Query 040106
Match_columns 324
No_of_seqs 338 out of 1611
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 07:49:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040106.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040106hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jmt_A Splicing factor U2AF 35 99.9 2.4E-25 8.4E-30 180.3 7.3 103 101-203 1-104 (104)
2 3v4m_A Splicing factor U2AF 65 99.9 2E-22 6.8E-27 163.6 9.7 96 99-209 3-101 (105)
3 3s6e_A RNA-binding protein 39; 99.9 2.6E-22 8.8E-27 166.0 10.0 97 96-210 2-98 (114)
4 2pe8_A Splicing factor 45; RRM 99.9 1.3E-21 4.6E-26 158.9 9.1 95 96-210 3-99 (105)
5 3ue2_A Poly(U)-binding-splicin 99.8 9.8E-22 3.3E-26 163.3 7.7 91 99-209 18-113 (118)
6 2dit_A HIV TAT specific factor 99.8 3.1E-20 1E-24 150.7 11.3 103 89-208 3-106 (112)
7 3u1l_A PRE-mRNA-splicing facto 99.7 2.6E-17 8.7E-22 152.5 9.6 126 73-205 70-229 (240)
8 3dxb_A Thioredoxin N-terminall 99.7 3.9E-17 1.3E-21 146.1 8.2 73 137-209 140-217 (222)
9 3pgw_S U1-70K; protein-RNA com 99.6 2E-15 7E-20 149.8 16.4 82 99-205 100-182 (437)
10 3s8s_A Histone-lysine N-methyl 99.6 1.7E-14 5.9E-19 117.3 11.2 83 98-205 3-86 (110)
11 4fxv_A ELAV-like protein 1; RN 99.5 5.2E-14 1.8E-18 112.1 10.9 64 141-204 34-98 (99)
12 2do4_A Squamous cell carcinoma 99.5 1.5E-13 5.2E-18 107.9 12.4 83 97-204 13-95 (100)
13 3mdf_A Peptidyl-prolyl CIS-tra 99.5 7.1E-14 2.4E-18 106.1 9.7 80 98-202 4-84 (85)
14 2cqc_A Arginine/serine-rich sp 99.5 1.2E-13 4.1E-18 106.9 11.0 84 95-203 9-93 (95)
15 3ulh_A THO complex subunit 4; 99.5 1.2E-13 4E-18 109.6 10.8 80 99-203 27-106 (107)
16 2ywk_A Putative RNA-binding pr 99.5 8.7E-14 3E-18 107.9 9.6 81 98-203 13-93 (95)
17 3ns6_A Eukaryotic translation 99.5 6E-14 2.1E-18 111.3 8.8 85 100-203 5-91 (100)
18 2dnz_A Probable RNA-binding pr 99.5 1.2E-13 4.1E-18 107.2 10.1 82 98-204 2-84 (95)
19 2la6_A RNA-binding protein FUS 99.5 1.8E-13 6.1E-18 107.5 10.7 84 94-202 6-98 (99)
20 2e5h_A Zinc finger CCHC-type a 99.5 1.4E-13 4.8E-18 106.6 9.8 81 97-202 12-93 (94)
21 4f25_A Polyadenylate-binding p 99.5 1.4E-13 4.8E-18 111.8 10.2 81 98-204 2-82 (115)
22 3bs9_A Nucleolysin TIA-1 isofo 99.5 2E-13 6.8E-18 104.0 10.5 81 99-204 4-85 (87)
23 2x1f_A MRNA 3'-END-processing 99.5 1.9E-13 6.6E-18 106.7 10.6 83 100-207 1-84 (96)
24 1whw_A Hypothetical protein ri 99.5 1.6E-13 5.4E-18 107.4 9.9 84 98-206 5-89 (99)
25 2d9p_A Polyadenylate-binding p 99.5 1.8E-13 6.3E-18 108.0 10.4 84 96-205 10-93 (103)
26 2lxi_A RNA-binding protein 10; 99.5 3.5E-14 1.2E-18 111.1 6.2 79 101-204 1-82 (91)
27 3md1_A Nuclear and cytoplasmic 99.5 2.6E-13 9E-18 102.5 10.7 64 141-204 16-80 (83)
28 2do0_A HnRNP M, heterogeneous 99.5 3.9E-13 1.3E-17 107.8 12.3 83 97-204 11-93 (114)
29 2krb_A Eukaryotic translation 99.5 5.5E-14 1.9E-18 106.7 6.9 79 101-199 1-80 (81)
30 1x5t_A Splicing factor 3B subu 99.5 1.1E-13 3.8E-18 107.5 8.6 84 98-206 2-87 (96)
31 2dnh_A Bruno-like 5, RNA bindi 99.5 3.3E-13 1.1E-17 106.7 11.4 84 97-205 11-97 (105)
32 1x5u_A Splicing factor 3B subu 99.5 2.2E-13 7.7E-18 107.6 10.2 85 96-205 10-95 (105)
33 2cq3_A RNA-binding protein 9; 99.5 4.9E-13 1.7E-17 105.5 12.0 85 95-205 9-93 (103)
34 2cqb_A Peptidyl-prolyl CIS-tra 99.5 1.5E-13 5.3E-18 108.0 9.0 85 97-206 8-93 (102)
35 2cq0_A Eukaryotic translation 99.5 2.5E-13 8.5E-18 107.2 10.0 84 97-205 11-95 (103)
36 2fy1_A RNA-binding motif prote 99.5 2.2E-13 7.4E-18 111.2 9.7 84 98-206 4-87 (116)
37 2dgo_A Cytotoxic granule-assoc 99.5 5.1E-13 1.7E-17 107.4 11.7 83 97-204 11-94 (115)
38 2cph_A RNA binding motif prote 99.5 3.8E-13 1.3E-17 106.5 10.6 86 96-206 10-98 (107)
39 2e5j_A Methenyltetrahydrofolat 99.5 2.4E-13 8.3E-18 106.5 9.3 93 83-204 1-93 (97)
40 2nlw_A Eukaryotic translation 99.5 2.4E-13 8.3E-18 108.5 9.5 84 100-203 14-98 (105)
41 2cpz_A CUG triplet repeat RNA- 99.5 4.5E-13 1.5E-17 107.9 11.0 82 99-205 23-105 (115)
42 2cpi_A CCR4-NOT transcription 99.4 5E-13 1.7E-17 107.7 11.0 85 96-205 10-101 (111)
43 2a3j_A U1 small nuclear ribonu 99.4 2.7E-13 9.3E-18 113.5 9.6 85 99-206 27-111 (127)
44 1x5s_A Cold-inducible RNA-bind 99.4 3.8E-13 1.3E-17 105.8 9.7 84 96-204 7-91 (102)
45 2dnm_A SRP46 splicing factor; 99.4 3E-13 1E-17 106.7 9.1 83 97-204 9-92 (103)
46 2kt5_A RNA and export factor-b 99.4 4.1E-13 1.4E-17 109.7 10.1 84 97-205 31-114 (124)
47 1sjq_A Polypyrimidine tract-bi 99.4 2.4E-13 8.1E-18 111.1 8.3 83 94-206 9-93 (105)
48 2cqi_A Nucleolysin TIAR; RNA r 99.4 1E-12 3.6E-17 103.6 11.8 82 97-204 11-92 (103)
49 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 1.3E-12 4.6E-17 107.6 12.9 81 97-202 59-140 (140)
50 2cpf_A RNA binding motif prote 99.4 5.2E-13 1.8E-17 104.3 9.9 82 99-205 3-88 (98)
51 2lkz_A RNA-binding protein 5; 99.4 1.7E-13 5.9E-18 109.0 7.0 79 100-203 8-93 (95)
52 3r27_A HnRNP L, heterogeneous 99.4 5.4E-13 1.9E-17 108.1 9.9 77 99-205 19-97 (100)
53 2dgv_A HnRNP M, heterogeneous 99.4 5.8E-13 2E-17 102.7 9.5 80 99-204 6-85 (92)
54 1p27_B RNA-binding protein 8A; 99.4 5.5E-13 1.9E-17 105.6 9.6 80 99-203 21-101 (106)
55 3md3_A Nuclear and cytoplasmic 99.4 2.4E-12 8.2E-17 107.0 13.9 144 18-203 19-165 (166)
56 2dhg_A TRNA selenocysteine ass 99.4 3.9E-13 1.3E-17 106.1 8.4 82 98-204 6-89 (104)
57 1why_A Hypothetical protein ri 99.4 9.9E-13 3.4E-17 102.8 10.6 78 97-204 13-92 (97)
58 1x4h_A RNA-binding protein 28; 99.4 8.8E-13 3E-17 105.0 10.3 84 97-205 11-101 (111)
59 1u6f_A Tcubp1, RNA-binding pro 99.4 9.2E-13 3.2E-17 109.3 10.6 86 98-208 39-125 (139)
60 2jrs_A RNA-binding protein 39; 99.4 7E-13 2.4E-17 106.8 9.5 82 98-204 23-105 (108)
61 1oo0_B CG8781-PA, drosophila Y 99.4 8.5E-13 2.9E-17 105.3 9.9 81 99-204 24-105 (110)
62 2dgs_A DAZ-associated protein 99.4 1.1E-12 3.8E-17 102.7 10.2 83 97-205 6-89 (99)
63 2err_A Ataxin-2-binding protei 99.4 6.4E-13 2.2E-17 106.9 9.0 84 95-204 23-106 (109)
64 2wbr_A GW182, gawky, LD47780P; 99.4 5.4E-13 1.9E-17 106.2 8.4 77 100-206 6-82 (89)
65 1x4a_A Splicing factor, argini 99.4 1.5E-12 5E-17 103.9 11.0 81 97-204 18-98 (109)
66 2kxn_B Transformer-2 protein h 99.4 4.7E-13 1.6E-17 111.5 8.4 85 96-205 41-126 (129)
67 4a8x_A RNA-binding protein wit 99.4 8.6E-13 3E-17 100.5 9.2 80 100-204 3-84 (88)
68 2dgx_A KIAA0430 protein; RRM d 99.4 1E-12 3.5E-17 103.1 9.8 82 100-204 8-89 (96)
69 2dng_A Eukaryotic translation 99.4 1.2E-12 4.2E-17 103.4 10.3 85 93-204 7-92 (103)
70 3ex7_B RNA-binding protein 8A; 99.4 6.2E-13 2.1E-17 108.6 8.8 80 99-203 20-100 (126)
71 1wi8_A EIF-4B, eukaryotic tran 99.4 9.3E-13 3.2E-17 104.2 9.5 85 94-205 8-94 (104)
72 1nu4_A U1A RNA binding domain; 99.4 5E-13 1.7E-17 104.0 7.6 85 98-205 5-89 (97)
73 3lqv_A PRE-mRNA branch site pr 99.4 1.1E-12 3.7E-17 105.5 9.7 81 97-204 4-84 (115)
74 2cpe_A RNA-binding protein EWS 99.4 1.1E-12 3.7E-17 105.2 9.6 82 98-204 12-102 (113)
75 2div_A TRNA selenocysteine ass 99.4 9E-13 3.1E-17 103.1 8.9 83 98-205 6-94 (99)
76 1s79_A Lupus LA protein; RRM, 99.4 5.5E-13 1.9E-17 107.2 7.8 80 97-202 7-86 (103)
77 2dgw_A Probable RNA-binding pr 99.4 3E-12 1E-16 98.8 11.7 83 96-205 5-87 (91)
78 1p1t_A Cleavage stimulation fa 99.4 6.1E-13 2.1E-17 104.7 7.6 83 100-207 7-90 (104)
79 1x4f_A Matrin 3; structural ge 99.4 7.2E-13 2.5E-17 109.2 8.3 92 83-204 7-101 (112)
80 2dgp_A Bruno-like 4, RNA bindi 99.4 1.1E-12 3.7E-17 103.9 9.0 84 97-205 9-96 (106)
81 3ucg_A Polyadenylate-binding p 99.4 1.1E-12 3.9E-17 100.2 8.8 63 141-204 21-84 (89)
82 1x4d_A Matrin 3; structural ge 99.4 5.6E-13 1.9E-17 107.9 7.4 78 97-204 11-91 (102)
83 1h2v_Z 20 kDa nuclear CAP bind 99.4 2.7E-12 9.3E-17 108.7 12.0 83 97-204 35-118 (156)
84 1wex_A Hypothetical protein (r 99.4 1.2E-12 4E-17 105.8 9.2 80 98-207 12-93 (104)
85 2ytc_A PRE-mRNA-splicing facto 99.4 1.5E-12 5.1E-17 98.9 9.2 77 96-202 7-84 (85)
86 2ek1_A RNA-binding protein 12; 99.4 5.1E-13 1.7E-17 103.6 6.6 80 99-203 13-93 (95)
87 2khc_A Testis-specific RNP-typ 99.4 8.4E-13 2.9E-17 106.6 8.0 80 98-202 37-117 (118)
88 1whx_A Hypothetical protein ri 99.4 8.9E-13 3E-17 106.7 8.1 79 100-208 9-87 (111)
89 2xnq_A Nuclear polyadenylated 99.4 2.5E-12 8.6E-17 101.5 10.5 78 95-204 16-94 (97)
90 3p5t_L Cleavage and polyadenyl 99.4 5.4E-13 1.8E-17 103.4 6.2 64 141-204 16-82 (90)
91 2cqd_A RNA-binding region cont 99.4 2.7E-12 9.1E-17 103.5 10.5 81 98-204 14-95 (116)
92 2dnn_A RNA-binding protein 12; 99.4 5.7E-13 1.9E-17 108.6 6.5 94 91-211 6-99 (109)
93 2cq2_A Hypothetical protein LO 99.4 1.4E-12 4.7E-17 108.0 8.9 63 141-208 42-109 (114)
94 2cq1_A PTB-like protein L; RRM 99.4 2.4E-12 8.1E-17 103.6 9.7 78 99-206 13-92 (101)
95 2ad9_A Polypyrimidine tract-bi 99.4 1.6E-12 5.5E-17 108.2 8.9 80 99-208 29-110 (119)
96 1x5p_A Negative elongation fac 99.4 3.9E-12 1.3E-16 99.6 10.6 79 96-206 10-88 (97)
97 1x5o_A RNA binding motif, sing 99.4 4.6E-12 1.6E-16 101.6 11.3 80 99-203 23-110 (114)
98 3beg_B Splicing factor, argini 99.4 2.4E-12 8.1E-17 104.6 9.5 72 100-202 15-86 (115)
99 2j76_E EIF-4B, EIF4B, eukaryot 99.4 9.6E-13 3.3E-17 104.0 6.9 80 98-204 16-97 (100)
100 2cpj_A Non-POU domain-containi 99.4 2.1E-12 7E-17 101.4 8.7 78 97-204 11-88 (99)
101 1rk8_A CG8781-PA, CG8781-PA pr 99.4 3.4E-12 1.2E-16 109.6 10.8 80 99-203 70-150 (165)
102 2db1_A Heterogeneous nuclear r 99.4 1.2E-12 4E-17 107.0 7.4 86 98-209 14-102 (118)
103 3nmr_A Cugbp ELAV-like family 99.4 8.5E-12 2.9E-16 104.8 12.9 149 18-202 22-174 (175)
104 2g4b_A Splicing factor U2AF 65 99.3 4.4E-12 1.5E-16 106.7 10.9 81 97-202 90-171 (172)
105 1x4g_A Nucleolysin TIAR; struc 99.3 3.4E-12 1.2E-16 102.0 9.6 76 99-204 23-98 (109)
106 2dnq_A RNA-binding protein 4B; 99.3 2.8E-12 9.4E-17 99.0 8.8 76 98-205 5-80 (90)
107 3s7r_A Heterogeneous nuclear r 99.3 6.2E-12 2.1E-16 96.0 10.6 80 97-202 7-87 (87)
108 1wel_A RNA-binding protein 12; 99.3 7.9E-13 2.7E-17 108.3 5.9 88 95-208 19-107 (124)
109 1wg5_A Heterogeneous nuclear r 99.3 2.9E-12 9.8E-17 102.1 9.0 86 97-208 11-97 (104)
110 2f3j_A RNA and export factor b 99.3 1.9E-12 6.3E-17 113.6 8.6 85 97-206 84-168 (177)
111 2cqp_A RNA-binding protein 12; 99.3 1.3E-12 4.3E-17 102.0 6.7 80 99-203 13-93 (98)
112 2cq4_A RNA binding motif prote 99.3 1.8E-12 6.1E-17 104.2 7.8 78 101-204 25-103 (114)
113 1fxl_A Paraneoplastic encephal 99.3 7.3E-12 2.5E-16 104.2 11.7 82 100-206 1-83 (167)
114 1x4c_A Splicing factor, argini 99.3 4.8E-12 1.6E-16 101.3 10.1 75 99-204 13-92 (108)
115 2kn4_A Immunoglobulin G-bindin 99.3 4.2E-12 1.4E-16 107.3 10.2 84 97-205 66-150 (158)
116 2jvo_A Nucleolar protein 3; nu 99.3 3.8E-12 1.3E-16 102.6 9.4 75 98-204 28-102 (108)
117 1x4e_A RNA binding motif, sing 99.3 5.2E-13 1.8E-17 101.7 3.9 80 98-202 2-82 (85)
118 2fc9_A NCL protein; structure 99.3 5E-12 1.7E-16 99.3 9.7 81 97-205 11-91 (101)
119 2dh8_A DAZ-associated protein 99.3 2.5E-12 8.4E-17 101.8 8.0 82 98-205 13-95 (105)
120 2jwn_A Embryonic polyadenylate 99.3 3.6E-12 1.2E-16 103.7 9.1 78 101-204 36-114 (124)
121 2dgu_A Heterogeneous nuclear r 99.3 7.1E-12 2.4E-16 99.1 10.5 74 99-204 9-82 (103)
122 2cpy_A RNA-binding protein 12; 99.3 2E-12 7E-17 104.6 7.5 86 96-207 10-96 (114)
123 2la4_A Nuclear and cytoplasmic 99.3 2.7E-12 9.3E-17 100.8 7.7 74 100-203 26-99 (101)
124 3zzy_A Polypyrimidine tract-bi 99.3 9.2E-12 3.1E-16 105.3 11.1 62 141-206 43-107 (130)
125 1wez_A HnRNP H', FTP-3, hetero 99.3 2.8E-12 9.4E-17 102.6 7.4 84 95-205 9-92 (102)
126 3n9u_C Cleavage and polyadenyl 99.3 6.6E-12 2.2E-16 108.1 10.3 80 100-204 54-136 (156)
127 1b7f_A Protein (SXL-lethal pro 99.3 1E-11 3.4E-16 103.9 10.9 80 98-202 86-168 (168)
128 2mss_A Protein (musashi1); RNA 99.3 2.3E-12 7.9E-17 95.8 6.1 61 141-202 14-75 (75)
129 1wf1_A RNA-binding protein RAL 99.3 6.1E-12 2.1E-16 100.7 8.9 75 98-204 24-99 (110)
130 2dnp_A RNA-binding protein 14; 99.3 9.7E-12 3.3E-16 95.9 9.5 77 97-205 5-81 (90)
131 2jvr_A Nucleolar protein 3; RN 99.3 5E-12 1.7E-16 103.5 8.3 78 98-203 25-103 (111)
132 2bz2_A Negative elongation fac 99.3 5.3E-12 1.8E-16 104.1 8.5 64 141-209 52-115 (121)
133 2dgt_A RNA-binding protein 30; 99.3 1.3E-11 4.4E-16 95.6 10.1 76 97-204 6-81 (92)
134 2cpx_A Hypothetical protein FL 99.3 4.9E-12 1.7E-16 101.4 8.0 83 95-205 19-105 (115)
135 2diu_A KIAA0430 protein; struc 99.3 5.7E-12 2E-16 101.6 8.3 76 99-204 6-83 (96)
136 2hvz_A Splicing factor, argini 99.3 3.8E-12 1.3E-16 100.0 7.1 61 141-205 15-75 (101)
137 2qfj_A FBP-interacting repress 99.3 8.7E-12 3E-16 108.6 10.1 81 99-204 123-204 (216)
138 2i2y_A Fusion protein consists 99.3 1.1E-11 3.7E-16 104.4 10.4 80 96-204 68-147 (150)
139 2m2b_A RNA-binding protein 10; 99.3 2.5E-12 8.5E-17 106.5 6.2 80 99-204 21-107 (131)
140 2yh0_A Splicing factor U2AF 65 99.3 1.1E-11 3.7E-16 106.6 10.4 82 98-204 111-193 (198)
141 2hgl_A HNRPF protein, heteroge 99.3 2.9E-12 1E-16 108.5 6.6 85 97-207 40-127 (136)
142 1fxl_A Paraneoplastic encephal 99.3 2.1E-11 7.3E-16 101.3 11.8 143 19-202 22-167 (167)
143 2e44_A Insulin-like growth fac 99.3 1.3E-11 4.6E-16 95.8 9.9 79 99-205 13-92 (96)
144 1b7f_A Protein (SXL-lethal pro 99.3 1E-11 3.6E-16 103.8 9.9 82 100-206 2-84 (168)
145 2lmi_A GRSF-1, G-rich sequence 99.3 2E-12 7E-17 103.4 5.2 87 96-208 6-95 (107)
146 2cpd_A Apobec-1 stimulating pr 99.3 2E-11 6.8E-16 95.7 10.7 74 99-204 13-88 (99)
147 2ki2_A SS-DNA binding protein 99.3 1.4E-12 4.7E-17 100.3 3.8 66 141-207 16-82 (90)
148 2lea_A Serine/arginine-rich sp 99.3 2.9E-12 9.9E-17 107.3 6.0 84 96-204 42-126 (135)
149 2kvi_A Nuclear polyadenylated 99.3 5.1E-12 1.7E-16 98.9 7.0 75 99-205 8-83 (96)
150 3smz_A Protein raver-1, ribonu 99.3 3.5E-11 1.2E-15 110.1 13.6 152 19-209 115-268 (284)
151 2cqg_A TDP-43, TAR DNA-binding 99.3 3E-11 1E-15 95.2 11.4 79 99-204 13-92 (103)
152 3md3_A Nuclear and cytoplasmic 99.3 1.8E-11 6.1E-16 101.7 10.5 64 141-204 15-78 (166)
153 2dis_A Unnamed protein product 99.3 8.6E-12 2.9E-16 99.1 8.2 81 99-204 6-91 (109)
154 2rs2_A Musashi-1, RNA-binding 99.3 1.4E-11 4.8E-16 99.1 9.1 82 97-204 21-103 (109)
155 1uaw_A Mouse-musashi-1; RNP-ty 99.3 5.9E-12 2E-16 93.7 6.2 61 141-202 15-76 (77)
156 1x4b_A Heterogeneous nuclear r 99.3 1.5E-11 5.1E-16 99.1 8.8 79 100-204 26-105 (116)
157 1wg1_A KIAA1579 protein, homol 99.3 1.5E-11 5.2E-16 94.7 8.4 77 100-207 4-80 (88)
158 1fjc_A Nucleolin RBD2, protein 99.3 8.6E-12 2.9E-16 96.9 7.0 77 99-204 14-90 (96)
159 2cqh_A IGF-II mRNA-binding pro 99.2 1.3E-11 4.6E-16 95.5 7.8 76 98-204 5-82 (93)
160 2e5i_A Heterogeneous nuclear r 99.2 3.4E-11 1.2E-15 100.7 10.5 61 141-206 40-103 (124)
161 3tyt_A Heterogeneous nuclear r 99.2 1.8E-11 6.1E-16 109.3 9.3 76 100-204 3-79 (205)
162 1sjr_A Polypyrimidine tract-bi 99.2 2.9E-11 9.8E-16 106.1 10.3 63 141-206 61-125 (164)
163 3egn_A RNA-binding protein 40; 99.2 1.7E-11 5.9E-16 102.3 8.4 80 98-204 42-129 (143)
164 4f02_A Polyadenylate-binding p 99.2 2.6E-11 8.8E-16 107.5 9.9 147 18-204 34-180 (213)
165 2ghp_A U4/U6 snRNA-associated 99.2 4.6E-11 1.6E-15 109.6 11.9 119 54-204 167-290 (292)
166 1fj7_A Nucleolin RBD1, protein 99.2 1.7E-12 5.9E-17 102.0 1.8 80 99-204 15-94 (101)
167 3q2s_C Cleavage and polyadenyl 99.2 1.4E-11 4.7E-16 112.2 7.8 80 100-204 67-149 (229)
168 2fc8_A NCL protein; structure 99.2 5.7E-11 1.9E-15 93.2 10.2 81 96-204 10-91 (102)
169 2dha_A FLJ20171 protein; RRM d 99.2 8.7E-12 3E-16 103.9 5.5 87 99-211 21-111 (123)
170 2hgn_A Heterogeneous nuclear r 99.2 5.9E-12 2E-16 107.1 4.2 85 96-207 41-125 (139)
171 4f02_A Polyadenylate-binding p 99.2 6.8E-11 2.3E-15 104.8 11.2 81 100-205 14-95 (213)
172 2cjk_A Nuclear polyadenylated 99.2 2.6E-11 8.9E-16 101.5 7.6 79 100-204 86-165 (167)
173 2lcw_A RNA-binding protein FUS 98.8 1.8E-12 6.1E-17 104.7 0.0 82 99-205 5-95 (116)
174 1l3k_A Heterogeneous nuclear r 99.2 8.8E-11 3E-15 100.7 10.0 81 99-205 102-183 (196)
175 1iqt_A AUF1, heterogeneous nuc 99.2 1.4E-11 4.9E-16 91.3 4.4 61 141-202 14-75 (75)
176 2xs2_A Deleted in azoospermia- 99.2 2.9E-11 9.8E-16 95.1 6.2 77 100-203 8-84 (102)
177 3pgw_A U1-A; protein-RNA compl 99.2 1.2E-10 4E-15 106.4 11.3 83 99-204 7-89 (282)
178 1fje_B Nucleolin RBD12, protei 99.2 5.6E-11 1.9E-15 100.6 7.8 78 98-204 96-173 (175)
179 2e5g_A U6 snRNA-specific termi 99.2 8.8E-11 3E-15 91.3 8.3 78 99-206 6-83 (94)
180 3pgw_A U1-A; protein-RNA compl 99.1 1.2E-10 4E-15 106.4 10.1 59 141-203 222-281 (282)
181 2qfj_A FBP-interacting repress 99.1 8.6E-11 3E-15 102.2 8.2 82 100-206 27-109 (216)
182 2hgm_A HNRPF protein, heteroge 99.1 2.6E-11 8.8E-16 101.6 4.6 82 97-205 38-121 (126)
183 2voo_A Lupus LA protein; RNA-b 99.1 2E-10 6.7E-15 101.9 10.3 76 101-202 109-184 (193)
184 1qm9_A Polypyrimidine tract-bi 99.1 1E-10 3.5E-15 101.3 8.3 77 99-204 118-196 (198)
185 1l3k_A Heterogeneous nuclear r 99.1 1.8E-10 6.1E-15 98.8 9.5 82 97-204 9-91 (196)
186 2hzc_A Splicing factor U2AF 65 99.1 1.1E-10 3.8E-15 88.7 7.2 71 100-201 5-86 (87)
187 2adc_A Polypyrimidine tract-bi 99.1 1.3E-10 4.6E-15 104.0 8.5 77 99-204 32-109 (229)
188 3d2w_A TAR DNA-binding protein 99.1 2.4E-10 8.2E-15 88.9 8.7 77 95-204 5-83 (89)
189 3nmr_A Cugbp ELAV-like family 99.1 3.7E-10 1.3E-14 94.7 8.9 80 100-204 2-87 (175)
190 2adc_A Polypyrimidine tract-bi 99.1 4E-10 1.4E-14 100.9 9.4 76 100-204 150-227 (229)
191 3smz_A Protein raver-1, ribonu 99.1 1.1E-09 3.9E-14 100.0 12.3 81 100-205 94-175 (284)
192 3sde_A Paraspeckle component 1 99.1 9.6E-10 3.3E-14 100.4 11.8 81 100-205 95-179 (261)
193 1qm9_A Polypyrimidine tract-bi 99.0 2.2E-10 7.4E-15 99.2 6.7 76 100-204 2-78 (198)
194 2d9o_A DNAJ (HSP40) homolog, s 99.0 3.4E-10 1.1E-14 91.2 7.0 60 141-206 32-91 (100)
195 2j8a_A Histone-lysine N-methyl 99.0 3.6E-10 1.2E-14 96.1 7.2 64 141-204 21-95 (136)
196 2dnl_A Cytoplasmic polyadenyla 99.0 6.5E-10 2.2E-14 89.7 7.7 78 99-204 6-87 (114)
197 2ghp_A U4/U6 snRNA-associated 99.0 7.9E-10 2.7E-14 101.4 8.7 83 99-206 115-198 (292)
198 3sde_A Paraspeckle component 1 99.0 7.9E-10 2.7E-14 101.0 8.5 77 98-204 19-95 (261)
199 2cjk_A Nuclear polyadenylated 99.0 4.1E-10 1.4E-14 94.1 5.5 79 100-205 2-81 (167)
200 1fje_B Nucleolin RBD12, protei 99.0 1.8E-10 6.1E-15 97.4 3.1 82 97-204 9-90 (175)
201 3tyt_A Heterogeneous nuclear r 99.0 1.6E-09 5.5E-14 96.6 9.0 78 99-202 121-204 (205)
202 3tht_A Alkylated DNA repair pr 99.0 1.2E-09 4E-14 105.9 8.4 77 99-203 16-97 (345)
203 1wf0_A TDP-43, TAR DNA-binding 98.9 1E-09 3.5E-14 84.0 5.2 73 99-204 3-77 (88)
204 2dnr_A Synaptojanin-1; RRM dom 98.9 6E-09 2.1E-13 83.2 8.1 62 137-207 26-87 (91)
205 2g4b_A Splicing factor U2AF 65 98.8 5.5E-09 1.9E-13 87.6 7.8 74 100-204 3-87 (172)
206 2yh0_A Splicing factor U2AF 65 98.8 4.8E-09 1.6E-13 90.0 7.4 74 100-204 3-87 (198)
207 1ufw_A Synaptojanin 2; RNP dom 98.7 3.1E-08 1.1E-12 79.6 7.0 58 137-202 35-92 (95)
208 1owx_A Lupus LA protein, SS-B, 98.2 5.6E-06 1.9E-10 69.0 8.2 58 141-203 34-94 (121)
209 1wey_A Calcipressin 1; structu 97.5 0.00023 7.8E-09 58.0 7.4 82 100-206 4-85 (104)
210 2l9w_A U4/U6 snRNA-associated- 97.4 0.00049 1.7E-08 56.8 8.3 57 141-202 36-97 (117)
211 1wwh_A Nucleoporin 35, nucleop 96.8 0.0028 9.6E-08 52.7 7.1 54 141-200 38-92 (119)
212 1m9o_A Tristetraproline; Cys3H 96.1 0.0022 7.5E-08 48.2 2.1 25 73-97 12-36 (77)
213 2cqe_A KIAA1064 protein; CCCH 95.7 0.0062 2.1E-07 48.6 3.3 25 210-234 37-62 (98)
214 2i2y_A Fusion protein consists 95.2 0.0076 2.6E-07 49.9 2.3 40 164-204 10-50 (150)
215 3p3d_A Nucleoporin 53; structu 94.9 0.024 8.4E-07 47.8 4.4 61 141-202 21-96 (132)
216 2kn4_A Immunoglobulin G-bindin 94.6 0.035 1.2E-06 45.9 4.8 36 155-191 2-37 (158)
217 2d9n_A Cleavage and polyadenyl 93.8 0.026 8.8E-07 42.9 2.1 24 210-234 39-63 (77)
218 2rhk_C Cleavage and polyadenyl 93.7 0.029 9.8E-07 42.3 2.1 25 71-96 14-38 (72)
219 1whv_A Poly(A)-specific ribonu 90.8 0.79 2.7E-05 36.8 7.3 41 141-188 30-70 (100)
220 2d9n_A Cleavage and polyadenyl 90.6 0.09 3.1E-06 39.8 1.5 30 205-234 6-35 (77)
221 3d2q_A Muscleblind-like protei 90.2 0.074 2.5E-06 39.6 0.7 25 209-233 6-31 (70)
222 2rhk_C Cleavage and polyadenyl 89.3 0.1 3.6E-06 39.2 1.0 32 203-234 10-41 (72)
223 3d2n_A Muscleblind-like protei 89.2 0.13 4.5E-06 39.8 1.5 26 208-233 8-34 (83)
224 1m9o_A Tristetraproline; Cys3H 87.9 0.23 8E-06 36.9 2.1 32 203-234 6-38 (77)
225 2rpp_A Muscleblind-like protei 86.9 0.15 5.2E-06 40.0 0.5 27 208-234 16-43 (89)
226 1uw4_A UPF3X; nonsense mediate 85.6 3.8 0.00013 32.0 8.1 64 141-204 16-87 (91)
227 2d9m_A Zinc finger CCCH-type d 85.5 0.25 8.6E-06 37.2 1.1 23 210-232 21-43 (69)
228 3d2q_A Muscleblind-like protei 84.6 0.25 8.6E-06 36.7 0.7 28 204-232 37-64 (70)
229 2cqe_A KIAA1064 protein; CCCH 84.2 0.41 1.4E-05 37.9 1.9 30 207-236 11-40 (98)
230 2e5s_A Otthump00000018578; ZF- 83.8 0.12 4E-06 41.3 -1.5 27 208-234 19-46 (98)
231 3ctr_A Poly(A)-specific ribonu 81.1 1 3.5E-05 36.2 3.1 41 141-188 20-60 (101)
232 2e5s_A Otthump00000018578; ZF- 77.1 0.58 2E-05 37.2 0.4 28 205-233 52-79 (98)
233 3u1l_A PRE-mRNA-splicing facto 72.7 0.8 2.7E-05 41.8 0.3 30 210-239 71-100 (240)
234 2d9m_A Zinc finger CCCH-type d 72.2 0.93 3.2E-05 34.1 0.5 21 74-95 21-41 (69)
235 3pq1_A Poly(A) RNA polymerase; 70.3 2.1 7E-05 42.9 2.6 41 141-185 67-107 (464)
236 3h7h_B Transcription elongatio 70.3 3.2 0.00011 33.4 3.2 36 152-191 40-75 (106)
237 3lpe_A Putative transcription 67.6 10 0.00034 29.3 5.6 34 153-190 40-73 (92)
238 3d2n_A Muscleblind-like protei 65.9 1.6 5.4E-05 33.6 0.6 25 208-233 42-66 (83)
239 3pgw_S U1-70K; protein-RNA com 58.6 22 0.00075 34.7 7.4 29 174-204 148-176 (437)
240 3d45_A Poly(A)-specific ribonu 58.2 32 0.0011 34.3 8.7 42 141-189 454-495 (507)
241 2exu_A Transcription initiatio 56.6 5.4 0.00018 35.6 2.4 46 153-206 139-184 (200)
242 2dhx_A Poly (ADP-ribose) polym 55.0 34 0.0012 27.4 6.6 52 142-201 24-80 (104)
243 2l08_A Regulator of nonsense t 50.5 20 0.00069 28.4 4.6 39 166-204 52-95 (97)
244 2rpp_A Muscleblind-like protei 50.0 3.9 0.00013 31.9 0.3 31 209-243 51-81 (89)
245 2fc6_A Nuclear, target of EGR1 41.7 5.6 0.00019 28.0 0.1 28 208-235 19-47 (50)
246 2e7g_A Putative ribosome-bindi 41.2 51 0.0018 26.8 5.9 55 150-207 43-103 (129)
247 2g0c_A ATP-dependent RNA helic 39.0 19 0.00066 26.0 2.7 53 142-202 17-74 (76)
248 1k4n_A Protein EC4020, protein 37.6 78 0.0027 28.0 6.8 63 128-199 13-83 (192)
249 2fc6_A Nuclear, target of EGR1 37.3 12 0.00043 26.2 1.3 29 73-101 20-48 (50)
250 3p8b_B Transcription antitermi 34.2 29 0.00099 28.7 3.3 34 153-190 33-66 (152)
251 3u9g_A Zinc finger CCCH-type a 30.9 20 0.00068 32.6 1.9 25 73-98 151-179 (229)
252 3swz_A Steroid 17-alpha-hydrox 25.3 75 0.0026 29.8 5.0 71 97-197 10-80 (494)
253 3fmb_A Dimeric protein of unkn 24.7 2.5E+02 0.0085 22.1 7.3 53 127-180 33-88 (118)
254 2kzf_A RBFA, ribosome-binding 20.9 79 0.0027 24.8 3.5 36 150-188 35-71 (106)
No 1
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.91 E-value=2.4e-25 Score=180.35 Aligned_cols=103 Identities=44% Similarity=0.879 Sum_probs=87.6
Q ss_pred CCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHH-hccCCeeEEEEeeCCCCCceeEEEEEeCcHHH
Q 040106 101 SPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEEL-SKFGEIECLNVCDNLADHMIGNVYVQFREEEQ 179 (324)
Q Consensus 101 S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf-~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~ed 179 (324)
|+||+|+|||++|.+.....+.-...+++++|+++|++|++||+++| ++||+|.+|.|+.+..++++|+|||+|.+.++
T Consensus 1 s~~~~l~nm~~~p~~~~~~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~ 80 (104)
T 1jmt_A 1 SQTIALLNIYRNPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREED 80 (104)
T ss_dssp CCEEEEEEEEECCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHH
T ss_pred CcEEEEeeccCCccccccccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHH
Confidence 79999999999887532211100123567899999999999999999 99999999999998778899999999999999
Q ss_pred HHHHHHHhcCCeeCCeEEEEEeec
Q 040106 180 AAAALHALQGRFYSGRPIIVEFSP 203 (324)
Q Consensus 180 A~~Ai~~LnGR~f~GR~I~vefs~ 203 (324)
|.+|++.|||++|+||+|.|+|+|
T Consensus 81 A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 81 AEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp HHHHHHHHTTCEETTEECCEEECC
T ss_pred HHHHHHHHCCCEECCEEEEEEEcC
Confidence 999999999999999999999986
No 2
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.87 E-value=2e-22 Score=163.61 Aligned_cols=96 Identities=21% Similarity=0.425 Sum_probs=84.5
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCC---CceeEEEEEeC
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLAD---HMIGNVYVQFR 175 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~---~~~G~vyV~F~ 175 (324)
++|++|+|.||++..++ .+ ..+|++|++||+++|++||+|++|.|+.+..+ +++|+|||+|.
T Consensus 3 ~ps~vl~L~Nm~~~~~l------------~~---d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~ 67 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEEL------------LD---DEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFT 67 (105)
T ss_dssp SCCSEEEEESSCCGGGS------------SS---HHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEES
T ss_pred CCCeEEEEECCCCHHHc------------cC---hHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEEC
Confidence 47999999999995442 11 24589999999999999999999999987643 57999999999
Q ss_pred cHHHHHHHHHHhcCCeeCCeEEEEEeecCCCchh
Q 040106 176 EEEQAAAALHALQGRFYSGRPIIVEFSPVTDFRE 209 (324)
Q Consensus 176 s~edA~~Ai~~LnGR~f~GR~I~vefs~v~~f~e 209 (324)
+.++|.+|+++|||++|+||+|.|.|++++.|..
T Consensus 68 ~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~~~f~~ 101 (105)
T 3v4m_A 68 SVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHR 101 (105)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEEECHHHHHT
T ss_pred CHHHHHHHHHHhCCCEeCCCEEEEEEeCHHHHhh
Confidence 9999999999999999999999999999988864
No 3
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.87 E-value=2.6e-22 Score=166.01 Aligned_cols=97 Identities=28% Similarity=0.461 Sum_probs=85.4
Q ss_pred CCCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeC
Q 040106 96 NRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFR 175 (324)
Q Consensus 96 ~~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~ 175 (324)
..|.+|+||+|.|||+..++ .+ .++|++|++||+++|++||+|++|.|+.+. ++|+|||+|.
T Consensus 2 ~~p~ps~vv~L~Nm~~~~e~-----------~d----~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~ 63 (114)
T 3s6e_A 2 VQPLATQCFQLSNMFNPQTE-----------EE----VGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCP 63 (114)
T ss_dssp CCCCCCSEEEEESSCCTTTC-----------CS----TTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECS
T ss_pred CCCCCCcEEEEECCCChHHc-----------cC----hhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEEC
Confidence 35789999999999995442 11 246799999999999999999999998764 5999999999
Q ss_pred cHHHHHHHHHHhcCCeeCCeEEEEEeecCCCchhh
Q 040106 176 EEEQAAAALHALQGRFYSGRPIIVEFSPVTDFREA 210 (324)
Q Consensus 176 s~edA~~Ai~~LnGR~f~GR~I~vefs~v~~f~ea 210 (324)
+.++|.+|++.|||++|+||+|.|+|+++++|...
T Consensus 64 ~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~~~y~~~ 98 (114)
T 3s6e_A 64 SIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNL 98 (114)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEEECHHHHHHH
T ss_pred CHHHHHHHHHHhCCCEECCEEEEEEEEcHHHHHHh
Confidence 99999999999999999999999999999998753
No 4
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.85 E-value=1.3e-21 Score=158.88 Aligned_cols=95 Identities=25% Similarity=0.399 Sum_probs=81.2
Q ss_pred CCCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC--CCCceeEEEEE
Q 040106 96 NRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL--ADHMIGNVYVQ 173 (324)
Q Consensus 96 ~~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~--~~~~~G~vyV~ 173 (324)
+.|++|+||+|.|||+..+ ++ +++++||+++|++||+|++|.|+.+. +++++|+|||+
T Consensus 3 i~~~~s~~l~l~Nm~~~~~------------l~--------dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~ 62 (105)
T 2pe8_A 3 MGKCPTKVVLLRNMVGAGE------------VD--------EDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLE 62 (105)
T ss_dssp GGGSCCSEEEEESSSCSCC------------C-----------CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEE
T ss_pred CCCCCCCEEEEEcCCChHH------------hh--------HHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEE
Confidence 3467899999999996322 11 34568999999999999999999874 35789999999
Q ss_pred eCcHHHHHHHHHHhcCCeeCCeEEEEEeecCCCchhh
Q 040106 174 FREEEQAAAALHALQGRFYSGRPIIVEFSPVTDFREA 210 (324)
Q Consensus 174 F~s~edA~~Ai~~LnGR~f~GR~I~vefs~v~~f~ea 210 (324)
|.+.++|.+|++.|||++|+||+|.|.|++.+.|...
T Consensus 63 f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~~~f~~~ 99 (105)
T 2pe8_A 63 FERVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVL 99 (105)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECCHHHHHTT
T ss_pred ECCHHHHHHHHHHHCCCEECCcEEEEEEcCHHHhhhh
Confidence 9999999999999999999999999999998888754
No 5
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.85 E-value=9.8e-22 Score=163.33 Aligned_cols=91 Identities=25% Similarity=0.490 Sum_probs=80.0
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCC-----CCceeEEEEE
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLA-----DHMIGNVYVQ 173 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~-----~~~~G~vyV~ 173 (324)
.+|+||+|.|||+..++ .+++++||+++|++||+|.+|.|+.+.. ++++|+|||+
T Consensus 18 ~ps~vl~L~Nm~~~~el--------------------~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~ 77 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDI--------------------DDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVE 77 (118)
T ss_dssp HSCCEEEEESCSCGGGC--------------------CTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEE
T ss_pred CCCCEEEEECCCCHHHH--------------------HHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEE
Confidence 47999999999984321 1457799999999999999999988742 3578999999
Q ss_pred eCcHHHHHHHHHHhcCCeeCCeEEEEEeecCCCchh
Q 040106 174 FREEEQAAAALHALQGRFYSGRPIIVEFSPVTDFRE 209 (324)
Q Consensus 174 F~s~edA~~Ai~~LnGR~f~GR~I~vefs~v~~f~e 209 (324)
|.+.++|.+|+++|||++|+||+|.|.|+++++|..
