Query 040109
Match_columns 598
No_of_seqs 578 out of 5351
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 05:13:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040109.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040109hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.3E-52 2.9E-57 487.1 40.0 455 36-506 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 9.1E-38 2E-42 363.0 27.2 372 112-501 69-464 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.8E-38 3.9E-43 316.2 5.7 401 83-533 79-499 (873)
4 KOG4194 Membrane glycoprotein 100.0 7.7E-36 1.7E-40 297.5 6.9 352 100-502 72-429 (873)
5 KOG0444 Cytoskeletal regulator 100.0 7.4E-36 1.6E-40 299.3 -2.0 368 82-506 7-379 (1255)
6 KOG0472 Leucine-rich repeat pr 100.0 1.3E-34 2.9E-39 276.9 -11.7 387 84-502 70-541 (565)
7 KOG0444 Cytoskeletal regulator 100.0 4.3E-32 9.3E-37 272.4 -4.9 328 102-479 45-375 (1255)
8 KOG0618 Serine/threonine phosp 99.9 6.2E-30 1.3E-34 268.4 -1.9 363 84-502 47-489 (1081)
9 KOG0472 Leucine-rich repeat pr 99.9 2.7E-30 5.9E-35 247.5 -11.2 245 98-369 55-300 (565)
10 KOG0618 Serine/threonine phosp 99.9 9.3E-27 2E-31 244.7 -7.3 368 110-500 43-463 (1081)
11 PLN03210 Resistant to P. syrin 99.9 2.6E-22 5.6E-27 234.3 24.3 318 103-478 579-905 (1153)
12 PRK15387 E3 ubiquitin-protein 99.9 7.1E-23 1.5E-27 222.4 16.8 175 112-325 201-375 (788)
13 PRK15387 E3 ubiquitin-protein 99.9 1.2E-22 2.7E-27 220.6 17.4 263 137-484 201-463 (788)
14 PLN03210 Resistant to P. syrin 99.9 8.1E-22 1.8E-26 230.2 25.5 345 106-502 552-906 (1153)
15 KOG4237 Extracellular matrix p 99.9 1.5E-23 3.3E-28 201.2 0.7 367 84-476 69-498 (498)
16 KOG4237 Extracellular matrix p 99.8 7.5E-23 1.6E-27 196.5 -0.9 282 162-508 68-365 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 2.5E-20 5.4E-25 204.0 17.7 253 35-325 60-359 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 2.9E-19 6.3E-24 195.7 13.3 183 240-479 242-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 2E-19 4.4E-24 182.6 7.0 58 116-173 2-63 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 8.8E-19 1.9E-23 177.9 4.3 61 165-225 2-64 (319)
21 KOG0617 Ras suppressor protein 99.7 1.4E-19 3.1E-24 154.8 -5.6 153 267-480 35-187 (264)
22 PLN03150 hypothetical protein; 99.6 6.6E-16 1.4E-20 168.8 11.8 118 395-512 419-538 (623)
23 KOG0617 Ras suppressor protein 99.6 1.8E-17 4E-22 141.9 -3.8 162 239-465 33-195 (264)
24 PLN03150 hypothetical protein; 99.5 3.5E-14 7.5E-19 155.3 13.5 151 33-197 367-526 (623)
25 KOG0532 Leucine-rich repeat (L 99.3 6.9E-14 1.5E-18 141.2 -3.8 169 269-479 79-247 (722)
26 KOG0532 Leucine-rich repeat (L 99.3 4.2E-13 9.1E-18 135.6 -2.1 169 241-453 100-271 (722)
27 KOG3207 Beta-tubulin folding c 99.2 1.3E-12 2.8E-17 128.3 0.9 113 110-223 119-233 (505)
28 COG4886 Leucine-rich repeat (L 99.2 2.1E-11 4.5E-16 127.6 8.2 84 396-483 211-294 (394)
29 KOG3207 Beta-tubulin folding c 99.2 4.6E-12 1E-16 124.4 1.2 165 158-326 118-285 (505)
30 COG4886 Leucine-rich repeat (L 99.2 5E-11 1.1E-15 124.7 8.5 156 267-462 142-297 (394)
31 PF14580 LRR_9: Leucine-rich r 99.1 3.1E-11 6.7E-16 108.6 3.7 131 109-246 16-147 (175)
32 KOG1909 Ran GTPase-activating 99.1 1.6E-11 3.5E-16 117.5 1.1 231 106-356 24-283 (382)
33 KOG1909 Ran GTPase-activating 99.1 2.9E-11 6.3E-16 115.9 2.0 234 82-324 30-310 (382)
34 KOG1259 Nischarin, modulator o 99.1 1.7E-11 3.8E-16 114.6 0.1 131 287-480 282-413 (490)
35 PF14580 LRR_9: Leucine-rich r 99.0 3.9E-10 8.5E-15 101.5 5.6 34 285-318 109-146 (175)
36 KOG1259 Nischarin, modulator o 98.9 2.9E-10 6.2E-15 106.6 2.0 207 104-327 206-414 (490)
37 KOG4658 Apoptotic ATPase [Sign 98.9 1.3E-09 2.8E-14 122.1 4.3 110 107-219 566-675 (889)
38 PF13855 LRR_8: Leucine rich r 98.8 1.8E-09 3.8E-14 79.9 2.4 59 395-453 2-60 (61)
39 KOG4658 Apoptotic ATPase [Sign 98.8 7.5E-09 1.6E-13 116.1 8.3 59 392-450 768-827 (889)
40 PF13855 LRR_8: Leucine rich r 98.8 2.8E-09 6E-14 78.8 3.1 61 418-478 1-61 (61)
41 KOG0531 Protein phosphatase 1, 98.8 6.6E-10 1.4E-14 116.5 -2.0 130 110-252 70-199 (414)
42 KOG0531 Protein phosphatase 1, 98.8 1.4E-09 3.1E-14 114.0 0.5 234 104-358 87-320 (414)
43 PF08263 LRRNT_2: Leucine rich 98.7 2.5E-08 5.4E-13 67.5 4.6 41 37-78 2-43 (43)
44 KOG2120 SCF ubiquitin ligase, 98.6 2.8E-09 6.1E-14 100.1 -4.0 185 161-354 185-374 (419)
45 KOG2982 Uncharacterized conser 98.5 1.8E-08 3.9E-13 94.7 0.7 88 162-252 46-134 (418)
46 KOG1859 Leucine-rich repeat pr 98.5 3.6E-09 7.8E-14 110.3 -4.6 110 390-504 183-294 (1096)
47 KOG2120 SCF ubiquitin ligase, 98.5 4.9E-09 1.1E-13 98.5 -4.9 180 138-323 186-374 (419)
48 COG5238 RNA1 Ran GTPase-activa 98.4 8.4E-08 1.8E-12 89.2 0.8 228 108-357 26-286 (388)
49 KOG1859 Leucine-rich repeat pr 98.3 4.1E-08 9E-13 102.6 -3.2 102 240-356 165-267 (1096)
50 KOG4579 Leucine-rich repeat (L 98.3 5.2E-08 1.1E-12 81.3 -2.3 88 393-483 76-163 (177)
51 KOG2982 Uncharacterized conser 98.3 3.1E-07 6.8E-12 86.5 1.5 212 110-326 43-263 (418)
52 PRK15386 type III secretion pr 98.1 7E-06 1.5E-10 83.2 8.3 75 259-355 48-124 (426)
53 COG5238 RNA1 Ran GTPase-activa 98.1 1.1E-06 2.4E-11 81.8 1.9 236 82-325 30-316 (388)
54 KOG4579 Leucine-rich repeat (L 98.0 3.6E-07 7.8E-12 76.4 -2.4 59 267-326 79-137 (177)
55 PF12799 LRR_4: Leucine Rich r 98.0 9.7E-06 2.1E-10 54.9 4.3 37 290-326 2-38 (44)
56 PF12799 LRR_4: Leucine Rich r 97.9 9.9E-06 2.1E-10 54.8 3.2 36 395-431 2-37 (44)
