BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040106
(324 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZQW8|U2AFA_ORYSJ Splicing factor U2af small subunit A OS=Oryza sativa subsp.
japonica GN=U2AF35A PE=2 SV=1
Length = 290
Score = 385 bits (989), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/289 (69%), Positives = 222/289 (76%), Gaps = 23/289 (7%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN+P++SPTLLLSNMY RPDMITP
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITP 60
Query: 119 GVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEE 178
G+DAQG PIDP KIQ FEDFYEDIFEELSK+GEIE L+VCDN ADHMIGNVYVQFREE+
Sbjct: 61 GIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREED 120
Query: 179 QAAAALHALQGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDL 238
QAA AL AL GR+YSGRPIIVEFSPV+DFREATCRQ+EEN+CNRGGYCNFMHVK IGRDL
Sbjct: 121 QAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEENSCNRGGYCNFMHVKEIGRDL 180
Query: 239 RNKLFGRYRRRSRS----RSFSPIPH---------------LRSRHRRDGDRDYRRSYRD 279
R +LFG R RS RS SP P+ + R G DY R
Sbjct: 181 RKRLFGHLHRSRRSHSHGRSRSPSPYHYRRDYDRRSSSRSRDHDDYYRGGSHDYYRGGSR 240
Query: 280 RDYERSRRTHSRSS----TSSRSRTPVREGSEERRAKIEQWNREREENQ 324
R ER R ++ SR+R+PVR+GSEERRA+IEQWNRERE Q
Sbjct: 241 RSSERHRSSYDSDGSRRRHRSRTRSPVRDGSEERRAQIEQWNREREAAQ 289
>sp|Q9FMY5|U2AFB_ARATH Splicing factor U2af small subunit B OS=Arabidopsis thaliana
GN=U2AF35B PE=2 SV=1
Length = 283
Score = 372 bits (954), Expect = e-102, Method: Compositional matrix adjust.
Identities = 207/281 (73%), Positives = 228/281 (81%), Gaps = 17/281 (6%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
Query: 119 GVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEE 178
GVD QGQP+DP KIQ+HFEDFYEDIFEEL+KFGE+E LNVCDNLADHMIGNVYV F+EE+
Sbjct: 61 GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED 120
Query: 179 QAAAALHALQGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDL 238
AAAAL ALQGRFYSGRPII +FSPVTDFREATCRQ+EEN+CNRGGYCNFMHVK I R+L
Sbjct: 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL 180
Query: 239 RNKLFGRYRRRSRSRSFSPIPHLRSRHRRDGDRDYRRS-YRDRD-YERSRRTHSRS---- 292
R KLFGRYRR R S S + R +R+ R+ R RDRD + +R+ RS
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVRDRDRHGNGKRSSDRSERHD 240
Query: 293 ---------STSSRSRTP--VREGSEERRAKIEQWNREREE 322
+ RSR+P VREGSEERRA+IEQWNRER+E
Sbjct: 241 RDGGGRRRHGSPKRSRSPRNVREGSEERRARIEQWNRERDE 281
>sp|Q6AUG0|U2AFB_ORYSJ Splicing factor U2af small subunit B OS=Oryza sativa subsp.
japonica GN=U2AF35B PE=2 SV=1
Length = 304
Score = 367 bits (941), Expect = e-101, Method: Compositional matrix adjust.
Identities = 167/185 (90%), Positives = 179/185 (96%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPT+SPT++L+NMYQRPDMITP
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITP 60
Query: 119 GVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEE 178
GVDAQGQPIDP K+QEHFEDFYEDI+EELSKFGE+E LNVCDNLADHMIGNVYVQFREEE
Sbjct: 61 GVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEE 120
Query: 179 QAAAALHALQGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDL 238
QA AA +ALQGRFYSGRPIIVE+SPVTDFREATCRQFEEN+CNRGGYCNFMHVK IGR+L
Sbjct: 121 QAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQIGREL 180
Query: 239 RNKLF 243
R KL+
Sbjct: 181 RRKLY 185
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/38 (71%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
Query: 285 SRRTHSRSSTSSRSRTPVREGSEERRAKIEQWNREREE 322
RR H S R+R+PVRE SEERRAKIEQWNREREE
Sbjct: 267 GRRRHG--SPPRRARSPVRESSEERRAKIEQWNREREE 302
>sp|Q9S709|U2AFA_ARATH Splicing factor U2af small subunit A OS=Arabidopsis thaliana
GN=U2AF35A PE=1 SV=1
Length = 296
Score = 363 bits (933), Expect = e-100, Method: Compositional matrix adjust.