T Consensus 78 F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~~~f~~ 113 (118)
T 3ue2_A 78 FSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDN 113 (118)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHT
T ss_pred ECCHHHHHHHHHHHCCCEECCcEEEEEEcChHhccc
Confidence 999999999999999999999999999999998874
No 6
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.1e-20 Score=150.71 Aligned_cols=103 Identities=29% Similarity=0.434 Sum_probs=88.5
Q ss_pred CcCCCCCCCCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCcee
Q 040106 89 DRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIG 168 (324)
Q Consensus 89 d~CSr~H~~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G 168 (324)
.-|++.|..|++|+||+|+|||..+++ .+-.++|+++++||+++|++||+|.+|.|++. +++|
T Consensus 3 ~g~~~~~~~~~~s~~l~l~Nl~~~~~~--------------~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~---~~~G 65 (112)
T 2dit_A 3 SGSSGGPSRMRHERVVIIKNMFHPMDF--------------EDDPLVLNEIREDLRVECSKFGQIRKLLLFDR---HPDG 65 (112)
T ss_dssp SSCCSCCCCCCSCCEEEEESSCCTTHH--------------HHCSHHHHHHHHHHHHHGGGTSCCSEEEEETT---CTTC
T ss_pred CcccCCCCCCCCceEEEEEcCCCHHHh--------------ccCHHHHHHHHHHHHHHHHccCCEeEEEEecC---CCCE
Confidence 468899999999999999999986542 11124689999999999999999999988543 3799
Q ss_pred EEEEEeCcHHHHHHHHHHhcCCeeCCeEEEEEeec-CCCch
Q 040106 169 NVYVQFREEEQAAAALHALQGRFYSGRPIIVEFSP-VTDFR 208 (324)
Q Consensus 169 ~vyV~F~s~edA~~Ai~~LnGR~f~GR~I~vefs~-v~~f~ 208 (324)
++||+|.+.++|.+|++.|||++|+|++|.|.|+. .++|.
T Consensus 66 ~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 66 VASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQ 106 (112)
T ss_dssp EEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCCSS
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCcc
Confidence 99999999999999999999999999999999974 45664
No 7
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.70 E-value=2.6e-17 Score=152.45 Aligned_cols=126 Identities=20% Similarity=0.331 Sum_probs=90.7
Q ss_pred CcccccccccccccCCCcCCCCCCCCCCCCeeEec---cccCCCCC--CCC------C---CCCCC-----CCCChhHH-
Q 040106 73 RVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLS---NMYQRPDM--ITP------G---VDAQG-----QPIDPRKI- 132 (324)
Q Consensus 73 ~vnC~Fy~K~GACRhGd~CSr~H~~P~~S~tLlL~---NMy~~p~~--~~~------~---~d~~~-----~eld~eel- 132 (324)
...|+||.| |+|++|+.|+.+|..|+....+.+. ++.+.... ... + .+... ..|... +
T Consensus 70 ~~~C~ffak-G~C~~G~~C~y~H~lPt~~d~~~~~~~~~~~D~fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~-~~ 147 (240)
T 3u1l_A 70 LFFCLFFAK-GMCCLGPKCEYLHHIPDEEDIGKLALRTEVLDCFGREKFADYREDMGGIGSFRKKNKTLYVGGIDGA-LN 147 (240)
T ss_dssp CSBCHHHHT-TCCSCGGGCSSBBSCCCHHHHHHHHHHCSSBCTTSSBCGGGTC---------CCCCCEEEEECTTGG-GT
T ss_pred CeEcCcccc-CCCCCCCCCCccCCCCCccchhhhcccccCcccccchhcccchhcccCcCccccCCceeecCCCChh-hh
Confidence 468999999 9999999999999999977765333 33332110 000 0 00000 012111 0
Q ss_pred --HhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHHHHHHHHHHhcCCee------------CCeEEE
Q 040106 133 --QEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQAAAALHALQGRFY------------SGRPII 198 (324)
Q Consensus 133 --~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~edA~~Ai~~LnGR~f------------~GR~I~ 198 (324)
.-....++++|.+.|++||+|++|.|+.+ +|++||+|.+.++|+.|+++|||..| +|++|.
T Consensus 148 ~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-----kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~ 222 (240)
T 3u1l_A 148 SKHLKPAQIESRIRFVFSRLGDIDRIRYVES-----KNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLL 222 (240)
T ss_dssp TCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCE
T ss_pred cccccccCcHHHHHHHHHccCCEEEEEEECC-----CCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEE
Confidence 00013367999999999999999999864 89999999999999999999999999 899999
Q ss_pred EEeecCC
Q 040106 199 VEFSPVT 205 (324)
Q Consensus 199 vefs~v~ 205 (324)
|.++...
T Consensus 223 V~wA~~~ 229 (240)
T 3u1l_A 223 VKWANED 229 (240)
T ss_dssp EEECC--
T ss_pred EEEccCC
Confidence 9998653
No 8
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.68 E-value=3.9e-17 Score=146.11 Aligned_cols=73 Identities=25% Similarity=0.535 Sum_probs=66.8
Q ss_pred HhHHHHHHHHHhccCCeeEEEEeeCCCC-----CceeEEEEEeCcHHHHHHHHHHhcCCeeCCeEEEEEeecCCCchh
Q 040106 137 EDFYEDIFEELSKFGEIECLNVCDNLAD-----HMIGNVYVQFREEEQAAAALHALQGRFYSGRPIIVEFSPVTDFRE 209 (324)
Q Consensus 137 d~~~eDV~eEf~kfG~I~~V~V~~n~~~-----~~~G~vyV~F~s~edA~~Ai~~LnGR~f~GR~I~vefs~v~~f~e 209 (324)
+++.+||+++|++||+|.+|.|+.+..+ +++|+|||+|.+.++|.+|++.|||++|+||+|.|.|+++++|+.
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~f~~ 217 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDN 217 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHHHHT
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHHhhh
Confidence 3456899999999999999999876433 799999999999999999999999999999999999999999875
No 9
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.65 E-value=2e-15 Score=149.85 Aligned_cols=82 Identities=15% Similarity=0.295 Sum_probs=71.0
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCcH
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFREE 177 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s~ 177 (324)
..+.||+|.||-... + .++|.++|++||+|+.|.|+.+. ++.++|||||+|.+.
T Consensus 100 ~~~~~lfV~nL~~~~--------------t-----------e~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~ 154 (437)
T 3pgw_S 100 DAFKTLFVARVNYDT--------------T-----------ESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHE 154 (437)
T ss_pred CCCCEEEEeCCCCCC--------------C-----------HHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccH
Confidence 456799999985532 1 26899999999999999998874 667899999999999
Q ss_pred HHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 040106 178 EQAAAALHALQGRFYSGRPIIVEFSPVT 205 (324)
Q Consensus 178 edA~~Ai~~LnGR~f~GR~I~vefs~v~ 205 (324)
++|.+||..|||.+|+|++|.|+|+...
T Consensus 155 e~A~~Ai~~lng~~i~gr~i~V~~a~~~ 182 (437)
T 3pgw_S 155 RDMHSAYKHADGKKIDGRRVLVDVERGR 182 (437)
T ss_pred HHHHHHHHHcCCCEECCEEEEEEEeCCC
Confidence 9999999999999999999999998543
No 10
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.56 E-value=1.7e-14 Score=117.26 Aligned_cols=83 Identities=13% Similarity=0.115 Sum_probs=72.6
Q ss_pred CCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCc
Q 040106 98 PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFRE 176 (324)
Q Consensus 98 P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s 176 (324)
|.++.+|.|.||-.+-. +++|++.|++||+|.+|.|+.+. ++.++|++||+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~t-------------------------e~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~ 57 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVR-------------------------ETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTS 57 (110)
T ss_dssp CSCCCEEEEESCCTTCC-------------------------HHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred CCCCcEEEEECCCCCCC-------------------------HHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECC
Confidence 45688999999865422 26899999999999999998875 47799999999999
Q ss_pred HHHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 040106 177 EEQAAAALHALQGRFYSGRPIIVEFSPVT 205 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~GR~I~vefs~v~ 205 (324)
.++|.+|++.|||..++|++|.|+++...
T Consensus 58 ~~~A~~Ai~~lng~~~~gr~i~V~~a~~~ 86 (110)
T 3s8s_A 58 TRGAKETVKNLHLTSVMGNIIHAQLDIKG 86 (110)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEECSTT
T ss_pred HHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 99999999999999999999999998644
No 11
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.53 E-value=5.2e-14 Score=112.10 Aligned_cols=64 Identities=22% Similarity=0.407 Sum_probs=59.3
Q ss_pred HHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCcHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 141 EDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFREEEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 141 eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
+||++.|++||+|.+|.|+.+. ++.++|++||+|.+.++|.+|++.|||..++|++|.|+|+.+
T Consensus 34 ~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 34 DELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp HHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred HHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 6899999999999999998875 467899999999999999999999999999999999999853
No 12
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.5e-13 Score=107.92 Aligned_cols=83 Identities=23% Similarity=0.247 Sum_probs=72.8
Q ss_pred CCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCc
Q 040106 97 RPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRE 176 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s 176 (324)
.+..+.+|+|.||-..-. ++||.+.|++||+|.+|.|+.+.++..+|++||+|.+
T Consensus 13 ~~~~~~~l~v~nlp~~~t-------------------------~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~ 67 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCT-------------------------KEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYEN 67 (100)
T ss_dssp SCCCCSCEEEESCCTTCC-------------------------HHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESS
T ss_pred cCCCCCEEEEeCCCCCCC-------------------------HHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECC
Confidence 345678999999865422 2689999999999999999988777789999999999
Q ss_pred HHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 177 EEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
.++|.+|+..|||..++|++|.|.++..
T Consensus 68 ~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 95 (100)
T 2do4_A 68 ESQASQAVMKMDGMTIKENIIKVAISNS 95 (100)
T ss_dssp HHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred HHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 9999999999999999999999999854
No 13
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.51 E-value=7.1e-14 Score=106.11 Aligned_cols=80 Identities=23% Similarity=0.331 Sum_probs=70.0
Q ss_pred CCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeC-CCCCceeEEEEEeCc
Q 040106 98 PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDN-LADHMIGNVYVQFRE 176 (324)
Q Consensus 98 P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n-~~~~~~G~vyV~F~s 176 (324)
+..+.+|.|.||-..- + +++|.+.|++||+|.+|.|+.+ .++..+|++||+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~--------------~-----------~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 58 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEV--------------D-----------DKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFEL 58 (85)
T ss_dssp CCCSSEEEEECCCTTC--------------C-----------HHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESS
T ss_pred CCCCCEEEEECCCCCC--------------C-----------HHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECC
Confidence 4678899999986532 1 2689999999999999999876 456689999999999
Q ss_pred HHHHHHHHHHhcCCeeCCeEEEEEee
Q 040106 177 EEQAAAALHALQGRFYSGRPIIVEFS 202 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~GR~I~vefs 202 (324)
.++|.+|++.|||..++|++|.|+++
T Consensus 59 ~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 59 AEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 99999999999999999999999986
No 14
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.2e-13 Score=106.93 Aligned_cols=84 Identities=21% Similarity=0.243 Sum_probs=72.4
Q ss_pred CCCCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEE
Q 040106 95 HNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQ 173 (324)
Q Consensus 95 H~~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~ 173 (324)
...|..+.+|+|.||-..-. + ++|++.|++||+|..|.|+.+. ++..+|++||+
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t--------------~-----------~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~ 63 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTT--------------E-----------RDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVY 63 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCC--------------H-----------HHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEE
T ss_pred CCCCCCCCEEEEECCCCCCC--------------H-----------HHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEE
Confidence 34566788999999865421 2 6899999999999999998875 45789999999
Q ss_pred eCcHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 040106 174 FREEEQAAAALHALQGRFYSGRPIIVEFSP 203 (324)
Q Consensus 174 F~s~edA~~Ai~~LnGR~f~GR~I~vefs~ 203 (324)
|.+.++|.+|+..|||..|+|++|.|.|+.
T Consensus 64 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 64 FENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp ESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred ECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 999999999999999999999999999975
No 15
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.50 E-value=1.2e-13 Score=109.64 Aligned_cols=80 Identities=24% Similarity=0.356 Sum_probs=70.8
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHH
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEE 178 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~e 178 (324)
..+.+|+|.||-... + ++||.+.|++||+|++|.|+.+.++..+|++||+|.+.+
T Consensus 27 ~~~~~l~V~nlp~~~--------------t-----------~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~ 81 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGV--------------S-----------DADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKA 81 (107)
T ss_dssp CCSEEEEEESCCTTC--------------C-----------HHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHH
T ss_pred CCCCEEEEeCCCCCC--------------C-----------HHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHH
Confidence 467789999985532 1 268999999999999999998877778999999999999
Q ss_pred HHHHHHHHhcCCeeCCeEEEEEeec
Q 040106 179 QAAAALHALQGRFYSGRPIIVEFSP 203 (324)
Q Consensus 179 dA~~Ai~~LnGR~f~GR~I~vefs~ 203 (324)
+|.+|++.|||..++|++|.|.|+.
T Consensus 82 ~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 82 DALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp HHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 9999999999999999999999975
No 16
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.50 E-value=8.7e-14 Score=107.93 Aligned_cols=81 Identities=22% Similarity=0.315 Sum_probs=71.3
Q ss_pred CCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcH
Q 040106 98 PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREE 177 (324)
Q Consensus 98 P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~ 177 (324)
+..+.+|+|.||-..-. ++||++.|++||+|.+|.|+.+..+..+|++||+|.+.
T Consensus 13 ~~~~~~l~v~nlp~~~~-------------------------~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~ 67 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVR-------------------------EEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHP 67 (95)
T ss_dssp TTGGGEEEEECCCTTCC-------------------------HHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESST
T ss_pred CCCCCEEEEECCCCCCC-------------------------HHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCH
Confidence 34677999999865321 26899999999999999999887777899999999999
Q ss_pred HHHHHHHHHhcCCeeCCeEEEEEeec
Q 040106 178 EQAAAALHALQGRFYSGRPIIVEFSP 203 (324)
Q Consensus 178 edA~~Ai~~LnGR~f~GR~I~vefs~ 203 (324)
++|.+|+..|||..++|++|.|.++.
T Consensus 68 ~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 68 ESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp HHHHHHHHHHTTCEETTEECEEECCC
T ss_pred HHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 99999999999999999999999974
No 17
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.50 E-value=6e-14 Score=111.28 Aligned_cols=85 Identities=11% Similarity=0.130 Sum_probs=73.5
Q ss_pred CCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCC-CCceeEEEEEeCcHH
Q 040106 100 ISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLA-DHMIGNVYVQFREEE 178 (324)
Q Consensus 100 ~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~-~~~~G~vyV~F~s~e 178 (324)
.+.||+|.||-..+. +.++.++++|.+.|++||+|.+|.|+.+.. +.++|++||+|.+.+
T Consensus 5 ~~~~vfV~nLp~v~~-------------------~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~ 65 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPS-------------------AKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMN 65 (100)
T ss_dssp GGGEEEEESCCCCBG-------------------GGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHH
T ss_pred cCcEEEEeCCCcCCh-------------------HHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHH
Confidence 467899999854221 134677899999999999999999988754 779999999999999
Q ss_pred HHHHHHHHhcCCeeCC-eEEEEEeec
Q 040106 179 QAAAALHALQGRFYSG-RPIIVEFSP 203 (324)
Q Consensus 179 dA~~Ai~~LnGR~f~G-R~I~vefs~ 203 (324)
+|.+|++.|||..|+| ++|.|.++.
T Consensus 66 ~A~~Ai~~lng~~~~g~r~l~V~~a~ 91 (100)
T 3ns6_A 66 DAKKIIKSFHGKRLDLKHRLFLYTMK 91 (100)
T ss_dssp HHHHHHHHHTTCBSSSSCBCEEEESH
T ss_pred HHHHHHHHhCCcccCCCeEEEEEECc
Confidence 9999999999999999 999999974
No 18
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.2e-13 Score=107.16 Aligned_cols=82 Identities=21% Similarity=0.281 Sum_probs=71.8
Q ss_pred CCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCc
Q 040106 98 PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFRE 176 (324)
Q Consensus 98 P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s 176 (324)
|..+.+|+|.||-..- + +++|++.|++||+|.+|.|+.+. ++..+|++||+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~--------------t-----------~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~ 56 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNI--------------T-----------EDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSD 56 (95)
T ss_dssp CSCCCEEEEESCCTTC--------------C-----------HHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESC
T ss_pred CCCCcEEEEeCCCCCC--------------C-----------HHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECC
Confidence 4678899999986532 1 26899999999999999998874 46789999999999
Q ss_pred HHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 177 EEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
.++|.+|++.|||..++|++|.|.++..
T Consensus 57 ~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 84 (95)
T 2dnz_A 57 SECARRALEQLNGFELAGRPMRVGHVTE 84 (95)
T ss_dssp HHHHHHHHHHHTTCCSSSSCCEEEESSC
T ss_pred HHHHHHHHHHhCCCeeCCcEEEEEEccc
Confidence 9999999999999999999999999854
No 19
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.49 E-value=1.8e-13 Score=107.48 Aligned_cols=84 Identities=23% Similarity=0.421 Sum_probs=73.1
Q ss_pred CCCCCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeE--------EEEeeCC-CC
Q 040106 94 LHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIEC--------LNVCDNL-AD 164 (324)
Q Consensus 94 ~H~~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~--------V~V~~n~-~~ 164 (324)
.+..|....+|.|.||-.+-. ++||++.|++||.|.. |.|+.+. ++
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t-------------------------~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g 60 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENVT-------------------------IESVADYFKQIGIIKTNKKTGQPMINLYTDRETG 60 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSCC-------------------------HHHHHHHHTTTSCBCEETTTTEESEEEEECTTTC
T ss_pred CCCCCCCCCEEEEeCCCCCCC-------------------------HHHHHHHHHHhCCEeeccccccccEEEEecCCCC
Confidence 455667888999999965421 2789999999999999 9998874 56
Q ss_pred CceeEEEEEeCcHHHHHHHHHHhcCCeeCCeEEEEEee
Q 040106 165 HMIGNVYVQFREEEQAAAALHALQGRFYSGRPIIVEFS 202 (324)
Q Consensus 165 ~~~G~vyV~F~s~edA~~Ai~~LnGR~f~GR~I~vefs 202 (324)
..+|++||+|.+.++|.+|++.|||..++|++|.|+++
T Consensus 61 ~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 61 KLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp SEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 78999999999999999999999999999999999986
No 20
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.4e-13 Score=106.57 Aligned_cols=81 Identities=17% Similarity=0.316 Sum_probs=70.4
Q ss_pred CCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeC
Q 040106 97 RPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFR 175 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~ 175 (324)
.+..+.+|+|.||-..- + ++||++.|++||+|.+|.|+.+. ++..+|++||+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~--------------t-----------~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~ 66 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSL--------------T-----------NNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFL 66 (94)
T ss_dssp CCCCTTSEEEESCCTTS--------------C-----------HHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEES
T ss_pred CCCCCCEEEEECCCCCC--------------C-----------HHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEEC
Confidence 45677899999986432 1 26899999999999999998875 3668999999999
Q ss_pred cHHHHHHHHHHhcCCeeCCeEEEEEee
Q 040106 176 EEEQAAAALHALQGRFYSGRPIIVEFS 202 (324)
Q Consensus 176 s~edA~~Ai~~LnGR~f~GR~I~vefs 202 (324)
+.++|.+|++.|||..|+|++|.|+|+
T Consensus 67 ~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 67 DKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 999999999999999999999999986
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.48 E-value=1.4e-13 Score=111.80 Aligned_cols=81 Identities=22% Similarity=0.370 Sum_probs=68.3
Q ss_pred CCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcH
Q 040106 98 PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREE 177 (324)
Q Consensus 98 P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~ 177 (324)
|..+.+|+|.||-..- ++ +||++.|++||+|.+|.|+.+. +..+|++||+|.+.
T Consensus 2 P~~~~~lfV~nLp~~~--------------te-----------~~L~~~F~~~G~v~~v~i~~d~-~~~kg~afV~f~~~ 55 (115)
T 4f25_A 2 PLGSGNIFIKNLDKSI--------------DN-----------KALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQ 55 (115)
T ss_dssp ---CCEEEEESCCTTC--------------CH-----------HHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESCH
T ss_pred CCCCCEEEECCCCCCC--------------CH-----------HHHHHHHhccCCEEEEEEeecC-CCCCceEEEEECCH
Confidence 5667789999995532 22 7899999999999999998875 34799999999999
Q ss_pred HHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 178 EQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 178 edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
++|.+|++.|||..++|++|.|.++..
T Consensus 56 ~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 56 EAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred HHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 999999999999999999999999754
No 22
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.48 E-value=2e-13 Score=104.04 Aligned_cols=81 Identities=17% Similarity=0.306 Sum_probs=68.9
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCcH
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFREE 177 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s~ 177 (324)
..+.+|+|.||-.+- + ++||++.|++||+|.+|.|+.+. ++..+|++||+|.+.
T Consensus 4 ~~~~~l~v~nlp~~~--------------t-----------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 58 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEI--------------T-----------TAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNK 58 (87)
T ss_dssp --CEEEEEESCCTTC--------------C-----------HHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCceEEEEeCCCCCC--------------C-----------HHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCH
Confidence 356689999886532 1 26899999999999999998874 667899999999999
Q ss_pred HHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 178 EQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 178 edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
++|.+|++.|||..++|++|.|.++..
T Consensus 59 ~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 59 WDAENAIQQMGGQWLGGRQIRTNWATR 85 (87)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEEEC-
T ss_pred HHHHHHHHHcCCCEECCeEEEEEecCC
Confidence 999999999999999999999999753
No 23
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.48 E-value=1.9e-13 Score=106.72 Aligned_cols=83 Identities=22% Similarity=0.309 Sum_probs=71.5
Q ss_pred CCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCcHH
Q 040106 100 ISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFREEE 178 (324)
Q Consensus 100 ~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s~e 178 (324)
++.+|+|.||-..- + ++||.+.|++||.|.+|.|+.+. ++..+|++||+|.+.+
T Consensus 1 P~~~l~V~nLp~~~--------------t-----------~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~ 55 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQ--------------T-----------EEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLE 55 (96)
T ss_dssp CCSEEEEESCCTTC--------------C-----------HHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHH
T ss_pred CCcEEEEECCCCCC--------------C-----------HHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHH
Confidence 47799999985432 1 26899999999999999998874 4678999999999999
Q ss_pred HHHHHHHHhcCCeeCCeEEEEEeecCCCc
Q 040106 179 QAAAALHALQGRFYSGRPIIVEFSPVTDF 207 (324)
Q Consensus 179 dA~~Ai~~LnGR~f~GR~I~vefs~v~~f 207 (324)
+|.+|++.|||..++|++|.|.++.....
T Consensus 56 ~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 84 (96)
T 2x1f_A 56 SSASAVRNLNGYQLGSRFLKCGYSSNSDI 84 (96)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECSCSSG
T ss_pred HHHHHHHHhCCCeECCeEEEEEEcCCCCC
Confidence 99999999999999999999999865443
No 24
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=1.6e-13 Score=107.41 Aligned_cols=84 Identities=23% Similarity=0.285 Sum_probs=72.6
Q ss_pred CCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCc
Q 040106 98 PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFRE 176 (324)
Q Consensus 98 P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s 176 (324)
+..+.+|+|.||-..-. ++||.+.|++||+|.+|.|+.+. ++..+|++||+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t-------------------------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 59 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSS-------------------------EEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMF 59 (99)
T ss_dssp CCSCEEEEEECCCTTCC-------------------------HHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESS
T ss_pred CCCCCEEEEeCCCCCCC-------------------------HHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECC
Confidence 34678999999865321 26899999999999999998875 66789999999999
Q ss_pred HHHHHHHHHHhcCCeeCCeEEEEEeecCCC
Q 040106 177 EEQAAAALHALQGRFYSGRPIIVEFSPVTD 206 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~GR~I~vefs~v~~ 206 (324)
.++|.+|+..|||..|+|++|.|.++....
T Consensus 60 ~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 89 (99)
T 1whw_A 60 PEHAVKAYAEVDGQVFQGRMLHVLPSTIKK 89 (99)
T ss_dssp HHHHHHHHHHTTTEESSSCEEEEEECCCCS
T ss_pred HHHHHHHHHHhCCCEECCcEEEEEEcCCCc
Confidence 999999999999999999999999986543
No 25
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.8e-13 Score=107.97 Aligned_cols=84 Identities=23% Similarity=0.311 Sum_probs=73.3
Q ss_pred CCCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeC
Q 040106 96 NRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFR 175 (324)
Q Consensus 96 ~~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~ 175 (324)
..+..+.+|+|.||-.+-. +++|++.|++||+|..|.|+.+ ++..+|++||+|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t-------------------------~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~ 63 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGID-------------------------DERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFS 63 (103)
T ss_dssp CCCSSCCCEEEECCCTTCC-------------------------HHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEES
T ss_pred cCCCCCCEEEEeCCCCCCC-------------------------HHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEEC
Confidence 3456788999999865421 2689999999999999999988 6778999999999
Q ss_pred cHHHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 040106 176 EEEQAAAALHALQGRFYSGRPIIVEFSPVT 205 (324)
Q Consensus 176 s~edA~~Ai~~LnGR~f~GR~I~vefs~v~ 205 (324)
+.++|.+|+..|||..|+|++|.|.++...
T Consensus 64 ~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2d9p_A 64 SPEEATKAVTEMNGRIVATKPLYVALAQRK 93 (103)
T ss_dssp SHHHHHHHHHHHTTCBSSSSBCEEEECSSC
T ss_pred CHHHHHHHHHHhCCCEeCCcEEEEEEeccc
Confidence 999999999999999999999999998553
No 26
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.48 E-value=3.5e-14 Score=111.13 Aligned_cols=79 Identities=20% Similarity=0.256 Sum_probs=68.0
Q ss_pred CCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccC-CeeEEEEeeCC-CCCceeEEEEEeCcHH
Q 040106 101 SPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFG-EIECLNVCDNL-ADHMIGNVYVQFREEE 178 (324)
Q Consensus 101 S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG-~I~~V~V~~n~-~~~~~G~vyV~F~s~e 178 (324)
|.||+|+||-.+-. ++||++.|++|| +|.+|.|+.+. ++.++|++||+|.+.+
T Consensus 1 S~~i~v~nLp~~~t-------------------------e~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~ 55 (91)
T 2lxi_A 1 SNIVMLRMLPQAAT-------------------------EDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQ 55 (91)
T ss_dssp CCEEEEETCCSSCC-------------------------HHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHH
T ss_pred CCEEEEeCCCCCCC-------------------------HHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHH
Confidence 68999999966422 278999999999 89999998874 4678999999999999
Q ss_pred HHHHHHHHhc-CCeeCCeEEEEEeecC
Q 040106 179 QAAAALHALQ-GRFYSGRPIIVEFSPV 204 (324)
Q Consensus 179 dA~~Ai~~Ln-GR~f~GR~I~vefs~v 204 (324)
+|.+|++.|+ |..++|++|.|+|+..
T Consensus 56 ~A~~Ai~~~~~~~~~~gr~i~V~~a~~ 82 (91)
T 2lxi_A 56 DATRWMEANQHSLNILGQKVSMHYSDP 82 (91)
T ss_dssp HHHHHHHTTTTEEEETTEEEEEECCCS
T ss_pred HHHHHHHhcCCCeEECCEEEEEEEcCC
Confidence 9999999885 5679999999999854
No 27
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.48 E-value=2.6e-13 Score=102.49 Aligned_cols=64 Identities=20% Similarity=0.358 Sum_probs=59.4
Q ss_pred HHHHHHHhccCCeeEEEEeeC-CCCCceeEEEEEeCcHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 141 EDIFEELSKFGEIECLNVCDN-LADHMIGNVYVQFREEEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 141 eDV~eEf~kfG~I~~V~V~~n-~~~~~~G~vyV~F~s~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
+||.+.|++||+|.+|.|+.+ .++..+|++||+|.+.++|.+|+..|||..++|++|.|.++..
T Consensus 16 ~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 16 ETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp HHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred HHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 689999999999999999877 4567899999999999999999999999999999999999854
No 28
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=3.9e-13 Score=107.75 Aligned_cols=83 Identities=17% Similarity=0.285 Sum_probs=72.6
Q ss_pred CCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCc
Q 040106 97 RPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRE 176 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s 176 (324)
....+.+|+|.||-..-. ++||++.|++||+|++|.|+.+.++..+|++||+|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~~-------------------------~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~ 65 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVG-------------------------WKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQ 65 (114)
T ss_dssp CCCCCSCEEEESCCTTCC-------------------------HHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESS
T ss_pred cCCCCCEEEEeCCCCCCC-------------------------HHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECC
Confidence 335678999999865321 2689999999999999999988777789999999999
Q ss_pred HHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 177 EEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
.++|.+|+..|||..|+|++|.|.++..
T Consensus 66 ~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 66 SIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred HHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 9999999999999999999999999754
No 29
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.48 E-value=5.5e-14 Score=106.74 Aligned_cols=79 Identities=18% Similarity=0.256 Sum_probs=66.2
Q ss_pred CCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHHHH
Q 040106 101 SPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQA 180 (324)
Q Consensus 101 S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~edA 180 (324)
+.+|+|.||-.... +.++.++++|.+.|++||+|.+|.|+ ..++.++|++||+|.+.++|
T Consensus 1 ~~~l~V~nLp~~~~-------------------~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A 60 (81)
T 2krb_A 1 DSVIVVDNVPQVGP-------------------DRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHA 60 (81)
T ss_dssp CCEEEEESCCCCCT-------------------TTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHH
T ss_pred CCEEEEeCCCCCcH-------------------HHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHH
Confidence 46899999843211 12355779999999999999999998 44567899999999999999
Q ss_pred HHHHHHhcCCeeCCe-EEEE
Q 040106 181 AAALHALQGRFYSGR-PIIV 199 (324)
Q Consensus 181 ~~Ai~~LnGR~f~GR-~I~v 199 (324)
.+|++.|||..|+|+ +|.|
T Consensus 61 ~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 61 VDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp HHHHTTSSSCCCSSSSCCCC
T ss_pred HHHHHHhcCcccCCceeEEe
Confidence 999999999999999 8865
No 30
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.1e-13 Score=107.50 Aligned_cols=84 Identities=21% Similarity=0.409 Sum_probs=72.5
Q ss_pred CCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEE-EEeeC-CCCCceeEEEEEeC
Q 040106 98 PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECL-NVCDN-LADHMIGNVYVQFR 175 (324)
Q Consensus 98 P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V-~V~~n-~~~~~~G~vyV~F~ 175 (324)
+..+.+|+|.||-..-. +++|.+.|++||+|.+| .|+.+ .++..+|++||+|.
T Consensus 2 ~~~~~~l~V~nLp~~~t-------------------------~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~ 56 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEID-------------------------EKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFA 56 (96)
T ss_dssp CSCCCEEEEECCCTTCC-------------------------HHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBS
T ss_pred CCCCCEEEEeCCCCCCC-------------------------HHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEEC
Confidence 35788999999865421 26899999999999999 99887 56678999999999
Q ss_pred cHHHHHHHHHHhcCCeeCCeEEEEEeecCCC
Q 040106 176 EEEQAAAALHALQGRFYSGRPIIVEFSPVTD 206 (324)
Q Consensus 176 s~edA~~Ai~~LnGR~f~GR~I~vefs~v~~ 206 (324)
+.++|.+|+..|||..++|++|.|.++....
T Consensus 57 ~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 87 (96)
T 1x5t_A 57 SFDASDAAIEAMNGQYLCNRPITVSYAFKKD 87 (96)
T ss_dssp SHHHHHHHHHTTTTCEETTEECEEEESCCCC
T ss_pred CHHHHHHHHHHcCCCEECCEEEEEEEecccC
Confidence 9999999999999999999999999986543
No 31
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.47 E-value=3.3e-13 Score=106.70 Aligned_cols=84 Identities=24% Similarity=0.376 Sum_probs=72.8
Q ss_pred CCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCc
Q 040106 97 RPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRE 176 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s 176 (324)
.+..+.+|+|.||-.+- + +++|.+.|++||+|++|.|+.+.++..+|++||+|.+
T Consensus 11 ~~~~~~~l~v~nLp~~~--------------t-----------~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~ 65 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQ--------------S-----------EEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSS 65 (105)
T ss_dssp SCCCCCEEEEESCCTTC--------------C-----------HHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESS
T ss_pred cCCCCCEEEEeCCCCCC--------------C-----------HHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCC
Confidence 34568899999985432 1 2689999999999999999988777789999999999
Q ss_pred HHHHHHHHHHhcCCeeCC---eEEEEEeecCC
Q 040106 177 EEQAAAALHALQGRFYSG---RPIIVEFSPVT 205 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~G---R~I~vefs~v~ 205 (324)
.++|.+|++.|||..+.| ++|.|.++...
T Consensus 66 ~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~ 97 (105)
T 2dnh_A 66 HTEAQAAIHALHGSQTMPGASSSLVVKFADTD 97 (105)
T ss_dssp HHHHHHHHHHHSSCCCCTTCSSCCEEEESCSS
T ss_pred HHHHHHHHHHHcCCccCCCCCccEEEEECccC
Confidence 999999999999999998 99999998543
No 32
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2.2e-13 Score=107.64 Aligned_cols=85 Identities=16% Similarity=0.219 Sum_probs=73.2
Q ss_pred CCCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEe
Q 040106 96 NRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQF 174 (324)
Q Consensus 96 ~~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F 174 (324)
..+..+.+|+|.||-.+.. +++|++.|++||+|..|.|+.+. ++..+|++||+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t-------------------------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f 64 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVS-------------------------EPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEF 64 (105)
T ss_dssp CCCCTTTEEEEECCCTTCC-------------------------HHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCC-------------------------HHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEE
Confidence 3456788999999955321 26899999999999999998875 567899999999
Q ss_pred CcHHHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 040106 175 REEEQAAAALHALQGRFYSGRPIIVEFSPVT 205 (324)
Q Consensus 175 ~s~edA~~Ai~~LnGR~f~GR~I~vefs~v~ 205 (324)
.+.++|.+|+..|||..|+|++|.|.++...
T Consensus 65 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 95 (105)
T 1x5u_A 65 LSEEDADYAIKIMDMIKLYGKPIRVNKASAH 95 (105)
T ss_dssp SSHHHHHHHHHHSSSCBCSSCBCEEEETTTT
T ss_pred CCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 9999999999999999999999999998543
No 33
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=4.9e-13 Score=105.52 Aligned_cols=85 Identities=24% Similarity=0.265 Sum_probs=72.5
Q ss_pred CCCCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEe
Q 040106 95 HNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQF 174 (324)
Q Consensus 95 H~~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F 174 (324)
...+..+.+|+|.||-..- + +++|++.|++||+|.+|.|+.+... .+|++||+|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~--------------t-----------~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f 62 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRF--------------R-----------DPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTF 62 (103)
T ss_dssp SCCSCCCCEEEEESCCTTC--------------C-----------HHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEE
T ss_pred CCCCCCCCEEEEeCCCCCC--------------C-----------HHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEE
Confidence 3445678899999985532 1 2689999999999999999887543 899999999
Q ss_pred CcHHHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 040106 175 REEEQAAAALHALQGRFYSGRPIIVEFSPVT 205 (324)
Q Consensus 175 ~s~edA~~Ai~~LnGR~f~GR~I~vefs~v~ 205 (324)
.+.++|.+|+..|||..|+|++|.|.++...
T Consensus 63 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 93 (103)
T 2cq3_A 63 ENSADADRAREKLHGTVVEGRKIEVNNATAR 93 (103)
T ss_dssp SCHHHHHHHHHHHTTCEETTEECEEEECCSS
T ss_pred CCHHHHHHHHHHhCCCEECCEEEEEEEcccC
Confidence 9999999999999999999999999998543
No 34
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.5e-13 Score=108.03 Aligned_cols=85 Identities=21% Similarity=0.292 Sum_probs=72.6
Q ss_pred CCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeC-CCCCceeEEEEEeC
Q 040106 97 RPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDN-LADHMIGNVYVQFR 175 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n-~~~~~~G~vyV~F~ 175 (324)
.+..+.+|+|.||-..- + +++|.+.|++||+|+.|.|+.+ .++..+|++||+|.
T Consensus 8 ~~~~~~~l~V~nLp~~~--------------t-----------~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 62 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEV--------------D-----------DKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFE 62 (102)
T ss_dssp SCCCCSCEEEESCCSSC--------------C-----------HHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCS
T ss_pred cCCCCCEEEEeCCCCCC--------------C-----------HHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEEC
Confidence 34578899999995532 1 2689999999999999999877 45678999999999
Q ss_pred cHHHHHHHHHHhcCCeeCCeEEEEEeecCCC
Q 040106 176 EEEQAAAALHALQGRFYSGRPIIVEFSPVTD 206 (324)
Q Consensus 176 s~edA~~Ai~~LnGR~f~GR~I~vefs~v~~ 206 (324)
+.++|.+|++.|||..|+|++|.|.++....
T Consensus 63 ~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 93 (102)
T 2cqb_A 63 LAEDAAAAIDNMNESELFGRTIRVNLAKPMR 93 (102)
T ss_dssp SHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CHHHHHHHHHHhCCCEECCcEEEEEeCCCCC
Confidence 9999999999999999999999999986543
No 35
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.5e-13 Score=107.22 Aligned_cols=84 Identities=21% Similarity=0.336 Sum_probs=72.8
Q ss_pred CCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeC
Q 040106 97 RPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFR 175 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~ 175 (324)
.+..+.+|+|.||-..-. +++|.+.|++||+|..|.|+.+. ++..+|++||+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t-------------------------~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 65 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTR-------------------------ETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFH 65 (103)
T ss_dssp CCSSSEEEEEESCCTTCC-------------------------HHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEES
T ss_pred CCCCCCEEEEeCCCCCCC-------------------------HHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEEC
Confidence 456788999999865321 26899999999999999998874 5678999999999
Q ss_pred cHHHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 040106 176 EEEQAAAALHALQGRFYSGRPIIVEFSPVT 205 (324)
Q Consensus 176 s~edA~~Ai~~LnGR~f~GR~I~vefs~v~ 205 (324)
+.++|.+|+..|||..|+|++|.|.++...
T Consensus 66 ~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 95 (103)
T 2cq0_A 66 RREDAARAIAGVSGFGYDHLILNVEWAKPS 95 (103)
T ss_dssp SHHHHHHHHHHTTTCEETTEECEEEESSCC
T ss_pred CHHHHHHHHHHcCCCeeCCcEEEEEECCCC
Confidence 999999999999999999999999998553
No 36
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.46 E-value=2.2e-13 Score=111.15 Aligned_cols=84 Identities=15% Similarity=0.259 Sum_probs=73.3
Q ss_pred CCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcH
Q 040106 98 PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREE 177 (324)
Q Consensus 98 P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~ 177 (324)
+..+.+|+|.||-.+-. ++||.+.|++||+|++|.|+.+.++..+|++||+|.+.
T Consensus 4 ~~~~~~l~V~nLp~~~t-------------------------~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~ 58 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETN-------------------------EKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENP 58 (116)
T ss_dssp TCSCCEEEEECCTTTCC-------------------------HHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSH
T ss_pred CCCCCEEEEeCCCCCCC-------------------------HHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCH
Confidence 45678999999865421 26899999999999999999887777899999999999
Q ss_pred HHHHHHHHHhcCCeeCCeEEEEEeecCCC
Q 040106 178 EQAAAALHALQGRFYSGRPIIVEFSPVTD 206 (324)
Q Consensus 178 edA~~Ai~~LnGR~f~GR~I~vefs~v~~ 206 (324)
++|.+|++.|||..|+|++|.|+++....
T Consensus 59 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 87 (116)
T 2fy1_A 59 ADAKNAAKDMNGKSLHGKAIKVEQAKKPS 87 (116)
T ss_dssp HHHHHHHHHCSSCBCSSSBCEEEECCCSS
T ss_pred HHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence 99999999999999999999999986543
No 37
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.46 E-value=5.1e-13 Score=107.41 Aligned_cols=83 Identities=19% Similarity=0.335 Sum_probs=72.1
Q ss_pred CCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeC
Q 040106 97 RPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFR 175 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~ 175 (324)
.+..+.+|+|.||-..- + ++||++.|++||.|..|.|+.+. ++..+|++||+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~--------------t-----------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 65 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEI--------------T-----------TEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFF 65 (115)
T ss_dssp CSTTCEEEEEESCCTTC--------------C-----------HHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred CCCCCcEEEEeCCCCCC--------------C-----------HHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEEC
Confidence 44577899999985532 1 26899999999999999999874 5678999999999
Q ss_pred cHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 176 EEEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 176 s~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
+.++|.+|++.|||..|+|++|.|.++..
T Consensus 66 ~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (115)
T 2dgo_A 66 NKWDAENAIQQMGGQWLGGRQIRTNWATR 94 (115)
T ss_dssp SHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred CHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 99999999999999999999999999854
No 38
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=3.8e-13 Score=106.49 Aligned_cols=86 Identities=21% Similarity=0.378 Sum_probs=73.2
Q ss_pred CCCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC--CCCceeEEEEE
Q 040106 96 NRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL--ADHMIGNVYVQ 173 (324)
Q Consensus 96 ~~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~--~~~~~G~vyV~ 173 (324)
.....+.+|+|.||-..-. +++|++.|++||+|..|.|+.+. ++..+|++||+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t-------------------------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~ 64 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQAN-------------------------QREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVD 64 (107)
T ss_dssp CCSSCCCCEEEESCCTTCC-------------------------HHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEE
T ss_pred ccCCCCCEEEEeCCCCcCC-------------------------HHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEE
Confidence 3445788999999865321 26899999999999999998873 56789999999
Q ss_pred eCcHHHHHHHHHHh-cCCeeCCeEEEEEeecCCC
Q 040106 174 FREEEQAAAALHAL-QGRFYSGRPIIVEFSPVTD 206 (324)
Q Consensus 174 F~s~edA~~Ai~~L-nGR~f~GR~I~vefs~v~~ 206 (324)
|.+.++|.+|+..| ||..|.|++|.|.++....
T Consensus 65 f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~ 98 (107)
T 2cph_A 65 FITKQDAKKAFNALCHSTHLYGRRLVLEWADSEV 98 (107)
T ss_dssp ESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCC
T ss_pred ECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCC
Confidence 99999999999999 9999999999999986543
No 39
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2.4e-13 Score=106.53 Aligned_cols=93 Identities=14% Similarity=0.225 Sum_probs=76.7
Q ss_pred ccccCCCcCCCCCCCCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC
Q 040106 83 GACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL 162 (324)
Q Consensus 83 GACRhGd~CSr~H~~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~ 162 (324)
|.|..+......+..+..+.+|+|.||-..- + +++|.+.|++||.|. +.|+.+
T Consensus 1 Gs~~~~~~~~~~~~~~~~~~~l~V~nL~~~~--------------t-----------~~~l~~~F~~~G~v~-~~~~~~- 53 (97)
T 2e5j_A 1 GSSGSSGPGSPPGEGAPLAADVYVGNLPRDA--------------R-----------VSDLKRALRELGSVP-LRLTWQ- 53 (97)
T ss_dssp CCCCCCCCCCCCCSSSCCCCEEEEECCCTTC--------------C-----------HHHHHHHHHHTTCCC-SEEEEE-
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEeCCCCcC--------------c-----------HHHHHHHHHhcCCEE-EEEEcC-
Confidence 4566666666677778889999999995532 1 268999999999997 565543
Q ss_pred CCCceeEEEEEeCcHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 163 ADHMIGNVYVQFREEEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 163 ~~~~~G~vyV~F~s~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
..+|++||+|.+.++|.+|++.|||..|+|++|.|+++..
T Consensus 54 --~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 54 --GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp --TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred --CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 4689999999999999999999999999999999999854
No 40
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.45 E-value=2.4e-13 Score=108.51 Aligned_cols=84 Identities=18% Similarity=0.257 Sum_probs=71.7
Q ss_pred CCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHHH
Q 040106 100 ISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQ 179 (324)
Q Consensus 100 ~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~ed 179 (324)
.+.+|+|.||-...+ +.++.++++|.+.|++||+|.+|.|+ ..++.++|++||+|.+.++
T Consensus 14 ~~~~l~V~nLp~~~~-------------------~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~ 73 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGP-------------------DRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAH 73 (105)
T ss_dssp CCSEEEEESCCCCCT-------------------TTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSH
T ss_pred CCCEEEEeCCCcchh-------------------hhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHH
Confidence 467899999876421 11344678999999999999999998 4456789999999999999
Q ss_pred HHHHHHHhcCCeeCCe-EEEEEeec
Q 040106 180 AAAALHALQGRFYSGR-PIIVEFSP 203 (324)
Q Consensus 180 A~~Ai~~LnGR~f~GR-~I~vefs~ 203 (324)
|.+|+..|||..|+|+ +|.|.++.
