Your job contains 1 sequence.
>040106
MAHTQTNVRTKERKKKKKRFLREGKREEVCVWIDKLSEIPFPSQDKDSAVKFAGRGLAMA
EHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGV
DAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQA
AAALHALQGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDLRN
KLFGRYRRRSRSRSFSPIPHLRSRHRRDGDRDYRRSYRDRDYERSRRTHSRSSTSSRSRT
PVREGSEERRAKIEQWNREREENQ
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 040106
(324 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2196929 - symbol:ATU2AF35A species:3702 "Arabi... 889 5.3e-98 2
TAIR|locus:2165447 - symbol:U2AF35B species:3702 "Arabido... 865 2.3e-95 2
GENEDB_PFALCIPARUM|PF11_0200 - symbol:PF11_0200 "U2 snRNP... 572 1.3e-61 2
UNIPROTKB|Q8IIH4 - symbol:PF11_0200 "U2 snRNP auxiliary f... 572 1.3e-61 2
UNIPROTKB|F1PUP0 - symbol:U2AF1 "Uncharacterized protein"... 598 3.2e-58 1
UNIPROTKB|Q98SE2 - symbol:U2AF1 "U2snRNP auxiliary factor... 594 8.4e-58 1
UNIPROTKB|A1A4K8 - symbol:U2AF1 "Splicing factor U2AF 35 ... 594 8.4e-58 1
UNIPROTKB|J9P492 - symbol:U2AF1 "Uncharacterized protein"... 594 8.4e-58 1
UNIPROTKB|Q01081 - symbol:U2AF1 "Splicing factor U2AF 35 ... 594 8.4e-58 1
MGI|MGI:98884 - symbol:U2af1 "U2 small nuclear ribonucleo... 594 8.4e-58 1
UNIPROTKB|Q3T127 - symbol:U2AF1L4 "Splicing factor U2AF 2... 589 2.8e-57 1
DICTYBASE|DDB_G0285077 - symbol:u2af1 "CCHC-type zinc fin... 587 4.6e-57 1
ZFIN|ZDB-GENE-020419-1 - symbol:u2af1 "U2(RNU2) small nuc... 587 4.6e-57 1
UNIPROTKB|F1PU17 - symbol:U2AF1L4 "Uncharacterized protei... 585 7.5e-57 1
UNIPROTKB|F1RM65 - symbol:U2AF1L4 "Uncharacterized protei... 585 7.5e-57 1
MGI|MGI:2678374 - symbol:U2af1l4 "U2 small nuclear RNA au... 585 7.5e-57 1
RGD|1305600 - symbol:U2af1l4 "U2 small nuclear RNA auxili... 585 7.5e-57 1
FB|FBgn0017457 - symbol:U2af38 "U2 small nuclear riboprot... 578 4.2e-56 1
UNIPROTKB|Q8WU68 - symbol:U2AF1L4 "Splicing factor U2AF 2... 569 3.7e-55 1
WB|WBGene00006698 - symbol:uaf-2 species:6239 "Caenorhabd... 538 7.2e-52 1
POMBASE|SPAP8A3.06 - symbol:SPAP8A3.06 "U2AF small subuni... 517 1.2e-49 1
ASPGD|ASPL0000060533 - symbol:AN9362 species:162425 "Emer... 494 3.3e-47 1
UNIPROTKB|G4MRL7 - symbol:MGG_09948 "Splicing factor U2AF... 494 3.3e-47 1
CGD|CAL0004873 - symbol:TRY2 species:5476 "Candida albica... 240 2.6e-33 2
UNIPROTKB|Q59LX5 - symbol:UAF21 "Potential spliceosomal U... 240 2.6e-33 2
UNIPROTKB|G3MYL6 - symbol:ZRSR2Y "Uncharacterized protein... 362 3.2e-33 1
UNIPROTKB|Q15695 - symbol:ZRSR1 "U2 small nuclear ribonuc... 354 2.3e-32 1
UNIPROTKB|Q15696 - symbol:ZRSR2 "U2 small nuclear ribonuc... 354 2.3e-32 1
UNIPROTKB|F1NHR6 - symbol:ZRSR2 "Uncharacterized protein"... 353 2.9e-32 1
UNIPROTKB|F1N5D0 - symbol:ZRSR2 "Uncharacterized protein"... 351 4.7e-32 1
UNIPROTKB|F1PIC2 - symbol:F1PIC2 "Uncharacterized protein... 348 9.8e-32 1
MGI|MGI:103287 - symbol:Zrsr2 "zinc finger (CCCH type), R... 348 9.8e-32 1
UNIPROTKB|I3LF64 - symbol:ZRSR2 "Uncharacterized protein"... 347 1.3e-31 1
CGD|CAL0000603 - symbol:orf19.53 species:5476 "Candida al... 219 3.9e-31 2
RGD|1559763 - symbol:Zrsr2 "zinc finger (CCCH type), RNA ... 345 4.5e-31 1
ZFIN|ZDB-GENE-030131-1495 - symbol:zrsr2 "zinc finger (CC... 332 2.7e-29 1
UNIPROTKB|I3LMZ7 - symbol:LOC100624937 "Uncharacterized p... 324 3.4e-29 1
TAIR|locus:2012843 - symbol:AT1G10320 species:3702 "Arabi... 331 5.7e-29 1
MGI|MGI:98885 - symbol:Zrsr1 "zinc finger (CCCH type), RN... 315 3.1e-28 1
RGD|1561824 - symbol:Zrsr1 "zinc finger (CCCH type), RNA ... 315 3.1e-28 1
UNIPROTKB|F1PT19 - symbol:F1PT19 "Uncharacterized protein... 312 6.4e-28 1
UNIPROTKB|Q29350 - symbol:U2AF1 "Splicing factor U2AF 35 ... 277 3.3e-24 1
TAIR|locus:1006230269 - symbol:AT3G44785 species:3702 "Ar... 255 7.0e-22 1
UNIPROTKB|Q98TR0 - symbol:U2AF1 "U2snRNP auxiliary factor... 219 4.6e-18 1
FB|FBgn0031628 - symbol:CG3294 species:7227 "Drosophila m... 213 9.9e-17 1
>TAIR|locus:2196929 [details] [associations]
symbol:ATU2AF35A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0048573
"photoperiodism, flowering" evidence=RCA;IMP] [GO:0007067 "mitosis"
evidence=RCA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR009145 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00642
PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AC012375 GO:GO:0048573 HSSP:Q01081 PANTHER:PTHR12620
EMBL:AC005916 eggNOG:NOG323920 HOGENOM:HOG000178619 KO:K12836
EMBL:AF409139 EMBL:AF344324 EMBL:AY065202 EMBL:AY090343
EMBL:AY096507 EMBL:AY122894 EMBL:AY088540 IPI:IPI00530007
RefSeq:NP_174086.1 UniGene:At.20200 UniGene:At.63995
UniGene:At.67851 ProteinModelPortal:Q9S709 SMR:Q9S709 STRING:Q9S709
PaxDb:Q9S709 PRIDE:Q9S709 EnsemblPlants:AT1G27650.1 GeneID:839657
KEGG:ath:AT1G27650 GeneFarm:4543 TAIR:At1g27650 InParanoid:Q9S709
OMA:NDNGRKG PhylomeDB:Q9S709 ProtClustDB:CLSN2686618
Genevestigator:Q9S709 Uniprot:Q9S709
Length = 296
Score = 889 (318.0 bits), Expect = 5.3e-98, Sum P(2) = 5.3e-98
Identities = 159/186 (85%), Positives = 168/186 (90%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
Query: 119 GVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXX 178
GVDAQGQP+DPRKIQEHFEDF+ED+FEEL KFGEIE LN+CDNLADHMIGNVYVQF+
Sbjct: 61 GVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEED 120
Query: 179 XXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDL 238
GRFYSGRPII +FSPVTDFREATCRQ+EENNCNRGGYCNFMHVKL+ R+L
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180
Query: 239 RNKLFG 244
R KLFG
Sbjct: 181 RRKLFG 186
Score = 104 (41.7 bits), Expect = 5.3e-98, Sum P(2) = 5.3e-98
Identities = 19/22 (86%), Positives = 21/22 (95%)
Query: 303 REGSEERRAKIEQWNREREENQ 324
REGSEERRA+IEQWNREREE +
Sbjct: 271 REGSEERRARIEQWNREREEKE 292
>TAIR|locus:2165447 [details] [associations]
symbol:U2AF35B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0048573
"photoperiodism, flowering" evidence=IMP] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=RCA] [GO:0009845 "seed
germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0050826 "response to freezing" evidence=RCA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00642 PRINTS:PR01848
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0048573
EMBL:AB008264 EMBL:AB007647 HSSP:Q01081 PANTHER:PTHR12620
UniGene:At.8456 eggNOG:NOG323920 HOGENOM:HOG000178619 KO:K12836
OMA:SERHDRD ProtClustDB:CLSN2686618 EMBL:AF409140 EMBL:AY136436
EMBL:BT000219 IPI:IPI00531951 RefSeq:NP_199096.1 RefSeq:NP_974870.1
UniGene:At.25814 ProteinModelPortal:Q9FMY5 SMR:Q9FMY5 IntAct:Q9FMY5
STRING:Q9FMY5 PaxDb:Q9FMY5 PRIDE:Q9FMY5 EnsemblPlants:AT5G42820.1
EnsemblPlants:AT5G42820.2 GeneID:834293 KEGG:ath:AT5G42820
GeneFarm:4540 TAIR:At5g42820 InParanoid:Q9FMY5 PhylomeDB:Q9FMY5
Genevestigator:Q9FMY5 Uniprot:Q9FMY5
Length = 283
Score = 865 (309.6 bits), Expect = 2.3e-95, Sum P(2) = 2.3e-95
Identities = 156/186 (83%), Positives = 165/186 (88%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
Query: 119 GVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXX 178
GVD QGQP+DP KIQ+HFEDFYEDIFEEL+KFGE+E LNVCDNLADHMIGNVYV F+
Sbjct: 61 GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120
Query: 179 XXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDL 238
GRFYSGRPII +FSPVTDFREATCRQ+EEN+CNRGGYCNFMHVK I R+L
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180
Query: 239 RNKLFG 244
R KLFG
Sbjct: 181 RRKLFG 186
Score = 103 (41.3 bits), Expect = 2.3e-95, Sum P(2) = 2.3e-95
Identities = 19/21 (90%), Positives = 21/21 (100%)
Query: 302 VREGSEERRAKIEQWNREREE 322
VREGSEERRA+IEQWNRER+E
Sbjct: 261 VREGSEERRARIEQWNRERDE 281
Score = 48 (22.0 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 19/69 (27%), Positives = 31/69 (44%)
Query: 69 TEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLL--LSNMYQRPDMITPGVDAQGQP 126
T+ C Y + +C G C+ +H + IS L L Y+R G ++ +
Sbjct: 147 TDFREATCRQYEE-NSCNRGGYCNFMHVKQ-ISRELRRKLFGRYRRS--YRRGSRSRSRS 202
Query: 127 IDPRKIQEH 135
I PR+ +EH
Sbjct: 203 ISPRRKREH 211
>GENEDB_PFALCIPARUM|PF11_0200 [details] [associations]
symbol:PF11_0200 "U2 snRNP auxiliary factor,
small subunit, putative" species:5833 "Plasmodium falciparum"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0005686 "U2 snRNP" evidence=ISS] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR003954 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00361 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 GO:GO:0005686 HSSP:Q01081 PANTHER:PTHR12620
