731_consen 4 KDEIKPWLQKIFYPQGIGIVIERSDKKK 31 (111)
T ss_pred hHHHHHHHHHHhhhcCceEEEEecCCce
Confidence 456778888887 789999999665543
No 238
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=63.15 E-value=24 Score=22.39 Aligned_cols=46 Identities=26% Similarity=0.385 Sum_probs=29.9
Q ss_pred hHHHHHHHHHcCC-CCcEEE-EccC----ChH------------HHHHHHHhhhcCCEEEEEcC
Q 040104 3 AEEVEKIDKAMGT-GIDVSF-DCAG----FNK------------TMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 3 ~~~~~~~~~~~~~-g~d~vi-d~~g----~~~------------~~~~~~~~l~~~G~~v~~g~ 48 (105)
++..+++.+..++ .+|+|+ |... ... +++-+...|+++|.++.=-.
T Consensus 97 ~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 97 EDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred ccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 4556777777754 579888 4433 221 35667778889998886543
No 239
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=63.00 E-value=21 Score=22.42 Aligned_cols=34 Identities=15% Similarity=0.051 Sum_probs=24.6
Q ss_pred CCCCcEEEE-----ccCChH-HHHHHHHhhhcCCEEEEEc
Q 040104 14 GTGIDVSFD-----CAGFNK-TMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 14 ~~g~d~vid-----~~g~~~-~~~~~~~~l~~~G~~v~~g 47 (105)
++.+|+|+- ..+++. .+..+.+.|+++|++++..
T Consensus 112 ~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 112 PGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred CCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEe
Confidence 457998853 344433 4688999999999988654
No 240
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=62.49 E-value=11 Score=23.16 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=34.1
Q ss_pred EEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC--ccccch--------hhhhcCeEEEEeecc
Q 040104 20 SFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE--MTVPLT--------PAAAREVDVVGVFRY 73 (105)
Q Consensus 20 vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~--~~~~~~--------~~~~~~~~i~~~~~~ 73 (105)
-+|..|....+...-.+|++||.+.. |+|-+. +.++.. .+++.++.+..++..
T Consensus 84 Pidp~Gdl~~m~~i~~vLK~GG~L~l-~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~i~tfs~ 146 (177)
T PF03269_consen 84 PIDPIGDLRAMAKIKCVLKPGGLLFL-GVPVGTDAIQFNAHRIYGPIRLAMMFYGFEWIDTFSG 146 (177)
T ss_pred CCCccccHHHHHHHHHhhccCCeEEE-EeecCCcceEEecceeecHhHHHHHhCCcEEEeeecc
Confidence 45566666678888899999998875 444322 223222 246677777777665
No 241
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.33 E-value=8.8 Score=25.70 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=27.3
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 49 (105)
..|+++-++|.+..+...+ +++|..++.+|..
T Consensus 201 ~ADIVIsavg~~~~v~~~~--lk~GavVIDvGin 232 (296)
T PRK14188 201 RADILVAAVGRPEMVKGDW--IKPGATVIDVGIN 232 (296)
T ss_pred cCCEEEEecCChhhcchhe--ecCCCEEEEcCCc
Confidence 5899999999998666655 9999999999964
No 242
>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=62.04 E-value=37 Score=21.38 Aligned_cols=34 Identities=26% Similarity=0.352 Sum_probs=23.2
Q ss_pred CCCcEEEEccCChH-----------------HHHHHHHhhhcCCEEEEEcC
Q 040104 15 TGIDVSFDCAGFNK-----------------TMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 15 ~g~d~vid~~g~~~-----------------~~~~~~~~l~~~G~~v~~g~ 48 (105)
+++|++|.++|... ....++..++++|+++.++.
T Consensus 47 ~~iD~li~nAG~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS 97 (241)
T PRK12428 47 GRIDALFNIAGVPGTAPVELVARVNFLGLRHLTEALLPRMAPGGAIVNVAS 97 (241)
T ss_pred CCCeEEEECCCCCCCCCHHHhhhhchHHHHHHHHHHHHhccCCcEEEEeCc
Confidence 47999999988521 23344455556799998875
No 243
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=61.87 E-value=23 Score=26.89 Aligned_cols=61 Identities=10% Similarity=-0.015 Sum_probs=39.5
Q ss_pred ccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeeccCCCHHHHHHHHHcCCCC
Q 040104 23 CAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKID 90 (105)
Q Consensus 23 ~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~g~i~ 90 (105)
-.+++...+-.+++|++|-|++-+-+.+++. -.+...++.++.. .-.+.++++.|.+..+.
T Consensus 312 Ql~g~sSvegyI~ALk~GcR~vElD~Wdg~~---~epvV~HG~TlTs----~I~l~~vl~aIk~~AF~ 372 (746)
T KOG0169|consen 312 QLGGPSSVEGYIRALKKGCRCVELDCWDGPN---GEPVVYHGHTLTS----KILLRDVLRAIKKYAFV 372 (746)
T ss_pred ccCCccccHHHHHHHHhCCeEEEEecccCCC---CCeeEecCccccc----ceeHHHHHHHHHHhccc
Confidence 3455666899999999999999998765432 2223333333321 45677777777777664
No 244
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=61.85 E-value=24 Score=23.07 Aligned_cols=34 Identities=18% Similarity=0.157 Sum_probs=23.7
Q ss_pred CCCCcEEE-Ecc---C------ChHHHHHHHHhhhcCCEEEEEc
Q 040104 14 GTGIDVSF-DCA---G------FNKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 14 ~~g~d~vi-d~~---g------~~~~~~~~~~~l~~~G~~v~~g 47 (105)
.+.+|+|| |.. + ....+..+.+.|+++|.++..+
T Consensus 143 ~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 143 ENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred CCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 35789877 432 1 1233678899999999999874
No 245
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=61.59 E-value=12 Score=22.74 Aligned_cols=26 Identities=12% Similarity=0.183 Sum_probs=22.8
Q ss_pred EEEEccCChHHHHHHHHhhhcCCEEE
Q 040104 19 VSFDCAGFNKTMSTALSATRAGGKVC 44 (105)
Q Consensus 19 ~vid~~g~~~~~~~~~~~l~~~G~~v 44 (105)
++++.+|.+.-++..+++|+|.|.+=
T Consensus 120 ~~iE~tG~~~ki~~~~~~l~~~gi~e 145 (161)
T PRK11895 120 LTIEVTGDSDKIDAFIDLLRPYGIKE 145 (161)
T ss_pred EEEEEeCCHHHHHHHHHHhhhcCCEE
Confidence 58899999998999999999999443
No 246
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=61.39 E-value=11 Score=22.56 Aligned_cols=34 Identities=15% Similarity=0.282 Sum_probs=24.1
Q ss_pred CCcEEEEccCC------hHHHHHHHHhhhcCCEEEEEcCC
Q 040104 16 GIDVSFDCAGF------NKTMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 16 g~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g~~ 49 (105)
.+|+|+-.-+- ...+.+..++|+|||+++++-..
T Consensus 44 ~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 44 EFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFN 83 (160)
T ss_pred CeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEECC
Confidence 57877653222 22588999999999999987543
No 247
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=60.81 E-value=14 Score=25.48 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=26.8
Q ss_pred CCcEEEEcc---CC--hH-HHHHHHHhhhcCCEEEEEcCCC
Q 040104 16 GIDVSFDCA---GF--NK-TMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 16 g~d~vid~~---g~--~~-~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
.+|++|+|+ |. +. ...+.++.+++++.++.++...
T Consensus 230 ~aDvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d~ 270 (370)
T TIGR00518 230 RADLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAIDQ 270 (370)
T ss_pred cCCEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEEEecCC
Confidence 689999997 33 22 1367888899999999998743
No 248
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=60.73 E-value=13 Score=22.43 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=22.7
Q ss_pred EEEEccCChHHHHHHHHhhhcCCEEE
Q 040104 19 VSFDCAGFNKTMSTALSATRAGGKVC 44 (105)
Q Consensus 19 ~vid~~g~~~~~~~~~~~l~~~G~~v 44 (105)
++++.+|.+.-++..+++|++.|.+=
T Consensus 119 ~~ie~tG~~~ki~~~~~~l~~~gi~e 144 (157)
T TIGR00119 119 YTVEVTGDSDKIDAFLELLRPFGIKE 144 (157)
T ss_pred EEEEEcCCHHHHHHHHHHhhhcCCEE
Confidence 58899999998999999999999443
No 249
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=60.60 E-value=18 Score=24.78 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=24.5
Q ss_pred CCCcEEEEcc-----CC-hHHHHHHHHhhhcCCEEEEEcC
Q 040104 15 TGIDVSFDCA-----GF-NKTMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 15 ~g~d~vid~~-----g~-~~~~~~~~~~l~~~G~~v~~g~ 48 (105)
+.+|+|+-+- .. ...+.++.+.|++||++++++.
T Consensus 177 ~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 177 DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred CceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 3578777532 12 2357899999999999988763
No 250
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=60.12 E-value=29 Score=19.44 Aligned_cols=33 Identities=21% Similarity=0.178 Sum_probs=23.1
Q ss_pred CCcEEEEccCChHHHHH---HHHhhhcCCEEEEEcC
Q 040104 16 GIDVSFDCAGFNKTMST---ALSATRAGGKVCLVGM 48 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~---~~~~l~~~G~~v~~g~ 48 (105)
..|++|-|++....... ....+++|..++.++.
T Consensus 65 ~~DvV~~~~~~~~~~~~~~~~~~~~~~g~~viD~s~ 100 (122)
T smart00859 65 AVDIVFLALPHGVSKEIAPLLPKAAEAGVKVIDLSS 100 (122)
T ss_pred CCCEEEEcCCcHHHHHHHHHHHhhhcCCCEEEECCc
Confidence 68999999998874442 3344567777777764
No 251
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=59.58 E-value=12 Score=25.05 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=27.4
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
.+|++|-++|.+..+.. +.++++..++.+|.+.
T Consensus 201 ~ADIVIsAvg~p~~i~~--~~vk~gavVIDvGi~~ 233 (286)
T PRK14175 201 DADVIVSAVGKPGLVTK--DVVKEGAVIIDVGNTP 233 (286)
T ss_pred hCCEEEECCCCCcccCH--HHcCCCcEEEEcCCCc
Confidence 68999999999975555 5689999999999754
No 252
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=59.39 E-value=16 Score=22.31 Aligned_cols=43 Identities=9% Similarity=0.147 Sum_probs=29.3
Q ss_pred CCcEEEEccCChHH-HHHHHHhhhcCCEEEEEcCCCCCccccchhh
Q 040104 16 GIDVSFDCAGFNKT-MSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60 (105)
Q Consensus 16 g~d~vid~~g~~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~ 60 (105)
..|++|-++|+... -.+-+..++++..++.+|.... ++++..+
T Consensus 78 ~adi~vtaTG~~~vi~~e~~~~mkdgail~n~Gh~d~--Eid~~~L 121 (162)
T PF00670_consen 78 DADIFVTATGNKDVITGEHFRQMKDGAILANAGHFDV--EIDVDAL 121 (162)
T ss_dssp T-SEEEE-SSSSSSB-HHHHHHS-TTEEEEESSSSTT--SBTHHHH
T ss_pred hCCEEEECCCCccccCHHHHHHhcCCeEEeccCcCce--eEeeccc
Confidence 57999999999774 3578999999999999986543 3444433
No 253
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=59.28 E-value=31 Score=23.57 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=25.8
Q ss_pred CCCcEEEEccCC-----------hHHHHHHHHhhhcCCEEEEEcCC
Q 040104 15 TGIDVSFDCAGF-----------NKTMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 15 ~g~d~vid~~g~-----------~~~~~~~~~~l~~~G~~v~~g~~ 49 (105)
+.+|+|+-...- ...+..+.+.|++||++.+++..
T Consensus 260 ~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 260 GRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred CCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 468988864221 23477889999999999999754
No 254
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=59.15 E-value=23 Score=21.66 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=22.2
Q ss_pred CCCcEEEEcc-CC-hHHHHHHHHhhhcCCEEEEE
Q 040104 15 TGIDVSFDCA-GF-NKTMSTALSATRAGGKVCLV 46 (105)
Q Consensus 15 ~g~d~vid~~-g~-~~~~~~~~~~l~~~G~~v~~ 46 (105)
+.+|+|+-.. .. +..++.+.++|+++|+++..
T Consensus 108 ~~fD~I~s~~~~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 108 EQFDVITSRALASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred CCccEEEehhhhCHHHHHHHHHHhcCCCCEEEEE
Confidence 4688777432 22 23466778899999999876
No 255
>PRK01581 speE spermidine synthase; Validated
Probab=59.14 E-value=41 Score=23.47 Aligned_cols=35 Identities=9% Similarity=-0.116 Sum_probs=24.3
Q ss_pred CCCCcEEEEccCCh-----------HHHHHHHHhhhcCCEEEEEcC
Q 040104 14 GTGIDVSFDCAGFN-----------KTMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 14 ~~g~d~vid~~g~~-----------~~~~~~~~~l~~~G~~v~~g~ 48 (105)
++.+|+||--...+ +-+..+.+.|+++|.++.-..
T Consensus 224 ~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 224 SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 45799877433222 236788999999999887653
No 256
>PLN02244 tocopherol O-methyltransferase
Probab=58.98 E-value=23 Score=24.00 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=24.3
Q ss_pred CCCcEEEEccC-----C-hHHHHHHHHhhhcCCEEEEEcC
Q 040104 15 TGIDVSFDCAG-----F-NKTMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 15 ~g~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 48 (105)
+.+|+|+-.-. + ...+.++.++|+|||++++...
T Consensus 185 ~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 185 GQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred CCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 35788875321 2 2357889999999999998753
No 257
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=58.79 E-value=22 Score=21.57 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=23.1
Q ss_pred CCCcEEEEccC--C-hHHHHHHHHhhhcCCEEEEEc
Q 040104 15 TGIDVSFDCAG--F-NKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 15 ~g~d~vid~~g--~-~~~~~~~~~~l~~~G~~v~~g 47 (105)
+.+|+++.... . ...+..+.+.|+++|+++...
T Consensus 96 ~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 96 GKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred cCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEE
Confidence 46898885321 1 234678899999999987753
No 258
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=58.46 E-value=26 Score=23.65 Aligned_cols=31 Identities=23% Similarity=0.272 Sum_probs=21.1
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEE
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCL 45 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~ 45 (105)
..+|+||++++...+.+.+..++..|-.++.
T Consensus 69 ~dIDiVf~AT~a~~H~e~a~~a~eaGk~VID 99 (302)
T PRK08300 69 DDIDIVFDATSAGAHVRHAAKLREAGIRAID 99 (302)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHcCCeEEE
Confidence 4699999999998755555555555444443
No 259
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.40 E-value=11 Score=25.10 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=27.2
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 49 (105)
.+|++|-++|.+..+.. +++++|..++.+|..
T Consensus 202 ~ADIvi~avG~p~~v~~--~~vk~gavVIDvGin 233 (285)
T PRK10792 202 NADLLVVAVGKPGFIPG--EWIKPGAIVIDVGIN 233 (285)
T ss_pred hCCEEEEcCCCcccccH--HHcCCCcEEEEcccc
Confidence 68999999999985443 889999999999954
No 260
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=58.10 E-value=36 Score=22.25 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=31.3
Q ss_pred HHHHHHHcCCCCcEEEEccCChH----------HHHH----------------HHHhhhcCCEEEEEcCCCCCcccc
Q 040104 6 VEKIDKAMGTGIDVSFDCAGFNK----------TMST----------------ALSATRAGGKVCLVGMGHHEMTVP 56 (105)
Q Consensus 6 ~~~~~~~~~~g~d~vid~~g~~~----------~~~~----------------~~~~l~~~G~~v~~g~~~~~~~~~ 56 (105)
..++++.+.+..|+.++..|.+. ++++ ...+.+..|+||.+|....-.+++
T Consensus 71 ~~evr~~~~Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~vpfp 147 (289)
T KOG1209|consen 71 SGEVRANPDGKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVVPFP 147 (289)
T ss_pred HHHHhhCCCCceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEEeccc
Confidence 34455545567999998877652 1222 234567889999998644333333
No 261
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=57.86 E-value=14 Score=24.74 Aligned_cols=22 Identities=18% Similarity=0.533 Sum_probs=18.6
Q ss_pred HHHHHHHhhhcCCEEEEEcCCC
Q 040104 29 TMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 29 ~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
.+..+..+|++||+++++..++
T Consensus 218 ~L~~~~~~L~~gGrl~visfHS 239 (296)
T PRK00050 218 ALEAALDLLKPGGRLAVISFHS 239 (296)
T ss_pred HHHHHHHHhcCCCEEEEEecCc
Confidence 4778889999999999997654
No 262
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.79 E-value=20 Score=23.86 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=26.0
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 49 (105)
.+|++|-++|.+..+... ++++|..++.+|..
T Consensus 195 ~ADIvI~Avgk~~lv~~~--~vk~GavVIDVgi~ 226 (279)
T PRK14178 195 QADILVSAAGKAGFITPD--MVKPGATVIDVGIN 226 (279)
T ss_pred hCCEEEECCCcccccCHH--HcCCCcEEEEeecc
Confidence 689999999988754443 47999999999965
No 263
>PLN03075 nicotianamine synthase; Provisional
Probab=57.68 E-value=21 Score=23.99 Aligned_cols=33 Identities=21% Similarity=0.123 Sum_probs=25.1
Q ss_pred CCCcEEEEcc-------CChHHHHHHHHhhhcCCEEEEEc
Q 040104 15 TGIDVSFDCA-------GFNKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 15 ~g~d~vid~~-------g~~~~~~~~~~~l~~~G~~v~~g 47 (105)
+.+|+||-.+ .....++...+.|++||.++.-.
T Consensus 194 ~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 194 KEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred CCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 4799888654 22336888999999999998764
No 264
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=57.52 E-value=21 Score=24.74 Aligned_cols=33 Identities=12% Similarity=0.066 Sum_probs=24.0
Q ss_pred CCCcEEEE-----ccCC---hHHHHHHHHhhhcCCEEEEEc
Q 040104 15 TGIDVSFD-----CAGF---NKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 15 ~g~d~vid-----~~g~---~~~~~~~~~~l~~~G~~v~~g 47 (105)
+.+|.|+. .+|. ...+..+.++|+|||++++..
T Consensus 227 ~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 227 GQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred CCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 46888764 3444 235788899999999998764
No 265
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=56.92 E-value=26 Score=23.76 Aligned_cols=33 Identities=27% Similarity=0.263 Sum_probs=23.2
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEc
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g 47 (105)
.++|+||.|+|.....+.+-.++..|..++..+
T Consensus 62 ~~vDvVf~A~g~g~s~~~~~~~~~~G~~VIDlS 94 (334)
T PRK14874 62 SGVDIALFSAGGSVSKKYAPKAAAAGAVVIDNS 94 (334)
T ss_pred cCCCEEEECCChHHHHHHHHHHHhCCCEEEECC
Confidence 379999999999875555555666666555443
No 266
>PLN02823 spermine synthase
Probab=56.77 E-value=38 Score=23.14 Aligned_cols=35 Identities=17% Similarity=0.084 Sum_probs=22.6
Q ss_pred cCCCCcEEE-EccC----Ch-------HHHH-HHHHhhhcCCEEEEEc
Q 040104 13 MGTGIDVSF-DCAG----FN-------KTMS-TALSATRAGGKVCLVG 47 (105)
Q Consensus 13 ~~~g~d~vi-d~~g----~~-------~~~~-~~~~~l~~~G~~v~~g 47 (105)
.++.+|+|| |+.. ++ +-+. .+.+.|+++|.++.-.
T Consensus 173 ~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 173 RDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred CCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 345799877 5321 11 2244 6788999999987653
No 267
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=56.50 E-value=29 Score=20.02 Aligned_cols=32 Identities=16% Similarity=0.122 Sum_probs=21.2
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEE
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLV 46 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 46 (105)
.++|+||+|..+........+.++..|.-.+.
T Consensus 88 ~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~ 119 (143)
T cd01483 88 DGVDLVIDAIDNIAVRRALNRACKELGIPVID 119 (143)
T ss_pred cCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 46899999988877544555666666544443
No 268
>PRK08317 hypothetical protein; Provisional
Probab=56.46 E-value=27 Score=21.64 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=23.4
Q ss_pred CCCcEEEEc-----cCC-hHHHHHHHHhhhcCCEEEEEc
Q 040104 15 TGIDVSFDC-----AGF-NKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 15 ~g~d~vid~-----~g~-~~~~~~~~~~l~~~G~~v~~g 47 (105)
+.+|+|+-. ..+ ...+....++|+++|.++...
T Consensus 86 ~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 86 GSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred CCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 357776642 222 235889999999999998875
No 269
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=56.13 E-value=48 Score=20.80 Aligned_cols=56 Identities=14% Similarity=-0.019 Sum_probs=34.4
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhh-hcCeEEEEe
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAA-AREVDVVGV 70 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~i~~~ 70 (105)
.++++||-++|.+..-......++..|..|.+....+...+.+.... ...+++.-+
T Consensus 68 ~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~iais 124 (205)
T TIGR01470 68 EGAFLVIAATDDEELNRRVAHAARARGVPVNVVDDPELCSFIFPSIVDRSPVVVAIS 124 (205)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCeEEEeeEEEcCCEEEEEE
Confidence 37899999999987555677777788888876432222233333332 234555433
No 270
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=55.80 E-value=15 Score=21.16 Aligned_cols=34 Identities=9% Similarity=0.076 Sum_probs=25.0
Q ss_pred CCCCcEEEEccC-----C-hHHHHHHHHhhhcCCEEEEEc
Q 040104 14 GTGIDVSFDCAG-----F-NKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 14 ~~g~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g 47 (105)
++.+|+|+-+-. + ...+....++|+|+|.+++.-
T Consensus 76 ~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~ 115 (161)
T PF13489_consen 76 DGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISD 115 (161)
T ss_dssp SSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEE
T ss_pred ccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEE
Confidence 457898886522 2 235888999999999998874
No 271
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=55.70 E-value=9.6 Score=24.01 Aligned_cols=40 Identities=8% Similarity=-0.041 Sum_probs=30.8
Q ss_pred HHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104 9 IDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 9 ~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
+++.+ +.+|++|-++|.+. +.---+++++|..++.+|...