T Consensus 74 A~~Ai~~l~g~~~~g~~~l~V~~a~ 98 (105)
T 2nlw_A 74 AVDAVKNADGYKLDKQHTFRVNLFT 98 (105)
T ss_dssp HHHHHHHCSSEECSTTCEEEEECSC
T ss_pred HHHHHHHhCCcccCCCceEEEEEcc
Confidence 9999999999999999 99999974
No 41
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.45 E-value=4.5e-13 Score=107.94 Aligned_cols=82 Identities=15% Similarity=0.205 Sum_probs=71.4
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCcH
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFREE 177 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s~ 177 (324)
..+.+|+|.||-.+-. ++||++.|++||+|++|.|+.+. ++..+|++||+|.+.
T Consensus 23 ~~~~~l~V~nLp~~~t-------------------------~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 77 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFG-------------------------DQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNP 77 (115)
T ss_dssp STTCCEEEESCCSSCC-------------------------HHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSH
T ss_pred CCCcEEEEeCCCCCCC-------------------------HHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCH
Confidence 4567999999865321 26899999999999999998875 567899999999999
Q ss_pred HHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 040106 178 EQAAAALHALQGRFYSGRPIIVEFSPVT 205 (324)
Q Consensus 178 edA~~Ai~~LnGR~f~GR~I~vefs~v~ 205 (324)
++|.+|++.|||..|+|++|.|.|+...
T Consensus 78 ~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 105 (115)
T 2cpz_A 78 VSAQAAIQSMNGFQIGMKRLKVQLKRSK 105 (115)
T ss_dssp HHHHHHHHHHTTCEETTEECEEECCCCS
T ss_pred HHHHHHHHHcCCCEECCEEEEEEEcCCC
Confidence 9999999999999999999999998543
No 42
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=5e-13 Score=107.70 Aligned_cols=85 Identities=18% Similarity=0.313 Sum_probs=71.2
Q ss_pred CCCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHH---HHHhccCCeeEEEEeeCCC----CCcee
Q 040106 96 NRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIF---EELSKFGEIECLNVCDNLA----DHMIG 168 (324)
Q Consensus 96 ~~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~---eEf~kfG~I~~V~V~~n~~----~~~~G 168 (324)
.+...+.+|+|.||-.... + +||. +.|++||+|.+|.|+.+.. ..++|
T Consensus 10 ~r~~~~~~l~V~nLp~~~~--------------~-----------~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G 64 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLA--------------D-----------PEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSA 64 (111)
T ss_dssp CCCCCSSCEEEEEECTTTC--------------C-----------HHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCE
T ss_pred ccccCCCEEEEECCCCCCC--------------H-----------HHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCe
Confidence 3455678999999876432 2 5677 8999999999999987753 24679
Q ss_pred EEEEEeCcHHHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 040106 169 NVYVQFREEEQAAAALHALQGRFYSGRPIIVEFSPVT 205 (324)
Q Consensus 169 ~vyV~F~s~edA~~Ai~~LnGR~f~GR~I~vefs~v~ 205 (324)
++||+|.+.++|++|++.|||..|+|++|.|.++...
T Consensus 65 ~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k 101 (111)
T 2cpi_A 65 SAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTK 101 (111)
T ss_dssp EEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCC
T ss_pred EEEEEECcHHHHHHHHHHhCCCEECCEEEEEEecccc
Confidence 9999999999999999999999999999999998543
No 43
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.44 E-value=2.7e-13 Score=113.49 Aligned_cols=85 Identities=26% Similarity=0.399 Sum_probs=71.0
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHH
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEE 178 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~e 178 (324)
.++.||+|.||-... ++ +++.+.|.+.|++||+|.+|.|.. ++.++|++||+|.+.+
T Consensus 27 ~p~~~LfV~nL~~~~--------------~e-------~~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~ 83 (127)
T 2a3j_A 27 EPSQVVLITNINPEV--------------PK-------EKLQALLYALASSQGDILDIVVDL--SDDNSGKAYIVFATQE 83 (127)
T ss_dssp SCCSEEEEESCCTTS--------------CH-------HHHHHHHHHHHHHHSCEEEEEECC--CCSSCCCEEEEESSHH
T ss_pred CCCCEEEEeCCCCCC--------------CH-------HHHHHHHHHHhccCCCeEEEEecc--CCCcCCEEEEEECCHH
Confidence 357799999996532 23 344567889999999999998865 3567999999999999
Q ss_pred HHHHHHHHhcCCeeCCeEEEEEeecCCC
Q 040106 179 QAAAALHALQGRFYSGRPIIVEFSPVTD 206 (324)
Q Consensus 179 dA~~Ai~~LnGR~f~GR~I~vefs~v~~ 206 (324)
+|..|+..|||..|.|++|.|.|+....
T Consensus 84 ~A~~Ai~~lng~~l~gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 84 SAQAFVEAFQGYPFQGNPLVITFSETPQ 111 (127)
T ss_dssp HHHHHHHHSTTCCCTTSCCEEEECCCCC
T ss_pred HHHHHHHHHCCCEeCCCEEEEEEccCcc
Confidence 9999999999999999999999986543
No 44
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=3.8e-13 Score=105.80 Aligned_cols=84 Identities=20% Similarity=0.302 Sum_probs=72.2
Q ss_pred CCCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEe
Q 040106 96 NRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQF 174 (324)
Q Consensus 96 ~~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F 174 (324)
..+..+.+|+|.||-..- + +++|++.|++||+|..|.|+.+. ++..+|++||+|
T Consensus 7 ~~~~~~~~l~v~nLp~~~--------------t-----------~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f 61 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDT--------------N-----------EQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTF 61 (102)
T ss_dssp CCCCCCSEEEEESCCTTC--------------C-----------HHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEEC
T ss_pred CCCCCCCEEEEECCCCCC--------------C-----------HHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEE
Confidence 345678899999985532 1 26899999999999999998874 456899999999
Q ss_pred CcHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 175 REEEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 175 ~s~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
.+.++|.+|++.|||..|+|++|.|.++..
T Consensus 62 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 91 (102)
T 1x5s_A 62 ENIDDAKDAMMAMNGKSVDGRQIRVDQAGK 91 (102)
T ss_dssp SSHHHHHHHHHHHTTCCTTSCCCEEEEEEC
T ss_pred CCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 999999999999999999999999999854
No 45
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=3e-13 Score=106.73 Aligned_cols=83 Identities=19% Similarity=0.258 Sum_probs=72.0
Q ss_pred CCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeC
Q 040106 97 RPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFR 175 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~ 175 (324)
.+..+.+|+|.||-..-. ++||.+.|++||+|..|.|+.+. ++..+|++||+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t-------------------------~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 63 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTS-------------------------PDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFH 63 (103)
T ss_dssp CCSCCCEEEEESCCTTCC-------------------------HHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEES
T ss_pred CCCCCeEEEEeCCCCCCC-------------------------HHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEEC
Confidence 345678999999866421 26899999999999999998775 4678999999999
Q ss_pred cHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 176 EEEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 176 s~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
+.++|.+|+..|||..|+|++|.|.++..
T Consensus 64 ~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dnm_A 64 DRRDAQDAEAAMDGAELDGRELRVQVARY 92 (103)
T ss_dssp SSSHHHHHHHHHSSCCBTTBCCEEEECSS
T ss_pred CHHHHHHHHHHcCCCEECCcEEEEEECCc
Confidence 99999999999999999999999999854
No 46
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.44 E-value=4.1e-13 Score=109.67 Aligned_cols=84 Identities=23% Similarity=0.321 Sum_probs=72.8
Q ss_pred CCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCc
Q 040106 97 RPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRE 176 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s 176 (324)
.+..+.+|+|.||-..- + ++||++.|++||+|.+|.|+.+.++..+|++||+|.+
T Consensus 31 ~~~~~~~l~V~nlp~~~--------------t-----------~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~ 85 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGV--------------S-----------DADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFER 85 (124)
T ss_dssp CCSSCEEEEEESCCSSC--------------C-----------HHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESS
T ss_pred CCCCCCEEEEeCCCCCC--------------C-----------HHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECC
Confidence 34567799999985432 1 2689999999999999999988777789999999999
Q ss_pred HHHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 040106 177 EEQAAAALHALQGRFYSGRPIIVEFSPVT 205 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~GR~I~vefs~v~ 205 (324)
.++|.+|+..|||..|+|++|.|+++...
T Consensus 86 ~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 114 (124)
T 2kt5_A 86 RADALKAMKQYKGVPLDGRPMDIQLVASQ 114 (124)
T ss_dssp HHHHHHHHHHHTTEESSSCEEEEEEECCT
T ss_pred HHHHHHHHHHcCCCEECCcEEEEEEeCCC
Confidence 99999999999999999999999998653
No 47
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2.4e-13 Score=111.05 Aligned_cols=83 Identities=16% Similarity=0.260 Sum_probs=70.0
Q ss_pred CCCCCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEE
Q 040106 94 LHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQ 173 (324)
Q Consensus 94 ~H~~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~ 173 (324)
.|-.|..+.+|.|.||-..-. ++||++.|++||+|.+|.|+.+ +|++||+
T Consensus 9 ~~~~~~~~~~LfV~nLp~~vt-------------------------e~dL~~lF~~fG~V~~v~i~~~-----kGfaFVe 58 (105)
T 1sjq_A 9 HHGSGVPSRVIHIRKLPIDVT-------------------------EGEVISLGLPFGKVTNLLMLKG-----KNQAFIE 58 (105)
T ss_dssp ---CCCCCCEEEECSCCTTSC-------------------------HHHHHHHHHHHCCEEEEEEETT-----TTEEEEE
T ss_pred ccCCCCCCCEEEEeCCCCCCC-------------------------HHHHHHHHHhcCCEEEEEEEcC-----CCEEEEE
Confidence 456788999999999976422 2689999999999999999875 7999999
Q ss_pred eCcHHHHHHHHHHhc--CCeeCCeEEEEEeecCCC
Q 040106 174 FREEEQAAAALHALQ--GRFYSGRPIIVEFSPVTD 206 (324)
Q Consensus 174 F~s~edA~~Ai~~Ln--GR~f~GR~I~vefs~v~~ 206 (324)
|.+.++|.+|++.|+ |..++|++|.|.|+....
T Consensus 59 F~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 59 MNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 93 (105)
T ss_dssp ESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSS
T ss_pred ECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCC
Confidence 999999999999986 478999999999986543
No 48
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1e-12 Score=103.62 Aligned_cols=82 Identities=23% Similarity=0.294 Sum_probs=70.4
Q ss_pred CCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCc
Q 040106 97 RPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRE 176 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s 176 (324)
....+.+|+|.||-..- + +++|++.|++||+|++|.|+.+... .+|++||+|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~--------------t-----------~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~ 64 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDV--------------T-----------EVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYE 64 (103)
T ss_dssp CSCCCCEEEEESCCTTC--------------C-----------HHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESS
T ss_pred CCCCCCEEEEeCCCccC--------------C-----------HHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECC
Confidence 34567899999986532 1 2689999999999999999887543 68999999999
Q ss_pred HHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 177 EEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
.++|.+|+..|||..|.|++|.|.++..
T Consensus 65 ~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 65 HRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp HHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred HHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 9999999999999999999999999854
No 49
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.43 E-value=1.3e-12 Score=107.61 Aligned_cols=81 Identities=22% Similarity=0.326 Sum_probs=69.7
Q ss_pred CCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeC-CCCCceeEEEEEeC
Q 040106 97 RPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDN-LADHMIGNVYVQFR 175 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n-~~~~~~G~vyV~F~ 175 (324)
.+..+.+|+|.||-.... +++|++.|++||+|+.|.|+.+ .++..+|++||+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~-------------------------~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 113 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVD-------------------------DKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFE 113 (140)
T ss_dssp SCSSCCEEEEECCCTTCC-------------------------HHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCC-------------------------HHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEEC
Confidence 445788999999865321 2689999999999999999887 45678999999999
Q ss_pred cHHHHHHHHHHhcCCeeCCeEEEEEee
Q 040106 176 EEEQAAAALHALQGRFYSGRPIIVEFS 202 (324)
Q Consensus 176 s~edA~~Ai~~LnGR~f~GR~I~vefs 202 (324)
+.++|.+|++.|||..|+|++|.|.|+
T Consensus 114 ~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 114 LAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp CHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 999999999999999999999999875
No 50
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=5.2e-13 Score=104.27 Aligned_cols=82 Identities=26% Similarity=0.327 Sum_probs=70.0
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCC----CCceeEEEEEe
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLA----DHMIGNVYVQF 174 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~----~~~~G~vyV~F 174 (324)
..+.+|+|.||-..-. +++|++.|++||+|..|.|+.+.. +..+|++||+|
T Consensus 3 ~~~~~l~V~nLp~~~t-------------------------~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f 57 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTT-------------------------EETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEY 57 (98)
T ss_dssp CCCCCEEEESCCTTCC-------------------------HHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC-------------------------HHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEE
Confidence 4678999999865321 268999999999999999987642 26799999999
Q ss_pred CcHHHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 040106 175 REEEQAAAALHALQGRFYSGRPIIVEFSPVT 205 (324)
Q Consensus 175 ~s~edA~~Ai~~LnGR~f~GR~I~vefs~v~ 205 (324)
.+.++|.+|+..|||..++|++|.|.++...
T Consensus 58 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 88 (98)
T 2cpf_A 58 KKPEQAQKALKQLQGHTVDGHKLEVRISERA 88 (98)
T ss_dssp SSHHHHHHHHHHSTTCEETTEECEEECSSCS
T ss_pred CCHHHHHHHHHHhCCCeeCCeEEEEEEccCC
Confidence 9999999999999999999999999998543
No 51
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.43 E-value=1.7e-13 Score=109.04 Aligned_cols=79 Identities=22% Similarity=0.335 Sum_probs=68.0
Q ss_pred CCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCC--eeEEEEeeCC-CCCceeEEEEEeCc
Q 040106 100 ISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGE--IECLNVCDNL-ADHMIGNVYVQFRE 176 (324)
Q Consensus 100 ~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~--I~~V~V~~n~-~~~~~G~vyV~F~s 176 (324)
.-.||+|+||-..-. +++|.+.|++||. |.+|.|+.+. ++.++||+||+|.+
T Consensus 8 ~m~tlfV~nL~~~~t-------------------------ee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~ 62 (95)
T 2lkz_A 8 HMDTIILRNIAPHTV-------------------------VDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSS 62 (95)
T ss_dssp CCCEEEEESCCTTCC-------------------------HHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSS
T ss_pred ccCEEEEeCCCCcCC-------------------------HHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECC
Confidence 456999999966422 2789999999995 6799998875 56789999999999
Q ss_pred HHHHHHHHHHhcCC----eeCCeEEEEEeec
Q 040106 177 EEQAAAALHALQGR----FYSGRPIIVEFSP 203 (324)
Q Consensus 177 ~edA~~Ai~~LnGR----~f~GR~I~vefs~ 203 (324)
.++|.+|++.|||. .++||+|.|+|+.
T Consensus 63 ~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Ak 93 (95)
T 2lkz_A 63 AMDASQLLQILQSLHPPLKIDGKTIGVDFAK 93 (95)
T ss_dssp SHHHHHHHHHHHSSSSCEEETTEEEEEEECC
T ss_pred HHHHHHHHHHhcCCCCCceECCEEEEEEEcc
Confidence 99999999999997 5999999999975
No 52
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.43 E-value=5.4e-13 Score=108.08 Aligned_cols=77 Identities=22% Similarity=0.338 Sum_probs=67.1
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHH
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEE 178 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~e 178 (324)
.+|+||.|+||-.... ++||.+.|++||+|.+|.|+.. +|++||+|.+.+
T Consensus 19 ~ps~~l~V~NLp~~~t-------------------------e~~L~~lF~~fG~V~~v~i~~~-----kg~AFVef~~~~ 68 (100)
T 3r27_A 19 PASPVVHIRGLIDGVV-------------------------EADLVEALQEFGPISYVVVMPK-----KRQALVEFEDVL 68 (100)
T ss_dssp CCCSEEEEESCCTTCC-------------------------HHHHHHHHGGGSCEEEEEEETT-----TTEEEEEESSHH
T ss_pred CCCcEEEEeCCCCCCC-------------------------HHHHHHHHhccCCEEEEEEEcC-----CCEEEEEECCHH
Confidence 4789999999976422 2689999999999999999853 799999999999
Q ss_pred HHHHHHHHhcCCe--eCCeEEEEEeecCC
Q 040106 179 QAAAALHALQGRF--YSGRPIIVEFSPVT 205 (324)
Q Consensus 179 dA~~Ai~~LnGR~--f~GR~I~vefs~v~ 205 (324)
+|.+|++.|||.. +.|++|.|+|+...
T Consensus 69 ~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 69 GACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp HHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred HHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 9999999999975 88999999998653
No 53
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.43 E-value=5.8e-13 Score=102.66 Aligned_cols=80 Identities=18% Similarity=0.201 Sum_probs=69.7
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHH
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEE 178 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~e 178 (324)
..+.+|+|.||-.+-. .+||++.|++||+|..|.|+.+ ++..+|++||+|.+.+
T Consensus 6 ~~~~~l~V~nlp~~~t-------------------------~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~ 59 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFT-------------------------WKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPE 59 (92)
T ss_dssp SSCCEEEECSCCTTCC-------------------------HHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHH
T ss_pred CCCcEEEEeCCCCCCC-------------------------HHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHH
Confidence 4678999999865321 2689999999999999999874 5668999999999999
Q ss_pred HHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 179 QAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 179 dA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
+|.+|+..|||..++|++|.|.++..
T Consensus 60 ~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 60 VAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp HHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred HHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 99999999999999999999999854
No 54
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=5.5e-13 Score=105.56 Aligned_cols=80 Identities=23% Similarity=0.404 Sum_probs=69.6
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCcH
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFREE 177 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s~ 177 (324)
..+.+|+|.||-..-. .++|++.|++||+|.+|.|+.+. ++..+|++||+|.+.
T Consensus 21 ~~~~~l~V~nlp~~~t-------------------------~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 75 (106)
T 1p27_B 21 VEGWILFVTGVHEEAT-------------------------EEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETY 75 (106)
T ss_dssp TTBEEEEEECCCTTCC-------------------------HHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCH
T ss_pred CCCCEEEEeCCCCCCC-------------------------HHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCH
Confidence 3567899999866422 26899999999999999998874 467899999999999
Q ss_pred HHHHHHHHHhcCCeeCCeEEEEEeec
Q 040106 178 EQAAAALHALQGRFYSGRPIIVEFSP 203 (324)
Q Consensus 178 edA~~Ai~~LnGR~f~GR~I~vefs~ 203 (324)
++|.+|+..|||..++|++|.|.++.
T Consensus 76 ~~a~~A~~~l~g~~~~g~~l~V~~a~ 101 (106)
T 1p27_B 76 KEAQAAMEGLNGQDLMGQPISVDWCF 101 (106)
T ss_dssp HHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred HHHHHHHHHhcCCEECCcEEEEEeec
Confidence 99999999999999999999999974
No 55
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.42 E-value=2.4e-12 Score=107.02 Aligned_cols=144 Identities=17% Similarity=0.266 Sum_probs=99.2
Q ss_pred hhhhhccCcceeEeeccCCCCCCCCCCCchhhhhhccccchHHHHHHHHhCCCCCC--cccccccccccccCCCcCCCCC
Q 040106 18 KRFLREGKREEVCVWIDKLSEIPFPSQDKDSAVKFAGRGLAMAEHLASIFGTEKDR--VNCPFYFKIGACRHGDRCSRLH 95 (324)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~ma~~l~~~~gte~d~--vnC~Fy~K~GACRhGd~CSr~H 95 (324)
.-|-.-|.-.++.+..++.. .+.-.|+....+--.+..+|..+.|+.... +.+.+... ...
T Consensus 19 ~~f~~~G~i~~v~i~~~~~~------~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~-----------~~~ 81 (166)
T 3md3_A 19 QYFQVGGPIANIKIMIDKNN------KNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ-----------SQQ 81 (166)
T ss_dssp HHHGGGSCEEEEEEECCCC-------CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC-----------CCC
T ss_pred HHHHhcCCeEEEEEEECCCC------CCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC-----------CCC
Confidence 34555566666666555432 233334333344445556676777776653 22222111 111
Q ss_pred CCCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeC-CCCCceeEEEEEe
Q 040106 96 NRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDN-LADHMIGNVYVQF 174 (324)
Q Consensus 96 ~~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n-~~~~~~G~vyV~F 174 (324)
..+..+.+|+|.||-... ++ ++|.+.|++||.|..+.|..+ .++.++|++||+|
T Consensus 82 ~~~~~~~~l~v~nl~~~~--------------t~-----------~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f 136 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNV--------------DD-----------ETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSF 136 (166)
T ss_dssp CCCTTCEEEEEESCCTTC--------------CH-----------HHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEE
T ss_pred CCCCCCceEEECCCCCCC--------------CH-----------HHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEe
Confidence 334567789999985532 12 689999999999999999877 4567899999999
Q ss_pred CcHHHHHHHHHHhcCCeeCCeEEEEEeec
Q 040106 175 REEEQAAAALHALQGRFYSGRPIIVEFSP 203 (324)
Q Consensus 175 ~s~edA~~Ai~~LnGR~f~GR~I~vefs~ 203 (324)
.+.++|.+|+..|||..++|++|.|.|+.
T Consensus 137 ~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 137 TSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp SCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 99999999999999999999999999974
No 56
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=3.9e-13 Score=106.07 Aligned_cols=82 Identities=17% Similarity=0.219 Sum_probs=72.2
Q ss_pred CCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhc-cCCeeEEEEeeCCCCCceeEEEEEeCc
Q 040106 98 PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSK-FGEIECLNVCDNLADHMIGNVYVQFRE 176 (324)
Q Consensus 98 P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~k-fG~I~~V~V~~n~~~~~~G~vyV~F~s 176 (324)
+..+.+|+|.||-.+-. +++|.+.|++ ||+|.+|.|+.+.++..+|++||+|.+
T Consensus 6 ~~~~~~l~V~nLp~~~t-------------------------~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~ 60 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVD-------------------------DGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTD 60 (104)
T ss_dssp SSCCCCEEEECCCTTCC-------------------------HHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESC
T ss_pred CCCCcEEEEeCCCCCCC-------------------------HHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECC
Confidence 45678999999866422 2689999999 999999999988777799999999999
Q ss_pred HHHHHHHHHHhcCCe-eCCeEEEEEeecC
Q 040106 177 EEQAAAALHALQGRF-YSGRPIIVEFSPV 204 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~-f~GR~I~vefs~v 204 (324)
.++|.+|++.|||.. ++|++|.|.++..
T Consensus 61 ~~~a~~A~~~l~g~~~~~g~~l~v~~a~~ 89 (104)
T 2dhg_A 61 ELEQKRALTECQGAVGLGSKPVRLSVAIP 89 (104)
T ss_dssp HHHHHHHHHHTTTCCSSSSSCCCCCBCCC
T ss_pred HHHHHHHHHHccCCcccCCEeEEEEEccC
Confidence 999999999999999 9999999999854
No 57
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=9.9e-13 Score=102.84 Aligned_cols=78 Identities=18% Similarity=0.320 Sum_probs=68.2
Q ss_pred CCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCc
Q 040106 97 RPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRE 176 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s 176 (324)
.+.++.+|+|.||-.+-. + +||.+.|++||+|++|.|..+ +|++||+|.+
T Consensus 13 ~~~~~~~l~V~nlp~~~t--------------~-----------~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~ 62 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTS--------------L-----------AALAREFDRFGSIRTIDHVKG-----DSFAYIQYES 62 (97)
T ss_dssp CCCCCSCEEEECCCSSCC--------------H-----------HHHHHHHHTTSCEEEEEECSS-----SCCEEEEESS
T ss_pred CCCCCCEEEEeCCCCCCC--------------H-----------HHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECC
Confidence 456788999999866421 2 689999999999999999865 7899999999
Q ss_pred HHHHHHHHHHhcCCeeC--CeEEEEEeecC
Q 040106 177 EEQAAAALHALQGRFYS--GRPIIVEFSPV 204 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~--GR~I~vefs~v 204 (324)
.++|++|++.|||..++ |++|.|+|+..
T Consensus 63 ~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 63 LDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp HHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred HHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 99999999999999999 99999999854
No 58
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=8.8e-13 Score=105.00 Aligned_cols=84 Identities=25% Similarity=0.372 Sum_probs=72.4
Q ss_pred CCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeC
Q 040106 97 RPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFR 175 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~ 175 (324)
.+..+.+|+|.||-.+-. +++|.+.|++||+|..|.|+.+. ++..+|++||+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t-------------------------~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~ 65 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSE-------------------------EEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFM 65 (111)
T ss_dssp CCCCCCCEEEESCCTTCC-------------------------HHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEES
T ss_pred cCCCCCEEEEECCCCCCC-------------------------HHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEEC
Confidence 445788999999866422 26899999999999999998774 4568999999999
Q ss_pred cHHHHHHHHHHhc------CCeeCCeEEEEEeecCC
Q 040106 176 EEEQAAAALHALQ------GRFYSGRPIIVEFSPVT 205 (324)
Q Consensus 176 s~edA~~Ai~~Ln------GR~f~GR~I~vefs~v~ 205 (324)
+.++|.+|+..|| |..++|++|.|.++...
T Consensus 66 ~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~ 101 (111)
T 1x4h_A 66 TQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTR 101 (111)
T ss_dssp SHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCC
T ss_pred CHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCC
Confidence 9999999999999 99999999999998543
No 59
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.41 E-value=9.2e-13 Score=109.26 Aligned_cols=86 Identities=17% Similarity=0.298 Sum_probs=73.1
Q ss_pred CCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCc
Q 040106 98 PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFRE 176 (324)
Q Consensus 98 P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s 176 (324)
+..+.+|+|.||-.+- + ++||++.|++||+|++|.|+.+. ++..+|++||+|.+
T Consensus 39 ~~~~~~l~V~nLp~~~--------------~-----------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 93 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTV--------------D-----------EVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQS 93 (139)
T ss_dssp TTTTSEEEEESCSTTC--------------C-----------HHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESS
T ss_pred CCCCCEEEEeCCCCCC--------------C-----------HHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECC
Confidence 3567899999986532 1 26899999999999999998774 46689999999999
Q ss_pred HHHHHHHHHHhcCCeeCCeEEEEEeecCCCch
Q 040106 177 EEQAAAALHALQGRFYSGRPIIVEFSPVTDFR 208 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~GR~I~vefs~v~~f~ 208 (324)
.++|.+|++.|||..++|+.|.|.++....-+
T Consensus 94 ~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 125 (139)
T 1u6f_A 94 GSSAQQAIAGLNGFNILNKRLKVALAASGHQR 125 (139)
T ss_dssp HHHHHHHHHHTTTEECSSCEEEEEESSCCCCC
T ss_pred HHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 99999999999999999999999998765443
No 60
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.41 E-value=7e-13 Score=106.79 Aligned_cols=82 Identities=21% Similarity=0.271 Sum_probs=70.3
Q ss_pred CCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCc
Q 040106 98 PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFRE 176 (324)
Q Consensus 98 P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s 176 (324)
+..+.+|+|.||-..- + +++|++.|++||+|..|.|+.+. ++..+|++||+|.+
T Consensus 23 ~~~~~~l~V~nLp~~~--------------t-----------e~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~ 77 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNI--------------T-----------EDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD 77 (108)
T ss_dssp CSSCEEEEEECCCSSC--------------C-----------HHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESC
T ss_pred CCCCCEEEEeCCCCCC--------------C-----------HHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECC
Confidence 3466789999985532 1 26899999999999999998774 56789999999999
Q ss_pred HHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 177 EEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
.++|.+|++.|||..|+|++|.|.++..
T Consensus 78 ~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 105 (108)
T 2jrs_A 78 SECAKKALEQLNGFELAGRPMKVGHVTE 105 (108)
T ss_dssp HHHHHHHHHHHTTCCSSSSCCEEECSCS
T ss_pred HHHHHHHHHHcCCCEECCEEEEEEEccc
Confidence 9999999999999999999999999754
No 61
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.41 E-value=8.5e-13 Score=105.31 Aligned_cols=81 Identities=23% Similarity=0.349 Sum_probs=70.1
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCcH
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFREE 177 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s~ 177 (324)
..+.+|+|.||-..-. .++|.+.|++||+|.+|.|+.+. ++..+|++||+|.+.
T Consensus 24 ~~~~~l~V~nlp~~~t-------------------------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 78 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQ-------------------------EDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETH 78 (110)
T ss_dssp TTBEEEEEESCCTTCC-------------------------HHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSH
T ss_pred CCCCEEEEeCCCCCCC-------------------------HHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCH
Confidence 4567899999865321 26899999999999999998774 567899999999999
Q ss_pred HHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 178 EQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 178 edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
++|.+|+..|||..++|++|.|.++..
T Consensus 79 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 105 (110)
T 1oo0_B 79 KQALAAKEALNGAEIMGQTIQVDWCFV 105 (110)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred HHHHHHHHHcCCCEECCcEEEEEEccc
Confidence 999999999999999999999999743
No 62
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=1.1e-12 Score=102.75 Aligned_cols=83 Identities=13% Similarity=0.200 Sum_probs=70.9
Q ss_pred CCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeC
Q 040106 97 RPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFR 175 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~ 175 (324)
.+..+.+|+|.||-..-. + +||.+.|++||+|.+|.|+.+. ++..+|++||+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t--------------~-----------~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 60 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCG--------------E-----------TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFE 60 (99)
T ss_dssp CCSSCCEEEEESCCSSCC--------------H-----------HHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEES
T ss_pred CCCCCCEEEEeCCCCCCC--------------H-----------HHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEEC
Confidence 345778999999865321 2 6899999999999999998874 4668999999999
Q ss_pred cHHHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 040106 176 EEEQAAAALHALQGRFYSGRPIIVEFSPVT 205 (324)
Q Consensus 176 s~edA~~Ai~~LnGR~f~GR~I~vefs~v~ 205 (324)
+.++|.+|++ |||..++|++|.|.++...
T Consensus 61 ~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~ 89 (99)
T 2dgs_A 61 DEQSVDQAVN-MHFHDIMGKKVEVKRAEPR 89 (99)
T ss_dssp SHHHHHHHHH-HCCCBSSSCBCEEEECCCC
T ss_pred CHHHHHHHHH-hCCCEECCeEEEEEECCCC
Confidence 9999999998 9999999999999998543
No 63
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=6.4e-13 Score=106.90 Aligned_cols=84 Identities=24% Similarity=0.260 Sum_probs=71.2
Q ss_pred CCCCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEe
Q 040106 95 HNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQF 174 (324)
Q Consensus 95 H~~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F 174 (324)
...+..+.+|+|.||-.+-. +++|++.|++||+|.+|.|+.+.. ..+|++||+|
T Consensus 23 ~~~~~~~~~l~V~nLp~~~t-------------------------e~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f 76 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFR-------------------------DPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTF 76 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCC-------------------------HHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEEC
T ss_pred ccCCCCCCEEEEECCCCcCC-------------------------HHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEE
Confidence 33445678999999855321 268999999999999999988753 4799999999
Q ss_pred CcHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 175 REEEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 175 ~s~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
.+.++|.+|+..|||..|+|++|.|.++..
T Consensus 77 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 77 ENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp CCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 999999999999999999999999999754
No 64
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.41 E-value=5.4e-13 Score=106.23 Aligned_cols=77 Identities=19% Similarity=0.174 Sum_probs=67.1
Q ss_pred CCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHHH
Q 040106 100 ISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQ 179 (324)
Q Consensus 100 ~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~ed 179 (324)
.|.-|+|.||-...+ + ++|++.|.+||+|.+++|.. ++||+||+|.+.++
T Consensus 6 ~~~wL~VgNL~~~~t--------------e-----------~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~e 55 (89)
T 2wbr_A 6 GSSWLLLKNLTAQID--------------G-----------PTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREE 55 (89)
T ss_dssp CCCEEEEECCCTTCC--------------C-----------HHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHH
T ss_pred ccceEEEeCCCccCC--------------H-----------HHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHH
Confidence 567788898866432 1 78999999999999999965 48999999999999
Q ss_pred HHHHHHHhcCCeeCCeEEEEEeecCCC
Q 040106 180 AAAALHALQGRFYSGRPIIVEFSPVTD 206 (324)
Q Consensus 180 A~~Ai~~LnGR~f~GR~I~vefs~v~~ 206 (324)
|.+|+++|||..+.|++|.|.++...+
T Consensus 56 A~~Ai~~Ln~~~l~gr~I~V~~A~e~~ 82 (89)
T 2wbr_A 56 ANKAQMALNNCVLANTTIFAESPSENE 82 (89)
T ss_dssp HHHHHHHHTTEEETTEEEEEECCCHHH
T ss_pred HHHHHHHhcCCEECCcEEEEEECCHHH
Confidence 999999999999999999999985444
No 65
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.5e-12 Score=103.94 Aligned_cols=81 Identities=20% Similarity=0.260 Sum_probs=69.1
Q ss_pred CCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCc
Q 040106 97 RPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRE 176 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s 176 (324)
.+..+.+|+|.||-.+- + ++||++.|++||+|+.|.|..+ ...+|++||+|.+
T Consensus 18 ~~~~~~~l~V~nLp~~~--------------t-----------~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~ 70 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDI--------------R-----------TKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFED 70 (109)
T ss_dssp CCCCSSEEEEESCCTTC--------------C-----------HHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESC
T ss_pred CCCCCCEEEEeCCCCCC--------------C-----------HHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECC
Confidence 34567899999985532 1 2689999999999999999664 3478999999999
Q ss_pred HHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 177 EEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
.++|.+|++.|||..|+|++|.|+++..
T Consensus 71 ~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 71 PRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 9999999999999999999999999854
No 66
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.41 E-value=4.7e-13 Score=111.48 Aligned_cols=85 Identities=24% Similarity=0.291 Sum_probs=72.8
Q ss_pred CCCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEe
Q 040106 96 NRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQF 174 (324)
Q Consensus 96 ~~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F 174 (324)
..|..+.+|+|.||-..-. + +||++.|++||+|..|.|+.+. ++..+|++||+|
T Consensus 41 ~~~~~~~~l~V~nLp~~~t--------------e-----------~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F 95 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTT--------------E-----------RDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYF 95 (129)
T ss_dssp SCCCCSSCBCEETCTTSCC--------------H-----------HHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCC--------------H-----------HHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEE
Confidence 3466788999999865421 2 6899999999999999998774 456899999999
Q ss_pred CcHHHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 040106 175 REEEQAAAALHALQGRFYSGRPIIVEFSPVT 205 (324)
Q Consensus 175 ~s~edA~~Ai~~LnGR~f~GR~I~vefs~v~ 205 (324)
.+.++|.+|+..|||..|+|++|.|.|+...
T Consensus 96 ~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~ 126 (129)
T 2kxn_B 96 ENVDDAKEAKERANGMELDGRRIRVDFSITK 126 (129)
T ss_dssp SCHHHHHHHHHHHTTCCSSSSCCEESCCSSS
T ss_pred CCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 9999999999999999999999999998543
No 67
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.41 E-value=8.6e-13 Score=100.49 Aligned_cols=80 Identities=20% Similarity=0.346 Sum_probs=68.0
Q ss_pred CCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCC-CC-ceeEEEEEeCcH
Q 040106 100 ISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLA-DH-MIGNVYVQFREE 177 (324)
Q Consensus 100 ~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~-~~-~~G~vyV~F~s~ 177 (324)
.+.+|+|.||-.+- + ++||.+.|++||+|.+|.|+.+.. +. .+|++||+|.+.
T Consensus 3 ~~~~l~V~nlp~~~--------------t-----------~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~ 57 (88)
T 4a8x_A 3 KPTKVHIGRLTRNV--------------T-----------KDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENP 57 (88)
T ss_dssp CCCEEEEECCCTTC--------------C-----------HHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSH
T ss_pred CCCEEEEeCCCCCC--------------C-----------HHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecH
Confidence 46789999985432 1 268999999999999999987653 23 799999999999
Q ss_pred HHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 178 EQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 178 edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
++|.+|+..|||..++|++|.|+++..
T Consensus 58 ~~a~~A~~~l~g~~~~g~~l~v~~a~~ 84 (88)
T 4a8x_A 58 DEAEKALKHMDGGQIDGQEITATAVLA 84 (88)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEEECC
T ss_pred HHHHHHHHHcCCCeECCeEEEEEECCC
Confidence 999999999999999999999999854
No 68
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1e-12 Score=103.07 Aligned_cols=82 Identities=15% Similarity=0.222 Sum_probs=67.6
Q ss_pred CCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHHH
Q 040106 100 ISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQ 179 (324)
Q Consensus 100 ~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~ed 179 (324)
...+|+|.||-..- +++ ++.+.|.+.|++||+|.+|.|+.+... +|++||+|.+.++
T Consensus 8 ~~~~l~V~nL~~~~--------------~~~-------~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~ 64 (96)
T 2dgx_A 8 NGADVQVSNIDYRL--------------SRK-------ELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQD 64 (96)
T ss_dssp SCEEEEEESCCTTS--------------CHH-------HHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHH
T ss_pred CCCEEEEECCCCCC--------------CHH-------HHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHH
Confidence 45689999986542 232 222445599999999999999887654 8999999999999
Q ss_pred HHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 180 AAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 180 A~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
|.+|++.|||..++|++|.|.++..
T Consensus 65 A~~Ai~~l~g~~~~gr~l~V~~a~~ 89 (96)
T 2dgx_A 65 AIGAVNSLHRYKIGSKKILVSLATG 89 (96)
T ss_dssp HHHHHHHHTTEEETTEEEEEEECCC
T ss_pred HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 9999999999999999999999854
No 69
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.40 E-value=1.2e-12 Score=103.37 Aligned_cols=85 Identities=19% Similarity=0.237 Sum_probs=72.2
Q ss_pred CCCCCCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEE
Q 040106 93 RLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVY 171 (324)
Q Consensus 93 r~H~~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vy 171 (324)
.....+..+.+|+|.||-..- + ++||.+.|++|| |.+|.|+.+. ++..+|++|
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~--------------t-----------~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~af 60 (103)
T 2dng_A 7 GKELPTEPPYTAYVGNLPFNT--------------V-----------QGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCY 60 (103)
T ss_dssp CCCCCSSSCEEEEEESCCTTC--------------C-----------HHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEE
T ss_pred CCCCCCCCCeEEEEeCCCCCC--------------C-----------HHHHHHHHHhCC-ceEEEEeecCCCCccceEEE
Confidence 345556778899999996532 1 268999999997 9999998875 467899999
Q ss_pred EEeCcHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 172 VQFREEEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 172 V~F~s~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
|+|.+.++|.+|+ .|||..|+|++|.|.++..
T Consensus 61 V~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dng_A 61 VEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEG 92 (103)
T ss_dssp EEESSHHHHHHHG-GGTTCEETTEECEEEECCC
T ss_pred EEECCHHHHHHHH-hhCCCeECCeEEEEEEecC
Confidence 9999999999999 8999999999999999854
No 70
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.40 E-value=6.2e-13 Score=108.56 Aligned_cols=80 Identities=23% Similarity=0.404 Sum_probs=69.5
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCcH
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFREE 177 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s~ 177 (324)
..+.+|+|.||-... + +++|.+.|++||+|.+|.|+.+. ++..+|++||+|.+.
T Consensus 20 ~~~~~l~V~nlp~~~--------------t-----------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 74 (126)
T 3ex7_B 20 VEGWILFVTGVHEEA--------------T-----------EEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETY 74 (126)
T ss_dssp SSSEEEEEESCCTTC--------------C-----------HHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSH
T ss_pred CCCCEEEEeCCCCCC--------------C-----------HHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCH
Confidence 356789999986532 1 26899999999999999998774 567899999999999
Q ss_pred HHHHHHHHHhcCCeeCCeEEEEEeec
Q 040106 178 EQAAAALHALQGRFYSGRPIIVEFSP 203 (324)
Q Consensus 178 edA~~Ai~~LnGR~f~GR~I~vefs~ 203 (324)
++|.+|++.|||..|+|++|.|+|+.
T Consensus 75 ~~a~~A~~~l~g~~~~g~~l~v~~a~ 100 (126)
T 3ex7_B 75 KEAQAAMEGLNGQDLMGQPISVDWCF 100 (126)
T ss_dssp HHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred HHHHHHHHHhCCCeeCCeEEEEEEec
Confidence 99999999999999999999999974
No 71
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=9.3e-13 Score=104.24 Aligned_cols=85 Identities=18% Similarity=0.194 Sum_probs=71.6
Q ss_pred CCCCCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCC--CCceeEEE
Q 040106 94 LHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLA--DHMIGNVY 171 (324)
Q Consensus 94 ~H~~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~--~~~~G~vy 171 (324)
....+..+.+|+|.||-..- + ++||.+.|++|| |.+|.|+.+.. +..+|++|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~--------------t-----------~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~af 61 (104)
T 1wi8_A 8 SRLPKSPPYTAFLGNLPYDV--------------T-----------EESIKEFFRGLN-ISAVRLPREPSNPERLKGFGY 61 (104)
T ss_dssp CCCCSSSCEEEEEESCCSSC--------------C-----------HHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEE
T ss_pred CCCCCCCCCEEEEeCCCCcC--------------C-----------HHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEE
Confidence 33444567899999985532 1 268999999999 99999988753 67899999
Q ss_pred EEeCcHHHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 040106 172 VQFREEEQAAAALHALQGRFYSGRPIIVEFSPVT 205 (324)
Q Consensus 172 V~F~s~edA~~Ai~~LnGR~f~GR~I~vefs~v~ 205 (324)
|+|.+.++|.+|+ .|||..|+|++|.|.++...
T Consensus 62 V~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 94 (104)
T 1wi8_A 62 AEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQA 94 (104)
T ss_dssp EEESSHHHHHHHH-GGGTCEETTEECEEEECCCC
T ss_pred EEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCC
Confidence 9999999999999 99999999999999998654
No 72
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.40 E-value=5e-13 Score=103.99 Aligned_cols=85 Identities=21% Similarity=0.426 Sum_probs=69.3
Q ss_pred CCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcH
Q 040106 98 PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREE 177 (324)
Q Consensus 98 P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~ 177 (324)
+.++.+|+|.||-.+- ++ +++.+.|.+.|++||+|.+|.|+.+ +..+|++||+|.+.
T Consensus 5 ~~~~~~l~V~nLp~~~--------------~~-------~~l~~~l~~~f~~~G~i~~v~i~~~--~~~~g~afV~f~~~ 61 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKI--------------KK-------DELKKSLHAIFSRFGQILDILVSRS--LKMRGQAFVIFKEV 61 (97)
T ss_dssp -CCCSEEEEESCCTTS--------------CH-------HHHHHHHHHHHGGGSCEEEEECCHH--HHHTTCEEEEESSH
T ss_pred CCCCCEEEEeCCCCCC--------------CH-------HHHHHHHHHHHHhCCCEEEEEEEcC--CCcCcEEEEEeCCH
Confidence 3567899999986532 23 2333566699999999999999742 34689999999999
Q ss_pred HHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 040106 178 EQAAAALHALQGRFYSGRPIIVEFSPVT 205 (324)
Q Consensus 178 edA~~Ai~~LnGR~f~GR~I~vefs~v~ 205 (324)
++|.+|+..|||..++|++|.|.|+...
