BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040109
(598 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 133/457 (29%), Positives = 187/457 (40%), Gaps = 57/457 (12%)
Query: 87 LDLRALS--DSPVDALKGTINPSLLKLQ-HLTYLDLSWNNFSGSPIPEFI-GXXXXXXXX 142
L +R L D + G + SL L L LDLS NNFSG +P
Sbjct: 340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399
Query: 143 XXXXXXXXGPIPHQLGNLSRLQVLDLRFNNLFSSGNXXXXXXXXXXXXXXXGDCKLSKFS 202
G IP L N S L L L FN L SG KL
Sbjct: 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYL--SGTIPSSLGSLS---------KLRDLK 448
Query: 203 NWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNV 262
W +L ++P L Y K+LE + L N LT I L N
Sbjct: 449 LWLNMLEG------------EIPQ-------ELMYVKTLETLILDFNDLTGEIPSGLSNC 489
Query: 263 SSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLR-EVPKFLGNMSSLKMLVLSY 321
++ ++ I L +NRL G IP G + +L L L +N +P LG+ SL L L+
Sbjct: 490 TN--LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547
Query: 322 NELRGEL--SEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGG---FPGM----LMPL 372
N G + + F Q+ + + ++Y+ ++ + G F G+ L L
Sbjct: 548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607
Query: 373 IYFDKITVT---WKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNN 429
+ +T + G G + +D+S N L G +P+EI + L LNL +N+
Sbjct: 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 667
Query: 430 LTGQITPRIGQLKSLDFLDLSINHFFGGIPXXXXXXXXXXVMDLSYNNFSGKIPKGTQLQ 489
++G I +G L+ L+ LDLS N G IP +DLS NN SG IP+ Q +
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 727
Query: 490 RFGASTYAGNPELCGLPLPNKCLDEESAPSPSRDDAY 526
F + + NP LCG PLP +C PS D Y
Sbjct: 728 TFPPAKFLNNPGLCGYPLP-RC-------DPSNADGY 756
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 155/591 (26%), Positives = 226/591 (38%), Gaps = 132/591 (22%)
Query: 20 FQLEPTVANSNNIISCLDEEKEALLAFKQGLIDESGILSSWGREDEKRNCCKWRGVRCSN 79
FQ P+ + L E L++FK L D++ +L W +N C + GV C
Sbjct: 2 FQASPSQS--------LYREIHQLISFKDVLPDKN-LLPDW---SSNKNPCTFDGVTC-- 47
Query: 80 KTGHVLGLDLRA------------------------LSDSPVDALKGTINPSLLKLQHLT 115
+ V +DL + LS+S ++ S LT
Sbjct: 48 RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCS----ASLT 103
Query: 116 YLDLSWNNFSGSPIPEFIGXXXXXXXXXXXXXXXXGPIPHQLG---NLSRLQVLDLRFNN 172
LDLS N+ SG P+ P ++ L+ L+VLDL N+
Sbjct: 104 SLDLSRNSLSG-PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162
Query: 173 LFS--------SGNXXXXXXXXXXXXXXXGDCKLSKFSN--WFQVLSNLRSLTTLYLGHC 222
+ S GD +S+ N + V SN S +LG C
Sbjct: 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDC 222
Query: 223 DL----------------PPISTPSLLH-LNYS-------------KSLEVIDLSNNYLT 252
IST + L LN S KSL+ + L+ N T
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFT 282
Query: 253 NSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLR-EVP-KFLGN 310
I P L+ + + + +DL N +G++P FG + L L L SN E+P L
Sbjct: 283 GEI-PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341
Query: 311 MSSLKMLVLSYNELRGELSEFIQNVSSG------STKN--------------SSLEWLYL 350
M LK+L LS+NE GEL E + N+S+ S+ N ++L+ LYL
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401
Query: 351 ASNEITGTIPNL------------------GGFPGMLMPLIYFDKITVTWKGGQYEYKSI 392
+N TG IP G P L L + + + E
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461
Query: 393 LGLIKIID---LSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDL 449
L +K ++ L N L GE+P + + L ++LSNN LTG+I IG+L++L L L
Sbjct: 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521
Query: 450 SINHFFGGIPXXXXXXXXXXVMDLSYNNFSGKIPKG--TQLQRFGASTYAG 498
S N F G IP +DL+ N F+G IP Q + A+ AG
Sbjct: 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 79 NKTGHVLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEF 132
++ G + GL++ LS + +D G I ++ L LT +DLS NN SG PIPE
Sbjct: 674 DEVGDLRGLNILDLSSNKLD---GRIPQAMSALTMLTEIDLSNNNLSG-PIPEM 723
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 133/457 (29%), Positives = 187/457 (40%), Gaps = 57/457 (12%)
Query: 87 LDLRALS--DSPVDALKGTINPSLLKLQ-HLTYLDLSWNNFSGSPIPEFI-GXXXXXXXX 142
L +R L D + G + SL L L LDLS NNFSG +P
Sbjct: 337 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 396
Query: 143 XXXXXXXXGPIPHQLGNLSRLQVLDLRFNNLFSSGNXXXXXXXXXXXXXXXGDCKLSKFS 202
G IP L N S L L L FN L SG KL
Sbjct: 397 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYL--SGTIPSSLGSLS---------KLRDLK 445
Query: 203 NWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNV 262
W +L ++P L Y K+LE + L N LT I L N
Sbjct: 446 LWLNMLEG------------EIPQ-------ELMYVKTLETLILDFNDLTGEIPSGLSNC 486