57 KOG4341 F-box protein containi 97.9 7.9E-07 1.7E-11 87.8 -3.5 37 393-429 400-437 (483)
58 KOG1644 U2-associated snRNP A' 97.9 1.5E-05 3.2E-10 71.5 4.7 108 111-221 41-149 (233)
59 PRK15386 type III secretion pr 97.8 7.6E-05 1.6E-09 75.8 8.9 77 207-301 47-124 (426)
60 KOG1644 U2-associated snRNP A' 97.8 5.5E-05 1.2E-09 67.9 6.0 130 114-250 21-151 (233)
61 KOG3665 ZYG-1-like serine/thre 97.7 1.5E-05 3.3E-10 87.6 2.4 114 110-225 146-263 (699)
62 KOG2739 Leucine-rich acidic nu 97.6 2.7E-05 5.8E-10 72.9 2.2 113 104-219 35-150 (260)
63 KOG3665 ZYG-1-like serine/thre 97.6 3.1E-05 6.8E-10 85.2 2.4 41 185-226 147-187 (699)
64 KOG2739 Leucine-rich acidic nu 97.3 0.00012 2.6E-09 68.6 2.1 115 129-246 35-150 (260)
65 KOG4341 F-box protein containi 97.1 4.6E-05 1E-09 75.6 -2.7 88 392-479 344-439 (483)
66 KOG2123 Uncharacterized conser 96.9 3.8E-05 8.3E-10 72.1 -5.4 103 111-218 18-123 (388)
67 KOG2123 Uncharacterized conser 96.4 0.00025 5.3E-09 66.8 -3.5 83 137-225 19-101 (388)
68 PF13306 LRR_5: Leucine rich r 96.2 0.011 2.4E-07 50.7 6.2 13 207-219 53-65 (129)
69 PF13306 LRR_5: Leucine rich r 96.0 0.021 4.6E-07 48.9 6.7 60 182-248 8-67 (129)
70 KOG1947 Leucine rich repeat pr 95.6 0.0023 5E-08 68.7 -1.0 113 111-224 187-307 (482)
71 KOG1947 Leucine rich repeat pr 95.5 0.0038 8.2E-08 67.1 -0.1 117 106-222 208-331 (482)
72 PF00560 LRR_1: Leucine Rich R 95.3 0.0058 1.3E-07 34.3 0.4 18 420-438 2-19 (22)
73 PF00560 LRR_1: Leucine Rich R 95.2 0.0073 1.6E-07 33.9 0.7 18 396-414 2-19 (22)
74 KOG4308 LRR-containing protein 94.5 0.00044 9.5E-09 73.0 -10.3 61 396-456 235-304 (478)
75 KOG4308 LRR-containing protein 94.3 0.00093 2E-08 70.5 -8.4 87 139-225 89-185 (478)
76 PF13504 LRR_7: Leucine rich r 93.4 0.058 1.3E-06 28.0 1.6 15 290-304 2-16 (17)
77 KOG0473 Leucine-rich repeat pr 92.0 0.0056 1.2E-07 56.4 -5.8 85 392-479 40-124 (326)
78 KOG3864 Uncharacterized conser 90.2 0.042 9E-07 49.9 -2.0 82 395-476 102-186 (221)
79 KOG0473 Leucine-rich repeat pr 88.4 0.03 6.5E-07 51.8 -4.2 62 392-455 63-124 (326)
80 KOG3864 Uncharacterized conser 87.2 0.097 2.1E-06 47.6 -1.7 80 139-220 103-184 (221)
81 TIGR00864 PCC polycystin catio 86.9 0.62 1.4E-05 58.1 4.2 36 448-483 1-36 (2740)
82 smart00370 LRR Leucine-rich re 86.8 0.58 1.3E-05 27.2 2.1 14 442-455 2-15 (26)
83 smart00369 LRR_TYP Leucine-ric 86.8 0.58 1.3E-05 27.2 2.1 14 442-455 2-15 (26)
84 smart00369 LRR_TYP Leucine-ric 85.6 0.75 1.6E-05 26.7 2.1 14 137-150 2-15 (26)
85 smart00370 LRR Leucine-rich re 85.6 0.75 1.6E-05 26.7 2.1 14 137-150 2-15 (26)
86 PF13516 LRR_6: Leucine Rich r 85.3 0.45 9.9E-06 27.1 1.0 20 312-331 2-21 (24)
87 PF07172 GRP: Glycine rich pro 82.4 0.96 2.1E-05 36.2 2.1 21 1-22 1-21 (95)
88 KOG4242 Predicted myosin-I-bin 80.2 12 0.00025 39.0 9.2 19 137-155 165-183 (553)
89 smart00364 LRR_BAC Leucine-ric 73.6 2 4.4E-05 25.0 1.1 18 289-306 2-19 (26)
90 smart00365 LRR_SD22 Leucine-ri 73.6 3.1 6.6E-05 24.4 1.9 16 186-201 2-17 (26)
91 smart00368 LRR_RI Leucine rich 61.7 6.6 0.00014 23.3 1.7 14 442-455 2-15 (28)
92 KOG4242 Predicted myosin-I-bin 58.3 33 0.00072 35.8 7.0 212 138-356 215-453 (553)
93 KOG3763 mRNA export factor TAP 54.9 7.8 0.00017 41.0 2.0 12 267-278 272-283 (585)
94 KOG3763 mRNA export factor TAP 53.4 8.4 0.00018 40.8 2.0 15 289-303 270-284 (585)
95 PF15102 TMEM154: TMEM154 prot 46.0 28 0.0006 30.1 3.6 23 547-569 66-88 (146)
96 PF01102 Glycophorin_A: Glycop 35.5 19 0.00042 30.2 1.1 21 542-562 66-86 (122)
97 smart00367 LRR_CC Leucine-rich 28.5 42 0.0009 19.3 1.5 13 465-477 1-13 (26)
98 PF06305 DUF1049: Protein of u 27.6 80 0.0017 23.1 3.3 10 545-554 24-33 (68)
99 PF02950 Conotoxin: Conotoxin; 26.4 30 0.00065 26.1 0.8 7 66-72 61-67 (75)
100 PF07204 Orthoreo_P10: Orthore 22.5 41 0.00089 26.5 0.8 29 539-567 41-69 (98)
101 smart00082 LRRCT Leucine rich 22.3 43 0.00094 22.7 0.9 10 499-508 1-10 (51)
102 PF01299 Lamp: Lysosome-associ 22.1 61 0.0013 32.4 2.3 8 544-551 274-281 (306)
103 PF12606 RELT: Tumour necrosis 21.1 97 0.0021 21.5 2.3 22 556-577 15-36 (50)
104 TIGR00864 PCC polycystin catio 20.4 65 0.0014 41.5 2.4 32 400-431 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-52 Score=487.05 Aligned_cols=455 Identities=31% Similarity=0.495 Sum_probs=284.2
Q ss_pred cHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCccCeeeCCCCCcEEEEEcCCCCCCCCCCCceecCccccCCCCCC
Q 040109 36 LDEEKEALLAFKQGLIDESGILSSWGREDEKRNCCKWRGVRCSNKTGHVLGLDLRALSDSPVDALKGTINPSLLKLQHLT 115 (598)
Q Consensus 36 ~~~~~~~l~~~k~~~~~~~~~l~~W~~~~~~~~~c~w~gv~C~~~~~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~ 115 (598)
.++|+.||++||+++.+|...+.+|. ...+||.|.||+|++ .++|+.+++++ +.++|.+++.+..+++|+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~------~~i~~~~~~~~~~l~~L~ 96 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSG------KNISGKISSAIFRLPYIQ 96 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecC------CCccccCChHHhCCCCCC
Confidence 56899999999999988888889997 467899999999974 57899999998 555666666666666666
Q ss_pred EEECcCCCCCCCCcchhcC-CCCCCCEEECCCCCC----------------------CCCCccccCCCCCCCEEEccCCC
Q 040109 116 YLDLSWNNFSGSPIPEFIG-SLSKLSELALSSAQL----------------------AGPIPHQLGNLSRLQVLDLRFNN 172 (598)
Q Consensus 116 ~L~Ls~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l----------------------~~~~p~~l~~l~~L~~L~Ls~n~ 172 (598)
+|+|++|.+.+. +|..+. .+++|++|+|++|.+ ++.+|..++++++|++|++++|.