T Consensus 120 l~~~~-~~ADIVIsAvG~~~-~~i~~d~ik~GavVIDVGi~~ 159 (197)
T cd01079 120 TLDCL-SQSDVVITGVPSPN-YKVPTELLKDGAICINFASIK 159 (197)
T ss_pred HHHHh-hhCCEEEEccCCCC-CccCHHHcCCCcEEEEcCCCc
Confidence 34433 36899999999998 534478899999999999653
No 272
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=55.61 E-value=50 Score=22.05 Aligned_cols=30 Identities=23% Similarity=0.259 Sum_probs=21.9
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEE
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVC 44 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v 44 (105)
..+|+|+++++...+.+.+..++..|-.++
T Consensus 63 ~dIDaV~iaTp~~~H~e~a~~al~aGk~VI 92 (285)
T TIGR03215 63 PDIDIVFDATSAKAHARHARLLAELGKIVI 92 (285)
T ss_pred CCCCEEEECCCcHHHHHHHHHHHHcCCEEE
Confidence 469999999999886666666665554443
No 273
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=55.58 E-value=47 Score=20.46 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=26.5
Q ss_pred CCCCcEEEEccCChHHHHHHHHhhhcC-CEEEEEcC
Q 040104 14 GTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGM 48 (105)
Q Consensus 14 ~~g~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~ 48 (105)
.+.+|.++-++|... |....+.++.. +++.++|.
T Consensus 108 ~~~~D~ivl~SgD~D-F~p~v~~~~~~G~rv~v~~~ 142 (181)
T COG1432 108 KKNVDTIVLFSGDGD-FIPLVEAARDKGKRVEVAGI 142 (181)
T ss_pred ccCCCEEEEEcCCcc-HHHHHHHHHHcCCEEEEEec
Confidence 458999999999988 88888888665 45555554
No 274
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=55.56 E-value=21 Score=24.33 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=25.7
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcC
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~ 48 (105)
.+.|+|+-|+.... -----+.|++|-.+..+|.
T Consensus 194 ~~aDiIvt~T~s~~-Pil~~~~l~~G~hI~aiGa 226 (330)
T COG2423 194 EGADIVVTATPSTE-PVLKAEWLKPGTHINAIGA 226 (330)
T ss_pred hcCCEEEEecCCCC-CeecHhhcCCCcEEEecCC
Confidence 36899999988765 3344577889999999986
No 275
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=55.35 E-value=26 Score=21.55 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=24.5
Q ss_pred CCCcEEEEccC-----C-hHHHHHHHHhhhcCCEEEEEcCC
Q 040104 15 TGIDVSFDCAG-----F-NKTMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 15 ~g~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g~~ 49 (105)
+.+|+++-.-+ . ...+..+...|++||+++++...
T Consensus 105 ~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 105 NSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred CcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 35787764321 1 23578889999999999988753
No 276
>PRK07402 precorrin-6B methylase; Provisional
Probab=55.24 E-value=46 Score=20.38 Aligned_cols=21 Identities=10% Similarity=0.302 Sum_probs=17.5
Q ss_pred HHHHHHHHhhhcCCEEEEEcC
Q 040104 28 KTMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 28 ~~~~~~~~~l~~~G~~v~~g~ 48 (105)
..+..+.+.|++||+++....
T Consensus 123 ~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 123 EILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred HHHHHHHHhcCCCeEEEEEee
Confidence 557888999999999988853
No 277
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=55.12 E-value=54 Score=21.61 Aligned_cols=78 Identities=14% Similarity=0.148 Sum_probs=39.8
Q ss_pred CCCCc-EEEEccCChHH-------HHHHHHhhh------cCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc----CC
Q 040104 14 GTGID-VSFDCAGFNKT-------MSTALSATR------AGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY----KN 75 (105)
Q Consensus 14 ~~g~d-~vid~~g~~~~-------~~~~~~~l~------~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~----~~ 75 (105)
.+++| ++||+.|.... +....+.+. +.+++.++....+...+.......+...+.|.... ..
T Consensus 152 ~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~IlTKlDe~~ 231 (272)
T TIGR00064 152 ARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTA 231 (272)
T ss_pred HCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEEEEccCCCC
Confidence 35789 67799987641 222233444 77888877543332222222222233344454433 34
Q ss_pred CHHHHHHHHHcCCCCC
Q 040104 76 TWPLCLEFLRSGKIDI 91 (105)
Q Consensus 76 ~~~~~~~~v~~g~i~~ 91 (105)
....+++....-++++
T Consensus 232 ~~G~~l~~~~~~~~Pi 247 (272)
T TIGR00064 232 KGGIILSIAYELKLPI 247 (272)
T ss_pred CccHHHHHHHHHCcCE
Confidence 4555666665545543
No 278
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=54.16 E-value=20 Score=22.76 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=22.2
Q ss_pred CCcEEEEccCC--------hHHHHHHHHhhhcCCEEEEEc
Q 040104 16 GIDVSFDCAGF--------NKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 16 g~d~vid~~g~--------~~~~~~~~~~l~~~G~~v~~g 47 (105)
.+|.|+|.+-- ...+....++|+|||+..+++
T Consensus 116 ~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~ 155 (218)
T PRK13255 116 DVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVT 155 (218)
T ss_pred CeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 56888885421 123778899999999765543
No 279
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.83 E-value=15 Score=24.67 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=27.2
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 49 (105)
..|++|-++|.+..+...+ +++|..++.+|..
T Consensus 202 ~ADIVIsavg~~~~v~~~~--ik~GaiVIDvgin 233 (301)
T PRK14194 202 QADIVVAAVGRPRLIDADW--LKPGAVVIDVGIN 233 (301)
T ss_pred cCCEEEEecCChhcccHhh--ccCCcEEEEeccc
Confidence 5899999999998666655 9999999999864
No 280
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=53.75 E-value=20 Score=22.14 Aligned_cols=25 Identities=8% Similarity=0.057 Sum_probs=22.3
Q ss_pred EEEEccCChHHHHHHHHhhhcCCEE
Q 040104 19 VSFDCAGFNKTMSTALSATRAGGKV 43 (105)
Q Consensus 19 ~vid~~g~~~~~~~~~~~l~~~G~~ 43 (105)
++++.+|.+.-++..+++|++.|.+
T Consensus 120 ~~ie~tG~~~ki~a~~~~l~~~gi~ 144 (174)
T CHL00100 120 LILEVTGDPGKIVAIEQLLEKFGII 144 (174)
T ss_pred EEEEEcCCHHHHHHHHHHhhhcCCE
Confidence 6889999999899999999999943
No 281
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=53.05 E-value=43 Score=19.34 Aligned_cols=32 Identities=22% Similarity=0.179 Sum_probs=22.9
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEc
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g 47 (105)
+++|.++=.+|... +..+++.++..|.-+.+-
T Consensus 98 ~~~d~ivLvSgD~D-f~~~i~~lr~~G~~V~v~ 129 (149)
T cd06167 98 RRIDTIVLVSGDSD-FVPLVERLRELGKRVIVV 129 (149)
T ss_pred cCCCEEEEEECCcc-HHHHHHHHHHcCCEEEEE
Confidence 36777777777776 777777777777666553
No 282
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=52.69 E-value=49 Score=21.58 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=22.6
Q ss_pred CCCcEEE-EccCC--hHHHHHHHHhhhcCCEEEEE
Q 040104 15 TGIDVSF-DCAGF--NKTMSTALSATRAGGKVCLV 46 (105)
Q Consensus 15 ~g~d~vi-d~~g~--~~~~~~~~~~l~~~G~~v~~ 46 (105)
+.+|.|| |+--. +.-++.++.++++||.++.=
T Consensus 155 ~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 155 GTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred CcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 4799777 54322 22477889999999998764
No 283
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=52.50 E-value=52 Score=20.07 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=21.6
Q ss_pred CCCCcEEEEccCChHHHHHHHHhhhcCCEEEE
Q 040104 14 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCL 45 (105)
Q Consensus 14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~ 45 (105)
.+.+|.++=++|... |......++..|.-|.
T Consensus 103 ~~~iD~~vLvSgD~D-F~~Lv~~lre~G~~V~ 133 (160)
T TIGR00288 103 NPNIDAVALVTRDAD-FLPVINKAKENGKETI 133 (160)
T ss_pred cCCCCEEEEEeccHh-HHHHHHHHHHCCCEEE
Confidence 456788887788776 7777777776665443
No 284
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=52.41 E-value=9.2 Score=25.82 Aligned_cols=22 Identities=14% Similarity=0.404 Sum_probs=18.6
Q ss_pred HHHHHHHhhhcCCEEEEEcCCC
Q 040104 29 TMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 29 ~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
.+..+..+|++||+++++..++
T Consensus 223 ~L~~a~~~L~~gGrl~VISFHS 244 (310)
T PF01795_consen 223 GLEAAPDLLKPGGRLVVISFHS 244 (310)
T ss_dssp HHHHHHHHEEEEEEEEEEESSH
T ss_pred HHHHHHHHhcCCcEEEEEEecc
Confidence 4778899999999999997653
No 285
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=52.36 E-value=56 Score=20.44 Aligned_cols=32 Identities=3% Similarity=-0.066 Sum_probs=22.9
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEc
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g 47 (105)
.++|+||-|+++++ ++..+...+..+.++.+.
T Consensus 69 ~~adlViaaT~d~e-lN~~i~~~a~~~~lvn~~ 100 (202)
T PRK06718 69 VDAFLVIAATNDPR-VNEQVKEDLPENALFNVI 100 (202)
T ss_pred CCceEEEEcCCCHH-HHHHHHHHHHhCCcEEEC
Confidence 36899999999998 666555555556666664
No 286
>PLN02618 tryptophan synthase, beta chain
Probab=52.05 E-value=53 Score=23.20 Aligned_cols=36 Identities=14% Similarity=0.095 Sum_probs=22.7
Q ss_pred HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcC
Q 040104 5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG 40 (105)
Q Consensus 5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~ 40 (105)
+.+++.+..++.+|.||-|+|+...+.-.+..++.+
T Consensus 228 i~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~~ 263 (410)
T PLN02618 228 TRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFIDD 263 (410)
T ss_pred HHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHhC
Confidence 344455555557999999998877555444444433
No 287
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=51.44 E-value=29 Score=22.83 Aligned_cols=33 Identities=15% Similarity=0.146 Sum_probs=22.9
Q ss_pred CCCcEEEEccC--------ChHHHHHHHHhhhcCCEEEEEc
Q 040104 15 TGIDVSFDCAG--------FNKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 15 ~g~d~vid~~g--------~~~~~~~~~~~l~~~G~~v~~g 47 (105)
+.+|+|+...- .+..+....++|++||.++.+.
T Consensus 183 ~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 183 EEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred CCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 46898886521 1235778889999999966553
No 288
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=51.30 E-value=19 Score=23.44 Aligned_cols=34 Identities=15% Similarity=0.089 Sum_probs=24.2
Q ss_pred CCcEEEEcc-----CC-hHHHHHHHHhhhcCCEEEEEcCC
Q 040104 16 GIDVSFDCA-----GF-NKTMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 16 g~d~vid~~-----g~-~~~~~~~~~~l~~~G~~v~~g~~ 49 (105)
.+|+|+-.- .+ ...+.+..+.|+|||+++++-..
T Consensus 145 sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 145 YFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred CEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 578776432 12 23588999999999999888543
No 289
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=51.22 E-value=51 Score=23.31 Aligned_cols=37 Identities=24% Similarity=0.132 Sum_probs=28.2
Q ss_pred HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCC
Q 040104 4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGG 41 (105)
Q Consensus 4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G 41 (105)
.+.+.+-+.++ ..|.||=|..+.++.+.++++.|+.+
T Consensus 88 ~la~~L~~~s~-~~d~vff~NSGaEA~EaAiKlARk~~ 124 (404)
T COG4992 88 ELAEKLVELSP-FADRVFFCNSGAEANEAALKLARKYT 124 (404)
T ss_pred HHHHHHHhhCc-cccEEEEcCCcHHHHHHHHHHHHHHc
Confidence 45556666655 58999988777777999999998875
No 290
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=51.19 E-value=23 Score=24.38 Aligned_cols=36 Identities=17% Similarity=0.137 Sum_probs=24.0
Q ss_pred hHHHHHHHHHcCCCCcEEEEccCChH-HHHHHHHhhh
Q 040104 3 AEEVEKIDKAMGTGIDVSFDCAGFNK-TMSTALSATR 38 (105)
Q Consensus 3 ~~~~~~~~~~~~~g~d~vid~~g~~~-~~~~~~~~l~ 38 (105)
++..+++.+..|+-+|.++-|+|+.+ ++-.....+.
T Consensus 210 ~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~ 246 (396)
T COG0133 210 EEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID 246 (396)
T ss_pred HHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccC
Confidence 34557777777888999999998754 3333333343
No 291
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=50.87 E-value=20 Score=20.91 Aligned_cols=33 Identities=12% Similarity=0.220 Sum_probs=24.8
Q ss_pred CCCcEEEEcc-----CCh-HHHHHHHHhhhcCCEEEEEc
Q 040104 15 TGIDVSFDCA-----GFN-KTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 15 ~g~d~vid~~-----g~~-~~~~~~~~~l~~~G~~v~~g 47 (105)
+.+|+|+... ..+ ..+....++++++|.++..-
T Consensus 72 ~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~ 110 (152)
T PF13847_consen 72 EKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISD 110 (152)
T ss_dssp TTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEE
Confidence 4789988852 222 35788999999999988764
No 292
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=50.85 E-value=56 Score=22.95 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=24.8
Q ss_pred HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcC
Q 040104 4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~ 48 (105)
++.+++.+..++.+|.+|-|+|+...+.-.+......-.+-++|+
T Consensus 214 Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~~~~v~iigV 258 (397)
T PRK04346 214 EAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFIDDESVRLIGV 258 (397)
T ss_pred HHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhhCCCCeEEEE
Confidence 334444444455689999999887644444333333333334443
No 293
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=50.74 E-value=36 Score=21.12 Aligned_cols=34 Identities=12% Similarity=0.229 Sum_probs=24.5
Q ss_pred CCCcEEEEccC-----C-hHHHHHHHHhhhcCCEEEEEcC
Q 040104 15 TGIDVSFDCAG-----F-NKTMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 15 ~g~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 48 (105)
+.+|+|+-... + ...+....++|+++|.++....
T Consensus 97 ~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 97 SSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred CceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 46888886432 2 2357889999999999997653
No 294
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=50.69 E-value=28 Score=22.53 Aligned_cols=43 Identities=12% Similarity=0.100 Sum_probs=27.3
Q ss_pred HHHHHHHHcCCCCcEEE-EccC---------ChHHHHHHHHhhhcCCEEEEEc
Q 040104 5 EVEKIDKAMGTGIDVSF-DCAG---------FNKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 5 ~~~~~~~~~~~g~d~vi-d~~g---------~~~~~~~~~~~l~~~G~~v~~g 47 (105)
..+.+++...+.+|+|| |... ..+-++.+.++|+++|.++.-+
T Consensus 139 g~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 139 GRKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp HHHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred hHHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 33444443222799877 6543 1234778999999999999765
No 295
>PRK08618 ornithine cyclodeaminase; Validated
Probab=50.69 E-value=21 Score=24.01 Aligned_cols=33 Identities=12% Similarity=0.119 Sum_probs=26.4
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
..|+|+.|+++...+ -. +.+++|-.+..+|...
T Consensus 192 ~aDiVi~aT~s~~p~-i~-~~l~~G~hV~~iGs~~ 224 (325)
T PRK08618 192 EADIIVTVTNAKTPV-FS-EKLKKGVHINAVGSFM 224 (325)
T ss_pred cCCEEEEccCCCCcc-hH-HhcCCCcEEEecCCCC
Confidence 689999999887633 34 8999999999999754
No 296
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=50.69 E-value=38 Score=23.09 Aligned_cols=33 Identities=27% Similarity=0.249 Sum_probs=23.3
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEc
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g 47 (105)
.++|++|.|+|.....+.+-.++..|.+++..+
T Consensus 60 ~~~D~v~~a~g~~~s~~~a~~~~~~G~~VID~s 92 (339)
T TIGR01296 60 EGIDIALFSAGGSVSKEFAPKAAKCGAIVIDNT 92 (339)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHCCCEEEECC
Confidence 479999999999886666666666655555443
No 297
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=50.64 E-value=47 Score=20.48 Aligned_cols=39 Identities=8% Similarity=0.083 Sum_probs=28.7
Q ss_pred HHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEc
Q 040104 8 KIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 8 ~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g 47 (105)
.+++.+..+ +.||-+.|+.-.-+....+|+..|.++.+-
T Consensus 64 vl~~l~~~~-~~ViaTGGG~v~~~enr~~l~~~g~vv~L~ 102 (172)
T COG0703 64 VLKELLEED-NAVIATGGGAVLSEENRNLLKKRGIVVYLD 102 (172)
T ss_pred HHHHHhhcC-CeEEECCCccccCHHHHHHHHhCCeEEEEe
Confidence 344555333 688888777765688999999999888774
No 298
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=50.54 E-value=42 Score=18.43 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=18.1
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCC
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGG 41 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G 41 (105)
..+|+|+-+++.....+.+..+++.|-
T Consensus 61 ~~~D~V~I~tp~~~h~~~~~~~l~~g~ 87 (120)
T PF01408_consen 61 EDVDAVIIATPPSSHAEIAKKALEAGK 87 (120)
T ss_dssp TTESEEEEESSGGGHHHHHHHHHHTTS
T ss_pred hcCCEEEEecCCcchHHHHHHHHHcCC
Confidence 367888888877775666666665554
No 299
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=50.19 E-value=41 Score=22.20 Aligned_cols=34 Identities=12% Similarity=0.214 Sum_probs=22.2
Q ss_pred HHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCE
Q 040104 9 IDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGK 42 (105)
Q Consensus 9 ~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~ 42 (105)
+.++.+.++|+||||.-+-..=-..+..+..++.
T Consensus 114 ~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki 147 (263)
T COG1179 114 LEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKI 147 (263)
T ss_pred HHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCC
Confidence 4445566899999999887633344454555553
No 300
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=49.62 E-value=59 Score=22.76 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=16.0
Q ss_pred HHHHHhhhcCCEEEEEcCCC
Q 040104 31 STALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 31 ~~~~~~l~~~G~~v~~g~~~ 50 (105)
..++++|+++|.++.+.++.
T Consensus 323 ~~a~~lLk~gG~lv~~scs~ 342 (396)
T PRK15128 323 MLAIQLLNPGGILLTFSCSG 342 (396)
T ss_pred HHHHHHcCCCeEEEEEeCCC
Confidence 45789999999999887543
No 301
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=49.55 E-value=76 Score=21.11 Aligned_cols=66 Identities=17% Similarity=0.236 Sum_probs=36.0
Q ss_pred CCCCcEEEEccCChHHHHHHHHhhhcCCEE-EEEcCCCCCccccchhhhhcCeEEEEeecc--CCCHHHHHHHHHcCC
Q 040104 14 GTGIDVSFDCAGFNKTMSTALSATRAGGKV-CLVGMGHHEMTVPLTPAAAREVDVVGVFRY--KNTWPLCLEFLRSGK 88 (105)
Q Consensus 14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~-v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~v~~g~ 88 (105)
..|+|+++-+.|... ...++..+..|.. -.+|......... .+ ++.+|... ...+.++++.+.+|.
T Consensus 186 ~~GaDvI~~~ag~~~--~gv~~aa~e~g~~~~~IG~d~dq~~~~------p~-~vltS~~k~~~~~~~~~i~~~~~g~ 254 (306)
T PF02608_consen 186 DQGADVIFPVAGGSG--QGVIQAAKEAGVYGYVIGVDSDQSYLA------PN-NVLTSVVKNWDQAVYDIIKDVLDGT 254 (306)
T ss_dssp HTT-SEEEEE-CCCH--HHHHHHHHHHTHETEEEEEES--CCSS------TT-CEEEEEEEEHHHHHHHHHHHHHTTT
T ss_pred hcCCeEEEECCCCCc--hHHHHHHHHcCCceEEEEecccccccC------CC-eEEEEEEEcCHHHHHHHHHHHHcCC
Confidence 679999999877644 5556666666654 3345432211111 11 23344433 566777788888887
No 302
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=49.50 E-value=45 Score=23.42 Aligned_cols=20 Identities=10% Similarity=0.272 Sum_probs=16.9
Q ss_pred HHHHHHHhhhcCCEEEEEcC
Q 040104 29 TMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 29 ~~~~~~~~l~~~G~~v~~g~ 48 (105)
.+..++++|++||+++..-+
T Consensus 350 lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 350 ILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred HHHHHHHhcCCCcEEEEEeC
Confidence 57789999999999997654
No 303
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=49.48 E-value=53 Score=20.38 Aligned_cols=20 Identities=10% Similarity=0.277 Sum_probs=15.4
Q ss_pred HHHHHHHHhhhcCCEEEEEc
Q 040104 28 KTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 28 ~~~~~~~~~l~~~G~~v~~g 47 (105)
..+..+.++|+++|.+++..
T Consensus 137 ~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 137 EFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred HHHHHHHHHcCCCCEEEEEc
Confidence 34778888889998888763
No 304
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.21 E-value=17 Score=24.28 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=27.4
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 49 (105)
.+|++|-++|.+..+.. +++++|..++.+|..
T Consensus 201 ~ADIVV~avG~~~~i~~--~~ik~gavVIDVGin 232 (285)
T PRK14189 201 QADIVVAAVGKRNVLTA--DMVKPGATVIDVGMN 232 (285)
T ss_pred hCCEEEEcCCCcCccCH--HHcCCCCEEEEcccc
Confidence 58999999999884443 899999999999964
No 305
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=49.19 E-value=70 Score=20.60 Aligned_cols=56 Identities=4% Similarity=-0.162 Sum_probs=31.6
Q ss_pred CCCcEEEEccCChHHHHHH-HHhhhcCCEEEEEcCCCCCccccchhhhh-cCeEEEEee
Q 040104 15 TGIDVSFDCAGFNKTMSTA-LSATRAGGKVCLVGMGHHEMTVPLTPAAA-REVDVVGVF 71 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~-~~~l~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~i~~~~ 71 (105)
.++++||-|++++. ++.. ...++..+.++.....+..-.+-++...- ..++|.-|.