EMBL:AE014186 HOGENOM:HOG000178619 KO:K12836 RefSeq:XP_001347871.1
ProteinModelPortal:Q8IIH4 IntAct:Q8IIH4 MINT:MINT-1572548
EnsemblProtists:PF11_0200:mRNA GeneID:810747 KEGG:pfa:PF11_0200
EuPathDB:PlasmoDB:PF3D7_1119300 OMA:DFREARC ProtClustDB:CLSZ2733259
Uniprot:Q8IIH4
Length = 294
Score = 572 (206.4 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 101/188 (53%), Positives = 136/188 (72%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MAEHLA I GTE+DRVNCPF++KIGACRHGD+CSR H +P + TL++ +MY P I
Sbjct: 1 MAEHLARIIGTEEDRVNCPFFWKIGACRHGDQCSRSHYKPNCAQTLVIRHMYDNPP-IAV 59
Query: 119 GVDAQGQPIDPR---KIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFR 175
+ A+GQ ++ K +HFE+FYE++F+EL K+GEIE + VCDN+ DH+IGNVY+++
Sbjct: 60 AI-AEGQMVEDEVLDKAADHFEEFYEEVFDELMKYGEIEDMVVCDNIGDHIIGNVYIKYT 118
Query: 176 XXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIG 235
GRFY+G+P+ +E++PVTDFREA CRQF E C RGGYCNFMH+K +
Sbjct: 119 HEDYAEKAVNELNGRFYAGKPLQIEYTPVTDFREARCRQFVEGQCRRGGYCNFMHIKHVP 178
Query: 236 RDLRNKLF 243
R ++ KLF
Sbjct: 179 RTVKRKLF 186
Score = 76 (31.8 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 303 REGSEERRAKIEQWNRERE 321
RE S ERR KIE+WN+ERE
Sbjct: 258 RENSAERREKIERWNKERE 276
>UNIPROTKB|Q8IIH4 [details] [associations]
symbol:PF11_0200 "U2 snRNP auxiliary factor, small subunit,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0005686 "U2
snRNP" evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR003954 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00361 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0005686 HSSP:Q01081 PANTHER:PTHR12620 EMBL:AE014186
HOGENOM:HOG000178619 KO:K12836 RefSeq:XP_001347871.1
ProteinModelPortal:Q8IIH4 IntAct:Q8IIH4 MINT:MINT-1572548
EnsemblProtists:PF11_0200:mRNA GeneID:810747 KEGG:pfa:PF11_0200
EuPathDB:PlasmoDB:PF3D7_1119300 OMA:DFREARC ProtClustDB:CLSZ2733259
Uniprot:Q8IIH4
Length = 294
Score = 572 (206.4 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 101/188 (53%), Positives = 136/188 (72%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MAEHLA I GTE+DRVNCPF++KIGACRHGD+CSR H +P + TL++ +MY P I
Sbjct: 1 MAEHLARIIGTEEDRVNCPFFWKIGACRHGDQCSRSHYKPNCAQTLVIRHMYDNPP-IAV 59
Query: 119 GVDAQGQPIDPR---KIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFR 175
+ A+GQ ++ K +HFE+FYE++F+EL K+GEIE + VCDN+ DH+IGNVY+++
Sbjct: 60 AI-AEGQMVEDEVLDKAADHFEEFYEEVFDELMKYGEIEDMVVCDNIGDHIIGNVYIKYT 118
Query: 176 XXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIG 235
GRFY+G+P+ +E++PVTDFREA CRQF E C RGGYCNFMH+K +
Sbjct: 119 HEDYAEKAVNELNGRFYAGKPLQIEYTPVTDFREARCRQFVEGQCRRGGYCNFMHIKHVP 178
Query: 236 RDLRNKLF 243
R ++ KLF
Sbjct: 179 RTVKRKLF 186
Score = 76 (31.8 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 303 REGSEERRAKIEQWNRERE 321
RE S ERR KIE+WN+ERE
Sbjct: 258 RENSAERREKIERWNKERE 276
>UNIPROTKB|F1PUP0 [details] [associations]
symbol:U2AF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 PANTHER:PTHR12620 CTD:7307
GeneTree:ENSGT00530000063193 KO:K12836 EMBL:AAEX03016606
RefSeq:XP_003640135.1 ProteinModelPortal:F1PUP0
Ensembl:ENSCAFT00000016814 GeneID:478422 KEGG:cfa:478422
Uniprot:F1PUP0
Length = 240
Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
Identities = 104/187 (55%), Positives = 137/187 (73%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T+L+ N+Y+ P
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTILIQNIYRNPQNSAQ 60
Query: 119 GVDAQGQPIDPRKIQEHFEDFYEDIFEELS-KFGEIECLNVCDNLADHMIGNVYVQFRXX 177
D + ++QEH+++F+E++F E+ K+GE+E +NVCDNL DH++GNVYV+FR
Sbjct: 61 TADGSHCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120
Query: 178 XXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRD 237
R+++G+PI E SPVTDFREA CRQ+E C RGG+CNFMH+K I R+
Sbjct: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 180
Query: 238 LRNKLFG 244
LR +L+G
Sbjct: 181 LRRELYG 187
>UNIPROTKB|Q98SE2 [details] [associations]
symbol:U2AF1 "U2snRNP auxiliary factor small subunit"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0050733 "RS domain binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0071013 HSSP:Q01081 PANTHER:PTHR12620 CTD:7307
eggNOG:NOG323920 GeneTree:ENSGT00530000063193 HOGENOM:HOG000178619
HOVERGEN:HBG054605 KO:K12836 OMA:DRGGNND OrthoDB:EOG4MSD07
EMBL:AADN02010856 EMBL:AADN02010857 EMBL:AJ291762 EMBL:AJ291763
EMBL:AJ291764 IPI:IPI00603228 RefSeq:NP_989986.2 UniGene:Gga.4951
SMR:Q98SE2 STRING:Q98SE2 Ensembl:ENSGALT00000026115 GeneID:395370
KEGG:gga:395370 InParanoid:Q98SE2 NextBio:20815454 Uniprot:Q98SE2
Length = 237
Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
Identities = 104/187 (55%), Positives = 137/187 (73%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T+ L N+Y+ P +
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ 60
Query: 119 GVDAQGQPIDPRKIQEHFEDFYEDIFEELS-KFGEIECLNVCDNLADHMIGNVYVQFRXX 177
D + ++QEH+++F+E++F E+ K+GE+E +NVCDNL DH++GNVYV+FR
Sbjct: 61 SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120
Query: 178 XXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRD 237
R+++G+PI E SPVTDFREA CRQ+E C RGG+CNFMH+K I R+
Sbjct: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 180
Query: 238 LRNKLFG 244
LR +L+G
Sbjct: 181 LRRELYG 187
>UNIPROTKB|A1A4K8 [details] [associations]
symbol:U2AF1 "Splicing factor U2AF 35 kDa subunit"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050733 "RS domain binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR009145 InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0016607
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0071013 PANTHER:PTHR12620 EMBL:BC126638 IPI:IPI00695600
RefSeq:NP_001073737.1 UniGene:Bt.23539 ProteinModelPortal:A1A4K8
SMR:A1A4K8 STRING:A1A4K8 PRIDE:A1A4K8 Ensembl:ENSBTAT00000015465
GeneID:512680 KEGG:bta:512680 CTD:7307 eggNOG:NOG323920
GeneTree:ENSGT00530000063193 HOGENOM:HOG000178619
HOVERGEN:HBG054605 InParanoid:A1A4K8 KO:K12836 OMA:DRGGNND
OrthoDB:EOG4MSD07 NextBio:20870505 Uniprot:A1A4K8
Length = 237
Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
Identities = 104/187 (55%), Positives = 137/187 (73%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T+ L N+Y+ P +
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ 60
Query: 119 GVDAQGQPIDPRKIQEHFEDFYEDIFEELS-KFGEIECLNVCDNLADHMIGNVYVQFRXX 177
D + ++QEH+++F+E++F E+ K+GE+E +NVCDNL DH++GNVYV+FR
Sbjct: 61 SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120
Query: 178 XXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRD 237
R+++G+PI E SPVTDFREA CRQ+E C RGG+CNFMH+K I R+
Sbjct: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 180
Query: 238 LRNKLFG 244
LR +L+G
Sbjct: 181 LRRELYG 187
>UNIPROTKB|J9P492 [details] [associations]
symbol:U2AF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 PANTHER:PTHR12620 CTD:7307
GeneTree:ENSGT00530000063193 KO:K12836 OMA:DRGGNND
EMBL:AAEX03016606 GeneID:478422 KEGG:cfa:478422
RefSeq:XP_003640134.1 ProteinModelPortal:J9P492
Ensembl:ENSCAFT00000047884 Uniprot:J9P492
Length = 240
Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
Identities = 104/187 (55%), Positives = 137/187 (73%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T+ L N+Y+ P +
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ 60
Query: 119 GVDAQGQPIDPRKIQEHFEDFYEDIFEELS-KFGEIECLNVCDNLADHMIGNVYVQFRXX 177
D + ++QEH+++F+E++F E+ K+GE+E +NVCDNL DH++GNVYV+FR
Sbjct: 61 SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120
Query: 178 XXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRD 237
R+++G+PI E SPVTDFREA CRQ+E C RGG+CNFMH+K I R+
Sbjct: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 180
Query: 238 LRNKLFG 244
LR +L+G
Sbjct: 181 LRRELYG 187
>UNIPROTKB|Q01081 [details] [associations]
symbol:U2AF1 "Splicing factor U2AF 35 kDa subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0050733 "RS domain
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0015030 "Cajal body" evidence=TAS]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=TAS] [GO:0006406 "mRNA
export from nucleus" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0031124 "mRNA 3'-end processing" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR009145 InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0016607 GO:GO:0008270
Reactome:REACT_1675 Gene3D:3.30.70.330 EMBL:CH471079 GO:GO:0003723
GO:GO:0015030 GO:GO:0006406 GO:GO:0000398 GO:GO:0071013
Reactome:REACT_1788 PANTHER:PTHR12620 GO:GO:0006369 GO:GO:0031124