T Consensus 97 ~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~ 175 (968)
T PLN00113 97 TINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV 175 (968)
T ss_pred EEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCc
Confidence 666666655543 444322 344444444444433 33344444445555555555554
Q ss_pred CCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhc-----------------
Q 040109 173 LFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHL----------------- 235 (598)
Q Consensus 173 l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~----------------- 235 (598)
+ ....+..+.++++|++|++++|.+.+. +|..+..+++|++|++++|.+.+..+..+..+
T Consensus 176 l-~~~~p~~~~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 252 (968)
T PLN00113 176 L-VGKIPNSLTNLTSLEFLTLASNQLVGQ--IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI 252 (968)
T ss_pred c-cccCChhhhhCcCCCeeeccCCCCcCc--CChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecccc
Confidence 3 122223344444444444444444332 22334444444444444444433332211111
Q ss_pred ----cccCCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCC-cchhhcC
Q 040109 236 ----NYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLRE-VPKFLGN 310 (598)
Q Consensus 236 ----~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~ 310 (598)
..+++|+.|++++|.+.+.+|..+..+++ |++|++++|.+.+.+|..+.++++|++|++++|.+.+ +|..+..
T Consensus 253 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 330 (968)
T PLN00113 253 PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQK--LISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS 330 (968)
T ss_pred ChhHhCCCCCCEEECcCCeeeccCchhHhhccC--cCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhc
Confidence 00144555555555555555555555555 5566666666655566656666666666666666654 5555555
Q ss_pred CCCCcEEEcccCcCccchhhhhhhcCC------------CC-----------------------------CCCCCCCEEE
Q 040109 311 MSSLKMLVLSYNELRGELSEFIQNVSS------------GS-----------------------------TKNSSLEWLY 349 (598)
Q Consensus 311 l~~L~~L~Ls~n~l~~~~~~~l~~l~~------------g~-----------------------------~~~~~L~~L~ 349 (598)
+++|+.|++++|.+.+.+|..+..+.. +. ..+++|+.|+
T Consensus 331 l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ 410 (968)
T PLN00113 331 LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVR 410 (968)
T ss_pred CCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEE
Confidence 666666666666665555554443331 00 0123344444
Q ss_pred ccCccccccCCC-CCCC------------------------CcCccccccccceE--------------EE-----EcCC
Q 040109 350 LASNEITGTIPN-LGGF------------------------PGMLMPLIYFDKIT--------------VT-----WKGG 385 (598)
Q Consensus 350 Ls~N~l~~~~p~-l~~l------------------------~~l~~~~~~~~~~~--------------~~-----~~~~ 385 (598)
+++|++++.+|. +.++ ++|.......+.+. .. ..+.
T Consensus 411 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~ 490 (968)
T PLN00113 411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGA 490 (968)
T ss_pred CcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCc
Confidence 444444433332 1111 12211111111110 00 1233
Q ss_pred cccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCC
Q 040109 386 QYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRL 465 (598)
Q Consensus 386 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 465 (598)
.+..+..+++|+.|+|++|++.+.+|..+.++++|++|+|++|.+++.+|..+..+++|+.|||++|++++.+|..+.++
T Consensus 491 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 570 (968)
T PLN00113 491 VPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNV 570 (968)
T ss_pred cChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcC
Confidence 44456678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEeCCCCcceecCCCCCccCccCCCccCCCCCCCCCC
Q 040109 466 RLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLP 506 (598)
Q Consensus 466 ~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~gnp~lC~~~ 506 (598)
++|+.|++++|++.|.+|...++..+...++.|||.+|+.+
T Consensus 571 ~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 571 ESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred cccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 99999999999999999999999999999999999999854
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9.1e-38 Score=362.99 Aligned_cols=372 Identities=32% Similarity=0.418 Sum_probs=271.8
Q ss_pred CCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccC-CCCCCCEEEccCCCCCCCCCcccccCCCCCCE
Q 040109 112 QHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLG-NLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRY 190 (598)
Q Consensus 112 ~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~ 190 (598)
.+++.|+|++|.+++. ++..+..+++|++|+|++|++++.+|..+. .+++|++|++++|.+.... + ...+++|++
T Consensus 69 ~~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~-p--~~~l~~L~~ 144 (968)
T PLN00113 69 SRVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSI-P--RGSIPNLET 144 (968)
T ss_pred CcEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcccccc-C--ccccCCCCE
Confidence 3689999999999986 889999999999999999999988887765 8999999999999873222 2 245778888
Q ss_pred EEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEE
Q 040109 191 LDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHI 270 (598)
Q Consensus 191 L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L 270 (598)
|++++|.+.+. .+..+..+++|++|++++|.+.+..+..+..+ ++|++|++++|.+.+.+|..+..+.+ |+.|
T Consensus 145 L~Ls~n~~~~~--~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~--L~~L 217 (968)
T PLN00113 145 LDLSNNMLSGE--IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL---TSLEFLTLASNQLVGQIPRELGQMKS--LKWI 217 (968)
T ss_pred EECcCCccccc--CChHHhcCCCCCEEECccCcccccCChhhhhC---cCCCeeeccCCCCcCcCChHHcCcCC--ccEE
Confidence 88888887753 45677888888888888888777666433332 77888888888887777777777777 8888
Q ss_pred EccCCccccccchhhcCCCCccEEeeccCCCCC-cchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEE
Q 040109 271 DLGSNRLHGSIPVAFGHMASLRYLGLLSNRLRE-VPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLY 349 (598)
Q Consensus 271 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~ 349 (598)
++++|.+++.+|..++++++|++|++++|.+.+ +|..+.++++|+.|++++|.+.+..|..+..+. +|+.|+
T Consensus 218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-------~L~~L~ 290 (968)
T PLN00113 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ-------KLISLD 290 (968)
T ss_pred ECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhcc-------CcCEEE
Confidence 888888877777777777888888888877775 777777777788888877777777777777666 677777
Q ss_pred ccCccccccCCC-CCCCCcCccccccccceE--------------------EEEcCCcccccccccccceEeccCCcCCC
Q 040109 350 LASNEITGTIPN-LGGFPGMLMPLIYFDKIT--------------------VTWKGGQYEYKSILGLIKIIDLSSNKLGG 408 (598)
Q Consensus 350 Ls~N~l~~~~p~-l~~l~~l~~~~~~~~~~~--------------------~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 408 (598)
+++|.+++.+|. +.+++++.......+.+. ....+..+..++.+++|+.|++++|++++
T Consensus 291 Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~ 370 (968)
T PLN00113 291 LSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG 370 (968)
T ss_pred CcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEe
Confidence 777766666554 344444433221111110 00122334444556667777777777766
Q ss_pred cCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcceecCCCC-Cc
Q 040109 409 EVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKG-TQ 487 (598)
Q Consensus 409 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~ 487 (598)
.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++++.+|..+.+++.|+.|++++|++++.+|.. ..
T Consensus 371 ~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 450 (968)
T PLN00113 371 EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD 450 (968)
T ss_pred eCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhcc
Confidence 67777766777777777777777777777777778888888888887777777888888888888888888777654 35
Q ss_pred cCccCCCccCCCCC
Q 040109 488 LQRFGASTYAGNPE 501 (598)
Q Consensus 488 ~~~l~~~~~~gnp~ 501 (598)
++++..+.+.+|..