T Consensus 84 ~g~~LViaATdD~~-vN~~I~~~a~~~~~lvn~vd~p~~~dFi~PAiv~rg~l~IaIST 141 (223)
T PRK05562 84 KDKHLIVIATDDEK-LNNKIRKHCDRLYKLYIDCSDYKKGLCIIPYQRSTKNFVFALNT 141 (223)
T ss_pred CCCcEEEECCCCHH-HHHHHHHHHHHcCCeEEEcCCcccCeEEeeeEEecCCEEEEEEC
Confidence 37899999999998 5554 44445557666654322222333333332 345554443
No 306
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=49.03 E-value=1.9 Score=31.13 Aligned_cols=14 Identities=21% Similarity=0.230 Sum_probs=11.3
Q ss_pred CCCcEEEEccCChH
Q 040104 15 TGIDVSFDCAGFNK 28 (105)
Q Consensus 15 ~g~d~vid~~g~~~ 28 (105)
.++|++|+++|...
T Consensus 221 ~~~D~Vi~AtG~~~ 234 (564)
T PRK12771 221 GEFDAVFVAIGAQL 234 (564)
T ss_pred hhCCEEEEeeCCCC
Confidence 36899999999864
No 307
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=48.61 E-value=60 Score=21.19 Aligned_cols=31 Identities=19% Similarity=0.392 Sum_probs=21.2
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEE
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCL 45 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~ 45 (105)
..+|+|++|++.....+.+..+++.|-.++.
T Consensus 60 ~~~DvVvi~a~~~~~~~~~~~al~~Gk~Vvv 90 (265)
T PRK13304 60 EDVDLVVECASVNAVEEVVPKSLENGKDVII 90 (265)
T ss_pred cCCCEEEEcCChHHHHHHHHHHHHcCCCEEE
Confidence 4689999999877655566667775443433
No 308
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=48.58 E-value=37 Score=21.28 Aligned_cols=44 Identities=20% Similarity=0.337 Sum_probs=28.2
Q ss_pred hHHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEE
Q 040104 3 AEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLV 46 (105)
Q Consensus 3 ~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 46 (105)
+...+.+......++|.+|-....+......++-++..|.-++.
T Consensus 42 ~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~ 85 (257)
T PF13407_consen 42 EEQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVT 85 (257)
T ss_dssp HHHHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEE
Confidence 34455566555568998886655554466777777777764444
No 309
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.37 E-value=18 Score=24.15 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=27.0
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 49 (105)
.+|++|-++|.+..+... ++++|..++.+|..
T Consensus 201 ~ADIVI~avg~~~~v~~~--~ik~GavVIDvgin 232 (284)
T PRK14179 201 KADILVVAIGRGHFVTKE--FVKEGAVVIDVGMN 232 (284)
T ss_pred hCCEEEEecCccccCCHH--HccCCcEEEEecce
Confidence 589999999999966654 49999999999864
No 310
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=48.35 E-value=51 Score=22.61 Aligned_cols=40 Identities=28% Similarity=0.302 Sum_probs=25.5
Q ss_pred HHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcC
Q 040104 7 EKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 7 ~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~ 48 (105)
+++-+..++..++.+| |+...=...++.|+-|.+.|.+|-
T Consensus 269 ~Evv~aV~~ri~V~lD--GGVR~G~DVlKALALGAk~VfiGR 308 (363)
T KOG0538|consen 269 PEVVKAVEGRIPVFLD--GGVRRGTDVLKALALGAKGVFIGR 308 (363)
T ss_pred HHHHHHhcCceEEEEe--cCcccchHHHHHHhcccceEEecC
Confidence 3444444566777777 333334567777888888888774
No 311
>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function.
Probab=48.10 E-value=67 Score=21.88 Aligned_cols=44 Identities=25% Similarity=0.281 Sum_probs=31.7
Q ss_pred HHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcC-CEEEEEcCCC
Q 040104 7 EKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGH 50 (105)
Q Consensus 7 ~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~ 50 (105)
++|..+....--+++|+.|+..+.....+.++.. -..+.+|..+
T Consensus 190 d~i~~l~~~~~~v~VDfaG~~~~~~~Lh~~l~d~l~~~~~VG~th 234 (314)
T PF11017_consen 190 DDIDSLDAPQPVVIVDFAGNGEVLAALHEHLGDNLVYSCLVGATH 234 (314)
T ss_pred hhhhhccCCCCEEEEECCCCHHHHHHHHHHHhhhhhEEEEEEccC
Confidence 3444443345668899999999888888888886 4577778643
No 312
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=47.83 E-value=43 Score=21.93 Aligned_cols=34 Identities=24% Similarity=0.158 Sum_probs=21.1
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCC
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 49 (105)
..+|+++|++.... .......+...|.-+++|.+
T Consensus 67 ~~~DvVIdfT~p~~-~~~~~~~al~~g~~vVigtt 100 (266)
T TIGR00036 67 TDPDVLIDFTTPEG-VLNHLKFALEHGVRLVVGTT 100 (266)
T ss_pred CCCCEEEECCChHH-HHHHHHHHHHCCCCEEEECC
Confidence 35899999996555 45555555555555555543
No 313
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=47.70 E-value=22 Score=21.02 Aligned_cols=33 Identities=12% Similarity=0.022 Sum_probs=26.5
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
.+|+++-++|.+..+. -+.+++|..++.+|...
T Consensus 71 ~ADIVvsAtg~~~~i~--~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 71 DADVVVVGSPKPEKVP--TEWIKPGATVINCSPTK 103 (140)
T ss_pred hCCEEEEecCCCCccC--HHHcCCCCEEEEcCCCc
Confidence 6899999999987444 56699999999888644
No 314
>PRK06128 oxidoreductase; Provisional
Probab=47.46 E-value=79 Score=20.70 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=22.3
Q ss_pred CCCcEEEEccCChH--------------------------HHHHHHHhhhcCCEEEEEcC
Q 040104 15 TGIDVSFDCAGFNK--------------------------TMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 15 ~g~d~vid~~g~~~--------------------------~~~~~~~~l~~~G~~v~~g~ 48 (105)
+++|++|.++|... ....++..++++|+++.++.
T Consensus 133 g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS 192 (300)
T PRK06128 133 GGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGS 192 (300)
T ss_pred CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECC
Confidence 37999999887420 12334445567889988865
No 315
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=47.40 E-value=47 Score=22.66 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=26.0
Q ss_pred HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcC
Q 040104 4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG 40 (105)
Q Consensus 4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~ 40 (105)
+.++++++..|..+++.+|+-+.-. ..+++++++.-
T Consensus 170 ~~v~~vRe~~G~~~~l~vDaN~~~~-~~~A~~~~~~l 205 (352)
T cd03328 170 DRVAAARRAIGPDAELFVDANGAYS-RKQALALARAF 205 (352)
T ss_pred HHHHHHHHHcCCCCeEEEECCCCCC-HHHHHHHHHHH
Confidence 3456777777778999999887665 66676666554
No 316
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=47.39 E-value=65 Score=21.34 Aligned_cols=47 Identities=13% Similarity=0.152 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCCCcEEEEcc------CC---hHHHHHHHHhhhcCCEEEEE-cCCC
Q 040104 4 EEVEKIDKAMGTGIDVSFDCA------GF---NKTMSTALSATRAGGKVCLV-GMGH 50 (105)
Q Consensus 4 ~~~~~~~~~~~~g~d~vid~~------g~---~~~~~~~~~~l~~~G~~v~~-g~~~ 50 (105)
|..+.+++.-+..+|++|.-. |. .+...+.+++|++||++.-+ |.+.
T Consensus 193 D~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg 249 (287)
T COG2521 193 DAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPG 249 (287)
T ss_pred cHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCC
Confidence 344555555455799988532 21 12366889999999999877 4443
No 317
>KOG3674 consensus FtsJ-like RNA methyltransferase [RNA processing and modification]
Probab=47.04 E-value=16 Score=26.64 Aligned_cols=29 Identities=38% Similarity=0.536 Sum_probs=23.4
Q ss_pred CcEEEEccCChH------------HHHHHHHhhhcCCEEEE
Q 040104 17 IDVSFDCAGFNK------------TMSTALSATRAGGKVCL 45 (105)
Q Consensus 17 ~d~vid~~g~~~------------~~~~~~~~l~~~G~~v~ 45 (105)
+|-.+||.|.|. .+..++..|+.||+++.
T Consensus 232 ADGS~dcqg~pgeqE~iVssL~~aEV~~AL~~L~~gG~fil 272 (696)
T KOG3674|consen 232 ADGSTDCQGKPGEQESIVSSLISAEVEVALKLLRRGGRFIL 272 (696)
T ss_pred cCCccccCCCCccHHHHHHHHHHHHHHHHHHHHhcCCeehH
Confidence 566789999863 26678999999999884
No 318
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=46.92 E-value=67 Score=19.73 Aligned_cols=32 Identities=9% Similarity=0.056 Sum_probs=22.8
Q ss_pred CCcEEEEccCC--------------hHHHHHHHHhhhcCCEEEEEc
Q 040104 16 GIDVSFDCAGF--------------NKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 16 g~d~vid~~g~--------------~~~~~~~~~~l~~~G~~v~~g 47 (105)
.+|.++-..+. +..+..+.++|++||++....
T Consensus 87 ~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 87 SLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred ceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 57777654433 245788999999999987763
No 319
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=45.98 E-value=89 Score=20.87 Aligned_cols=32 Identities=6% Similarity=-0.105 Sum_probs=17.0
Q ss_pred HHHHHHcCCCCcEEEEccCChHHHHHHHHhhh
Q 040104 7 EKIDKAMGTGIDVSFDCAGFNKTMSTALSATR 38 (105)
Q Consensus 7 ~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~ 38 (105)
++.++....|+|++.----.++.+.++.+.++
T Consensus 199 eea~ea~~~GaDiI~lDn~~~e~l~~~v~~l~ 230 (277)
T TIGR01334 199 EQALTVLQASPDILQLDKFTPQQLHHLHERLK 230 (277)
T ss_pred HHHHHHHHcCcCEEEECCCCHHHHHHHHHHHh
Confidence 34444444567765532333444677777764
No 320
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=45.95 E-value=24 Score=23.31 Aligned_cols=20 Identities=30% Similarity=0.607 Sum_probs=17.2
Q ss_pred HHHHHHHhhhcCCEEEEEcC
Q 040104 29 TMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 29 ~~~~~~~~l~~~G~~v~~g~ 48 (105)
.+..+.+.|+|||+++++-.
T Consensus 236 il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 236 MCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred HHHHHHHhcCCCCEEEEEEe
Confidence 57789999999999998853
No 321
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=45.94 E-value=42 Score=22.13 Aligned_cols=58 Identities=5% Similarity=-0.010 Sum_probs=34.7
Q ss_pred hHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeeccCCCHHHHHHHHHcCCC
Q 040104 27 NKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKI 89 (105)
Q Consensus 27 ~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~g~i 89 (105)
....+...++|..|.|++.+-+..++.. +-.+...++.++.. .-.|+++++.|.+..+
T Consensus 29 ~ss~e~y~~aL~~GcRcvElD~Wdg~~~-~~eP~V~HG~tlts----~i~f~~v~~aIk~~AF 86 (257)
T cd08591 29 KSSVEMYRQVLLSGCRCIELDCWDGKGE-DEEPIITHGKTMCT----EILFKDVIEAIAETAF 86 (257)
T ss_pred cccHHHHHHHHHhCCcEEEEEeecCCCC-CCCCEEeeCCCCcc----CeEHHHHHHHHHHHhc
Confidence 3448899999999999999987654321 12233333333321 3455666666665444
No 322
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=45.60 E-value=46 Score=22.48 Aligned_cols=32 Identities=16% Similarity=0.221 Sum_probs=23.2
Q ss_pred CCCcEEEEcc-----CC-hHHHHHHHHhhhcCCEEEEE
Q 040104 15 TGIDVSFDCA-----GF-NKTMSTALSATRAGGKVCLV 46 (105)
Q Consensus 15 ~g~d~vid~~-----g~-~~~~~~~~~~l~~~G~~v~~ 46 (105)
+.+|+|+-.. .+ ...+....+.|++||.++.-
T Consensus 188 ~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 188 KAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred CCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 4688887531 12 23588999999999999864
No 323
>PTZ00146 fibrillarin; Provisional
Probab=45.46 E-value=45 Score=22.45 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=21.8
Q ss_pred CCcEEEEccCChH----HHHHHHHhhhcCCEEEEE
Q 040104 16 GIDVSFDCAGFNK----TMSTALSATRAGGKVCLV 46 (105)
Q Consensus 16 g~d~vid~~g~~~----~~~~~~~~l~~~G~~v~~ 46 (105)
.+|+||-.+..+. ...++...|+++|.+++.
T Consensus 202 ~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 202 MVDVIFADVAQPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEE
Confidence 5898886544433 234677799999999983
No 324
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=45.45 E-value=75 Score=20.46 Aligned_cols=28 Identities=14% Similarity=0.115 Sum_probs=19.5
Q ss_pred CCCCcEEEEccCChHHHHHHHHhhhcCC
Q 040104 14 GTGIDVSFDCAGFNKTMSTALSATRAGG 41 (105)
Q Consensus 14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G 41 (105)
...+|+||||+.+...-....+.++..+
T Consensus 100 ~~~~D~VvdaiD~~~~k~~L~~~c~~~~ 127 (231)
T cd00755 100 GGDPDFVVDAIDSIRAKVALIAYCRKRK 127 (231)
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHHHhC
Confidence 3469999999998775444555555555
No 325
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.33 E-value=90 Score=20.76 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=13.1
Q ss_pred cEEEEccCChHHHHHHHHhhhcCCEEEEEc
Q 040104 18 DVSFDCAGFNKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 18 d~vid~~g~~~~~~~~~~~l~~~G~~v~~g 47 (105)
.+.+++.|+-. .++.-++.+-|--++++|
T Consensus 229 ~~~ieAsGgIt-~~ni~~ya~~GvD~IsvG 257 (273)
T PRK05848 229 HVLLEASGNIT-LENINAYAKSGVDAISSG 257 (273)
T ss_pred CeEEEEECCCC-HHHHHHHHHcCCCEEEeC
Confidence 34444444443 444444444444444444
No 326
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=45.28 E-value=49 Score=23.50 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=30.8
Q ss_pred ChhHHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEE
Q 040104 1 DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLV 46 (105)
Q Consensus 1 ~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 46 (105)
+.+++.+.+.+....|+|++--..|- ..+.+..++..+|+.-+
T Consensus 141 t~d~~~~~ie~qa~~GVDfmTiHcGi---~~~~~~~~~~~~R~~gi 183 (431)
T PRK13352 141 TEDDLFDVIEKQAKDGVDFMTIHCGV---TRETLERLKKSGRIMGI 183 (431)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEccch---hHHHHHHHHhcCCccCe
Confidence 35677788888887799988777774 35677777776765543
No 327
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=45.25 E-value=83 Score=22.18 Aligned_cols=33 Identities=21% Similarity=0.148 Sum_probs=20.6
Q ss_pred HHHHHHHcCCCCcEEEEccCChHHHHHHHHhhh
Q 040104 6 VEKIDKAMGTGIDVSFDCAGFNKTMSTALSATR 38 (105)
Q Consensus 6 ~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~ 38 (105)
.+++.+..++.+|.||-|+|+...+.-.+..+.
T Consensus 220 ~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~ 252 (402)
T PRK13028 220 REQFLEMTGRLPDAVVACVGGGSNAIGLFSAFL 252 (402)
T ss_pred HHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHH
Confidence 344444345569999999988765554444444
No 328
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=45.16 E-value=54 Score=21.55 Aligned_cols=31 Identities=16% Similarity=0.139 Sum_probs=23.3
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEE
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLV 46 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 46 (105)
.+|+|++|++...+.+....+|+.|-.++..
T Consensus 67 ~~D~Vvi~tp~~~h~e~~~~aL~aGk~Vi~~ 97 (271)
T PRK13302 67 HADIVVEAAPASVLRAIVEPVLAAGKKAIVL 97 (271)
T ss_pred CCCEEEECCCcHHHHHHHHHHHHcCCcEEEe
Confidence 5899999999887666677788776655543
No 329
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=45.15 E-value=48 Score=22.72 Aligned_cols=36 Identities=25% Similarity=0.352 Sum_probs=26.7
Q ss_pred HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcC
Q 040104 4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG 40 (105)
Q Consensus 4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~ 40 (105)
+.++++++..|..+++.+|+-+.-+ .+.+++.++.-
T Consensus 176 ~~v~avRe~~g~~~~l~iDan~~~~-~~~A~~~~~~l 211 (372)
T COG4948 176 ERVRALREAVGDDVRLMVDANGGWT-LEEAIRLARAL 211 (372)
T ss_pred HHHHHHHHHhCCCceEEEeCCCCcC-HHHHHHHHHHh
Confidence 4567788888889999999999877 56555555444
No 330
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=45.15 E-value=41 Score=16.82 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=15.9
Q ss_pred HHHHHHHHhhhcCCEEEEEc
Q 040104 28 KTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 28 ~~~~~~~~~l~~~G~~v~~g 47 (105)
..++...+.+..||++++++
T Consensus 51 ~~~~~l~~~v~~G~~lvl~a 70 (70)
T PF14258_consen 51 EEAEALLEWVEAGNTLVLAA 70 (70)
T ss_pred HHHHHHHHHHHcCCEEEEeC
Confidence 34678888899999998863
No 331
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=45.11 E-value=64 Score=22.83 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=17.4
Q ss_pred HHHHHHHhhhcCCEEEEEcCC
Q 040104 29 TMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 29 ~~~~~~~~l~~~G~~v~~g~~ 49 (105)
.+..+.++|++||+++...++
T Consensus 359 iL~~a~~~lkpgG~lvystcs 379 (445)
T PRK14904 359 LLDHAASLLKPGGVLVYATCS 379 (445)
T ss_pred HHHHHHHhcCCCcEEEEEeCC
Confidence 477889999999999987653
No 332
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=44.96 E-value=52 Score=23.33 Aligned_cols=42 Identities=17% Similarity=0.257 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEE
Q 040104 2 IAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLV 46 (105)
Q Consensus 2 ~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 46 (105)
.+++.+.+.+....|+|++--..|- ..+.++.++..||+.-+
T Consensus 139 ~d~~~~~ie~qa~dGVDfmTiH~Gi---~~~~~~~~~~~~R~~gi 180 (423)
T TIGR00190 139 EDDMFRAIEKQAKDGVDFMTIHAGV---LLEYVERLKRSGRITGI 180 (423)
T ss_pred HHHHHHHHHHHHHhCCCEEEEccch---hHHHHHHHHhCCCccCe
Confidence 5677788888887799988777773 45677777777775544
No 333
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=44.72 E-value=92 Score=21.72 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=26.2
Q ss_pred CCCcEE-EEccCCh-HHHHHHHHhhhcCCEEEEEc
Q 040104 15 TGIDVS-FDCAGFN-KTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 15 ~g~d~v-id~~g~~-~~~~~~~~~l~~~G~~v~~g 47 (105)
+.+|+| +|.-|.+ .-+..+++.++++|.+.+..
T Consensus 113 ~~fDvIdlDPfGs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 113 RKFHVIDIDPFGTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred CCCCEEEeCCCCCcHHHHHHHHHhcccCCEEEEEe
Confidence 468977 6887774 34778999999999988874
No 334
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=44.60 E-value=38 Score=22.66 Aligned_cols=75 Identities=21% Similarity=0.365 Sum_probs=33.5
Q ss_pred HHHHHHHHHc-CCCCcEEE-EccCC-----------hHHHHHHHHhhhcCCEEEEEcCCCCCccccc-hh---hhhcCeE
Q 040104 4 EEVEKIDKAM-GTGIDVSF-DCAGF-----------NKTMSTALSATRAGGKVCLVGMGHHEMTVPL-TP---AAAREVD 66 (105)
Q Consensus 4 ~~~~~~~~~~-~~g~d~vi-d~~g~-----------~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~-~~---~~~~~~~ 66 (105)
|+.+.+++.- ++.+|+|| |...- ...+..++++++++|.++...++.. .+.+. .. -...+++
T Consensus 182 Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~-i~~~~l~~~~~~~a~~~~ 260 (286)
T PF10672_consen 182 DVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHH-ISPDFLLEAVAEAAREVE 260 (286)
T ss_dssp -HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TT-S-HHHHHHHHHHHHHHCE
T ss_pred CHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcc-cCHHHHHHHHHHhCccce
Confidence 4445555433 45899766 53211 1256779999999999887765432 22111 11 1234555
Q ss_pred EEEeeccCCCHHH
Q 040104 67 VVGVFRYKNTWPL 79 (105)
Q Consensus 67 i~~~~~~~~~~~~ 79 (105)
+..-...++++++
T Consensus 261 ~~~~~~~p~df~~ 273 (286)
T PF10672_consen 261 FIERLGQPPDFPD 273 (286)
T ss_dssp EEEEEE-------
T ss_pred Eeeeecccccccc
Confidence 5544444566655
No 335
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=44.57 E-value=68 Score=21.92 Aligned_cols=25 Identities=8% Similarity=0.149 Sum_probs=19.8
Q ss_pred CCcEEEEccC----ChHHHHHHHHhhhcC
Q 040104 16 GIDVSFDCAG----FNKTMSTALSATRAG 40 (105)
Q Consensus 16 g~d~vid~~g----~~~~~~~~~~~l~~~ 40 (105)
.+-++||+++ ++.+++.+++.++..
T Consensus 124 d~PL~Id~s~n~~kD~evleaale~~~g~ 152 (319)
T PRK04452 124 DVPLIIGGSGNPEKDAEVLEKVAEAAEGE 152 (319)
T ss_pred CCCEEEecCCCCCCCHHHHHHHHHHhCCC
Confidence 5678899888 677888888888754
No 336
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=44.43 E-value=27 Score=22.68 Aligned_cols=34 Identities=9% Similarity=0.157 Sum_probs=24.0
Q ss_pred CCCcEEEEc--c---C---ChHHHHHHHHhhhcCCEEEEEcC
Q 040104 15 TGIDVSFDC--A---G---FNKTMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 15 ~g~d~vid~--~---g---~~~~~~~~~~~l~~~G~~v~~g~ 48 (105)
+.+|+|+-. . + ....+..+.++|+|||++++...
T Consensus 116 ~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 116 NTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 357887752 1 1 12357888999999999998754
No 337
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=44.19 E-value=59 Score=20.70 Aligned_cols=34 Identities=15% Similarity=0.330 Sum_probs=24.4
Q ss_pred CCCcEEEEccC-----C-hHHHHHHHHhhhcCCEEEEEcC
Q 040104 15 TGIDVSFDCAG-----F-NKTMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 15 ~g~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 48 (105)
+.+|+|+-... . ...+.++.++|+++|.++....