T Consensus 62 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (97)
T 1nu4_A 62 SSATNALRSMQGFPFYDKPMRIQYAKTD 89 (97)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECSSC
T ss_pred HHHHHHHHHhCCCEECCcEEEEEEccCC
Confidence 9999999999999999999999998654
No 73
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.40 E-value=1.1e-12 Score=105.50 Aligned_cols=81 Identities=22% Similarity=0.379 Sum_probs=69.7
Q ss_pred CCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCc
Q 040106 97 RPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRE 176 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s 176 (324)
.|..+.+|+|.||-..- + .+||.+.|++||.|.+|.|+.+. ..+|++||+|.+
T Consensus 4 ~~~~~~~l~V~nlp~~~--------------t-----------~~~l~~~F~~~G~v~~v~i~~~~--~~~g~afV~f~~ 56 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKI--------------T-----------AEEMYDIFGKYGPIRQIRVGNTP--ETRGTAYVVYED 56 (115)
T ss_dssp CTTCCSEEEEESCCTTC--------------C-----------HHHHHHHHHTTSCEEEEEEECST--TTTTCEEEEESS
T ss_pred CCCCCCEEEEeCCCCCC--------------C-----------HHHHHHHHHhcCCeEEEEEeeCC--CCCcEEEEEECC
Confidence 46678899999985432 1 26899999999999999998753 358999999999
Q ss_pred HHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 177 EEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
.++|.+|+..|||..++|+.|.|.|+..
T Consensus 57 ~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 57 IFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp HHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 9999999999999999999999999853
No 74
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.1e-12 Score=105.16 Aligned_cols=82 Identities=12% Similarity=0.276 Sum_probs=70.9
Q ss_pred CCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCee--------EEEEeeC-CCCCcee
Q 040106 98 PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIE--------CLNVCDN-LADHMIG 168 (324)
Q Consensus 98 P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~--------~V~V~~n-~~~~~~G 168 (324)
...+.+|+|.||-..- + +++|++.|++||.|. .|.|+.+ .++..+|
T Consensus 12 ~~~~~~l~V~nLp~~~--------------t-----------~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g 66 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSV--------------T-----------LDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKG 66 (113)
T ss_dssp CCCCCEEEEECCCTTC--------------C-----------HHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCS
T ss_pred CCCCCEEEEcCCCCCC--------------C-----------HHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeee
Confidence 3467899999986532 1 268999999999999 6999887 4677899
Q ss_pred EEEEEeCcHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 169 NVYVQFREEEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 169 ~vyV~F~s~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
++||+|.+.++|.+|++.|||..|.|++|.|.++..
T Consensus 67 ~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (113)
T 2cpe_A 67 DATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARK 102 (113)
T ss_dssp EEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSC
T ss_pred EEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCC
Confidence 999999999999999999999999999999999754
No 75
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=9e-13 Score=103.09 Aligned_cols=83 Identities=17% Similarity=0.325 Sum_probs=71.5
Q ss_pred CCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCee-EEEEeeCC-CCCceeEEEEEeC
Q 040106 98 PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIE-CLNVCDNL-ADHMIGNVYVQFR 175 (324)
Q Consensus 98 P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~-~V~V~~n~-~~~~~G~vyV~F~ 175 (324)
+..+.+|+|.||-.+- + +++|++.|++||+|. +|.|+.+. ++..+|++||+|.
T Consensus 6 ~~~~~~l~V~nLp~~~--------------t-----------~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~ 60 (99)
T 2div_A 6 SGMAASLWMGDLEPYM--------------D-----------ENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFA 60 (99)
T ss_dssp CSSSSEEEECSCCTTC--------------C-----------HHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECS
T ss_pred CCCccEEEEeCCCCCC--------------C-----------HHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeC
Confidence 3568899999986532 1 268999999999999 99998875 5678999999999
Q ss_pred cHHHHHHHHHHhcCCeeCCeE----EEEEeecCC
Q 040106 176 EEEQAAAALHALQGRFYSGRP----IIVEFSPVT 205 (324)
Q Consensus 176 s~edA~~Ai~~LnGR~f~GR~----I~vefs~v~ 205 (324)
+.++|++|+..|||..++|+. |.|.|+...
T Consensus 61 ~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 61 DLATAEKCLHKINGKPLPGATPAKRFKLNYATYS 94 (99)
T ss_dssp CHHHHHHHHHTTTTSEESSCSSCEECCEEETTCC
T ss_pred CHHHHHHHHHHHcCCccCCCCcceeEEEeecCCC
Confidence 999999999999999999999 999997543
No 76
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=5.5e-13 Score=107.23 Aligned_cols=80 Identities=18% Similarity=0.307 Sum_probs=70.0
Q ss_pred CCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCc
Q 040106 97 RPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRE 176 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s 176 (324)
....+.||.|.||-.+.. +++|.+.|++||+|.+|.|+.+..+.++|++||+|.+
T Consensus 7 ~~~~~~~lfV~~Lp~~~t-------------------------e~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~ 61 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDAT-------------------------LDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDS 61 (103)
T ss_dssp SCSGGGCEEEECCCTTCC-------------------------HHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESS
T ss_pred ccCCCCEEEEECCCCCCC-------------------------HHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECC
Confidence 345678999999866422 2789999999999999999988667799999999999
Q ss_pred HHHHHHHHHHhcCCeeCCeEEEEEee
Q 040106 177 EEQAAAALHALQGRFYSGRPIIVEFS 202 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~GR~I~vefs 202 (324)
.++|.+|+. |||..|+|++|.|.+.
T Consensus 62 ~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 62 IESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp HHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred HHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 999999999 9999999999999975
No 77
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=3e-12 Score=98.77 Aligned_cols=83 Identities=20% Similarity=0.252 Sum_probs=71.8
Q ss_pred CCCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeC
Q 040106 96 NRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFR 175 (324)
Q Consensus 96 ~~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~ 175 (324)
..+....+|+|.||-.+.. ++||++.|++| .|.+|.|+.+.++..+|++||+|.
T Consensus 5 ~~~~~~~~l~v~nLp~~~t-------------------------~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~ 58 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVT-------------------------EKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFS 58 (91)
T ss_dssp CCCCCCCEEEEECCCSSCC-------------------------HHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECS
T ss_pred CCCCCccEEEEECCCCCCC-------------------------HHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEEC
Confidence 3456778999999865422 26899999999 999999998877779999999999
Q ss_pred cHHHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 040106 176 EEEQAAAALHALQGRFYSGRPIIVEFSPVT 205 (324)
Q Consensus 176 s~edA~~Ai~~LnGR~f~GR~I~vefs~v~ 205 (324)
+.++|.+|+. |||..++|++|.|.++...
T Consensus 59 ~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~ 87 (91)
T 2dgw_A 59 NEEEVKQALK-CNREYMGGRYIEVFREKSG 87 (91)
T ss_dssp SHHHHHHHHH-SCSEEETTEEEEEEEESSC
T ss_pred CHHHHHHHHH-hCCceeCCcEEEEEECCcC
Confidence 9999999999 9999999999999998643
No 78
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=6.1e-13 Score=104.74 Aligned_cols=83 Identities=18% Similarity=0.324 Sum_probs=71.1
Q ss_pred CCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCcHH
Q 040106 100 ISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFREEE 178 (324)
Q Consensus 100 ~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s~e 178 (324)
.+.+|+|.||-..-. .++|++.|++||+|..|.|+.+. ++..+|++||+|.+.+
T Consensus 7 ~~~~l~V~nlp~~~~-------------------------~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~ 61 (104)
T 1p1t_A 7 SLRSVFVGNIPYEAT-------------------------EEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQE 61 (104)
T ss_dssp HHSCEEEESCCTTSC-------------------------HHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHH
T ss_pred CccEEEEeCCCCcCC-------------------------HHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHH
Confidence 467899998865321 26899999999999999998774 5678999999999999
Q ss_pred HHHHHHHHhcCCeeCCeEEEEEeecCCCc
Q 040106 179 QAAAALHALQGRFYSGRPIIVEFSPVTDF 207 (324)
Q Consensus 179 dA~~Ai~~LnGR~f~GR~I~vefs~v~~f 207 (324)
+|.+|++.|||..|+|++|.|.++....-
T Consensus 62 ~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 90 (104)
T 1p1t_A 62 TALSAMRNLNGREFSGRALRVDNAASEKN 90 (104)
T ss_dssp HHHHHHHHSSSBSCSSSCBEEEETTCTTH
T ss_pred HHHHHHHHhCCCeeCCcEEEEEeCCCccc
Confidence 99999999999999999999999865443
No 79
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=7.2e-13 Score=109.21 Aligned_cols=92 Identities=15% Similarity=0.288 Sum_probs=75.3
Q ss_pred ccccCCCcCCCCCCCCCCCCeeEeccccCC-CCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeC
Q 040106 83 GACRHGDRCSRLHNRPTISPTLLLSNMYQR-PDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDN 161 (324)
Q Consensus 83 GACRhGd~CSr~H~~P~~S~tLlL~NMy~~-p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n 161 (324)
++--+|+.-.+....+.++.+|+|.||-.+ -. + +||.+.|++||+|.+|.|...
T Consensus 7 ~~~~~~~~~k~~~~~~~p~~~l~V~NLp~~~~t--------------e-----------~~L~~lF~~fG~V~~v~i~~~ 61 (112)
T 1x4f_A 7 GKKPEGKPDQKFDQKQELGRVIHLSNLPHSGYS--------------D-----------SAVLKLAEPYGKIKNYILMRM 61 (112)
T ss_dssp CCCSCCCCCCCCCCSSCCCCEEEEESCCCSSCC--------------S-----------HHHHTTTTTTSCCSEEEEETT
T ss_pred CccccCChhhhccccCCCCCEEEEeCCCCccCC--------------H-----------HHHHHHHHhcCCEEEEEEecC
Confidence 444455555555666778999999999774 32 1 689999999999999999753
Q ss_pred CCCCceeEEEEEeCcHHHHHHHHHHhcC--CeeCCeEEEEEeecC
Q 040106 162 LADHMIGNVYVQFREEEQAAAALHALQG--RFYSGRPIIVEFSPV 204 (324)
Q Consensus 162 ~~~~~~G~vyV~F~s~edA~~Ai~~LnG--R~f~GR~I~vefs~v 204 (324)
+|++||+|.+.++|.+|++.||| ..|+|++|.|+|+..
T Consensus 62 -----kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 62 -----KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp -----TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred -----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 79999999999999999999864 569999999999854
No 80
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.39 E-value=1.1e-12 Score=103.85 Aligned_cols=84 Identities=23% Similarity=0.277 Sum_probs=71.7
Q ss_pred CCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeC
Q 040106 97 RPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFR 175 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~ 175 (324)
.+..+.+|+|.||-.+-. ++||++.|++||+|.+|.|+.+. ++..+|++||+|.
T Consensus 9 ~~~~~~~l~V~nlp~~~t-------------------------~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~ 63 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLD-------------------------EKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYC 63 (106)
T ss_dssp CCTTCEEEEEESCCTTCC-------------------------HHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEES
T ss_pred CCCCCCEEEEeCCCCCCC-------------------------HHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEEC
Confidence 456778899999865321 26899999999999999998875 4668999999999
Q ss_pred cHHHHHHHHHHhcCCee---CCeEEEEEeecCC
Q 040106 176 EEEQAAAALHALQGRFY---SGRPIIVEFSPVT 205 (324)
Q Consensus 176 s~edA~~Ai~~LnGR~f---~GR~I~vefs~v~ 205 (324)
+.++|.+|++.|||..+ .|++|.|.++...
T Consensus 64 ~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~ 96 (106)
T 2dgp_A 64 ERESALKAQSALHEQKTLPGMNRPIQVKPADSE 96 (106)
T ss_dssp SHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCC
T ss_pred CHHHHHHHHHHhcCCcccCCCCceEEEEECCcc
Confidence 99999999999999988 8999999998543
No 81
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.39 E-value=1.1e-12 Score=100.22 Aligned_cols=63 Identities=22% Similarity=0.402 Sum_probs=58.3
Q ss_pred HHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCcHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 141 EDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFREEEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 141 eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
++|.+.|++||+|.+|.|+.+. ++..+|++||+|.+.++|.+|+ .|||..|+|++|.|.++..
T Consensus 21 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 21 EELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred HHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 6899999999999999998874 5678999999999999999999 9999999999999999754
No 82
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=5.6e-13 Score=107.87 Aligned_cols=78 Identities=17% Similarity=0.289 Sum_probs=67.5
Q ss_pred CCCCCCeeEeccccC-CCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeC
Q 040106 97 RPTISPTLLLSNMYQ-RPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFR 175 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~-~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~ 175 (324)
.+.++.+|.|.||-. .-. ++||.+.|++||+|.+|.|+.+ +|++||+|+
T Consensus 11 ~~~p~~~l~V~nLp~~~~t-------------------------e~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~ 60 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNL-------------------------RYQLLQLVEPFGVISNHLILNK-----INEAFIEMA 60 (102)
T ss_dssp CCCCCCEEEEESCCCSSSH-------------------------HHHHHTTTGGGSCEEEEEECSS-----SSCEEEEES
T ss_pred CCCCCCEEEEeCCCCCcCC-------------------------HHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEEC
Confidence 455789999999976 422 2789999999999999999865 689999999
Q ss_pred cHHHHHHHHHHhcCC--eeCCeEEEEEeecC
Q 040106 176 EEEQAAAALHALQGR--FYSGRPIIVEFSPV 204 (324)
Q Consensus 176 s~edA~~Ai~~LnGR--~f~GR~I~vefs~v 204 (324)
+.++|.+|++.|||. .|.|++|.|.|+..
T Consensus 61 ~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 61 TTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp SHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 999999999999974 59999999999863
No 83
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.39 E-value=2.7e-12 Score=108.74 Aligned_cols=83 Identities=22% Similarity=0.252 Sum_probs=71.8
Q ss_pred CCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeC
Q 040106 97 RPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFR 175 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~ 175 (324)
.+..+.+|+|.||-... + ++||.+.|++||+|+.|.|+.+. ++..+|++||+|.
T Consensus 35 ~~~~~~~l~V~nlp~~~--------------t-----------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 89 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYT--------------T-----------EEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYY 89 (156)
T ss_dssp TTTTCCEEEEESCCTTC--------------C-----------HHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred cCCCCCEEEEeCCCCCC--------------C-----------HHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEEC
Confidence 33567899999986532 1 26899999999999999998875 4668999999999
Q ss_pred cHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 176 EEEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 176 s~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
+.++|.+|+..|||..|+|++|.|+++..
T Consensus 90 ~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 118 (156)
T 1h2v_Z 90 SRADAENAMRYINGTRLDDRIIRTDWDAG 118 (156)
T ss_dssp SHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred CHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 99999999999999999999999999853
No 84
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=1.2e-12 Score=105.81 Aligned_cols=80 Identities=18% Similarity=0.299 Sum_probs=67.4
Q ss_pred CCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcH
Q 040106 98 PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREE 177 (324)
Q Consensus 98 P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~ 177 (324)
..+++||+|.||-..- + ++||.+.|++||+|.+|.|+.+ +|++||+|.+.
T Consensus 12 ~~p~~~l~V~nLp~~~--------------t-----------e~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~ 61 (104)
T 1wex_A 12 VSVSPVVHVRGLCESV--------------V-----------EADLVEALEKFGTICYVMMMPF-----KRQALVEFENI 61 (104)
T ss_dssp CCCCSEEEEESCCSSC--------------C-----------HHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSH
T ss_pred CCCCCEEEEeCCCCCC--------------C-----------HHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCH
Confidence 3478999999986532 1 2689999999999999999764 79999999999
Q ss_pred HHHHHHHHHhcCC--eeCCeEEEEEeecCCCc
Q 040106 178 EQAAAALHALQGR--FYSGRPIIVEFSPVTDF 207 (324)
Q Consensus 178 edA~~Ai~~LnGR--~f~GR~I~vefs~v~~f 207 (324)
++|.+|++.|||. .++|++|.|+|+.....
T Consensus 62 ~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~ 93 (104)
T 1wex_A 62 DSAKECVTFAADVPVYIAGQQAFFNYSTSKRI 93 (104)
T ss_dssp HHHHHHHHHHHHSCCBSSSSBCEEEECSSSSC
T ss_pred HHHHHHHHHhccCCceECCEEEEEEEccCccc
Confidence 9999999999765 59999999999865443
No 85
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1.5e-12 Score=98.90 Aligned_cols=77 Identities=19% Similarity=0.307 Sum_probs=67.0
Q ss_pred CCCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeC
Q 040106 96 NRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFR 175 (324)
Q Consensus 96 ~~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~ 175 (324)
..+..+.+|+|.||-.+-. .++|++.|++||+|..|.|+.+ +|++||+|.
T Consensus 7 ~~~~~~~~l~V~~l~~~~t-------------------------~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~ 56 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTIT-------------------------ETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFA 56 (85)
T ss_dssp CSCSSCCCEEEECCTTTSC-------------------------HHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEES
T ss_pred CCCCCccEEEEcCCCCCCC-------------------------HHHHHHHHHhCCCEeEEEEECC-----CCEEEEEEC
Confidence 3445678999999876422 2689999999999999999874 799999999
Q ss_pred cHHHHHHHHHHh-cCCeeCCeEEEEEee
Q 040106 176 EEEQAAAALHAL-QGRFYSGRPIIVEFS 202 (324)
Q Consensus 176 s~edA~~Ai~~L-nGR~f~GR~I~vefs 202 (324)
+.++|.+|+..| ||..++|++|.|+|+
T Consensus 57 ~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 57 TRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp SHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 999999999999 999999999999986
No 86
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.38 E-value=5.1e-13 Score=103.57 Aligned_cols=80 Identities=16% Similarity=0.154 Sum_probs=66.9
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeC-CCCCceeEEEEEeCcH
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDN-LADHMIGNVYVQFREE 177 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n-~~~~~~G~vyV~F~s~ 177 (324)
..+.+|+|.||-..- + ++||++.|++||.|..+.|+.+ .++..+|++||+|.+.
T Consensus 13 ~~~~~l~V~nlp~~~--------------t-----------~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~ 67 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTV--------------S-----------IDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR 67 (95)
T ss_dssp --CEEEEEECCCTTC--------------C-----------HHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSH
T ss_pred CCCCEEEEeCCCCCC--------------C-----------HHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCH
Confidence 346789999985532 1 2689999999999998877654 4567899999999999
Q ss_pred HHHHHHHHHhcCCeeCCeEEEEEeec
Q 040106 178 EQAAAALHALQGRFYSGRPIIVEFSP 203 (324)
Q Consensus 178 edA~~Ai~~LnGR~f~GR~I~vefs~ 203 (324)
++|.+|++.|||..|+|++|.|+++.
T Consensus 68 ~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 68 DEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp HHHHHHHHHHTTCEETTEECEEECCC
T ss_pred HHHHHHHHHhCCCeECCcEEEEEecc
Confidence 99999999999999999999999974
No 87
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.38 E-value=8.4e-13 Score=106.58 Aligned_cols=80 Identities=16% Similarity=0.188 Sum_probs=69.2
Q ss_pred CCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCc
Q 040106 98 PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFRE 176 (324)
Q Consensus 98 P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s 176 (324)
+..+.+|+|.||-.+- + ++||++.|++||+|.+|.|+.+. ++..+|++||+|.+
T Consensus 37 ~~~~~~l~V~nlp~~~--------------t-----------~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~ 91 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEF--------------T-----------DTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDN 91 (118)
T ss_dssp CCCSEEEEEECSCTTC--------------C-----------HHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEES
T ss_pred CCCCCEEEEeCCCCCC--------------C-----------HHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECC
Confidence 3456789999886532 1 26899999999999999998774 56789999999999
Q ss_pred HHHHHHHHHHhcCCeeCCeEEEEEee
Q 040106 177 EEQAAAALHALQGRFYSGRPIIVEFS 202 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~GR~I~vefs 202 (324)
.++|.+|++.|||..|+|++|.|+|+
T Consensus 92 ~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 92 PDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp SHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred HHHHHHHHHHcCCCEECCEEEEEEec
Confidence 99999999999999999999999986
No 88
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=8.9e-13 Score=106.67 Aligned_cols=79 Identities=22% Similarity=0.271 Sum_probs=68.1
Q ss_pred CCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHHH
Q 040106 100 ISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQ 179 (324)
Q Consensus 100 ~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~ed 179 (324)
.+.+|+|.||-..-. ++||++.|++||+|..|.|+. .+|++||+|.+.++
T Consensus 9 ~~~~l~V~nLp~~~t-------------------------e~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~ 58 (111)
T 1whx_A 9 SKTVILAKNLPAGTL-------------------------AAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLE 58 (111)
T ss_dssp EEEEEEEESCCTTCC-------------------------HHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHH
T ss_pred CCCEEEEeCCCCCCC-------------------------HHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHH
Confidence 356899999865321 278999999999999999975 47999999999999
Q ss_pred HHHHHHHhcCCeeCCeEEEEEeecCCCch
Q 040106 180 AAAALHALQGRFYSGRPIIVEFSPVTDFR 208 (324)
Q Consensus 180 A~~Ai~~LnGR~f~GR~I~vefs~v~~f~ 208 (324)
|.+|++.|||..|+|++|.|+|++...|.
T Consensus 59 A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 87 (111)
T 1whx_A 59 ARKAFRHLAYSKFHHVPLYLEWAPIGVFG 87 (111)
T ss_dssp HHHHHHHHTTCBSSSSBCEEEEEETTTTC
T ss_pred HHHHHHHhCCCEECCeEEEEEECCCCccC
Confidence 99999999999999999999999876653
No 89
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.38 E-value=2.5e-12 Score=101.48 Aligned_cols=78 Identities=21% Similarity=0.340 Sum_probs=66.1
Q ss_pred CCCCCCCCeeEeccccC-CCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEE
Q 040106 95 HNRPTISPTLLLSNMYQ-RPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQ 173 (324)
Q Consensus 95 H~~P~~S~tLlL~NMy~-~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~ 173 (324)
+..+..+.+|+|.||-. +-. +++|++.|++||.|.+|.|. +|++||+
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t-------------------------~~~L~~~F~~~G~v~~v~i~-------~g~afV~ 63 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVS-------------------------KEDLFRIFSPYGHIMQINIK-------NAFGFIQ 63 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCC-------------------------HHHHHHHHGGGSCEEEEEEC-------SSEEEEE
T ss_pred cCCCCCCCEEEEeCCCcccCC-------------------------HHHHHHHHHhcCCEEEEEEe-------CCEEEEE
Confidence 34456788999999865 422 16899999999999999993 7999999
Q ss_pred eCcHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 174 FREEEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 174 F~s~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
|.+.++|.+|+..|||..++|++|.|+++..
T Consensus 64 f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 64 FDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp ESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred ECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 9999999999999999999999999999753
No 90
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.37 E-value=5.4e-13 Score=103.35 Aligned_cols=64 Identities=22% Similarity=0.255 Sum_probs=57.3
Q ss_pred HHHHHHHhccC--CeeEEEEeeCC-CCCceeEEEEEeCcHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 141 EDIFEELSKFG--EIECLNVCDNL-ADHMIGNVYVQFREEEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 141 eDV~eEf~kfG--~I~~V~V~~n~-~~~~~G~vyV~F~s~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
+||.+.|++|| .|.+|.|+.+. ++.++|++||+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 16 ~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~ 82 (90)
T 3p5t_L 16 EDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNK 82 (90)
T ss_dssp HHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC--
T ss_pred HHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCC
Confidence 78999999999 99999998874 567899999999999999999999999999999999999754
No 91
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=2.7e-12 Score=103.49 Aligned_cols=81 Identities=16% Similarity=0.195 Sum_probs=70.0
Q ss_pred CCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCc
Q 040106 98 PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFRE 176 (324)
Q Consensus 98 P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s 176 (324)
.....+|+|.||-... + ++||++.|++||+|++|.|+.+. ++..+|++||+|.+
T Consensus 14 ~~~~~~l~V~nlp~~~--------------t-----------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 68 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHT--------------T-----------DASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMAD 68 (116)
T ss_dssp SCSSSEEEEECCCSSC--------------C-----------HHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESS
T ss_pred CCCCCEEEEeCCCCCC--------------C-----------HHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECC
Confidence 3567899999986532 1 26899999999999999998874 46789999999999
Q ss_pred HHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 177 EEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
.++|++|++.||+ .|+|++|.|+++..
T Consensus 69 ~~~a~~Ai~~~~~-~~~g~~l~V~~a~~ 95 (116)
T 2cqd_A 69 RAAAERACKDPNP-IIDGRKANVNLAYL 95 (116)
T ss_dssp HHHHHHHHTCSSC-EETTEECEEEESTT
T ss_pred HHHHHHHHHhCCC-cCCCEEEEEEEccc
Confidence 9999999999999 89999999999854
No 92
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=5.7e-13 Score=108.65 Aligned_cols=94 Identities=12% Similarity=0.068 Sum_probs=77.7
Q ss_pred CCCCCCCCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEE
Q 040106 91 CSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNV 170 (324)
Q Consensus 91 CSr~H~~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~v 170 (324)
+++.+..+..+.+|+|.||-.+.. ++||.+.|+.| .|.+|.|+.+..+.++|++
T Consensus 6 ~~~~~~~~~~~~~v~V~nLp~~~t-------------------------e~dl~~~F~~~-~v~~v~i~~d~~g~~~G~a 59 (109)
T 2dnn_A 6 SGKPLPINPDDLYVSVHGMPFSAM-------------------------ENDVRDFFHGL-RVDAVHLLKDHVGRNNGNG 59 (109)
T ss_dssp CCCCCCCCHHHHEEEEECCCSSCC-------------------------HHHHHHHTTTS-CCCEEEECCCTTCCCCSEE
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCC-------------------------HHHHHHHhccC-CeeEEEEEECCCCCCCeEE
Confidence 344444444566899999976532 27899999999 8999999988777899999
Q ss_pred EEEeCcHHHHHHHHHHhcCCeeCCeEEEEEeecCCCchhhh
Q 040106 171 YVQFREEEQAAAALHALQGRFYSGRPIIVEFSPVTDFREAT 211 (324)
Q Consensus 171 yV~F~s~edA~~Ai~~LnGR~f~GR~I~vefs~v~~f~ea~ 211 (324)
||+|.+.++|.+|+ .|||..++||.|.|..+....|..+.
T Consensus 60 fV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~~~~~~~ 99 (109)
T 2dnn_A 60 LVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATERQWVAAG 99 (109)
T ss_dssp EEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHHHHHHHH
T ss_pred EEEECCHHHHHHHH-hcCCCeECCeEEEEEECCccchhhcC
Confidence 99999999999999 79999999999999998777776543
No 93
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.4e-12 Score=108.03 Aligned_cols=63 Identities=17% Similarity=0.313 Sum_probs=57.4
Q ss_pred HHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHHHHHHHHHHhcCCee-----CCeEEEEEeecCCCch
Q 040106 141 EDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQAAAALHALQGRFY-----SGRPIIVEFSPVTDFR 208 (324)
Q Consensus 141 eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~edA~~Ai~~LnGR~f-----~GR~I~vefs~v~~f~ 208 (324)
++|++.|++||+|.+|.|+.+ +||+||+|.+.++|.+|++.|||..+ .|++|+|.|+....|.
T Consensus 42 ~~L~~~F~~fG~v~~v~i~~~-----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p~~ 109 (114)
T 2cq2_A 42 NQLLPVLEKCGLVDALLMPPN-----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQWS 109 (114)
T ss_dssp HHHHHHHHHHSCEEEEECCTT-----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCCCCS
T ss_pred HHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccCccc
Confidence 789999999999999998753 79999999999999999999999998 7999999998766664
No 94
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=2.4e-12 Score=103.60 Aligned_cols=78 Identities=13% Similarity=0.225 Sum_probs=66.8
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHH
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEE 178 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~e 178 (324)
.++.+|+|.||-..-. ++||.+.|++||.|.+|.|+.+ +|++||+|.+.+
T Consensus 13 ~p~~~l~V~nLp~~~t-------------------------e~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~ 62 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVT-------------------------ETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEE 62 (101)
T ss_dssp SCCSEEEEESCCTTCC-------------------------HHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHH
T ss_pred CCCCEEEEeCCCCCCC-------------------------HHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHH
Confidence 4688999999876322 2689999999999999999864 899999999999
Q ss_pred HHHHHHHHh--cCCeeCCeEEEEEeecCCC
Q 040106 179 QAAAALHAL--QGRFYSGRPIIVEFSPVTD 206 (324)
Q Consensus 179 dA~~Ai~~L--nGR~f~GR~I~vefs~v~~ 206 (324)
+|.+|++.| +|..+.|++|.|.|+....
T Consensus 63 ~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~ 92 (101)
T 2cq1_A 63 AAITMVNYYSAVTPHLRNQPIYIQYSNHKE 92 (101)
T ss_dssp HHHHHHHHHHHSCCEETTEECEEEECSCSS
T ss_pred HHHHHHHHhccCCceECCcEEEEEEcCccc
Confidence 999999987 4778999999999986543
No 95
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.6e-12 Score=108.17 Aligned_cols=80 Identities=15% Similarity=0.284 Sum_probs=68.8
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHH
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEE 178 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~e 178 (324)
.++.+|+|.||-.... ++||++.|++||+|++|.|+.+ +|++||+|++.+
T Consensus 29 ~ps~~LfVgNLp~~vt-------------------------e~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e 78 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVT-------------------------EGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEE 78 (119)
T ss_dssp SCCSEEEEESCCTTCC-------------------------HHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHH
T ss_pred CCCCEEEEeCCCCCCC-------------------------HHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHH
Confidence 4688999999876422 2789999999999999999875 799999999999
Q ss_pred HHHHHHHHhcC--CeeCCeEEEEEeecCCCch
Q 040106 179 QAAAALHALQG--RFYSGRPIIVEFSPVTDFR 208 (324)
Q Consensus 179 dA~~Ai~~LnG--R~f~GR~I~vefs~v~~f~ 208 (324)
+|.+|++.||| ..++|++|.|.|+......
T Consensus 79 ~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 79 AANTMVNYYTSVTPVLRGQPIYIQFSNHKELK 110 (119)
T ss_dssp HHHHHHHHHHHHCCCBTTBCCEEEECSSSSCC
T ss_pred HHHHHHHHhccCCceECCeEEEEEEccCCCCC
Confidence 99999999984 6899999999998665443
No 96
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=3.9e-12 Score=99.58 Aligned_cols=79 Identities=20% Similarity=0.233 Sum_probs=67.0
Q ss_pred CCCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeC
Q 040106 96 NRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFR 175 (324)
Q Consensus 96 ~~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~ 175 (324)
..+..+.+|+|.|+ . - ++ +||++.|++||+|.+|.|.. .+|++||+|.
T Consensus 10 ~~~~~~~~l~V~n~-~-~--------------t~-----------~~l~~~F~~~G~i~~v~i~~-----~~g~afV~f~ 57 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE-D-M--------------TP-----------TLLRGAFSPFGNIIDLSMDP-----PRNCAFVTYE 57 (97)
T ss_dssp CCCCCCSEEEEECS-S-C--------------CH-----------HHHHHHHTTTSCEEEEEEET-----TTTEEEEEES
T ss_pred CCCCCCCEEEEcCC-C-C--------------CH-----------HHHHHHHhhCCCEEEEEecC-----CCCEEEEEEC
Confidence 34557789999994 2 1 11 68999999999999999953 5899999999
Q ss_pred cHHHHHHHHHHhcCCeeCCeEEEEEeecCCC
Q 040106 176 EEEQAAAALHALQGRFYSGRPIIVEFSPVTD 206 (324)
Q Consensus 176 s~edA~~Ai~~LnGR~f~GR~I~vefs~v~~ 206 (324)
+.++|.+|+..|||..|+|++|.|.++....
T Consensus 58 ~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 58 KMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp SHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred CHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 9999999999999999999999999986543
No 97
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=4.6e-12 Score=101.61 Aligned_cols=80 Identities=19% Similarity=0.365 Sum_probs=69.9
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHH
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEE 178 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~e 178 (324)
..+.+|+|.||-.+-. + ++|.+.|++||+|..|.|+.+.++..+|++||+|.+.+
T Consensus 23 ~~~~~l~V~nlp~~~t--------------~-----------~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~ 77 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMD--------------E-----------QELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTE 77 (114)
T ss_dssp CCTTEEEEESCCTTCC--------------H-----------HHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHH
T ss_pred CCCCEEEEeCCCCCCC--------------H-----------HHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHH
Confidence 4677899999865421 2 68999999999999999998877778999999999999
Q ss_pred HHHHHHHHhcCCee--------CCeEEEEEeec
Q 040106 179 QAAAALHALQGRFY--------SGRPIIVEFSP 203 (324)
Q Consensus 179 dA~~Ai~~LnGR~f--------~GR~I~vefs~ 203 (324)
+|.+|+..|||..+ .|++|.|.|+.
T Consensus 78 ~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 78 KCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSG 110 (114)
T ss_dssp HHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECC
T ss_pred HHHHHHHHhCCCEEcCCccccCCCCceeEEccC
Confidence 99999999999999 58889999975
No 98
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.36 E-value=2.4e-12 Score=104.64 Aligned_cols=72 Identities=14% Similarity=0.224 Sum_probs=60.2
Q ss_pred CCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHHH
Q 040106 100 ISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQ 179 (324)
Q Consensus 100 ~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~ed 179 (324)
...+|+|.||-.+.. + +||.+.|++||+|..|.|+.+ |++||+|.+.++
T Consensus 15 ~~~~l~V~nLp~~~t--------------~-----------~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~ 63 (115)
T 3beg_B 15 SENRVVVSGLPPSGS--------------W-----------QDLKDHMREAGDVCYADVYRD------GTGVVEFVRKED 63 (115)
T ss_dssp --CCEEEEECCSSCC--------------T-----------THHHHHHGGGSCEEEEEECTT------SEEEEEESSHHH
T ss_pred CCcEEEEeCCCCCCC--------------H-----------HHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHH
Confidence 467899999965432 1 578999999999999999765 999999999999
Q ss_pred HHHHHHHhcCCeeCCeEEEEEee
Q 040106 180 AAAALHALQGRFYSGRPIIVEFS 202 (324)
Q Consensus 180 A~~Ai~~LnGR~f~GR~I~vefs 202 (324)
|++|++.|||..|+|++|.+.|.
T Consensus 64 a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 64 MTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp HHHHHHHHTTCBCCCTTSCCCBC
T ss_pred HHHHHHHhCCCEECCcEeeeEEE
Confidence 99999999999999999655444
No 99
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.36 E-value=9.6e-13 Score=103.99 Aligned_cols=80 Identities=20% Similarity=0.240 Sum_probs=66.9
Q ss_pred CCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC--CCCceeEEEEEeC
Q 040106 98 PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL--ADHMIGNVYVQFR 175 (324)
Q Consensus 98 P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~--~~~~~G~vyV~F~ 175 (324)
+..+.+|+|.||-.+-. + +||++.|++|| |.+|.|+.+. ++..+|++||+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t--------------~-----------~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~ 69 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVT--------------E-----------ESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFE 69 (100)
T ss_dssp ----CEEEESCCSSCCS--------------S-----------SHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEEC
T ss_pred CCCCcEEEEeCCCCCCC--------------H-----------HHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEEC
Confidence 35678999999965422 1 58999999999 9999998875 5778999999999
Q ss_pred cHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 176 EEEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 176 s~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
+.++|.+|+ .|||..|+|+.|.|+++..
T Consensus 70 ~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~ 97 (100)
T 2j76_E 70 DLDSLLSAL-SLNEESLGNRRIRVDVADQ 97 (100)
T ss_dssp CHHHHHHHH-HTTTCCBTTBCCCCEECCC
T ss_pred CHHHHHHHH-hcCCCEECCeEEEEEeccC
Confidence 999999999 9999999999999999754
No 100
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=2.1e-12 Score=101.38 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=67.9
Q ss_pred CCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCc
Q 040106 97 RPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRE 176 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s 176 (324)
.+..+.+|+|.||-..- + +++|++.|++||+|..|.|..+ +|++||+|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~--------------t-----------~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~ 60 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDI--------------T-----------EEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLET 60 (99)
T ss_dssp CCCCTTEEEEESCCTTC--------------C-----------HHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSS
T ss_pred cCCCCCEEEEeCCCCCC--------------C-----------HHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECC
Confidence 34577899999985532 1 2689999999999999999865 7999999999
Q ss_pred HHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 177 EEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
.++|.+|++.|||..++|++|.|.++..
T Consensus 61 ~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 61 RTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp SHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred HHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 9999999999999999999999999854
No 101
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.36 E-value=3.4e-12 Score=109.62 Aligned_cols=80 Identities=23% Similarity=0.339 Sum_probs=69.3
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeC-CCCCceeEEEEEeCcH
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDN-LADHMIGNVYVQFREE 177 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n-~~~~~~G~vyV~F~s~ 177 (324)
..+.||+|.||-.... .++|...|++||+|..|.|+.+ .++..+|++||+|.+.
T Consensus 70 ~~~~~l~V~nLp~~~t-------------------------~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 124 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQ-------------------------EDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETH 124 (165)
T ss_dssp C-CEEEEEESCCTTCC-------------------------HHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSH
T ss_pred CCCCEEEEeCCCCCCC-------------------------HHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCH
Confidence 3466899999865321 2689999999999999999887 4667899999999999
Q ss_pred HHHHHHHHHhcCCeeCCeEEEEEeec
Q 040106 178 EQAAAALHALQGRFYSGRPIIVEFSP 203 (324)
Q Consensus 178 edA~~Ai~~LnGR~f~GR~I~vefs~ 203 (324)
++|.+|+..|||..|.|++|.|.|+.
T Consensus 125 ~~A~~Ai~~l~g~~~~g~~l~V~~a~ 150 (165)
T 1rk8_A 125 KQALAAKEALNGAEIMGQTIQVDWCF 150 (165)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEESE
T ss_pred HHHHHHHHHhCCCEECCEEEEEEEec
Confidence 99999999999999999999999974
No 102
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.35 E-value=1.2e-12 Score=107.04 Aligned_cols=86 Identities=17% Similarity=0.085 Sum_probs=73.7
Q ss_pred CCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCC---eeEEEEeeCCCCCceeEEEEEe
Q 040106 98 PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGE---IECLNVCDNLADHMIGNVYVQF 174 (324)
Q Consensus 98 P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~---I~~V~V~~n~~~~~~G~vyV~F 174 (324)
+....||+|.||-.+.. ++||++.|++||. |..|.|+.+..+.++|++||+|
T Consensus 14 ~~~~~~l~V~nLp~~~t-------------------------e~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F 68 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCS-------------------------IEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVEL 68 (118)
T ss_dssp BCCCCEEEEESCCTTCC-------------------------HHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEB
T ss_pred CCCCcEEEEeCCCCCCC-------------------------HHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEE
Confidence 34677899999876432 2789999999999 8999999887788999999999
Q ss_pred CcHHHHHHHHHHhcCCeeCCeEEEEEeecCCCchh
Q 040106 175 REEEQAAAALHALQGRFYSGRPIIVEFSPVTDFRE 209 (324)
Q Consensus 175 ~s~edA~~Ai~~LnGR~f~GR~I~vefs~v~~f~e 209 (324)
.+.++|.+|++ |||..++||.|.|.++....+..
T Consensus 69 ~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~~~~~ 102 (118)
T 2db1_A 69 ESEDDVKLALK-KDRESMGHRYIEVFKSHRTEMDW 102 (118)
T ss_dssp SSHHHHHHHGG-GTTEEETTEEEEEEEECHHHHHH
T ss_pred CCHHHHHHHHh-cCCCeECCeEEEEEECCHHHHHH
Confidence 99999999999 99999999999999986554433
No 103
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.35 E-value=8.5e-12 Score=104.77 Aligned_cols=149 Identities=20% Similarity=0.237 Sum_probs=98.3
Q ss_pred hhhhhccCcceeEeeccCCCCCCCCCCCchhhhhhccccchHHHHHHHHhCCCCC-CcccccccccccccCCCcCCCCCC
Q 040106 18 KRFLREGKREEVCVWIDKLSEIPFPSQDKDSAVKFAGRGLAMAEHLASIFGTEKD-RVNCPFYFKIGACRHGDRCSRLHN 96 (324)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~ma~~l~~~~gte~d-~vnC~Fy~K~GACRhGd~CSr~H~ 96 (324)
.-|-.-|.-.++.|..++.+. ++.+.-.|+-...+--.+..+|..+.|+... ....+...+. ......
T Consensus 22 ~~F~~~G~i~~v~i~~~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~--------~~~~~~ 90 (175)
T 3nmr_A 22 ELFEQYGAVYEINVLRDRSQN---PPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKP--------ADSEKN 90 (175)
T ss_dssp HHHHTTSCEEEEEEEEECSSS---SCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEE--------CGGGCC
T ss_pred HHHHhCCCEEEEEEEecCCCC---CCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcc--------cccccc
Confidence 345555776777776655442 1233333443333333445566666676542 1112211111 011112
Q ss_pred CCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCc
Q 040106 97 RPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRE 176 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s 176 (324)
.+..+.+|+|.||-... + .++|++.|++||.|..|.|+.+..+.++|++||+|.+
T Consensus 91 ~~~~~~~l~v~nl~~~~--------------t-----------~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~ 145 (175)
T 3nmr_A 91 NAVEDRKLFIGMISKKC--------------T-----------ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTT 145 (175)
T ss_dssp SCGGGSEEEEESCCTTC--------------C-----------HHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESS
T ss_pred ccCCCCeEEEcCCCCcC--------------C-----------HHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECC
Confidence 33467789999985532 1 2689999999999999999988777889999999999
Q ss_pred HHHHHHHHHHhcCCeeC---CeEEEEEee
Q 040106 177 EEQAAAALHALQGRFYS---GRPIIVEFS 202 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~---GR~I~vefs 202 (324)
.++|.+|++.|||..+. |++|.|.|+
T Consensus 146 ~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 146 RAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 99999999999998765 499999996
No 104
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.35 E-value=4.4e-12 Score=106.68 Aligned_cols=81 Identities=14% Similarity=0.275 Sum_probs=71.1
Q ss_pred CCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeC
Q 040106 97 RPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFR 175 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~ 175 (324)
.+..+.+|+|.||-.... .+||++.|++||+|..|.|+.+. ++.++|++||+|.
T Consensus 90 ~~~~~~~l~v~nlp~~~t-------------------------~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~ 144 (172)
T 2g4b_A 90 PLPGAHKLFIGGLPNYLN-------------------------DDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYV 144 (172)
T ss_dssp CCTTTTCEEEECCCTTCC-------------------------HHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEES
T ss_pred CCCCCCEEEEEcCCCcCC-------------------------HHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeC
Confidence 345678999999865321 26899999999999999998884 6778999999999
Q ss_pred cHHHHHHHHHHhcCCeeCCeEEEEEee
Q 040106 176 EEEQAAAALHALQGRFYSGRPIIVEFS 202 (324)
Q Consensus 176 s~edA~~Ai~~LnGR~f~GR~I~vefs 202 (324)
+.++|.+|++.|||..++|++|.|.++
T Consensus 145 ~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 145 DINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp STTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 999999999999999999999999986
No 105
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=3.4e-12 Score=101.96 Aligned_cols=76 Identities=20% Similarity=0.260 Sum_probs=67.1
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHH
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEE 178 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~e 178 (324)
..+.+|+|.||-..-. +++|++.|++||+|..|.|+.+ +|++||+|.+.+
T Consensus 23 ~~~~~l~V~nl~~~~t-------------------------~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~ 72 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLT-------------------------DQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHE 72 (109)
T ss_dssp SSCCEEEEECCSSCCC-------------------------HHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHH
T ss_pred CCCcEEEEeCCCCCCC-------------------------HHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHH
Confidence 4577999999876422 2689999999999999999876 799999999999
Q ss_pred HHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 179 QAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 179 dA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
+|.+|+..|||..|+|++|.|.++..
T Consensus 73 ~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 73 SAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp HHHHHHHHHTTCEETTEECEEECCCC
T ss_pred HHHHHHHHcCCCEECCcEEEEEecCC
Confidence 99999999999999999999999854
No 106
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=2.8e-12 Score=98.97 Aligned_cols=76 Identities=17% Similarity=0.227 Sum_probs=66.3
Q ss_pred CCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcH
Q 040106 98 PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREE 177 (324)
Q Consensus 98 P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~ 177 (324)
+..+.+|+|.||-.+- ++ ++|++.|++||+|.+|.|+ +|++||+|.+.