Query: 263 SSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLR-EVPKFLGNMSSLKMLVLSY 321
++ ++ I L +NRL G IP G + +L L L +N +P LG+ SL L L+
Sbjct: 487 TN--LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 544
Query: 322 NELRGEL--SEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGG---FPGM----LMPL 372
N G + + F Q+ + + ++Y+ ++ + G F G+ L L
Sbjct: 545 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 604
Query: 373 IYFDKITVT---WKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNN 429
+ +T + G G + +D+S N L G +P+EI + L LNL +N+
Sbjct: 605 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 664
Query: 430 LTGQITPRIGQLKSLDFLDLSINHFFGGIPXXXXXXXXXXVMDLSYNNFSGKIPKGTQLQ 489
++G I +G L+ L+ LDLS N G IP +DLS NN SG IP+ Q +
Sbjct: 665 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 724
Query: 490 RFGASTYAGNPELCGLPLPNKCLDEESAPSPSRDDAY 526
F + + NP LCG PLP +C PS D Y
Sbjct: 725 TFPPAKFLNNPGLCGYPLP-RC-------DPSNADGY 753
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 152/575 (26%), Positives = 221/575 (38%), Gaps = 124/575 (21%)
Query: 36 LDEEKEALLAFKQGLIDESGILSSWGREDEKRNCCKWRGVRCSNKTGHVLGLDLRA---- 91
L E L++FK L D++ +L W +N C + GV C + V +DL +
Sbjct: 7 LYREIHQLISFKDVLPDKN-LLPDW---SSNKNPCTFDGVTC--RDDKVTSIDLSSKPLN 60
Query: 92 --------------------LSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPE 131
LS+S ++ S LT LDLS N+ SG P+
Sbjct: 61 VGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCS----ASLTSLDLSRNSLSG-PVTT 115
Query: 132 FIGXXXXXXXXXXXXXXXXGPIPHQLG---NLSRLQVLDLRFNNLFS--------SGNXX 180
P ++ L+ L+VLDL N++ S
Sbjct: 116 LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 175
Query: 181 XXXXXXXXXXXXXGDCKLSKFSN--WFQVLSNLRSLTTLYLGHCDL-------------- 224
GD +S+ N + V SN S +LG C
Sbjct: 176 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD 235
Query: 225 --PPISTPSLLH-LNYS-------------KSLEVIDLSNNYLTNSIYPWLLNVSSNLVD 268
IST + L LN S KSL+ + L+ N T I P L+ + + +
Sbjct: 236 FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEI-PDFLSGACDTLT 294
Query: 269 HIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLR-EVP-KFLGNMSSLKMLVLSYNELRG 326
+DL N +G++P FG + L L L SN E+P L M LK+L LS+NE G
Sbjct: 295 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 354
Query: 327 ELSEFIQNVSSG------STKN--------------SSLEWLYLASNEITGTIPNL---- 362
EL E + N+S+ S+ N ++L+ LYL +N TG IP
Sbjct: 355 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 414
Query: 363 --------------GGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIID---LSSNK 405
G P L L + + + E L +K ++ L N
Sbjct: 415 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 474
Query: 406 LGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPXXXXXX 465
L GE+P + + L ++LSNN LTG+I IG+L++L L LS N F G IP
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 534
Query: 466 XXXXVMDLSYNNFSGKIPKG--TQLQRFGASTYAG 498
+DL+ N F+G IP Q + A+ AG
Sbjct: 535 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 569
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 79 NKTGHVLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEF 132
++ G + GL++ LS + +D G I ++ L LT +DLS NN SG PIPE
Sbjct: 671 DEVGDLRGLNILDLSSNKLD---GRIPQAMSALTMLTEIDLSNNNLSG-PIPEM 720
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 110/240 (45%), Gaps = 18/240 (7%)
Query: 273 GSNRLHGSIPVAFGHMASLRYLGLL-SNRLREVPKFLGNMSSLKMLVLSYNELRGELSEF 331
G N L G IP A + L YL + +N +P FL + +L L SYN L G L
Sbjct: 85 GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144
Query: 332 IQNVSSGSTKNSSLEWLYLASNEITGTIPN-LGGFPGMLMPLIYFDKITVTWKGGQYEYK 390
I ++ + L + N I+G IP+ G F + F +T++ +
Sbjct: 145 ISSLPN-------LVGITFDGNRISGAIPDSYGSFSKL------FTSMTISRNRLTGKIP 191
Query: 391 SILGLIKI--IDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLD 448
+ + +DLS N L G+ ++L+ N+L + ++G K+L+ LD
Sbjct: 192 PTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLD 250
Query: 449 LSINHFFGGIPXXXXXXXXXXVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLPLP 508
L N +G +P +++S+NN G+IP+G LQRF S YA N LCG PLP
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 118/255 (46%), Gaps = 44/255 (17%)
Query: 207 VLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNL 266
++ L L LY+ H + +S L+ K+L +D S N L+ ++ P + ++ NL
Sbjct: 96 AIAKLTQLHYLYITHTN---VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP-NL 151
Query: 267 VDHIDLGSNRLHGSIPVAFGHMASL-RYLGLLSNRLR-EVPKFLGNMSSLKMLVLSYNEL 324
V I NR+ G+IP ++G + L + + NRL ++P N+ +L + LS N L
Sbjct: 152 VG-ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNML 209