Reactome:REACT_78 EMBL:AP001631 EMBL:AP001748 CTD:7307
eggNOG:NOG323920 HOGENOM:HOG000178619 HOVERGEN:HBG054605 KO:K12836
OMA:DRGGNND OrthoDB:EOG4MSD07 EMBL:M96982 EMBL:AJ627978
EMBL:AF370386 EMBL:BC001177 EMBL:BC001923 IPI:IPI00005613
PIR:A46179 RefSeq:NP_001020374.1 RefSeq:NP_001020375.1
RefSeq:NP_006749.1 UniGene:Hs.365116 PDB:1JMT PDBsum:1JMT
ProteinModelPortal:Q01081 SMR:Q01081 DIP:DIP-1108N IntAct:Q01081
MINT:MINT-3024108 STRING:Q01081 PhosphoSite:Q01081 DMDM:267187
PaxDb:Q01081 PeptideAtlas:Q01081 PRIDE:Q01081 DNASU:7307
Ensembl:ENST00000291552 Ensembl:ENST00000380276
Ensembl:ENST00000398137 Ensembl:ENST00000459639
Ensembl:ENST00000464750 GeneID:7307 KEGG:hsa:7307 UCSC:uc002zcy.1
GeneCards:GC21M044513 HGNC:HGNC:12453 HPA:HPA044833 MIM:191317
neXtProt:NX_Q01081 PharmGKB:PA37103 PhylomeDB:Q01081 ChiTaRS:U2AF1
EvolutionaryTrace:Q01081 GenomeRNAi:7307 NextBio:28572
ArrayExpress:Q01081 Bgee:Q01081 CleanEx:HS_U2AF1
Genevestigator:Q01081 GermOnline:ENSG00000160201 Uniprot:Q01081
Length = 240
Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
Identities = 104/187 (55%), Positives = 137/187 (73%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T+ L N+Y+ P +
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ 60
Query: 119 GVDAQGQPIDPRKIQEHFEDFYEDIFEELS-KFGEIECLNVCDNLADHMIGNVYVQFRXX 177
D + ++QEH+++F+E++F E+ K+GE+E +NVCDNL DH++GNVYV+FR
Sbjct: 61 SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120
Query: 178 XXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRD 237
R+++G+PI E SPVTDFREA CRQ+E C RGG+CNFMH+K I R+
Sbjct: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 180
Query: 238 LRNKLFG 244
LR +L+G
Sbjct: 181 LRRELYG 187
>MGI|MGI:98884 [details] [associations]
symbol:U2af1 "U2 small nuclear ribonucleoprotein auxiliary
factor (U2AF) 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0050733 "RS domain binding"
evidence=IPI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR009145 InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
MGI:MGI:98884 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0016607 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 PANTHER:PTHR12620 CTD:7307
eggNOG:NOG323920 GeneTree:ENSGT00530000063193 HOGENOM:HOG000178619
HOVERGEN:HBG054605 KO:K12836 OrthoDB:EOG4MSD07 ChiTaRS:U2AF1
EMBL:AK008332 EMBL:AK012849 EMBL:AK088979 EMBL:AK150872
EMBL:BC002184 IPI:IPI00318548 RefSeq:NP_001157241.1
RefSeq:NP_077149.2 UniGene:Mm.379289 ProteinModelPortal:Q9D883
SMR:Q9D883 STRING:Q9D883 PaxDb:Q9D883 PRIDE:Q9D883
Ensembl:ENSMUST00000014684 GeneID:108121 KEGG:mmu:108121
InParanoid:Q9D883 NextBio:360106 Bgee:Q9D883 Genevestigator:Q9D883
GermOnline:ENSMUSG00000061613 Uniprot:Q9D883
Length = 239
Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
Identities = 104/187 (55%), Positives = 137/187 (73%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T+ L N+Y+ P +
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ 60
Query: 119 GVDAQGQPIDPRKIQEHFEDFYEDIFEELS-KFGEIECLNVCDNLADHMIGNVYVQFRXX 177
D + ++QEH+++F+E++F E+ K+GE+E +NVCDNL DH++GNVYV+FR
Sbjct: 61 SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120
Query: 178 XXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRD 237
R+++G+PI E SPVTDFREA CRQ+E C RGG+CNFMH+K I R+
Sbjct: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 180
Query: 238 LRNKLFG 244
LR +L+G
Sbjct: 181 LRRELYG 187
>UNIPROTKB|Q3T127 [details] [associations]
symbol:U2AF1L4 "Splicing factor U2AF 26 kDa subunit"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR009145 InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0016607
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 PANTHER:PTHR12620 eggNOG:NOG323920
GeneTree:ENSGT00530000063193 HOGENOM:HOG000178619
HOVERGEN:HBG054605 OrthoDB:EOG4MSD07 EMBL:BC102151 IPI:IPI00689642
RefSeq:NP_001029950.1 UniGene:Bt.13810 ProteinModelPortal:Q3T127
SMR:Q3T127 PRIDE:Q3T127 Ensembl:ENSBTAT00000032279 GeneID:615198
KEGG:bta:615198 CTD:199746 InParanoid:Q3T127 OMA:SERHDRD
NextBio:20899497 Uniprot:Q3T127
Length = 220
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 103/187 (55%), Positives = 136/187 (72%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T++L N+Y+ P
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQ 60
Query: 119 GVDAQGQPIDPRKIQEHFEDFYEDIFEELS-KFGEIECLNVCDNLADHMIGNVYVQFRXX 177
D + ++QEH+++F+E++F EL K+GEIE +NVCDNL DH++GNVYV+FR
Sbjct: 61 TADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRRE 120
Query: 178 XXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRD 237
R+++G+ + E SPVTDFRE+ CRQ+E C RGG+CNFMH++ I RD
Sbjct: 121 EDAERAVVELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRD 180
Query: 238 LRNKLFG 244
LR +L+G
Sbjct: 181 LRRQLYG 187
>DICTYBASE|DDB_G0285077 [details] [associations]
symbol:u2af1 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005686 "U2 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR003954 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00361 dictyBase:DDB_G0285077
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 EMBL:AAFI02000073 GO:GO:0003723 GO:GO:0000398
GO:GO:0005686 PANTHER:PTHR12620 eggNOG:NOG323920 KO:K12836
RefSeq:XP_639991.1 ProteinModelPortal:Q54NS6
EnsemblProtists:DDB0233354 GeneID:8624909 KEGG:ddi:DDB_G0285077
InParanoid:Q54NS6 OMA:DFTEARC Uniprot:Q54NS6
Length = 471
Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
Identities = 106/189 (56%), Positives = 137/189 (72%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MAE A+IFGTEKD+ NCPFY KIGACRHGDRCSRLHN+P +S T+LL N+YQ P +
Sbjct: 1 MAERRAAIFGTEKDQQNCPFYLKIGACRHGDRCSRLHNKPVLSQTILLPNLYQSP-ISKK 59
Query: 119 GVDAQG--QP-IDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFR 175
++A G P + ++Q+HF++FYEDI+E L+K+G+++ LNVC NL DH++GNVYV+++
Sbjct: 60 AIEAAGGQAPNLSDAELQQHFDEFYEDIYEGLAKYGQVDLLNVCANLGDHLVGNVYVKYQ 119
Query: 176 XXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIG 235
GRFY GRPII EFSPVTDF EA CRQ++ CNRGG+CNFMH+
Sbjct: 120 KEDDANESIKGLKGRFYDGRPIISEFSPVTDFTEARCRQYDIGTCNRGGFCNFMHLHNPS 179
Query: 236 RDLRNKLFG 244
+ L KLFG
Sbjct: 180 KSLYYKLFG 188
>ZFIN|ZDB-GENE-020419-1 [details] [associations]
symbol:u2af1 "U2(RNU2) small nuclear RNA auxiliary
factor 1" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 ZFIN:ZDB-GENE-020419-1
GO:GO:0005634 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 PANTHER:PTHR12620 eggNOG:NOG323920
HOGENOM:HOG000178619 HOVERGEN:HBG054605 OrthoDB:EOG4MSD07
EMBL:BC098601 IPI:IPI00501023 UniGene:Dr.18312
ProteinModelPortal:Q4G0A1 SMR:Q4G0A1 STRING:Q4G0A1
InParanoid:Q4G0A1 ArrayExpress:Q4G0A1 Uniprot:Q4G0A1
Length = 250
Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
Identities = 104/187 (55%), Positives = 136/187 (72%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T+ L N+Y+ P
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNTAQ 60
Query: 119 GVDAQGQPIDPRKIQEHFEDFYEDIFEELS-KFGEIECLNVCDNLADHMIGNVYVQFRXX 177
D D +++EH+++F+E++F E+ K+GE+E +NVCDNL DH++GNVYV+FR
Sbjct: 61 SADGLNAVSDV-EMREHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 119
Query: 178 XXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRD 237
R+++G+PI E SPVTDFREA CRQ+E C RGG+CNFMH+K I R+
Sbjct: 120 EDAEKAVINLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 179
Query: 238 LRNKLFG 244
LR +L+G
Sbjct: 180 LRRELYG 186
>UNIPROTKB|F1PU17 [details] [associations]
symbol:U2AF1L4 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 PANTHER:PTHR12620 GeneTree:ENSGT00530000063193
OMA:SERHDRD EMBL:AAEX03001009 ProteinModelPortal:F1PU17
Ensembl:ENSCAFT00000011030 Uniprot:F1PU17
Length = 220
Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
Identities = 102/187 (54%), Positives = 136/187 (72%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T++L N+Y+ P
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQ 60
Query: 119 GVDAQGQPIDPRKIQEHFEDFYEDIFEELS-KFGEIECLNVCDNLADHMIGNVYVQFRXX 177
D + ++QEH+++F+E++F EL K+GEIE +NVCDNL DH++GNVYV+FR
Sbjct: 61 TADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRRE 120
Query: 178 XXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRD 237
R+++G+ + E SPVTDFRE+ CRQ+E C RGG+CNFMH++ I R+
Sbjct: 121 EDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRN 180
Query: 238 LRNKLFG 244
LR +L+G
Sbjct: 181 LRRQLYG 187
>UNIPROTKB|F1RM65 [details] [associations]
symbol:U2AF1L4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