T Consensus 5 ~~~~~~l~V~nlp~~~--------------t~-----------~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~ 52 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREA--------------TE-----------QEIRSLFEQYGKVLECDII-------KNYGFVHIEDK 52 (90)
T ss_dssp SSCCEEEEEESCCSSC--------------CH-----------HHHHHHHHTSSCEEEEEEE-------TTEEEEEESSH
T ss_pred CCCCeEEEEeCCCCCC--------------CH-----------HHHHHHHHhCCCEEEEEEE-------CCEEEEEECCH
Confidence 4567899999986532 12 6899999999999999997 68999999999
Q ss_pred HHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 040106 178 EQAAAALHALQGRFYSGRPIIVEFSPVT 205 (324)
Q Consensus 178 edA~~Ai~~LnGR~f~GR~I~vefs~v~ 205 (324)
++|.+|+..|||..++|++|.|+++...
T Consensus 53 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 53 TAAEDAIRNLHHYKLHGVNINVEASKNK 80 (90)
T ss_dssp HHHHHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred HHHHHHHHHhcCCccCCcEEEEEECCCC
Confidence 9999999999999999999999998543
No 107
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.34 E-value=6.2e-12 Score=96.03 Aligned_cols=80 Identities=14% Similarity=0.201 Sum_probs=67.6
Q ss_pred CCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeC
Q 040106 97 RPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFR 175 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~ 175 (324)
.+..+.+|.|.||-... + +++|.+.|++||+|.+|.|+.+. ++..+|++||+|.
T Consensus 7 ~~~~~~~l~V~nlp~~~--------------t-----------~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~ 61 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDT--------------S-----------KKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFK 61 (87)
T ss_dssp CCSCTTEEEEECCCTTC--------------C-----------HHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred CCCCCCEEEEeCCCCCC--------------C-----------HHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEEC
Confidence 34577899999995532 1 26899999999999999998874 4678999999999
Q ss_pred cHHHHHHHHHHhcCCeeCCeEEEEEee
Q 040106 176 EEEQAAAALHALQGRFYSGRPIIVEFS 202 (324)
Q Consensus 176 s~edA~~Ai~~LnGR~f~GR~I~vefs 202 (324)
+.++|.+|++ ++|..++|++|.|.++
T Consensus 62 ~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 62 DAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp STHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 9999999995 5888999999999874
No 108
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=7.9e-13 Score=108.33 Aligned_cols=88 Identities=16% Similarity=0.202 Sum_probs=72.9
Q ss_pred CCCCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeE-EEEeeCCCCCceeEEEEE
Q 040106 95 HNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIEC-LNVCDNLADHMIGNVYVQ 173 (324)
Q Consensus 95 H~~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~-V~V~~n~~~~~~G~vyV~ 173 (324)
...+....+|+|.||-.+.. ++||.+.|++||.|.. +.|..+.++..+|++||+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t-------------------------e~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~ 73 (124)
T 1wel_A 19 RSPHEAGFCVYLKGLPFEAE-------------------------NKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVE 73 (124)
T ss_dssp SSCCCCCCEEEEECCCTTCC-------------------------HHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEE
T ss_pred CCCCCCCcEEEEeCCCCCCC-------------------------HHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEE
Confidence 33455678999999865422 2789999999999998 555666677899999999
Q ss_pred eCcHHHHHHHHHHhcCCeeCCeEEEEEeecCCCch
Q 040106 174 FREEEQAAAALHALQGRFYSGRPIIVEFSPVTDFR 208 (324)
Q Consensus 174 F~s~edA~~Ai~~LnGR~f~GR~I~vefs~v~~f~ 208 (324)
|.+.++|.+|+. |||..|+|+.|.|.++....+.
T Consensus 74 F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~~~~ 107 (124)
T 1wel_A 74 FRNEADYKAALC-RHKQYMGNRFIQVHPITKKGML 107 (124)
T ss_dssp BSSSHHHHHHHT-SCSBCSTTSCBEEEEECHHHHH
T ss_pred ECCHHHHHHHHH-hCCCeECCcEEEEEECCHHHHH
Confidence 999999999999 9999999999999998765543
No 109
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=2.9e-12 Score=102.08 Aligned_cols=86 Identities=19% Similarity=0.166 Sum_probs=73.6
Q ss_pred CCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeE-EEEeeCCCCCceeEEEEEeC
Q 040106 97 RPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIEC-LNVCDNLADHMIGNVYVQFR 175 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~-V~V~~n~~~~~~G~vyV~F~ 175 (324)
.+..+.+|+|.||-.... ++||++.|++||.|.+ |.|+.+.++.++|++||+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t-------------------------e~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~ 65 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCS-------------------------KEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFA 65 (104)
T ss_dssp SCSCCCEEEEESCCTTCC-------------------------HHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEES
T ss_pred CCCCCCEEEEeCCCCCCC-------------------------HHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEEC
Confidence 345678999999876432 2789999999999998 88888877789999999999
Q ss_pred cHHHHHHHHHHhcCCeeCCeEEEEEeecCCCch
Q 040106 176 EEEQAAAALHALQGRFYSGRPIIVEFSPVTDFR 208 (324)
Q Consensus 176 s~edA~~Ai~~LnGR~f~GR~I~vefs~v~~f~ 208 (324)
+.++|.+|+.. ||..++||.|.|.++....+.
T Consensus 66 ~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~~~~ 97 (104)
T 1wg5_A 66 SQEIAEKALKK-HKERIGHRYIEIFKSSRAEVR 97 (104)
T ss_dssp SHHHHHHHHTT-TTCCSSSSCCEEEEECTTTSC
T ss_pred CHHHHHHHHHh-CcchhCCcEEEEEECCHHHHH
Confidence 99999999997 999999999999998766554
No 110
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.34 E-value=1.9e-12 Score=113.59 Aligned_cols=85 Identities=22% Similarity=0.302 Sum_probs=73.3
Q ss_pred CCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCc
Q 040106 97 RPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRE 176 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s 176 (324)
.+..+.+|+|.||-..- + ++||.+.|++||+|+.|.|+.+.++..+|++||+|.+
T Consensus 84 ~~~~~~~l~V~nLp~~~--------------t-----------e~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~ 138 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGV--------------S-----------DADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFER 138 (177)
T ss_dssp SCTTCEEEEEECCCSCC--------------C-----------HHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESC
T ss_pred CCCCCCEEEEeCCCCCC--------------C-----------HHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCC
Confidence 34567799999985432 1 2689999999999999999988777789999999999
Q ss_pred HHHHHHHHHHhcCCeeCCeEEEEEeecCCC
Q 040106 177 EEQAAAALHALQGRFYSGRPIIVEFSPVTD 206 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~GR~I~vefs~v~~ 206 (324)
.++|.+|++.|||..|+|++|.|+|+....
T Consensus 139 ~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~ 168 (177)
T 2f3j_A 139 RADALKAMKQYKGVPLDGRPMDIQLVASQI 168 (177)
T ss_dssp HHHHHHHHHHSTTCBCSSSBCEEEEESSGG
T ss_pred HHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 999999999999999999999999986543
No 111
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.34 E-value=1.3e-12 Score=102.05 Aligned_cols=80 Identities=16% Similarity=0.172 Sum_probs=67.3
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeC-CCCCceeEEEEEeCcH
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDN-LADHMIGNVYVQFREE 177 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n-~~~~~~G~vyV~F~s~ 177 (324)
..+.+|+|.||-..- + ++||++.|++||.|..+.++.+ .++..+|++||+|.+.
T Consensus 13 ~~~~~l~v~nLp~~~--------------t-----------~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~ 67 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTV--------------S-----------IDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR 67 (98)
T ss_dssp CSSEEEEEESCCTTC--------------C-----------HHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCH
T ss_pred CCCCEEEEeCCCCCC--------------C-----------HHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCH
Confidence 456789999985432 1 2689999999999987766554 4567899999999999
Q ss_pred HHHHHHHHHhcCCeeCCeEEEEEeec
Q 040106 178 EQAAAALHALQGRFYSGRPIIVEFSP 203 (324)
Q Consensus 178 edA~~Ai~~LnGR~f~GR~I~vefs~ 203 (324)
++|++|++.|||..|+|++|.|+++.
T Consensus 68 ~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 68 DEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp HHHHHHHHHTTTCEETTEECEEEESS
T ss_pred HHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 99999999999999999999999974
No 112
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=1.8e-12 Score=104.24 Aligned_cols=78 Identities=24% Similarity=0.345 Sum_probs=67.6
Q ss_pred CCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCC-CCceeEEEEEeCcHHH
Q 040106 101 SPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLA-DHMIGNVYVQFREEEQ 179 (324)
Q Consensus 101 S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~-~~~~G~vyV~F~s~ed 179 (324)
+.+|+|.||-..-. ++||.+.|++||.|.+|.|+.+.. +..+|++||+|.+.++
T Consensus 25 ~~~l~V~nlp~~~t-------------------------~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~ 79 (114)
T 2cq4_A 25 ARTVFCMQLAARIR-------------------------PRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQS 79 (114)
T ss_dssp HTEEEEESCCTTCC-------------------------HHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGG
T ss_pred CCEEEEeCCCCCCC-------------------------HHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHH
Confidence 46899999855321 268999999999999999987754 6689999999999999
Q ss_pred HHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 180 AAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 180 A~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
|.+|+ .|||..|+|+.|.|.++..
T Consensus 80 a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 80 VPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred HHHHH-HcCCCEeCCeEEEEEecCC
Confidence 99999 9999999999999999754
No 113
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.34 E-value=7.3e-12 Score=104.15 Aligned_cols=82 Identities=18% Similarity=0.321 Sum_probs=71.4
Q ss_pred CCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCcHH
Q 040106 100 ISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFREEE 178 (324)
Q Consensus 100 ~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s~e 178 (324)
++.+|+|.||-..-. +++|.+.|++||+|.+|.|+.+. ++..+|++||+|.+.+
T Consensus 1 s~~~l~v~nlp~~~~-------------------------~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~ 55 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMT-------------------------QEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 55 (167)
T ss_dssp CCSEEEEESCCTTCC-------------------------HHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CcceEEEcCCCCCCC-------------------------HHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHH
Confidence 467899999865422 26899999999999999998876 6778999999999999
Q ss_pred HHHHHHHHhcCCeeCCeEEEEEeecCCC
Q 040106 179 QAAAALHALQGRFYSGRPIIVEFSPVTD 206 (324)
Q Consensus 179 dA~~Ai~~LnGR~f~GR~I~vefs~v~~ 206 (324)
+|.+|++.|||..+.|++|.|.++....
T Consensus 56 ~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 83 (167)
T 1fxl_A 56 DAEKAINTLNGLRLQTKTIKVSYARPSS 83 (167)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred HHHHHHHHcCCCccCCceEEEEecCCCc
Confidence 9999999999999999999999986543
No 114
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.34 E-value=4.8e-12 Score=101.26 Aligned_cols=75 Identities=16% Similarity=0.270 Sum_probs=65.7
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHH
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEE 178 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~e 178 (324)
....+|+|.||-.+.. ++||.+.|++||+|..|.|+.+ |++||+|.+.+
T Consensus 13 ~~~~~l~V~nLp~~~t-------------------------~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~ 61 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGS-------------------------WQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKE 61 (108)
T ss_dssp SCCCEEEEESCCSSCC-------------------------HHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHH
T ss_pred CCCCEEEEeCCCCCCC-------------------------HHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHH
Confidence 4567899999865422 2789999999999999999875 89999999999
Q ss_pred HHHHHHHHhcCCeeCC-----eEEEEEeecC
Q 040106 179 QAAAALHALQGRFYSG-----RPIIVEFSPV 204 (324)
Q Consensus 179 dA~~Ai~~LnGR~f~G-----R~I~vefs~v 204 (324)
+|++|++.|||..|+| ++|.|+++..
T Consensus 62 ~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~ 92 (108)
T 1x4c_A 62 DMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 92 (108)
T ss_dssp HHHHHHHHSSSEEEECTTSCEEEEEEEESSC
T ss_pred HHHHHHHHHCcCCccCCcCcceEEEEEeCCC
Confidence 9999999999999999 9999999743
No 115
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.34 E-value=4.2e-12 Score=107.26 Aligned_cols=84 Identities=18% Similarity=0.322 Sum_probs=72.1
Q ss_pred CCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeC
Q 040106 97 RPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFR 175 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~ 175 (324)
.+..+.+|+|.||-..- + ++||.+.|++||+|..|.|+.+. ++..+|++||+|.
T Consensus 66 ~~~~~~~l~v~nl~~~~--------------~-----------~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~ 120 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRT--------------S-----------PDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFH 120 (158)
T ss_dssp CCCBCCEEEEESCCTTC--------------C-----------HHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEES
T ss_pred CCCCCCEEEEeCCCCCC--------------C-----------HHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEEC
Confidence 33557899999985532 1 26899999999999999998874 6779999999999
Q ss_pred cHHHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 040106 176 EEEQAAAALHALQGRFYSGRPIIVEFSPVT 205 (324)
Q Consensus 176 s~edA~~Ai~~LnGR~f~GR~I~vefs~v~ 205 (324)
+.++|.+|+..|||..++|++|.|.++...
T Consensus 121 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 121 DKRDAEDAMDAMDGAVLDGRELRVQMARYG 150 (158)
T ss_dssp BHHHHHHHHHHSTTEESSSSEEEEEEECCS
T ss_pred CHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 999999999999999999999999998643
No 116
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.34 E-value=3.8e-12 Score=102.61 Aligned_cols=75 Identities=21% Similarity=0.407 Sum_probs=65.5
Q ss_pred CCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcH
Q 040106 98 PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREE 177 (324)
Q Consensus 98 P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~ 177 (324)
+..+.+|+|.||-.+- + ++||++.|++||+|..|.|+ +|++||+|.+.
T Consensus 28 ~~~~~~l~V~nLp~~~--------------t-----------~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~ 75 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDV--------------Q-----------ESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEA 75 (108)
T ss_dssp CCSCSEEEECSSCTTC--------------C-----------HHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSH
T ss_pred CCCCCEEEEECCCCCC--------------C-----------HHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCH
Confidence 3567889999985432 1 26899999999999999997 68999999999
Q ss_pred HHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 178 EQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 178 edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
++|.+|+..|||..|+|++|.|.|+..
T Consensus 76 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 76 ESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp HHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred HHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 999999999999999999999999854
No 117
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=5.2e-13 Score=101.68 Aligned_cols=80 Identities=15% Similarity=0.148 Sum_probs=68.2
Q ss_pred CCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCc
Q 040106 98 PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFRE 176 (324)
Q Consensus 98 P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s 176 (324)
+..+.+|+|.||-.+- + +++|.+.|++||+|.+|.|+.+. ++..+|++||+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~--------------t-----------~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~ 56 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGT--------------T-----------DQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDS 56 (85)
T ss_dssp CCCCCEEEEESCCTTC--------------C-----------HHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESC
T ss_pred CCCCcEEEEeCCCCCC--------------C-----------HHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECC
Confidence 4678899999985432 1 26899999999999999998774 56789999999999
Q ss_pred HHHHHHHHHHhcCCeeCCeEEEEEee
Q 040106 177 EEQAAAALHALQGRFYSGRPIIVEFS 202 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~GR~I~vefs 202 (324)
.++|.+|+..|||..++|+.|.+.+.
T Consensus 57 ~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 57 PSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp HHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred HHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 99999999999999999999977653
No 118
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=5e-12 Score=99.31 Aligned_cols=81 Identities=28% Similarity=0.285 Sum_probs=67.7
Q ss_pred CCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCc
Q 040106 97 RPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRE 176 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s 176 (324)
.+..+.+|+|.||-.+-. ++||++.|++||.| .|+.+..+..+|++||+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t-------------------------~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~ 62 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSAT-------------------------EETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFAS 62 (101)
T ss_dssp CSCCCSEEEEESCCTTCC-------------------------HHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCC-------------------------HHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECC
Confidence 345788999999866421 26889999999988 55555566789999999999
Q ss_pred HHHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 040106 177 EEQAAAALHALQGRFYSGRPIIVEFSPVT 205 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~GR~I~vefs~v~ 205 (324)
.++|++|+..|||..|+|++|.|+++...
T Consensus 63 ~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 63 FEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp HHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred HHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 99999999999999999999999998543
No 119
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=2.5e-12 Score=101.79 Aligned_cols=82 Identities=15% Similarity=0.192 Sum_probs=70.3
Q ss_pred CCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCc
Q 040106 98 PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFRE 176 (324)
Q Consensus 98 P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s 176 (324)
+..+.+|+|.||-.... ++||++.|++||+|..|.|+.+. ++..+|++||+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t-------------------------~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~ 67 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTT-------------------------QETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 67 (105)
T ss_dssp SSSSSEECCBSCCTTCC-------------------------HHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESS
T ss_pred CCCCCEEEEeCCCCCCC-------------------------HHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECC
Confidence 45678899998865321 26899999999999999998874 56789999999999
Q ss_pred HHHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 040106 177 EEQAAAALHALQGRFYSGRPIIVEFSPVT 205 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~GR~I~vefs~v~ 205 (324)
.++|.+|+.. ||..|+|++|.|.++...
T Consensus 68 ~~~a~~a~~~-~~~~~~g~~l~V~~a~~~ 95 (105)
T 2dh8_A 68 PNCVGTVLAS-RPHTLDGRNIDPKPCTPR 95 (105)
T ss_dssp TTHHHHHHHH-CSEEETTEEEBCCCSCCS
T ss_pred HHHHHHHHHh-CCCeECCEEEEEEEccCC
Confidence 9999999999 999999999999997543
No 120
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.33 E-value=3.6e-12 Score=103.71 Aligned_cols=78 Identities=22% Similarity=0.366 Sum_probs=67.7
Q ss_pred CCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeC-CCCCceeEEEEEeCcHHH
Q 040106 101 SPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDN-LADHMIGNVYVQFREEEQ 179 (324)
Q Consensus 101 S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n-~~~~~~G~vyV~F~s~ed 179 (324)
+.+|+|.||-..- + ++||.+.|++||+|.+|.|+.+ .++..+|++||+|.+.++
T Consensus 36 ~~~l~V~nlp~~~--------------t-----------~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 90 (124)
T 2jwn_A 36 KRSVYVGNVDYGS--------------T-----------AQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNS 90 (124)
T ss_dssp HTEEEEEEECTTC--------------C-----------HHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHH
T ss_pred CCEEEEeCCCCCC--------------C-----------HHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHH
Confidence 5689999985532 1 2689999999999999999887 456789999999999999
Q ss_pred HHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 180 AAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 180 A~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
|.+|+ .|||..|+|++|.|.++..
T Consensus 91 a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 91 VDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHHHH-TTTTCEETTEECEEEESSC
T ss_pred HHHHH-hcCCCeECCeEEEEEECCC
Confidence 99999 8999999999999999753
No 121
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.33 E-value=7.1e-12 Score=99.14 Aligned_cols=74 Identities=20% Similarity=0.352 Sum_probs=64.9
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHH
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEE 178 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~e 178 (324)
..+.+|+|.||-.+-. ++||++.|++||+|..|.|+ +|++||+|.+.+
T Consensus 9 ~~~~~l~V~nl~~~~t-------------------------~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~ 56 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVT-------------------------EEILEKAFSQFGKLERVKKL-------KDYAFIHFDERD 56 (103)
T ss_dssp CCCCCEEEECCCTTCC-------------------------HHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHH
T ss_pred CCCCEEEEeCCCCCCC-------------------------HHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHH
Confidence 4678999999865422 26899999999999999986 569999999999
Q ss_pred HHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 179 QAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 179 dA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
+|.+|++.|||..|+|++|.|.++..
T Consensus 57 ~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 57 GAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp HHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred HHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 99999999999999999999999854
No 122
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=2e-12 Score=104.55 Aligned_cols=86 Identities=16% Similarity=0.207 Sum_probs=73.6
Q ss_pred CCCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCe-eEEEEeeCCCCCceeEEEEEe
Q 040106 96 NRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEI-ECLNVCDNLADHMIGNVYVQF 174 (324)
Q Consensus 96 ~~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I-~~V~V~~n~~~~~~G~vyV~F 174 (324)
..|..+.||+|.||-.... ++||.+.|++||.| ..|.|+.+.++..+|++||+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t-------------------------~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F 64 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSIT-------------------------KMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQF 64 (114)
T ss_dssp SCCSCCCEEEEESCCTTSC-------------------------HHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEEC
T ss_pred CCCCCccEEEEeCcCCcCC-------------------------HHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEE
Confidence 3566788999999866422 26899999999999 899998887777999999999
Q ss_pred CcHHHHHHHHHHhcCCeeCCeEEEEEeecCCCc
Q 040106 175 REEEQAAAALHALQGRFYSGRPIIVEFSPVTDF 207 (324)
Q Consensus 175 ~s~edA~~Ai~~LnGR~f~GR~I~vefs~v~~f 207 (324)
.+.++|.+|+.. ||..|+|++|.|.++.....
T Consensus 65 ~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~~~ 96 (114)
T 2cpy_A 65 KNEDDARKSERL-HRKKLNGREAFVHVVTLEDM 96 (114)
T ss_dssp SSHHHHHHHGGG-CSEEETTEEEEEEEECHHHH
T ss_pred CCHHHHHHHHHh-CCCccCCeEEEEEECCHHHH
Confidence 999999999987 99999999999999865443
No 123
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.32 E-value=2.7e-12 Score=100.84 Aligned_cols=74 Identities=20% Similarity=0.280 Sum_probs=64.9
Q ss_pred CCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHHH
Q 040106 100 ISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQ 179 (324)
Q Consensus 100 ~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~ed 179 (324)
.+.+|+|.||-.+-. +++|++.|++||.|.+|.|.. .+|++||+|.+.++
T Consensus 26 ~~~~l~V~nlp~~~~-------------------------~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~ 75 (101)
T 2la4_A 26 RVTTAYIGNIPHFAT-------------------------EADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQ 75 (101)
T ss_dssp SCCEEEEESCCTTCC-------------------------HHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHH
T ss_pred CCCEEEEcCCCcccC-------------------------HHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHH
Confidence 467999999865321 268999999999999999984 48999999999999
Q ss_pred HHHHHHHhcCCeeCCeEEEEEeec
Q 040106 180 AAAALHALQGRFYSGRPIIVEFSP 203 (324)
Q Consensus 180 A~~Ai~~LnGR~f~GR~I~vefs~ 203 (324)
|.+|+..|||..++|+.|.|.++.
T Consensus 76 A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 76 AAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp HHHHHHHHTTCEETTEECCCCBCC
T ss_pred HHHHHHHhCCCeECCeEEEEEecc
Confidence 999999999999999999999874
No 124
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.32 E-value=9.2e-12 Score=105.31 Aligned_cols=62 Identities=19% Similarity=0.252 Sum_probs=56.1
Q ss_pred HHHHHHHhccCCeeEEEEeeCCCCCceeE-EEEEeCcHHHHHHHHHHhcCCeeCC--eEEEEEeecCCC
Q 040106 141 EDIFEELSKFGEIECLNVCDNLADHMIGN-VYVQFREEEQAAAALHALQGRFYSG--RPIIVEFSPVTD 206 (324)
Q Consensus 141 eDV~eEf~kfG~I~~V~V~~n~~~~~~G~-vyV~F~s~edA~~Ai~~LnGR~f~G--R~I~vefs~v~~ 206 (324)
++|++.|++||+|.+|.|... .+|+ +||+|.+.++|.+|+++|||..|.| ++|.|+|+....
T Consensus 43 ~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 43 DVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp HHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred HHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 689999999999999999764 3688 9999999999999999999999988 999999997654
No 125
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=2.8e-12 Score=102.57 Aligned_cols=84 Identities=17% Similarity=0.178 Sum_probs=71.6
Q ss_pred CCCCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEe
Q 040106 95 HNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQF 174 (324)
Q Consensus 95 H~~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F 174 (324)
...|..+.+|+|.||-.... ++||++.|++||. ++|.|+.+.++.++|++||+|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t-------------------------e~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F 62 (102)
T 1wez_A 9 SFQSTTGHCVHMRGLPYRAT-------------------------ENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEF 62 (102)
T ss_dssp SCCCSSSCEEEEESCCTTCC-------------------------HHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEEC
T ss_pred CCCCCCCCEEEEeCCCCCCC-------------------------HHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEE
Confidence 45567888999999866422 2789999999995 599998887778999999999
Q ss_pred CcHHHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 040106 175 REEEQAAAALHALQGRFYSGRPIIVEFSPVT 205 (324)
Q Consensus 175 ~s~edA~~Ai~~LnGR~f~GR~I~vefs~v~ 205 (324)
.+.++|++|+ .|||..++||.|.|..+...
T Consensus 63 ~~~~~a~~Al-~~~~~~~~gr~i~V~~~~~~ 92 (102)
T 1wez_A 63 ATHEDAVAAM-AKDKANMQHRYVELFLNSTA 92 (102)
T ss_dssp SSSHHHHHHH-TTSSCCSSSSCCEEEEECCC
T ss_pred CCHHHHHHHH-HhCCCeECCcEEEEEECCCC
Confidence 9999999999 58999999999999987643
No 126
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.32 E-value=6.6e-12 Score=108.09 Aligned_cols=80 Identities=14% Similarity=0.207 Sum_probs=69.0
Q ss_pred CCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccC--CeeEEEEeeCC-CCCceeEEEEEeCc
Q 040106 100 ISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFG--EIECLNVCDNL-ADHMIGNVYVQFRE 176 (324)
Q Consensus 100 ~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG--~I~~V~V~~n~-~~~~~G~vyV~F~s 176 (324)
...+|+|.||-..-. ++||.+.|++|| .|.+|.|+.+. ++..+||+||+|.+
T Consensus 54 ~~~~lfVgnLp~~~t-------------------------e~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~ 108 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTT-------------------------DQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVAS 108 (156)
T ss_dssp --CEEEEECCCTTCC-------------------------HHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESC
T ss_pred CCCEEEEeCCCCCCC-------------------------HHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECC
Confidence 456899999865322 268999999999 99999998874 57799999999999
Q ss_pred HHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 177 EEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
.++|.+|+..|||..|+|++|.|.++..
T Consensus 109 ~~~A~~Ai~~lng~~~~Gr~l~V~~a~~ 136 (156)
T 3n9u_C 109 ENSVHKLLELLPGKVLNGEKVDVRPATR 136 (156)
T ss_dssp HHHHHHHHHHSTTCEETTEECEEEECCH
T ss_pred HHHHHHHHHHcCCCEECCeEeEEEEcCC
Confidence 9999999999999999999999999854
No 127
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.31 E-value=1e-11 Score=103.89 Aligned_cols=80 Identities=20% Similarity=0.345 Sum_probs=69.6
Q ss_pred CCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCc
Q 040106 98 PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFRE 176 (324)
Q Consensus 98 P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s 176 (324)
+..+.+|+|.||-.... .++|++.|++||.|..|.|+.+. ++.++|++||+|.+
T Consensus 86 ~~~~~~l~v~nl~~~~t-------------------------~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~ 140 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTIT-------------------------DDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNK 140 (168)
T ss_dssp TTTTCEEEEESCCTTCC-------------------------HHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred cCCCCCEEEeCCCCCCC-------------------------HHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECC
Confidence 35678999999865321 26899999999999999998875 56789999999999
Q ss_pred HHHHHHHHHHhcCCeeCC--eEEEEEee
Q 040106 177 EEQAAAALHALQGRFYSG--RPIIVEFS 202 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~G--R~I~vefs 202 (324)
.++|.+|+..|||..|+| ++|.|.|+
T Consensus 141 ~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 141 REEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 999999999999999988 99999985
No 128
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.31 E-value=2.3e-12 Score=95.84 Aligned_cols=61 Identities=13% Similarity=0.192 Sum_probs=56.1
Q ss_pred HHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCcHHHHHHHHHHhcCCeeCCeEEEEEee
Q 040106 141 EDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFREEEQAAAALHALQGRFYSGRPIIVEFS 202 (324)
Q Consensus 141 eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s~edA~~Ai~~LnGR~f~GR~I~vefs 202 (324)
+||.+.|++||+|.+|.|+.+. ++..+|++||+|.+.++|++|++ |||..++|++|.|.++
T Consensus 14 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 14 EDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp HHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred HHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 6899999999999999998875 56789999999999999999998 9999999999999874
No 129
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.31 E-value=6.1e-12 Score=100.66 Aligned_cols=75 Identities=23% Similarity=0.405 Sum_probs=65.2
Q ss_pred CCCCCeeEeccccCC-CCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCc
Q 040106 98 PTISPTLLLSNMYQR-PDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRE 176 (324)
Q Consensus 98 P~~S~tLlL~NMy~~-p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s 176 (324)
+..+.+|+|.||-.. -. ++||++.|++||+|.+|.| .+|++||+|.+
T Consensus 24 ~~~~~~l~V~nl~~~~~t-------------------------~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~ 71 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVK-------------------------KSDVETIFSKYGRVAGCSV-------HKGYAFVQYSN 71 (110)
T ss_dssp TTCSSEEEECSCCCSSCC-------------------------HHHHHHHHGGGSCCSEEEE-------ETTEEEEECSS
T ss_pred CCCCcEEEEeCCCcccCC-------------------------HHHHHHHHHhCCCeEEEEE-------eCCEEEEEECC
Confidence 345679999998653 21 2789999999999999999 37999999999
Q ss_pred HHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 177 EEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
.++|.+|++.|||..|+|++|.|+++..
T Consensus 72 ~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 72 ERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp SHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 9999999999999999999999999853
No 130
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=9.7e-12 Score=95.88 Aligned_cols=77 Identities=19% Similarity=0.257 Sum_probs=66.5
Q ss_pred CCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCc
Q 040106 97 RPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRE 176 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s 176 (324)
.+..+.+|+|.||-.+- + +++|.+.|++||+|.+|.|+ +|++||+|.+
T Consensus 5 ~~~~~~~l~V~nlp~~~--------------t-----------~~~l~~~F~~~G~v~~~~~~-------~~~afV~f~~ 52 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAAC--------------T-----------SQELRSLFERRGRVIECDVV-------KDYAFVHMEK 52 (90)
T ss_dssp SSCCSCCEEEESCCTTC--------------C-----------HHHHHHHHHHHSCEEEEEEC-------SSCEEEEESC
T ss_pred CCCCCCEEEEeCCCCCC--------------C-----------HHHHHHHHHcCCCEEEEEEE-------CCEEEEEECC
Confidence 45678899999986532 1 26899999999999999997 4599999999
Q ss_pred HHHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 040106 177 EEQAAAALHALQGRFYSGRPIIVEFSPVT 205 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~GR~I~vefs~v~ 205 (324)
.++|.+|+..|||..++|++|.|.++...
T Consensus 53 ~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 53 EADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred HHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 99999999999999999999999998543
No 131
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.30 E-value=5e-12 Score=103.54 Aligned_cols=78 Identities=21% Similarity=0.231 Sum_probs=66.3
Q ss_pred CCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccC-CeeEEEEeeCCCCCceeEEEEEeCc
Q 040106 98 PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFG-EIECLNVCDNLADHMIGNVYVQFRE 176 (324)
Q Consensus 98 P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG-~I~~V~V~~n~~~~~~G~vyV~F~s 176 (324)
|....+|+|.||-.+.. ++||++.|++|| +|..+.|... ..+|++||+|.+
T Consensus 25 p~~~~~l~VgnLp~~~t-------------------------e~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~ 76 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCS-------------------------WQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPS 76 (111)
T ss_dssp CCCCEEEEEECSSCCCC-------------------------HHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESS
T ss_pred CCCCCEEEEECCCCCCC-------------------------HHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECC
Confidence 44556899998865422 278999999999 9999999643 368999999999
Q ss_pred HHHHHHHHHHhcCCeeCCeEEEEEeec
Q 040106 177 EEQAAAALHALQGRFYSGRPIIVEFSP 203 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~GR~I~vefs~ 203 (324)
.++|++|++.|||..|+|++|.|+++.
T Consensus 77 ~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 77 EEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp HHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 999999999999999999999999974
No 132
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.30 E-value=5.3e-12 Score=104.13 Aligned_cols=64 Identities=19% Similarity=0.217 Sum_probs=57.2
Q ss_pred HHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHHHHHHHHHHhcCCeeCCeEEEEEeecCCCchh
Q 040106 141 EDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQAAAALHALQGRFYSGRPIIVEFSPVTDFRE 209 (324)
Q Consensus 141 eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~edA~~Ai~~LnGR~f~GR~I~vefs~v~~f~e 209 (324)
+||.+.|++||+|.+|.|.. .+|++||+|.+.++|.+|+..|||..++|++|.|.++.......
T Consensus 52 ~~L~~~F~~~G~I~~v~i~~-----~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~~~ 115 (121)
T 2bz2_A 52 TLLRGAFSPFGNIIDLSMDP-----PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPMLD 115 (121)
T ss_dssp HHHHHHHSTTCCCSCEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC--
T ss_pred HHHHHHHHccCCEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCCCC
Confidence 68999999999999999963 58999999999999999999999999999999999987655444
No 133
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=1.3e-11 Score=95.57 Aligned_cols=76 Identities=16% Similarity=0.310 Sum_probs=65.8
Q ss_pred CCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCc
Q 040106 97 RPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRE 176 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s 176 (324)
.+..+.+|+|.||-.+- + +++|.+.|++||+|..|.|. +|++||+|.+
T Consensus 6 ~~~~~~~l~V~nLp~~~--------------t-----------~~~l~~~F~~~G~v~~v~~~-------~~~afV~f~~ 53 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTC--------------T-----------NQELRAKFEEYGPVIECDIV-------KDYAFVHMER 53 (92)
T ss_dssp CCCSSEEEEEESCCSSC--------------C-----------HHHHHHHHHTTSCCCEEEEC-------SSEEEEEESC
T ss_pred CCCCCCEEEEeCCCCCC--------------C-----------HHHHHHHHHhcCCeEEEEEE-------CCEEEEEECC
Confidence 45677899999995432 1 26899999999999999997 4599999999
Q ss_pred HHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 177 EEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
.++|.+|+..|||..|.|++|.|.++..
T Consensus 54 ~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 54 AEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp HHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred HHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 9999999999999999999999999854
No 134
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=4.9e-12 Score=101.44 Aligned_cols=83 Identities=24% Similarity=0.381 Sum_probs=67.6
Q ss_pred CCCCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCee----EEEEeeCCCCCceeEE
Q 040106 95 HNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIE----CLNVCDNLADHMIGNV 170 (324)
Q Consensus 95 H~~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~----~V~V~~n~~~~~~G~v 170 (324)
...+..+.+|+|.||-..- + +++|.+.|++||.|. .+.+. ++..+|++
T Consensus 19 ~~~~~~~~~l~V~nLp~~~--------------t-----------~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~a 70 (115)
T 2cpx_A 19 YNPGEPNKVLYLKNLSPRV--------------T-----------ERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQA 70 (115)
T ss_dssp CCCCSCCSEEEEECCCTTC--------------C-----------HHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEE
T ss_pred cCCCCCCCEEEEeCCCCCC--------------C-----------HHHHHHHHHHhCCccceEEEEEcC---CCccceEE
Confidence 3344578899999986532 1 268899999999994 44444 45689999
Q ss_pred EEEeCcHHHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 040106 171 YVQFREEEQAAAALHALQGRFYSGRPIIVEFSPVT 205 (324)
Q Consensus 171 yV~F~s~edA~~Ai~~LnGR~f~GR~I~vefs~v~ 205 (324)
||+|.+.++|.+|+..|||..++|++|.|.|+...
T Consensus 71 fV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 105 (115)
T 2cpx_A 71 FITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNK 105 (115)
T ss_dssp EEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCC
T ss_pred EEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCC
Confidence 99999999999999999999999999999998653
No 135
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=5.7e-12 Score=101.59 Aligned_cols=76 Identities=18% Similarity=0.242 Sum_probs=64.4
Q ss_pred CCCCe-eEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhcc-CCeeEEEEeeCCCCCceeEEEEEeCc
Q 040106 99 TISPT-LLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKF-GEIECLNVCDNLADHMIGNVYVQFRE 176 (324)
Q Consensus 99 ~~S~t-LlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kf-G~I~~V~V~~n~~~~~~G~vyV~F~s 176 (324)
.++.| |.|.||-..-+ + +++..+|++.|++| |+|.+|. .|++||+|.+
T Consensus 6 ~p~~T~lYV~NL~~~~~--------------~-------~~lk~~L~~lF~~yGG~Vl~Vt---------gG~AfV~F~~ 55 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKD--------------G-------KSVSNRLRRLSDNCGGKVLSIT---------GCSAILRFIN 55 (96)
T ss_dssp CCSSEEEEEESCCTTSC--------------H-------HHHHHHHHHHHHTTTCCEEECC---------TTCEEEEESS
T ss_pred CCcceEEEEeCCCCcCC--------------H-------HHHHHHHHHHHHHcCCeeEEEe---------cCEEEEEECC
Confidence 35778 66999977532 3 44558899999999 5999992 2999999999
Q ss_pred HHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 177 EEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
.++|.+|++.|||..+.||+|.|.|++.
T Consensus 56 ~esA~~A~~~l~G~~l~gr~i~v~~A~~ 83 (96)
T 2diu_A 56 QDSAERAQKRMENEDVFGNRIIVSFTPK 83 (96)
T ss_dssp HHHHHHHHHHHTTCCSSSSCCEEESSCC
T ss_pred HHHHHHHHHHhcCCccCCceEEEEecCC
Confidence 9999999999999999999999999865
No 136
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.30 E-value=3.8e-12 Score=100.03 Aligned_cols=61 Identities=23% Similarity=0.421 Sum_probs=57.0
Q ss_pred HHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHHHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 040106 141 EDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQAAAALHALQGRFYSGRPIIVEFSPVT 205 (324)
Q Consensus 141 eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~edA~~Ai~~LnGR~f~GR~I~vefs~v~ 205 (324)
++|.+.|++||+|.+|.|+.+ .+|++||+|.+.++|.+|++.|||..++|++|.|.++...
T Consensus 15 ~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 15 GELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp HHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred HHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 689999999999999999887 6899999999999999999999999999999999998543
No 137
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.30 E-value=8.7e-12 Score=108.61 Aligned_cols=81 Identities=12% Similarity=0.200 Sum_probs=70.4
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCcH
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFREE 177 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s~ 177 (324)
..+.+|+|.||-... + ++||++.|++||.|+.|.|+.+. ++.++|++||+|.+.
T Consensus 123 ~~~~~l~v~nlp~~~--------------t-----------~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~ 177 (216)
T 2qfj_A 123 RAFNRIYVASVHQDL--------------S-----------DDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKA 177 (216)
T ss_dssp TTSCEEEEECCCTTC--------------C-----------HHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCCcEEEEeCCCCcC--------------C-----------HHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCH
Confidence 356799999986532 1 27899999999999999998874 567899999999999
Q ss_pred HHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 178 EQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 178 edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
++|.+|+..|||..|+|++|.|.|+..
T Consensus 178 ~~A~~A~~~l~g~~~~g~~i~V~~a~~ 204 (216)
T 2qfj_A 178 QSSQDAVSSMNLFDLGGQYLRVGKAVT 204 (216)
T ss_dssp HHHHHHHHHHTTCBCSSSBCEEEECSS
T ss_pred HHHHHHHHHccCCEeCCcEEEEEEecC
Confidence 999999999999999999999999754
No 138
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.30 E-value=1.1e-11 Score=104.37 Aligned_cols=80 Identities=21% Similarity=0.349 Sum_probs=69.3
Q ss_pred CCCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeC
Q 040106 96 NRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFR 175 (324)
Q Consensus 96 ~~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~ 175 (324)
..+..+.+|+|.||-.+-. + ++|++.|++||.|.+|.|+.+ ++|++||+|.
T Consensus 68 ~~~~~~~~l~V~nl~~~~t--------------~-----------~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~ 118 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGN--------------K-----------TELERAFGYYGPLRSVWVARN----PPGFAFVEFE 118 (150)
T ss_dssp SSSTTSCEEEEESCCSCCS--------------C-----------HHHHHHHHHHSCEEEEEECSS----SCSEEEEEES
T ss_pred cCCCCCCEEEEeCCCCCCC--------------H-----------HHHHHHHHhhCCEEEEEEeeC----CCcEEEEEEC
Confidence 3445678999999965422 1 689999999999999999876 5899999999
Q ss_pred cHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 176 EEEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 176 s~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
+.++|.+|+..|||..++|++|.|.++..
T Consensus 119 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 119 DPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp SHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred CHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 99999999999999999999999999754
No 139
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.30 E-value=2.5e-12 Score=106.48 Aligned_cols=80 Identities=23% Similarity=0.345 Sum_probs=69.6
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeE--EEEeeCC-CCCceeEEEEEeC
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIEC--LNVCDNL-ADHMIGNVYVQFR 175 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~--V~V~~n~-~~~~~G~vyV~F~ 175 (324)
..+.+|+|.||-..-. + ++|++.|++||.|.. |.|+.+. ++..+||+||+|.
T Consensus 21 ~~~~~lfV~nL~~~~t--------------e-----------~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~ 75 (131)
T 2m2b_A 21 NANDTIILRNLNPHST--------------M-----------DSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLS 75 (131)
T ss_dssp CCCCEEEECSCCTTCC--------------S-----------HHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECC
T ss_pred CCCCEEEEeCCCCCCC--------------H-----------HHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEEC
Confidence 4567999999866432 1 689999999999976 9998886 6779999999999
Q ss_pred cHHHHHHHHHHhcCC----eeCCeEEEEEeecC
Q 040106 176 EEEQAAAALHALQGR----FYSGRPIIVEFSPV 204 (324)
Q Consensus 176 s~edA~~Ai~~LnGR----~f~GR~I~vefs~v 204 (324)
+. +|.+|+..|||. .++|++|.|.++..
T Consensus 76 ~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~ 107 (131)
T 2m2b_A 76 TI-EAAQLLQILQALHPPLTIDGKTINVEFAKG 107 (131)
T ss_dssp HH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCC
T ss_pred CH-HHHHHHHHhcCCCCCccCCCEEEEEEECCC
Confidence 99 999999999999 99999999999854
No 140
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.29 E-value=1.1e-11 Score=106.60 Aligned_cols=82 Identities=16% Similarity=0.342 Sum_probs=71.3
Q ss_pred CCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCc
Q 040106 98 PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFRE 176 (324)
Q Consensus 98 P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s 176 (324)
+..+.+|+|.||-..- + .++|.+.|++||.|..|.|..+. ++..+|++||+|.+
T Consensus 111 ~~~~~~l~v~nl~~~~--------------~-----------~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~ 165 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYL--------------N-----------DDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVD 165 (198)
T ss_dssp SCCCCEEEEECCCTTC--------------C-----------HHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESS
T ss_pred CCCCCEEEEeCCCCCC--------------C-----------HHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECC
Confidence 3567889999886532 1 26899999999999999998885 67789999999999
Q ss_pred HHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 177 EEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
.++|.+|+..|||..|+|++|.|.++..
T Consensus 166 ~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 193 (198)
T 2yh0_A 166 INVTDQAIAGLNGMQLGDKKLLVQRASV 193 (198)
T ss_dssp SSHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred HHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 9999999999999999999999999854
No 141
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.29 E-value=2.9e-12 Score=108.46 Aligned_cols=85 Identities=18% Similarity=0.083 Sum_probs=73.3
Q ss_pred CCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCC---eeEEEEeeCCCCCceeEEEEE
Q 040106 97 RPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGE---IECLNVCDNLADHMIGNVYVQ 173 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~---I~~V~V~~n~~~~~~G~vyV~ 173 (324)
.+..+.+|+|.||-.+.. ++||++.|++||. |.+|.|+.+..+.++|++||+
T Consensus 40 ~~~~~~~lfVgnLp~~~t-------------------------e~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~ 94 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCS-------------------------VEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE 94 (136)
T ss_dssp SCCTTCEEEEESCCTTCC-------------------------HHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCC-------------------------HHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEE
Confidence 345677899999876432 2789999999999 899999988778899999999
Q ss_pred eCcHHHHHHHHHHhcCCeeCCeEEEEEeecCCCc
Q 040106 174 FREEEQAAAALHALQGRFYSGRPIIVEFSPVTDF 207 (324)
Q Consensus 174 F~s~edA~~Ai~~LnGR~f~GR~I~vefs~v~~f 207 (324)
|.+.++|.+|++ |||..++||+|.|.++...+.