Identities = 205/286 (71%), Positives = 223/286 (77%), Gaps = 28/286 (9%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP
Sbjct: 1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 60
Query: 119 GVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEE 178
GVDAQGQP+DPRKIQEHFEDF+ED+FEEL KFGEIE LN+CDNLADHMIGNVYVQF+EE+
Sbjct: 61 GVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEED 120
Query: 179 QAAAALHALQGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDL 238
QAAAAL ALQGRFYSGRPII +FSPVTDFREATCRQ+EENNCNRGGYCNFMHVKL+ R+L
Sbjct: 121 QAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKLVSREL 180
Query: 239 RNKLF--GRYRRRSRSRSFSPIPHLRSRHRRDGDR---DYRR-SYRDRDYERSRRTHSRS 292
R KLF R R SRS S + R++RD DR +R S+RDRD E R +
Sbjct: 181 RRKLFGRYRRSYRRGSRSRSRSRSISPRNKRDNDRRDPSHREFSHRDRDREFYRHGSGKR 240
Query: 293 STSSRSRTPVREGS---------------------EERRAKIEQWN 317
S S RS R+GS EERRA+IEQWN
Sbjct: 241 S-SERSERQERDGSRGRRQASPKRGGSPGGGREGSEERRARIEQWN 285
>sp|Q7TP17|U2AF4_RAT Splicing factor U2AF 26 kDa subunit OS=Rattus norvegicus GN=U2af1l4
PE=2 SV=1
Length = 220
Score = 241 bits (615), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 113/200 (56%), Positives = 149/200 (74%), Gaps = 2/200 (1%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T++L N+Y+ P
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQ 60
Query: 119 GVDAQGQPIDPRKIQEHFEDFYEDIFEELS-KFGEIECLNVCDNLADHMIGNVYVQFREE 177
D + ++QEH+++F+E++F EL K+GEIE +NVCDNL DH++GNVYV+FR E
Sbjct: 61 TADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRRE 120
Query: 178 EQAAAALHALQGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRD 237
E A A+ L R+++G+ + E SPVTDFRE+ CRQ+E C RGG+CNFMH++ I R+
Sbjct: 121 EDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRN 180
Query: 238 LRNKLFGRY-RRRSRSRSFS 256
LR +L+GR R RS RS +
Sbjct: 181 LRRQLYGRGPRHRSPPRSHT 200
>sp|Q8BGJ9|U2AF4_MOUSE Splicing factor U2AF 26 kDa subunit OS=Mus musculus GN=U2af1l4 PE=1
SV=1
Length = 220
Score = 241 bits (615), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 113/200 (56%), Positives = 149/200 (74%), Gaps = 2/200 (1%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T++L N+Y+ P
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQ 60
Query: 119 GVDAQGQPIDPRKIQEHFEDFYEDIFEELS-KFGEIECLNVCDNLADHMIGNVYVQFREE 177
D + ++QEH+++F+E++F EL K+GEIE +NVCDNL DH++GNVYV+FR E
Sbjct: 61 TADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRRE 120
Query: 178 EQAAAALHALQGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRD 237
E A A+ L R+++G+ + E SPVTDFRE+ CRQ+E C RGG+CNFMH++ I R+
Sbjct: 121 EDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRN 180
Query: 238 LRNKLFGRY-RRRSRSRSFS 256
LR +L+GR R RS RS +
Sbjct: 181 LRRQLYGRGPRHRSPPRSHT 200
>sp|Q9D883|U2AF1_MOUSE Splicing factor U2AF 35 kDa subunit OS=Mus musculus GN=U2af1 PE=1
SV=4
Length = 239
Score = 238 bits (607), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 108/186 (58%), Positives = 142/186 (76%), Gaps = 1/186 (0%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T+ L N+Y+ P +
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ 60
Query: 119 GVDAQGQPIDPRKIQEHFEDFYEDIFEELS-KFGEIECLNVCDNLADHMIGNVYVQFREE 177
D + ++QEH+++F+E++F E+ K+GE+E +NVCDNL DH++GNVYV+FR E
Sbjct: 61 SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120
Query: 178 EQAAAALHALQGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRD 237