T Consensus 451 l~~L~~L~L~~n~~ 464 (968)
T PLN00113 451 MPSLQMLSLARNKF 464 (968)
T ss_pred CCCCcEEECcCcee
Confidence 67777888888764
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-38 Score=316.15 Aligned_cols=401 Identities=23% Similarity=0.242 Sum_probs=328.0
Q ss_pred cEEEEEcCCCCCCCCCCCceecCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCC
Q 040109 83 HVLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSR 162 (598)
Q Consensus 83 ~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 162 (598)
.+..||++. |.++..-+..|.++++|+.+++.+|.++ .+|.+.+...+|+.|+|.+|.|+..-.+.+..++.
T Consensus 79 ~t~~Ldlsn------Nkl~~id~~~f~nl~nLq~v~l~~N~Lt--~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~a 150 (873)
T KOG4194|consen 79 QTQTLDLSN------NKLSHIDFEFFYNLPNLQEVNLNKNELT--RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPA 150 (873)
T ss_pred ceeeeeccc------cccccCcHHHHhcCCcceeeeeccchhh--hcccccccccceeEEeeeccccccccHHHHHhHhh
Confidence 356677777 7777666667889999999999999998 48888777888999999999998777788888999
Q ss_pred CCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCcc
Q 040109 163 LQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLE 242 (598)
Q Consensus 163 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~ 242 (598)
|+.||||.|.+ .....+.|..-.++++|+|++|.|+.+.. +.|..+.+|..|.|+.|+++..+...|..+ ++|+
T Consensus 151 lrslDLSrN~i-s~i~~~sfp~~~ni~~L~La~N~It~l~~--~~F~~lnsL~tlkLsrNrittLp~r~Fk~L---~~L~ 224 (873)
T KOG4194|consen 151 LRSLDLSRNLI-SEIPKPSFPAKVNIKKLNLASNRITTLET--GHFDSLNSLLTLKLSRNRITTLPQRSFKRL---PKLE 224 (873)
T ss_pred hhhhhhhhchh-hcccCCCCCCCCCceEEeecccccccccc--ccccccchheeeecccCcccccCHHHhhhc---chhh
Confidence 99999999987 55566677888899999999999998855 788888899999999999999887545433 8899
Q ss_pred EEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcc-hhhcCCCCCcEEEccc
Q 040109 243 VIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVP-KFLGNMSSLKMLVLSY 321 (598)
Q Consensus 243 ~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~ 321 (598)
.|+|..|.+.-.---.|.++++ |+.|.+..|.++..-...|..+.++++|+|+.|++..+. .++.+++.|++|++|+
T Consensus 225 ~LdLnrN~irive~ltFqgL~S--l~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 225 SLDLNRNRIRIVEGLTFQGLPS--LQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred hhhccccceeeehhhhhcCchh--hhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch
Confidence 9999999887444556777888 999999999998777788899999999999999998844 5788899999999999
Q ss_pred CcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEec
Q 040109 322 NELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDL 401 (598)
Q Consensus 322 n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 401 (598)
|.+..+.++.+.-.+ +|++|+|++|+++..-+ ..+..+..|++|+|
T Consensus 303 NaI~rih~d~Wsftq-------kL~~LdLs~N~i~~l~~---------------------------~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 303 NAIQRIHIDSWSFTQ-------KLKELDLSSNRITRLDE---------------------------GSFRVLSQLEELNL 348 (873)
T ss_pred hhhheeecchhhhcc-------cceeEeccccccccCCh---------------------------hHHHHHHHhhhhcc
Confidence 999988888887777 89999999999984322 23455778999999
Q ss_pred cCCcCCCcCchhhhcccCCcEEECcCCcCcccCCc---ccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcc
Q 040109 402 SSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITP---RIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNF 478 (598)
Q Consensus 402 s~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 478 (598)
++|.++..-...|..+++|+.|||++|.++..|.+ .|.+|++|+.|++.+|++..+...+|..+..|+.|||.+|.+
T Consensus 349 s~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 349 SHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred cccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcc
Confidence 99999977778899999999999999999876654 578899999999999999865556999999999999999999
Q ss_pred eecCCCCCccCccCCCccCCCCCCCCCCCC----------------CCCCCCCCCCCCCCCCCCCCCCCCC
Q 040109 479 SGKIPKGTQLQRFGASTYAGNPELCGLPLP----------------NKCLDEESAPSPSRDDAYNTPDDDG 533 (598)
Q Consensus 479 ~~~~p~~~~~~~l~~~~~~gnp~lC~~~~~----------------~~c~~~~~~~~~~~~~~~~~~~~~~ 533 (598)
...-|....-..++.+.+..-.++|+|++. -.|.+|+...+.+..........|.
T Consensus 429 aSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~CayPe~Lad~~i~svd~~~lvC~ 499 (873)
T KOG4194|consen 429 ASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPEPLADQSIVSVDTANLVCD 499 (873)
T ss_pred eeecccccccchhhhhhhcccceEEeccHHHHHHHHHhcccccceeeeccCCcccccceeEeechhhceec
Confidence 865565533337778888888899999876 2598888876554443333333333
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=7.7e-36 Score=297.46 Aligned_cols=352 Identities=28% Similarity=0.290 Sum_probs=305.8
Q ss_pred CceecCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCc
Q 040109 100 LKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNL 179 (598)
Q Consensus 100 l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~ 179 (598)
+.|-+|. .-+.||+++|.++.. -+.+|.++++|+++++.+|.++ .+|...+...+|+.|+|.+|.| .....
T Consensus 72 l~g~lp~------~t~~LdlsnNkl~~i-d~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I-~sv~s 142 (873)
T KOG4194|consen 72 LKGFLPS------QTQTLDLSNNKLSHI-DFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLI-SSVTS 142 (873)
T ss_pred cCCcCcc------ceeeeeccccccccC-cHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeecccc-ccccH
Confidence 4555553 457899999999986 7888999999999999999999 7888777777899999999998 55566
Q ss_pred ccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhh
Q 040109 180 DWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWL 259 (598)
Q Consensus 180 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l 259 (598)
+.+..++.|+.|||+.|.|+.++. ..|..-.++++|+|++|+|+......|..+ .+|..|.|+.|.++...+..|
T Consensus 143 e~L~~l~alrslDLSrN~is~i~~--~sfp~~~ni~~L~La~N~It~l~~~~F~~l---nsL~tlkLsrNrittLp~r~F 217 (873)
T KOG4194|consen 143 EELSALPALRSLDLSRNLISEIPK--PSFPAKVNIKKLNLASNRITTLETGHFDSL---NSLLTLKLSRNRITTLPQRSF 217 (873)
T ss_pred HHHHhHhhhhhhhhhhchhhcccC--CCCCCCCCceEEeecccccccccccccccc---chheeeecccCcccccCHHHh
Confidence 679999999999999999999865 677777899999999999999888777766 689999999999997666778
Q ss_pred hhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcc-hhhcCCCCCcEEEcccCcCccchhhhhhhcCCC
Q 040109 260 LNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVP-KFLGNMSSLKMLVLSYNELRGELSEFIQNVSSG 338 (598)
Q Consensus 260 ~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g 338 (598)
.+++. |+.|+|..|++.-.---.|.++++|+.|.+..|.+..+. ..|..+.++++|+|+.|+++..-..++.++.
T Consensus 218 k~L~~--L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt-- 293 (873)
T KOG4194|consen 218 KRLPK--LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT-- 293 (873)
T ss_pred hhcch--hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc--
Confidence 88999 999999999998554667899999999999999999854 4788899999999999999988888888887
Q ss_pred CCCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhccc
Q 040109 339 STKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLV 418 (598)
Q Consensus 339 ~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 418 (598)
+|+.|++|+|.+...-+ ..+...++|++|||++|+|+...+.+|..+.
T Consensus 294 -----~L~~L~lS~NaI~rih~---------------------------d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~ 341 (873)
T KOG4194|consen 294 -----SLEQLDLSYNAIQRIHI---------------------------DSWSFTQKLKELDLSSNRITRLDEGSFRVLS 341 (873)
T ss_pred -----hhhhhccchhhhheeec---------------------------chhhhcccceeEeccccccccCChhHHHHHH
Confidence 99999999999874322 2234467899999999999988889999999
Q ss_pred CCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcc---cccCCCCCCEEeCCCCcceecCCCC--CccCccCC
Q 040109 419 GLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPS---SLSRLRLLSVMDLSYNNFSGKIPKG--TQLQRFGA 493 (598)
Q Consensus 419 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~ls~N~l~~~~p~~--~~~~~l~~ 493 (598)
.|++|+|++|+++..-...|..+++|+.|||++|.++..+.+ .|..+++|+.|++.+|++. .||.. ..+..++.