T Consensus 102 ~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 102 ATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred CcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 35888876422 1 2358889999999999997743
No 338
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=44.15 E-value=1.4e+02 Score=22.68 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=16.5
Q ss_pred HHHHHHHhhhcCCEEEEEcCC
Q 040104 29 TMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 29 ~~~~~~~~l~~~G~~v~~g~~ 49 (105)
.+..+.++|+++|.++....+
T Consensus 638 l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 638 LIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred HHHHHHHHcCCCCEEEEEeCC
Confidence 466789999999998776543
No 339
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=43.96 E-value=75 Score=22.37 Aligned_cols=70 Identities=21% Similarity=0.227 Sum_probs=40.2
Q ss_pred CCCCcEEEEccCChHH-HHHHHHhhhcCCEEEEEcCCCCCccccchhhhhc-----CeEEEEeecc-CCCHHHHHHHHHc
Q 040104 14 GTGIDVSFDCAGFNKT-MSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAR-----EVDVVGVFRY-KNTWPLCLEFLRS 86 (105)
Q Consensus 14 ~~g~d~vid~~g~~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~-----~~~i~~~~~~-~~~~~~~~~~v~~ 86 (105)
...+|+|||++|.|.. ..-++..+..+-.+|.+.+- ..+.+.+++.+ ++...++... +...-++.+|...
T Consensus 99 ~~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMmNVE---aDvtIGp~Lk~~Ad~~GviyS~~~GDeP~~~mEL~efa~a 175 (438)
T COG4091 99 NDLIDVIIDATGVPEVGAKIALEAILHGKHLVMMNVE---ADVTIGPILKQQADAAGVIYSGGAGDEPSSCMELYEFASA 175 (438)
T ss_pred CCcceEEEEcCCCcchhhHhHHHHHhcCCeEEEEEee---eceeecHHHHHHHhhcCeEEeccCCCCcHHHHHHHHHHHh
Confidence 4579999999999872 34577777777777776431 22334443322 2222222222 4445566666665
No 340
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=43.90 E-value=19 Score=21.79 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=22.1
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCC
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 49 (105)
..+|++|-++|.+..+. -+.++++..++.+|..
T Consensus 78 ~~ADIVVsa~G~~~~i~--~~~ik~gavVIDvG~~ 110 (160)
T PF02882_consen 78 RRADIVVSAVGKPNLIK--ADWIKPGAVVIDVGIN 110 (160)
T ss_dssp TTSSEEEE-SSSTT-B---GGGS-TTEEEEE--CE
T ss_pred eeccEEeeeeccccccc--cccccCCcEEEecCCc
Confidence 36899999999998443 4478999999999863
No 341
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=43.81 E-value=55 Score=20.31 Aligned_cols=33 Identities=12% Similarity=0.298 Sum_probs=23.0
Q ss_pred CCcEEEEcc-----C-ChHHHHHHHHhhhcCCEEEEEcC
Q 040104 16 GIDVSFDCA-----G-FNKTMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 16 g~d~vid~~-----g-~~~~~~~~~~~l~~~G~~v~~g~ 48 (105)
.+|+|+-.- . -...+..+..+|+++|+++.+..
T Consensus 121 ~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 121 SFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred CccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 577776421 1 12357788999999999988754
No 342
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=43.67 E-value=41 Score=22.29 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=22.3
Q ss_pred CCCcEEEEccCChHH---HHHHHHhhhcCCEEEEEcC
Q 040104 15 TGIDVSFDCAGFNKT---MSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 15 ~g~d~vid~~g~~~~---~~~~~~~l~~~G~~v~~g~ 48 (105)
...|+||.|++.... +......++++..++.+|.
T Consensus 65 ~~aDvViiavp~~~~~~v~~~l~~~l~~~~iv~dvgs 101 (307)
T PRK07502 65 KGADLVILCVPVGASGAVAAEIAPHLKPGAIVTDVGS 101 (307)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHhhCCCCCEEEeCcc
Confidence 368999999987542 2333345667777777764
No 343
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=43.50 E-value=28 Score=22.39 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=25.6
Q ss_pred CCCcEEEEcc---CC--hHHHHHHHHhhhcCCEEEEEcCC
Q 040104 15 TGIDVSFDCA---GF--NKTMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 15 ~g~d~vid~~---g~--~~~~~~~~~~l~~~G~~v~~g~~ 49 (105)
+.+|++|-|. |. +.-+.++.++|+++|.+.+.-+.
T Consensus 121 ~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~ 160 (219)
T PF05148_consen 121 ESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVK 160 (219)
T ss_dssp T-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred CceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEec
Confidence 4689888874 22 23478999999999999887543
No 344
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=43.42 E-value=1e+02 Score=20.86 Aligned_cols=79 Identities=18% Similarity=0.139 Sum_probs=44.2
Q ss_pred HHHHHHHHHc--C--CCCcEEEEccCChH----HHHHHHHhhhcCC-EEEEEcCCC--CCc--cccchhhhhcCeEEEEe
Q 040104 4 EEVEKIDKAM--G--TGIDVSFDCAGFNK----TMSTALSATRAGG-KVCLVGMGH--HEM--TVPLTPAAAREVDVVGV 70 (105)
Q Consensus 4 ~~~~~~~~~~--~--~g~d~vid~~g~~~----~~~~~~~~l~~~G-~~v~~g~~~--~~~--~~~~~~~~~~~~~i~~~ 70 (105)
+..+.++++. + +++.+.||+.|+.. .+...++-++.-+ .++.++... +.. ...-..++...-++.|+
T Consensus 84 ~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~PV~v~v~~~AASGGY~IA~aAd~I~a~p~si~GS 163 (317)
T COG0616 84 DIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKKPVVVSVGGYAASGGYYIALAADKIVADPSSITGS 163 (317)
T ss_pred HHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHHHHhhcCCEEEEECCeecchhhhhhccCCEEEecCCceeee
Confidence 4445555554 2 47889999988854 2445555566665 566665422 221 22333455666678887
Q ss_pred ecc---CCCHHHHHH
Q 040104 71 FRY---KNTWPLCLE 82 (105)
Q Consensus 71 ~~~---~~~~~~~~~ 82 (105)
... ...+.++++
T Consensus 164 IGVi~~~~~~~~l~~ 178 (317)
T COG0616 164 IGVISGAPNFEELLE 178 (317)
T ss_pred ceeEEecCCHHHHHH
Confidence 654 444554443
No 345
>PRK10637 cysG siroheme synthase; Provisional
Probab=43.36 E-value=1.2e+02 Score=21.64 Aligned_cols=57 Identities=9% Similarity=-0.044 Sum_probs=34.9
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhh-hcCeEEEEee
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAA-AREVDVVGVF 71 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~i~~~~ 71 (105)
.++++||-|++++..-......++..|.++.+.-.+..-.|.+.... ...+++.-+.
T Consensus 71 ~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN~~d~~~~~~f~~pa~~~~g~l~iaisT 128 (457)
T PRK10637 71 DTCWLAIAATDDDAVNQRVSEAAEARRIFCNVVDAPKAASFIMPSIIDRSPLMVAVSS 128 (457)
T ss_pred CCCEEEEECCCCHHHhHHHHHHHHHcCcEEEECCCcccCeEEEeeEEecCCEEEEEEC
Confidence 37899999999998444566666677998887643332233333332 2345554443
No 346
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=43.16 E-value=46 Score=20.25 Aligned_cols=32 Identities=9% Similarity=0.072 Sum_probs=19.7
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcC-CEEEEEc
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAG-GKVCLVG 47 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g 47 (105)
++|+||||+.+...-....+.+... +.-.+.+
T Consensus 88 ~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~ 120 (174)
T cd01487 88 DCDIVVEAFDNAETKAMLAESLLGNKNKPVVCA 120 (174)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 6999999988877433333443333 5555544
No 347
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=43.14 E-value=34 Score=20.61 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=13.8
Q ss_pred HHHHHHhhhcCCEEEEEc
Q 040104 30 MSTALSATRAGGKVCLVG 47 (105)
Q Consensus 30 ~~~~~~~l~~~G~~v~~g 47 (105)
+..++..|++||.++.--
T Consensus 122 l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 122 LLLALELLKPGGTFVIKV 139 (181)
T ss_dssp HHHHHHHHCTTEEEEEEE
T ss_pred HHHHHhhhcCCCEEEEEe
Confidence 556778899999877643
No 348
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=43.05 E-value=46 Score=22.57 Aligned_cols=33 Identities=12% Similarity=0.066 Sum_probs=23.9
Q ss_pred CCCcEEEEc-----cCCh-HHHHHHHHhhhcCCEEEEEc
Q 040104 15 TGIDVSFDC-----AGFN-KTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 15 ~g~d~vid~-----~g~~-~~~~~~~~~l~~~G~~v~~g 47 (105)
+.+|+|+-. +.++ ..+....++|+|||.+++.-
T Consensus 197 ~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 197 RKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred CCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 468988742 3332 35778899999999998764
No 349
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=42.74 E-value=28 Score=20.99 Aligned_cols=18 Identities=22% Similarity=0.436 Sum_probs=15.4
Q ss_pred HHHHHHhhhcCCEEEEEc
Q 040104 30 MSTALSATRAGGKVCLVG 47 (105)
Q Consensus 30 ~~~~~~~l~~~G~~v~~g 47 (105)
+..+.++|+++|+++.+.
T Consensus 123 l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 123 LDELPEILKEGGRVQLIQ 140 (179)
T ss_pred HHhHHHhhCCCCEEEEEE
Confidence 667789999999998875
No 350
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.57 E-value=26 Score=23.46 Aligned_cols=33 Identities=15% Similarity=0.277 Sum_probs=27.6
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCC
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 49 (105)
..+|++|-++|.+..+ --+++++|..++.+|..
T Consensus 206 ~~ADIvv~AvG~p~~i--~~~~vk~gavVIDvGin 238 (287)
T PRK14176 206 LDADILVVATGVKHLI--KADMVKEGAVIFDVGIT 238 (287)
T ss_pred hhCCEEEEccCCcccc--CHHHcCCCcEEEEeccc
Confidence 3689999999999854 35599999999999974
No 351
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=42.43 E-value=49 Score=20.61 Aligned_cols=30 Identities=23% Similarity=0.195 Sum_probs=19.4
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEE
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVC 44 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v 44 (105)
.++|+||+|+.+...-...-+.++..+.-.
T Consensus 110 ~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~ 139 (202)
T TIGR02356 110 NNVDLVLDCTDNFATRYLINDACVALGTPL 139 (202)
T ss_pred hCCCEEEECCCCHHHHHHHHHHHHHcCCCE
Confidence 368999999988774444444555555433
No 352
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.42 E-value=25 Score=23.61 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=27.4
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 49 (105)
.+|++|-++|.+..+. -+++++|..++.+|..
T Consensus 204 ~ADIvIsAvGkp~~i~--~~~vk~gavVIDvGin 235 (293)
T PRK14185 204 EADIIIAALGQPEFVK--ADMVKEGAVVIDVGTT 235 (293)
T ss_pred hCCEEEEccCCcCccC--HHHcCCCCEEEEecCc
Confidence 5899999999999443 4899999999999964
No 353
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=42.11 E-value=91 Score=19.90 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=11.4
Q ss_pred HHHhhhcCCEEEEEcC
Q 040104 33 ALSATRAGGKVCLVGM 48 (105)
Q Consensus 33 ~~~~l~~~G~~v~~g~ 48 (105)
.+..++++|+|+.++.
T Consensus 133 ~~~~~~~~g~Iv~isS 148 (257)
T PRK08594 133 AKKLMTEGGSIVTLTY 148 (257)
T ss_pred HHHhcccCceEEEEcc
Confidence 4445567899998875
No 354
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=41.89 E-value=16 Score=24.02 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=18.1
Q ss_pred HHHHHHHhhhcCCEEEEEcCCC
Q 040104 29 TMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 29 ~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
++.....+|+|||.++..|...
T Consensus 181 al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 181 ALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp HHHHHHTTEEEEEEEEEEEESS
T ss_pred HHHHHHHHcCCCcEEEEEEEcC
Confidence 4677788899999999998644
No 355
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=41.86 E-value=73 Score=22.39 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=25.2
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEE
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCL 45 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~ 45 (105)
..+|+|+.++++...+...+.+++.|-++..
T Consensus 90 ~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaL 120 (385)
T PRK05447 90 PEADVVVAAIVGAAGLLPTLAAIRAGKRIAL 120 (385)
T ss_pred CCCCEEEEeCcCcccHHHHHHHHHCCCcEEE
Confidence 3699999998887778889999988766554
No 356
>PRK08328 hypothetical protein; Provisional
Probab=41.62 E-value=49 Score=21.16 Aligned_cols=14 Identities=43% Similarity=0.684 Sum_probs=12.0
Q ss_pred CCcEEEEccCChHH
Q 040104 16 GIDVSFDCAGFNKT 29 (105)
Q Consensus 16 g~d~vid~~g~~~~ 29 (105)
++|+||||+.+..+
T Consensus 118 ~~D~Vid~~d~~~~ 131 (231)
T PRK08328 118 GVDVIVDCLDNFET 131 (231)
T ss_pred cCCEEEECCCCHHH
Confidence 68999999998763
No 357
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=41.54 E-value=55 Score=21.06 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=23.8
Q ss_pred CCcEEEEccCC----hH----HHHHHHHhhhcCCEEEEEcC
Q 040104 16 GIDVSFDCAGF----NK----TMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 16 g~d~vid~~g~----~~----~~~~~~~~l~~~G~~v~~g~ 48 (105)
.+|.|+|.+-- +. -+.....+|+++|+++.+..
T Consensus 124 ~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 124 VFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred CcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 68999995332 11 25567788999999998865
No 358
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=41.49 E-value=1.2e+02 Score=21.44 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEE
Q 040104 2 IAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLV 46 (105)
Q Consensus 2 ~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 46 (105)
.+++...+.+....|+|+.--.+|. ....+..++..||+.-+
T Consensus 140 ~d~~~~~v~~qa~~GVdfmTIHaGV---~~~~~~~~~~~~R~~gi 181 (432)
T COG0422 140 EDDFFDTVEKQAEQGVDFMTIHAGV---LLEYVPRTKRSGRVTGI 181 (432)
T ss_pred HHHHHHHHHHHHHhCCcEEEeehhh---hHHHHHHHHhcCceeee
Confidence 3556677777777799988776773 56778888888876644
No 359
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=41.42 E-value=86 Score=22.57 Aligned_cols=36 Identities=25% Similarity=0.235 Sum_probs=26.5
Q ss_pred hHHHHHHHHHcC-CCCcEEEEccCChHHHHHHHHhhh
Q 040104 3 AEEVEKIDKAMG-TGIDVSFDCAGFNKTMSTALSATR 38 (105)
Q Consensus 3 ~~~~~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l~ 38 (105)
.++.+++-++++ ++.|.||=+.++.++.+.++++..
T Consensus 90 ~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma~ 126 (449)
T COG0161 90 IELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMAL 126 (449)
T ss_pred HHHHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHHH
Confidence 456788888887 559998887666665787777763
No 360
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.05 E-value=31 Score=22.98 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=26.3
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCC
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 49 (105)
.++|++|.++|.+..+. .+.++++..++.+|..
T Consensus 201 ~~aDIvI~AtG~~~~v~--~~~lk~gavViDvg~n 233 (283)
T PRK14192 201 KQADIIVGAVGKPELIK--KDWIKQGAVVVDAGFH 233 (283)
T ss_pred ccCCEEEEccCCCCcCC--HHHcCCCCEEEEEEEe
Confidence 37999999999887433 3668999999999864
No 361
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=40.87 E-value=90 Score=20.69 Aligned_cols=28 Identities=11% Similarity=0.169 Sum_probs=18.8
Q ss_pred CCCCcEEEEccCChHHHHHHHHhhhcCC
Q 040104 14 GTGIDVSFDCAGFNKTMSTALSATRAGG 41 (105)
Q Consensus 14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G 41 (105)
..++|+||||++....-....+.++..+
T Consensus 119 ~~~~D~VIdaiD~~~~k~~L~~~c~~~~ 146 (268)
T PRK15116 119 SAGFSYVIDAIDSVRPKAALIAYCRRNK 146 (268)
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHHHcC
Confidence 3469999999998664444555555554
No 362
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=40.80 E-value=94 Score=20.31 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=22.9
Q ss_pred CCCcEEE-Ecc--CChHHHHHHHHhhhcCCEEEEEc
Q 040104 15 TGIDVSF-DCA--GFNKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 15 ~g~d~vi-d~~--g~~~~~~~~~~~l~~~G~~v~~g 47 (105)
+.+|.+| |+= --..-++.+++++|+||.++.=-
T Consensus 148 ~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 148 GTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred CceeEEEEccchHHHHHHHHHHHhhcccccEEEEec
Confidence 4688776 431 11124889999999999998654
No 363
>PRK05993 short chain dehydrogenase; Provisional
Probab=40.78 E-value=98 Score=19.91 Aligned_cols=19 Identities=16% Similarity=0.400 Sum_probs=12.5
Q ss_pred HHHHHcCCCCcEEEEccCC
Q 040104 8 KIDKAMGTGIDVSFDCAGF 26 (105)
Q Consensus 8 ~~~~~~~~g~d~vid~~g~ 26 (105)
.+.+..++.+|++|.+.|.
T Consensus 68 ~~~~~~~g~id~li~~Ag~ 86 (277)
T PRK05993 68 QVLELSGGRLDALFNNGAY 86 (277)
T ss_pred HHHHHcCCCccEEEECCCc
Confidence 3333344579999998764
No 364
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=40.73 E-value=66 Score=21.81 Aligned_cols=35 Identities=29% Similarity=0.374 Sum_probs=25.2
Q ss_pred HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcC
Q 040104 5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG 40 (105)
Q Consensus 5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~ 40 (105)
.++++++..|..+++.+|+-+.-. ...+.++++.-
T Consensus 160 ~v~avr~~~g~~~~l~vDan~~~~-~~~A~~~~~~l 194 (341)
T cd03327 160 LVRAIREAVGYDVDLMLDCYMSWN-LNYAIKMARAL 194 (341)
T ss_pred HHHHHHHHhCCCCcEEEECCCCCC-HHHHHHHHHHh
Confidence 456677777778999999877665 66677666554
No 365
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.32 E-value=27 Score=23.35 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=27.7
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCC
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 49 (105)
+.+|++|-++|.+..+. -+++++|..++.+|..
T Consensus 200 k~ADIvIsAvGkp~~i~--~~~vk~gavVIDvGin 232 (282)
T PRK14180 200 TKADILIVAVGKPNFIT--ADMVKEGAVVIDVGIN 232 (282)
T ss_pred hhcCEEEEccCCcCcCC--HHHcCCCcEEEEeccc
Confidence 36899999999998433 4889999999999964
No 366
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=40.00 E-value=1.2e+02 Score=20.50 Aligned_cols=37 Identities=19% Similarity=0.091 Sum_probs=22.0
Q ss_pred hHHHHHHHHHc-CCCCcEEEEccCChH-HHHHHHHhhhc
Q 040104 3 AEEVEKIDKAM-GTGIDVSFDCAGFNK-TMSTALSATRA 39 (105)
Q Consensus 3 ~~~~~~~~~~~-~~g~d~vid~~g~~~-~~~~~~~~l~~ 39 (105)
+.+.+.+++.. +..+|+++++.|+.. +..+..++++.
T Consensus 78 e~v~raI~~~~~~~~IdLii~TpGG~v~AA~~I~~~l~~ 116 (285)
T PF01972_consen 78 EFVLRAIREAPKDKPIDLIIHTPGGLVDAAEQIARALRE 116 (285)
T ss_pred HHHHHHHHhcCCCCceEEEEECCCCcHHHHHHHHHHHHh
Confidence 34555666544 357999999988843 23334444443
No 367
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=39.93 E-value=61 Score=22.61 Aligned_cols=36 Identities=11% Similarity=0.039 Sum_probs=27.3
Q ss_pred HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcC
Q 040104 4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG 40 (105)
Q Consensus 4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~ 40 (105)
+.++++++..|..+++.+|+-+.-. .+++.+.++.-
T Consensus 194 ~~v~avre~~G~~~~l~vDaN~~w~-~~~A~~~~~~l 229 (404)
T PRK15072 194 KLFEAVRNKFGFDLHLLHDVHHRLT-PIEAARLGKSL 229 (404)
T ss_pred HHHHHHHhhhCCCceEEEECCCCCC-HHHHHHHHHhc
Confidence 3567777777778999999987766 77777776654
No 368
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.92 E-value=27 Score=23.53 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=27.2
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 49 (105)
.+|++|-++|.+..+. -+++++|..++.+|..
T Consensus 204 ~ADIvIsAvGkp~~i~--~~~ik~gaiVIDvGin 235 (297)
T PRK14167 204 RADIVVAAAGVPELID--GSMLSEGATVIDVGIN 235 (297)
T ss_pred hCCEEEEccCCcCccC--HHHcCCCCEEEEcccc
Confidence 5899999999998444 3889999999999964
No 369
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=39.80 E-value=1.4e+02 Score=21.29 Aligned_cols=30 Identities=3% Similarity=0.070 Sum_probs=15.1
Q ss_pred hcCeEEEEeecc----CCCHHHHHHHHHcCCCCC
Q 040104 62 AREVDVVGVFRY----KNTWPLCLEFLRSGKIDI 91 (105)
Q Consensus 62 ~~~~~i~~~~~~----~~~~~~~~~~v~~g~i~~ 91 (105)
++.+.+.|.... ...+..+++++.+.++++
T Consensus 335 f~~~~i~~~I~TKlDET~s~G~~~s~~~e~~~PV 368 (407)
T COG1419 335 FSLFPIDGLIFTKLDETTSLGNLFSLMYETRLPV 368 (407)
T ss_pred hccCCcceeEEEcccccCchhHHHHHHHHhCCCe
Confidence 344444444433 345566666666655543
No 370
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=39.73 E-value=15 Score=19.54 Aligned_cols=29 Identities=10% Similarity=0.170 Sum_probs=15.4
Q ss_pred CCCcEEEEccC-----C-hHHHHHHHHhhhcCCEE
Q 040104 15 TGIDVSFDCAG-----F-NKTMSTALSATRAGGKV 43 (105)
Q Consensus 15 ~g~d~vid~~g-----~-~~~~~~~~~~l~~~G~~ 43 (105)
+.+|+|+-..- . ...+....++|+|||++
T Consensus 65 ~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 65 ESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred cccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 37888875311 1 22477888899999975
No 371
>PRK03612 spermidine synthase; Provisional
Probab=38.90 E-value=1e+02 Score=22.46 Aligned_cols=34 Identities=9% Similarity=-0.076 Sum_probs=23.9
Q ss_pred CCCCcEEEEccCCh-----------HHHHHHHHhhhcCCEEEEEc
Q 040104 14 GTGIDVSFDCAGFN-----------KTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 14 ~~g~d~vid~~g~~-----------~~~~~~~~~l~~~G~~v~~g 47 (105)
.+.+|+|+--...+ +.++.+.+.|+++|+++.-.
