Citrus Sinensis ID: 040106


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320----
MAHTQTNVRTKERKKKKKRFLREGKREEVCVWIDKLSEIPFPSQDKDSAVKFAGRGLAMAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQAAAALHALQGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDLRNKLFGRYRRRSRSRSFSPIPHLRSRHRRDGDRDYRRSYRDRDYERSRRTHSRSSTSSRSRTPVREGSEERRAKIEQWNREREENQ
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHcccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccccEEEEEEccHHHHHHHHHHHHccccccccEEEEEcccccccccHHcccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcc
***************************EVCVWIDKLSEIPF***************LA**E*LASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQAAAALHALQGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDLRNKLFGRY******************************************************************************
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MAHTQTNVRTKERKKKKKRFLREGKREEVCVWIDKLSEIPFPSQDKDSAVKFAGRGLAMAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIFEELSKFGEIECLNVCDNLADHMIGNVYVQFREEEQAAAALHALQGRFYSGRPIIVEFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRDLRNKLFGRYRRRSRSRSFSPIPHLRSRHRRDGDRDYRRSYRDRDYERSRRTHSRSSTSSRSRTPVREGSEERRAKIEQWNREREENQ

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Splicing factor U2af small subunit B Necessary for the splicing of pre-mRNA.confidentQ9FMY5
Splicing factor U2af small subunit B Necessary for the splicing of pre-mRNA.probableQ6AUG0
Splicing factor U2af small subunit A Necessary for the splicing of pre-mRNA.probableQ9ZQW8

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 1JMT, chain A
Confidence level:very confident
Coverage over the Query: 101-203
View the alignment between query and template
View the model in PyMOL
Template: 2GHP, chain A
Confidence level:very confident
Coverage over the Query: 54-114,140-204
View the alignment between query and template
View the model in PyMOL
Template: 3SMZ, chain A
Confidence level:confident
Coverage over the Query: 19-82,93-114,128,140-209
View the alignment between query and template
View the model in PyMOL
Template: 2D9N, chain A
Confidence level:probable
Coverage over the Query: 205-234
View the alignment between query and template
View the model in PyMOL