Query: 325 RGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKG 384
G+ S GS KN+ + ++LA N + FD V
Sbjct: 210 EGDASVLF-----GSDKNT--QKIHLAKNSLA------------------FDLGKVGLS- 243
Query: 385 GQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSL 444
K++ GL DL +N++ G +P+ + L L +LN+S NNL G+I P+ G L+
Sbjct: 244 -----KNLNGL----DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRF 293
Query: 445 DFLDLSINHFFGGIP 459
D + N G P
Sbjct: 294 DVSAYANNKCLCGSP 308
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 80/168 (47%), Gaps = 31/168 (18%)
Query: 205 FQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIY----PW-- 258
FQ S L+ L TL L L +L+ N S SLE +D+S N L + Y W
Sbjct: 370 FQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS-SLETLDVSLNSLNSHAYDRTCAWAE 428
Query: 259 ---LLNVSSNL------------VDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLRE 303
+LN+SSN+ V +DL +NR+ SIP H+ +L+ L + SN+L+
Sbjct: 429 SILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLKS 487
Query: 304 VPK-FLGNMSSLKMLVLSYNELRGE------LSEFIQNVSSGSTKNSS 344
VP ++SL+ + L N LSE+I N SG +NS+
Sbjct: 488 VPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWI-NKHSGVVRNSA 534
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 56/103 (54%), Gaps = 14/103 (13%)
Query: 237 YSKSLEVIDLSNNYLTN-SIYPWLLNVSSNLVDHIDLGSNRLHGSIPVA--FGHMASLRY 293
+++ LE +D+S+N L N S P + H+DL N +PV FG++ L +
Sbjct: 98 FNQDLEYLDVSHNRLQNISCCPM------ASLRHLDLSFNDF-DVLPVCKEFGNLTKLTF 150
Query: 294 LGLLSNRLRE---VPKFLGNMSSLKMLVLSYNELRGELSEFIQ 333
LGL + + R+ +P ++S + + ++SY+ ++G +E +Q
Sbjct: 151 LGLSAAKFRQLDLLPVAHLHLSCILLDLVSYH-IKGGETESLQ 192
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 49/172 (28%)
Query: 269 HIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPK---FLGNMSSLKML-----VLS 320
H+D +N L ++ GH+ L L L N+L+E+ K M SL+ L +S
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 321 YNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITV 380
Y+E +G+ S SL L ++SN +T TI
Sbjct: 388 YDEKKGDCSW-----------TKSLLSLNMSSNILTDTI--------------------- 415
Query: 381 TWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTG 432
++ + IK++DL SNK+ +P++++ L L LN+++N L
Sbjct: 416 --------FRCLPPRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKS 458
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 236 NYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLG 295
+++KSL +++S+N LT++I+ L + +DL SN++ SIP + +L+ L
Sbjct: 396 SWTKSLLSLNMSSNILTDTIFRCL----PPRIKVLDLHSNKI-KSIPKQVVKLEALQELN 450
Query: 296 LLSNRLREVPK-FLGNMSSLKMLVLSYN 322
+ SN+L+ VP ++SL+ + L N
Sbjct: 451 VASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 10/70 (14%)
Query: 237 YSKSLEVIDLSNNYLTN-SIYPWLLNVSSNLVDHIDLGSNRLHGSIPVA--FGHMASLRY 293
+++ LE +DLS+N L S +P + NL H+DL N ++P+ FG+M+ L++
Sbjct: 67 FNQELEYLDLSHNKLVKISCHP-----TVNL-KHLDLSFNAF-DALPICKEFGNMSQLKF 119
Query: 294 LGLLSNRLRE 303
LGL + L +
Sbjct: 120 LGLSTTHLEK 129
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 240 SLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSN 299
SLEV+ ++ N + P + NL +DL +L P AF ++SL+ L + SN
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLT-FLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504
Query: 300 RLREVPK-FLGNMSSLKMLVLSYN 322
+L+ VP ++SL+ + L N
Sbjct: 505 QLKSVPDGIFDRLTSLQKIWLHTN 528
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 85/191 (44%), Gaps = 43/191 (22%)
Query: 196 CKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTN-- 253
C++SK ++ +V + R LT L PP + K ++ LS N L
Sbjct: 4 CEVSKVASHLEVNCDKRQLTAL-------PP---------DLPKDTTILHLSENLLYTFS 47
Query: 254 --SIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNM 311
++ P+ NL D +L ++ G++PV L L L N+L+ +P +
Sbjct: 48 LATLMPYTRLTQLNL-DRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTL 99
Query: 312 SSLKMLVLSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLASNEITGTIPNLGGFPGMLM 370
+L +L +S+N L ++ G+ + L+ LYL NE+ T+P PG+L
Sbjct: 100 PALTVLDVSFNRLT--------SLPLGALRGLGELQELYLKGNELK-TLP-----PGLLT 145
Query: 371 PLIYFDKITVT 381
P +K+++
Sbjct: 146 PTPKLEKLSLA 156
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 43/191 (22%)
Query: 196 CKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTN-- 253
C++SK ++ +V + R+LT L PP + K ++ LS N L
Sbjct: 4 CEVSKVASHLEVNCDKRNLTAL-------PP---------DLPKDTTILHLSENLLYTFS 47
Query: 254 --SIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNM 311
++ P+ NL D +L ++ G++PV L L L N+L+ +P +
Sbjct: 48 LATLMPYTRLTQLNL-DRAELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTL 99