T Consensus 371 ~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 371 AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 45899887433221 23678899999999998764
No 372
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=38.88 E-value=70 Score=21.92 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=24.8
Q ss_pred HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcC
Q 040104 5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG 40 (105)
Q Consensus 5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~ 40 (105)
.++++++..|..+.+.+|+-++-. .+++.+.++.-
T Consensus 178 ~i~~vR~~~G~~~~l~vDan~~~~-~~~A~~~~~~l 212 (368)
T cd03329 178 ACLAVREAVGPDMRLMHDGAHWYS-RADALRLGRAL 212 (368)
T ss_pred HHHHHHHHhCCCCeEEEECCCCcC-HHHHHHHHHHh
Confidence 456777777777888999877765 67776665553
No 373
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=38.84 E-value=1.4e+02 Score=21.34 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=22.0
Q ss_pred CCCCc-EEEEccCCh----HH---HHHHHHhhhcCCEEEEEcC
Q 040104 14 GTGID-VSFDCAGFN----KT---MSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 14 ~~g~d-~vid~~g~~----~~---~~~~~~~l~~~G~~v~~g~ 48 (105)
..++| ++||+.|.. .. +......+.+.+++.++-.
T Consensus 180 ~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda 222 (428)
T TIGR00959 180 ENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDA 222 (428)
T ss_pred hcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEec
Confidence 45788 667999853 22 3334556678888777643
No 374
>PLN02775 Probable dihydrodipicolinate reductase
Probab=38.78 E-value=99 Score=20.80 Aligned_cols=42 Identities=7% Similarity=0.033 Sum_probs=28.7
Q ss_pred HHHHHcCCCCc-EEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104 8 KIDKAMGTGID-VSFDCAGFNKTMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 8 ~~~~~~~~g~d-~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
.+.+...+.+| ++||.+- |......++.+...|.-+++|...
T Consensus 71 ~l~~~~~~~~~~VvIDFT~-P~a~~~~~~~~~~~g~~~VvGTTG 113 (286)
T PLN02775 71 VLSSVKAEYPNLIVVDYTL-PDAVNDNAELYCKNGLPFVMGTTG 113 (286)
T ss_pred HHHHhhccCCCEEEEECCC-hHHHHHHHHHHHHCCCCEEEECCC
Confidence 33333345688 8999875 444777788778888888888654
No 375
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=38.68 E-value=56 Score=20.71 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=17.3
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGG 41 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G 41 (105)
++|+||+|+.+...-...-+.++..+
T Consensus 111 ~~DvVi~~~d~~~~r~~l~~~~~~~~ 136 (228)
T cd00757 111 GYDLVLDCTDNFATRYLINDACVKLG 136 (228)
T ss_pred CCCEEEEcCCCHHHHHHHHHHHHHcC
Confidence 69999999998875333444444443
No 376
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=38.50 E-value=1.2e+02 Score=20.35 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=11.7
Q ss_pred cEEEEccCChHHHHHHHHhhhcCCEEEEEc
Q 040104 18 DVSFDCAGFNKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 18 d~vid~~g~~~~~~~~~~~l~~~G~~v~~g 47 (105)
.+.+|++|+-. .+..-.+...|=-++++|
T Consensus 234 ~~~lEaSGgIt-~~ni~~yA~tGVD~IS~g 262 (280)
T COG0157 234 RALLEASGGIT-LENIREYAETGVDVISVG 262 (280)
T ss_pred ceEEEEeCCCC-HHHHHHHhhcCCCEEEeC
Confidence 34444444433 333333333333344443
No 377
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=38.44 E-value=1e+02 Score=20.30 Aligned_cols=42 Identities=14% Similarity=0.280 Sum_probs=30.4
Q ss_pred HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEE
Q 040104 5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLV 46 (105)
Q Consensus 5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 46 (105)
-...+......++|.++-...++..+...++-....|.-|+.
T Consensus 80 Q~~~i~~~ia~~~daIiv~~~d~~~~~~~v~~a~~aGIpVv~ 121 (322)
T COG1879 80 QIAQIEDLIAQGVDAIIINPVDPDALTPAVKKAKAAGIPVVT 121 (322)
T ss_pred HHHHHHHHHHcCCCEEEEcCCChhhhHHHHHHHHHCCCcEEE
Confidence 334455554578999998888888788888888887755544
No 378
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=38.34 E-value=44 Score=22.17 Aligned_cols=33 Identities=24% Similarity=0.197 Sum_probs=22.9
Q ss_pred CCcEE-----EEccCCh-HHHHHHHHhhhcCCEEEEEcC
Q 040104 16 GIDVS-----FDCAGFN-KTMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 16 g~d~v-----id~~g~~-~~~~~~~~~l~~~G~~v~~g~ 48 (105)
.+|+| ||++-+- .-++....+|+|||.-+.+|.
T Consensus 165 ~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GP 203 (270)
T PF07942_consen 165 SFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGP 203 (270)
T ss_pred cccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCC
Confidence 56665 4555432 126677889999999999984
No 379
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=38.33 E-value=75 Score=21.52 Aligned_cols=36 Identities=25% Similarity=0.399 Sum_probs=25.1
Q ss_pred HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcC
Q 040104 4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG 40 (105)
Q Consensus 4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~ 40 (105)
+.++++++..|..+.+.+|+-++.+ .+++++.++.-
T Consensus 177 ~~v~~ir~~~g~~~~l~vDaN~~~~-~~~a~~~~~~l 212 (357)
T cd03316 177 ARVRAVREAVGPDVDLMVDANGRWD-LAEAIRLARAL 212 (357)
T ss_pred HHHHHHHHhhCCCCEEEEECCCCCC-HHHHHHHHHHh
Confidence 3456777777777889999877765 66666665543
No 380
>PRK06349 homoserine dehydrogenase; Provisional
Probab=38.32 E-value=1.2e+02 Score=21.37 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=20.1
Q ss_pred CCCCcEEEEccCChH-HHHHHHHhhhcCCEEE
Q 040104 14 GTGIDVSFDCAGFNK-TMSTALSATRAGGKVC 44 (105)
Q Consensus 14 ~~g~d~vid~~g~~~-~~~~~~~~l~~~G~~v 44 (105)
+..+|+|+||+|+.. +......+|+.|-.++
T Consensus 70 d~~iDvVve~tg~~~~~~~~~~~aL~~GkhVV 101 (426)
T PRK06349 70 DPDIDIVVELMGGIEPARELILKALEAGKHVV 101 (426)
T ss_pred CCCCCEEEECCCCchHHHHHHHHHHHCCCeEE
Confidence 347999999987643 3455556666654444
No 381
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=38.29 E-value=25 Score=20.03 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=15.6
Q ss_pred HHHHHHHhhhcCCEEEEE
Q 040104 29 TMSTALSATRAGGKVCLV 46 (105)
Q Consensus 29 ~~~~~~~~l~~~G~~v~~ 46 (105)
.+.....+|+|||.+++=
T Consensus 26 ~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 26 FFRRIYSLLRPGGILILE 43 (110)
T ss_dssp HHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHhhCCCCEEEEe
Confidence 478899999999999875
No 382
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=38.29 E-value=60 Score=20.49 Aligned_cols=31 Identities=13% Similarity=0.138 Sum_probs=18.9
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcC-CEEEEE
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAG-GKVCLV 46 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~ 46 (105)
++|+||||+.+...-....+.+... +.-.+.
T Consensus 117 ~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~ 148 (212)
T PRK08644 117 DCDIVVEAFDNAETKAMLVETVLEHPGKKLVA 148 (212)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 6899999998877433333444443 443333
No 383
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.27 E-value=34 Score=22.81 Aligned_cols=33 Identities=21% Similarity=0.184 Sum_probs=27.2
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
.+|++|-++|.+..+. -+++++|..++.+|...
T Consensus 201 ~ADIvIsAvGkp~~i~--~~~ik~gavVIDvGin~ 233 (278)
T PRK14172 201 KADILVVAIGRPKFID--EEYVKEGAIVIDVGTSS 233 (278)
T ss_pred hCCEEEEcCCCcCccC--HHHcCCCcEEEEeeccc
Confidence 5899999999998433 56699999999999643
No 384
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=38.26 E-value=64 Score=20.85 Aligned_cols=30 Identities=27% Similarity=0.253 Sum_probs=19.1
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEE
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCL 45 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~ 45 (105)
++|+||||+.+.......-+.++..+.-.+
T Consensus 122 ~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v 151 (245)
T PRK05690 122 GHDLVLDCTDNVATRNQLNRACFAAKKPLV 151 (245)
T ss_pred cCCEEEecCCCHHHHHHHHHHHHHhCCEEE
Confidence 699999999988743334444444444333
No 385
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=37.74 E-value=59 Score=20.97 Aligned_cols=28 Identities=14% Similarity=0.101 Sum_probs=17.9
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCE
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGK 42 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~ 42 (105)
.++|+||||+.+...-...-+.+...+.
T Consensus 113 ~~~DlVvd~~D~~~~r~~ln~~~~~~~i 140 (240)
T TIGR02355 113 AEHDIVVDCTDNVEVRNQLNRQCFAAKV 140 (240)
T ss_pred hcCCEEEEcCCCHHHHHHHHHHHHHcCC
Confidence 3689999999998743333344444443
No 386
>PRK08374 homoserine dehydrogenase; Provisional
Probab=37.43 E-value=73 Score=21.71 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=20.0
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEE
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVC 44 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v 44 (105)
..+|++||+++...+......+++.|=.+|
T Consensus 90 ~~~DVvVd~t~~~~a~~~~~~al~~G~~VV 119 (336)
T PRK08374 90 IDADIVVDVTNDKNAHEWHLEALKEGKSVV 119 (336)
T ss_pred CCCCEEEECCCcHHHHHHHHHHHhhCCcEE
Confidence 468999999987765555556665444433
No 387
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=37.32 E-value=95 Score=21.18 Aligned_cols=34 Identities=29% Similarity=0.244 Sum_probs=25.3
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcC
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~ 48 (105)
.++|+||-|++.....+.+..+++.|-.++..+.
T Consensus 67 ~~vD~Vf~alP~~~~~~~v~~a~~aG~~VID~S~ 100 (343)
T PRK00436 67 AGADVVFLALPHGVSMDLAPQLLEAGVKVIDLSA 100 (343)
T ss_pred cCCCEEEECCCcHHHHHHHHHHHhCCCEEEECCc
Confidence 4699999999998866666667666656666653
No 388
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=37.20 E-value=1e+02 Score=18.97 Aligned_cols=40 Identities=13% Similarity=0.139 Sum_probs=22.4
Q ss_pred HHHHHHHHc-CCCCcEEEEccCC-hHHHHHHHHhhhcCCEEE
Q 040104 5 EVEKIDKAM-GTGIDVSFDCAGF-NKTMSTALSATRAGGKVC 44 (105)
Q Consensus 5 ~~~~~~~~~-~~g~d~vid~~g~-~~~~~~~~~~l~~~G~~v 44 (105)
+.+.+.+.. ..+.++++|.+.. +..+...++.++..|--+
T Consensus 81 ~~~~~~~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v 122 (199)
T PF06414_consen 81 LAEKLIEYAIENRYNIIFEGTLSNPSKLRKLIREAKAAGYKV 122 (199)
T ss_dssp HHHHHHHHHHHCT--EEEE--TTSSHHHHHHHHHHHCTT-EE
T ss_pred HHHHHHHHHHHcCCCEEEecCCCChhHHHHHHHHHHcCCceE
Confidence 445555444 6789999997754 454555788888765333
No 389
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=36.99 E-value=33 Score=23.40 Aligned_cols=39 Identities=18% Similarity=0.247 Sum_probs=23.1
Q ss_pred HHcCCCCcEEEEccCChHH-HHHHHHhhhcCCEEEEEcCC
Q 040104 11 KAMGTGIDVSFDCAGFNKT-MSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 11 ~~~~~g~d~vid~~g~~~~-~~~~~~~l~~~G~~v~~g~~ 49 (105)
|....++|+|++|+|-... +.-.-.+-.-+|.++.+-.+
T Consensus 178 E~~~~~~DVivNCtGL~a~~L~gDd~~yPiRGqVl~V~Ap 217 (342)
T KOG3923|consen 178 EVARPEYDVIVNCTGLGAGKLAGDDDLYPIRGQVLKVDAP 217 (342)
T ss_pred HhccCCCcEEEECCccccccccCCcceeeccceEEEeeCC
Confidence 3333689999999875431 11111233445888887554
No 390
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.95 E-value=37 Score=22.75 Aligned_cols=33 Identities=12% Similarity=0.128 Sum_probs=27.9
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCC
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 49 (105)
+.+|++|-++|.+. + ---+++++|..++.+|..
T Consensus 201 ~~ADIvIsAvGk~~-~-i~~~~ik~gavVIDvGin 233 (284)
T PRK14177 201 RQADIIVGAVGKPE-F-IKADWISEGAVLLDAGYN 233 (284)
T ss_pred hhCCEEEEeCCCcC-c-cCHHHcCCCCEEEEecCc
Confidence 36899999999998 4 337889999999999974
No 391
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=36.93 E-value=87 Score=20.31 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=24.3
Q ss_pred HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcC
Q 040104 5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG 40 (105)
Q Consensus 5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~ 40 (105)
.++++++..|.++++.+|+-+.-. ..++.+.++.-
T Consensus 116 ~v~~vr~~~g~~~~l~vDaN~~w~-~~~A~~~~~~l 150 (263)
T cd03320 116 RLRALREALPADAKLRLDANGGWS-LEEALAFLEAL 150 (263)
T ss_pred HHHHHHHHcCCCCeEEEeCCCCCC-HHHHHHHHHhh
Confidence 456677766778999999877765 56666665543
No 392
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=36.84 E-value=71 Score=22.63 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=23.4
Q ss_pred CCcEEEEc-----cCC-hHHHHHHHHhhhcCCEEEEEc
Q 040104 16 GIDVSFDC-----AGF-NKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 16 g~d~vid~-----~g~-~~~~~~~~~~l~~~G~~v~~g 47 (105)
.+|+|+-. ... ...+..+.++|+|||++++..
T Consensus 332 ~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 332 SFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred CEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 58887753 122 245889999999999998764
No 393
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=36.77 E-value=78 Score=21.42 Aligned_cols=36 Identities=28% Similarity=0.337 Sum_probs=27.4
Q ss_pred hHHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhh
Q 040104 3 AEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATR 38 (105)
Q Consensus 3 ~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~ 38 (105)
.++.+.+.+.++++.+.++=+.++.++.+.++++.+
T Consensus 62 ~~la~~L~~~~p~~~~~v~f~~sGseAve~Alkla~ 97 (339)
T PF00202_consen 62 AELAEKLAELFPGGLDRVFFANSGSEAVEAALKLAR 97 (339)
T ss_dssp HHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccccceeeeccCchHHHHHHHHHhh
Confidence 356778888886688877776666666999998888
No 394
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=36.73 E-value=93 Score=19.61 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=25.1
Q ss_pred HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcC
Q 040104 4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG 40 (105)
Q Consensus 4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~ 40 (105)
+.++++++..|..+++.+|+-++-. .+.+.+.++.-
T Consensus 82 ~~i~~lr~~~g~~~~l~lDaN~~~~-~~~a~~~~~~l 117 (229)
T cd00308 82 ERVRAVREAFGPDARLAVDANGAWT-PKEAIRLIRAL 117 (229)
T ss_pred HHHHHHHHHhCCCCeEEEECCCCCC-HHHHHHHHHHh
Confidence 3456777777778999999987765 56666555543
No 395
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=36.65 E-value=83 Score=21.06 Aligned_cols=35 Identities=17% Similarity=0.091 Sum_probs=24.5
Q ss_pred HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhc
Q 040104 4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRA 39 (105)
Q Consensus 4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~ 39 (105)
+.++.+++..|.++++.+|+-+... ..++.+.++.
T Consensus 142 ~~v~~vr~~~g~~~~l~vDaN~~w~-~~~A~~~~~~ 176 (307)
T TIGR01927 142 MLVNLLLEALPDKAELRLDANGGLS-PDEAQQFLKA 176 (307)
T ss_pred HHHHHHHHHcCCCCeEEEeCCCCCC-HHHHHHHHHh
Confidence 3456677766777999999987765 5666665554
No 396
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=36.54 E-value=44 Score=21.43 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=17.9
Q ss_pred HHHHHHHHhhhcCCEEEEEcC
Q 040104 28 KTMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 28 ~~~~~~~~~l~~~G~~v~~g~ 48 (105)
..+....+.|+|||.+++...
T Consensus 145 ~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 145 ALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHHHHHHHhcCCCCEEEEEEe
Confidence 358899999999999998753
No 397
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=36.32 E-value=51 Score=20.50 Aligned_cols=33 Identities=18% Similarity=0.234 Sum_probs=23.5
Q ss_pred CCcEEEE-----ccCC-hHHHHHHHHhhhcCCEEEEEcC
Q 040104 16 GIDVSFD-----CAGF-NKTMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 16 g~d~vid-----~~g~-~~~~~~~~~~l~~~G~~v~~g~ 48 (105)
.+|+|+- +++. ...+..+.++|+|+|++++...
T Consensus 67 ~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 67 TYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred CCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 5787763 2333 2357889999999999998754
No 398
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=36.19 E-value=42 Score=20.90 Aligned_cols=83 Identities=14% Similarity=0.125 Sum_probs=40.3
Q ss_pred HHHHcCCCCcE-EEEccCChH-------HHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeec---c-CCC
Q 040104 9 IDKAMGTGIDV-SFDCAGFNK-------TMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFR---Y-KNT 76 (105)
Q Consensus 9 ~~~~~~~g~d~-vid~~g~~~-------~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~---~-~~~ 76 (105)
+++...+++|+ +||+.|... .+...++.+.+.-.+.++........+....-.++...+.+... . ...
T Consensus 76 l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTKlDet~~ 155 (196)
T PF00448_consen 76 LEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTKLDETAR 155 (196)
T ss_dssp HHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEESTTSSST
T ss_pred HHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccCceEEEEeecCCCC
Confidence 33333457885 558888643 24445556666666666654333222221111122222223322 2 456
Q ss_pred HHHHHHHHHcCCCCC
Q 040104 77 WPLCLEFLRSGKIDI 91 (105)
Q Consensus 77 ~~~~~~~v~~g~i~~ 91 (105)
+..+++++.+..+++
T Consensus 156 ~G~~l~~~~~~~~Pi 170 (196)
T PF00448_consen 156 LGALLSLAYESGLPI 170 (196)
T ss_dssp THHHHHHHHHHTSEE
T ss_pred cccceeHHHHhCCCe
Confidence 677887777766543
No 399
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=36.00 E-value=86 Score=21.93 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=25.1
Q ss_pred HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcC
Q 040104 5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG 40 (105)
Q Consensus 5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~ 40 (105)
.++++++..|..+++.+|+-+.-. .+.++++++.-
T Consensus 197 ~v~avReavG~d~~l~vDaN~~~~-~~~Ai~~~~~l 231 (394)
T PRK15440 197 MVADMREKVGDDFWLMLDCWMSLD-VNYATKLAHAC 231 (394)
T ss_pred HHHHHHHhhCCCCeEEEECCCCCC-HHHHHHHHHHh
Confidence 356677777778999999987665 66666666543
No 400
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=35.80 E-value=50 Score=21.48 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=16.2
Q ss_pred HHHHHHHhhhcCCEEEEEcC
Q 040104 29 TMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 29 ~~~~~~~~l~~~G~~v~~g~ 48 (105)
.+..+++++++||+++-..+
T Consensus 181 iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 181 LIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred HHHHHHHhcCCCCEEEEEeC
Confidence 57788999999999975544
No 401
>PRK14968 putative methyltransferase; Provisional
Probab=35.49 E-value=50 Score=19.70 Aligned_cols=18 Identities=17% Similarity=0.359 Sum_probs=15.2
Q ss_pred HHHHHHHhhhcCCEEEEE
Q 040104 29 TMSTALSATRAGGKVCLV 46 (105)
Q Consensus 29 ~~~~~~~~l~~~G~~v~~ 46 (105)
.+..+.++|+++|.++++
T Consensus 130 ~i~~~~~~Lk~gG~~~~~ 147 (188)
T PRK14968 130 FLDEVGRYLKPGGRILLL 147 (188)
T ss_pred HHHHHHHhcCCCeEEEEE
Confidence 378889999999988776
No 402
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.41 E-value=38 Score=22.68 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=26.9
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
.+|++|-++|.+..+. -+++++|..++.+|...
T Consensus 204 ~ADIVI~AvG~p~li~--~~~vk~GavVIDVGi~~ 236 (286)
T PRK14184 204 EADFLFVAIGRPRFVT--ADMVKPGAVVVDVGINR 236 (286)
T ss_pred hCCEEEEecCCCCcCC--HHHcCCCCEEEEeeeec
Confidence 5899999999998444 36779999999999643
No 403
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=35.30 E-value=1.4e+02 Score=20.02 Aligned_cols=17 Identities=12% Similarity=0.036 Sum_probs=12.0
Q ss_pred HHHHhhhcCCEEEEEcC
Q 040104 32 TALSATRAGGKVCLVGM 48 (105)
Q Consensus 32 ~~~~~l~~~G~~v~~g~ 48 (105)
.++..++.+|+++.++.
T Consensus 163 ~~~p~m~~~G~II~isS 179 (303)
T PLN02730 163 HFGPIMNPGGASISLTY 179 (303)
T ss_pred HHHHHHhcCCEEEEEec
Confidence 34455666799998875
No 404
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=35.11 E-value=1.2e+02 Score=19.16 Aligned_cols=43 Identities=12% Similarity=0.241 Sum_probs=26.0
Q ss_pred HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCC-EEEEEc
Q 040104 5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGG-KVCLVG 47 (105)
Q Consensus 5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G-~~v~~g 47 (105)
..+.++.....++|.+|-+......+...+..++..| .++.+.