E A A+ L R+++G+PI E SPVTDFREA CRQ+E C RGG+CNFMH+K I R+
Sbjct: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 180
Query: 238 LRNKLF 243
LR +L+
Sbjct: 181 LRRELY 186
>sp|Q01081|U2AF1_HUMAN Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1
SV=3
Length = 240
Score = 238 bits (607), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 108/186 (58%), Positives = 142/186 (76%), Gaps = 1/186 (0%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T+ L N+Y+ P +
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ 60
Query: 119 GVDAQGQPIDPRKIQEHFEDFYEDIFEELS-KFGEIECLNVCDNLADHMIGNVYVQFREE 177
D + ++QEH+++F+E++F E+ K+GE+E +NVCDNL DH++GNVYV+FR E
Sbjct: 61 SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120
Query: 178 EQAAAALHALQGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRD 237
E A A+ L R+++G+PI E SPVTDFREA CRQ+E C RGG+CNFMH+K I R+
Sbjct: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 180
Query: 238 LRNKLF 243
LR +L+
Sbjct: 181 LRRELY 186
>sp|A1A4K8|U2AF1_BOVIN Splicing factor U2AF 35 kDa subunit OS=Bos taurus GN=U2AF1 PE=2
SV=1
Length = 237
Score = 238 bits (607), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 108/186 (58%), Positives = 142/186 (76%), Gaps = 1/186 (0%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T+ L N+Y+ P +
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQ 60
Query: 119 GVDAQGQPIDPRKIQEHFEDFYEDIFEELS-KFGEIECLNVCDNLADHMIGNVYVQFREE 177
D + ++QEH+++F+E++F E+ K+GE+E +NVCDNL DH++GNVYV+FR E
Sbjct: 61 SADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRRE 120
Query: 178 EQAAAALHALQGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRD 237
E A A+ L R+++G+PI E SPVTDFREA CRQ+E C RGG+CNFMH+K I R+
Sbjct: 121 EDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE 180
Query: 238 LRNKLF 243
LR +L+
Sbjct: 181 LRRELY 186
>sp|Q3T127|U2AF4_BOVIN Splicing factor U2AF 26 kDa subunit OS=Bos taurus GN=U2AF1L4 PE=2
SV=1
Length = 220
Score = 238 bits (606), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 107/186 (57%), Positives = 141/186 (75%), Gaps = 1/186 (0%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T++L N+Y+ P
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQ 60
Query: 119 GVDAQGQPIDPRKIQEHFEDFYEDIFEELS-KFGEIECLNVCDNLADHMIGNVYVQFREE 177
D + ++QEH+++F+E++F EL K+GEIE +NVCDNL DH++GNVYV+FR E
Sbjct: 61 TADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRRE 120
Query: 178 EQAAAALHALQGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRD 237
E A A+ L R+++G+ + E SPVTDFRE+ CRQ+E C RGG+CNFMH++ I RD
Sbjct: 121 EDAERAVVELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISRD 180
Query: 238 LRNKLF 243
LR +L+
Sbjct: 181 LRRQLY 186
>sp|Q94535|U2AF1_DROME Splicing factor U2af 38 kDa subunit OS=Drosophila melanogaster
GN=U2af38 PE=1 SV=2
Length = 264
Score = 234 bits (597), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 107/188 (56%), Positives = 136/188 (72%), Gaps = 3/188 (1%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSR+HN+PT S T+LL N+Y P
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTVLLQNLYVNPQNSAK 60
Query: 119 GVDAQG--QPIDPRKIQEHFEDFYEDIFEEL-SKFGEIECLNVCDNLADHMIGNVYVQFR 175
D + ++QEH+++F+ED+F E K+GEIE +NVCDNL DH++GNVY++FR
Sbjct: 61 SADGSHLVANVSDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFR 120