Query: 312 SSLKMLVLSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLASNEITGTIPNLGGFPGMLM 370
+L +L +S+N L ++ G+ + L+ LYL NE+ T+P PG+L
Sbjct: 100 PALTVLDVSFNRL--------TSLPLGALRGLGELQELYLKGNELK-TLP-----PGLLT 145
Query: 371 PLIYFDKITVT 381
P +K+++
Sbjct: 146 PTPKLEKLSLA 156
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 85/191 (44%), Gaps = 43/191 (22%)
Query: 196 CKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTN-- 253
C++SK ++ +V + R LT L PP + K ++ LS N L
Sbjct: 4 CEVSKVASHLEVNCDKRDLTAL-------PP---------DLPKDTTILHLSENLLYTFS 47
Query: 254 --SIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNM 311
++ P+ NL D +L ++ G++PV L L L N+L+ +P +
Sbjct: 48 LATLMPYTRLTQLNL-DRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTL 99
Query: 312 SSLKMLVLSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLASNEITGTIPNLGGFPGMLM 370
+L +L +S+N L ++ G+ + L+ LYL NE+ T+P PG+L
Sbjct: 100 PALTVLDVSFNRL--------TSLPLGALRGLGELQELYLKGNELK-TLP-----PGLLT 145
Query: 371 PLIYFDKITVT 381
P +K+++
Sbjct: 146 PTPKLEKLSLA 156
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 85/191 (44%), Gaps = 43/191 (22%)
Query: 196 CKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTN-- 253
C++SK ++ +V + R LT L PP + K ++ LS N L
Sbjct: 4 CEVSKVASHLEVNCDKRQLTAL-------PP---------DLPKDTTILHLSENLLYTFS 47
Query: 254 --SIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNM 311
++ P+ NL D +L ++ G++PV L L L N+L+ +P +
Sbjct: 48 LATLMPYTRLTQLNL-DRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTL 99
Query: 312 SSLKMLVLSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLASNEITGTIPNLGGFPGMLM 370
+L +L +S+N L ++ G+ + L+ LYL NE+ T+P PG+L
Sbjct: 100 PALTVLDVSFNRLT--------SLPLGALRGLGELQELYLKGNELK-TLP-----PGLLT 145
Query: 371 PLIYFDKITVT 381
P +K+++
Sbjct: 146 PTPKLEKLSLA 156
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 43/191 (22%)
Query: 196 CKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTN-- 253
C++SK ++ +V + R+LT L PP + K ++ LS N L
Sbjct: 4 CEVSKVASHLEVNCDKRNLTAL-------PP---------DLPKDTTILHLSENLLYTFS 47
Query: 254 --SIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNM 311
++ P+ NL D +L ++ G++PV L L L N+L+ +P +
Sbjct: 48 LATLMPYTRLTQLNL-DRAELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTL 99
Query: 312 SSLKMLVLSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLASNEITGTIPNLGGFPGMLM 370
+L +L +S+N L ++ G+ + L+ LYL NE+ T+P PG+L
Sbjct: 100 PALTVLDVSFNRL--------TSLPLGALRGLGELQELYLKGNELK-TLP-----PGLLT 145
Query: 371 PLIYFDKITVT 381
P +K+++
Sbjct: 146 PTPKLEKLSLA 156
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 43/191 (22%)
Query: 196 CKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTN-- 253
C++SK ++ +V + R+LT L PP + K ++ LS N L
Sbjct: 5 CEVSKVASHLEVNCDKRNLTAL-------PP---------DLPKDTTILHLSENLLYTFS 48
Query: 254 --SIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNM 311
++ P+ NL D +L ++ G++PV L L L N+L+ +P +
Sbjct: 49 LATLMPYTRLTQLNL-DRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTL 100
Query: 312 SSLKMLVLSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLASNEITGTIPNLGGFPGMLM 370
+L +L +S+N L ++ G+ + L+ LYL NE+ T+P PG+L
Sbjct: 101 PALTVLDVSFNRL--------TSLPLGALRGLGELQELYLKGNELK-TLP-----PGLLT 146
Query: 371 PLIYFDKITVT 381
P +K+++
Sbjct: 147 PTPKLEKLSLA 157
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 43/191 (22%)
Query: 196 CKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTN-- 253
C++SK ++ +V + R+LT L PP + K ++ LS N L
Sbjct: 4 CEVSKVASHLEVNCDKRNLTAL-------PP---------DLPKDTTILHLSENLLYTFS 47
Query: 254 --SIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNM 311
++ P+ NL D +L ++ G++PV L L L N+L+ +P +
Sbjct: 48 LATLMPYTRLTQLNL-DRAELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTL 99
Query: 312 SSLKMLVLSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLASNEITGTIPNLGGFPGMLM 370
+L +L +S+N L ++ G+ + L+ LYL NE+ T+P PG+L
Sbjct: 100 PALTVLDVSFNRL--------TSLPLGALRGLGELQELYLKGNELK-TLP-----PGLLT 145
Query: 371 PLIYFDKITVT 381
P +K+++
Sbjct: 146 PTPKLEKLSLA 156
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 85/191 (44%), Gaps = 43/191 (22%)
Query: 196 CKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTN-- 253
C++SK ++ +V + R LT L PP + K ++ LS N L
Sbjct: 4 CEVSKVASHLEVNCDKRDLTAL-------PP---------DLPKDTTILHLSENLLYTFS 47
Query: 254 --SIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNM 311
++ P+ NL D +L ++ G++PV L L L N+L+ +P +
Sbjct: 48 LATLMPYTRLTQLNL-DRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTL 99