T Consensus 95 F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~~e~ 127 (136)
T 2hgl_A 95 LGSEDDVKMALK-KDRESMGHRYIEVFKSHRTEM 127 (136)
T ss_dssp CSSHHHHHHHHT-TTEEESSSSEEEEEECCHHHH
T ss_pred ECCHHHHHHHHh-cCCCEECCEEEEEEECChHHH
Confidence 999999999999 999999999999999865443
No 142
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.29 E-value=2.1e-11 Score=101.33 Aligned_cols=143 Identities=17% Similarity=0.190 Sum_probs=93.9
Q ss_pred hhhhccCcceeEeeccCCCCCCCCCCCchhhhhhccccchHHHHHHHHhCCCCCCcccccccccccccCCCcCCCCCCCC
Q 040106 19 RFLREGKREEVCVWIDKLSEIPFPSQDKDSAVKFAGRGLAMAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRP 98 (324)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~ma~~l~~~~gte~d~vnC~Fy~K~GACRhGd~CSr~H~~P 98 (324)
-|-.-|.-.++.+-.++.+. .+.-.|+....+-..+..+|..+.|+..+......-+. .....+
T Consensus 22 ~f~~~G~i~~v~~~~~~~~~-----~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~-----------~~~~~~ 85 (167)
T 1fxl_A 22 LFGSIGEIESCKLVRDKITG-----QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA-----------RPSSAS 85 (167)
T ss_dssp HHHTTSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC-----------CCCCGG
T ss_pred HHHhcCCeEEEEEEeCCCCC-----cceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEec-----------CCCccc
Confidence 34444665666655544331 22233333333333445566667776665422111000 011122
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCcH
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFREE 177 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s~ 177 (324)
..+.+|.|.||-... + .++|.+.|++||.|..|.|+.+. ++.++|++||+|.+.
T Consensus 86 ~~~~~l~v~nl~~~~--------------t-----------~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 140 (167)
T 1fxl_A 86 IRDANLYVSGLPKTM--------------T-----------QKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 140 (167)
T ss_dssp GTTCEEEEESCCTTC--------------C-----------HHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCCCcEEECCCCCcC--------------C-----------HHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCH
Confidence 456789999986532 1 26899999999999999998775 566899999999999
Q ss_pred HHHHHHHHHhcCCeeCCeE--EEEEee
Q 040106 178 EQAAAALHALQGRFYSGRP--IIVEFS 202 (324)
Q Consensus 178 edA~~Ai~~LnGR~f~GR~--I~vefs 202 (324)
++|.+|++.|||..|+|+. |.|.|+
T Consensus 141 ~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 141 IEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHHhcCCccCCCccceEEEeC
Confidence 9999999999999999975 888875
No 143
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.3e-11 Score=95.81 Aligned_cols=79 Identities=22% Similarity=0.257 Sum_probs=66.3
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEE-EEeeCCCCCceeEEEEEeCcH
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECL-NVCDNLADHMIGNVYVQFREE 177 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V-~V~~n~~~~~~G~vyV~F~s~ 177 (324)
..+.+|+|.||-.+- + .++|++.|++||+|.+| .|+.+. ..|.+||+|.+.
T Consensus 13 ~~~~~l~V~nlp~~~--------------t-----------~~~l~~~F~~~G~v~~~~~i~~~~---~~~~afV~f~~~ 64 (96)
T 2e44_A 13 QRIRKLQIRNIPPHL--------------Q-----------WEVLDSLLVQYGVVESCEQVNTDS---ETAVVNVTYSSK 64 (96)
T ss_dssp CSCCCEEEEEECSSS--------------C-----------HHHHHHHHHHHSCEEEEEEECCSS---SSEEEEEEESSH
T ss_pred CCCCEEEEEcCCCCC--------------C-----------HHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEECCH
Confidence 347899999995532 1 26899999999999999 577653 345699999999
Q ss_pred HHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 040106 178 EQAAAALHALQGRFYSGRPIIVEFSPVT 205 (324)
Q Consensus 178 edA~~Ai~~LnGR~f~GR~I~vefs~v~ 205 (324)
++|.+|+..|||..++|++|.|.++...
T Consensus 65 ~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 65 DQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp HHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred HHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 9999999999999999999999998754
No 144
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.29 E-value=1e-11 Score=103.77 Aligned_cols=82 Identities=15% Similarity=0.286 Sum_probs=71.0
Q ss_pred CCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCcHH
Q 040106 100 ISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFREEE 178 (324)
Q Consensus 100 ~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s~e 178 (324)
++.+|+|.||-.+-. +++|++.|++||+|.+|.|..+. ++..+|++||+|.+.+
T Consensus 2 ~~~~l~v~nlp~~~~-------------------------~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 56 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMT-------------------------DRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEM 56 (168)
T ss_dssp CCSEEEEECCCTTCC-------------------------HHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHH
T ss_pred CccEEEEeCCCCCCC-------------------------HHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHH
Confidence 578999999865422 26899999999999999998774 5668999999999999
Q ss_pred HHHHHHHHhcCCeeCCeEEEEEeecCCC
Q 040106 179 QAAAALHALQGRFYSGRPIIVEFSPVTD 206 (324)
Q Consensus 179 dA~~Ai~~LnGR~f~GR~I~vefs~v~~ 206 (324)
+|.+|++.|||..+.|++|.|.++....
T Consensus 57 ~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 84 (168)
T 1b7f_A 57 DSQRAIKVLNGITVRNKRLKVSYARPGG 84 (168)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCCCS
T ss_pred HHHHHHHhcCCCEeCCcEEEEEecCCCc
Confidence 9999999999999999999999986543
No 145
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.29 E-value=2e-12 Score=103.44 Aligned_cols=87 Identities=13% Similarity=0.047 Sum_probs=73.8
Q ss_pred CCCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCC---eeEEEEeeCCCCCceeEEEE
Q 040106 96 NRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGE---IECLNVCDNLADHMIGNVYV 172 (324)
Q Consensus 96 ~~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~---I~~V~V~~n~~~~~~G~vyV 172 (324)
..+....+|+|.||-.+.. + +||.+.|+.||. |..|.|+.+..+..+|++||
T Consensus 6 ~~~~~~~~l~V~nLp~~~t--------------e-----------~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV 60 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCT--------------M-----------EDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALI 60 (107)
T ss_dssp CCCSSCCEEEEECCCSSCC--------------S-----------HHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEE
T ss_pred CCCCCccEEEEeCCCCCCC--------------H-----------HHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEE
Confidence 3455778899999976432 1 689999999888 99999998877789999999
Q ss_pred EeCcHHHHHHHHHHhcCCeeCCeEEEEEeecCCCch
Q 040106 173 QFREEEQAAAALHALQGRFYSGRPIIVEFSPVTDFR 208 (324)
Q Consensus 173 ~F~s~edA~~Ai~~LnGR~f~GR~I~vefs~v~~f~ 208 (324)
+|.+.++|.+|+. |||..++||.|.|.++...+..
T Consensus 61 ~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~~~~~ 95 (107)
T 2lmi_A 61 EMESEQDVQKALE-KHRMYMGQRYVEVYEINNEDVD 95 (107)
T ss_dssp EBSSHHHHHHHHT-TTTCCSSSSCCCCEECCHHHHH
T ss_pred EECCHHHHHHHHH-hCcceeCCeEEEEEECCHHHHH
Confidence 9999999999999 9999999999999998655443
No 146
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=2e-11 Score=95.70 Aligned_cols=74 Identities=26% Similarity=0.416 Sum_probs=64.6
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhcc--CCeeEEEEeeCCCCCceeEEEEEeCc
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKF--GEIECLNVCDNLADHMIGNVYVQFRE 176 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kf--G~I~~V~V~~n~~~~~~G~vyV~F~s 176 (324)
..+.+|+|.||-.+-. + ++|++.|++| |.|..|.++ +|++||+|.+
T Consensus 13 ~~~~~l~V~nLp~~~t--------------~-----------~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~ 60 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTS--------------E-----------EMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSN 60 (99)
T ss_dssp SCCCEEEEESCCTTCC--------------H-----------HHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESS
T ss_pred CCcCEEEEeCCCCCCC--------------H-----------HHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCC
Confidence 4678999999865421 2 6899999999 999999874 6899999999
Q ss_pred HHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 177 EEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
.++|.+|+..|||..|+|++|.|.++..
T Consensus 61 ~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 61 REDAVEAMKALNGKVLDGSPIEVTLAKP 88 (99)
T ss_dssp HHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred HHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 9999999999999999999999999854
No 147
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.28 E-value=1.4e-12 Score=100.34 Aligned_cols=66 Identities=23% Similarity=0.303 Sum_probs=56.9
Q ss_pred HHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCcHHHHHHHHHHhcCCeeCCeEEEEEeecCCCc
Q 040106 141 EDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFREEEQAAAALHALQGRFYSGRPIIVEFSPVTDF 207 (324)
Q Consensus 141 eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s~edA~~Ai~~LnGR~f~GR~I~vefs~v~~f 207 (324)
++|.+.|++||+|.+|.|+.+. ++..+|++||+|.+.+ |.+|+..|||..++|++|.|.++.....
T Consensus 16 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~~ 82 (90)
T 2ki2_A 16 EQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKKS 82 (90)
T ss_dssp HHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-----
T ss_pred HHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 6889999999999999998875 4678999999999999 9999999999999999999999865443
No 148
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.28 E-value=2.9e-12 Score=107.34 Aligned_cols=84 Identities=18% Similarity=0.310 Sum_probs=72.0
Q ss_pred CCCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEe
Q 040106 96 NRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQF 174 (324)
Q Consensus 96 ~~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F 174 (324)
..+..+.+|+|.||-..- .++||.+.|++||+|..|.|+.+. ++..+|++||+|
T Consensus 42 ~~~~~~~~l~V~nLp~~~-------------------------te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F 96 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRT-------------------------SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRF 96 (135)
T ss_dssp SSGGGCCCEEEECCCSSC-------------------------HHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEEC
T ss_pred CCCCCCCEEEEeCCCCCC-------------------------CHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEE
Confidence 344567899999985431 137899999999999999998774 567899999999
Q ss_pred CcHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 175 REEEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 175 ~s~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
.+.++|.+|+..|||..++|++|.|.++..
T Consensus 97 ~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 126 (135)
T 2lea_A 97 HDKRDAEDAMDAMDGAVLDGRELRVQMARY 126 (135)
T ss_dssp SCHHHHHHHHTTTTTCCSSSSCCEEEECCC
T ss_pred CCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 999999999999999999999999999854
No 149
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.28 E-value=5.1e-12 Score=98.90 Aligned_cols=75 Identities=21% Similarity=0.346 Sum_probs=65.0
Q ss_pred CCCCeeEeccccC-CCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcH
Q 040106 99 TISPTLLLSNMYQ-RPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREE 177 (324)
Q Consensus 99 ~~S~tLlL~NMy~-~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~ 177 (324)
..+.+|+|.||-. ... +++|.+.|++||+|.+|.|. +|++||+|.+.
T Consensus 8 ~~~~~l~V~nlp~~~~t-------------------------~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~ 55 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVS-------------------------KEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNP 55 (96)
T ss_dssp -CCEEEEEESSTTSCCC-------------------------HHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCH
T ss_pred CCCCEEEEeCCCcccCC-------------------------HHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCH
Confidence 4678999999864 321 26899999999999999994 78999999999
Q ss_pred HHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 040106 178 EQAAAALHALQGRFYSGRPIIVEFSPVT 205 (324)
Q Consensus 178 edA~~Ai~~LnGR~f~GR~I~vefs~v~ 205 (324)
++|.+|+..|||..+.|++|.|+++...
T Consensus 56 ~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 56 QSVRDAIECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp HHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred HHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence 9999999999999999999999998543
No 150
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.28 E-value=3.5e-11 Score=110.06 Aligned_cols=152 Identities=13% Similarity=0.067 Sum_probs=102.7
Q ss_pred hhhhccCcceeEeeccCCCCCCCCCCCchhhhhhccccchHHHHHHHHhCCCCCC--cccccccccccccCCCcCCCCCC
Q 040106 19 RFLREGKREEVCVWIDKLSEIPFPSQDKDSAVKFAGRGLAMAEHLASIFGTEKDR--VNCPFYFKIGACRHGDRCSRLHN 96 (324)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~ma~~l~~~~gte~d~--vnC~Fy~K~GACRhGd~CSr~H~ 96 (324)
-|-.-|.-..+.|..|+.+- .+.-.|+....+--.+..+|..+.|+..+. +.+.+.... ....
T Consensus 115 ~f~~~G~i~~~~i~~~~~~g-----~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~----------~~~~ 179 (284)
T 3smz_A 115 LVRPFGSLERCFLVYSERTG-----QSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAG----------QLTP 179 (284)
T ss_dssp HHGGGSCEEEEEEEECTTTC-----CEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGG----------GCCT
T ss_pred HHHhcCCeeEEEEEeeCCCC-----ccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC----------CCCc
Confidence 34445665666655444331 122223322233334555676777877664 333222111 1112
Q ss_pred CCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCc
Q 040106 97 RPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRE 176 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s 176 (324)
....+.+|+|.||-..-. + ++||.+.|++||.|..|.|+.+..+.++|++||+|.+
T Consensus 180 ~~~~~~~l~v~nlp~~~~-------------~-----------~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~ 235 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFN-------------D-----------VDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYET 235 (284)
T ss_dssp TTTSCSEEEEECCCTTCC-------------C-----------HHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSS
T ss_pred ccCCccEEEEecCCcccC-------------C-----------HHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCC
Confidence 234678999999865310 1 2689999999999999999998778899999999999
Q ss_pred HHHHHHHHHHhcCCeeCCeEEEEEeecCCCchh
Q 040106 177 EEQAAAALHALQGRFYSGRPIIVEFSPVTDFRE 209 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~GR~I~vefs~v~~f~e 209 (324)
.++|.+|+..|||..|+|++|.|.|+....-..
T Consensus 236 ~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 268 (284)
T 3smz_A 236 AEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGR 268 (284)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEECCSSSCHH
T ss_pred HHHHHHHHHHhCCCccCCeEEEEEEecCCCccc
Confidence 999999999999999999999999997655443
No 151
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=3e-11 Score=95.17 Aligned_cols=79 Identities=23% Similarity=0.318 Sum_probs=67.3
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCcH
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFREE 177 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s~ 177 (324)
..+.+|+|.||-..- + ++||.+.|++||+|..|.|+.+. ++..+|++||+|.+.
T Consensus 13 ~~~~~l~v~nlp~~~--------------t-----------~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 67 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKT--------------T-----------EQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEY 67 (103)
T ss_dssp CCCCCEEEESCCSSC--------------C-----------HHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSH
T ss_pred CCCCEEEEEcCCCcC--------------C-----------HHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCH
Confidence 467789999975432 1 26899999999999999998874 467899999999999
Q ss_pred HHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 178 EQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 178 edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
++|.+|+. +|..++|++|.|.++..
T Consensus 68 ~~a~~A~~--~~~~~~g~~l~v~~a~~ 92 (103)
T 2cqg_A 68 ETQVKVMS--QRHMIDGRWCDCKLPNS 92 (103)
T ss_dssp HHHHHHHH--SCEEETTEEEEEECCCT
T ss_pred HHHHHHHH--cCCeeCCeEEEEEecCC
Confidence 99999998 57899999999999854
No 152
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.28 E-value=1.8e-11 Score=101.68 Aligned_cols=64 Identities=13% Similarity=0.250 Sum_probs=59.3
Q ss_pred HHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 141 EDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 141 eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
++|.+.|++||+|.+|.|+.+..+..+|++||+|.+.++|.+|+..|||..+.|++|.|.++..
T Consensus 15 ~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 15 DILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp HHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred HHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 6899999999999999999887777899999999999999999999999999999999999754
No 153
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=8.6e-12 Score=99.09 Aligned_cols=81 Identities=21% Similarity=0.242 Sum_probs=67.9
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCC-eeEEEEe-eCC-CCCceeEEEEEeC
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGE-IECLNVC-DNL-ADHMIGNVYVQFR 175 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~-I~~V~V~-~n~-~~~~~G~vyV~F~ 175 (324)
..+.+|+|.||-..- + .++|.+.|++||. |.+|.|+ .+. ++..+|++||+|.
T Consensus 6 ~~~~~l~V~nLp~~~--------------t-----------~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~ 60 (109)
T 2dis_A 6 SGNCRLFIGGIPKMK--------------K-----------REEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYE 60 (109)
T ss_dssp CCSEEEEEECCCTTS--------------C-----------HHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEES
T ss_pred cCCCEEEEeCCCCcC--------------C-----------HHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEec
Confidence 456789999986532 1 2689999999999 9999997 443 4568999999999
Q ss_pred cHHHHHHHHHHhc--CCeeCCeEEEEEeecC
Q 040106 176 EEEQAAAALHALQ--GRFYSGRPIIVEFSPV 204 (324)
Q Consensus 176 s~edA~~Ai~~Ln--GR~f~GR~I~vefs~v 204 (324)
+.++|.+|++.|| +..++|++|.|+++..
T Consensus 61 ~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~ 91 (109)
T 2dis_A 61 SHRAAAMARRKLMPGRIQLWGHQIAVDWAEP 91 (109)
T ss_dssp SHHHHHHHHTTTTTCCSCBTTBCCEEEESCS
T ss_pred CHHHHHHHHHHhhCCCceecCCeEEEEEcCC
Confidence 9999999999996 5899999999999854
No 154
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.27 E-value=1.4e-11 Score=99.15 Aligned_cols=82 Identities=13% Similarity=0.143 Sum_probs=66.3
Q ss_pred CCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeC
Q 040106 97 RPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFR 175 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~ 175 (324)
.+..+.+|+|.||-..- + +++|.+.|++||+|.+|.|+.+. ++..+|++||+|.
T Consensus 21 ~~~~~~~lfV~nLp~~~--------------t-----------e~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~ 75 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQT--------------T-----------QEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 75 (109)
T ss_dssp -----CCEEEESCCTTC--------------C-----------HHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEES
T ss_pred cCCCCCEEEEeCCCCCC--------------C-----------HHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEEC
Confidence 34567889999885432 1 26899999999999999998875 4678999999999
Q ss_pred cHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 176 EEEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 176 s~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
+.++|.+|+..| |..++|+.|.|.++..
T Consensus 76 ~~~~A~~Ai~~~-~~~l~g~~l~V~~a~~ 103 (109)
T 2rs2_A 76 DQAGVDKVLAQS-RHELDSKTIDPKVAFP 103 (109)
T ss_dssp SHHHHHHHHHSS-CEEETTEEEEEEECCC
T ss_pred CHHHHHHHHHHC-CCcCCCEEEEEEEccC
Confidence 999999999987 5999999999999754
No 155
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.26 E-value=5.9e-12 Score=93.68 Aligned_cols=61 Identities=18% Similarity=0.235 Sum_probs=56.4
Q ss_pred HHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCcHHHHHHHHHHhcCCeeCCeEEEEEee
Q 040106 141 EDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFREEEQAAAALHALQGRFYSGRPIIVEFS 202 (324)
Q Consensus 141 eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s~edA~~Ai~~LnGR~f~GR~I~vefs 202 (324)
+||++.|++||+|.+|.|+.+. ++.++|++||+|.+.++|.+|+..|| ..++|++|.|.++
T Consensus 15 ~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 15 EGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp HHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred HHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 6899999999999999998875 46789999999999999999999999 9999999999875
No 156
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=1.5e-11 Score=99.10 Aligned_cols=79 Identities=15% Similarity=0.166 Sum_probs=68.1
Q ss_pred CCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCcHH
Q 040106 100 ISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFREEE 178 (324)
Q Consensus 100 ~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s~e 178 (324)
.+.+|+|.||-.+- + +++|++.|++||+|..|.|+.+. ++..+|++||+|.+.+
T Consensus 26 ~~~~l~V~nLp~~~--------------t-----------e~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~ 80 (116)
T 1x4b_A 26 QFRKLFIGGLSFET--------------T-----------EESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMA 80 (116)
T ss_dssp HHTEEEEECCTTCC--------------C-----------HHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHH
T ss_pred CCCEEEEeCCCCCC--------------C-----------HHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHH
Confidence 45789999885532 1 26899999999999999998874 4678999999999999
Q ss_pred HHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 179 QAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 179 dA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
+|.+|+.. ||..|+|++|.|.++..
T Consensus 81 ~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 81 EVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred HHHHHHHh-CCcEECCEEEEEEECCC
Confidence 99999998 99999999999999754
No 157
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.26 E-value=1.5e-11 Score=94.70 Aligned_cols=77 Identities=19% Similarity=0.377 Sum_probs=66.7
Q ss_pred CCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHHH
Q 040106 100 ISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQ 179 (324)
Q Consensus 100 ~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~ed 179 (324)
.+.+|+|.||-..- + ++||++.|++| +|.+|.|. ..+|++||+|.+.++
T Consensus 4 ~~~~l~V~nLp~~~--------------t-----------~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~ 52 (88)
T 1wg1_A 4 GSSGILVKNLPQDS--------------N-----------CQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQ 52 (88)
T ss_dssp CCCCEEEESCCSSC--------------C-----------HHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHH
T ss_pred CCCEEEEeCCCCCC--------------C-----------HHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHH
Confidence 56789999985432 1 26899999999 99999995 368999999999999
Q ss_pred HHHHHHHhcCCeeCCeEEEEEeecCCCc
Q 040106 180 AAAALHALQGRFYSGRPIIVEFSPVTDF 207 (324)
Q Consensus 180 A~~Ai~~LnGR~f~GR~I~vefs~v~~f 207 (324)
|.+|++.|||..++|++|.|++++...+
T Consensus 53 a~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 80 (88)
T 1wg1_A 53 AQNAIQMFHQYSFRGKDLIVQLQPTDAL 80 (88)
T ss_dssp HHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred HHHHHHHhCCCeECCcEEEEEEcCCCce
Confidence 9999999999999999999999977654
No 158
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.26 E-value=8.6e-12 Score=96.93 Aligned_cols=77 Identities=22% Similarity=0.294 Sum_probs=64.3
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHH
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEE 178 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~e 178 (324)
..+.+|+|.||-..- + ++||.+.|++||.|..| ...+..+|++||+|.+.+
T Consensus 14 ~~~~~l~V~nL~~~~--------------t-----------~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~ 64 (96)
T 1fjc_A 14 RAARTLLAKNLSFNI--------------T-----------EDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEA 64 (96)
T ss_dssp TGGGEEEEESCCSSC--------------C-----------HHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHH
T ss_pred CCCCEEEEeCCCCCC--------------C-----------HHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHH
Confidence 456789999885432 1 26899999999998777 334568999999999999
Q ss_pred HHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 179 QAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 179 dA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
+|.+|+..|||..++|++|.|.++..
T Consensus 65 ~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 65 DAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp HHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred HHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 99999999999999999999999854
No 159
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=1.3e-11 Score=95.45 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=64.3
Q ss_pred CCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCC-eeEEEEeeCCCCCceeEEEEEeCc
Q 040106 98 PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGE-IECLNVCDNLADHMIGNVYVQFRE 176 (324)
Q Consensus 98 P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~-I~~V~V~~n~~~~~~G~vyV~F~s 176 (324)
+..+.+|+|.||-.+-. ++||++.|++||. |..+.|. .+|++||+|.+
T Consensus 5 ~~~~~~l~V~nLp~~~t-------------------------~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~ 53 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVT-------------------------ADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPD 53 (93)
T ss_dssp CCCCCCEEEECCCTTCC-------------------------HHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSC
T ss_pred CCCCcEEEEeCCCCCCC-------------------------HHHHHHHHHHcCCceEEEEEc------CCCEEEEEECC
Confidence 45678999999865421 2689999999999 6666663 47999999999
Q ss_pred HHHHHHHHHHhcC-CeeCCeEEEEEeecC
Q 040106 177 EEQAAAALHALQG-RFYSGRPIIVEFSPV 204 (324)
Q Consensus 177 ~edA~~Ai~~LnG-R~f~GR~I~vefs~v 204 (324)
.++|.+|++.||| ..++|++|.|+++..
T Consensus 54 ~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 54 QNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp HHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred HHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 9999999999999 999999999999854
No 160
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.24 E-value=3.4e-11 Score=100.73 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=54.6
Q ss_pred HHHHHHHhccCCeeEEEEeeCCCCCceeE-EEEEeCcHHHHHHHHHHhcCCeeCC--eEEEEEeecCCC
Q 040106 141 EDIFEELSKFGEIECLNVCDNLADHMIGN-VYVQFREEEQAAAALHALQGRFYSG--RPIIVEFSPVTD 206 (324)
Q Consensus 141 eDV~eEf~kfG~I~~V~V~~n~~~~~~G~-vyV~F~s~edA~~Ai~~LnGR~f~G--R~I~vefs~v~~ 206 (324)
++|++.|++||.|++|.|... .|+ +||+|.+.++|.+|+++|||..|.| ++|.|+|+....
T Consensus 40 ~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 40 DVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp HHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred HHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 689999999999999999763 386 9999999999999999999999987 699999986543
No 161
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.24 E-value=1.8e-11 Score=109.31 Aligned_cols=76 Identities=18% Similarity=0.316 Sum_probs=66.5
Q ss_pred CCCeeEecccc-CCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHH
Q 040106 100 ISPTLLLSNMY-QRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEE 178 (324)
Q Consensus 100 ~S~tLlL~NMy-~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~e 178 (324)
.+.||+|.||- ..- ++ ++|++.|++||.|.+|.|+.+ .+|++||+|.+.+
T Consensus 3 ~~~~l~V~nL~~~~~--------------~~-----------~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~ 53 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKM--------------NC-----------DRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGY 53 (205)
T ss_dssp CCSEEEEECCCTTTC--------------CH-----------HHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHH
T ss_pred CCCEEEEeCCCcccC--------------CH-----------HHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHH
Confidence 57899999986 322 22 689999999999999999875 3799999999999
Q ss_pred HHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 179 QAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 179 dA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
+|.+|++.|||..+.|++|.|.++..
T Consensus 54 ~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 54 AVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECSC
T ss_pred HHHHHHHHhCCCEECCceEEEEEccC
Confidence 99999999999999999999999853
No 162
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.24 E-value=2.9e-11 Score=106.11 Aligned_cols=63 Identities=19% Similarity=0.235 Sum_probs=56.2
Q ss_pred HHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHHHHHHHHHHhcCCeeCC--eEEEEEeecCCC
Q 040106 141 EDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQAAAALHALQGRFYSG--RPIIVEFSPVTD 206 (324)
Q Consensus 141 eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~edA~~Ai~~LnGR~f~G--R~I~vefs~v~~ 206 (324)
++|++.|++||+|++|.|.... .+|++||+|.+.++|.+|++.|||..|.| ++|.|+|+....
T Consensus 61 d~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 61 DVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp HHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred HHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 6899999999999999997543 57999999999999999999999999965 999999986543
No 163
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.24 E-value=1.7e-11 Score=102.33 Aligned_cols=80 Identities=18% Similarity=0.341 Sum_probs=66.7
Q ss_pred CCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEE--------EEeeCCCCCceeE
Q 040106 98 PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECL--------NVCDNLADHMIGN 169 (324)
Q Consensus 98 P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V--------~V~~n~~~~~~G~ 169 (324)
...+.+|+|.||-..-. +++|.+.|++||.|..+ .+.. ++..+|+
T Consensus 42 ~~~~~~l~V~nLp~~~t-------------------------e~~L~~~F~~~G~i~~~~~~~~~di~~~~--~g~~~g~ 94 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQ-------------------------EKDLKYIFGRYVDFSSETQRIMFDIRLMK--EGRMKGQ 94 (143)
T ss_dssp CSCCSEEEEEEECTTCC-------------------------HHHHHHHHGGGCCTTCHHHHHHCEEEEEE--ETTTEEE
T ss_pred CCCCCEEEEeCCCCCCC-------------------------HHHHHHHHHHhCCcccccccceeeEEecc--CCCcccE
Confidence 34678999999976422 26899999999999874 3332 4568999
Q ss_pred EEEEeCcHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 170 VYVQFREEEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 170 vyV~F~s~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
+||+|.+.++|.+|+..|||..|+|++|.|.|+..
T Consensus 95 afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 129 (143)
T 3egn_A 95 AFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 129 (143)
T ss_dssp EEEECSSHHHHHHHHHHHTTBEETTEECEEEECCC
T ss_pred EEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 99999999999999999999999999999999854
No 164
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.24 E-value=2.6e-11 Score=107.53 Aligned_cols=147 Identities=16% Similarity=0.181 Sum_probs=95.6
Q ss_pred hhhhhccCcceeEeeccCCCCCCCCCCCchhhhhhccccchHHHHHHHHhCCCCCCcccccccccccccCCCcCCCCCCC
Q 040106 18 KRFLREGKREEVCVWIDKLSEIPFPSQDKDSAVKFAGRGLAMAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNR 97 (324)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~ma~~l~~~~gte~d~vnC~Fy~K~GACRhGd~CSr~H~~ 97 (324)
.-|-.-|.-++|.|.-|+.+ -.+.-.||....+-..+..+|....|+..........+.. ......
T Consensus 34 ~~F~~~G~I~~v~i~~d~~t-----g~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~---------~~~~~~ 99 (213)
T 4f02_A 34 EKFSPAGPILSIRVCRDMIT-----RRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ---------RDPSLR 99 (213)
T ss_dssp HHHGGGSCEEEEEEEECTTT-----CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC---------CCTHHH
T ss_pred HHHHhhCCEEEEEEecccCC-----CCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc---------cccccc
Confidence 34555566666666555433 1233333333333334455666666665543211100000 000011
Q ss_pred CCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcH
Q 040106 98 PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREE 177 (324)
Q Consensus 98 P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~ 177 (324)
...+.+|+|.||-..- + +++|++.|++||.|+.|.|+.+. +..+|++||+|.+.
T Consensus 100 ~~~~~~l~v~nl~~~~--------------t-----------~~~l~~~F~~~G~i~~~~i~~d~-~~~~g~~fV~f~~~ 153 (213)
T 4f02_A 100 KSGVGNIFIKNLDKSI--------------D-----------NKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQ 153 (213)
T ss_dssp HHCTTEEEEESCCTTC--------------C-----------HHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESSH
T ss_pred ccccccceECCccccc--------------H-----------HHHHHHHHhhcCCeEEEEeeccC-CCCceEEEEEeCCH
Confidence 1245689999886532 1 26899999999999999998774 34799999999999
Q ss_pred HHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 178 EQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 178 edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
++|.+|++.|||..++|++|.|.++..
T Consensus 154 ~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 154 EAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred HHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 999999999999999999999999753
No 165
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.23 E-value=4.6e-11 Score=109.64 Aligned_cols=119 Identities=14% Similarity=0.166 Sum_probs=84.3
Q ss_pred cccchHHHHHHHHhCCCCCCc--ccccccccccccCCCcCCCCCCCCCCCCeeEeccccCC-CCCCCCCCCCCCCCCChh
Q 040106 54 GRGLAMAEHLASIFGTEKDRV--NCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQR-PDMITPGVDAQGQPIDPR 130 (324)
Q Consensus 54 ~~g~~ma~~l~~~~gte~d~v--nC~Fy~K~GACRhGd~CSr~H~~P~~S~tLlL~NMy~~-p~~~~~~~d~~~~eld~e 130 (324)
.+--.+..+|..+.|...+.. .+.+... ...-.+.......+.+|+|.||-.. -.
T Consensus 167 ~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~------~~~~~~~~~~~~~~~~l~v~nlp~~~~t---------------- 224 (292)
T 2ghp_A 167 TSKEDARYCVEKLNGLKIEGYTLVTKVSNP------LEKSKRTDSATLEGREIMIRNLSTELLD---------------- 224 (292)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCC------C---------CCTTTEEEEEEECTTTCC----------------
T ss_pred CCHHHHHHHHHHhCCCEeCCcEEEEEECCC------CcccccccccCCCCceEEEECCCcccCC----------------
Confidence 444455667777788777652 2211110 0000011123456789999998553 21
Q ss_pred HHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCC--CCceeEEEEEeCcHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 131 KIQEHFEDFYEDIFEELSKFGEIECLNVCDNLA--DHMIGNVYVQFREEEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 131 el~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~--~~~~G~vyV~F~s~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
.++|++.|++||.|..|.|+.+.. +.++|++||+|.+.++|.+|+ .|||..|+|++|.|.|+..
T Consensus 225 ---------~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~ 290 (292)
T 2ghp_A 225 ---------ENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADK 290 (292)
T ss_dssp ---------HHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCC
T ss_pred ---------HHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecC
Confidence 268999999999999999988765 778999999999999999999 9999999999999999854
No 166
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.23 E-value=1.7e-12 Score=101.99 Aligned_cols=80 Identities=23% Similarity=0.187 Sum_probs=65.3
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHH
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEE 178 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~e 178 (324)
..+.+|+|.||-.+-. ++||.+.|++||.|..+.|....++.++|++||+|.+.+
T Consensus 15 ~~~~~l~V~nLp~~~t-------------------------~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~ 69 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKS-------------------------VAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAE 69 (101)
T ss_dssp SCSEEEEEECCCTTSC-------------------------HHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHH
T ss_pred CCCCEEEEeCCCCCCC-------------------------HHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHH
Confidence 3567899999865321 268999999999998833333344568999999999999
Q ss_pred HHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 179 QAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 179 dA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
+|.+|++ |||..++|++|.|.++..
T Consensus 70 ~a~~A~~-l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 70 DLEKALE-LTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp HHHHHHH-GGGCCBTTBCCEEECCSC
T ss_pred HHHHHHh-cCCcEECCcEEEEEEcCC
Confidence 9999998 999999999999999854
No 167
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.22 E-value=1.4e-11 Score=112.16 Aligned_cols=80 Identities=19% Similarity=0.194 Sum_probs=69.0
Q ss_pred CCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccC--CeeEEEEeeCC-CCCceeEEEEEeCc
Q 040106 100 ISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFG--EIECLNVCDNL-ADHMIGNVYVQFRE 176 (324)
Q Consensus 100 ~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG--~I~~V~V~~n~-~~~~~G~vyV~F~s 176 (324)
.+.+|+|.||-.+-. ++||++.|++|| +|++|.|+.+. ++..+||+||+|.+
T Consensus 67 ~~~~lfVgnL~~~~t-------------------------e~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~ 121 (229)
T 3q2s_C 67 KRIALYIGNLTWWTT-------------------------DEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGS 121 (229)
T ss_dssp --CEEEEESCCTTCC-------------------------HHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESC
T ss_pred CccEEEEeCCCCCCC-------------------------HHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECC
Confidence 355899999865321 268999999999 99999998884 67799999999999
Q ss_pred HHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 177 EEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
.++|.+||+.|||..|+|++|.|.++..
T Consensus 122 ~~~a~~Ai~~lng~~~~Gr~l~V~~a~~ 149 (229)
T 3q2s_C 122 EASSKKLMDLLPKRELHGQNPVVTPVNK 149 (229)
T ss_dssp TTHHHHHHTTSTTSCBTTBCCEEEECCH
T ss_pred HHHHHHHHHHcCCCeECCEEeEEEECCC
Confidence 9999999999999999999999999854
No 168
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=5.7e-11 Score=93.23 Aligned_cols=81 Identities=20% Similarity=0.261 Sum_probs=65.8
Q ss_pred CCCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeC-CCCCceeEEEEEe
Q 040106 96 NRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDN-LADHMIGNVYVQF 174 (324)
Q Consensus 96 ~~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n-~~~~~~G~vyV~F 174 (324)
..+..+.+|+|.||-.+. ++ +||.+.|+.|+ .|.|+.+ .++..+|++||+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~--------------t~-----------~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f 61 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDT--------------TE-----------ETLKESFDGSV---RARIVTDRETGSSKGFGFVDF 61 (102)
T ss_dssp SSSCCCSSEEEECCCTTC--------------CH-----------HHHHHTSTTCS---EEEEEECSSSCSEEEEEEEEC
T ss_pred CCCCCCCEEEEeCCCCcc--------------CH-----------HHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEE
Confidence 445678899999986542 22 67888888774 5666655 3567899999999
Q ss_pred CcHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 175 REEEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 175 ~s~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
.+.++|.+|++.|||..|+|++|.|.++..
T Consensus 62 ~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 62 NSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 999999999999999999999999999854
No 169
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=8.7e-12 Score=103.85 Aligned_cols=87 Identities=16% Similarity=0.149 Sum_probs=72.9
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCe----eEEEEeeCCCCCceeEEEEEe
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEI----ECLNVCDNLADHMIGNVYVQF 174 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I----~~V~V~~n~~~~~~G~vyV~F 174 (324)
..+.+|+|.||-.+.. ++||++.|++||+| ..|.|+.+.++.++|++||+|
T Consensus 21 ~~~~~v~V~nLp~~~t-------------------------e~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F 75 (123)
T 2dha_A 21 ENQVIVRMRGLPFTAT-------------------------AEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLF 75 (123)
T ss_dssp CSCCEEEECSCCTTCC-------------------------HHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCC-------------------------HHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEE
Confidence 3567899999866432 27999999999986 699998887778999999999
Q ss_pred CcHHHHHHHHHHhcCCeeCCeEEEEEeecCCCchhhh
Q 040106 175 REEEQAAAALHALQGRFYSGRPIIVEFSPVTDFREAT 211 (324)
Q Consensus 175 ~s~edA~~Ai~~LnGR~f~GR~I~vefs~v~~f~ea~ 211 (324)
.+.++|.+|++. ||..++||.|.|..+....+..+.
T Consensus 76 ~~~~~A~~Al~~-~~~~l~gR~i~V~~a~~~e~~~~~ 111 (123)
T 2dha_A 76 ACEEYAQNALRK-HKDLLGKRYIELFRSTAAEVQQVL 111 (123)
T ss_dssp SSHHHHHHHHTT-TTEESSSCEECCEEECHHHHHHHH
T ss_pred CCHHHHHHHHHh-CCCeeCCeEEEEEECCHHHHHHHH
Confidence 999999999986 999999999999998766555443
No 170
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.21 E-value=5.9e-12 Score=107.05 Aligned_cols=85 Identities=16% Similarity=0.165 Sum_probs=70.5
Q ss_pred CCCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeC
Q 040106 96 NRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFR 175 (324)
Q Consensus 96 ~~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~ 175 (324)
..+..+.+|+|.||-.+.. ++||++.|++|| |++|.|+.+..+.++|++||+|.
T Consensus 41 ~~~~~~~~lfV~nLp~~~t-------------------------e~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~ 94 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKAT-------------------------ENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFA 94 (139)
T ss_dssp ----CCCCEECCSCCTTCC-------------------------HHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECS
T ss_pred CCCCCCCEEEEeCCCCCCC-------------------------HHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeC
Confidence 3456778999998866432 278999999999 77999988877789999999999
Q ss_pred cHHHHHHHHHHhcCCeeCCeEEEEEeecCCCc
Q 040106 176 EEEQAAAALHALQGRFYSGRPIIVEFSPVTDF 207 (324)
Q Consensus 176 s~edA~~Ai~~LnGR~f~GR~I~vefs~v~~f 207 (324)
+.++|++|+ .|||..++||.|.|..+.....
T Consensus 95 ~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 95 THEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp HHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred CHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 999999999 8999999999999999876544
No 171
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.21 E-value=6.8e-11 Score=104.78 Aligned_cols=81 Identities=21% Similarity=0.421 Sum_probs=69.9
Q ss_pred CCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCcHH
Q 040106 100 ISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFREEE 178 (324)
Q Consensus 100 ~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s~e 178 (324)
++.||.|.||-.+- + +++|++.|++||+|++|.|+.+. ++..+|++||+|.+.+
T Consensus 14 p~~tlfVgnLp~~~--------------t-----------e~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~ 68 (213)
T 4f02_A 14 PMASLYVGDLHPDV--------------T-----------EAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 68 (213)
T ss_dssp -CCEEEEESCCTTC--------------C-----------HHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CCcEEEEeCCCCCC--------------C-----------HHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHH
Confidence 56799999986532 1 27899999999999999998875 5678999999999999
Q ss_pred HHHHHHHHhcCCeeCCeEEEEEeecCC
Q 040106 179 QAAAALHALQGRFYSGRPIIVEFSPVT 205 (324)
Q Consensus 179 dA~~Ai~~LnGR~f~GR~I~vefs~v~ 205 (324)
+|.+|++.|||..+.|+.|.+.++...
T Consensus 69 ~A~~Ai~~~~~~~~~g~~i~~~~~~~~ 95 (213)
T 4f02_A 69 DAERALDTMNFDVIKGKPVRIMWSQRD 95 (213)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred HHHHHHHHhhhhhcCCccccccccccc
Confidence 999999999999999999999987543
No 172
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.20 E-value=2.6e-11 Score=101.48 Aligned_cols=79 Identities=11% Similarity=0.129 Sum_probs=68.3
Q ss_pred CCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCcHH
Q 040106 100 ISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFREEE 178 (324)
Q Consensus 100 ~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s~e 178 (324)
.+.+|+|.||-... ++ ++|.+.|++||+|..|.|+.+. ++.++|++||+|.+.+
T Consensus 86 ~~~~l~V~nlp~~~--------------t~-----------~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~ 140 (167)
T 2cjk_A 86 KTGKIFVGGIGPDV--------------RP-----------KEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSAD 140 (167)
T ss_dssp HCEEEEEEEECTTC--------------CH-----------HHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHH
T ss_pred CCCeEEECCCCCCC--------------CH-----------HHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHH
Confidence 46689999986532 12 6899999999999999998774 5678999999999999
Q ss_pred HHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 179 QAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 179 dA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
+|.+|++ |||..++|++|.|.++..
T Consensus 141 ~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 141 AVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp HHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred HHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 9999998 999999999999999854
No 173
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.82 E-value=1.8e-12 Score=104.71 Aligned_cols=82 Identities=22% Similarity=0.404 Sum_probs=69.3
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeE--------EEEeeC-CCCCceeE
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIEC--------LNVCDN-LADHMIGN 169 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~--------V~V~~n-~~~~~~G~ 169 (324)
..+.+|+|.||-..-. ++||.+.|++||.|.. |.|+.+ .++..+|+
T Consensus 5 ~~~~~l~V~nLp~~~t-------------------------~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~ 59 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVT-------------------------IESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGE 59 (116)
Confidence 3567888888854321 2689999999999999 888877 34668999
Q ss_pred EEEEeCcHHHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 040106 170 VYVQFREEEQAAAALHALQGRFYSGRPIIVEFSPVT 205 (324)
Q Consensus 170 vyV~F~s~edA~~Ai~~LnGR~f~GR~I~vefs~v~ 205 (324)
+||+|.+.++|.+|+..|||..|+|++|.|.++...
T Consensus 60 afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (116)
T 2lcw_A 60 ATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRR 95 (116)
Confidence 999999999999999999999999999999998553
No 174
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.18 E-value=8.8e-11 Score=100.71 Aligned_cols=81 Identities=10% Similarity=0.223 Sum_probs=67.7
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCcH
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFREE 177 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s~ 177 (324)
..+.+|+|.||-..- + +++|.+.|++||.|..|.|+.+. ++..+|++||+|.+.
T Consensus 102 ~~~~~l~V~nLp~~~--------------t-----------~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~ 156 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDT--------------E-----------EHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156 (196)
T ss_dssp -CCSEEEEECCTTTC--------------C-----------HHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCcceEEEeCCCCCC--------------C-----------HHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCH
Confidence 356789999985432 1 26899999999999999998875 567899999999999
Q ss_pred HHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 040106 178 EQAAAALHALQGRFYSGRPIIVEFSPVT 205 (324)
Q Consensus 178 edA~~Ai~~LnGR~f~GR~I~vefs~v~ 205 (324)
++|.+|+.. +|..|+|++|.|.++...