Query: 176 EEEQAAAALHALQGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIG 235
E A A + L R++ GRP+ E SPVTDFREA CRQ+E C R G+CNFMH+K I
Sbjct: 121 NEADAEKAANDLNNRWFGGRPVYSELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPIS 180
Query: 236 RDLRNKLF 243
R+LR L+
Sbjct: 181 RELRRYLY 188
>sp|Q8WU68|U2AF4_HUMAN Splicing factor U2AF 26 kDa subunit OS=Homo sapiens GN=U2AF1L4 PE=1
SV=2
Length = 220
Score = 231 bits (588), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 111/210 (52%), Positives = 148/210 (70%), Gaps = 1/210 (0%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MAE+LASIFGTEKD+VNC FYFKIG CRHGDRCSRLHN+PT S T++L N+Y+ P
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQ 60
Query: 119 GVDAQGQPIDPRKIQEHFEDFYEDIFEELS-KFGEIECLNVCDNLADHMIGNVYVQFREE 177
D + ++QEH++ F+E++F EL K+GEIE +NVCDNL DH++GNVYV+FR E
Sbjct: 61 TADGSHCHVSDVEVQEHYDSFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRRE 120
Query: 178 EQAAAALHALQGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRD 237
E A+ L R+++G+ + E SPVTDFRE+ CRQ+E C RGG+CNFMH++ I ++
Sbjct: 121 EDGERAVAELSNRWFNGQAVHGELSPVTDFRESCCRQYEMGECTRGGFCNFMHLRPISQN 180
Query: 238 LRNKLFGRYRRRSRSRSFSPIPHLRSRHRR 267
L+ +L+GR RR F H R R+ R
Sbjct: 181 LQRQLYGRGPRRRSPPRFHTGHHPRERNHR 210
>sp|Q09176|U2AF1_SCHPO Splicing factor U2AF 23 kDa subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAP8A3.06 PE=1 SV=2
Length = 216
Score = 216 bits (549), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 99/174 (56%), Positives = 124/174 (71%), Gaps = 5/174 (2%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MA HLASI+GTE+D+VNC FY+KIGACRHG+RCSR H +P S T+L NMY+ P
Sbjct: 1 MASHLASIYGTEQDKVNCSFYYKIGACRHGERCSRKHVKPNFSQTILCPNMYKNPIH--- 57
Query: 119 GVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEE 178
+ G+ R++ E F+ FYED+F E SK+GE+E L VCDN+ DH++GNVYV+F+ EE
Sbjct: 58 --EPNGKKFTQRELAEQFDAFYEDMFCEFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYEE 115
Query: 179 QAAAALHALQGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVK 232
A A+ L R+YS RP+ E SPVTDFREA CRQ E + C RGG CNFMH K
Sbjct: 116 SAQNAIDDLNSRWYSQRPVYAELSPVTDFREACCRQHETSECQRGGLCNFMHAK 169
>sp|Q15695|U2AFL_HUMAN U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 1 OS=Homo sapiens GN=ZRSR1 PE=2
SV=2
Length = 479
Score = 158 bits (400), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 99/261 (37%), Positives = 130/261 (49%), Gaps = 30/261 (11%)
Query: 70 EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQ-------RPDMITPGVDA 122
EKDR NCPFY K GACR GDRCSR HN PT SPTLL+ +M+ R D P
Sbjct: 171 EKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDPDASL 230
Query: 123 QGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQAAA 182
+ + + F DFYED+ E G++ V NL H+ GNVYVQ++ EE+ A
Sbjct: 231 E---YSEEETYQQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQA 287
Query: 183 ALHALQGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHV----------- 231
AL GR+Y+GR + EF PVT ++ A C FE C RG +CNF+HV
Sbjct: 288 ALSLFNGRWYAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFRNPNNEFWEA 347
Query: 232 ---KLIGRDLRNKLFGRYRRRSRSRSFSPIPHLRSRHRRD--GDRDYRR---SYRDRDYE 283
+ D FG+ R + R R RR+ D Y+R S R +
Sbjct: 348 NRDIYLSSDQTGSSFGKNSERREKMGHHDHYYSRQRGRRNPSPDHTYKRNGESERKKSSH 407
Query: 284 RSRRTHSRSSTS-SRSRTPVR 303
R +++H R+S S R +P R
Sbjct: 408 RGKKSHKRTSKSRERHNSPSR 428