Query: 312 SSLKMLVLSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLASNEITGTIPNLGGFPGMLM 370
+L +L +S+N L ++ G+ + L+ LYL NE+ T+P PG+L
Sbjct: 100 PALTVLDVSFNRL--------TSLPLGALRGLGELQELYLKGNELK-TLP-----PGLLT 145
Query: 371 PLIYFDKITVT 381
P +K+++
Sbjct: 146 PTPKLEKLSLA 156
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 85/191 (44%), Gaps = 43/191 (22%)
Query: 196 CKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTN-- 253
C++SK ++ +V + R LT L PP + K ++ LS N L
Sbjct: 4 CEVSKVASHLEVNCDKRQLTAL-------PP---------DLPKDTTILHLSENLLYTFS 47
Query: 254 --SIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNM 311
++ P+ NL D +L ++ G++PV L L L N+L+ +P +
Sbjct: 48 LATLMPYTRLTQLNL-DRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTL 99
Query: 312 SSLKMLVLSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLASNEITGTIPNLGGFPGMLM 370
+L +L +S+N L ++ G+ + L+ LYL NE+ T+P PG+L
Sbjct: 100 PALTVLDVSFNRL--------TSLPLGALRGLGELQELYLKGNELK-TLP-----PGLLT 145
Query: 371 PLIYFDKITVT 381
P +K+++
Sbjct: 146 PTPKLEKLSLA 156
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 113/246 (45%), Gaps = 33/246 (13%)
Query: 199 SKFSNWFQVLSNLRSLTT--------LYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNY 250
++FS V NLR + L L + I S HL + LE++ LS N+
Sbjct: 43 NQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHL---RHLEILQLSRNH 99
Query: 251 LTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGN 310
+ +I N +NL + ++L NRL AF +++ L+ L L +N + +P + N
Sbjct: 100 I-RTIEIGAFNGLANL-NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFN 157
Query: 311 -MSSLKMLVLSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLASNEITGTIPNLGGFPGM 368
+ SL+ L L GEL + +S G+ + S+L +L LA + NL P
Sbjct: 158 RIPSLRRLDL------GELKR-LSYISEGAFEGLSNLRYLNLA-------MCNLREIPN- 202
Query: 369 LMPLIYFDKITVTWKG-GQYEYKSILGLIKIIDLSSNKLGGEVPEE--IMDLVGLVALNL 425
L PLI D++ ++ S GL+ + L + +V E +L LV +NL
Sbjct: 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINL 262
Query: 426 SNNNLT 431
++NNLT
Sbjct: 263 AHNNLT 268
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 85/191 (44%), Gaps = 43/191 (22%)
Query: 196 CKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTN-- 253
C++SK ++ +V + R LT L PP + K ++ LS N L
Sbjct: 4 CEVSKVASHLEVNCDKRQLTAL-------PP---------DLPKDTTILHLSENLLYTFS 47
Query: 254 --SIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNM 311
++ P+ NL D +L ++ G++PV L L L N+L+ +P +
Sbjct: 48 LATLMPYTRLTQLNL-DRCELTKLQVDGTLPV-------LGTLDLSHNQLQSLPLLGQTL 99
Query: 312 SSLKMLVLSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLASNEITGTIPNLGGFPGMLM 370
+L +L +S+N L ++ G+ + L+ LYL NE+ T+P PG+L
Sbjct: 100 PALTVLDVSFNRLT--------SLPLGALRGLGELQELYLKGNELK-TLP-----PGLLT 145
Query: 371 PLIYFDKITVT 381
P +K+++
Sbjct: 146 PTPKLEKLSLA 156
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 98/252 (38%), Gaps = 35/252 (13%)
Query: 74 GVRCSNKTGHVLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFI 133
G RC K ++ LDL S S ++A N L L+HL YL+LS+N G F
Sbjct: 341 GTRCLEKLENLQKLDL---SHSDIEA-SDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAF- 395
Query: 134 GXXXXXXXXXXXXXXXXGPIPHQLGNLSRLQVLDLRFNNLFSSGNXXXXXXXXXXXXXXX 193
+L++LD+ F +L
Sbjct: 396 ------------------------KECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNL 431
Query: 194 GDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTN 253
C L SN +L+ L+ L L L S L SLE++ LS+ L
Sbjct: 432 SHCLLDT-SNQ-HLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLL- 488
Query: 254 SIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREV-PKFLGNMS 312
SI + N V+H+DL N L G A H+ L YL + SN +R + P L +S
Sbjct: 489 SIDQQAFHGLRN-VNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALS 546
Query: 313 SLKMLVLSYNEL 324
++ LS+N L
Sbjct: 547 QQSIINLSHNPL 558
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 245 DLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREV 304
D + YLT++ + L ++S V+ I+L +R F ++ L L + L +
Sbjct: 236 DTDDQYLTSATFEGLCDMS---VESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGL 292
Query: 305 PKFLGNMSSLKMLVLSYN 322
P + M+SLK LVL+ N
Sbjct: 293 PSGIEGMNSLKKLVLNAN 310
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 270 IDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELR 325
+DLG+N+L F + L+ L + N+L E+P+ + ++ L L L N+L+
Sbjct: 93 LDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 49/173 (28%)
Query: 243 VIDLSNNYLTNSIYPW----LLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLS 298
++DLS+N L+ W L N+ S L+ H N L+ AF + +LRYL L S