T Consensus 342 ~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~ 420 (873)
T KOG4194|consen 342 QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEH 420 (873)
T ss_pred HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccce
Confidence 999999999999977777899999999999999999877655 5888999999999999997 77765 46888899
Q ss_pred CccCCCCCC
Q 040109 494 STYAGNPEL 502 (598)
Q Consensus 494 ~~~~gnp~l 502 (598)
+++.+|+..
T Consensus 421 LdL~~Naia 429 (873)
T KOG4194|consen 421 LDLGDNAIA 429 (873)
T ss_pred ecCCCCcce
Confidence 999999754
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=7.4e-36 Score=299.29 Aligned_cols=368 Identities=26% Similarity=0.353 Sum_probs=323.0
Q ss_pred CcEEEEEcCCCCCCCCCCCc-eecCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCC
Q 040109 82 GHVLGLDLRALSDSPVDALK-GTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNL 160 (598)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~l~-g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 160 (598)
.-|+.+|+++ +.++ +..|.....++.++.|.|....+. .+|+.++.+.+|++|.+++|++. .+-..+..+
T Consensus 7 pFVrGvDfsg------NDFsg~~FP~~v~qMt~~~WLkLnrt~L~--~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~L 77 (1255)
T KOG0444|consen 7 PFVRGVDFSG------NDFSGDRFPHDVEQMTQMTWLKLNRTKLE--QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDL 77 (1255)
T ss_pred ceeecccccC------CcCCCCcCchhHHHhhheeEEEechhhhh--hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccc
Confidence 3578889998 7888 578889999999999999999998 59999999999999999999998 666778999
Q ss_pred CCCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCC
Q 040109 161 SRLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKS 240 (598)
Q Consensus 161 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 240 (598)
+.|+.+++.+|++...+.++.+-.+..|..|||++|++... |..+...+++-.|++++|+|..++...+..+ +.
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~Ev---P~~LE~AKn~iVLNLS~N~IetIPn~lfinL---tD 151 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREV---PTNLEYAKNSIVLNLSYNNIETIPNSLFINL---TD 151 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhc---chhhhhhcCcEEEEcccCccccCCchHHHhh---Hh
Confidence 99999999999998889999999999999999999999985 4678888999999999999999988655554 88
Q ss_pred ccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCC--cchhhcCCCCCcEEE
Q 040109 241 LEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLRE--VPKFLGNMSSLKMLV 318 (598)
Q Consensus 241 L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L~ 318 (598)
|-.||||+|.+. .+|+.+..+.. |+.|+|++|.+...--..+..+++|++|++++.+-+- +|.++..+.+|..+|
T Consensus 152 LLfLDLS~NrLe-~LPPQ~RRL~~--LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvD 228 (1255)
T KOG0444|consen 152 LLFLDLSNNRLE-MLPPQIRRLSM--LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVD 228 (1255)
T ss_pred Hhhhccccchhh-hcCHHHHHHhh--hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcc
Confidence 999999999998 78888999988 9999999998874433445567889999999987654 999999999999999
Q ss_pred cccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccce
Q 040109 319 LSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKI 398 (598)
Q Consensus 319 Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 398 (598)
+|.|.+. ..|+.+..+. +|+.|+||+|+++..-- ..+...+|++
T Consensus 229 lS~N~Lp-~vPecly~l~-------~LrrLNLS~N~iteL~~----------------------------~~~~W~~lEt 272 (1255)
T KOG0444|consen 229 LSENNLP-IVPECLYKLR-------NLRRLNLSGNKITELNM----------------------------TEGEWENLET 272 (1255)
T ss_pred ccccCCC-cchHHHhhhh-------hhheeccCcCceeeeec----------------------------cHHHHhhhhh
Confidence 9999987 6788888888 99999999999983211 1123457999
Q ss_pred EeccCCcCCCcCchhhhcccCCcEEECcCCcCc-ccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCc
Q 040109 399 IDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLT-GQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNN 477 (598)
Q Consensus 399 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~ 477 (598)
|+||.|+++ ..|..+.+++.|+.|.+.+|+++ +-||+.++.+.+|+++..++|.+. ..|+.++.|..|+.|.|+.|+
T Consensus 273 LNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 273 LNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNR 350 (1255)
T ss_pred hccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccc
Confidence 999999999 89999999999999999999987 348999999999999999999986 899999999999999999999
Q ss_pred ceecCCCC-CccCccCCCccCCCCCCCCCC
Q 040109 478 FSGKIPKG-TQLQRFGASTYAGNPELCGLP 506 (598)
Q Consensus 478 l~~~~p~~-~~~~~l~~~~~~gnp~lC~~~ 506 (598)
+. .+|+. -.++.++.+++..||.+--+|
T Consensus 351 Li-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 351 LI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 98 67876 467888999999999886544
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=1.3e-34 Score=276.95 Aligned_cols=387 Identities=27% Similarity=0.339 Sum_probs=248.2
Q ss_pred EEEEEcCCCCCCCCCCCceecCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCC
Q 040109 84 VLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRL 163 (598)
Q Consensus 84 v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 163 (598)
.+.+++.+ +.++ .+|++++++..++.++.++|+++ .+|..++.+.+|+.|+.++|.+. .+|+.++.+..|
T Consensus 70 l~vl~~~~------n~l~-~lp~aig~l~~l~~l~vs~n~ls--~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l 139 (565)
T KOG0472|consen 70 LTVLNVHD------NKLS-QLPAAIGELEALKSLNVSHNKLS--ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDL 139 (565)
T ss_pred eeEEEecc------chhh-hCCHHHHHHHHHHHhhcccchHh--hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhh
Confidence 45666665 5555 67888888989999999999888 48888888889999999998888 777788888888
Q ss_pred CEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccE
Q 040109 164 QVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEV 243 (598)
Q Consensus 164 ~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~ 243 (598)
+.|+..+|++ ...++.+.++.+|..+++.+|++...+. ..+ .++.|++++...|-+...++. ... +.+|+.
T Consensus 140 ~dl~~~~N~i--~slp~~~~~~~~l~~l~~~~n~l~~l~~--~~i-~m~~L~~ld~~~N~L~tlP~~-lg~---l~~L~~ 210 (565)
T KOG0472|consen 140 EDLDATNNQI--SSLPEDMVNLSKLSKLDLEGNKLKALPE--NHI-AMKRLKHLDCNSNLLETLPPE-LGG---LESLEL 210 (565)
T ss_pred hhhhcccccc--ccCchHHHHHHHHHHhhccccchhhCCH--HHH-HHHHHHhcccchhhhhcCChh-hcc---hhhhHH
Confidence 8888888887 3344556666777777777777766532 222 266666666666666555442 111 155555
Q ss_pred EEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhh-cCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccC
Q 040109 244 IDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAF-GHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYN 322 (598)
Q Consensus 244 L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n 322 (598)
|++..|++. .+| .|.++.. |++|+++.|+++ .+|... .++.++..||+.+|+++++|+.+.-+.+|.+||+|+|
T Consensus 211 LyL~~Nki~-~lP-ef~gcs~--L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN 285 (565)
T KOG0472|consen 211 LYLRRNKIR-FLP-EFPGCSL--LKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNN 285 (565)
T ss_pred HHhhhcccc-cCC-CCCccHH--HHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCC
Confidence 666666554 233 4444444 555555555554 222222 2445555555555555555554444445555555555
Q ss_pred cCccchhhhhhhcC-----------------------C-------------C------------C-----C----CCCCC
Q 040109 323 ELRGELSEFIQNVS-----------------------S-------------G------------S-----T----KNSSL 345 (598)
Q Consensus 323 ~l~~~~~~~l~~l~-----------------------~-------------g------------~-----~----~~~~L 345 (598)
.+++.++ .++++. . | . . ...+.