PANTHER:PTHR12620 GeneTree:ENSGT00530000063193 OMA:GQAVHGE
EMBL:FP243365 Ensembl:ENSSSCT00000003200 ArrayExpress:F1RM65
Uniprot:F1RM65
Length = 232
Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
Identities = 102/187 (54%), Positives = 136/187 (72%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T++L N+Y+ P
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQ 60
Query: 119 GVDAQGQPIDPRKIQEHFEDFYEDIFEELS-KFGEIECLNVCDNLADHMIGNVYVQFRXX 177
D + ++QEH+++F+E++F EL K+GEIE +NVCDNL DH++GNVYV+FR
Sbjct: 61 TADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRRE 120
Query: 178 XXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRD 237
R+++G+ + E SPVTDFRE+ CRQ+E C RGG+CNFMH++ I R+
Sbjct: 121 EDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRN 180
Query: 238 LRNKLFG 244
LR +L+G
Sbjct: 181 LRRQLYG 187
>MGI|MGI:2678374 [details] [associations]
symbol:U2af1l4 "U2 small nuclear RNA auxiliary factor 1-like
4" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 MGI:MGI:2678374 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0016607 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
HSSP:Q01081 PANTHER:PTHR12620 CleanEx:MM_U2AF1L4 eggNOG:NOG323920
GeneTree:ENSGT00530000063193 HOGENOM:HOG000178619
HOVERGEN:HBG054605 KO:K12836 OrthoDB:EOG4MSD07 CTD:199746
OMA:SERHDRD EMBL:AF419339 EMBL:AF419340 EMBL:AK160974 EMBL:BC060972
IPI:IPI00221628 RefSeq:NP_739566.1 UniGene:Mm.34790
ProteinModelPortal:Q8BGJ9 SMR:Q8BGJ9 IntAct:Q8BGJ9 STRING:Q8BGJ9
PhosphoSite:Q8BGJ9 PaxDb:Q8BGJ9 PRIDE:Q8BGJ9
Ensembl:ENSMUST00000043273 Ensembl:ENSMUST00000167042
Ensembl:ENSMUST00000171912 GeneID:233073 KEGG:mmu:233073
UCSC:uc009gfa.1 InParanoid:Q8BGJ9 NextBio:381535 Bgee:Q8BGJ9
Genevestigator:Q8BGJ9 Uniprot:Q8BGJ9
Length = 220
Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
Identities = 102/187 (54%), Positives = 136/187 (72%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T++L N+Y+ P
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQ 60
Query: 119 GVDAQGQPIDPRKIQEHFEDFYEDIFEELS-KFGEIECLNVCDNLADHMIGNVYVQFRXX 177
D + ++QEH+++F+E++F EL K+GEIE +NVCDNL DH++GNVYV+FR
Sbjct: 61 TADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRRE 120
Query: 178 XXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRD 237
R+++G+ + E SPVTDFRE+ CRQ+E C RGG+CNFMH++ I R+
Sbjct: 121 EDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRN 180
Query: 238 LRNKLFG 244
LR +L+G
Sbjct: 181 LRRQLYG 187
>RGD|1305600 [details] [associations]
symbol:U2af1l4 "U2 small nuclear RNA auxiliary factor 1-like 4"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR009145 InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
RGD:1305600 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0016607
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 HSSP:Q01081 PANTHER:PTHR12620 eggNOG:NOG323920
GeneTree:ENSGT00530000063193 HOGENOM:HOG000178619
HOVERGEN:HBG054605 KO:K12836 CTD:199746 OMA:GQAVHGE EMBL:AY325237
EMBL:AY325238 IPI:IPI00365692 IPI:IPI00382197 RefSeq:NP_001008775.1
UniGene:Rn.145185 ProteinModelPortal:Q7TP17 SMR:Q7TP17
STRING:Q7TP17 PhosphoSite:Q7TP17 PRIDE:Q7TP17
Ensembl:ENSRNOT00000038154 Ensembl:ENSRNOT00000046569 GeneID:361542
KEGG:rno:361542 UCSC:RGD:1305600 NextBio:676661
Genevestigator:Q7TP17 Uniprot:Q7TP17
Length = 220
Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
Identities = 102/187 (54%), Positives = 136/187 (72%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T++L N+Y+ P
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQ 60
Query: 119 GVDAQGQPIDPRKIQEHFEDFYEDIFEELS-KFGEIECLNVCDNLADHMIGNVYVQFRXX 177
D + ++QEH+++F+E++F EL K+GEIE +NVCDNL DH++GNVYV+FR
Sbjct: 61 TADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRRE 120
Query: 178 XXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRD 237
R+++G+ + E SPVTDFRE+ CRQ+E C RGG+CNFMH++ I R+
Sbjct: 121 EDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRN 180
Query: 238 LRNKLFG 244
LR +L+G
Sbjct: 181 LRRQLYG 187
>FB|FBgn0017457 [details] [associations]
symbol:U2af38 "U2 small nuclear riboprotein auxiliary factor
38" species:7227 "Drosophila melanogaster" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS;NAS;IMP] [GO:0005686 "U2
snRNP" evidence=NAS;TAS] [GO:0008187 "poly-pyrimidine tract
binding" evidence=NAS;IDA] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0005634 "nucleus" evidence=IC;NAS] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007052 "mitotic spindle
organization" evidence=IMP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IMP]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0007052
EMBL:AE014134 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398
GO:GO:0005686 PANTHER:PTHR12620 GO:GO:0000381 GO:GO:0008187
eggNOG:NOG323920 GeneTree:ENSGT00530000063193 KO:K12836 OMA:DRGGNND
EMBL:U67066 EMBL:AY058537 PIR:JC6125 RefSeq:NP_477208.1
UniGene:Dm.4117 ProteinModelPortal:Q94535 SMR:Q94535 DIP:DIP-23299N
IntAct:Q94535 MINT:MINT-311934 STRING:Q94535 PaxDb:Q94535
EnsemblMetazoa:FBtr0078133 EnsemblMetazoa:FBtr0333408 GeneID:33201
KEGG:dme:Dmel_CG3582 CTD:33201 FlyBase:FBgn0017457
InParanoid:Q94535 OrthoDB:EOG48GTKF PhylomeDB:Q94535 ChiTaRS:U2af38
GenomeRNAi:33201 NextBio:782394 Bgee:Q94535 GermOnline:CG3582
Uniprot:Q94535
Length = 264
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 103/188 (54%), Positives = 131/188 (69%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSR+HN+PT S T+LL N+Y P
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTVLLQNLYVNPQNSAK 60
Query: 119 GVDAQG--QPIDPRKIQEHFEDFYEDIFEELS-KFGEIECLNVCDNLADHMIGNVYVQFR 175
D + ++QEH+++F+ED+F E K+GEIE +NVCDNL DH++GNVY++FR
Sbjct: 61 SADGSHLVANVSDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFR 120
Query: 176 XXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIG 235
R++ GRP+ E SPVTDFREA CRQ+E C R G+CNFMH+K I
Sbjct: 121 NEADAEKAANDLNNRWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPIS 180
Query: 236 RDLRNKLF 243
R+LR L+
Sbjct: 181 RELRRYLY 188
>UNIPROTKB|Q8WU68 [details] [associations]
symbol:U2AF1L4 "Splicing factor U2AF 26 kDa subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR003954 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00361 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0016607 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
HSSP:Q01081 PANTHER:PTHR12620 EMBL:AD000671 CleanEx:HS_U2AF1L4
HOGENOM:HOG000178619 HOVERGEN:HBG054605 CTD:199746 EMBL:AY569437
EMBL:BC021186 IPI:IPI00102851 IPI:IPI00871981 IPI:IPI00872091
RefSeq:NP_001035515.1 RefSeq:NP_659424.2 UniGene:Hs.351558
ProteinModelPortal:Q8WU68 SMR:Q8WU68 IntAct:Q8WU68 STRING:Q8WU68
PhosphoSite:Q8WU68 DMDM:160358766 PaxDb:Q8WU68 PRIDE:Q8WU68
Ensembl:ENST00000292879 Ensembl:ENST00000378975
Ensembl:ENST00000412391 GeneID:199746 KEGG:hsa:199746
UCSC:uc002obe.3 UCSC:uc002obf.3 GeneCards:GC19M036233
HGNC:HGNC:23020 HPA:HPA046378 MIM:601080 neXtProt:NX_Q8WU68
PharmGKB:PA164742763 eggNOG:NOG252826 OMA:GQAVHGE GenomeRNAi:199746
NextBio:89722 ArrayExpress:Q8WU68 Bgee:Q8WU68 Genevestigator:Q8WU68
Uniprot:Q8WU68
Length = 220
Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
Identities = 99/187 (52%), Positives = 134/187 (71%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MAE+LASIFGTEKD+VNC FYFKIG CRHGDRCSRLHN+PT S T++L N+Y+ P
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQ 60
Query: 119 GVDAQGQPIDPRKIQEHFEDFYEDIFEELS-KFGEIECLNVCDNLADHMIGNVYVQFRXX 177
D + ++QEH++ F+E++F EL K+GEIE +NVCDNL DH++GNVYV+FR
Sbjct: 61 TADGSHCHVSDVEVQEHYDSFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRRE 120
Query: 178 XXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRD 237
R+++G+ + E SPVTDFRE+ CRQ+E C RGG+CNFMH++ I ++
Sbjct: 121 EDGERAVAELSNRWFNGQAVHGELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISQN 180
Query: 238 LRNKLFG 244
L+ +L+G
Sbjct: 181 LQRQLYG 187
>WB|WBGene00006698 [details] [associations]
symbol:uaf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0018996
"molting cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0030628 "pre-mRNA
3'-splice site binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0000166 GO:GO:0046872
GO:GO:0018996 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0040035 HSSP:Q01081 PANTHER:PTHR12620 GO:GO:0030628
EMBL:AL117204 eggNOG:NOG323920 GeneTree:ENSGT00530000063193
HOGENOM:HOG000178619 KO:K12836 PIR:T31503 RefSeq:NP_503036.1