T Consensus 49 ~~~~~~~~~~~~vdgiIi~~~~~~~~~~~l~~~~~~~iPvv~~~ 92 (272)
T cd06300 49 QIADIRNLIAQGVDAIIINPASPTALNPVIEEACEAGIPVVSFD 92 (272)
T ss_pred HHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEEe
Confidence 3455555555689988876655443555666666655 455554
No 405
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=35.10 E-value=94 Score=20.09 Aligned_cols=34 Identities=21% Similarity=0.225 Sum_probs=22.5
Q ss_pred HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhh
Q 040104 4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATR 38 (105)
Q Consensus 4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~ 38 (105)
+.++++++..|..+.+.+|+-++-+ .+++.+.++
T Consensus 117 ~~v~~vr~~~g~~~~l~vDan~~~~-~~~a~~~~~ 150 (265)
T cd03315 117 AVVAALREAVGDDAELRVDANRGWT-PKQAIRALR 150 (265)
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCcC-HHHHHHHHH
Confidence 3456777777767889999877655 555554433
No 406
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=34.82 E-value=93 Score=21.22 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=25.0
Q ss_pred HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcC
Q 040104 5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG 40 (105)
Q Consensus 5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~ 40 (105)
.++++++..|..+++.+|+-+.-. ...+++.++.-
T Consensus 165 ~i~avr~~~g~~~~l~vDaN~~~~-~~~A~~~~~~l 199 (352)
T cd03325 165 RVAALREAVGPDIDIGVDFHGRVS-KPMAKDLAKEL 199 (352)
T ss_pred HHHHHHHhhCCCCEEEEECCCCCC-HHHHHHHHHhc
Confidence 345666666778899999987765 67777776654
No 407
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=34.49 E-value=45 Score=20.31 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=25.2
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
.+|+||-++|.+..+.. +.++++-.++.+|.+.
T Consensus 87 ~aDiVIsat~~~~ii~~--~~~~~~~viIDla~pr 119 (168)
T cd01080 87 QADIVIVAVGKPGLVKG--DMVKPGAVVIDVGINR 119 (168)
T ss_pred hCCEEEEcCCCCceecH--HHccCCeEEEEccCCC
Confidence 58999999999874443 3577887888888765
No 408
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=34.30 E-value=68 Score=19.86 Aligned_cols=33 Identities=12% Similarity=0.095 Sum_probs=23.0
Q ss_pred CCCcEEEE-----ccCChH-HHHHHHHhhhcCCEEEEEc
Q 040104 15 TGIDVSFD-----CAGFNK-TMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 15 ~g~d~vid-----~~g~~~-~~~~~~~~l~~~G~~v~~g 47 (105)
+.+|+|+- ...++. .+..+..+|+++|.++...
T Consensus 111 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 111 KSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred CCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 46888764 344433 4677889999999988654
No 409
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=33.99 E-value=49 Score=21.22 Aligned_cols=32 Identities=13% Similarity=0.079 Sum_probs=23.9
Q ss_pred CCCcEEEEcc-----CC-hHHHHHHHHhhhcCCEEEEE
Q 040104 15 TGIDVSFDCA-----GF-NKTMSTALSATRAGGKVCLV 46 (105)
Q Consensus 15 ~g~d~vid~~-----g~-~~~~~~~~~~l~~~G~~v~~ 46 (105)
+.+|+|+-.. .. ...+....+.|+|||++++.
T Consensus 88 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 88 PDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred CCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 4689888643 22 33578899999999999875
No 410
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=33.91 E-value=67 Score=20.87 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=19.6
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~ 48 (105)
.+|+|+|++.... ..+....+...|.-+++|.
T Consensus 60 ~~DvVid~t~p~~-~~~~~~~al~~G~~vvigt 91 (257)
T PRK00048 60 DADVLIDFTTPEA-TLENLEFALEHGKPLVIGT 91 (257)
T ss_pred CCCEEEECCCHHH-HHHHHHHHHHcCCCEEEEC
Confidence 5899999886544 4444444444555555663
No 411
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=33.82 E-value=1.2e+02 Score=18.77 Aligned_cols=35 Identities=20% Similarity=0.194 Sum_probs=24.1
Q ss_pred CCCcEEEEccCChH-----------------------HHHHHHHhhhcCCEEEEEcCC
Q 040104 15 TGIDVSFDCAGFNK-----------------------TMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 15 ~g~d~vid~~g~~~-----------------------~~~~~~~~l~~~G~~v~~g~~ 49 (105)
+++|.++.++|... .+.....+++++|+++.++..
T Consensus 80 ~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~ 137 (238)
T PRK05786 80 NAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSM 137 (238)
T ss_pred CCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecc
Confidence 46899999887421 134455666778999988753
No 412
>PRK06823 ornithine cyclodeaminase; Validated
Probab=33.72 E-value=52 Score=22.22 Aligned_cols=35 Identities=9% Similarity=0.155 Sum_probs=25.3
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
.+.|+|+-|++...-+- -.+.+++|-.+..+|...
T Consensus 191 ~~ADIV~taT~s~~P~~-~~~~l~~G~hi~~iGs~~ 225 (315)
T PRK06823 191 HAANLIVTTTPSREPLL-QAEDIQPGTHITAVGADS 225 (315)
T ss_pred cCCCEEEEecCCCCcee-CHHHcCCCcEEEecCCCC
Confidence 47899998887655222 235789999999999644
No 413
>PRK07806 short chain dehydrogenase; Provisional
Probab=33.68 E-value=1.2e+02 Score=18.88 Aligned_cols=34 Identities=26% Similarity=0.247 Sum_probs=22.0
Q ss_pred CCCcEEEEccCCh-------------------HHHHHHHHhhhcCCEEEEEcC
Q 040104 15 TGIDVSFDCAGFN-------------------KTMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 15 ~g~d~vid~~g~~-------------------~~~~~~~~~l~~~G~~v~~g~ 48 (105)
+++|++|.+.|.. ..++.+...++.+|+++.++.
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS 135 (248)
T PRK07806 83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS 135 (248)
T ss_pred CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence 3689999887642 123445555556788888864
No 414
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=33.58 E-value=96 Score=21.16 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=25.3
Q ss_pred HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcC
Q 040104 4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG 40 (105)
Q Consensus 4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~ 40 (105)
+.++++++..|..+.+.+|+-+.-. ..++.+.++.-
T Consensus 174 ~~v~air~~~g~~~~l~vDaN~~~~-~~~A~~~~~~l 209 (355)
T cd03321 174 AVVRSIRQAVGDGVGLMVDYNQSLT-VPEAIERGQAL 209 (355)
T ss_pred HHHHHHHHhhCCCCEEEEeCCCCcC-HHHHHHHHHHH
Confidence 3456777776778899999877665 66666665553
No 415
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=33.43 E-value=52 Score=20.93 Aligned_cols=26 Identities=35% Similarity=0.371 Sum_probs=19.1
Q ss_pred CCCcEEEEccCChHHHH--HHHHhhhcC
Q 040104 15 TGIDVSFDCAGFNKTMS--TALSATRAG 40 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~--~~~~~l~~~ 40 (105)
..+|+|+-|+|...+++ .+..+|+..
T Consensus 33 ~ePDVVlA~aGd~pT~E~lAA~~lLr~~ 60 (203)
T PF09363_consen 33 EEPDVVLACAGDVPTLEVLAAASLLREH 60 (203)
T ss_dssp TT-SEEEEEESHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEecCchhhHHHHHHHHHHHHh
Confidence 46899999999987655 466777765
No 416
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=33.35 E-value=1.6e+02 Score=20.22 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=27.1
Q ss_pred HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEE
Q 040104 4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLV 46 (105)
Q Consensus 4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 46 (105)
.+.+++.+.. +.+.++-+.++..++..++.++++|..++..
T Consensus 58 ~le~~lA~le--g~~~~v~~~sG~aAi~~~l~~l~~GD~VI~~ 98 (364)
T PRK07269 58 KLEETLAAIE--SADYALATSSGMSAIVLAFSVFPVGSKVVAV 98 (364)
T ss_pred HHHHHHHHHh--CCCeEEEeCCHHHHHHHHHHHhCCCCEEEEe
Confidence 4445566554 3455566666666688888888888877765
No 417
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=33.02 E-value=1.1e+02 Score=18.26 Aligned_cols=31 Identities=3% Similarity=0.009 Sum_probs=20.7
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEE
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLV 46 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~ 46 (105)
.++|+||-++++.+ .+..+..+++.+.++..
T Consensus 69 ~~a~lViaaT~d~e-~N~~i~~~a~~~~~vn~ 99 (157)
T PRK06719 69 KDAHLIYAATNQHA-VNMMVKQAAHDFQWVNV 99 (157)
T ss_pred CCceEEEECCCCHH-HHHHHHHHHHHCCcEEE
Confidence 37899999999988 66655555444434443
No 418
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=32.95 E-value=40 Score=23.25 Aligned_cols=32 Identities=25% Similarity=0.231 Sum_probs=27.3
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 49 (105)
.+|++|-++|.+.. ---+++++|..++.+|..
T Consensus 257 ~ADIvIsAvGkp~~--v~~d~vk~GavVIDVGin 288 (345)
T PLN02897 257 KADIVIAAAGIPNL--VRGSWLKPGAVVIDVGTT 288 (345)
T ss_pred hCCEEEEccCCcCc--cCHHHcCCCCEEEEcccc
Confidence 58999999999983 346789999999999964
No 419
>PRK07482 hypothetical protein; Provisional
Probab=32.87 E-value=1.8e+02 Score=20.72 Aligned_cols=35 Identities=9% Similarity=0.022 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhh
Q 040104 4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATR 38 (105)
Q Consensus 4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~ 38 (105)
++.+.+.+.++.+.+.++=+..+.++.+.++++.+
T Consensus 98 ~lAe~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr 132 (461)
T PRK07482 98 TLSKRIIDRAPAGMSKVYYGLSGSDANETQIKLVW 132 (461)
T ss_pred HHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHH
Confidence 45667777766567766554444445899999886
No 420
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=32.76 E-value=1.3e+02 Score=19.09 Aligned_cols=84 Identities=17% Similarity=0.246 Sum_probs=45.6
Q ss_pred HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchh-hhhcCeEEEEeecc-CCCHHHH
Q 040104 4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTP-AAAREVDVVGVFRY-KNTWPLC 80 (105)
Q Consensus 4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~i~~~~~~-~~~~~~~ 80 (105)
++-+.+..+. ..|+++..-..+ ..|-.....-++|-.+..+-.|.. ...+... +..++.++--.+.. ..+.+..
T Consensus 15 ~vr~al~~Ll~s~G~~v~~~~s~--~~fL~~~~~~~pGclllDvrMPg~-sGlelq~~L~~~~~~~PVIfiTGhgDIpma 91 (202)
T COG4566 15 SVRDALAFLLESAGFQVKCFASA--EEFLAAAPLDRPGCLLLDVRMPGM-SGLELQDRLAERGIRLPVIFLTGHGDIPMA 91 (202)
T ss_pred HHHHHHHHHHHhCCceeeeecCH--HHHHhhccCCCCCeEEEecCCCCC-chHHHHHHHHhcCCCCCEEEEeCCCChHHH
Confidence 3445555554 457776544333 335555444555555555554432 2244332 33344443323333 7899999
Q ss_pred HHHHHcCCCC
Q 040104 81 LEFLRSGKID 90 (105)
Q Consensus 81 ~~~v~~g~i~ 90 (105)
.+.+..|.++
T Consensus 92 V~AmK~GAvD 101 (202)
T COG4566 92 VQAMKAGAVD 101 (202)
T ss_pred HHHHHcchhh
Confidence 9999999885
No 421
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.73 E-value=42 Score=22.44 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=27.4
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
.+|++|-++|.+..+. -+++++|..++.+|...
T Consensus 199 ~ADIvI~AvG~p~~i~--~~~vk~GavVIDvGin~ 231 (282)
T PRK14169 199 EADILVVAVGVPHFIG--ADAVKPGAVVIDVGISR 231 (282)
T ss_pred hCCEEEEccCCcCccC--HHHcCCCcEEEEeeccc
Confidence 5899999999998433 56899999999999643
No 422
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=32.68 E-value=1.1e+02 Score=20.86 Aligned_cols=34 Identities=29% Similarity=0.377 Sum_probs=24.6
Q ss_pred HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhc
Q 040104 5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRA 39 (105)
Q Consensus 5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~ 39 (105)
.++++++..|..+.+.+|+-++-+ .+++.+.++.
T Consensus 123 rv~avRe~lGpd~~LrvDAN~~ws-~~~Ai~~~~~ 156 (327)
T PRK02901 123 RVNAVRDALGPDGRVRVDANGGWS-VDEAVAAARA 156 (327)
T ss_pred HHHHHHHhcCCCCEEEEECCCCCC-HHHHHHHHHH
Confidence 446677777778999999988765 5666666554
No 423
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=32.64 E-value=1.1e+02 Score=21.58 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=23.0
Q ss_pred CCCcEEEEccCChH---HHHHHHHh----------hhcCCEEEEEcC
Q 040104 15 TGIDVSFDCAGFNK---TMSTALSA----------TRAGGKVCLVGM 48 (105)
Q Consensus 15 ~g~d~vid~~g~~~---~~~~~~~~----------l~~~G~~v~~g~ 48 (105)
+++|+|+||+-++. ++.++.-+ |+--|.+.++-.
T Consensus 155 ~~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSaLr~EGQLtvYny 201 (427)
T KOG2017|consen 155 KQYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSALRWEGQLTVYNY 201 (427)
T ss_pred hccceEEEcCCCccchhhhhhHHHHcCCcccccccccccceeEEeec
Confidence 47999999998876 34444443 344677777654
No 424
>PRK10812 putative DNAse; Provisional
Probab=32.29 E-value=1.5e+02 Score=19.46 Aligned_cols=45 Identities=11% Similarity=0.042 Sum_probs=32.2
Q ss_pred HHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcC-CEEEEEcCCCC
Q 040104 7 EKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHH 51 (105)
Q Consensus 7 ~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~ 51 (105)
+.+.+....|+..++....++..+..+.++.+.. +.+..+|.++.
T Consensus 24 ~vl~~a~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~GiHP~ 69 (265)
T PRK10812 24 DVLAKAAARDVKFCLAVATTLPGYRHMRDLVGERDNVVFSCGVHPL 69 (265)
T ss_pred HHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHhhCCCeEEEEEeCCC
Confidence 3344433458988888777777788888888765 68888898653
No 425
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=32.27 E-value=1.1e+02 Score=21.32 Aligned_cols=35 Identities=23% Similarity=0.354 Sum_probs=24.5
Q ss_pred HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcC
Q 040104 5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG 40 (105)
Q Consensus 5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~ 40 (105)
.++++++..|..+++.+|+-+.-. ..++++.++.-
T Consensus 194 ~v~avRe~~G~~~~l~vDaN~~w~-~~~A~~~~~~l 228 (385)
T cd03326 194 RIEAALDVLGDGARLAVDANGRFD-LETAIAYAKAL 228 (385)
T ss_pred HHHHHHHhcCCCCeEEEECCCCCC-HHHHHHHHHHh
Confidence 446667666778899999877665 66666666543
No 426
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=32.23 E-value=1.4e+02 Score=21.17 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=14.8
Q ss_pred HHHHHHHHcCCCCcEEEEccCCh
Q 040104 5 EVEKIDKAMGTGIDVSFDCAGFN 27 (105)
Q Consensus 5 ~~~~~~~~~~~g~d~vid~~g~~ 27 (105)
+.+++++.. +++|+++.++|.+
T Consensus 121 lie~I~e~~-G~IDiLVnSaA~~ 142 (398)
T PRK13656 121 VIELIKQDL-GQVDLVVYSLASP 142 (398)
T ss_pred HHHHHHHhc-CCCCEEEECCccC
Confidence 344455444 3699999988876
No 427
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=32.16 E-value=1.6e+02 Score=19.88 Aligned_cols=41 Identities=20% Similarity=0.166 Sum_probs=25.9
Q ss_pred HHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCC-EEEEEc
Q 040104 7 EKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGG-KVCLVG 47 (105)
Q Consensus 7 ~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G-~~v~~g 47 (105)
+.+..+...++|.++-+...+..+...++-++..| .++.+.
T Consensus 71 ~~i~~li~~~vdgIiv~~~d~~al~~~l~~a~~~gIpVV~~d 112 (336)
T PRK15408 71 QLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQRGVKVLTWD 112 (336)
T ss_pred HHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHCCCeEEEeC
Confidence 44455556789988876656565677777666666 444443
No 428
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.08 E-value=44 Score=22.36 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=27.1
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 49 (105)
.+|++|-++|.+..+. -+++++|..++.+|..
T Consensus 200 ~ADIvIsAvGkp~~i~--~~~vk~GavVIDvGin 231 (282)
T PRK14166 200 QADLIIVAAGCVNLLR--SDMVKEGVIVVDVGIN 231 (282)
T ss_pred hCCEEEEcCCCcCccC--HHHcCCCCEEEEeccc
Confidence 5899999999998433 5589999999999964
No 429
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=31.92 E-value=98 Score=20.63 Aligned_cols=34 Identities=21% Similarity=0.189 Sum_probs=25.0
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCC
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 49 (105)
..+|++||.+--.. ....++.+...|.-.++|..
T Consensus 68 ~~~DV~IDFT~P~~-~~~~l~~~~~~~~~lVIGTT 101 (266)
T COG0289 68 ADADVLIDFTTPEA-TLENLEFALEHGKPLVIGTT 101 (266)
T ss_pred cCCCEEEECCCchh-hHHHHHHHHHcCCCeEEECC
Confidence 35799999876544 67777777777777777754
No 430
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=31.81 E-value=1.7e+02 Score=20.09 Aligned_cols=49 Identities=22% Similarity=0.261 Sum_probs=30.4
Q ss_pred hHHHHHHHHHcC-CCCcEEEEccCCh--------------------------HHHHHHHHhhhc-CCEEEEEcCCCC
Q 040104 3 AEEVEKIDKAMG-TGIDVSFDCAGFN--------------------------KTMSTALSATRA-GGKVCLVGMGHH 51 (105)
Q Consensus 3 ~~~~~~~~~~~~-~g~d~vid~~g~~--------------------------~~~~~~~~~l~~-~G~~v~~g~~~~ 51 (105)
.+..+.+++..+ .|.=.+|+++|.. ......+.++|+ .||+|.++...+
T Consensus 92 ~~a~~~V~~~l~~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~G 168 (322)
T KOG1610|consen 92 KEAAQWVKKHLGEDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLG 168 (322)
T ss_pred HHHHHHHHHhcccccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEeccccc
Confidence 345566677664 4788889988832 112234445555 599999986443
No 431
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=31.74 E-value=60 Score=20.85 Aligned_cols=19 Identities=16% Similarity=0.260 Sum_probs=16.2
Q ss_pred HHHHHHHhhhcCCEEEEEc
Q 040104 29 TMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 29 ~~~~~~~~l~~~G~~v~~g 47 (105)
...+.++.|+|||.+.+.-
T Consensus 148 vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 148 VNAAVFKALKPGGVYLVED 166 (238)
T ss_pred HHHHHHHhcCCCcEEEEEe
Confidence 4667999999999999874
No 432
>PF13466 STAS_2: STAS domain
Probab=31.50 E-value=78 Score=16.01 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=26.4
Q ss_pred hHHHHHHHHHcCCCCcEEEEccCChH-------HHHHHHHhh-hcCCEEEEEcCC
Q 040104 3 AEEVEKIDKAMGTGIDVSFDCAGFNK-------TMSTALSAT-RAGGKVCLVGMG 49 (105)
Q Consensus 3 ~~~~~~~~~~~~~g~d~vid~~g~~~-------~~~~~~~~l-~~~G~~v~~g~~ 49 (105)
+.+.+.+.+....+-++++|+.+-.. .+....+.+ +.++.+.+.|.+
T Consensus 13 ~~l~~~l~~~~~~~~~v~lDls~v~~iDsagl~lL~~~~~~~~~~g~~~~l~~~~ 67 (80)
T PF13466_consen 13 PELRQALQALLASGRPVVLDLSGVEFIDSAGLQLLLAAARRARARGRQLRLTGPS 67 (80)
T ss_pred HHHHHHHHHHHcCCCeEEEECCCCCeecHHHHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 34455566555445788888876543 233333333 456677776643
No 433
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=31.48 E-value=1.2e+02 Score=21.97 Aligned_cols=45 Identities=29% Similarity=0.360 Sum_probs=31.9
Q ss_pred hHHHHHHHHHc-CCCCcE--EEEccCChHHHHHHHHhhhcCCEEEEEc
Q 040104 3 AEEVEKIDKAM-GTGIDV--SFDCAGFNKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 3 ~~~~~~~~~~~-~~g~d~--vid~~g~~~~~~~~~~~l~~~G~~v~~g 47 (105)
+++.+..-+.. ..|+|+ ++|+......+..+++.++..|..+.+.
T Consensus 104 ddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~ 151 (468)
T PRK12581 104 DDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLC 151 (468)
T ss_pred chHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 35555444444 568885 6787777777899999999988876654
No 434
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=31.47 E-value=1.1e+02 Score=21.63 Aligned_cols=34 Identities=9% Similarity=0.111 Sum_probs=24.4
Q ss_pred HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhc
Q 040104 5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRA 39 (105)
Q Consensus 5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~ 39 (105)
.++++++..|..+++.+|+-+.-+ ...+.++++.
T Consensus 229 ~v~avRe~vG~~~~L~vDaN~~w~-~~~A~~~~~~ 262 (415)
T cd03324 229 RCRLAREVIGPDNKLMIDANQRWD-VPEAIEWVKQ 262 (415)
T ss_pred HHHHHHHhcCCCCeEEEECCCCCC-HHHHHHHHHH
Confidence 456777777778999999877655 5666666554
No 435
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=31.39 E-value=56 Score=20.69 Aligned_cols=19 Identities=11% Similarity=0.205 Sum_probs=16.7
Q ss_pred HHHHHHHhhhcCCEEEEEc
Q 040104 29 TMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 29 ~~~~~~~~l~~~G~~v~~g 47 (105)
.+....+.|++||++++..