Sbjct: 43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSH-----NHLNFISSEAFVPVPNLRYLDLSS 97
Query: 299 NRLREVPKFL-GNMSSLKMLVLSYNEL----RGELSEFIQNVSSGSTKNSSLEWLYLASN 353
N L + +FL ++ +L++L+L N + R + Q L+ LYL+ N
Sbjct: 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ-----------LQKLYLSQN 146
Query: 354 EITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKL 406
+I+ FP L+ K G + L + ++DLSSNKL
Sbjct: 147 QIS-------RFPVELI------------KDG-----NKLPKLMLLDLSSNKL 175
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 12/117 (10%)
Query: 240 SLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSN 299
L ++ L +N LT++ WLLN LV+ +DL N L + F M L L + +N
Sbjct: 227 ELTILKLQHNNLTDT--AWLLNYPG-LVE-VDLSYNELEKIMYHPFVKMQRLERLYISNN 282
Query: 300 RLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEIT 356
RL + + + +LK+L LS+N L +V + LE LYL N I
Sbjct: 283 RLVALNLYGQPIPTLKVLDLSHNHLL--------HVERNQPQFDRLENLYLDHNSIV 331
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 8/123 (6%)
Query: 240 SLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSN 299
SLEV+ ++ N + P + NL +DL +L P AF ++SL+ L + N
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFTELRNLT-FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
Query: 300 RLREVPKF-LGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGT 358
+ F ++SL++L S N + + +Q+ SSL +L L N+ T
Sbjct: 210 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP------SSLAFLNLTQNDFACT 263
Query: 359 IPN 361
+
Sbjct: 264 CEH 266
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%)
Query: 396 IKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINH 453
+ +DLS +L P L L LN+S+NN T L SL LD S+NH
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 236 NYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLG 295
NY K L +IDLSNN ++ N++ L + L NRL P F + SLR L
Sbjct: 52 NY-KHLTLIDLSNNRISTLSNQSFSNMTQLLT--LILSYNRLRCIPPRTFDGLKSLRLLS 108
Query: 296 LLSNRLREVPK-FLGNMSSLKMLVLSYNEL 324
L N + VP+ ++S+L L + N L
Sbjct: 109 LHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 12/116 (10%)
Query: 240 SLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSN 299
L ++ L +N LT++ WLLN LV+ +DL N L + F M L L + +N
Sbjct: 233 ELTILKLQHNNLTDT--AWLLNYPG-LVE-VDLSYNELEKIMYHPFVKMQRLERLYISNN 288
Query: 300 RLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEI 355
RL + + + +LK+L LS+N L +V + LE LYL N I
Sbjct: 289 RLVALNLYGQPIPTLKVLDLSHNHLL--------HVERNQPQFDRLENLYLDHNSI 336
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 267 VDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPK-FLGNMSSLKMLVLSYN 322
++ I+ GSN+L FG M L+ L L SN+L+ VP ++SL+ + L N
Sbjct: 172 LESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 94/207 (45%), Gaps = 27/207 (13%)
Query: 267 VDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVP--KFLGNMSSLKMLVLSYNEL 324
++ ++L N + P AF ++ +LR LGL SNRL+ +P F G +S+L L +S N++
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTG-LSNLTKLDISENKI 116
Query: 325 RGELSEFIQNVSSGSTKN-----------------SSLEWLYLASNEITGTIPN--LGGF 365
L Q++ + + +SLE L L +T +IP L
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHL 175
Query: 366 PGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNL 425
G+++ + I Y +K + L K++++S + + + L +L++
Sbjct: 176 HGLIVLRLRHLNINAI---RDYSFKRLYRL-KVLEISHWPYLDTMTPNCLYGLNLTSLSI 231
Query: 426 SNNNLTGQITPRIGQLKSLDFLDLSIN 452
++ NLT + L L FL+LS N
Sbjct: 232 THCNLTAVPYLAVRHLVYLRFLNLSYN 258
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 272 LGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPK-FLGNMSSLKMLVLSYNELR 325
LG N+L F + SL YL L +N+L+ +P ++ LK L L+ N+L+
Sbjct: 59 LGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ 113
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 269 HIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPK-FLGNMSSLKMLVLSYNELRGE 327
+++L +N+L F + L+ L L +N+L+ +P ++ LK L L N+L+
Sbjct: 80 YLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV 139
Query: 328 LSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNL 362
+ +SL++++L N T P +
Sbjct: 140 PDGVFDRL-------TSLQYIWLHDNPWDCTCPGI 167
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 240 SLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSN 299
+L + L N L S+ P + + + L ++ LG N L F + SL+ L L +N
Sbjct: 110 NLAELRLDRNQL-KSLPPRVFDSLTKLT-YLSLGYNELQSLPKGVFDKLTSLKELRLYNN 167
Query: 300 RLREVPK-FLGNMSSLKMLVLSYNELR 325
+L+ VP+ ++ LK L L N+L+
Sbjct: 168 QLKRVPEGAFDKLTELKTLKLDNNQLK 194
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 78/199 (39%), Gaps = 39/199 (19%)