T Consensus 157 ~~A~~A~~~-~~~~~~G~~i~v~~a~~k 183 (196)
T 1l3k_A 157 DSVDKIVIQ-KYHTVNGHNCEVRKALSK 183 (196)
T ss_dssp HHHHHHHHC-SCCEETTEECEEEECC--
T ss_pred HHHHHHHHh-CCcEECCEEEEEEecCCh
Confidence 999999986 899999999999997543
No 175
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.18 E-value=1.4e-11 Score=91.32 Aligned_cols=61 Identities=20% Similarity=0.282 Sum_probs=55.0
Q ss_pred HHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCcHHHHHHHHHHhcCCeeCCeEEEEEee
Q 040106 141 EDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFREEEQAAAALHALQGRFYSGRPIIVEFS 202 (324)
Q Consensus 141 eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s~edA~~Ai~~LnGR~f~GR~I~vefs 202 (324)
++|.+.|++||+|.+|.|+.+. ++..+|++||+|.+.++|.+|++ ++|..++|++|.|.++
T Consensus 14 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 14 EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp HHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred HHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 6899999999999999998774 46689999999999999999998 4999999999999874
No 176
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.17 E-value=2.9e-11 Score=95.10 Aligned_cols=77 Identities=12% Similarity=0.239 Sum_probs=67.1
Q ss_pred CCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHHH
Q 040106 100 ISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQ 179 (324)
Q Consensus 100 ~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~ed 179 (324)
.+.+|+|.||-.+- + +++|.+.|++||.|.+|.|+.+.++..+|++||+|.+.++
T Consensus 8 ~~~~l~V~nLp~~~--------------t-----------~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~ 62 (102)
T 2xs2_A 8 MPNTVFVGGIDVRM--------------D-----------ETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVD 62 (102)
T ss_dssp EEEEEEEECCCTTC--------------C-----------HHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCC
T ss_pred CCCEEEEeCCCCCC--------------C-----------HHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHH
Confidence 46789999886532 1 2689999999999999999988777789999999999999
Q ss_pred HHHHHHHhcCCeeCCeEEEEEeec
Q 040106 180 AAAALHALQGRFYSGRPIIVEFSP 203 (324)
Q Consensus 180 A~~Ai~~LnGR~f~GR~I~vefs~ 203 (324)
|.+|+. ||..++|+.|.|.++.
T Consensus 63 a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 63 VQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp HHHHTT--CCCEETTEECEEEEEE
T ss_pred HHHHHh--CCCeECCEEEEEEECC
Confidence 999999 9999999999998874
No 177
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.17 E-value=1.2e-10 Score=106.40 Aligned_cols=83 Identities=22% Similarity=0.441 Sum_probs=69.5
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHH
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEE 178 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~e 178 (324)
..+.+|+|.||-.+- +++ +|.+.|.+.|++||.|.+|.|+. .+..+|++||+|.+.+
T Consensus 7 ~~~~~l~V~nlp~~~--------------~~~-------~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~ 63 (282)
T 3pgw_A 7 RPNHTIYINNLNEKI--------------KKD-------ELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVS 63 (282)
T ss_pred CCCCEEEEeCCCCCC--------------CHH-------HHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHH
Confidence 468899999996542 232 33345778999999999999986 3457999999999999
Q ss_pred HHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 179 QAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 179 dA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
+|.+|++.|||..+.|++|.|.|+..
T Consensus 64 ~a~~A~~~l~g~~~~g~~l~v~~a~~ 89 (282)
T 3pgw_A 64 SATNALRSMQGFPFYDKPMRIQYAKT 89 (282)
T ss_pred HHHHHHHHhcCCeeCCcEEEEEEecc
Confidence 99999999999999999999999844
No 178
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.16 E-value=5.6e-11 Score=100.58 Aligned_cols=78 Identities=22% Similarity=0.292 Sum_probs=65.7
Q ss_pred CCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcH
Q 040106 98 PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREE 177 (324)
Q Consensus 98 P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~ 177 (324)
+..+.+|+|.||-... ++ ++|.+.|++||.|..+ ...+..+|++||+|.+.
T Consensus 96 ~~~~~~l~v~nlp~~~--------------t~-----------~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~ 146 (175)
T 1fje_B 96 VRAARTLLAKNLSFNI--------------TE-----------DELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSE 146 (175)
T ss_dssp TGGGGEEEEESCCSSC--------------CH-----------HHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSH
T ss_pred cccCCEEEEeCCCCCC--------------CH-----------HHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCH
Confidence 3467799999986532 12 6899999999998776 44556899999999999
Q ss_pred HHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 178 EQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 178 edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
++|.+|+..|||..++|++|.|.|+..
T Consensus 147 ~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 147 ADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp HHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred HHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 999999999999999999999999854
No 179
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=8.8e-11 Score=91.30 Aligned_cols=78 Identities=15% Similarity=0.153 Sum_probs=62.8
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHH
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEE 178 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~e 178 (324)
..+.+|+|.||-.+-. ++||.+.|++||+|.+| +....++. ++||+|.+.+
T Consensus 6 ~~~~~l~V~nl~~~~t-------------------------~~~l~~~F~~~G~v~~v-~~~~~~g~---~afV~f~~~~ 56 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVD-------------------------SAQLSEYFLAFGPVASV-VMDKDKGV---FAIVEMGDVG 56 (94)
T ss_dssp TTCCEEEEECCCTTCC-------------------------HHHHHHHGGGTSCEEEE-EECSSSCC---EEEEEESSHH
T ss_pred CCCCEEEEECCCCCCC-------------------------HHHHHHHHHhcCCeEEE-EEcCCCCc---EEEEEECCHH
Confidence 4567999999865321 27899999999999998 43332222 9999999999
Q ss_pred HHHHHHHHhcCCeeCCeEEEEEeecCCC
Q 040106 179 QAAAALHALQGRFYSGRPIIVEFSPVTD 206 (324)
Q Consensus 179 dA~~Ai~~LnGR~f~GR~I~vefs~v~~ 206 (324)
+|.+|+. |||..|+|++|.|.++....
T Consensus 57 ~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 57 AREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp HHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred HHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 9999999 99999999999999875433
No 180
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.15 E-value=1.2e-10 Score=106.42 Aligned_cols=59 Identities=22% Similarity=0.253 Sum_probs=55.0
Q ss_pred HHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHHHHHHHHHHhcCCeeC-CeEEEEEeec
Q 040106 141 EDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQAAAALHALQGRFYS-GRPIIVEFSP 203 (324)
Q Consensus 141 eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~edA~~Ai~~LnGR~f~-GR~I~vefs~ 203 (324)
++|++.|++||.|.+|.|..+. +|++||+|.+.++|.+|+..|||..|+ |++|.|+|+.
T Consensus 222 ~~l~~~F~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 222 LMLSMLFNQFPGFKEVRLVPGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred HHHHHHHHhcCCeEEEEEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 7899999999999999998653 699999999999999999999999999 9999999974
No 181
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.14 E-value=8.6e-11 Score=102.24 Aligned_cols=82 Identities=20% Similarity=0.310 Sum_probs=68.3
Q ss_pred CCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCcHH
Q 040106 100 ISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFREEE 178 (324)
Q Consensus 100 ~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s~e 178 (324)
.+.+|+|.||-..-. +++|++.|++||+|.+|.|+.+. ++..+|++||+|.+.+
T Consensus 27 ~~~~l~V~nLp~~~t-------------------------~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~ 81 (216)
T 2qfj_A 27 IMSRVYVGSIYYELG-------------------------EDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPE 81 (216)
T ss_dssp HHTEEEEECCCTTCC-------------------------HHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHH
T ss_pred cCCEEEEECCCCCCC-------------------------HHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHH
Confidence 467999999866422 26899999999999999998774 5668999999999999
Q ss_pred HHHHHHHHhcCCeeCCeEEEEEeecCCC
Q 040106 179 QAAAALHALQGRFYSGRPIIVEFSPVTD 206 (324)
Q Consensus 179 dA~~Ai~~LnGR~f~GR~I~vefs~v~~ 206 (324)
+|.+|+..|||..+.|++|.|.++....
T Consensus 82 ~A~~A~~~l~~~~~~g~~l~v~~~~~~~ 109 (216)
T 2qfj_A 82 AAQLALEQMNSVMLGGRNIKVGRPSNIG 109 (216)
T ss_dssp HHHHHHHHHSSCCCC-CCCEEECCSCCG
T ss_pred HHHHHHHHccCCeeCCeeEEEecCCCcc
Confidence 9999999999999999999998875443
No 182
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.14 E-value=2.6e-11 Score=101.62 Aligned_cols=82 Identities=22% Similarity=0.155 Sum_probs=69.2
Q ss_pred CCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCee--EEEEeeCCCCCceeEEEEEe
Q 040106 97 RPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIE--CLNVCDNLADHMIGNVYVQF 174 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~--~V~V~~n~~~~~~G~vyV~F 174 (324)
.|..+.+|+|.||-.+.. ++||++.|++| .|+ +|.|+.+..+.++||+||+|
T Consensus 38 ~~~~~~~lfVgnLp~~~t-------------------------e~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F 91 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCT-------------------------KEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQF 91 (126)
T ss_dssp CSSSCCEEEEECCCTTCC-------------------------HHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCC-------------------------HHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEE
Confidence 445678999999876532 27899999999 576 99998887788999999999
Q ss_pred CcHHHHHHHHHHhcCCeeCCeEEEEEeecCC
Q 040106 175 REEEQAAAALHALQGRFYSGRPIIVEFSPVT 205 (324)
Q Consensus 175 ~s~edA~~Ai~~LnGR~f~GR~I~vefs~v~ 205 (324)
.+.++|.+|++ ++|..++||+|.|..+...
T Consensus 92 ~~~e~A~~Al~-~~~~~l~gR~I~V~~a~~~ 121 (126)
T 2hgm_A 92 ASQELAEKALG-KHKERIGHRYIEVFKSSQE 121 (126)
T ss_dssp SSTTHHHHHHT-TTTCCBTTBCCCCEEECHH
T ss_pred CCHHHHHHHHH-HCCCEECCEEEEEEECCHH
Confidence 99999999998 5789999999999887543
No 183
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.13 E-value=2e-10 Score=101.85 Aligned_cols=76 Identities=17% Similarity=0.289 Sum_probs=66.1
Q ss_pred CCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHHHH
Q 040106 101 SPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQA 180 (324)
Q Consensus 101 S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~edA 180 (324)
+.||+|.||-.... .++|.+.|++||+|..|.|+.+..+..+|+|||+|.+.++|
T Consensus 109 ~~~l~V~nLp~~~t-------------------------~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A 163 (193)
T 2voo_A 109 NRSVYIKGFPTDAT-------------------------LDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESA 163 (193)
T ss_dssp HTEEEEECCCTTCC-------------------------HHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHH
T ss_pred cCEEEecCCCCcCC-------------------------HHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHH
Confidence 47899999865322 27899999999999999999887777999999999999999
Q ss_pred HHHHHHhcCCeeCCeEEEEEee
Q 040106 181 AAALHALQGRFYSGRPIIVEFS 202 (324)
Q Consensus 181 ~~Ai~~LnGR~f~GR~I~vefs 202 (324)
.+|+..++. .|+|++|.|.+.
T Consensus 164 ~~A~~~~~~-~~~Gr~l~V~~~ 184 (193)
T 2voo_A 164 KKFVETPGQ-KYKETDLLILFK 184 (193)
T ss_dssp HHHHHCTTC-EETTEECEEEET
T ss_pred HHHHHhCCC-eECCEEEEEEEh
Confidence 999987765 899999999875
No 184
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.13 E-value=1e-10 Score=101.28 Aligned_cols=77 Identities=25% Similarity=0.201 Sum_probs=65.9
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccC-CeeEEEEeeCCCCCceeEEEEEeCcH
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFG-EIECLNVCDNLADHMIGNVYVQFREE 177 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG-~I~~V~V~~n~~~~~~G~vyV~F~s~ 177 (324)
.++.||+|.||-... + .++|.+.|++|| +|..|.|..+ .+|++||+|.+.
T Consensus 118 ~~~~~l~v~nl~~~~--------------~-----------~~~l~~~f~~~G~~v~~v~i~~~----~~g~afV~f~~~ 168 (198)
T 1qm9_A 118 PPSATLHLSNIPPSV--------------S-----------EEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSV 168 (198)
T ss_dssp CCCCEEEECCCCTTC--------------C-----------HHHHHHHHHHTTSCCCEEEESST----TSSCEEEECSSH
T ss_pred CCccEEEEeCCCCCC--------------C-----------HHHHHHHHHHcCCCceEEEEEeC----CCcEEEEEeCCH
Confidence 357889998885432 1 268999999999 9999999654 279999999999
Q ss_pred HHHHHHHHHhcCCeeC-CeEEEEEeecC
Q 040106 178 EQAAAALHALQGRFYS-GRPIIVEFSPV 204 (324)
Q Consensus 178 edA~~Ai~~LnGR~f~-GR~I~vefs~v 204 (324)
++|.+|+..|||..++ |++|.|.|+..
T Consensus 169 ~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 169 EEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp HHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred HHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 9999999999999999 99999999854
No 185
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.12 E-value=1.8e-10 Score=98.76 Aligned_cols=82 Identities=16% Similarity=0.210 Sum_probs=70.0
Q ss_pred CCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeC
Q 040106 97 RPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFR 175 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~ 175 (324)
.|..+.+|+|.||-.+-. ++||.+.|++||+|.+|.|+.+. ++..+|++||+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t-------------------------e~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~ 63 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETT-------------------------DESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 63 (196)
T ss_dssp CCGGGGEEEEESCCTTCC-------------------------HHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred CCCCCCEEEEeCCCCCCC-------------------------HHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeC
Confidence 355678999999865422 26899999999999999998875 4668999999999
Q ss_pred cHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 176 EEEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 176 s~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
+.++|.+|+.. +|..++|+.|.|.++..
T Consensus 64 ~~~~A~~A~~~-~~~~~~g~~l~v~~~~~ 91 (196)
T 1l3k_A 64 TVEEVDAAMNA-RPHKVDGRVVEPKRAVS 91 (196)
T ss_dssp SHHHHHHHHHT-CSCEETTEECEEEECCC
T ss_pred CHHHHHHHHhc-CCCEECCEEeeeecccC
Confidence 99999999976 99999999999999754
No 186
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.12 E-value=1.1e-10 Score=88.67 Aligned_cols=71 Identities=14% Similarity=0.333 Sum_probs=61.0
Q ss_pred CCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhcc----C-------CeeEEEEeeCCCCCcee
Q 040106 100 ISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKF----G-------EIECLNVCDNLADHMIG 168 (324)
Q Consensus 100 ~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kf----G-------~I~~V~V~~n~~~~~~G 168 (324)
.+.+|+|.||-.+- ++ +||.+.|++| | +|.++.|..+ +|
T Consensus 5 ~~~~l~V~nLp~~~--------------t~-----------~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg 54 (87)
T 2hzc_A 5 SARRLYVGNIPFGI--------------TE-----------EAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KN 54 (87)
T ss_dssp GGGEEEEESCCTTC--------------CH-----------HHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SS
T ss_pred CCCEEEEeCCCCCC--------------CH-----------HHHHHHHHHHhhhcccccCCCCcceEEEecCC-----Cc
Confidence 56789999986532 12 6788888888 8 9999999865 79
Q ss_pred EEEEEeCcHHHHHHHHHHhcCCeeCCeEEEEEe
Q 040106 169 NVYVQFREEEQAAAALHALQGRFYSGRPIIVEF 201 (324)
Q Consensus 169 ~vyV~F~s~edA~~Ai~~LnGR~f~GR~I~vef 201 (324)
++||+|.+.++|.+|+ .|||..++|++|.|..
T Consensus 55 ~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 55 FAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp EEEEEESSHHHHHHHG-GGTTCEETTEECEEEC
T ss_pred EEEEEcCCHHHHHHHH-hcCCCEECCeEEEEeC
Confidence 9999999999999999 9999999999999863
No 187
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.11 E-value=1.3e-10 Score=104.00 Aligned_cols=77 Identities=26% Similarity=0.391 Sum_probs=67.7
Q ss_pred CCCCeeEeccccC-CCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcH
Q 040106 99 TISPTLLLSNMYQ-RPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREE 177 (324)
Q Consensus 99 ~~S~tLlL~NMy~-~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~ 177 (324)
..+.||+|.||-. +-. +++|++.|++||.|.+|.|+.+. +|++||+|.+.
T Consensus 32 ~~~~~l~V~nLp~~~~t-------------------------e~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~ 82 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVT-------------------------PQSLFILFGVYGDVQRVKILFNK----KENALVQMADG 82 (229)
T ss_dssp CCCSEEEEESCCTTTCC-------------------------HHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCH
T ss_pred CCCCEEEEeCCCcccCC-------------------------HHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCH
Confidence 4678999999865 322 16899999999999999998873 89999999999
Q ss_pred HHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 178 EQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 178 edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
++|.+|++.|||..|.|++|.|.++..
T Consensus 83 ~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 83 NQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp HHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred HHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 999999999999999999999999854
No 188
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.11 E-value=2.4e-10 Score=88.93 Aligned_cols=77 Identities=13% Similarity=0.234 Sum_probs=59.6
Q ss_pred CCCCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEe
Q 040106 95 HNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQF 174 (324)
Q Consensus 95 H~~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F 174 (324)
+..+.++.||.|.||-.+-. ++||++.|++||+|.+|.|+.+ ++||+||+|
T Consensus 5 ~~~~~~~~~l~V~~Lp~~~t-------------------------e~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F 55 (89)
T 3d2w_A 5 HHHHHHGSKVFVGRCTEDMT-------------------------AEELQQFFCQYGEVVDVFIPKP----FRAFAFVTF 55 (89)
T ss_dssp ------CCEEEEESCCTTCC-------------------------HHHHHHHHTTTSCEEEEECCSS----CCSEEEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCC-------------------------HHHHHHHHhccCCEEEEEEeeC----CCCEEEEEE
Confidence 44567888999999877532 2789999999999999999875 699999999
Q ss_pred CcHHHHHHHHHHhcCCee--CCeEEEEEeecC
Q 040106 175 REEEQAAAALHALQGRFY--SGRPIIVEFSPV 204 (324)
Q Consensus 175 ~s~edA~~Ai~~LnGR~f--~GR~I~vefs~v 204 (324)
.+.++|. .|+|..+ +|++|.|.++..
T Consensus 56 ~~~~~A~----~~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 56 ADDKVAQ----SLCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp SCHHHHH----HHTTCEEEETTEEEEEEECC-
T ss_pred CCHHHHH----HHcCCCcccCCEEEEEEEcCC
Confidence 9999987 4677765 599999999753
No 189
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.07 E-value=3.7e-10 Score=94.69 Aligned_cols=80 Identities=18% Similarity=0.219 Sum_probs=66.8
Q ss_pred CCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCC---CceeEEEEEeCc
Q 040106 100 ISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLAD---HMIGNVYVQFRE 176 (324)
Q Consensus 100 ~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~---~~~G~vyV~F~s 176 (324)
.+.+|+|.||-..-. +++|++.|++||+|.+|.|+.+..+ ..+|++||+|.+
T Consensus 2 ~~~~l~V~nLp~~~t-------------------------e~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~ 56 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWS-------------------------EKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYT 56 (175)
T ss_dssp CCEEEEEESCCTTCC-------------------------HHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESS
T ss_pred CceEEEEeCCCCCCC-------------------------HHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECC
Confidence 467899999865321 2689999999999999999887644 689999999999
Q ss_pred HHHHHHHHHHhcCCeeC---CeEEEEEeecC
Q 040106 177 EEQAAAALHALQGRFYS---GRPIIVEFSPV 204 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~---GR~I~vefs~v 204 (324)
.++|.+|++.|||..+. +++|.+.++..
T Consensus 57 ~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~ 87 (175)
T 3nmr_A 57 RKAALEAQNALHNMKVLPGMHHPIQMKPADS 87 (175)
T ss_dssp HHHHHHHHHHHTTTCCCTTCSSCCEEEECGG
T ss_pred HHHHHHHHHHhcCcEEccCCccceEEccccc
Confidence 99999999999998776 68888887643
No 190
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.06 E-value=4e-10 Score=100.86 Aligned_cols=76 Identities=25% Similarity=0.203 Sum_probs=65.2
Q ss_pred CCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccC-CeeEEEEeeCCCCCceeEEEEEeCcHH
Q 040106 100 ISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFG-EIECLNVCDNLADHMIGNVYVQFREEE 178 (324)
Q Consensus 100 ~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG-~I~~V~V~~n~~~~~~G~vyV~F~s~e 178 (324)
++.||+|.||-... + .++|++.|++|| +|..|.|..+ .+|++||+|.+.+
T Consensus 150 ~~~~l~V~nlp~~~--------------t-----------~~~l~~~f~~~G~~i~~v~i~~~----~~g~afV~f~~~~ 200 (229)
T 2adc_A 150 PSATLHLSNIPPSV--------------S-----------EEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVE 200 (229)
T ss_dssp SCSEEEEECCCTTC--------------C-----------HHHHHHHHHTTSCCEEEEEECSS----STTCEEEEESSHH
T ss_pred CCCEEEEeCCCccC--------------C-----------HHHHHHHHHHcCCCeeEEEEEEC----CCcEEEEEECCHH
Confidence 47889999885431 1 278999999999 9999999553 2799999999999
Q ss_pred HHHHHHHHhcCCeeC-CeEEEEEeecC
Q 040106 179 QAAAALHALQGRFYS-GRPIIVEFSPV 204 (324)
Q Consensus 179 dA~~Ai~~LnGR~f~-GR~I~vefs~v 204 (324)
+|.+|+..|||..++ |++|.|.|+..
T Consensus 201 ~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 201 EAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp HHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred HHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 999999999999999 99999999754
No 191
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.06 E-value=1.1e-09 Score=99.97 Aligned_cols=81 Identities=17% Similarity=0.233 Sum_probs=70.0
Q ss_pred CCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCcHH
Q 040106 100 ISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFREEE 178 (324)
Q Consensus 100 ~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s~e 178 (324)
...+|+|.||-... + .++|.+.|++||.|..|.|+.+. ++..+|++||+|.+.+
T Consensus 94 ~~~~l~v~nlp~~~--------------t-----------~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~ 148 (284)
T 3smz_A 94 TDALLCVANLPPSL--------------T-----------QQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKD 148 (284)
T ss_dssp CSCEEEEESCCTTC--------------C-----------HHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CCCEEEEcCCCCcC--------------C-----------HHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHH
Confidence 45689999985532 1 26899999999999999998764 5678999999999999
Q ss_pred HHHHHHHHhcCCeeCCeEEEEEeecCC
Q 040106 179 QAAAALHALQGRFYSGRPIIVEFSPVT 205 (324)
Q Consensus 179 dA~~Ai~~LnGR~f~GR~I~vefs~v~ 205 (324)
+|.+|+..|||..++|++|.|.++...
T Consensus 149 ~a~~A~~~l~~~~~~g~~i~v~~a~~~ 175 (284)
T 3smz_A 149 SAARAKSDLLGKPLGPRTLYVHWTDAG 175 (284)
T ss_dssp HHHHHHHHHTTCEETTEECEEEECCGG
T ss_pred HHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 999999999999999999999998653
No 192
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.06 E-value=9.6e-10 Score=100.42 Aligned_cols=81 Identities=26% Similarity=0.310 Sum_probs=68.5
Q ss_pred CCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHHH
Q 040106 100 ISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQ 179 (324)
Q Consensus 100 ~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~ed 179 (324)
.+.+|+|.||-... + .++|.+.|++||.|..|.|+.+.++..+|++||+|.+.++
T Consensus 95 ~~~~l~v~nl~~~~--------------t-----------~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~ 149 (261)
T 3sde_A 95 HGAALTVKNLSPVV--------------S-----------NELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPP 149 (261)
T ss_dssp CSSEEEEESCCTTC--------------C-----------HHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHH
T ss_pred cCCcccccCCCCCC--------------C-----------HHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHH
Confidence 36789999985432 1 2689999999999999999888777799999999999999
Q ss_pred HHHHHHHh-cCCeeC---CeEEEEEeecCC
Q 040106 180 AAAALHAL-QGRFYS---GRPIIVEFSPVT 205 (324)
Q Consensus 180 A~~Ai~~L-nGR~f~---GR~I~vefs~v~ 205 (324)
|.+|+..| +|.++. |++|.|.++...
T Consensus 150 A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 150 ARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 99999999 566665 999999998643
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.05 E-value=2.2e-10 Score=99.21 Aligned_cols=76 Identities=26% Similarity=0.394 Sum_probs=66.7
Q ss_pred CCCeeEeccccC-CCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHH
Q 040106 100 ISPTLLLSNMYQ-RPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEE 178 (324)
Q Consensus 100 ~S~tLlL~NMy~-~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~e 178 (324)
.+.+|+|.||-. +-. +++|++.|++||.|.+|.|+.+. +|++||+|.+.+
T Consensus 2 ~~~~l~v~nlp~~~~~-------------------------~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~ 52 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVT-------------------------PQSLFILFGVYGDVQRVKILFNK----KENALVQMADGN 52 (198)
T ss_dssp CCCEEEEECCCSSSCC-------------------------HHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTH
T ss_pred CCcEEEEeCCCcccCC-------------------------HHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHH
Confidence 467999999865 322 16899999999999999998763 899999999999
Q ss_pred HHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 179 QAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 179 dA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
+|.+|+..|||..+.|++|.|.++..
T Consensus 53 ~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 53 QAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp HHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred HHHHHHHHhCCCeecCeEEEEEEecC
Confidence 99999999999999999999999854
No 194
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=3.4e-10 Score=91.16 Aligned_cols=60 Identities=20% Similarity=0.320 Sum_probs=53.4
Q ss_pred HHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHHHHHHHHHHhcCCeeCCeEEEEEeecCCC
Q 040106 141 EDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQAAAALHALQGRFYSGRPIIVEFSPVTD 206 (324)
Q Consensus 141 eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~edA~~Ai~~LnGR~f~GR~I~vefs~v~~ 206 (324)
++|++.|++||+|.+|.|+. ..+||+||+|.+.++|..|++.++| +.|++|.|.++....
T Consensus 32 ~~L~~~F~~~G~V~~v~i~~----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 32 DVLLRLLQKYGEVLNLVLSS----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp HHHHHHHHTTSCEEEEEEES----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred HHHHHHHHhcCCEEEEEEcc----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 78999999999999999984 4799999999999999999999776 689999999975443
No 195
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.03 E-value=3.6e-10 Score=96.13 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=55.1
Q ss_pred HHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCc----HHH----HHHHHH--HhcCCeeCCeEEEEEeecC
Q 040106 141 EDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFRE----EEQ----AAAALH--ALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 141 eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s----~ed----A~~Ai~--~LnGR~f~GR~I~vefs~v 204 (324)
++|++.|+.||+|.++.+..+. ++.++||+||+|.+ +++ |.+|+. .|||..|+|++|.|.+-+.
T Consensus 21 ~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 21 ISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNKH 95 (136)
T ss_dssp HHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECCT
T ss_pred HHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECcc
Confidence 6899999999999999998775 56799999999996 433 889988 8999999999999999654
No 196
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=6.5e-10 Score=89.73 Aligned_cols=78 Identities=18% Similarity=0.254 Sum_probs=62.3
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCC----CCceeEEEEEe
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLA----DHMIGNVYVQF 174 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~----~~~~G~vyV~F 174 (324)
..+.+|+|.||-.+-. +++|.+.|++||+|. +.++.+.. +..+|++||+|
T Consensus 6 ~~~~~lfVgnLp~~~t-------------------------e~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f 59 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDID-------------------------EDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLF 59 (114)
T ss_dssp SCCCCEEEECCCTTCC-------------------------HHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECC
T ss_pred CCCCEEEEcCCCCCCC-------------------------HHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEE
Confidence 4578999999865321 278999999999999 77765533 47899999999
Q ss_pred CcHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 175 REEEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 175 ~s~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
.+.++|.+|++.|++ ++|+.|.+..++.
T Consensus 60 ~~~~~a~~Ai~~~~~--~~G~~~~~~~~~~ 87 (114)
T 2dnl_A 60 QEESSVQALIDACLE--EDGKLYLCVSSPT 87 (114)
T ss_dssp SSHHHHHHHHHHSEE--ETTEEEEEECCSS
T ss_pred CCHHHHHHHHHhhhh--cCCcEEEeccCCC
Confidence 999999999999964 7888887776554
No 197
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.00 E-value=7.9e-10 Score=101.39 Aligned_cols=83 Identities=14% Similarity=0.135 Sum_probs=66.1
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccC-CeeEEEEeeCCCCCceeEEEEEeCcH
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFG-EIECLNVCDNLADHMIGNVYVQFREE 177 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG-~I~~V~V~~n~~~~~~G~vyV~F~s~ 177 (324)
..+.+|+|.||-... + .++|.+.|++|| +|..|.|+.+..+..+|++||+|.+.
T Consensus 115 ~~~~~l~v~nlp~~~--------------t-----------~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~ 169 (292)
T 2ghp_A 115 LTECTLWMTNFPPSY--------------T-----------QRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSK 169 (292)
T ss_dssp CCSCEEEEECCCTTC--------------C-----------HHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSH
T ss_pred CCCCEEEEECCCCCC--------------C-----------HHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCH
Confidence 468899999885532 1 268999999999 99999998876677899999999999
Q ss_pred HHHHHHHHHhcCCeeCCeEEEEEeecCCC
Q 040106 178 EQAAAALHALQGRFYSGRPIIVEFSPVTD 206 (324)
Q Consensus 178 edA~~Ai~~LnGR~f~GR~I~vefs~v~~ 206 (324)
++|.+|+..|||..++|++|.|.++....
T Consensus 170 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 198 (292)
T 2ghp_A 170 EDARYCVEKLNGLKIEGYTLVTKVSNPLE 198 (292)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCC-
T ss_pred HHHHHHHHHhCCCEeCCcEEEEEECCCCc
Confidence 99999999999999999999999986543
No 198
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.99 E-value=7.9e-10 Score=100.97 Aligned_cols=77 Identities=19% Similarity=0.285 Sum_probs=66.4
Q ss_pred CCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcH
Q 040106 98 PTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREE 177 (324)
Q Consensus 98 P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~ 177 (324)
++.+.+|+|.||-.+- + +++|.+.|++||.|.+|.|..+ +|++||+|.+.
T Consensus 19 ~~~~~~l~V~nLp~~~--------------t-----------e~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~ 68 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDI--------------T-----------EEDFKRLFERYGEPSEVFINRD-----RGFGFIRLESR 68 (261)
T ss_dssp SCGGGEEEEESCCTTC--------------C-----------HHHHHHHTGGGCCCSEEEEETT-----TTEEEEECSSH
T ss_pred CCCCCEEEEECCCCCC--------------C-----------HHHHHHHHHhcCCEEEEEEeCC-----CcEEEEEECCH
Confidence 3456689999986532 1 2789999999999999999764 79999999999
Q ss_pred HHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 178 EQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 178 edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
++|.+|+..|||..+.|++|.|.++..
T Consensus 69 ~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 69 TLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred HHHHHHHHHcCCcEECCceeEeeeccc
Confidence 999999999999999999999998753
No 199
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.98 E-value=4.1e-10 Score=94.10 Aligned_cols=79 Identities=11% Similarity=0.205 Sum_probs=66.3
Q ss_pred CCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCC-CCCceeEEEEEeCcHH
Q 040106 100 ISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNL-ADHMIGNVYVQFREEE 178 (324)
Q Consensus 100 ~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~-~~~~~G~vyV~F~s~e 178 (324)
.+.+|+|.||-.+-. +++|.+.|++||+|.+|.|+.+. ++.++|++||+|.+.+
T Consensus 2 ~~~~l~v~nLp~~~t-------------------------~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~ 56 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTT-------------------------EDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPS 56 (167)
T ss_dssp GGGEEEECSCCTTCC-------------------------HHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTH
T ss_pred CCcEEEEeCCCCCCC-------------------------HHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHH
Confidence 367899999865322 26899999999999999998874 5678999999999999
Q ss_pred HHHHHHHHhcCCeeCCeEEEEEeecCC
Q 040106 179 QAAAALHALQGRFYSGRPIIVEFSPVT 205 (324)
Q Consensus 179 dA~~Ai~~LnGR~f~GR~I~vefs~v~ 205 (324)
+|.+|+.. +..++|+.|.+.++...
T Consensus 57 ~a~~A~~~--~~~~~g~~i~v~~~~~~ 81 (167)
T 2cjk_A 57 SVDEVVKT--QHILDGKVIDPKRAIPR 81 (167)
T ss_dssp HHHHHHHS--CCEETTEECCCEECCCH
T ss_pred HHHHHHhc--ccccCCeEcccccccch
Confidence 99999984 67899999999887543
No 200
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.97 E-value=1.8e-10 Score=97.44 Aligned_cols=82 Identities=22% Similarity=0.181 Sum_probs=66.0
Q ss_pred CCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCc
Q 040106 97 RPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRE 176 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s 176 (324)
.|..+.+|+|.||-..-. + +||++.|++||.|..+.|.....+..+|++||+|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t--------------~-----------~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~ 63 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKS--------------V-----------AELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFES 63 (175)
T ss_dssp SCSSSEEEEEECCCTTSC--------------H-----------HHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESS
T ss_pred CCCCCcEEEEeCCCCCCC--------------H-----------HHHHHHHHHhCCcceEEEEECCCCccccEEEEEECC
Confidence 566788999999966422 2 678888888887776444444445679999999999
Q ss_pred HHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 177 EEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
.++|.+|+ .|||..+.|++|.|.++..
T Consensus 64 ~~~a~~A~-~l~g~~~~g~~l~v~~~~~ 90 (175)
T 1fje_B 64 AEDLEKAL-ELTGLKVFGNEIKLEKPKG 90 (175)
T ss_dssp HHHHHHHH-HGGGEEETTEEEEEECCCC
T ss_pred HHHHHHHH-hcCCCEeCCeEEEEecCCC
Confidence 99999999 5999999999999999864
No 201
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.96 E-value=1.6e-09 Score=96.55 Aligned_cols=78 Identities=15% Similarity=0.147 Sum_probs=64.6
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCe--eEEEEeeCCCCCceeEEEEEeCc
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEI--ECLNVCDNLADHMIGNVYVQFRE 176 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I--~~V~V~~n~~~~~~G~vyV~F~s 176 (324)
.++.||.|.||-... + +++|++.|++||.| .+|.|..+. +...|++||+|.+
T Consensus 121 ~p~~~l~v~NLp~~~--------------t-----------~~~L~~~F~~~G~v~~~~v~~~~~~-~~~~g~gfV~f~~ 174 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEV--------------T-----------EENFFEICDELGVKRPTSVKVFSGK-SERSSSGLLEWDS 174 (205)
T ss_dssp CCCSEEEEEEECTTC--------------C-----------HHHHHHHHHHHTCCCCSEEEECSCC-SSSSEEEEEECSS
T ss_pred CCcceEEEeCCCCCC--------------C-----------HHHHHHHHHhcCCcceEEEEEEcCC-CCCceEEEEEeCC
Confidence 457789999986532 2 27899999999999 899997764 3456999999999
Q ss_pred HHHHHHHHHHhcCCeeCCe----EEEEEee
Q 040106 177 EEQAAAALHALQGRFYSGR----PIIVEFS 202 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~GR----~I~vefs 202 (324)
.++|.+|+..|||..++|. |++|.|+
T Consensus 175 ~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 175 KSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred HHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 9999999999999999987 6776664
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.95 E-value=1.2e-09 Score=105.92 Aligned_cols=77 Identities=17% Similarity=0.274 Sum_probs=62.5
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHH
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEE 178 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~e 178 (324)
.+|++|.|.|+--... ++ ++||.+.|++||+|.+|.|+. .+||+||+|.+.+
T Consensus 16 ~ps~~l~VgN~gl~~~------------~t-----------e~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~ 67 (345)
T 3tht_A 16 YATQSLVVANGGLGNG------------VS-----------RNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTE 67 (345)
T ss_dssp SCCSEEEEETCSGGGT------------CC-----------HHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHH
T ss_pred CCCCEEEEEcCCCCCC------------CC-----------HHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHH
Confidence 6788999999621111 11 278999999999999998865 3799999999999
Q ss_pred HHHHHHHHhcCCee---CCe--EEEEEeec
Q 040106 179 QAAAALHALQGRFY---SGR--PIIVEFSP 203 (324)
Q Consensus 179 dA~~Ai~~LnGR~f---~GR--~I~vefs~ 203 (324)
+|++|+++|||..+ .|+ +|.+.|+.
T Consensus 68 ~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 68 ESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp HHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred HHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 99999999999988 355 68888874
No 203
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=1e-09 Score=84.04 Aligned_cols=73 Identities=14% Similarity=0.209 Sum_probs=59.6
Q ss_pred CCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHH
Q 040106 99 TISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEE 178 (324)
Q Consensus 99 ~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~e 178 (324)
..+.+|+|.||-.+-. ++||++.|++||+|.+|.|+.+ .+|++||+|.+.+
T Consensus 3 ~~~~~l~V~nLp~~~t-------------------------e~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~ 53 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMT-------------------------EDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQ 53 (88)
T ss_dssp SCCCEEEEESCCSSSC-------------------------HHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHH
T ss_pred CCCcEEEEeCCCCCCC-------------------------HHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHH
Confidence 3578999999965321 2689999999999999999875 6899999999999
Q ss_pred HHHHHHHHhcCCee--CCeEEEEEeecC
Q 040106 179 QAAAALHALQGRFY--SGRPIIVEFSPV 204 (324)
Q Consensus 179 dA~~Ai~~LnGR~f--~GR~I~vefs~v 204 (324)
+|++ |+|..+ .|++|.|.++..
T Consensus 54 ~a~~----~~~~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 54 IAQS----LCGEDLIIKGISVHISNAEP 77 (88)
T ss_dssp HHHH----TTTCEEEETTEEEEEECCCC
T ss_pred HHHH----HhcCCceeCCEEEEEEecCC
Confidence 9974 455544 999999999754
No 204
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.86 E-value=6e-09 Score=83.17 Aligned_cols=62 Identities=19% Similarity=0.458 Sum_probs=55.8
Q ss_pred HhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHHHHHHHHHHhcCCeeCCeEEEEEeecCCCc
Q 040106 137 EDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQAAAALHALQGRFYSGRPIIVEFSPVTDF 207 (324)
Q Consensus 137 d~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~edA~~Ai~~LnGR~f~GR~I~vefs~v~~f 207 (324)
++++.+|.+.|+.||+|..|+|..+ .+||+|.+.++|.+|++ |||..+.||.|.|.+.. .+|
T Consensus 26 ~~l~~~L~~~F~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt-~dW 87 (91)
T 2dnr_A 26 DALIDELLQQFASFGEVILIRFVED-------KMWVTFLEGSSALNVLS-LNGKELLNRTITIALKS-PSG 87 (91)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSS-------SEEEEESSHHHHHHGGG-GTTCEETTEEEEEEECC-CSS
T ss_pred HHHHHHHHHHHHhCCCeEEEEEecC-------CEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCC-CCc
Confidence 4677899999999999999999875 48999999999999998 99999999999999975 344
No 205
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.85 E-value=5.5e-09 Score=87.60 Aligned_cols=74 Identities=14% Similarity=0.303 Sum_probs=61.6
Q ss_pred CCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhcc----C-------CeeEEEEeeCCCCCcee
Q 040106 100 ISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKF----G-------EIECLNVCDNLADHMIG 168 (324)
Q Consensus 100 ~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kf----G-------~I~~V~V~~n~~~~~~G 168 (324)
.+++|+|.||-..- ++ ++|.+.|++| | .|.++.+..+ +|
T Consensus 3 ~~~~l~V~nLp~~~--------------t~-----------~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~-----~g 52 (172)
T 2g4b_A 3 SARRLYVGNIPFGI--------------TE-----------EAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KN 52 (172)
T ss_dssp GGGEEEEESCCTTC--------------CH-----------HHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT-----TT
T ss_pred cccEEEEcCCCccc--------------CH-----------HHHHHHHHHHhhhcccccCCCCceeeeEecCC-----CC
Confidence 36789999986532 22 6788888888 7 7888887654 89
Q ss_pred EEEEEeCcHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 169 NVYVQFREEEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 169 ~vyV~F~s~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
++||+|.+.++|.+|+ .|||..+.|++|.|.++..
T Consensus 53 ~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~ 87 (172)
T 2g4b_A 53 FAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHD 87 (172)
T ss_dssp EEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSS
T ss_pred EEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcc
Confidence 9999999999999999 8999999999999998643
No 206
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.84 E-value=4.8e-09 Score=89.95 Aligned_cols=74 Identities=14% Similarity=0.299 Sum_probs=60.9
Q ss_pred CCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhcc----C-------CeeEEEEeeCCCCCcee
Q 040106 100 ISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKF----G-------EIECLNVCDNLADHMIG 168 (324)
Q Consensus 100 ~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kf----G-------~I~~V~V~~n~~~~~~G 168 (324)
.+++|+|.||-..-. + +||.+.|++| | .|.++.+.. .+|
T Consensus 3 ~~~~l~V~nLp~~~t--------------e-----------~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~-----~~g 52 (198)
T 2yh0_A 3 MARRLYVGNIPFGIT--------------E-----------EAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKN 52 (198)
T ss_dssp -CCEEEEESCCTTCC--------------H-----------HHHHHHHHHHHHHHTCCSSSSCSEEEEEEET-----TTT
T ss_pred ceeEEEEcCCCCCCC--------------H-----------HHHHHHHHHHHhhcccccCCCCceEEeEecC-----CCC
Confidence 578999999876422 2 6788888888 5 677777654 489
Q ss_pred EEEEEeCcHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 169 NVYVQFREEEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 169 ~vyV~F~s~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
++||+|.+.++|.+|+ .|||..+.|++|.|.++..
T Consensus 53 ~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~ 87 (198)
T 2yh0_A 53 FAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHD 87 (198)
T ss_dssp EEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCC
T ss_pred EEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCC
Confidence 9999999999999999 8999999999999998743
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=3.1e-08 Score=79.63 Aligned_cols=58 Identities=21% Similarity=0.434 Sum_probs=53.7
Q ss_pred HhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHHHHHHHHHHhcCCeeCCeEEEEEee
Q 040106 137 EDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQAAAALHALQGRFYSGRPIIVEFS 202 (324)
Q Consensus 137 d~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~edA~~Ai~~LnGR~f~GR~I~vefs 202 (324)
+++..+|.+.|+.||+|..|+|..+ .+||+|.+.++|.+|++ |||..++||.|.|.+-
T Consensus 35 ~~l~~~L~~~F~~~G~Vilvr~v~d-------~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k 92 (95)
T 1ufw_A 35 EDLRTELMQTLGSYGTIVLVRINQG-------QMLVTFADSHSALSVLD-VDGMKVKGRAVKISGP 92 (95)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEETT-------EEEEECSCSHHHHHHHH-GGGSEETTEEEEEECC
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecC-------cEEEEEcChHHHHHHHh-cCCeeeCCeEEEEecc
Confidence 4778899999999999999999876 39999999999999998 9999999999999874
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.16 E-value=5.6e-06 Score=69.04 Aligned_cols=58 Identities=17% Similarity=0.243 Sum_probs=51.9
Q ss_pred HHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCc-HHHHHHHHHHhc--CCeeCCeEEEEEeec
Q 040106 141 EDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRE-EEQAAAALHALQ--GRFYSGRPIIVEFSP 203 (324)
Q Consensus 141 eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s-~edA~~Ai~~Ln--GR~f~GR~I~vefs~ 203 (324)
+||++.|++||+|..|.|..+.. .+||.|.+ +.+|.+|+..|| |..++|..+++++..