T Consensus 286 ~is~Lp~-sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~t 364 (565)
T KOG0472|consen 286 DISSLPY-SLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITT 364 (565)
T ss_pred ccccCCc-ccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhh
Confidence 5443322 233321 0 0 0 0 00122
Q ss_pred CEEEccCccccccCCC---------------------------CCCCCcCccccccccceEEEEcCCcccccccccccce
Q 040109 346 EWLYLASNEITGTIPN---------------------------LGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKI 398 (598)
Q Consensus 346 ~~L~Ls~N~l~~~~p~---------------------------l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 398 (598)
+.|++++-+++ .+|+ +..+..+.......++ ..+..+..++.+++|+.
T Consensus 365 kiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn----~isfv~~~l~~l~kLt~ 439 (565)
T KOG0472|consen 365 KILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNN----KISFVPLELSQLQKLTF 439 (565)
T ss_pred hhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcC----ccccchHHHHhhhccee
Confidence 23333333222 1111 0000000000011111 13344566778899999
Q ss_pred EeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcc
Q 040109 399 IDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNF 478 (598)
Q Consensus 399 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 478 (598)
|+|++|-+. .+|..++.+..|+.||+|+|+|. .+|..+..+..|+.+-.++|++...-|+.+.++.+|.+||+.+|.+
T Consensus 440 L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdl 517 (565)
T KOG0472|consen 440 LDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDL 517 (565)
T ss_pred eecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCch
Confidence 999999988 89999999999999999999998 8899888888899888899999866667799999999999999999
Q ss_pred eecCCCCCccCccCCCccCCCCCC
Q 040109 479 SGKIPKGTQLQRFGASTYAGNPEL 502 (598)
Q Consensus 479 ~~~~p~~~~~~~l~~~~~~gnp~l 502 (598)
....|..+.++++..+.+.|||+.
T Consensus 518 q~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 518 QQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhCChhhccccceeEEEecCCccC
Confidence 855555688999999999999976
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=4.3e-32 Score=272.38 Aligned_cols=328 Identities=25% Similarity=0.308 Sum_probs=262.2
Q ss_pred eecCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCC-CCCccccCCCCCCCEEEccCCCCCCCCCcc
Q 040109 102 GTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLA-GPIPHQLGNLSRLQVLDLRFNNLFSSGNLD 180 (598)
Q Consensus 102 g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~ 180 (598)
..+|..++.+.+|++|.+++|++.. +...+..++.|+.+++..|++. .-+|..+..+..|..||||+|++ ...+.
T Consensus 45 ~~vPeEL~~lqkLEHLs~~HN~L~~--vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL--~EvP~ 120 (1255)
T KOG0444|consen 45 EQVPEELSRLQKLEHLSMAHNQLIS--VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQL--REVPT 120 (1255)
T ss_pred hhChHHHHHHhhhhhhhhhhhhhHh--hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhh--hhcch
Confidence 3689999999999999999999984 7788999999999999999986 35788888999999999999997 44566
Q ss_pred cccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhh
Q 040109 181 WLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLL 260 (598)
Q Consensus 181 ~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~ 260 (598)
.+..-+++-+|+|++|+|.++|. ..+.+++.|-.|++++|++...+|..- .+..|++|+|++|.+...-...+.
T Consensus 121 ~LE~AKn~iVLNLS~N~IetIPn--~lfinLtDLLfLDLS~NrLe~LPPQ~R----RL~~LqtL~Ls~NPL~hfQLrQLP 194 (1255)
T KOG0444|consen 121 NLEYAKNSIVLNLSYNNIETIPN--SLFINLTDLLFLDLSNNRLEMLPPQIR----RLSMLQTLKLSNNPLNHFQLRQLP 194 (1255)
T ss_pred hhhhhcCcEEEEcccCccccCCc--hHHHhhHhHhhhccccchhhhcCHHHH----HHhhhhhhhcCCChhhHHHHhcCc
Confidence 68888999999999999999987 788899999999999999999887422 227899999999988765555566
Q ss_pred hcCccCccEEEccCCccc-cccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCC
Q 040109 261 NVSSNLVDHIDLGSNRLH-GSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGS 339 (598)
Q Consensus 261 ~~~~~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~ 339 (598)
.+++ |+.|++++.+-+ ..+|.++..+.+|..+|+|.|.+..+|..+..+++|+.|+||+|+++..... .....
T Consensus 195 smts--L~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~-~~~W~--- 268 (1255)
T KOG0444|consen 195 SMTS--LSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMT-EGEWE--- 268 (1255)
T ss_pred cchh--hhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeecc-HHHHh---
Confidence 6777 999999987644 5689999999999999999999999999999999999999999998754321 22222
Q ss_pred CCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCC-CcCchhhhccc
Q 040109 340 TKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLG-GEVPEEIMDLV 418 (598)
Q Consensus 340 ~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~ 418 (598)
+|++|++|.|+++.. | .....++.|+.|.+.+|+++ .-+|..|+++.
T Consensus 269 ----~lEtLNlSrNQLt~L-P---------------------------~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~ 316 (1255)
T KOG0444|consen 269 ----NLETLNLSRNQLTVL-P---------------------------DAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI 316 (1255)
T ss_pred ----hhhhhccccchhccc-h---------------------------HHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence 799999999999842 2 23344556677777777664 23666777777
Q ss_pred CCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcce
Q 040109 419 GLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFS 479 (598)
Q Consensus 419 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 479 (598)
+|+.+..++|.+. .+|+.++.+..|+.|.|++|++- .+|+++.-++.|+.||+..|+-.
T Consensus 317 ~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 317 QLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 7777777777776 67777777777777777777765 66777777777777777777543
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.95 E-value=6.2e-30 Score=268.43 Aligned_cols=363 Identities=29% Similarity=0.421 Sum_probs=238.5
Q ss_pred EEEEEcCCCCCCCCCCCceecCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCC
Q 040109 84 VLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRL 163 (598)
Q Consensus 84 v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 163 (598)
..+||+++ ...+..|..+..+.+|+.|+++.|.+.. .|.+..++.+|++|.|.+|.+. ..|..+..+.+|
T Consensus 47 L~~l~lsn-------n~~~~fp~~it~l~~L~~ln~s~n~i~~--vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl 116 (1081)
T KOG0618|consen 47 LKSLDLSN-------NQISSFPIQITLLSHLRQLNLSRNYIRS--VPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNL 116 (1081)
T ss_pred eEEeeccc-------cccccCCchhhhHHHHhhcccchhhHhh--Cchhhhhhhcchhheeccchhh-cCchhHHhhhcc
Confidence 67888886 4556788888888888888888888873 7788888888888888888877 778888888888
Q ss_pred CEEEccCCCCCCCCCcccccCCC----------------------------------------CCCE-EEcCCCcCCCCC
Q 040109 164 QVLDLRFNNLFSSGNLDWLSYLS----------------------------------------SLRY-LDLGDCKLSKFS 202 (598)
Q Consensus 164 ~~L~Ls~n~l~~~~~~~~l~~l~----------------------------------------~L~~-L~L~~n~l~~~~ 202 (598)
++|+++.|.+.. .+..+..++ .|++ |+|.+|.+..