Query: 269 HIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPK-FLGNMSSLKMLVLSYNELRG- 326
+DL SN+L AF + LR L L N+L+ +P + +L+ L ++ N+L+
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 327 ELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIP------------NLGGFPGMLMPLIY 374
+ F Q V +L L L N++ P +LG +P
Sbjct: 101 PIGVFDQLV--------NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV 152
Query: 375 FDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMD-LVGLVALNLSNNNLTGQ 433
FDK+T +K + L +N+L VPE D L L L L NN L
Sbjct: 153 FDKLTS---------------LKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKRV 196
Query: 434 ITPRIGQLKSLDFLDLSIN 452
L+ L L L N
Sbjct: 197 PEGAFDSLEKLKMLQLQEN 215
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 5/136 (3%)
Query: 214 LTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLG 273
L L L + L P T L + S++ + L+NN L + + + +DL
Sbjct: 197 LFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLS 256
Query: 274 SNRLHGSIPVAFGHMASLRYLGLLSNRLREV-PKFLGNMSSLKMLVLSYNELRGELSEFI 332
N LH +F ++ SLRYL L N ++ + P+ +S+L+ L L R + +
Sbjct: 257 YNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLK----RAFTKQSV 312
Query: 333 QNVSSGSTKNSSLEWL 348
S + + S +WL
Sbjct: 313 SLASHPNIDDFSFQWL 328
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 275 NRLHGSIPVAFGHMASLRYLGLLSNRLREVP-KFLGNMSSLKMLVLSYNELR 325
N+L G +P AFG L L L N++ E+P F G ++ L ++N+L+
Sbjct: 340 NQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK 390
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 62/153 (40%), Gaps = 17/153 (11%)
Query: 286 GHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSL 345
G + Y+G + + V L L L YN+L G+L F + S
Sbjct: 304 GEKIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLAS------ 357
Query: 346 EWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNK 405
L LA N+IT N GF + L F + + ++ KS+ + ID S N+
Sbjct: 358 --LNLAYNQITEIPANFCGFTEQVENL-SFAHNKLKYIPNIFDAKSV-SVXSAIDFSYNE 413
Query: 406 LGGEVPEEIMDL-------VGLVALNLSNNNLT 431
+G + L + + ++NLSNN ++
Sbjct: 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 272 LGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPK-FLGNMSSLKMLVLSYNELRG 326
L N+L F + +L YL L N+L+ +PK +++L L LSYN+L+
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 16/147 (10%)
Query: 205 FQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSS 264
F L+NL+ L + LP L +L Y ++L++N L S+ + + +
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY------LNLAHNQL-QSLPKGVFDKLT 157
Query: 265 NLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPK-FLGNMSSLKMLVLSYNE 323
NL + +DL N+L F + L+ L L N+L+ VP ++SL+ + L N
Sbjct: 158 NLTE-LDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216
Query: 324 LRGE------LSEFIQNVSSGSTKNSS 344
LSE+I N SG +NS+
Sbjct: 217 WDCTCPGIRYLSEWI-NKHSGVVRNSA 242
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 270 IDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGEL 328
+DL NRL S+P G L+Y N + +P GN+ +L+ L + N L +
Sbjct: 275 LDLSHNRL-TSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQF 332
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 259 LLNVSSNLVDHIDLGSNRLHGS----IPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSL 314
+ N+S+N+ + L L+G+ +P ++++LR L L NRL +P LG+ L
Sbjct: 236 IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQL 295
Query: 315 K 315
K
Sbjct: 296 K 296
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 240 SLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSN 299
L I+ SNN +T+ S V+ I L SNRL F + SL+ L L SN
Sbjct: 58 QLRKINFSNNKITDIEEGAFEGASG--VNEILLTSNRLENVQHKMFKGLESLKTLMLRSN 115
Query: 300 RLREV--PKFLGNMSSLKMLVLSYNEL 324
R+ V F+G +SS+++L L N++
Sbjct: 116 RITCVGNDSFIG-LSSVRLLSLYDNQI 141
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 19/114 (16%)
Query: 218 YLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRL 277
Y+GH DL + +L L S+ + I+ Y S+ +H+DL N L
Sbjct: 66 YIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSL------------EHLDLSDNHL 112
Query: 278 HGSIPVAFGHMASLRYLGLLSNRLRE--VPKFLGNMSSLKML----VLSYNELR 325
FG ++SL+YL L+ N + V N+++L+ L V +++E+R
Sbjct: 113 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 166
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 88/218 (40%), Gaps = 40/218 (18%)
Query: 240 SLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVA--FGHMASLRYLGLL 297
SLE +DLS N L+ + + + ++DL N G I ++ F + L +L
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN---GVITMSSNFLGLEQLEHLDFQ 404