>sp|Q15696|U2AFM_HUMAN U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 2 OS=Homo sapiens GN=ZRSR2 PE=1
SV=2
Length = 482
Score = 155 bits (391), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 98/169 (57%), Gaps = 10/169 (5%)
Query: 70 EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQ-------RPDMITPGVDA 122
EKDR NCPFY K GACR GDRCSR HN PT SPTLL+ +M+ R D P
Sbjct: 166 EKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDPDASL 225
Query: 123 QGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQAAA 182
+ + + F DFYED+ E G++ V NL H+ GNVYVQ++ EE+ A
Sbjct: 226 E---YSEEETYQQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQA 282
Query: 183 ALHALQGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHV 231
AL GR+Y+GR + EF PVT ++ A C FE C RG +CNF+HV
Sbjct: 283 ALSLFNGRWYAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHV 331
>sp|Q62377|U2AFM_MOUSE U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 2 OS=Mus musculus GN=Zrsr2 PE=2
SV=1
Length = 462
Score = 150 bits (379), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 95/169 (56%), Gaps = 10/169 (5%)
Query: 70 EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQ-------RPDMITPGVDA 122
EKDR NCPFY K GACR GDRCSR HN PT SPTLL+ M+ R D P
Sbjct: 170 EKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKGMFTTFGMEQCRRDDYDPDSSL 229
Query: 123 QGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQAAA 182
+ +I + F DFY D+ E G++ V NL H+ GNVYVQ++ EE A
Sbjct: 230 E---FSEEEIYQQFLDFYYDVLPEFKSVGKVIQFKVSCNLEPHLRGNVYVQYQSEEDCQA 286
Query: 183 ALHALQGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHV 231
A GR+Y+GR + EF PVT ++ A C FE C RG +CNF+HV
Sbjct: 287 AFSVFNGRWYAGRQLQCEFCPVTRWKMAICGLFEVQQCPRGKHCNFLHV 335
>sp|Q64707|U2AFL_MOUSE U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit-related protein 1 OS=Mus musculus GN=Zrsr1 PE=2
SV=1
Length = 428
Score = 142 bits (357), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 86/223 (38%), Positives = 118/223 (52%), Gaps = 14/223 (6%)
Query: 70 EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP-----GVDAQG 124
EK R +CPFY K GACR G+RCSR H+ PT SPTLL+ +M+ M DA
Sbjct: 157 EKYRPSCPFYNKTGACRFGNRCSRKHDFPTSSPTLLVKSMFTTFGMEQCRRDDYDSDANL 216
Query: 125 QPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQAAAAL 184
+ + Q+ F DFY D+ E G++ V NL H+ GNVYVQ++ EE+ AAL
Sbjct: 217 EYSEEETYQQ-FLDFYHDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAAL 275
Query: 185 HALQGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDLRNKLFG 244
GR+Y+GR + EF PVT ++ A C FE C +G +CNF+HV RN
Sbjct: 276 SLFNGRWYAGRQLQCEFCPVTRWKVAICGLFEMQKCPKGKHCNFLHV------FRNP-NN 328
Query: 245 RYRRRSRSRSFSPIPHLRSRHRRDGDRDYRRSYRDRDYERSRR 287
+R +R SP P ++ DR R+ + + Y +SR
Sbjct: 329 EFREANRDIYMSP-PAWTGSSGKNSDRRERKDHHEEYYSKSRS 370
>sp|Q9SY74|C3H5_ARATH Zinc finger CCCH domain-containing protein 5 OS=Arabidopsis
thaliana GN=At1g10320 PE=2 SV=2
Length = 757
Score = 141 bits (356), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 114/204 (55%), Gaps = 9/204 (4%)
Query: 34 DKLSEIPFPSQDKDSA----VKFAGRGLAMAEHLASIFGTEKDRVNCPFYFKIGACRHGD 89
D+ + P P + SA V A + L FGTE+D+ +CPF+ K GACR G
Sbjct: 200 DRPTSNPLPPGSEASANYQNVSSAQQILESVAQEVPNFGTEQDKAHCPFHLKTGACRFGQ 259
Query: 90 RCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSK 149
RCSR+H P S TLL+ NMY P IT D +G + + +E+FYED+ E K
Sbjct: 260 RCSRVHFYPNKSCTLLMKNMYNGPG-ITWEQD-EGLEYTDEEAELCYEEFYEDVHTEFLK 317