T Consensus 117 ~~LdlS~N~f~~--~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~-- 192 (1081)
T KOG0618|consen 117 QYLDLSFNHFGP--IPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEV-- 192 (1081)
T ss_pred cccccchhccCC--CchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhh--
Confidence 888888887621 111111111 2222 4444444431
Q ss_pred chhHhhcCCC--------------------CCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhc
Q 040109 203 NWFQVLSNLR--------------------SLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNV 262 (598)
Q Consensus 203 ~~~~~l~~l~--------------------~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 262 (598)
..+..++ +|+.|+.++|.++.... ...+.+|+.++++.|+++ .+|+|+..+
T Consensus 193 ---~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~-----~p~p~nl~~~dis~n~l~-~lp~wi~~~ 263 (1081)
T KOG0618|consen 193 ---LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV-----HPVPLNLQYLDISHNNLS-NLPEWIGAC 263 (1081)
T ss_pred ---hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc-----ccccccceeeecchhhhh-cchHHHHhc
Confidence 1122222 23333333333331111 001145556666666655 344666666
Q ss_pred CccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcCC-----
Q 040109 263 SSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSS----- 337 (598)
Q Consensus 263 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~----- 337 (598)
.+ |+.++..+|.++ .+|..+...++|+.|.+..|.+..+|....+++.|++|+|..|++...++..+.....
T Consensus 264 ~n--le~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~l 340 (1081)
T KOG0618|consen 264 AN--LEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTL 340 (1081)
T ss_pred cc--ceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHH
Confidence 66 666666666663 4555555556666666666666666665555666666666666665444433322221
Q ss_pred -------------CCCCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCC
Q 040109 338 -------------GSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSN 404 (598)
Q Consensus 338 -------------g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n 404 (598)
+....+.|+.|++.+|.++ ...+..+-.+.+|+.|+|++|
T Consensus 341 n~s~n~l~~lp~~~e~~~~~Lq~LylanN~Lt---------------------------d~c~p~l~~~~hLKVLhLsyN 393 (1081)
T KOG0618|consen 341 NVSSNKLSTLPSYEENNHAALQELYLANNHLT---------------------------DSCFPVLVNFKHLKVLHLSYN 393 (1081)
T ss_pred hhhhccccccccccchhhHHHHHHHHhcCccc---------------------------ccchhhhccccceeeeeeccc
Confidence 0111223333444444443 233445567889999999999
Q ss_pred cCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcce-ecCC
Q 040109 405 KLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFS-GKIP 483 (598)
Q Consensus 405 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~-~~~p 483 (598)
++.......+.+++.|++|+||+|+++ .+|..+..+..|++|...+|++. ..| .+.++++|+.+|+|.|+++ ..+|
T Consensus 394 rL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~ 470 (1081)
T KOG0618|consen 394 RLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLP 470 (1081)
T ss_pred ccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhh
Confidence 998555566789999999999999999 88999999999999999999997 677 7899999999999999997 3456
Q ss_pred CCCccCccCCCccCCCCCC
Q 040109 484 KGTQLQRFGASTYAGNPEL 502 (598)
Q Consensus 484 ~~~~~~~l~~~~~~gnp~l 502 (598)
.....++++.+++.||+++
T Consensus 471 ~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 471 EALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hhCCCcccceeeccCCccc
Confidence 5555589999999999974
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=2.7e-30 Score=247.50 Aligned_cols=245 Identities=28% Similarity=0.369 Sum_probs=215.9
Q ss_pred CCCceecCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCC
Q 040109 98 DALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSG 177 (598)
Q Consensus 98 ~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 177 (598)
+.+. .+.+.+.++..+.+|++++|.+. .+|.+++.+..++.++.++|++. .+|+.++.+.+|..|++++|.+ ..
T Consensus 55 N~l~-~l~~dl~nL~~l~vl~~~~n~l~--~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~--~e 128 (565)
T KOG0472|consen 55 NDLE-VLREDLKNLACLTVLNVHDNKLS--QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNEL--KE 128 (565)
T ss_pred Cchh-hccHhhhcccceeEEEeccchhh--hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccce--ee
Confidence 4444 45667889999999999999998 58999999999999999999999 8999999999999999999986 44
Q ss_pred CcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcch
Q 040109 178 NLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYP 257 (598)
Q Consensus 178 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 257 (598)
.++.++.+..|+.++..+|++++. |..+..+.+|..+++.+|.+...++.... . +.|++||...|.++ .+|+
T Consensus 129 l~~~i~~~~~l~dl~~~~N~i~sl---p~~~~~~~~l~~l~~~~n~l~~l~~~~i~---m-~~L~~ld~~~N~L~-tlP~ 200 (565)
T KOG0472|consen 129 LPDSIGRLLDLEDLDATNNQISSL---PEDMVNLSKLSKLDLEGNKLKALPENHIA---M-KRLKHLDCNSNLLE-TLPP 200 (565)
T ss_pred cCchHHHHhhhhhhhccccccccC---chHHHHHHHHHHhhccccchhhCCHHHHH---H-HHHHhcccchhhhh-cCCh
Confidence 566788999999999999999985 46788899999999999999998875433 2 88999999999887 8899
Q ss_pred hhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcchhhc-CCCCCcEEEcccCcCccchhhhhhhcC
Q 040109 258 WLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLG-NMSSLKMLVLSYNELRGELSEFIQNVS 336 (598)
Q Consensus 258 ~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 336 (598)
.++.+.+ |+.|++..|++. .+| .|.++..|++|+++.|+++-+|.... +++++..||+..|++.+ .|+.+.-+.
T Consensus 201 ~lg~l~~--L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke-~Pde~clLr 275 (565)
T KOG0472|consen 201 ELGGLES--LELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLR 275 (565)
T ss_pred hhcchhh--hHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc-CchHHHHhh
Confidence 9999999 999999999998 566 79999999999999999999997655 89999999999999985 566777776
Q ss_pred CCCCCCCCCCEEEccCccccccCCCCCCCCcCc
Q 040109 337 SGSTKNSSLEWLYLASNEITGTIPNLGGFPGML 369 (598)
Q Consensus 337 ~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~ 369 (598)
+|++||+|+|.+++..+.++++ .+.
T Consensus 276 -------sL~rLDlSNN~is~Lp~sLgnl-hL~ 300 (565)
T KOG0472|consen 276 -------SLERLDLSNNDISSLPYSLGNL-HLK 300 (565)
T ss_pred -------hhhhhcccCCccccCCcccccc-eee
Confidence 8999999999999998888887 443
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=9.3e-27 Score=244.72 Aligned_cols=368 Identities=24% Similarity=0.244 Sum_probs=251.3
Q ss_pred CCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCC
Q 040109 110 KLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLR 189 (598)
Q Consensus 110 ~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~ 189 (598)
+.-+|+.||+++|.+.. .|..+..+.+|+.|+++.|.|. ..|.+..++.+|++|+|.+|.+ ...+..+..+++|+
T Consensus 43 ~~v~L~~l~lsnn~~~~--fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l--~~lP~~~~~lknl~ 117 (1081)
T KOG0618|consen 43 KRVKLKSLDLSNNQISS--FPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRL--QSLPASISELKNLQ 117 (1081)
T ss_pred heeeeEEeecccccccc--CCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchh--hcCchhHHhhhccc
Confidence 34459999999999984 7888999999999999999998 7888999999999999999986 45566789999999
Q ss_pred EEEcCCCcCCCCCchhHhhcCCCCCcEEeccCc-------------------CCCCCCCChhhhccccCCcc-EEEccCC
Q 040109 190 YLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHC-------------------DLPPISTPSLLHLNYSKSLE-VIDLSNN 249 (598)
Q Consensus 190 ~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n-------------------~l~~~~~~~~~~~~~~~~L~-~L~Ls~n 249 (598)
+|+++.|.+..+|. .+..+..++.+..++| .+.+...... ..++ .|+|++|
T Consensus 118 ~LdlS~N~f~~~Pl---~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i------~~l~~~ldLr~N 188 (1081)
T KOG0618|consen 118 YLDLSFNHFGPIPL---VIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDI------YNLTHQLDLRYN 188 (1081)
T ss_pred ccccchhccCCCch---hHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcch------hhhheeeecccc
Confidence 99999999998653 4444444444555544 3333322111 2333 4888888
Q ss_pred CCCCCcchhhhhcC---------------ccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCC
Q 040109 250 YLTNSIYPWLLNVS---------------SNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSL 314 (598)
Q Consensus 250 ~l~~~~~~~l~~~~---------------~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L 314 (598)
.+.......+.++. ...++.|+.++|.++...+ -....+|++++++.|+++.+|.++..+.+|
T Consensus 189 ~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~~lp~wi~~~~nl 266 (1081)
T KOG0618|consen 189 EMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLSNLPEWIGACANL 266 (1081)
T ss_pred hhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccceeeecchhhhhcchHHHHhcccc
Confidence 77621111111110 0114555555555552222 123367888888888888888888888888
Q ss_pred cEEEcccCcCccchhhhhhhcCC----------------CCCCCCCCCEEEccCccccccCCCCCCCCc--Ccccccccc
Q 040109 315 KMLVLSYNELRGELSEFIQNVSS----------------GSTKNSSLEWLYLASNEITGTIPNLGGFPG--MLMPLIYFD 376 (598)
Q Consensus 315 ~~L~Ls~n~l~~~~~~~l~~l~~----------------g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~--l~~~~~~~~ 376 (598)
+.++..+|.++. +|..+....+ -..+.++|++|+|..|++....+.+..... +........