ProteinModelPortal:Q9U2U0 SMR:Q9U2U0 DIP:DIP-26717N IntAct:Q9U2U0
MINT:MINT-1068324 STRING:Q9U2U0 PaxDb:Q9U2U0
EnsemblMetazoa:Y116A8C.35.1 EnsemblMetazoa:Y116A8C.35.2
GeneID:178489 KEGG:cel:CELE_Y116A8C.35 UCSC:Y116A8C.35 CTD:178489
WormBase:Y116A8C.35 InParanoid:Q9U2U0 OMA:XAVSDVE NextBio:901340
Uniprot:Q9U2U0
Length = 285
Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
Identities = 97/194 (50%), Positives = 135/194 (69%)
Query: 54 GRGLAMAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRP 113
G GL+ AE+LASI+GTEKD+VNC F+FK GACRHGD+CSR H+ PT SPT++L N Y P
Sbjct: 4 GDGLSGAEYLASIYGTEKDKVNCSFFFKTGACRHGDKCSRAHHTPTFSPTVVLKNFYHNP 63
Query: 114 DMITPGVDAQGQPIDPRKIQE--HFEDFYEDIFEELS-KFGEIECLNVCDNLADHMIGNV 170
+ DA + + R QE +F+DFYE++F E+ K+GE+E +NVC+N+ +HM+GNV
Sbjct: 64 VVDVRQADAFDK-VGKRNDQEQRYFDDFYEEVFVEMERKYGEVEEINVCENIGEHMVGNV 122
Query: 171 YVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMH 230
YV+F R+++G+PI E PVTDFRE+ CRQ E C++GG+CNFMH
Sbjct: 123 YVKFMKEEDAEKAKNDLNNRWFNGQPIYAELCPVTDFRESRCRQHEVTTCSKGGFCNFMH 182
Query: 231 VKLIGRDLRNKLFG 244
+K I +L ++L+G
Sbjct: 183 LKAISAELGDRLYG 196
>POMBASE|SPAP8A3.06 [details] [associations]
symbol:SPAP8A3.06 "U2AF small subunit, U2AF-23"
species:4896 "Schizosaccharomyces pombe" [GO:0000243 "commitment
complex" evidence=IDA] [GO:0000349 "generation of catalytic
spliceosome for first transesterification step" evidence=IDA]
[GO:0003723 "RNA binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005686 "U2 snRNP" evidence=TAS] [GO:0005829
"cytosol" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR003954 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00361 PomBase:SPAP8A3.06 GO:GO:0005829
EMBL:CU329670 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000243 GO:GO:0000349
GO:GO:0005686 PANTHER:PTHR12620 GO:GO:0045292 eggNOG:NOG323920
HOGENOM:HOG000178619 KO:K12836 EMBL:U48234 PIR:T39243
RefSeq:NP_594945.1 ProteinModelPortal:Q09176 SMR:Q09176
IntAct:Q09176 STRING:Q09176 EnsemblFungi:SPAP8A3.06.1
GeneID:2542482 KEGG:spo:SPAP8A3.06 OMA:HETSECQ OrthoDB:EOG476P88
NextBio:20803537 Uniprot:Q09176
Length = 216
Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
Identities = 95/174 (54%), Positives = 119/174 (68%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MA HLASI+GTE+D+VNC FY+KIGACRHG+RCSR H +P S T+L NMY+ P + P
Sbjct: 1 MASHLASIYGTEQDKVNCSFYYKIGACRHGERCSRKHVKPNFSQTILCPNMYKNP-IHEP 59
Query: 119 GVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXX 178
G+ R++ E F+ FYED+F E SK+GE+E L VCDN+ DH++GNVYV+F+
Sbjct: 60 N----GKKFTQRELAEQFDAFYEDMFCEFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYEE 115
Query: 179 XXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVK 232
R+YS RP+ E SPVTDFREA CRQ E + C RGG CNFMH K
Sbjct: 116 SAQNAIDDLNSRWYSQRPVYAELSPVTDFREACCRQHETSECQRGGLCNFMHAK 169
>ASPGD|ASPL0000060533 [details] [associations]
symbol:AN9362 species:162425 "Emericella nidulans"
[GO:0005829 "cytosol" evidence=IEA] [GO:0000243 "commitment
complex" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000349 "generation of catalytic
spliceosome for first transesterification step" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 GO:GO:0005634 GO:GO:0000166
EMBL:BN001308 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AACD01000172 PANTHER:PTHR12620 eggNOG:NOG323920
HOGENOM:HOG000178619 KO:K12836 OrthoDB:EOG476P88 OMA:NDNGRKG
RefSeq:XP_682631.1 ProteinModelPortal:Q5AQR8 STRING:Q5AQR8
EnsemblFungi:CADANIAT00001149 GeneID:2867825 KEGG:ani:AN9362.2
Uniprot:Q5AQR8
Length = 209
Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 94/184 (51%), Positives = 123/184 (66%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MA +LASIFGTE+D+VNC FY+KIGACRHGDRCSR H +P+ S T+L+ NMYQ P
Sbjct: 1 MANYLASIFGTEQDKVNCSFYYKIGACRHGDRCSRKHVKPSYSQTILMPNMYQNP----- 55
Query: 119 GVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXX 178
D + + ++P ++Q HF+ FYED++ E+ K+GE+E L VCDN DH+IGNVY +F+
Sbjct: 56 AYDPKSK-MNPSQLQNHFDAFYEDVWCEMCKYGELEELVVCDNNNDHLIGNVYARFKYEE 114
Query: 179 XXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDL 238
R+Y+ RPI E SPVTDFREA CR C RGG+CNF+H K +L
Sbjct: 115 DAQAACDALNSRWYAARPIYCELSPVTDFREACCRLNSGEGCVRGGFCNFIHRKDPSSEL 174
Query: 239 RNKL 242
+L
Sbjct: 175 DREL 178
>UNIPROTKB|G4MRL7 [details] [associations]
symbol:MGG_09948 "Splicing factor U2AF 23 kDa subunit"
species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CM001231 PANTHER:PTHR12620 KO:K12836 RefSeq:XP_003710052.1
ProteinModelPortal:G4MRL7 EnsemblFungi:MGG_09948T0 GeneID:2680918
KEGG:mgr:MGG_09948 Uniprot:G4MRL7
Length = 209
Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 96/184 (52%), Positives = 120/184 (65%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MA LASIFGTE+D+VNC FYFKIGACRHGDRCSR H +PT S T+L+ NMYQ P
Sbjct: 1 MANFLASIFGTEQDKVNCSFYFKIGACRHGDRCSRKHVKPTYSQTILMPNMYQNP----- 55
Query: 119 GVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXX 178
D + ++ ++Q HF+ FYED++ EL K+GE+E L VCDN DH+IGNVY +F+
Sbjct: 56 AYDPKNN-MNASQLQNHFDAFYEDLWCELCKYGELEELVVCDNNNDHLIGNVYARFKYED 114
Query: 179 XXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDL 238
R+Y+ RPI E SPVTDFREA CR C RGG+CNF+H K +L
Sbjct: 115 SAQKACDELNSRWYAARPIYCELSPVTDFREACCRLNSGEGCTRGGFCNFIHRKNPSEEL 174
Query: 239 RNKL 242
+L
Sbjct: 175 DREL 178
>CGD|CAL0004873 [details] [associations]
symbol:TRY2 species:5476 "Candida albicans" [GO:0044011
"single-species biofilm formation on inanimate substrate"
evidence=IMP] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0010811 "positive
regulation of cell-substrate adhesion" evidence=IMP] [GO:1900189
"positive regulation of cell adhesion involved in single-species
biofilm formation" evidence=IMP] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 CGD:CAL0004873 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0006357 GO:GO:0003723 GO:GO:0010811 GO:GO:1900189
GO:GO:0044011 EMBL:AACQ01000243 EMBL:AACQ01000242 PANTHER:PTHR12620
eggNOG:NOG323920 KO:K12836 RefSeq:XP_710731.1 RefSeq:XP_710740.1
ProteinModelPortal:Q59LX5 GeneID:3647660 GeneID:3647670
KEGG:cal:CaO19.11544 KEGG:cal:CaO19.4062 Uniprot:Q59LX5
Length = 371
Score = 240 (89.5 bits), Expect = 2.6e-33, Sum P(2) = 2.6e-33
Identities = 40/112 (35%), Positives = 66/112 (58%)
Query: 133 QEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFY 192
Q+ F+ F++DIF +SK G+I + VC+N +H+ GNVYV F ++
Sbjct: 208 QKDFDQFFQDIFVHISKLGQIRDIAVCENENNHLAGNVYVMFESAEDAYNANLQLNQEWF 267
Query: 193 SGRPIIVEFSPVTDFREATCRQFEE-NNCNRGGYCNFMHVKLIGRDLRNKLF 243
+G+P+ + SPV DF +A C ++ + ++C RG CN+MHV+L D+ L+
Sbjct: 268 NGKPVYSDLSPVNDFNDACCEEYRDYHDCQRGAMCNYMHVRLPSSDIEESLY 319
Score = 141 (54.7 bits), Expect = 2.6e-33, Sum P(2) = 2.6e-33
Identities = 24/42 (57%), Positives = 32/42 (76%)
Query: 74 VNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDM 115
V C FY KIGACRHG++CS+ H +P S T+LL+N+YQ P +
Sbjct: 20 VLCSFYSKIGACRHGEKCSKKHLKPISSRTILLANLYQNPTL 61
>UNIPROTKB|Q59LX5 [details] [associations]
symbol:UAF21 "Potential spliceosomal U2AF small subunit"
species:237561 "Candida albicans SC5314" [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0010811 "positive regulation of cell-substrate adhesion"
evidence=IMP] [GO:0044011 "single-species biofilm formation on
inanimate substrate" evidence=IMP] [GO:1900189 "positive regulation
of cell adhesion involved in single-species biofilm formation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR009145 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00642
PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
CGD:CAL0004873 GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0003723
GO:GO:0010811 GO:GO:1900189 GO:GO:0044011 EMBL:AACQ01000243
EMBL:AACQ01000242 PANTHER:PTHR12620 eggNOG:NOG323920 KO:K12836
RefSeq:XP_710731.1 RefSeq:XP_710740.1 ProteinModelPortal:Q59LX5
GeneID:3647660 GeneID:3647670 KEGG:cal:CaO19.11544
KEGG:cal:CaO19.4062 Uniprot:Q59LX5
Length = 371
Score = 240 (89.5 bits), Expect = 2.6e-33, Sum P(2) = 2.6e-33
Identities = 40/112 (35%), Positives = 66/112 (58%)
Query: 133 QEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFY 192
Q+ F+ F++DIF +SK G+I + VC+N +H+ GNVYV F ++
Sbjct: 208 QKDFDQFFQDIFVHISKLGQIRDIAVCENENNHLAGNVYVMFESAEDAYNANLQLNQEWF 267
Query: 193 SGRPIIVEFSPVTDFREATCRQFEE-NNCNRGGYCNFMHVKLIGRDLRNKLF 243
+G+P+ + SPV DF +A C ++ + ++C RG CN+MHV+L D+ L+
Sbjct: 268 NGKPVYSDLSPVNDFNDACCEEYRDYHDCQRGAMCNYMHVRLPSSDIEESLY 319