Query: 150 FGEIECLNVCDNLADHMIGNVYVQFREEEQAAAALHALQGRFYSGRPIIVEFSPVTDFRE 209
+GE+ VC N + H+ GNVYV +R E A A ++ GR+++G+ + EF ++ ++
Sbjct: 318 YGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQSINGRYFAGKQVNCEFVNISRWKV 377
Query: 210 ATCRQFEEN---NCNRGGYCNFMH 230
A C ++ ++ C+RG CNF+H
Sbjct: 378 AICGEYMKSRLKTCSRGSACNFIH 401
>sp|Q6YVX9|C3H16_ORYSJ Zinc finger CCCH domain-containing protein 16 OS=Oryza sativa
subsp. japonica GN=Os02g0557500 PE=2 SV=2
Length = 678
Score = 135 bits (340), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 98/164 (59%), Gaps = 5/164 (3%)
Query: 70 EKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDP 129
++D+ +CPF+ K GACR G RCSR+H P S TLL+ NMY P + +G
Sbjct: 163 QQDKAHCPFHLKTGACRFGVRCSRVHFYPDKSCTLLMRNMYSGPGLALE--QDEGLECTD 220
Query: 130 RKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQAAAALHALQG 189
+I++ +E+FYED+ E KFGE+ VC N + H+ GNVYV ++ + A A ++ G
Sbjct: 221 EEIEQSYEEFYEDVHTEFLKFGELVNFKVCRNGSLHLRGNVYVHYKSLDSALIAYSSMNG 280
Query: 190 RFYSGRPIIVEFSPVTDFREATCRQFEEN---NCNRGGYCNFMH 230
R+++G+ I EF VT ++ A C ++ + C+RG CNF+H
Sbjct: 281 RYFAGKQITCEFVAVTRWKVAICGEYMRSRFKTCSRGIACNFIH 324
>sp|Q29350|U2AF1_PIG Splicing factor U2AF 35 kDa subunit (Fragment) OS=Sus scrofa
GN=U2AF1 PE=2 SV=3
Length = 82
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 62/82 (75%)
Query: 59 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP 118
MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T++L N+Y+ P
Sbjct: 1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQ 60
Query: 119 GVDAQGQPIDPRKIQEHFEDFY 140
D + ++QEH+++F+
Sbjct: 61 TADGSHCHVSDVEVQEHYDNFF 82
>sp|Q2QZL4|U2A2B_ORYSJ Splicing factor U2af large subunit B OS=Oryza sativa subsp.
japonica GN=U2AF65B PE=2 SV=2
Length = 548
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 128 DPRKIQEHFEDFYEDIFEELSKFGEIECLNVC----DNLADHMIGNVYVQFREEEQAAAA 183
D K E +ED ED+ E K+G + + + L +G V++++ + + A A
Sbjct: 458 DELKDDEEYEDIMEDMRLEAGKYGNLIKVVIPRPDPSGLPVAGVGKVFLEYADVDGATKA 517
Query: 184 LHALQGRFYSGRPIIVEFSPVTDFREA 210
A+ GR + G P++ F P F A
Sbjct: 518 KTAMHGRKFGGNPVVAVFYPENKFSSA 544
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 143 IFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFREEEQAAAALHALQGRFYSGRPIIVEF 201
IFE +K GE+ + + + + G YVQF E A AL ALQG + RP+ ++F
Sbjct: 283 IFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDF 342
Query: 202 S 202
S
Sbjct: 343 S 343
>sp|Q8BGC0|HTSF1_MOUSE HIV Tat-specific factor 1 homolog OS=Mus musculus GN=Htatsf1 PE=1
SV=1
Length = 757
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 141 EDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQAAAALHALQGRFYSGRPIIVE 200
ED+ E SKFG+I L + D H G V FRE E+A + L GR++ GR I +
Sbjct: 290 EDLRVECSKFGQIRKLLLFDR---HPDGVASVSFREPEEADHCIQTLDGRWFGGRQITAQ 346
Query: 201 -FSPVTDFR 208
+ TD++
Sbjct: 347 AWDGTTDYQ 355
>sp|P90978|U2AF2_CAEEL Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis elegans
GN=uaf-1 PE=2 SV=2
Length = 496
Score = 40.8 bits (94), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 128 DPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADH---MIGNVYVQFREEEQAAAAL 184
D K + +E+ ED+ +E SK+G + L + DH +G V+V+F A
Sbjct: 409 DELKADDEYEEILEDVRDECSKYGIVRSLEIPRPYEDHPVPGVGKVFVEFASTSDCQRAQ 468
Query: 185 HALQGRFYSGRPIIVEFSPVTDFREATCRQF 215
AL GR ++ R ++ + V + RQF