T Consensus 143 ~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 143 LLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred HHHHHHHhcCCCeEEEEee
Confidence 5788999999999999875
No 436
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=31.20 E-value=94 Score=20.18 Aligned_cols=39 Identities=26% Similarity=0.312 Sum_probs=26.4
Q ss_pred hHHHHHHHHHcC-CCCcEEEEccCChHHHHHHHHhhhcCCE
Q 040104 3 AEEVEKIDKAMG-TGIDVSFDCAGFNKTMSTALSATRAGGK 42 (105)
Q Consensus 3 ~~~~~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~~G~ 42 (105)
+++.+.||...+ .++|+=+| +..+..+-..++.||-+.-
T Consensus 103 AKvm~~ikavLgaTKiDLPVD-INDPYDlGLLLRhLRHHSN 142 (238)
T PF02084_consen 103 AKVMEDIKAVLGATKIDLPVD-INDPYDLGLLLRHLRHHSN 142 (238)
T ss_pred HHHHHHHHHHhcccccccccc-cCChhhHHHHHHHHHHHHH
Confidence 455666777664 47777777 5566667777888877743
No 437
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=31.19 E-value=1.2e+02 Score=20.11 Aligned_cols=18 Identities=6% Similarity=0.100 Sum_probs=13.2
Q ss_pred CCCcEEEEccCChHHHHH
Q 040104 15 TGIDVSFDCAGFNKTMST 32 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~ 32 (105)
.++|+||||+.....++.
T Consensus 83 ~~~d~ViEav~E~~~~K~ 100 (286)
T PRK07819 83 ADRQLVIEAVVEDEAVKT 100 (286)
T ss_pred CCCCEEEEecccCHHHHH
Confidence 479999999887654443
No 438
>PRK10867 signal recognition particle protein; Provisional
Probab=31.17 E-value=1.5e+02 Score=21.17 Aligned_cols=34 Identities=26% Similarity=0.275 Sum_probs=20.3
Q ss_pred CCCCc-EEEEccCCh----HHH---HHHHHhhhcCCEEEEEc
Q 040104 14 GTGID-VSFDCAGFN----KTM---STALSATRAGGKVCLVG 47 (105)
Q Consensus 14 ~~g~d-~vid~~g~~----~~~---~~~~~~l~~~G~~v~~g 47 (105)
..++| ++||+.|.. ..+ ....+.+.|..++.++-
T Consensus 181 ~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVld 222 (433)
T PRK10867 181 ENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVD 222 (433)
T ss_pred hcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEe
Confidence 35788 566898853 222 33444556777766664
No 439
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=30.80 E-value=99 Score=20.10 Aligned_cols=24 Identities=8% Similarity=0.127 Sum_probs=20.0
Q ss_pred HHHHHHHHhhhcCCEEEEEcCCCC
Q 040104 28 KTMSTALSATRAGGKVCLVGMGHH 51 (105)
Q Consensus 28 ~~~~~~~~~l~~~G~~v~~g~~~~ 51 (105)
+..+...++|..|.|++.+-+..+
T Consensus 30 ss~~~y~~aL~~GcRcvElD~wdg 53 (231)
T cd08598 30 SSVEGYIRALQRGCRCVEIDVWDG 53 (231)
T ss_pred cCHHHHHHHHHhCCcEEEEEeecC
Confidence 347889999999999999987654
No 440
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=30.73 E-value=1.3e+02 Score=20.65 Aligned_cols=33 Identities=24% Similarity=0.116 Sum_probs=24.3
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~ 48 (105)
++|++|-|+++....+.+-.++..|-+++..+.
T Consensus 68 ~~DvVf~alP~~~s~~~~~~~~~~G~~VIDlS~ 100 (346)
T TIGR01850 68 DADVVFLALPHGVSAELAPELLAAGVKVIDLSA 100 (346)
T ss_pred CCCEEEECCCchHHHHHHHHHHhCCCEEEeCCh
Confidence 699999999998755556666666666666653
No 441
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=30.61 E-value=37 Score=20.37 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=24.7
Q ss_pred CCCcEEEEcc----CCh-------HHHHHHHHhhhcCCEEEEEcCC
Q 040104 15 TGIDVSFDCA----GFN-------KTMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 15 ~g~d~vid~~----g~~-------~~~~~~~~~l~~~G~~v~~g~~ 49 (105)
+.+|+|+-.. |.. ..+..+.++|+++|++..+...
T Consensus 97 ~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 97 GKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp TCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred cceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 5788888653 322 2477899999999999877644
No 442
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=30.58 E-value=54 Score=20.95 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=23.9
Q ss_pred CCCcEEEEccC-----C-hHHHHHHHHhhhcCCEEEEEc
Q 040104 15 TGIDVSFDCAG-----F-NKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 15 ~g~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g 47 (105)
+.+|+|+-... . ...+....++|++||++++..
T Consensus 92 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 92 QALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred CCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 46888875422 2 235888999999999998863
No 443
>PF12471 GTP_CH_N: GTP cyclohydrolase N terminal ; InterPro: IPR022163 This domain family is found in bacteria and eukaryotes, and is approximately 190 amino acids in length. This family is the N-terminal of GTP cyclohydrolase, the rate limiting enzyme in the synthesis of tetrahydrobiopterin.
Probab=30.40 E-value=85 Score=19.71 Aligned_cols=33 Identities=15% Similarity=0.143 Sum_probs=22.4
Q ss_pred hhcCeEEEEeecc---CCCHHHHHHHHHcCCCCCCC
Q 040104 61 AAREVDVVGVFRY---KNTWPLCLEFLRSGKIDIKP 93 (105)
Q Consensus 61 ~~~~~~i~~~~~~---~~~~~~~~~~v~~g~i~~~~ 93 (105)
+.++..|+-+..- .-.++|+.+.+++|++.++-
T Consensus 115 ~~~G~DiRPTIAvTkAh~~lpEi~eav~~GrL~~DG 150 (194)
T PF12471_consen 115 IEEGYDIRPTIAVTKAHMKLPEIREAVRKGRLVPDG 150 (194)
T ss_pred HHcCCccCccceeeccccCcHHHHHHHHhCCCCCCC
Confidence 3455555544433 45689999999999997653
No 444
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=30.39 E-value=1.4e+02 Score=20.86 Aligned_cols=35 Identities=11% Similarity=0.240 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhh
Q 040104 2 IAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSAT 37 (105)
Q Consensus 2 ~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l 37 (105)
++|....++++-..|+|+++-+-|... .......+
T Consensus 86 a~DT~~~~r~~~~~gVdlIvfaGGDGT-arDVa~av 120 (355)
T COG3199 86 AEDTINAVRRMVERGVDLIVFAGGDGT-ARDVAEAV 120 (355)
T ss_pred HHHHHHHHHHHHhcCceEEEEeCCCcc-HHHHHhhc
Confidence 456667777777779999888777766 67776666
No 445
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=30.33 E-value=1.3e+02 Score=19.57 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=13.4
Q ss_pred CCcEEEEccCChHHHHHHH----HhhhcCCEEEEEcC
Q 040104 16 GIDVSFDCAGFNKTMSTAL----SATRAGGKVCLVGM 48 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~----~~l~~~G~~v~~g~ 48 (105)
.+|+||-|++-.. +...+ ..++++..++.+|.
T Consensus 45 ~~DlvvlavP~~~-~~~~l~~~~~~~~~~~iv~Dv~S 80 (258)
T PF02153_consen 45 DADLVVLAVPVSA-IEDVLEEIAPYLKPGAIVTDVGS 80 (258)
T ss_dssp CCSEEEE-S-HHH-HHHHHHHHHCGS-TTSEEEE--S
T ss_pred CCCEEEEcCCHHH-HHHHHHHhhhhcCCCcEEEEeCC
Confidence 3566666665543 33333 23334566665554
No 446
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=30.32 E-value=1.2e+02 Score=20.76 Aligned_cols=35 Identities=29% Similarity=0.227 Sum_probs=24.2
Q ss_pred HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhc
Q 040104 4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRA 39 (105)
Q Consensus 4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~ 39 (105)
+.++++++..|..+++.+|+-+.-+ ...+++.++.
T Consensus 175 ~~v~~~re~~g~~~~l~~DaN~~~~-~~~A~~~~~~ 209 (368)
T TIGR02534 175 AHVVAIAKALGDRASVRVDVNAAWD-ERTALHYLPQ 209 (368)
T ss_pred HHHHHHHHhcCCCcEEEEECCCCCC-HHHHHHHHHH
Confidence 3456677777778899999877655 5666665544
No 447
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=30.29 E-value=86 Score=16.54 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHc-CCCCcEEEE
Q 040104 2 IAEEVEKIDKAM-GTGIDVSFD 22 (105)
Q Consensus 2 ~~~~~~~~~~~~-~~g~d~vid 22 (105)
.++..+++.+.. ..|+|.|+-
T Consensus 27 ~d~Al~eM~e~A~~lGAnAVVG 48 (74)
T TIGR03884 27 VDEIVENLREKVKAKGGMGLIA 48 (74)
T ss_pred HHHHHHHHHHHHHHcCCCEEEE
Confidence 455566666655 457887775
No 448
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=30.29 E-value=48 Score=23.84 Aligned_cols=20 Identities=20% Similarity=0.390 Sum_probs=15.3
Q ss_pred HHHHHHHhhhcCCEEEEEcC
Q 040104 29 TMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 29 ~~~~~~~~l~~~G~~v~~g~ 48 (105)
.+..++.+|++||++|-.-+
T Consensus 224 iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 224 LIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred HHHHHHHHcCCCcEEEEECC
Confidence 46788999999999854433
No 449
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=30.20 E-value=2.2e+02 Score=20.68 Aligned_cols=74 Identities=22% Similarity=0.171 Sum_probs=44.0
Q ss_pred CCcEEEEccCChHHHHHHHHhhhc---CCEEEEEcCCCCC--ccccc-hhhh--hcCeEEEEeecc-CCCHHHHHHHHHc
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRA---GGKVCLVGMGHHE--MTVPL-TPAA--AREVDVVGVFRY-KNTWPLCLEFLRS 86 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~---~G~~v~~g~~~~~--~~~~~-~~~~--~~~~~i~~~~~~-~~~~~~~~~~v~~ 86 (105)
+..+++|-+=+|..+++++..+++ +-.++++|+.+.. ..++. .... .....+..+-.. .++....++.+..
T Consensus 332 ~~~v~VDyAHnPd~le~~L~~~~~~~~g~li~VfG~gGDrD~~kr~~mg~ia~~~ad~vivt~dnpR~edp~~i~~~i~~ 411 (475)
T COG0769 332 GKLVIVDYAHNPDGLEKALRAVRLHAAGRLIVVFGCGGDRDKSKRPDMGAIAEQLADIVIVTSDNPRSEDPAVILADILA 411 (475)
T ss_pred CCeEEEEeccChHHHHHHHHHHHhhcCCcEEEEECccCCCCcccccchHHHHHhcCCcEEEcCCCCCCcCHHHHHHHHHh
Confidence 577999999999999999999984 4455666765432 22222 2222 223333333233 5566666666666
Q ss_pred CCC
Q 040104 87 GKI 89 (105)
Q Consensus 87 g~i 89 (105)
|-.
T Consensus 412 g~~ 414 (475)
T COG0769 412 GIE 414 (475)
T ss_pred ccC
Confidence 533
No 450
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=30.14 E-value=1e+02 Score=19.15 Aligned_cols=33 Identities=12% Similarity=-0.014 Sum_probs=21.0
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEc
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g 47 (105)
.++|+|++|..+.......-+.++..|.-.+.+
T Consensus 109 ~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~ 141 (197)
T cd01492 109 SQFDVVVATELSRAELVKINELCRKLGVKFYAT 141 (197)
T ss_pred hCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 368999999887765455555555555444443
No 451
>PRK07109 short chain dehydrogenase; Provisional
Probab=30.07 E-value=1.8e+02 Score=19.61 Aligned_cols=12 Identities=25% Similarity=0.063 Sum_probs=9.9
Q ss_pred CCCcEEEEccCC
Q 040104 15 TGIDVSFDCAGF 26 (105)
Q Consensus 15 ~g~d~vid~~g~ 26 (105)
+++|++|.++|.
T Consensus 84 g~iD~lInnAg~ 95 (334)
T PRK07109 84 GPIDTWVNNAMV 95 (334)
T ss_pred CCCCEEEECCCc
Confidence 379999999885
No 452
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=29.93 E-value=1.6e+02 Score=22.04 Aligned_cols=33 Identities=15% Similarity=0.154 Sum_probs=19.6
Q ss_pred HHHHHHHcCCCCcEEEEccCChHHHHHHHHhhh
Q 040104 6 VEKIDKAMGTGIDVSFDCAGFNKTMSTALSATR 38 (105)
Q Consensus 6 ~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~ 38 (105)
.+++.+..+..+|.+|-|+|+...+.-.+..+.
T Consensus 428 ~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~ 460 (610)
T PRK13803 428 KEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFL 460 (610)
T ss_pred HHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHh
Confidence 344433334468999999988664444443333
No 453
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=29.89 E-value=1.5e+02 Score=20.21 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=27.1
Q ss_pred CCCcEEEEccCChH-----HHHHHHHhhhcCCEEEEEcCCC
Q 040104 15 TGIDVSFDCAGFNK-----TMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 15 ~g~d~vid~~g~~~-----~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
..+|.++--.+... -+.+++..+.+||.|+++|-..
T Consensus 36 ~~~d~~l~~~pK~~~e~e~qLa~ll~~~~~g~~i~v~g~~~ 76 (300)
T COG2813 36 DDFDAVLLYWPKHKAEAEFQLAQLLARLPPGGEIVVVGEKR 76 (300)
T ss_pred CCCCEEEEEccCchHHHHHHHHHHHhhCCCCCeEEEEeccc
Confidence 36787777665533 3668899999999999998643
No 454
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.84 E-value=46 Score=22.32 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=26.4
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 49 (105)
.+|+++-++|.+..+. -+++++|..++.+|..
T Consensus 200 ~ADIvV~AvG~p~~i~--~~~vk~GavVIDvGi~ 231 (285)
T PRK14191 200 NADIVCVGVGKPDLIK--ASMVKKGAVVVDIGIN 231 (285)
T ss_pred hCCEEEEecCCCCcCC--HHHcCCCcEEEEeecc
Confidence 5899999999998433 4577999999999964
No 455
>PRK10481 hypothetical protein; Provisional
Probab=29.83 E-value=1.6e+02 Score=19.04 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=15.4
Q ss_pred CCcEEEEc----cCChHHHHHHHHhh-hcCCEEEEEcC
Q 040104 16 GIDVSFDC----AGFNKTMSTALSAT-RAGGKVCLVGM 48 (105)
Q Consensus 16 g~d~vid~----~g~~~~~~~~~~~l-~~~G~~v~~g~ 48 (105)
|++..+.+ .+.+..+..+.+.| .++.-.+++++
T Consensus 153 G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C 190 (224)
T PRK10481 153 QKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDC 190 (224)
T ss_pred CCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeC
Confidence 56655544 23332233333333 45666666654
No 456
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=29.81 E-value=1.1e+02 Score=17.84 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=13.1
Q ss_pred CCCCcEEEEccCChHHHHHHHHhh
Q 040104 14 GTGIDVSFDCAGFNKTMSTALSAT 37 (105)
Q Consensus 14 ~~g~d~vid~~g~~~~~~~~~~~l 37 (105)
+++.+++|+.+|+=......+.++
T Consensus 89 ~~~~~v~~n~TGGfK~~~~~~~~~ 112 (136)
T PF09651_consen 89 GRGYEVIFNATGGFKAEIAYLTLL 112 (136)
T ss_dssp HTT-EEEEE-SSS-HHHHHHHHHH
T ss_pred cCCCeEEEEeCCChHHHHHHHHHH
Confidence 457889999999865433333333
No 457
>PRK12747 short chain dehydrogenase; Provisional
Probab=29.81 E-value=1.5e+02 Score=18.63 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=23.2
Q ss_pred CCCcEEEEccCChH-------------------------HHHHHHHhhhcCCEEEEEcCC
Q 040104 15 TGIDVSFDCAGFNK-------------------------TMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 15 ~g~d~vid~~g~~~-------------------------~~~~~~~~l~~~G~~v~~g~~ 49 (105)
+++|++|.++|... ....++..++..|+++.++..
T Consensus 87 ~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~ 146 (252)
T PRK12747 87 TKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSA 146 (252)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCc
Confidence 37999999887421 112345556677999988753
No 458
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=29.62 E-value=37 Score=18.17 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=7.1
Q ss_pred HHHHHHHhhhcCC
Q 040104 29 TMSTALSATRAGG 41 (105)
Q Consensus 29 ~~~~~~~~l~~~G 41 (105)
.++...++++|+|
T Consensus 89 ll~~~~~~l~pgG 101 (101)
T PF13649_consen 89 LLRRIARLLRPGG 101 (101)
T ss_dssp HHHHHHHTEEEEE
T ss_pred HHHHHHHHhCCCC
Confidence 3455555555554
No 459
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=29.62 E-value=1.3e+02 Score=20.16 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=25.8
Q ss_pred HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEE
Q 040104 5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKV 43 (105)
Q Consensus 5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~ 43 (105)
..+.+++....++|.||-+.|+.. +++....|...+.-
T Consensus 47 a~~~a~~a~~~~~D~via~GGDGT-v~evingl~~~~~~ 84 (301)
T COG1597 47 AIEIAREAAVEGYDTVIAAGGDGT-VNEVANGLAGTDDP 84 (301)
T ss_pred HHHHHHHHHhcCCCEEEEecCcch-HHHHHHHHhcCCCC
Confidence 344455554458999998888876 78777777666443
No 460
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=29.50 E-value=86 Score=16.87 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=22.4
Q ss_pred HHHHHHHHHcC-CCC-cEEEEccCChH-------HHHHHHHhh-hcCCEEEEEcCC
Q 040104 4 EEVEKIDKAMG-TGI-DVSFDCAGFNK-------TMSTALSAT-RAGGKVCLVGMG 49 (105)
Q Consensus 4 ~~~~~~~~~~~-~g~-d~vid~~g~~~-------~~~~~~~~l-~~~G~~v~~g~~ 49 (105)
.+.+.+.+... .+. .+++|+.+.+. .+...++.+ +.|+++...|..
T Consensus 25 ~~~~~l~~~~~~~~~~~vilDls~v~~iDssgi~~L~~~~~~~~~~g~~l~l~~~~ 80 (106)
T TIGR02886 25 RVRRKIDDAIERRPIKHLILNLKNVTFMDSSGLGVILGRYKKIKNEGGEVIVCNVS 80 (106)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCcEecchHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 34444444432 233 46777655543 133333333 456777777654
No 461
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=29.49 E-value=1.3e+02 Score=20.24 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=22.9
Q ss_pred HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhh
Q 040104 5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATR 38 (105)
Q Consensus 5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~ 38 (105)
.++++++..|..+++.+|+-++-. ..++.+.++
T Consensus 152 ~v~air~~~g~~~~l~vDaN~~w~-~~~A~~~~~ 184 (320)
T PRK02714 152 IFEQLLERLPAGAKLRLDANGGLS-LEEAKRWLQ 184 (320)
T ss_pred HHHHHHHhcCCCCEEEEECCCCCC-HHHHHHHHH
Confidence 356667766778899999887765 566655544
No 462
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.29 E-value=55 Score=22.09 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=27.4
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
.+|++|-++|.+..+ --+++++|..++.+|...
T Consensus 201 ~ADIvIsAvGkp~~i--~~~~ik~gavVIDvGin~ 233 (297)
T PRK14186 201 EADILVAAAGRPNLI--GAEMVKPGAVVVDVGIHR 233 (297)
T ss_pred hCCEEEEccCCcCcc--CHHHcCCCCEEEEecccc
Confidence 589999999999833 367899999999999653
No 463
>PRK06182 short chain dehydrogenase; Validated
Probab=29.20 E-value=1.6e+02 Score=18.81 Aligned_cols=12 Identities=42% Similarity=0.625 Sum_probs=10.1
Q ss_pred CCCcEEEEccCC
Q 040104 15 TGIDVSFDCAGF 26 (105)
Q Consensus 15 ~g~d~vid~~g~ 26 (105)
+++|++|.+.|.
T Consensus 73 ~~id~li~~ag~ 84 (273)
T PRK06182 73 GRIDVLVNNAGY 84 (273)
T ss_pred CCCCEEEECCCc
Confidence 479999999874
No 464
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=29.05 E-value=48 Score=23.06 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=27.6
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCC
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 49 (105)
+.+|++|-++|.+.. ---+++++|..++.+|..
T Consensus 273 r~ADIVIsAvGkp~~--i~~d~vK~GAvVIDVGIn 305 (364)
T PLN02616 273 READIIISAVGQPNM--VRGSWIKPGAVVIDVGIN 305 (364)
T ss_pred hhCCEEEEcCCCcCc--CCHHHcCCCCEEEecccc
Confidence 368999999999983 336789999999999964
No 465
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=29.04 E-value=54 Score=22.56 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=17.3
Q ss_pred HHHHHHHhhhcCCEEEEEcCC
Q 040104 29 TMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 29 ~~~~~~~~l~~~G~~v~~g~~ 49 (105)
.+..++.++++||+++-.-++
T Consensus 270 iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 270 ILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred HHHHHHHhcCCCCEEEEEccC
Confidence 478899999999999876553
No 466
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=29.01 E-value=1.3e+02 Score=18.14 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=11.6
Q ss_pred CCCcEEEEccCChHHHHHHHHhhh
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATR 38 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~ 38 (105)
.+++++|-+.|...++.-.+..+.
T Consensus 54 ~~~~viIa~AG~~a~Lpgvva~~t 77 (150)
T PF00731_consen 54 RGADVIIAVAGMSAALPGVVASLT 77 (150)
T ss_dssp TTESEEEEEEESS--HHHHHHHHS
T ss_pred CCCEEEEEECCCcccchhhheecc
Confidence 455666655555554544444444
No 467
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=28.96 E-value=1.3e+02 Score=20.50 Aligned_cols=34 Identities=35% Similarity=0.325 Sum_probs=23.0
Q ss_pred HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhc
Q 040104 5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRA 39 (105)
Q Consensus 5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~ 39 (105)
.++++++..|..+++.+|+-+.-+ ...+++.++.
T Consensus 177 ~v~avr~~~g~~~~l~iDaN~~~~-~~~A~~~~~~ 210 (365)
T cd03318 177 HVEAIAKALGDRASVRVDVNQAWD-ESTAIRALPR 210 (365)
T ss_pred HHHHHHHHcCCCcEEEEECCCCCC-HHHHHHHHHH
Confidence 345666666767899999987765 5666655444
No 468
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=28.91 E-value=2.3e+02 Score=20.55 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=22.1
Q ss_pred CCCCcE-EEEccCChH-------HHHHHHHhhhcCCEEEEEcC
Q 040104 14 GTGIDV-SFDCAGFNK-------TMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 14 ~~g~d~-vid~~g~~~-------~~~~~~~~l~~~G~~v~~g~ 48 (105)
..++|+ ++|++|... -+.+.-+.++|.-++.++-.