Score = 141 (54.7 bits), Expect = 2.6e-33, Sum P(2) = 2.6e-33
Identities = 24/42 (57%), Positives = 32/42 (76%)
Query: 74 VNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDM 115
V C FY KIGACRHG++CS+ H +P S T+LL+N+YQ P +
Sbjct: 20 VLCSFYSKIGACRHGEKCSKKHLKPISSRTILLANLYQNPTL 61
>UNIPROTKB|G3MYL6 [details] [associations]
symbol:ZRSR2Y "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
PANTHER:PTHR12620 GeneTree:ENSGT00530000063193 EMBL:DAAA02075512
Ensembl:ENSBTAT00000066104 Uniprot:G3MYL6
Length = 439
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 74/166 (44%), Positives = 92/166 (55%)
Query: 70 EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPID- 128
EKDR NCPFY K GACR GDRCSR HN PT SPTLL+ +M+ M G D +
Sbjct: 153 EKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCGRDDYDPDANL 212
Query: 129 ---PRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXX 185
+I + F DFY+D+ E G++ V NL H+ GNVYVQ++
Sbjct: 213 EYSEEEIYQQFLDFYDDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALS 272
Query: 186 XXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHV 231
GR+Y+GR + EF PVT + A C FE C RG YCNF+HV
Sbjct: 273 LFNGRWYAGRQLQCEFCPVTQWNMAICGLFEIQQCPRGKYCNFLHV 318
>UNIPROTKB|Q15695 [details] [associations]
symbol:ZRSR1 "U2 small nuclear ribonucleoprotein auxiliary
factor 35 kDa subunit-related protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 eggNOG:NOG304335 PANTHER:PTHR12620 UniGene:Hs.637001
HOVERGEN:HBG054605 EMBL:D49676 EMBL:U51224 EMBL:AK313576
IPI:IPI00018952 ProteinModelPortal:Q15695 SMR:Q15695 STRING:Q15695
PhosphoSite:Q15695 DMDM:2833265 PaxDb:Q15695 PRIDE:Q15695
Ensembl:ENST00000391338 UCSC:uc021ycm.1 GeneCards:GC05P112228
HGNC:HGNC:12456 HPA:HPA047500 MIM:601079 neXtProt:NX_Q15695
PharmGKB:PA37106 HOGENOM:HOG000049279 InParanoid:Q15695 OMA:HSSKSHE
OrthoDB:EOG4CNQRM PhylomeDB:Q15695 Genevestigator:Q15695
GermOnline:ENSG00000174044 Uniprot:Q15695
Length = 479
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 76/169 (44%), Positives = 95/169 (56%)
Query: 70 EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQ-------RPDMITPGVDA 122
EKDR NCPFY K GACR GDRCSR HN PT SPTLL+ +M+ R D P DA
Sbjct: 171 EKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDP--DA 228
Query: 123 QGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXX 182
+ + Q+ F DFYED+ E G++ V NL H+ GNVYVQ++
Sbjct: 229 SLEYSEEETYQQ-FLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQA 287
Query: 183 XXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHV 231
GR+Y+GR + EF PVT ++ A C FE C RG +CNF+HV
Sbjct: 288 ALSLFNGRWYAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHV 336
>UNIPROTKB|Q15696 [details] [associations]
symbol:ZRSR2 "U2 small nuclear ribonucleoprotein auxiliary
factor 35 kDa subunit-related protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0030628 "pre-mRNA 3'-splice
site binding" evidence=IDA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IDA] [GO:0000245 "spliceosomal complex assembly"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IMP]
[GO:0008380 "RNA splicing" evidence=IC] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0000245 eggNOG:NOG304335
PANTHER:PTHR12620 GO:GO:0005689 GO:GO:0030628 HOVERGEN:HBG054605
HPA:HPA047500 HOGENOM:HOG000049279 OrthoDB:EOG4CNQRM EMBL:D49677
EMBL:AC004106 EMBL:AC096510 EMBL:BC113454 EMBL:BC113480
IPI:IPI00018954 RefSeq:NP_005080.1 UniGene:Hs.171909
ProteinModelPortal:Q15696 SMR:Q15696 STRING:Q15696
PhosphoSite:Q15696 DMDM:2833266 PaxDb:Q15696 PRIDE:Q15696
DNASU:8233 Ensembl:ENST00000307771 GeneID:8233 KEGG:hsa:8233
UCSC:uc004cxg.4 CTD:8233 GeneCards:GC0XP015808 H-InvDB:HIX0017758
HGNC:HGNC:23019 MIM:300028 neXtProt:NX_Q15696 PharmGKB:PA162410930
InParanoid:Q15696 OMA:EDAFIEE PhylomeDB:Q15696 ChiTaRS:ZRSR2
GenomeRNAi:8233 NextBio:30981 ArrayExpress:Q15696 Bgee:Q15696
CleanEx:HS_ZRSR2 Genevestigator:Q15696 GermOnline:ENSG00000169249
Uniprot:Q15696
Length = 482
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 76/169 (44%), Positives = 95/169 (56%)
Query: 70 EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQ-------RPDMITPGVDA 122
EKDR NCPFY K GACR GDRCSR HN PT SPTLL+ +M+ R D P DA
Sbjct: 166 EKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDP--DA 223
Query: 123 QGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXX 182
+ + Q+ F DFYED+ E G++ V NL H+ GNVYVQ++
Sbjct: 224 SLEYSEEETYQQ-FLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQA 282
Query: 183 XXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHV 231
GR+Y+GR + EF PVT ++ A C FE C RG +CNF+HV
Sbjct: 283 ALSLFNGRWYAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHV 331
>UNIPROTKB|F1NHR6 [details] [associations]
symbol:ZRSR2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 PANTHER:PTHR12620 GeneTree:ENSGT00530000063193
OMA:EDAFIEE EMBL:AADN02011332 IPI:IPI00585296
Ensembl:ENSGALT00000026711 Uniprot:F1NHR6
Length = 459
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 75/172 (43%), Positives = 95/172 (55%)
Query: 68 GTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMY--------QRPDMITPG 119
GTEKDR NCPFY K G+CR GDRCSR HN PT S TLL+ M+ +R D T
Sbjct: 151 GTEKDRANCPFYIKTGSCRFGDRCSRKHNYPTSSKTLLVRGMFITFGMEQCRRDDYDT-- 208
Query: 120 VDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXX 179
DA + D Q+ F +FYED+ E G++ V N H+ GNVYVQ++
Sbjct: 209 -DASLEYSDEETYQQ-FLEFYEDVLPEFQNVGKVVQFKVSCNYEPHLRGNVYVQYQTEKD 266
Query: 180 XXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHV 231
GR+Y+GR + EF PVT ++ A C FE C RG +CNF+HV
Sbjct: 267 CQAALALFSGRWYAGRQLHCEFCPVTRWKTAICGLFERQKCPRGKHCNFLHV 318
>UNIPROTKB|F1N5D0 [details] [associations]
symbol:ZRSR2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
PANTHER:PTHR12620 GeneTree:ENSGT00530000063193 OMA:EDAFIEE
EMBL:DAAA02074879 IPI:IPI01017474 Ensembl:ENSBTAT00000027211
Uniprot:F1N5D0
Length = 474
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 75/169 (44%), Positives = 95/169 (56%)
Query: 70 EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQ-------RPDMITPGVDA 122
EKDR NCPFY K GACR GDRCSR HN PT SPTLL+ +M+ R D P DA
Sbjct: 175 EKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDP--DA 232
Query: 123 QGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXX 182
+ + Q+ F DFY+D+ E G++ V NL H+ GNVYVQ++
Sbjct: 233 SLEYSEEETYQQ-FLDFYDDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQA 291
Query: 183 XXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHV 231
GR+Y+GR + EF PVT ++ A C FE C RG +CNF+HV
Sbjct: 292 ALSLFNGRWYAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHV 340
>UNIPROTKB|F1PIC2 [details] [associations]
symbol:F1PIC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 PANTHER:PTHR12620 GeneTree:ENSGT00530000063193
OMA:EDAFIEE EMBL:AAEX03026161 Ensembl:ENSCAFT00000019389
Uniprot:F1PIC2
Length = 455
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 74/169 (43%), Positives = 96/169 (56%)
Query: 70 EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQ-------RPDMITPGVDA 122
EKDR NCPFY K GACR GDRCSR HN P+ SPTLL+ +M+ R D P DA
Sbjct: 165 EKDRANCPFYSKTGACRFGDRCSRKHNFPSSSPTLLIKSMFTTFGMEQCRRDDYDP--DA 222
Query: 123 QGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXX 182
+ + Q+ F DFY+D+ E G++ V NL H+ GNVYVQ++
Sbjct: 223 SLEYSEEETYQQ-FLDFYDDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQA 281
Query: 183 XXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHV 231
GR+Y+GR + EF PVT ++ A C FE + C RG +CNF+HV
Sbjct: 282 ALSLFNGRWYAGRQLQCEFCPVTRWKMAICGLFEIHQCPRGKHCNFLHV 330
>MGI|MGI:103287 [details] [associations]
symbol:Zrsr2 "zinc finger (CCCH type), RNA binding motif and
serine/arginine rich 2" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000245 "spliceosomal
complex assembly" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0030628 "pre-mRNA
3'-splice site binding" evidence=ISO] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR009145 InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
MGI:MGI:103287 GO:GO:0005730 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0000245 eggNOG:NOG304335
PANTHER:PTHR12620 GO:GO:0005689 GO:GO:0030628 HOVERGEN:HBG054605
HOGENOM:HOG000049279 ChiTaRS:ZRSR2 EMBL:D45205 IPI:IPI00828580
PIR:A57120 UniGene:Mm.426178 ProteinModelPortal:Q62377 SMR:Q62377
PhosphoSite:Q62377 PRIDE:Q62377 NextBio:302143
Genevestigator:Q62377 GermOnline:ENSMUSG00000031370 Uniprot:Q62377
Length = 462