Query: 298 SNRLREVPKF--LGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEI 355
+ L+++ +F ++ +L L +S+ R + +SS LE L +A N
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-------LEVLKMAGN-- 455
Query: 356 TGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIM 415
F +P I+ + +T+ +DLS +L P
Sbjct: 456 --------SFQENFLPDIFTELRNLTF----------------LDLSQCQLEQLSPTAFN 491
Query: 416 DLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINH 453
L L LN+S+NN T L SL LD S+NH
Sbjct: 492 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%)
Query: 396 IKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINH 453
+ +DLS +L P L L LN+S+NN T L SL LD S+NH
Sbjct: 496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 553
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 19/114 (16%)
Query: 218 YLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRL 277
Y+GH DL + +L L S+ + I+ Y S+ +H+DL N L
Sbjct: 40 YIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSL------------EHLDLSDNHL 86
Query: 278 HGSIPVAFGHMASLRYLGLLSNRLRE--VPKFLGNMSSLKML----VLSYNELR 325
FG ++SL+YL L+ N + V N+++L+ L V +++E+R
Sbjct: 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 209 SNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVD 268
+ R LT L + D + T S + L + L+NN L + P + +D
Sbjct: 53 ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS--LPLGVFDHLTQLD 110
Query: 269 HIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPK-FLGNMSSLKMLVLSYNELR 325
+ LG N+L F + L+ L L +N+L+ +P +++L+ L LS N+L+
Sbjct: 111 KLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 209 SNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVD 268
+ R LT L + D + T S + L + L+NN L + P + +D
Sbjct: 53 ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS--LPLGVFDHLTQLD 110
Query: 269 HIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPK-FLGNMSSLKMLVLSYNELR 325
+ LG N+L F + L+ L L +N+L+ +P +++L+ L LS N+L+
Sbjct: 111 KLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 262 VSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREV-PKFLGNMSSLKMLVLS 320
S +++H+DL NRL S A H+ + YL L SN + + P L +S + + L
Sbjct: 497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLR 555
Query: 321 YNEL 324
N L
Sbjct: 556 QNPL 559
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 245 DLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREV 304
D+ + ++ +++ L +S V+ I+L + F + L+ L L + L E+
Sbjct: 237 DMDDEDISPAVFEGLCEMS---VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL 293
Query: 305 PKFLGNMSSLKMLVLSYNELRG 326
P L +S+LK LVLS N+
Sbjct: 294 PSGLVGLSTLKKLVLSANKFEN 315
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 266 LVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELR 325
LV H+DL NRL +P A + L L N L V + N+ L+ L+L N L+
Sbjct: 464 LVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNNRLQ 521
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 266 LVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELR 325
LV H+DL NRL +P A + L L N L V + N+ L+ L+L N L+
Sbjct: 464 LVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNNRLQ 521
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 269 HIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFL 308
IDL +N++ P AF + SL L L N++ E+PK L
Sbjct: 60 RIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 269 HIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFL 308
IDL +N++ P AF + SL L L N++ E+PK L
Sbjct: 60 RIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 56/155 (36%), Gaps = 12/155 (7%)
Query: 354 EITGTIPNLGGFPGMLMPLIYF------DKITVTWKGGQYEYKSILGLIKIIDLSSNKLG 407
E T IP+L P + F + + G + K I ++DL +N +
Sbjct: 8 ETTSGIPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDIS 67
Query: 408 GEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPXXXXXXXX 467
++ L L AL L NN ++ L+ L L +S NH P
Sbjct: 68 ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVE 127
Query: 468 XXVMDLSYNNFSGKIPKG--TQLQRFGASTYAGNP 500
+ D N K+PKG + L+ GNP
Sbjct: 128 LRIHD----NRIRKVPKGVFSGLRNMNCIEMGGNP 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,099,602
Number of Sequences: 62578
Number of extensions: 713647
Number of successful extensions: 1985
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 1657
Number of HSP's gapped (non-prelim): 230
length of query: 598
length of database: 14,973,337
effective HSP length: 104
effective length of query: 494
effective length of database: 8,465,225
effective search space: 4181821150
effective search space used: 4181821150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)