T Consensus 180 ~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDa 222 (451)
T COG0541 180 EEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDA 222 (451)
T ss_pred HcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEec
Confidence 457885 458888754 13445566778777776643
No 469
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=28.90 E-value=1.4e+02 Score=23.20 Aligned_cols=42 Identities=17% Similarity=0.317 Sum_probs=32.1
Q ss_pred HHHHHcCCCCc-EEEEccCC--hHHHHHHHHhhhcCCEEEEEcCC
Q 040104 8 KIDKAMGTGID-VSFDCAGF--NKTMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 8 ~~~~~~~~g~d-~vid~~g~--~~~~~~~~~~l~~~G~~v~~g~~ 49 (105)
+...+.|.-+| +|+|...+ +..+....+.++-||.++++..+
T Consensus 84 ~se~iLG~t~~~~VlD~~~~l~pn~lar~v~TvrgGG~lvil~p~ 128 (758)
T COG1444 84 ESERILGRTFDLLVLDLTEGLDPNALARLVGTVRGGGLLVLLLPP 128 (758)
T ss_pred HHHHHhchhhheEEEecccCCCHHHHHHHHhheecceEEEEEcCc
Confidence 34445576676 57788776 66788999999999999999754
No 470
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=28.70 E-value=61 Score=21.90 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=27.4
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
+.+|+++-++|.+..+. -+++++|..++.+|...
T Consensus 209 ~~ADIvv~AvGk~~~i~--~~~vk~gavVIDvGin~ 242 (299)
T PLN02516 209 READIVIAAAGQAMMIK--GDWIKPGAAVIDVGTNA 242 (299)
T ss_pred hhCCEEEEcCCCcCccC--HHHcCCCCEEEEeeccc
Confidence 36899999999987333 67899999999999643
No 471
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=28.42 E-value=63 Score=21.88 Aligned_cols=31 Identities=13% Similarity=0.142 Sum_probs=22.9
Q ss_pred CCcEEEEc-----cCCh-HHHHHHHHhhhcCCEEEEE
Q 040104 16 GIDVSFDC-----AGFN-KTMSTALSATRAGGKVCLV 46 (105)
Q Consensus 16 g~d~vid~-----~g~~-~~~~~~~~~l~~~G~~v~~ 46 (105)
.+|+|+-. ..++ ..+.+..++|++||++++-
T Consensus 188 ~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 188 AFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred CcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEE
Confidence 67887753 1233 3588999999999999864
No 472
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.39 E-value=55 Score=21.91 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=27.0
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 49 (105)
.+|+++-++|.+..+ --+++++|..++.+|..
T Consensus 200 ~ADIvV~AvGkp~~i--~~~~vk~gavvIDvGin 231 (281)
T PRK14183 200 KADIVIVGVGKPNLI--TEDMVKEGAIVIDIGIN 231 (281)
T ss_pred hCCEEEEecCccccc--CHHHcCCCcEEEEeecc
Confidence 689999999999843 36789999999999964
No 473
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=28.36 E-value=1.3e+02 Score=20.68 Aligned_cols=36 Identities=11% Similarity=0.031 Sum_probs=25.6
Q ss_pred HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcC
Q 040104 4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG 40 (105)
Q Consensus 4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~ 40 (105)
+.++++++..|.++++.+|+-+.-+ .++++..++.-
T Consensus 151 ~~v~avre~~G~~~~l~vDaN~~w~-~~~A~~~~~~l 186 (361)
T cd03322 151 KLFEAVREKFGFEFHLLHDVHHRLT-PNQAARFGKDV 186 (361)
T ss_pred HHHHHHHhccCCCceEEEECCCCCC-HHHHHHHHHHh
Confidence 3456777777778899999877665 67777766654
No 474
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=28.22 E-value=1.8e+02 Score=23.22 Aligned_cols=55 Identities=9% Similarity=0.027 Sum_probs=35.9
Q ss_pred HHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeeccCCCHHHHHHHHHcCCC
Q 040104 28 KTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKI 89 (105)
Q Consensus 28 ~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~g~i 89 (105)
+.++...++|+.|.+++.+-+..++...+ .++++.++.. .-.+.+++.-|.++.+
T Consensus 337 SSleaYar~LrMGCRCIELDCWdGpd~~p---vIyHG~T~Tt----KIkf~DVlhtIkdhAF 391 (1267)
T KOG1264|consen 337 SSLEAYARCLRMGCRCIELDCWDGPDGKP---VIYHGHTRTT----KIKFDDVLHTIKDHAF 391 (1267)
T ss_pred cCHHHHHHHHHhCCeEEEeecccCCCCCc---eEEeccceee----eeehHHHHHHHHhhce
Confidence 35889999999999999998876653333 3444444432 2345566666666544
No 475
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=28.18 E-value=1.9e+02 Score=20.10 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=21.0
Q ss_pred CCCcEEEEccCChHHHHHHHHhhh--cCCEEEEEc
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATR--AGGKVCLVG 47 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~--~~G~~v~~g 47 (105)
.+.++++|-+|++..+..++.+.+ .+-.+.-+.
T Consensus 69 ~~~~v~vDiTGGTK~Msaglalaa~~~~~~~~YV~ 103 (379)
T PF09670_consen 69 PGHEVAVDITGGTKSMSAGLALAAIELGVELSYVD 103 (379)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 357899999999887665544443 334444443
No 476
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.14 E-value=57 Score=21.85 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=27.4
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
.+|++|-++|.+. + ---+++++|..++.+|...
T Consensus 200 ~ADIvI~AvG~~~-~-i~~~~vk~GavVIDvGin~ 232 (284)
T PRK14170 200 EADILVVATGLAK-F-VKKDYIKPGAIVIDVGMDR 232 (284)
T ss_pred hCCEEEEecCCcC-c-cCHHHcCCCCEEEEccCcc
Confidence 5899999999998 3 3367899999999999653
No 477
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=28.11 E-value=1.2e+02 Score=18.92 Aligned_cols=13 Identities=8% Similarity=0.107 Sum_probs=11.2
Q ss_pred CCcEEEEccCChH
Q 040104 16 GIDVSFDCAGFNK 28 (105)
Q Consensus 16 g~d~vid~~g~~~ 28 (105)
++|+||||+.+..
T Consensus 110 ~~DlVi~a~Dn~~ 122 (200)
T TIGR02354 110 DADIVCEAFDNAE 122 (200)
T ss_pred CCCEEEECCCCHH
Confidence 6899999988766
No 478
>PRK12742 oxidoreductase; Provisional
Probab=27.91 E-value=1.5e+02 Score=18.23 Aligned_cols=12 Identities=25% Similarity=0.371 Sum_probs=9.9
Q ss_pred CCCcEEEEccCC
Q 040104 15 TGIDVSFDCAGF 26 (105)
Q Consensus 15 ~g~d~vid~~g~ 26 (105)
+++|++|.++|.
T Consensus 74 ~~id~li~~ag~ 85 (237)
T PRK12742 74 GALDILVVNAGI 85 (237)
T ss_pred CCCcEEEECCCC
Confidence 469999999875
No 479
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=27.86 E-value=1.2e+02 Score=20.31 Aligned_cols=14 Identities=21% Similarity=0.245 Sum_probs=12.0
Q ss_pred CCcEEEEccCChHH
Q 040104 16 GIDVSFDCAGFNKT 29 (105)
Q Consensus 16 g~d~vid~~g~~~~ 29 (105)
.+|+||.|++.+..
T Consensus 238 ~aDvVi~at~~~~~ 251 (311)
T cd05213 238 EADVVISATGAPHY 251 (311)
T ss_pred cCCEEEECCCCCch
Confidence 58999999998874
No 480
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.82 E-value=55 Score=21.94 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=27.5
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
.+|++|-++|.+. + ---+++++|..++.+|...
T Consensus 203 ~ADIvV~AvGkp~-~-i~~~~ik~GavVIDvGin~ 235 (284)
T PRK14193 203 RADIIVAAAGVAH-L-VTADMVKPGAAVLDVGVSR 235 (284)
T ss_pred hCCEEEEecCCcC-c-cCHHHcCCCCEEEEccccc
Confidence 5899999999998 3 3367899999999999653
No 481
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=27.81 E-value=90 Score=22.03 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=16.6
Q ss_pred HHHHHHcCCCCcEEEEccCChH
Q 040104 7 EKIDKAMGTGIDVSFDCAGFNK 28 (105)
Q Consensus 7 ~~~~~~~~~g~d~vid~~g~~~ 28 (105)
.+..+..++-.|+++-|+|+.+
T Consensus 282 ~Q~me~~g~~PD~vvaCvGGGS 303 (477)
T KOG1395|consen 282 IQQMEKFGKLPDAVVACVGGGS 303 (477)
T ss_pred HHHHHHhCCCCCeEEEeccCCC
Confidence 4445555778999999998865
No 482
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=27.68 E-value=1.8e+02 Score=19.30 Aligned_cols=37 Identities=8% Similarity=0.301 Sum_probs=25.7
Q ss_pred HHHHHHHHHc-CCCCcEEEEc-cCChHHHHHHHHhhhcC
Q 040104 4 EEVEKIDKAM-GTGIDVSFDC-AGFNKTMSTALSATRAG 40 (105)
Q Consensus 4 ~~~~~~~~~~-~~g~d~vid~-~g~~~~~~~~~~~l~~~ 40 (105)
.+.++++++. ..+.+.++.| +.+.+.+...+.-+++.
T Consensus 43 ~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~~~ 81 (259)
T COG0623 43 RLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIKKK 81 (259)
T ss_pred HHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHHHh
Confidence 4556677776 3467888887 56666688888877663
No 483
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=27.57 E-value=2e+02 Score=20.38 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=25.1
Q ss_pred CCCCcEEEEccCCh------------HHHHHHHHhhhcCCEEEEEc
Q 040104 14 GTGIDVSFDCAGFN------------KTMSTALSATRAGGKVCLVG 47 (105)
Q Consensus 14 ~~g~d~vid~~g~~------------~~~~~~~~~l~~~G~~v~~g 47 (105)
++.+|.|+-..+.| ..+..+.++|++||++....
T Consensus 190 ~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 190 SNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 34678777655543 45888999999999988764
No 484
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.56 E-value=62 Score=21.75 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=27.2
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
.+|++|-++|.+..+. -+++++|..++.+|...
T Consensus 202 ~ADIvV~AvGkp~~i~--~~~vk~GavVIDvGin~ 234 (288)
T PRK14171 202 KADIVVAAIGSPLKLT--AEYFNPESIVIDVGINR 234 (288)
T ss_pred hCCEEEEccCCCCccC--HHHcCCCCEEEEeeccc
Confidence 5899999999987333 57899999999999643
No 485
>PRK05965 hypothetical protein; Provisional
Probab=27.53 E-value=1.8e+02 Score=20.74 Aligned_cols=36 Identities=11% Similarity=0.131 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhc
Q 040104 4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRA 39 (105)
Q Consensus 4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~ 39 (105)
++.+++.+.++.+.+.++=+.++.++.+.++++.+.
T Consensus 94 ~lae~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~ 129 (459)
T PRK05965 94 RLAAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRH 129 (459)
T ss_pred HHHHHHHhhCCCCcCEEEEeCChhHHHHHHHHHHHH
Confidence 456667776655666666554344448989988764
No 486
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=27.53 E-value=2e+02 Score=19.49 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=10.0
Q ss_pred CCCcEEEEccCChHHHHHHHHhhh
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATR 38 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~ 38 (105)
.|+|++.----.++.+.++.+.++
T Consensus 227 ~gaDiI~LDn~s~e~~~~av~~~~ 250 (296)
T PRK09016 227 AGADIIMLDNFTTEQMREAVKRTN 250 (296)
T ss_pred cCCCEEEeCCCChHHHHHHHHhhc
Confidence 345544422222233555555444
No 487
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=27.46 E-value=1.5e+02 Score=19.24 Aligned_cols=24 Identities=13% Similarity=0.039 Sum_probs=19.9
Q ss_pred HHHHHHHHhhhcCCEEEEEcCCCC
Q 040104 28 KTMSTALSATRAGGKVCLVGMGHH 51 (105)
Q Consensus 28 ~~~~~~~~~l~~~G~~v~~g~~~~ 51 (105)
...+...++|..|-|++.+-+..+
T Consensus 30 ss~e~Y~~aL~~GcRcvElD~wdg 53 (227)
T cd08594 30 SRVDMYARVLQAGCRCVEVDCWDG 53 (227)
T ss_pred ccHHHHHHHHHhCCcEEEEEeecC
Confidence 347889999999999999987654
No 488
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=27.45 E-value=1.9e+02 Score=20.44 Aligned_cols=36 Identities=11% Similarity=0.064 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhc
Q 040104 4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRA 39 (105)
Q Consensus 4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~ 39 (105)
++.+++.+.++.+.+.++=+..+.++.+.++++.+.
T Consensus 90 ~la~~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~ 125 (428)
T PRK07986 90 ELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQ 125 (428)
T ss_pred HHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHH
Confidence 345666666665667666554444558888888774
No 489
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.42 E-value=59 Score=21.81 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=27.6
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH 50 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~ 50 (105)
.+|++|-++|.+..+ --+++++|..++.+|...
T Consensus 198 ~ADIvIsAvGkp~~i--~~~~vk~GavVIDVGin~ 230 (287)
T PRK14173 198 RADVLVVAVGRPHLI--TPEMVRPGAVVVDVGINR 230 (287)
T ss_pred hCCEEEEecCCcCcc--CHHHcCCCCEEEEccCcc
Confidence 589999999999843 467889999999999653
No 490
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=27.02 E-value=1.5e+02 Score=20.22 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=23.4
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcC
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~ 48 (105)
.++|+||.|++...+....-.+...|-+++..+.
T Consensus 72 ~~~DvVf~a~p~~~s~~~~~~~~~~G~~VIDlsg 105 (341)
T TIGR00978 72 KDVDIVFSALPSEVAEEVEPKLAEAGKPVFSNAS 105 (341)
T ss_pred ccCCEEEEeCCHHHHHHHHHHHHHCCCEEEECCh
Confidence 4689999999987756666555565555655543
No 491
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=26.97 E-value=1.1e+02 Score=21.16 Aligned_cols=26 Identities=27% Similarity=0.059 Sum_probs=17.0
Q ss_pred CCcEEEEccCChHHHHHHHHhhhcCC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRAGG 41 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~~G 41 (105)
++|+||||+.+...-...-+++...+
T Consensus 225 ~~D~Vv~~~d~~~~r~~ln~~~~~~~ 250 (376)
T PRK08762 225 DVDVVVDGADNFPTRYLLNDACVKLG 250 (376)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHcC
Confidence 69999999998764333444444444
No 492
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=26.96 E-value=1.1e+02 Score=21.08 Aligned_cols=28 Identities=25% Similarity=0.048 Sum_probs=17.1
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCE
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGK 42 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~ 42 (105)
.++|+|+||+.+...-...-..+...+.
T Consensus 117 ~~~DvVvd~~d~~~~r~~~n~~c~~~~i 144 (355)
T PRK05597 117 RDADVILDGSDNFDTRHLASWAAARLGI 144 (355)
T ss_pred hCCCEEEECCCCHHHHHHHHHHHHHcCC
Confidence 3699999999887633223333444343
No 493
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.92 E-value=62 Score=21.86 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=27.3
Q ss_pred CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCC
Q 040104 15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG 49 (105)
Q Consensus 15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~ 49 (105)
+.+|++|-++|.+..+ --+++++|..++.+|..
T Consensus 207 ~~ADIvVsAvGkp~~i--~~~~ik~gavVIDvGin 239 (297)
T PRK14168 207 QRADILIVAAGVPNLV--KPEWIKPGATVIDVGVN 239 (297)
T ss_pred hhCCEEEEecCCcCcc--CHHHcCCCCEEEecCCC
Confidence 3689999999999843 36789999999999964
No 494
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.83 E-value=2.1e+02 Score=19.35 Aligned_cols=24 Identities=13% Similarity=0.153 Sum_probs=11.4
Q ss_pred cCCCCcEEE-EccCChHHHHHHHHhh
Q 040104 13 MGTGIDVSF-DCAGFNKTMSTALSAT 37 (105)
Q Consensus 13 ~~~g~d~vi-d~~g~~~~~~~~~~~l 37 (105)
...|+|++. |... ++.+.++...+
T Consensus 216 l~~gaDiI~LDnm~-~e~vk~av~~~ 240 (289)
T PRK07896 216 LAEGAELVLLDNFP-VWQTQEAVQRR 240 (289)
T ss_pred HHcCCCEEEeCCCC-HHHHHHHHHHH
Confidence 334566544 3332 33355555554
No 495
>PF11079 YqhG: Bacterial protein YqhG of unknown function; InterPro: IPR024562 This family of putative proteins appears to be restricted to Firmicutes. Their function is not known.
Probab=26.79 E-value=1.5e+02 Score=19.70 Aligned_cols=68 Identities=15% Similarity=0.079 Sum_probs=40.5
Q ss_pred ccCChHHHHHHHHhhhcCCEEEEEcC--CC-CCccccchhhhhcCeEEEEeec--------------cCCCHHHHHHHHH
Q 040104 23 CAGFNKTMSTALSATRAGGKVCLVGM--GH-HEMTVPLTPAAAREVDVVGVFR--------------YKNTWPLCLEFLR 85 (105)
Q Consensus 23 ~~g~~~~~~~~~~~l~~~G~~v~~g~--~~-~~~~~~~~~~~~~~~~i~~~~~--------------~~~~~~~~~~~v~ 85 (105)
.-|++. +.+.+..++.+|+++.+-- .. +..+.+..+++.-|.+|...+- .....+...+.+.
T Consensus 82 hfGSpR-L~QIF~sa~~~GrfvrLyE~~~~~~~~~~pL~PWL~vN~KVsy~cD~KkDel~SlGi~Li~G~ive~F~~~L~ 160 (260)
T PF11079_consen 82 HFGSPR-LHQIFQSAKKLGRFVRLYEQPPTAGGRSTPLTPWLGVNVKVSYQCDRKKDELLSLGINLISGQIVENFHERLQ 160 (260)
T ss_pred ecCChh-HHHHHHHHHhcCCEEEEEeccCCCCCCCccccceeEEeEEEEEeeccchHHHhhheeeccCCcchhhHHHHHh
Confidence 357777 9999999999999998742 11 1123444455555555543321 1344555666666
Q ss_pred cCCCCC
Q 040104 86 SGKIDI 91 (105)
Q Consensus 86 ~g~i~~ 91 (105)
.-++.+
T Consensus 161 ~~~Ltp 166 (260)
T PF11079_consen 161 GRQLTP 166 (260)
T ss_pred cCCCCC
Confidence 666644
No 496
>PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional
Probab=26.62 E-value=2.3e+02 Score=20.21 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=26.2
Q ss_pred CCcEEEEccCChHHHHHHHHhhhc---CCEEEEEcCCC
Q 040104 16 GIDVSFDCAGFNKTMSTALSATRA---GGKVCLVGMGH 50 (105)
Q Consensus 16 g~d~vid~~g~~~~~~~~~~~l~~---~G~~v~~g~~~ 50 (105)
++.+++|..-+|..+..+++.++. +-.++++|...
T Consensus 339 g~~vi~DyahNP~s~~aal~~l~~~~~~r~i~V~G~~~ 376 (481)
T PRK14022 339 GAKVFIDYAHNGDSLNKLIDVVEEHQKGKLILLLGAAG 376 (481)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhhhCCCCEEEEECCCC
Confidence 567888988888889999998863 34677778643
No 497
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=26.61 E-value=82 Score=22.22 Aligned_cols=20 Identities=10% Similarity=0.250 Sum_probs=16.3
Q ss_pred HHHHHHHhhhcCCEEEEEcC
Q 040104 29 TMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 29 ~~~~~~~~l~~~G~~v~~g~ 48 (105)
.+..++.+|++||+++..-+
T Consensus 366 iL~~a~~~lkpgG~lvystc 385 (434)
T PRK14901 366 LLESLAPLLKPGGTLVYATC 385 (434)
T ss_pred HHHHHHHhcCCCCEEEEEeC
Confidence 47889999999999986543
No 498
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=26.58 E-value=1.1e+02 Score=21.36 Aligned_cols=14 Identities=21% Similarity=0.105 Sum_probs=12.0
Q ss_pred CCcEEEEccCChHH
Q 040104 16 GIDVSFDCAGFNKT 29 (105)
Q Consensus 16 g~d~vid~~g~~~~ 29 (105)
++|+|+||+.+...
T Consensus 132 ~~D~Vvd~~d~~~~ 145 (392)
T PRK07878 132 QYDLILDGTDNFAT 145 (392)
T ss_pred cCCEEEECCCCHHH
Confidence 69999999998763
No 499
>PRK00625 shikimate kinase; Provisional
Probab=26.56 E-value=1.1e+02 Score=18.67 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=21.8
Q ss_pred cEEEEccCChHHHHHHHHhhhcCCEEEEEcC
Q 040104 18 DVSFDCAGFNKTMSTALSATRAGGKVCLVGM 48 (105)
Q Consensus 18 d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~ 48 (105)
+.||.+.|+...-...+..++.+|.++.+-.
T Consensus 74 ~~VIs~GGg~~~~~e~~~~l~~~~~Vv~L~~ 104 (173)
T PRK00625 74 PSIVALGGGTLMIEPSYAHIRNRGLLVLLSL 104 (173)
T ss_pred CeEEECCCCccCCHHHHHHHhcCCEEEEEEC
Confidence 4577777665545567888888888777743
No 500
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=26.23 E-value=1.9e+02 Score=18.81 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=28.4
Q ss_pred HHHHHHHHcCCCCcEEEEccCC--hHHHHHHHHhhhcCC--EEEEEcCCC
Q 040104 5 EVEKIDKAMGTGIDVSFDCAGF--NKTMSTALSATRAGG--KVCLVGMGH 50 (105)
Q Consensus 5 ~~~~~~~~~~~g~d~vid~~g~--~~~~~~~~~~l~~~G--~~v~~g~~~ 50 (105)
....+++....|+..++|+... ........++.+..| .+..+|.++
T Consensus 34 ~~~~~~~~~~~Gvttiv~~~~~~~~~~~~~~~~~~~~~g~~v~~~~G~hp 83 (293)
T cd00530 34 AKEELKRFRAHGGRTIVDATPPGIGRDVEKLAEVARATGVNIVAATGFYK 83 (293)
T ss_pred HHHHHHHHHHcCCCeEEEcCCcccCcCHHHHHHHHHHhCCcEEEecccCC
Confidence 3344555545689999997753 223666777776665 555667654
Done!