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 73/169 (43%), Positives = 91/169 (53%)
Query: 70 EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQ-------RPDMITPGVDA 122
EKDR NCPFY K GACR GDRCSR HN PT SPTLL+ M+ R D P
Sbjct: 170 EKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKGMFTTFGMEQCRRDDYDPDSSL 229
Query: 123 QGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXX 182
+ +I + F DFY D+ E G++ V NL H+ GNVYVQ++
Sbjct: 230 E---FSEEEIYQQFLDFYYDVLPEFKSVGKVIQFKVSCNLEPHLRGNVYVQYQSEEDCQA 286
Query: 183 XXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHV 231
GR+Y+GR + EF PVT ++ A C FE C RG +CNF+HV
Sbjct: 287 AFSVFNGRWYAGRQLQCEFCPVTRWKMAICGLFEVQQCPRGKHCNFLHV 335
>UNIPROTKB|I3LF64 [details] [associations]
symbol:ZRSR2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
PANTHER:PTHR12620 GeneTree:ENSGT00530000063193 OMA:EDAFIEE
EMBL:FP102132 Ensembl:ENSSSCT00000028847 Uniprot:I3LF64
Length = 479
Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
Identities = 74/169 (43%), Positives = 94/169 (55%)
Query: 70 EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQ-------RPDMITPGVDA 122
EKDR NCPFY K GACR GDRCSR HN P SPTLL+ +M+ R D P DA
Sbjct: 173 EKDRANCPFYSKTGACRFGDRCSRKHNFPASSPTLLIKSMFTTFGMEQCRRDDYDP--DA 230
Query: 123 QGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXX 182
+ + Q+ F DFY+D+ E G++ V NL H+ GNVYVQ++
Sbjct: 231 SLEYSEEETYQQ-FLDFYDDVLPEFKNVGKVVQFKVSCNLEPHLRGNVYVQYQSEEECQA 289
Query: 183 XXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHV 231
GR+Y+GR + EF PVT ++ A C FE C RG +CNF+HV
Sbjct: 290 ALALFNGRWYAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHV 338
>CGD|CAL0000603 [details] [associations]
symbol:orf19.53 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0000243 "commitment complex"
evidence=IEA] [GO:0000349 "generation of catalytic spliceosome for
first transesterification step" evidence=IEA] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=IEA] InterPro:IPR000571
InterPro:IPR009145 InterPro:IPR012677 PRINTS:PR01848
PROSITE:PS50103 SMART:SM00356 CGD:CAL0000603 GO:GO:0005634
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
PANTHER:PTHR12620 EMBL:AACQ01000232 EMBL:AACQ01000231
eggNOG:NOG323920 RefSeq:XP_710852.1 RefSeq:XP_710864.1
ProteinModelPortal:Q59MA7 GeneID:3647530 GeneID:3647542
KEGG:cal:CaO19.53 KEGG:cal:CaO19.7714 Uniprot:Q59MA7
Length = 377
Score = 219 (82.2 bits), Expect = 3.9e-31, Sum P(2) = 3.9e-31
Identities = 39/125 (31%), Positives = 71/125 (56%)
Query: 119 GVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXX 178
G+D + +IQ+ F+ FY+DIF ++K G+I + VC+N +H+ G+VY++F
Sbjct: 201 GLDENHPVLTDEQIQKDFDLFYQDIFVHVAKLGQINDMAVCEN-ENHLSGHVYIKFNDYN 259
Query: 179 XXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDL 238
+Y+G+P+ E SPV +A C+ ++ +C+RG CN++HVK + +
Sbjct: 260 DAIAANLQLNQEWYNGKPVYSELSPVNILADAHCKSWDHGHCDRGAKCNYLHVKQPTQGI 319
Query: 239 RNKLF 243
+ L+
Sbjct: 320 KKSLW 324
Score = 146 (56.5 bits), Expect = 3.9e-31, Sum P(2) = 3.9e-31
Identities = 25/43 (58%), Positives = 32/43 (74%)
Query: 71 KDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRP 113
K V C FY KIG+CRHG+ CS+ H +PTI+ T+LL N+YQ P
Sbjct: 11 KTAVLCSFYTKIGSCRHGEECSKKHLKPTITKTILLPNLYQNP 53
>RGD|1559763 [details] [associations]
symbol:Zrsr2 "zinc finger (CCCH type), RNA binding motif and
serine/arginine rich 2" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000245
"spliceosomal complex assembly" evidence=ISO] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0030628 "pre-mRNA 3'-splice
site binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR009145 InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
RGD:1559763 GO:GO:0005730 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 PANTHER:PTHR12620
GeneTree:ENSGT00530000063193 OrthoDB:EOG4CNQRM CTD:8233
IPI:IPI00358500 RefSeq:XP_001067753.2 RefSeq:XP_217612.5
UniGene:Rn.26786 Ensembl:ENSRNOT00000045300 GeneID:302670
KEGG:rno:302670 UCSC:RGD:1559763 NextBio:649974 Uniprot:D3ZHQ8
Length = 541
Score = 345 (126.5 bits), Expect = 4.5e-31, P = 4.5e-31
Identities = 74/169 (43%), Positives = 94/169 (55%)
Query: 70 EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQ-------RPDMITPGVDA 122
EKDR NCPFY K GACR GDRCSR HN PT SPTLL+ +M+ R D P D+
Sbjct: 166 EKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDP--DS 223
Query: 123 QGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXX 182
+ + Q+ F DFY D+ E G++ V NL H+ GNVYVQ++
Sbjct: 224 SLEYSEEETYQQ-FLDFYYDVLPEFKSVGKVIQFKVSCNLEPHLRGNVYVQYQSEEDCQA 282
Query: 183 XXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHV 231
GR+Y+GR + EF PVT ++ A C FE C RG +CNF+HV
Sbjct: 283 AFSVFNGRWYAGRQLQCEFCPVTRWKMAICGLFEVQQCPRGKHCNFLHV 331
>ZFIN|ZDB-GENE-030131-1495 [details] [associations]
symbol:zrsr2 "zinc finger (CCCH type), RNA-binding
motif and serine/arginine rich 2" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR009145 InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
ZFIN:ZDB-GENE-030131-1495 GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 PANTHER:PTHR12620
GeneTree:ENSGT00530000063193 CTD:8233 EMBL:CR848805 IPI:IPI00899441
RefSeq:XP_001920562.1 UniGene:Dr.116918 UniGene:Dr.77318
Ensembl:ENSDART00000081319 GeneID:100005490 KEGG:dre:100005490
NextBio:20786710 Uniprot:E7F2A1
Length = 635
Score = 332 (121.9 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 69/173 (39%), Positives = 93/173 (53%)
Query: 67 FGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMY--------QRPDMITP 118
+GTEKD+ NCPF+ K GACR GDRCSR H+ P S TL++ M+ +R D T
Sbjct: 176 YGTEKDKANCPFFLKTGACRFGDRCSRKHDHPASSCTLMVRGMFVSFGMEQSRRDDYDT- 234
Query: 119 GVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXX 178
DA + ++ + F DFYED E G + V N H+ GNVYVQ+
Sbjct: 235 --DASLE-YSEEELHQQFLDFYEDALPEFKNAGRVVQFKVSCNFEPHLRGNVYVQYETEE 291
Query: 179 XXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHV 231
GR+Y+GR + EFSPVT ++ A C F+ C +G +CNF+HV
Sbjct: 292 QCKEAFVMFNGRWYAGRQLQCEFSPVTRWKTAICGLFDRRKCPKGKHCNFLHV 344
>UNIPROTKB|I3LMZ7 [details] [associations]
symbol:LOC100624937 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
PANTHER:PTHR12620 GeneTree:ENSGT00530000063193 EMBL:FP565155
Ensembl:ENSSSCT00000024533 OMA:VEREACS Uniprot:I3LMZ7
Length = 385
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 71/171 (41%), Positives = 93/171 (54%)
Query: 70 EKDRVNCPFYFKIGACRHGD--RCSRLHNRPTISPTLLLSNMYQ-------RPDMITPGV 120
EKDR +CPFY K GACR GD RCSR H+ P SPTLL+ +M+ R D P
Sbjct: 125 EKDRAHCPFYIKTGACRFGDKRRCSRKHSFPASSPTLLIKSMFTTFGMEQCRRDDYDP-- 182
Query: 121 DAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXXX 180
DA + + Q+ F DFY+D+ E G++ V NL H+ GNVYVQ++
Sbjct: 183 DASLEYSEEETYQQ-FLDFYDDVLPEFKNVGKVVQFKVSCNLEPHLRGNVYVQYQSEEEC 241
Query: 181 XXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHV 231
GR+Y+GR + E PVT ++ A C FE C RG +CNF+HV
Sbjct: 242 QAALSLFNGRWYAGRQLQCEICPVTQWKMAICGLFEIQQCPRGKHCNFLHV 292
>TAIR|locus:2012843 [details] [associations]
symbol:AT1G10320 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR003954 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00361 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AC005489 EMBL:AK226684 IPI:IPI00524917 RefSeq:NP_172503.1
UniGene:At.51551 HSSP:Q01081 ProteinModelPortal:Q9SY74 SMR:Q9SY74
PRIDE:Q9SY74 EnsemblPlants:AT1G10320.1 GeneID:837571
KEGG:ath:AT1G10320 GeneFarm:4542 TAIR:At1g10320 eggNOG:NOG304335
HOGENOM:HOG000083070 InParanoid:Q9SY74 OMA:CSRKHVY PhylomeDB:Q9SY74
ProtClustDB:CLSN2679568 Genevestigator:Q9SY74 PANTHER:PTHR12620
Uniprot:Q9SY74
Length = 757
Score = 331 (121.6 bits), Expect = 5.7e-29, P = 5.7e-29
Identities = 74/205 (36%), Positives = 115/205 (56%)
Query: 34 DKLSEIPFPSQDKDSA----VKFAGRGL-AMAEHLASIFGTEKDRVNCPFYFKIGACRHG 88
D+ + P P + SA V A + L ++A+ + + FGTE+D+ +CPF+ K GACR G
Sbjct: 200 DRPTSNPLPPGSEASANYQNVSSAQQILESVAQEVPN-FGTEQDKAHCPFHLKTGACRFG 258
Query: 89 DRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELS 148
RCSR+H P S TLL+ NMY P IT D +G + + +E+FYED+ E
Sbjct: 259 QRCSRVHFYPNKSCTLLMKNMYNGPG-ITWEQD-EGLEYTDEEAELCYEEFYEDVHTEFL 316
Query: 149 KFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFR 208
K+GE+ VC N + H+ GNVYV +R GR+++G+ + EF ++ ++
Sbjct: 317 KYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQSINGRYFAGKQVNCEFVNISRWK 376
Query: 209 EATCRQFEENN---CNRGGYCNFMH 230
A C ++ ++ C+RG CNF+H
Sbjct: 377 VAICGEYMKSRLKTCSRGSACNFIH 401