T Consensus 34 edLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 34 EDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp HHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred HHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 79999999999999999987642 69999999 899999999994 888999999999864
No 209
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.52 E-value=0.00023 Score=57.97 Aligned_cols=82 Identities=13% Similarity=0.153 Sum_probs=65.8
Q ss_pred CCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHHH
Q 040106 100 ISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQ 179 (324)
Q Consensus 100 ~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~ed 179 (324)
...||++-|+ ++++ +.++++ .+.++..|..|+++........ -.-|-|.|.++++
T Consensus 4 ~pntLiitnl--~~~v-----------F~~~~l-------k~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~ 58 (104)
T 1wey_A 4 GSSGLIACVA--NDDV-----------FSESET-------RAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLS 58 (104)
T ss_dssp CCCEEEEECC--CGGG-----------GSTTTH-------HHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTH
T ss_pred CCceEEEecC--CHHH-----------cCCHHH-------HHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHH
Confidence 3568999998 4443 223333 3678888999999999888765 3489999999999
Q ss_pred HHHHHHHhcCCeeCCeEEEEEeecCCC
Q 040106 180 AAAALHALQGRFYSGRPIIVEFSPVTD 206 (324)
Q Consensus 180 A~~Ai~~LnGR~f~GR~I~vefs~v~~ 206 (324)
|.+|-..|+|..|.|..|.|.|...++
T Consensus 59 A~~AR~~Lh~~~f~g~~~r~YFgq~~~ 85 (104)
T 1wey_A 59 AADARLRLHKTEFLGKEMKLYFAQTLH 85 (104)
T ss_dssp HHHHHHTSTTSEETTEECEEECCCCSS
T ss_pred HHHHHHHhccceecCceeEEEecCCCC
Confidence 999999999999999999999987543
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.00049 Score=56.82 Aligned_cols=57 Identities=21% Similarity=0.262 Sum_probs=50.1
Q ss_pred HHHHHHHhcc-----CCeeEEEEeeCCCCCceeEEEEEeCcHHHHHHHHHHhcCCeeCCeEEEEEee
Q 040106 141 EDIFEELSKF-----GEIECLNVCDNLADHMIGNVYVQFREEEQAAAALHALQGRFYSGRPIIVEFS 202 (324)
Q Consensus 141 eDV~eEf~kf-----G~I~~V~V~~n~~~~~~G~vyV~F~s~edA~~Ai~~LnGR~f~GR~I~vefs 202 (324)
.-|+..++.| |.|..|.+..+ -|=|.|+|.+...|.+|.-+|||..|+||+|.|.-.
T Consensus 36 arIr~lve~~~~i~~g~i~KI~L~pD-----H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 36 SLICQFLQEEIHINEKDIRKILLVSD-----FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp HHHHHHHHHHTCCCTTTCSEEEEETT-----TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred HHHHHHHhhhhccCccceeEEEEecC-----CCceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 3577777888 99999999776 457999999999999999999999999999998754
No 211
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.81 E-value=0.0028 Score=52.67 Aligned_cols=54 Identities=20% Similarity=0.280 Sum_probs=44.7
Q ss_pred HHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHHHHHHHHHHhcCCeeCC-eEEEEE
Q 040106 141 EDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQAAAALHALQGRFYSG-RPIIVE 200 (324)
Q Consensus 141 eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~edA~~Ai~~LnGR~f~G-R~I~ve 200 (324)
..|..+|++||+|++...+.+ ...++|+|.+..+|++|+. .||..++| -.|-|.
T Consensus 38 ~~VL~~F~~~G~Iv~~~~~~~-----~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 38 SYILLQFAQYGNILKHVMSNT-----GNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVK 92 (119)
T ss_dssp HHHHHHHHTTSCEEEEEECSS-----SSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEE
T ss_pred HHHHHHHHhhCcEEEeccCCC-----CCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEE
Confidence 679999999999999988543 3489999999999999997 69999986 434443
No 212
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=96.11 E-value=0.0022 Score=48.20 Aligned_cols=25 Identities=32% Similarity=0.643 Sum_probs=21.9
Q ss_pred CcccccccccccccCCCcCCCCCCC
Q 040106 73 RVNCPFYFKIGACRHGDRCSRLHNR 97 (324)
Q Consensus 73 ~vnC~Fy~K~GACRhGd~CSr~H~~ 97 (324)
...|.+|.++|.|++|+.|.-.|..
T Consensus 12 t~~C~~f~~~G~C~~G~~C~f~H~~ 36 (77)
T 1m9o_A 12 TELCRTYSESGRCRYGAKCQFAHGL 36 (77)
T ss_dssp SCCCSGGGGTSCCTTTTTCSSCSSS
T ss_pred chhCHHhhhCCCcCCCCCccCCCCC
Confidence 4779999999999999999977754
No 213
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=95.72 E-value=0.0062 Score=48.63 Aligned_cols=25 Identities=32% Similarity=0.709 Sum_probs=20.8
Q ss_pred hhhccc-ccCCCCCCCCCCccccccc
Q 040106 210 ATCRQF-EENNCNRGGYCNFMHVKLI 234 (324)
Q Consensus 210 a~C~~~-~~g~C~rG~~Cnf~H~~~~ 234 (324)
..|..| ..|.|..|..|.|.|....
T Consensus 37 ~~C~~f~~~G~C~~G~~C~f~H~~~~ 62 (98)
T 2cqe_A 37 FPCKLYHTTGNCINGDDCMFSHDPLT 62 (98)
T ss_dssp SBCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred CcCcCcccCCcCCCCCCCcccCCCCc
Confidence 568888 4899999999999998543
No 214
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.22 E-value=0.0076 Score=49.85 Aligned_cols=40 Identities=8% Similarity=0.058 Sum_probs=36.8
Q ss_pred CCceeEEEEEeCcHHHHHHHHHHh-cCCeeCCeEEEEEeecC
Q 040106 164 DHMIGNVYVQFREEEQAAAALHAL-QGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 164 ~~~~G~vyV~F~s~edA~~Ai~~L-nGR~f~GR~I~vefs~v 204 (324)
..+.|+++|+|.+.++|++|++.| ||..++| +|.++++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 358999999999999999999999 9999999 999998754
No 215
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.87 E-value=0.024 Score=47.80 Aligned_cols=61 Identities=16% Similarity=0.171 Sum_probs=45.7
Q ss_pred HHHHHHHhccCCeeE-EEEeeCCC---------C-----CceeEEEEEeCcHHHHHHHHHHhcCCeeCCeEEEEEee
Q 040106 141 EDIFEELSKFGEIEC-LNVCDNLA---------D-----HMIGNVYVQFREEEQAAAALHALQGRFYSGRPIIVEFS 202 (324)
Q Consensus 141 eDV~eEf~kfG~I~~-V~V~~n~~---------~-----~~~G~vyV~F~s~edA~~Ai~~LnGR~f~GR~I~vefs 202 (324)
.-|..+|++||.|.+ +.+..... . .....+.|+|.+..+|.+|+. -||..|+|-.|-|..+
T Consensus 21 ~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ii~G~mIGV~Py 96 (132)
T 3p3d_A 21 NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAVFNGVLLGVIPY 96 (132)
T ss_dssp HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCEETTEECEEEEC
T ss_pred HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeEeCcEEEEEEEC
Confidence 579999999999976 33322100 0 024579999999999999996 8999999987777664
No 216
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=94.64 E-value=0.035 Score=45.90 Aligned_cols=36 Identities=8% Similarity=0.016 Sum_probs=29.1
Q ss_pred EEEEeeCCCCCceeEEEEEeCcHHHHHHHHHHhcCCe
Q 040106 155 CLNVCDNLADHMIGNVYVQFREEEQAAAALHALQGRF 191 (324)
Q Consensus 155 ~V~V~~n~~~~~~G~vyV~F~s~edA~~Ai~~LnGR~ 191 (324)
++.|..|.. .+.|++||+|.+.++|++|++.+++..
T Consensus 2 ~~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 2 QYKLILNGK-TLKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cEEEEecCc-cccchhHHHHHHHHhHHHHHHhhcccC
Confidence 455655543 589999999999999999999998643
No 217
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.83 E-value=0.026 Score=42.86 Aligned_cols=24 Identities=21% Similarity=0.682 Sum_probs=18.7
Q ss_pred hhhccccc-CCCCCCCCCCccccccc
Q 040106 210 ATCRQFEE-NNCNRGGYCNFMHVKLI 234 (324)
Q Consensus 210 a~C~~~~~-g~C~rG~~Cnf~H~~~~ 234 (324)
.+|..|.. |.|. |..|.|+|+...
T Consensus 39 ~~C~~f~~~G~C~-~~~C~f~H~~~~ 63 (77)
T 2d9n_A 39 PECYFYSKFGECS-NKECPFLHIDPE 63 (77)
T ss_dssp CBCHHHHHTCCCC-CSSCSSBCCCTT
T ss_pred CCCcccCCCCccC-CCCeeccCCCcc
Confidence 46888877 8888 788888888754
No 218
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=93.65 E-value=0.029 Score=42.28 Aligned_cols=25 Identities=36% Similarity=0.995 Sum_probs=19.3
Q ss_pred CCCcccccccccccccCCCcCCCCCC
Q 040106 71 KDRVNCPFYFKIGACRHGDRCSRLHN 96 (324)
Q Consensus 71 ~d~vnC~Fy~K~GACRhGd~CSr~H~ 96 (324)
...+.|.||.+ |.|..|+.|.-.|.
T Consensus 14 ~k~~vCk~fl~-G~C~~G~~C~fsH~ 38 (72)
T 2rhk_C 14 EKTVVCKHWLR-GLCKKGDQCEFLHE 38 (72)
T ss_dssp CCCSBCHHHHT-TCCCCGGGSSSBCS
T ss_pred CcCeeCHHHhc-CCCCCCCCCCCccc
Confidence 34577987777 99999999996664
No 219
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=90.81 E-value=0.79 Score=36.83 Aligned_cols=41 Identities=24% Similarity=0.468 Sum_probs=34.5
Q ss_pred HHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHHHHHHHHHHhc
Q 040106 141 EDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQAAAALHALQ 188 (324)
Q Consensus 141 eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~edA~~Ai~~Ln 188 (324)
.||...|+.||.|.=-+|.+. -|||.|.+.+.|..|+..|+
T Consensus 30 ~DI~~lFs~fggv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 30 SDLYQLFSAFGNIQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp HHHHHHHTTTCSCCCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 699999999997665555443 79999999999999999874
No 220
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.58 E-value=0.09 Score=39.78 Aligned_cols=30 Identities=20% Similarity=0.635 Sum_probs=26.0
Q ss_pred CCchhhhhcccccCCCCCCCCCCccccccc
Q 040106 205 TDFREATCRQFEENNCNRGGYCNFMHVKLI 234 (324)
Q Consensus 205 ~~f~ea~C~~~~~g~C~rG~~Cnf~H~~~~ 234 (324)
...+..+|..|..|.|.+|..|.|+|....
T Consensus 6 ~~~k~~~C~~fl~G~C~~G~~C~fsH~~~~ 35 (77)
T 2d9n_A 6 SGEKTVVCKHWLRGLCKKGDQCEFLHEYDM 35 (77)
T ss_dssp SCCTTSBCHHHHTTCCSCTTSSSSBCSCCT
T ss_pred CCCcceeCHhHccCcCCCCCCCCCcccccc
Confidence 445678999999999999999999998654
No 221
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=90.17 E-value=0.074 Score=39.59 Aligned_cols=25 Identities=40% Similarity=0.898 Sum_probs=21.7
Q ss_pred hhhhcccccCCCCCCC-CCCcccccc
Q 040106 209 EATCRQFEENNCNRGG-YCNFMHVKL 233 (324)
Q Consensus 209 ea~C~~~~~g~C~rG~-~Cnf~H~~~ 233 (324)
.++|..|..|.|.+|. .|.|.|...
T Consensus 6 ~~vC~~f~~G~C~rg~~~C~f~H~~~ 31 (70)
T 3d2q_A 6 LEVCREYQRGNCNRGENDCRFAHPAD 31 (70)
T ss_dssp EEBCHHHHTTCCSSCTTTCSSBCCCT
T ss_pred chhCHHHhcCCCCCCCCCCCCccCcc
Confidence 4689999999999999 599999653
No 222
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=89.34 E-value=0.1 Score=39.16 Aligned_cols=32 Identities=19% Similarity=0.600 Sum_probs=26.2
Q ss_pred cCCCchhhhhcccccCCCCCCCCCCccccccc
Q 040106 203 PVTDFREATCRQFEENNCNRGGYCNFMHVKLI 234 (324)
Q Consensus 203 ~v~~f~ea~C~~~~~g~C~rG~~Cnf~H~~~~ 234 (324)
........+|..|..|.|.+|..|.|.|...+
T Consensus 10 ~~~~~k~~vCk~fl~G~C~~G~~C~fsH~~~~ 41 (72)
T 2rhk_C 10 HMSGEKTVVCKHWLRGLCKKGDQCEFLHEYDM 41 (72)
T ss_dssp SSSCCCCSBCHHHHTTCCCCGGGSSSBCSCCT
T ss_pred cCCCCcCeeCHHHhcCCCCCCCCCCCcccccc
Confidence 34456678999999999999999999997643
No 223
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=89.17 E-value=0.13 Score=39.82 Aligned_cols=26 Identities=31% Similarity=0.751 Sum_probs=22.9
Q ss_pred hhhhhcccccCCCCCCC-CCCcccccc
Q 040106 208 REATCRQFEENNCNRGG-YCNFMHVKL 233 (324)
Q Consensus 208 ~ea~C~~~~~g~C~rG~-~Cnf~H~~~ 233 (324)
+.++|+.|..|.|.+|. .|.|.|...
T Consensus 8 ~~~VCr~FlrG~C~r~d~~C~f~H~~~ 34 (83)
T 3d2n_A 8 TLEVCREFQRGTCSRPDTECKFAHPSK 34 (83)
T ss_dssp EEEBCTTGGGTCCCSCTTTCSSBCCCT
T ss_pred cchhcHHHhcCCCCCCCCCCCCcCCCc
Confidence 45789999999999996 999999864
No 224
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=87.88 E-value=0.23 Score=36.86 Aligned_cols=32 Identities=22% Similarity=0.585 Sum_probs=27.1
Q ss_pred cCCCchhhhhcccc-cCCCCCCCCCCccccccc
Q 040106 203 PVTDFREATCRQFE-ENNCNRGGYCNFMHVKLI 234 (324)
Q Consensus 203 ~v~~f~ea~C~~~~-~g~C~rG~~Cnf~H~~~~ 234 (324)
+...|+...|..|. .|.|..|..|.|.|....
T Consensus 6 ~~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e 38 (77)
T 1m9o_A 6 TSSRYKTELCRTYSESGRCRYGAKCQFAHGLGE 38 (77)
T ss_dssp CSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCC
T ss_pred CCCCccchhCHHhhhCCCcCCCCCccCCCCChh
Confidence 45678889999995 899999999999997653
No 225
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=86.87 E-value=0.15 Score=40.04 Aligned_cols=27 Identities=33% Similarity=0.730 Sum_probs=23.7
Q ss_pred hhhhhcccccCCCCCCC-CCCccccccc
Q 040106 208 REATCRQFEENNCNRGG-YCNFMHVKLI 234 (324)
Q Consensus 208 ~ea~C~~~~~g~C~rG~-~Cnf~H~~~~ 234 (324)
+.++|+.|+.|.|.+|. .|.|.|....
T Consensus 16 ~~~VCrdFlrG~C~r~d~~CrfsH~~~~ 43 (89)
T 2rpp_A 16 TLEVCRQFQRGTCSRSDEECKFAHPPKS 43 (89)
T ss_dssp EECBCHHHHHTCCCCCTTTSSSBCCCSS
T ss_pred hhhhchHHhcCCCCCCCCCCCCcCCCcc
Confidence 45799999999999998 9999997654
No 226
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=85.63 E-value=3.8 Score=32.01 Aligned_cols=64 Identities=28% Similarity=0.501 Sum_probs=44.0
Q ss_pred HHHHHHHhccCCeeEEEEeeCC---CCCceeEEEEEeCcHHHHHHHHHHhcCCeeC---C--eEEEEEeecC
Q 040106 141 EDIFEELSKFGEIECLNVCDNL---ADHMIGNVYVQFREEEQAAAALHALQGRFYS---G--RPIIVEFSPV 204 (324)
Q Consensus 141 eDV~eEf~kfG~I~~V~V~~n~---~~~~~G~vyV~F~s~edA~~Ai~~LnGR~f~---G--R~I~vefs~v 204 (324)
+++.+.++.+..+.-...+... ..+.-..|||.|.+.+++..-.+.++|..|- | -+-.|+|+|-
T Consensus 16 eeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~VE~AP~ 87 (91)
T 1uw4_A 16 EQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPF 87 (91)
T ss_dssp HHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECEEEECSS
T ss_pred HHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeEEEEcCC
Confidence 3455555666676666554432 2235678999999999999999999999873 2 2335777764
No 227
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.51 E-value=0.25 Score=37.19 Aligned_cols=23 Identities=26% Similarity=0.816 Sum_probs=21.3
Q ss_pred hhhcccccCCCCCCCCCCccccc
Q 040106 210 ATCRQFEENNCNRGGYCNFMHVK 232 (324)
Q Consensus 210 a~C~~~~~g~C~rG~~Cnf~H~~ 232 (324)
..|..|..|.|+.|..|.|.|-.
T Consensus 21 ~LC~~~~~G~C~~G~~C~FAHG~ 43 (69)
T 2d9m_A 21 SICDRYMNGTCPEGNSCKFAHGN 43 (69)
T ss_dssp SBCHHHHHSCCSSCSSCSSBSSH
T ss_pred ccCcccCcCCCCCCCccCCcCCH
Confidence 78999999999999999999965
No 228
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=84.61 E-value=0.25 Score=36.66 Aligned_cols=28 Identities=21% Similarity=0.624 Sum_probs=23.9
Q ss_pred CCCchhhhhcccccCCCCCCCCCCccccc
Q 040106 204 VTDFREATCRQFEENNCNRGGYCNFMHVK 232 (324)
Q Consensus 204 v~~f~ea~C~~~~~g~C~rG~~Cnf~H~~ 232 (324)
+......+|..|..|.|.+| .|.|+|..
T Consensus 37 ~~~~~~~vC~~flkG~C~r~-~C~y~H~~ 64 (70)
T 3d2q_A 37 TNDNTVTVCMDYIKGRCSRE-KCKYFHPP 64 (70)
T ss_dssp TTTTEEEBCHHHHTTCCCCT-TCCSBCCC
T ss_pred ccCCcceeccccCcCCCCCC-CcCeeCCH
Confidence 34566788999999999999 99999964
No 229
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=84.20 E-value=0.41 Score=37.93 Aligned_cols=30 Identities=20% Similarity=0.525 Sum_probs=25.2
Q ss_pred chhhhhcccccCCCCCCCCCCcccccccCh
Q 040106 207 FREATCRQFEENNCNRGGYCNFMHVKLIGR 236 (324)
Q Consensus 207 f~ea~C~~~~~g~C~rG~~Cnf~H~~~~~r 236 (324)
++...|..|..|.|.+|..|.|+|...+..
T Consensus 11 ~k~~lC~~f~~G~C~~G~~C~f~H~~~~C~ 40 (98)
T 2cqe_A 11 KKRELCKFYITGFCARAENCPYMHGDFPCK 40 (98)
T ss_dssp CCCSBCTTTTTTCCSCSTTCSSBSSSSBCS
T ss_pred CCCccCcccccCcCCCCCCCCCCCCCCcCc
Confidence 567799999999999999999999844433
No 230
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.78 E-value=0.12 Score=41.26 Aligned_cols=27 Identities=37% Similarity=0.816 Sum_probs=23.0
Q ss_pred hhhhhcccccCCCCCCC-CCCccccccc
Q 040106 208 REATCRQFEENNCNRGG-YCNFMHVKLI 234 (324)
Q Consensus 208 ~ea~C~~~~~g~C~rG~-~Cnf~H~~~~ 234 (324)
+..+|+.|..|.|.+|. .|.|.|....
T Consensus 19 k~~VCr~FlrG~C~rgd~~C~FsH~~~~ 46 (98)
T 2e5s_A 19 KLEVCREFQRGNCARGETDCRFAHPADS 46 (98)
T ss_dssp EEEBCSHHHHTCCSSHHHHCSSBCCSSC
T ss_pred hhhhhHHHhcCcCCCCCCCCCCcCCchh
Confidence 34689999999999998 8999997643
No 231
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=81.11 E-value=1 Score=36.24 Aligned_cols=41 Identities=22% Similarity=0.434 Sum_probs=33.1
Q ss_pred HHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHHHHHHHHHHhc
Q 040106 141 EDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQAAAALHALQ 188 (324)
Q Consensus 141 eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~edA~~Ai~~Ln 188 (324)
.||...|+.||.|.=-+|. + .-|||.|.+.+.|..|+..|+
T Consensus 20 ~Di~~lFs~fggv~I~Wid-D------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 20 SDLYQLFSAFGNIQISWID-D------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp HHHHHHTTTSEEEEEEEEE-T------TEEEEEEEEECHHHHHHHHHT
T ss_pred HHHHHHHhccCCEEEEEEc-C------CeEEEEecCHHHHHHHHHhcc
Confidence 6999999999955444443 3 279999999999999999875
No 232
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.07 E-value=0.58 Score=37.16 Aligned_cols=28 Identities=21% Similarity=0.585 Sum_probs=24.0
Q ss_pred CCchhhhhcccccCCCCCCCCCCcccccc
Q 040106 205 TDFREATCRQFEENNCNRGGYCNFMHVKL 233 (324)
Q Consensus 205 ~~f~ea~C~~~~~g~C~rG~~Cnf~H~~~ 233 (324)
..-...+|..|..|.|.+| .|.|+|...
T Consensus 52 ~~~~~~vC~~flkG~C~r~-~C~y~H~~~ 79 (98)
T 2e5s_A 52 SDNTVTVCMDYIKGRCMRE-KCKYFHPPA 79 (98)
T ss_dssp TTCEEEBCHHHHHTCCCCT-TCCSBCCCH
T ss_pred cCCccccchhhccCCCCCC-CcCccCChH
Confidence 4566778999999999999 999999654
No 233
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=72.73 E-value=0.8 Score=41.82 Aligned_cols=30 Identities=23% Similarity=0.459 Sum_probs=25.8
Q ss_pred hhhcccccCCCCCCCCCCcccccccChhhh
Q 040106 210 ATCRQFEENNCNRGGYCNFMHVKLIGRDLR 239 (324)
Q Consensus 210 a~C~~~~~g~C~rG~~Cnf~H~~~~~r~l~ 239 (324)
-+|-.|..|.|.+|..|.|+|-++...++.
T Consensus 71 ~~C~ffakG~C~~G~~C~y~H~lPt~~d~~ 100 (240)
T 3u1l_A 71 FFCLFFAKGMCCLGPKCEYLHHIPDEEDIG 100 (240)
T ss_dssp SBCHHHHTTCCSCGGGCSSBBSCCCHHHHH
T ss_pred eEcCccccCCCCCCCCCCccCCCCCccchh
Confidence 389999999999999999999887766554
No 234
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.21 E-value=0.93 Score=34.07 Aligned_cols=21 Identities=33% Similarity=0.752 Sum_probs=17.3
Q ss_pred cccccccccccccCCCcCCCCC
Q 040106 74 VNCPFYFKIGACRHGDRCSRLH 95 (324)
Q Consensus 74 vnC~Fy~K~GACRhGd~CSr~H 95 (324)
..|..| .+|.|.+|++|..-|
T Consensus 21 ~LC~~~-~~G~C~~G~~C~FAH 41 (69)
T 2d9m_A 21 SICDRY-MNGTCPEGNSCKFAH 41 (69)
T ss_dssp SBCHHH-HHSCCSSCSSCSSBS
T ss_pred ccCccc-CcCCCCCCCccCCcC
Confidence 569988 789999999999444
No 235
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=70.27 E-value=2.1 Score=42.87 Aligned_cols=41 Identities=20% Similarity=0.258 Sum_probs=31.5
Q ss_pred HHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHHHHHHHHH
Q 040106 141 EDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQAAAALH 185 (324)
Q Consensus 141 eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~edA~~Ai~ 185 (324)
.+|.+.|++||+|.++...++. .-+|-|+|.+.++|..++.
T Consensus 67 ~~l~~y~~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 67 NKFLKYLSQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp CHHHHHHGGGSCCCCEEEECSS----SEEEEEECC---CCHHHHS
T ss_pred HHHHHHHHhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHh
Confidence 5799999999999999998763 2589999999998886543
No 236
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=70.26 E-value=3.2 Score=33.36 Aligned_cols=36 Identities=14% Similarity=0.275 Sum_probs=30.5
Q ss_pred CeeEEEEeeCCCCCceeEEEEEeCcHHHHHHHHHHhcCCe
Q 040106 152 EIECLNVCDNLADHMIGNVYVQFREEEQAAAALHALQGRF 191 (324)
Q Consensus 152 ~I~~V~V~~n~~~~~~G~vyV~F~s~edA~~Ai~~LnGR~ 191 (324)
.|.+|.++++ ++||+||+=.++.+...|++.+.+-+
T Consensus 40 ~I~Si~~~~~----lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAPEH----VKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEECTT----CCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEecCC----CceEEEEEeCCHHHHHHHHhccccee
Confidence 4888888765 79999999999999999988886654
No 237
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=67.57 E-value=10 Score=29.29 Aligned_cols=34 Identities=9% Similarity=0.200 Sum_probs=29.0
Q ss_pred eeEEEEeeCCCCCceeEEEEEeCcHHHHHHHHHHhcCC
Q 040106 153 IECLNVCDNLADHMIGNVYVQFREEEQAAAALHALQGR 190 (324)
Q Consensus 153 I~~V~V~~n~~~~~~G~vyV~F~s~edA~~Ai~~LnGR 190 (324)
|.+|.|+.. ..|+|||++...++...+++.+.|-
T Consensus 40 i~~v~vP~~----fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILASES----LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEECTT----STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEecc----cCCEEEEEEecchhHHHHHHCCCCc
Confidence 888888764 7899999999999988888888763
No 238
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=65.92 E-value=1.6 Score=33.63 Aligned_cols=25 Identities=24% Similarity=0.594 Sum_probs=21.1
Q ss_pred hhhhhcccccCCCCCCCCCCcccccc
Q 040106 208 REATCRQFEENNCNRGGYCNFMHVKL 233 (324)
Q Consensus 208 ~ea~C~~~~~g~C~rG~~Cnf~H~~~ 233 (324)
...+|..|..|.|.++ .|.|.|...
T Consensus 42 ~~~vC~dflkG~C~r~-~C~y~H~~~ 66 (83)
T 3d2n_A 42 RVIACFDSLKGRCSRE-NCKYLHPPP 66 (83)
T ss_dssp EEECCHHHHTTCCCCS-SCSSCCCCH
T ss_pred ceeehhHhhhccccCC-CcceeCChH
Confidence 3467999999999998 899999643
No 239
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=58.63 E-value=22 Score=34.66 Aligned_cols=29 Identities=24% Similarity=0.121 Sum_probs=16.6
Q ss_pred eCcHHHHHHHHHHhcCCeeCCeEEEEEeecC
Q 040106 174 FREEEQAAAALHALQGRFYSGRPIIVEFSPV 204 (324)
Q Consensus 174 F~s~edA~~Ai~~LnGR~f~GR~I~vefs~v 204 (324)
|-...+...|..+|.. ++|..|.-....|
T Consensus 148 FV~F~~~e~A~~Ai~~--lng~~i~gr~i~V 176 (437)
T 3pgw_S 148 FIEYEHERDMHSAYKH--ADGKKIDGRRVLV 176 (437)
T ss_pred EEeeccHHHHHHHHHH--cCCCEECCEEEEE
Confidence 4455566677777764 5676664444333
No 240
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=58.21 E-value=32 Score=34.33 Aligned_cols=42 Identities=24% Similarity=0.453 Sum_probs=32.9
Q ss_pred HHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCcHHHHHHHHHHhcC
Q 040106 141 EDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQAAAALHALQG 189 (324)
Q Consensus 141 eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s~edA~~Ai~~LnG 189 (324)
.||.+.|+.||.| .|.-..+ -.+||.|.+.+.|..++++++.
T Consensus 454 ~~i~~~fs~fg~v-~V~widd------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 454 SDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp HHHHHHGGGGCCC-EEEECSS------SEEEEECSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCE-EEEEEcC------CeEEEEECCHHHHHHHHHHHHh
Confidence 5888899999965 3433333 2799999999999999999963
No 241
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=56.56 E-value=5.4 Score=35.59 Aligned_cols=46 Identities=15% Similarity=0.283 Sum_probs=35.4
Q ss_pred eeEEEEeeCCCCCceeEEEEEeCcHHHHHHHHHHhcCCeeCCeEEEEEeecCCC
Q 040106 153 IECLNVCDNLADHMIGNVYVQFREEEQAAAALHALQGRFYSGRPIIVEFSPVTD 206 (324)
Q Consensus 153 I~~V~V~~n~~~~~~G~vyV~F~s~edA~~Ai~~LnGR~f~GR~I~vefs~v~~ 206 (324)
|.+|.+++. ++|+|||+=.+..+...|++.|.+-+. .++ .+.|+..
T Consensus 139 I~Si~~~d~----lkGYIyVEA~~~~~V~~ai~Gi~~vy~-~~~---~lVPi~E 184 (200)
T 2exu_A 139 ILSIFQRDN----YTGRIYIEAPKQSVIEKFCNGVPDIYI-SQK---LLIPVQE 184 (200)
T ss_dssp CCEEECCTT----STTEEEEECSCHHHHHHHHTTCTTEEE-EEE---EECCGGG
T ss_pred EEEEEecCC----CcEEEEEEECCHHHHHHHHhhhhhhhc-CCc---eEecHHH
Confidence 888877654 899999999999999999999988643 333 3555544
No 242
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.95 E-value=34 Score=27.43 Aligned_cols=52 Identities=13% Similarity=0.066 Sum_probs=36.9
Q ss_pred HHHHHHhc-----cCCeeEEEEeeCCCCCceeEEEEEeCcHHHHHHHHHHhcCCeeCCeEEEEEe
Q 040106 142 DIFEELSK-----FGEIECLNVCDNLADHMIGNVYVQFREEEQAAAALHALQGRFYSGRPIIVEF 201 (324)
Q Consensus 142 DV~eEf~k-----fG~I~~V~V~~n~~~~~~G~vyV~F~s~edA~~Ai~~LnGR~f~GR~I~vef 201 (324)
.|...|++ =|+|++|.... +-|+|+|.+.+.|+..++. .-..|.|-+|.|.-
T Consensus 24 ~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 24 LLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRP 80 (104)
T ss_dssp HHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEE
T ss_pred HheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEc
Confidence 56666765 36899998754 4789999999999877763 13456676776644
No 243
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=50.45 E-value=20 Score=28.36 Aligned_cols=39 Identities=23% Similarity=0.556 Sum_probs=31.1
Q ss_pred ceeEEEEEeCcHHHHHHHHHHhcCCeeCC-----eEEEEEeecC
Q 040106 166 MIGNVYVQFREEEQAAAALHALQGRFYSG-----RPIIVEFSPV 204 (324)
Q Consensus 166 ~~G~vyV~F~s~edA~~Ai~~LnGR~f~G-----R~I~vefs~v 204 (324)
.-..|||.|.+.++...-.+.++|..|-. -+-.|+|+|-
T Consensus 52 ~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~VE~APy 95 (97)
T 2l08_A 52 LYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVVEFAPF 95 (97)
T ss_dssp CCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEEEEECCC
T ss_pred cceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeEEEecCC
Confidence 34679999999999999999999988732 3456777764
No 244
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=50.01 E-value=3.9 Score=31.91 Aligned_cols=31 Identities=23% Similarity=0.550 Sum_probs=24.0
Q ss_pred hhhhcccccCCCCCCCCCCcccccccChhhhhhhh
Q 040106 209 EATCRQFEENNCNRGGYCNFMHVKLIGRDLRNKLF 243 (324)
Q Consensus 209 ea~C~~~~~g~C~rG~~Cnf~H~~~~~r~l~~~l~ 243 (324)
..+|..|..|.|.++ .|.|.|.. ..|...|.
T Consensus 51 ~~vC~dflkG~C~r~-~Cky~H~~---~hl~~~~~ 81 (89)
T 2rpp_A 51 VIACFDSLKGRCSRE-NCKYLHPP---THLKTQLE 81 (89)
T ss_dssp EEBCHHHHHTCCCCT-TCCSBCCC---HHHHHHHH
T ss_pred eeeehhhhhCcCCCC-CcceecCH---HHHHHHHH
Confidence 567899999999998 89999964 45555443
No 245
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=41.75 E-value=5.6 Score=28.01 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=22.8
Q ss_pred hhhhhccccc-CCCCCCCCCCcccccccC
Q 040106 208 REATCRQFEE-NNCNRGGYCNFMHVKLIG 235 (324)
Q Consensus 208 ~ea~C~~~~~-g~C~rG~~Cnf~H~~~~~ 235 (324)
...+|.+|-. |-|+.|..|++.|-...+
T Consensus 19 ~~~iC~~FSayGwCp~G~~Cp~SHDiDl~ 47 (50)
T 2fc6_A 19 PTSICDNFSAYGWCPLGPQCPQSHDISGP 47 (50)
T ss_dssp CSCBCSHHHHTCCCTTGGGCSSBCCCCCC
T ss_pred ccchhhhccccccCCCCCCCCccccCCCC
Confidence 4578888865 789999999999977654
No 246
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=41.25 E-value=51 Score=26.79 Aligned_cols=55 Identities=16% Similarity=0.058 Sum_probs=32.4
Q ss_pred cCCeeEEEEeeCCCCCceeEEEEE-eCcHHHHHHHHHHhcCCe-----eCCeEEEEEeecCCCc
Q 040106 150 FGEIECLNVCDNLADHMIGNVYVQ-FREEEQAAAALHALQGRF-----YSGRPIIVEFSPVTDF 207 (324)
Q Consensus 150 fG~I~~V~V~~n~~~~~~G~vyV~-F~s~edA~~Ai~~LnGR~-----f~GR~I~vefs~v~~f 207 (324)
+=.|..|.|..+. ..-.|||. |-+.++...++.+|+... .=|+.|.+-+.|.-.|
T Consensus 43 ~vtVt~V~vS~Dl---~~AkVyvs~~~~~~~~~~~~~~L~~a~g~iR~~l~~~l~lr~~PeL~F 103 (129)
T 2e7g_A 43 NVELSKVSLTPDF---SACRAYWKTTLSAEQNAHMEAVLQRSAAHMRHLLMSQQTLRNVPPIVF 103 (129)
T ss_dssp TCCEEEEEECTTS---CCEEEEECCCSCHHHHHHHHHHHHHTHHHHHHHHHTCTTCSCCCCEEE
T ss_pred eeEEEEEEECCCC---cEEEEEEEecCChhhHHHHHHHHHHhHHHHHHHHHhhcCCccCCeEEE
Confidence 4578888887664 45789998 766655555555554321 1244444555555444
No 247
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=39.01 E-value=19 Score=25.96 Aligned_cols=53 Identities=21% Similarity=0.397 Sum_probs=35.8
Q ss_pred HHHHHHhc-cC----CeeEEEEeeCCCCCceeEEEEEeCcHHHHHHHHHHhcCCeeCCeEEEEEee
Q 040106 142 DIFEELSK-FG----EIECLNVCDNLADHMIGNVYVQFREEEQAAAALHALQGRFYSGRPIIVEFS 202 (324)
Q Consensus 142 DV~eEf~k-fG----~I~~V~V~~n~~~~~~G~vyV~F~s~edA~~Ai~~LnGR~f~GR~I~vefs 202 (324)
+|...+.+ -| .|-.|.|.++ +.||+-.. +.|..+++.|++..+.|+.|.++.+
T Consensus 17 ~ivg~i~~~~gi~~~~IG~I~i~d~-------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 17 DFVGTIAKIDGVSADDIGIITIMDN-------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp HHHHHHHTSTTCCGGGEEEEEECSS-------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEEC
T ss_pred HHHHHHHHccCCChhhccEEEEeCC-------cEEEEECH-HHHHHHHHHhccccCcCceEEEEEC
Confidence 45554433 33 4778888655 77888754 4588899999999999999988764
No 248
>1k4n_A Protein EC4020, protein YECM; structural genomics, A NEW fold of protein, PSI, protein structure initiative; 1.60A {Escherichia coli} SCOP: d.32.1.5
Probab=37.63 E-value=78 Score=27.98 Aligned_cols=63 Identities=17% Similarity=0.332 Sum_probs=46.8
Q ss_pred ChhHHHhhHHhHHHHHHHHHhccC-CeeEEEEeeCCCCCceeEEEEEeCcHHHHHHHHHHhcC-------CeeCCeEEEE
Q 040106 128 DPRKIQEHFEDFYEDIFEELSKFG-EIECLNVCDNLADHMIGNVYVQFREEEQAAAALHALQG-------RFYSGRPIIV 199 (324)
Q Consensus 128 d~eel~~~fd~~~eDV~eEf~kfG-~I~~V~V~~n~~~~~~G~vyV~F~s~edA~~Ai~~LnG-------R~f~GR~I~v 199 (324)
+..++...+..|++.|.......| .+....+ --+=+...+.+.|+.+..+|-- -.++||+|.+
T Consensus 13 ~~~~l~~dl~~F~~ki~~l~~~Lgldl~~~~~---------DHIalRvn~~~~Ae~~~~~l~~~G~llSen~INGRPI~l 83 (192)
T 1k4n_A 13 ELQDIASDLPRFIHALDELSRRLGLNITPLTA---------DHISLRCHQNATAERWRRGFEQCGELLSENMINGRPICL 83 (192)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHTCCCTTCEE---------EEEEEECSCHHHHHHHHHHHTTTEEEEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCchhccC---------cEEEEecCCHHHHHHHHHHHHHhchhhhccccCCeeEEE
Confidence 357788899999999999998888 4433322 1345566788999988888754 3579999876
No 249
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=37.33 E-value=12 Score=26.23 Aligned_cols=29 Identities=24% Similarity=0.461 Sum_probs=24.2
Q ss_pred CcccccccccccccCCCcCCCCCCCCCCC
Q 040106 73 RVNCPFYFKIGACRHGDRCSRLHNRPTIS 101 (324)
Q Consensus 73 ~vnC~Fy~K~GACRhGd~CSr~H~~P~~S 101 (324)
...|.-|.--|-|+.|.+|+..|..-.++
T Consensus 20 ~~iC~~FSayGwCp~G~~Cp~SHDiDl~~ 48 (50)
T 2fc6_A 20 TSICDNFSAYGWCPLGPQCPQSHDISGPS 48 (50)
T ss_dssp SCBCSHHHHTCCCTTGGGCSSBCCCCCCC
T ss_pred cchhhhccccccCCCCCCCCccccCCCCC
Confidence 45699999999999999999999865443
No 250
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=34.19 E-value=29 Score=28.71 Aligned_cols=34 Identities=12% Similarity=0.221 Sum_probs=29.3
Q ss_pred eeEEEEeeCCCCCceeEEEEEeCcHHHHHHHHHHhcCC
Q 040106 153 IECLNVCDNLADHMIGNVYVQFREEEQAAAALHALQGR 190 (324)
Q Consensus 153 I~~V~V~~n~~~~~~G~vyV~F~s~edA~~Ai~~LnGR 190 (324)
|.+|.++.. ..||+||++...++...+++.+.|-
T Consensus 33 i~~v~vp~~----fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 33 IYAILAPSR----VKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCEEEECTT----CCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEeecC----CCcEEEEEEEchHHHHHHHhCCCCE
Confidence 888888753 6899999999999999999888874
No 251
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=30.93 E-value=20 Score=32.62 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=21.1
Q ss_pred Ccccccccc----cccccCCCcCCCCCCCC
Q 040106 73 RVNCPFYFK----IGACRHGDRCSRLHNRP 98 (324)
Q Consensus 73 ~vnC~Fy~K----~GACRhGd~CSr~H~~P 98 (324)
...|.+| | -|.|-+++.|.++|+=.
T Consensus 151 PeiC~~Y-kG~g~~g~C~~~~~C~kLHIC~ 179 (229)
T 3u9g_A 151 PEICKSY-KGEGRKQTCGQPQPCERLHICE 179 (229)
T ss_dssp CCBCTTC-CCSSSCCSCSSSSCCCSBCSCH
T ss_pred chHHHHh-CCCCCCCcCCCCCCCcceeccc
Confidence 4679999 7 37999999999999853
No 252
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=25.31 E-value=75 Score=29.80 Aligned_cols=71 Identities=20% Similarity=0.298 Sum_probs=42.2
Q ss_pred CCCCCCeeEeccccCCCCCCCCCCCCCCCCCChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCceeEEEEEeCc
Q 040106 97 RPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFRE 176 (324)
Q Consensus 97 ~P~~S~tLlL~NMy~~p~~~~~~~d~~~~eld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G~vyV~F~s 176 (324)
.|.+..--+|.|+++-+.. . .+...+.+...+||+|..|.+- +.-+|...+
T Consensus 10 PPgP~~lPliGnl~~l~~~--------------~-------~~~~~~~~~~~kYG~i~~~~~g--------~~~~vvv~~ 60 (494)
T 3swz_A 10 PKSLLSLPLVGSLPFLPRH--------------G-------HMHNNFFKLQKKYGPIYSVRMG--------TKTTVIVGH 60 (494)
T ss_dssp --CCBCCCEEEEESSCTTS--------------S-------CHHHHHHHTHHHHCSEEEEEET--------TEEEEEECS
T ss_pred CCCCCCCCeEcchHHhCCC--------------C-------chhHHHHHHHHHcCCEEEEEeC--------CCCEEEECC
Confidence 3455556789999864320 0 0112344445689999998873 234555678
Q ss_pred HHHHHHHHHHhcCCeeCCeEE
Q 040106 177 EEQAAAALHALQGRFYSGRPI 197 (324)
Q Consensus 177 ~edA~~Ai~~LnGR~f~GR~I 197 (324)
.+.|..++.. ++..|.+|+.
T Consensus 61 p~~~k~il~~-~~~~f~~rp~ 80 (494)
T 3swz_A 61 HQLAKEVLIK-KGKDFSGRPQ 80 (494)
T ss_dssp HHHHHHHHTT-TTTTTBBCCC
T ss_pred HHHHHHHHHh-CcHhhCCCCC
Confidence 8888777643 5566666654
No 253
>3fmb_A Dimeric protein of unknown function and ferredoxi fold; YP_212648.1, stress responsive A/B barrel domain; HET: MSE; 1.85A {Bacteroides fragilis}
Probab=24.69 E-value=2.5e+02 Score=22.06 Aligned_cols=53 Identities=17% Similarity=0.154 Sum_probs=32.5
Q ss_pred CChhHHHhhHHhHHHHHHHHHhccCCeeEEEEeeCCCCCcee---EEEEEeCcHHHH
Q 040106 127 IDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIG---NVYVQFREEEQA 180 (324)
Q Consensus 127 ld~eel~~~fd~~~eDV~eEf~kfG~I~~V~V~~n~~~~~~G---~vyV~F~s~edA 180 (324)
.++++.++..+.+.+.+...-.+.-.|.++.+-.|.+. ..| ..+++|++.++-
T Consensus 33 ~~~~~~~~~~~~~~~~l~~L~~~IP~i~~~~vG~~~s~-~~~yd~~l~~~F~s~e~l 88 (118)
T 3fmb_A 33 VPVEEKLVVMNSFKEAIEALPAKISVIRKIEVGLNMNP-GETWNIALYSEFDNLDDV 88 (118)
T ss_dssp SCHHHHHHHHHHHHHHHHTGGGTCTTCSEEEEEECCCT-TCCCCEEEEEEESSHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhccCCCeEEEEEeccCCC-CCCceEEEEEEECCHHHH
Confidence 34555554445555555444466777999999766431 234 477889888753
No 254
>2kzf_A RBFA, ribosome-binding factor A; JCSG, joint center structural genomics, PSI-biology, protein structure initiative; NMR {Thermotoga maritima}
Probab=20.89 E-value=79 Score=24.76 Aligned_cols=36 Identities=19% Similarity=0.348 Sum_probs=23.9
Q ss_pred cCCeeEEEEeeCCCCCceeEEEEEeCc-HHHHHHHHHHhc
Q 040106 150 FGEIECLNVCDNLADHMIGNVYVQFRE-EEQAAAALHALQ 188 (324)
Q Consensus 150 fG~I~~V~V~~n~~~~~~G~vyV~F~s-~edA~~Ai~~Ln 188 (324)
+=.|..|.|..+. ..-.|||.+-. .++...++++|+
T Consensus 35 ~vtVt~V~vs~Dl---~~AkVyvs~~g~~~~~~~~~~~L~ 71 (106)
T 2kzf_A 35 FVTFSRVELSKDK---RYADVYVSFLGTPEERKETVEILN 71 (106)
T ss_dssp GCCEEEEEECTTS---CEEEEEECCSSCHHHHHHHHHHHH
T ss_pred ceEEEEEEECCCC---CEEEEEEEeCCChhhHHHHHHHHH
Confidence 3477788886653 46789998763 555566666665
Done!