Sbjct: 469 AALTGRKFANRTVVTSYYDVDKYHN---RQF 496
>sp|P90727|U2AF2_CAEBR Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis briggsae
GN=uaf-1 PE=3 SV=2
Length = 488
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 134 EHFEDFYEDIFEELSKFGEIECLNVCDNLADH---MIGNVYVQFREEEQAAAALHALQGR 190
E +E+ ED+ EE SK+G + L + DH +G V+V+F A AL GR
Sbjct: 406 EDYEEILEDVREECSKYGIVRSLEIPRPYDDHPVPGVGKVFVEFATTSDCQRAQAALTGR 465
Query: 191 FYSGRPIIVEFSPVTDFREATCRQF 215
++ R ++ + V + RQF
Sbjct: 466 KFANRTVVTSYYDVDKYHN---RQF 487
>sp|Q63285|UHMK1_RAT Serine/threonine-protein kinase Kist OS=Rattus norvegicus GN=Uhmk1
PE=1 SV=1
Length = 419
Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 133 QEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQAAAALHALQGRFY 192
++ +ED ED+ EE K+G + L V G V+V++ + AA L GR +
Sbjct: 337 EDEYEDVVEDVKEECQKYGPVVSLLVPKENPGR--GQVFVEYANAGDSKAAQKLLTGRMF 394
Query: 193 SGRPIIVEFSPVTDFREATCRQ 214
G+ ++ F P++ ++ Q
Sbjct: 395 DGKFVVATFYPLSAYKRGYLYQ 416
>sp|P97343|UHMK1_MOUSE Serine/threonine-protein kinase Kist OS=Mus musculus GN=Uhmk1 PE=1
SV=3
Length = 419
Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 133 QEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQAAAALHALQGRFY 192
++ +ED ED+ EE K+G + L V G V+V++ + AA L GR +
Sbjct: 337 EDEYEDVVEDVKEECQKYGPVVSLLVPKENPGR--GQVFVEYANAGDSKAAQKLLTGRMF 394
Query: 193 SGRPIIVEFSPVTDFREATCRQ 214
G+ ++ F P++ ++ Q
Sbjct: 395 DGKFVVATFYPLSAYKRGYLYQ 416
>sp|Q5RB63|HTSF1_PONAB HIV Tat-specific factor 1 homolog OS=Pongo abelii GN=HTATSF1 PE=2
SV=1
Length = 754
Score = 39.3 bits (90), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 141 EDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQAAAALHALQGRFYSGRPIIVE 200
ED+ E SKFG+I L + D H G V FR+ E+A + L GR++ GR I +
Sbjct: 289 EDLRVECSKFGQIRKLLLFDR---HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQ 345
Query: 201 -FSPVTDFR 208
+ TD++
Sbjct: 346 AWDGTTDYQ 354
>sp|O43719|HTSF1_HUMAN HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1
Length = 755
Score = 39.3 bits (90), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 141 EDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQAAAALHALQGRFYSGRPIIVE 200
ED+ E SKFG+I L + D H G V FR+ E+A + L GR++ GR I +
Sbjct: 289 EDLRVECSKFGQIRKLLLFDR---HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQ 345
Query: 201 -FSPVTDFR 208
+ TD++
Sbjct: 346 AWDGTTDYQ 354
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 38.1 bits (87), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 138 DFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQAAAALHALQGRFYSGRPI 197
+ +D+ EE +K G + + V N A GNVYV+ A AA++AL GR+++G+ I
Sbjct: 439 EIKDDVIEECNKHGGVIHIYVDKNSAQ---GNVYVKCPSIAAAIAAVNALHGRWFAGKMI 495
Query: 198 IVEFSPVTDF 207
+ P+ +
Sbjct: 496 TAAYVPLPTY 505
>sp|Q24562|U2AF2_DROME Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster
GN=U2af50 PE=2 SV=1
Length = 416
Score = 38.1 bits (87), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 114 DMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNV---CDNLADHMIGNV 170
+M+TP D + +E +ED EDI EE +K+G + + + + + G V
Sbjct: 324 NMVTP---------DELRDEEEYEDILEDIKEECTKYGVVRSVEIPRPIEGVEVPGCGKV 374
Query: 171 YVQFREEEQAAAALHALQGRFYSGRPIIVEF 201
+V+F A AL GR +S R ++ +
Sbjct: 375 FVEFNSVLDCQKAQQALTGRKFSDRVVVTSY 405
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 141 EDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQAAAALHALQGRFYSGRPIIVE 200