>MGI|MGI:98885 [details] [associations]
symbol:Zrsr1 "zinc finger (CCCH type), RNA binding motif and
serine/arginine rich 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 MGI:MGI:98885 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 eggNOG:NOG304335 PANTHER:PTHR12620
CleanEx:MM_SP2 HOVERGEN:HBG054605 HOGENOM:HOG000049279
OrthoDB:EOG4CNQRM EMBL:D17407 EMBL:S69507 EMBL:D26474
IPI:IPI00137872 PIR:S41485 RefSeq:NP_035793.1 UniGene:Mm.29542
ProteinModelPortal:Q64707 SMR:Q64707 PhosphoSite:Q64707
PRIDE:Q64707 Ensembl:ENSMUST00000049506 GeneID:22183 KEGG:mmu:22183
CTD:7310 InParanoid:Q64707 OMA:AENERIW NextBio:302139 Bgee:Q64707
Genevestigator:Q64707 GermOnline:ENSMUSG00000044068 Uniprot:Q64707
Length = 428
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 66/166 (39%), Positives = 89/166 (53%)
Query: 70 EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMIT---PGVDAQGQ- 125
EK R +CPFY K GACR G+RCSR H+ PT SPTLL+ +M+ M D+
Sbjct: 157 EKYRPSCPFYNKTGACRFGNRCSRKHDFPTSSPTLLVKSMFTTFGMEQCRRDDYDSDANL 216
Query: 126 PIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXX 185
+ + F DFY D+ E G++ V NL H+ GNVYVQ++
Sbjct: 217 EYSEEETYQQFLDFYHDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALS 276
Query: 186 XXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHV 231
GR+Y+GR + EF PVT ++ A C FE C +G +CNF+HV
Sbjct: 277 LFNGRWYAGRQLQCEFCPVTRWKVAICGLFEMQKCPKGKHCNFLHV 322
>RGD|1561824 [details] [associations]
symbol:Zrsr1 "zinc finger (CCCH type), RNA binding motif and
serine/arginine rich 1" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR009145 InterPro:IPR012677
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 RGD:1561824 GO:GO:0005634 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:NOG304335 PANTHER:PTHR12620 GeneTree:ENSGT00530000063193
HOVERGEN:HBG054605 HOGENOM:HOG000049279 OrthoDB:EOG4CNQRM CTD:7310
OMA:EDAFIEE EMBL:BC086322 IPI:IPI00205826 RefSeq:NP_001017504.1
UniGene:Rn.204453 Ensembl:ENSRNOT00000012767 GeneID:498425
KEGG:rno:498425 UCSC:RGD:1561824 InParanoid:Q5RK33 NextBio:699756
Genevestigator:Q5RK33 Uniprot:Q5RK33
Length = 428
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 66/166 (39%), Positives = 89/166 (53%)
Query: 70 EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMIT---PGVDAQGQ- 125
EK R +CPFY K GACR G+RCSR H+ PT SPTLL+ +M+ M D+
Sbjct: 158 EKYRPSCPFYNKTGACRFGNRCSRKHDFPTSSPTLLVKSMFTTFGMEQCRRDDYDSDANL 217
Query: 126 PIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXXXXX 185
+ + F DFY D+ E G++ V NL H+ GNVYVQ++
Sbjct: 218 EYSEEETYQQFLDFYHDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALS 277
Query: 186 XXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHV 231
GR+Y+GR + EF PVT ++ A C FE C +G +CNF+HV
Sbjct: 278 LFNGRWYAGRQLQCEFCPVTRWKVAICGLFEMQKCPKGKHCNFLHV 323
>UNIPROTKB|F1PT19 [details] [associations]
symbol:F1PT19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 PANTHER:PTHR12620 GeneTree:ENSGT00530000063193
EMBL:AAEX03012736 EMBL:AAEX03012735 Ensembl:ENSCAFT00000038958
OMA:REXLENG Uniprot:F1PT19
Length = 430
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 70/169 (41%), Positives = 89/169 (52%)
Query: 70 EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQ-------RPDMITPGVDA 122
E+DR +CPFY K GACR GDRCSR H+ P+ SPTLL+ +M+ R D P DA
Sbjct: 166 ERDRADCPFYRKTGACRFGDRCSRRHDLPSSSPTLLVRSMFTTFGMEQCRRDDYDP--DA 223
Query: 123 QGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRXXXXXXX 182
G +HF FY+D+ E G + V NL H+ GNVYVQ+R
Sbjct: 224 -GLEDSEEDTYQHFRAFYDDVLPEFRAVGTVVQFKVSRNLEPHLRGNVYVQYRSEAECRA 282
Query: 183 XXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHV 231
GR+Y+GR + E PVT ++ A C E C RG CNF+HV
Sbjct: 283 ALSLFNGRWYAGRRLQCELCPVTRWKAAICG-CELRRCPRGRRCNFLHV 330
>UNIPROTKB|Q29350 [details] [associations]
symbol:U2AF1 "Splicing factor U2AF 35 kDa subunit"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR009145 Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50102
PROSITE:PS50103 GO:GO:0008380 GO:GO:0046872 GO:GO:0016607
GO:GO:0008270 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
PANTHER:PTHR12620 eggNOG:NOG323920 HOGENOM:HOG000178619
OrthoDB:EOG4MSD07 EMBL:F14757 ProteinModelPortal:Q29350 SMR:Q29350
ArrayExpress:Q29350 Uniprot:Q29350
Length = 82
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 48/82 (58%), Positives = 62/82 (75%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T++L N+Y+ P
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQ 60
Query: 119 GVDAQGQPIDPRKIQEHFEDFY 140
D + ++QEH+++F+
Sbjct: 61 TADGSHCHVSDVEVQEHYDNFF 82
>TAIR|locus:1006230269 [details] [associations]
symbol:AT3G44785 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000571 InterPro:IPR009145
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50103 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0008270 GO:GO:0003723
EMBL:AC002534 PANTHER:PTHR12620 eggNOG:NOG323920 KO:K12836
IPI:IPI00522634 RefSeq:NP_974385.1 UniGene:At.65241
ProteinModelPortal:Q3EAP8 SMR:Q3EAP8 STRING:Q3EAP8
EnsemblPlants:AT3G44785.1 GeneID:2745945 KEGG:ath:AT3G44785
TAIR:At3g44785 InParanoid:Q3EAP8 PhylomeDB:Q3EAP8
Genevestigator:Q3EAP8 Uniprot:Q3EAP8
Length = 75
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 49/74 (66%), Positives = 59/74 (79%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
M EHLASI+GTEKDRVNCPFYFKIG CR+GDRCSRL+ +P+ISPTLLLSN YQ+ +
Sbjct: 1 MVEHLASIYGTEKDRVNCPFYFKIGVCRNGDRCSRLYTKPSISPTLLLSNTYQQ-GRLKQ 59
Query: 119 GVD-AQGQPIDPRK 131
+D Q + DP+K
Sbjct: 60 FLDPVQSREKDPKK 73
>UNIPROTKB|Q98TR0 [details] [associations]
symbol:U2AF1 "U2snRNP auxiliary factor small subunit
(Truncated)" species:9031 "Gallus gallus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000571 InterPro:IPR009145
Pfam:PF00642 PRINTS:PR01848 PROSITE:PS50103 GO:GO:0005634
GO:GO:0008270 GO:GO:0003723 PANTHER:PTHR12620
GeneTree:ENSGT00530000063193 EMBL:AADN02010856 EMBL:AADN02010857
UniGene:Gga.4951 EMBL:AJ291765 IPI:IPI00590217 STRING:Q98TR0
Ensembl:ENSGALT00000026114 HOGENOM:HOG000152077 HOVERGEN:HBG075276
Uniprot:Q98TR0
Length = 49
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 39/48 (81%), Positives = 43/48 (89%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLL 106
MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S +L
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQEAML 48
>FB|FBgn0031628 [details] [associations]
symbol:CG3294 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0042060 "wound healing" evidence=IMP]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR009145
InterPro:IPR012677 PRINTS:PR01848 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00360 EMBL:AE014134 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0042060 GO:GO:0000398 PANTHER:PTHR12620
GeneTree:ENSGT00530000063193 UniGene:Dm.11865 GeneID:33677
KEGG:dme:Dmel_CG3294 FlyBase:FBgn0031628 GenomeRNAi:33677
NextBio:784734 RefSeq:NP_608857.2 ProteinModelPortal:Q9VR26
SMR:Q9VR26 IntAct:Q9VR26 MINT:MINT-825396 STRING:Q9VR26
EnsemblMetazoa:FBtr0077381 UCSC:CG3294-RA InParanoid:Q9VR26
OMA:HKEYASA PhylomeDB:Q9VR26 ArrayExpress:Q9VR26 Bgee:Q9VR26
Uniprot:Q9VR26
Length = 456
Score = 213 (80.0 bits), Expect = 9.9e-17, P = 9.9e-17
Identities = 49/188 (26%), Positives = 85/188 (45%)
Query: 62 HLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDM---ITP 118
HL + T + C F+ + CR+G C+ H RP + LL+ + + + T
Sbjct: 156 HLLRVMETHPEERACEFFSRTNCCRYGHACTFNHRRPMLGRILLIRHFFNHSMLQKRCTH 215
Query: 119 GVDAQGQP---IDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFR 175
A + + + ++ +++F+ D+ EEL KFG I N +H+ G+V+V++
Sbjct: 216 KEYASAEEHLELTEQDLRHDYDEFFNDVVEELRKFGTIVNFRTVRNTLEHLRGHVFVEYT 275
Query: 176 XXXXXXXXXXXXXGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIG 235
GR+Y+ + + VEFS + +R A C C +G C ++H L G
Sbjct: 276 NERSALRAFTNLQGRYYASKRLNVEFSNLRTWRGAVCGLSLTRKCPKGNDCGYLH--LFG 333
Query: 236 RDLRNKLF 243
N LF
Sbjct: 334 NP--NNLF 339
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.140 0.442 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 324 242 0.00096 113 3 11 22 0.39 33
32 0.45 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 45
No. of states in DFA: 607 (65 KB)
Total size of DFA: 216 KB (2120 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.26u 0.13s 19.39t Elapsed: 00:00:01
Total cpu time: 19.26u 0.13s 19.39t Elapsed: 00:00:01
Start: Fri May 10 03:03:25 2013 End: Fri May 10 03:03:26 2013