+D+ EE +K G + + V N A GNVYV+ A AA++AL GR+++G+ I
Sbjct: 448 DDVIEECNKHGGVIHIYVDKNSAQ---GNVYVKCPSIAAAIAAVNALHGRWFAGKMITAA 504
Query: 201 FSPVTDF 207
+ P+ +
Sbjct: 505 YVPLPTY 511
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 141 EDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQAAAALHALQGRFYSGRPIIVE 200
+D+ EE +K G + + V N A GNVYV+ A AA++AL GR+++G+ I
Sbjct: 448 DDVIEECNKHGGVIHIYVDKNSAQ---GNVYVKCPSIAAAIAAVNALHGRWFAGKMITAA 504
Query: 201 FSPVTDF 207
+ P+ +
Sbjct: 505 YVPLPTY 511
>sp|Q9R0U0|SRS10_MOUSE Serine/arginine-rich splicing factor 10 OS=Mus musculus GN=Srsf10
PE=1 SV=2
Length = 262
Score = 35.8 bits (81), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 141 EDIFEELSKFGEIECLNV-CDNLADHMIGNVYVQFREEEQAAAALHALQGRFYSGRPIIV 199
ED+ E ++G I + V D G YVQF + A ALH L ++ GR I +
Sbjct: 24 EDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEI 83
Query: 200 EFS 202
+F+
Sbjct: 84 QFA 86
>sp|O75494|SRS10_HUMAN Serine/arginine-rich splicing factor 10 OS=Homo sapiens GN=SRSF10
PE=1 SV=1
Length = 262
Score = 35.8 bits (81), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 141 EDIFEELSKFGEIECLNV-CDNLADHMIGNVYVQFREEEQAAAALHALQGRFYSGRPIIV 199
ED+ E ++G I + V D G YVQF + A ALH L ++ GR I +
Sbjct: 24 EDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEI 83
Query: 200 EFS 202
+F+
Sbjct: 84 QFA 86
>sp|A1CQA9|PRP5_ASPCL Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1) GN=prp5 PE=3 SV=1
Length = 1192
Score = 33.9 bits (76), Expect = 1.6, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 262 RSRHRRDGDRDYRRSYRDRDYERSRRTHSRSSTSSRSRTPV------REGSEERRAKIEQ 315
++R R D D + R RD R+R S+S +S+ TP E ER AK+E
Sbjct: 122 KARRRTDDSADLKHKSR-RDDSRTRDLDSKSRDTSKPSTPAPAAQTEDEKRAERLAKLEA 180
Query: 316 WNR----EREENQ 324
W + E+E Q
Sbjct: 181 WKQKQAAEKERKQ 193
>sp|Q8WXF0|SRS12_HUMAN Serine/arginine-rich splicing factor 12 OS=Homo sapiens GN=SRSF12
PE=2 SV=1
Length = 261
Score = 32.7 bits (73), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 141 EDIFEELSKFGEIECLNV-CDNLADHMIGNVYVQFREEEQAAAALHALQGRFYSGRPIIV 199
ED+ E ++G I + + D G YVQF + A AL+ L ++ GR I +
Sbjct: 24 EDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQIEI 83
Query: 200 EFS 202
+F+
Sbjct: 84 QFA 86
>sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B OS=Arabidopsis thaliana
GN=U2AF65B PE=2 SV=2
Length = 589
Score = 32.3 bits (72), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 134 EHFEDFYEDIFEELSKFGEIECLNVCDNLADH----MIGNVYVQFREEEQAAAALHALQG 189
E + + ED+ +E KFG + + + DH +G V++++ + + ++ A + G
Sbjct: 505 EEYAEIMEDMRQEGGKFGNLVNVVIPRPNPDHDPTPGVGKVFLEYADVDGSSKARSGMNG 564
Query: 190 RFYSGRPIIVEFSP 203
R + G ++ + P
Sbjct: 565 RKFGGNQVVAVYYP 578
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,529,217
Number of Sequences: 539616
Number of extensions: 5455390
Number of successful extensions: 21835
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 452
Number of HSP's that attempted gapping in prelim test: 16389
Number of HSP's gapped (non-prelim): 3704
length of query: 324
length of database: 191,569,459
effective HSP length: 118
effective length of query: 206
effective length of database: 127,894,771
effective search space: 26346322826
effective search space used: 26346322826
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)