T Consensus 267 e~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n 345 (1081)
T KOG0618|consen 267 EALNANHNRLVA-LPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSN 345 (1081)
T ss_pred eEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhc
Confidence 888888888853 3443333330 000233555666666655422111000000 000000011
Q ss_pred ceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCC
Q 040109 377 KITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFG 456 (598)
Q Consensus 377 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 456 (598)
.+... ....-..+..|+.|.+.+|.++...-+.+.++.+|+.|+|++|++.......+.++..|+.|+||+|+++
T Consensus 346 ~l~~l----p~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~- 420 (1081)
T KOG0618|consen 346 KLSTL----PSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT- 420 (1081)
T ss_pred ccccc----ccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-
Confidence 11000 0011124667999999999999998889999999999999999999433446789999999999999997
Q ss_pred CCcccccCCCCCCEEeCCCCcceecCCCCCccCccCCCccCCCC
Q 040109 457 GIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNP 500 (598)
Q Consensus 457 ~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~gnp 500 (598)
.+|+.+.+++.|++|...+|++. ..|+..+++.+..++++.|.
T Consensus 421 ~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 421 TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNN 463 (1081)
T ss_pred hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccch
Confidence 88899999999999999999998 77888889999888888773
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=2.6e-22 Score=234.31 Aligned_cols=318 Identities=23% Similarity=0.259 Sum_probs=194.6
Q ss_pred ecCccccCCC-CCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCccc
Q 040109 103 TINPSLLKLQ-HLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDW 181 (598)
Q Consensus 103 ~l~~~l~~l~-~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 181 (598)
.+|..+..++ +|+.|++.++.+. .+|..+ .+.+|++|++++|.+. .++..+..+++|+.|+|+++... ...+.
T Consensus 579 ~lp~~~~~lp~~Lr~L~~~~~~l~--~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l--~~ip~ 652 (1153)
T PLN03210 579 HLPEGFDYLPPKLRLLRWDKYPLR--CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNL--KEIPD 652 (1153)
T ss_pred ecCcchhhcCcccEEEEecCCCCC--CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCc--CcCCc
Confidence 3444444443 4666666666555 255555 3566666777666665 45566666667777777665421 22233
Q ss_pred ccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhh
Q 040109 182 LSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLN 261 (598)
Q Consensus 182 l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 261 (598)
+..+++|++|++++|.... .+|..+..+++|+.|++++|......+... +. ++|+.|++++|.....+|..
T Consensus 653 ls~l~~Le~L~L~~c~~L~--~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i---~l-~sL~~L~Lsgc~~L~~~p~~--- 723 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLV--ELPSSIQYLNKLEDLDMSRCENLEILPTGI---NL-KSLYRLNLSGCSRLKSFPDI--- 723 (1153)
T ss_pred cccCCcccEEEecCCCCcc--ccchhhhccCCCCEEeCCCCCCcCccCCcC---CC-CCCCEEeCCCCCCccccccc---
Confidence 5666667777776654222 244556666677777776654333222111 22 66667777666544444432
Q ss_pred cCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCc--------chhhcCCCCCcEEEcccCcCccchhhhhh
Q 040109 262 VSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREV--------PKFLGNMSSLKMLVLSYNELRGELSEFIQ 333 (598)
Q Consensus 262 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~l--------p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~ 333 (598)
..+ |+.|++++|.+. .+|..+ .+++|++|++.++....+ |......++|+.|++++|...+.+|..++
T Consensus 724 ~~n--L~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~ 799 (1153)
T PLN03210 724 STN--ISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ 799 (1153)
T ss_pred cCC--cCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhh
Confidence 223 666667666665 344433 456666666655332111 11122345677777777776666777777
Q ss_pred hcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchh
Q 040109 334 NVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEE 413 (598)
Q Consensus 334 ~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 413 (598)
+++ +|+.|++++|...+.+|.. ..+++|+.|++++|.....+|..
T Consensus 800 ~L~-------~L~~L~Ls~C~~L~~LP~~----------------------------~~L~sL~~L~Ls~c~~L~~~p~~ 844 (1153)
T PLN03210 800 NLH-------KLEHLEIENCINLETLPTG----------------------------INLESLESLDLSGCSRLRTFPDI 844 (1153)
T ss_pred CCC-------CCCEEECCCCCCcCeeCCC----------------------------CCccccCEEECCCCCcccccccc
Confidence 666 7777777776544444421 13667888999988655455543
Q ss_pred hhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcc
Q 040109 414 IMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNF 478 (598)
Q Consensus 414 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 478 (598)
.++|+.|+|++|.++ .+|.++..+++|++|++++|+-...+|..+..+++|+.+++++|.-
T Consensus 845 ---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 845 ---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred ---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 367889999999888 7888888899999999988654456777788888899999988853
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.89 E-value=7.1e-23 Score=222.39 Aligned_cols=175 Identities=19% Similarity=0.254 Sum_probs=97.5
Q ss_pred CCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCCEE
Q 040109 112 QHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRYL 191 (598)
Q Consensus 112 ~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L 191 (598)
..-..|+++.+.++ .+|..+. ++|+.|++++|+++ .+|. .+++|++|++++|++... +. ..++|+.|
T Consensus 201 ~~~~~LdLs~~~Lt--sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~LtsL--P~---lp~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGESGLT--TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSL--PV---LPPGLLEL 267 (788)
T ss_pred CCCcEEEcCCCCCC--cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCcc--cC---ccccccee
Confidence 34566777777776 3666654 46777777777777 3553 246777777777776321 11 23567777
Q ss_pred EcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEE
Q 040109 192 DLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHID 271 (598)
Q Consensus 192 ~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~ 271 (598)
++++|.++.++.. ..+|+.|++++|+++..+. . +++|+.|++++|++++ +|.. ... |+.|+
T Consensus 268 ~Ls~N~L~~Lp~l------p~~L~~L~Ls~N~Lt~LP~----~---p~~L~~LdLS~N~L~~-Lp~l---p~~--L~~L~ 328 (788)
T PRK15387 268 SIFSNPLTHLPAL------PSGLCKLWIFGNQLTSLPV----L---PPGLQELSVSDNQLAS-LPAL---PSE--LCKLW 328 (788)
T ss_pred eccCCchhhhhhc------hhhcCEEECcCCccccccc----c---ccccceeECCCCcccc-CCCC---ccc--ccccc
Confidence 7777776664332 2456666677776665432 1 1556666666666653 2221 112 55555
Q ss_pred ccCCccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCc
Q 040109 272 LGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELR 325 (598)
Q Consensus 272 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~ 325 (598)
+++|.+++ +|.. ..+|++|++++|+++++|.. .++|+.|++++|.+.
T Consensus 329 Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~ 375 (788)
T PRK15387 329 AYNNQLTS-LPTL---PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT 375 (788)
T ss_pred cccCcccc-cccc---ccccceEecCCCccCCCCCC---Ccccceehhhccccc
Confidence 56665552 3321 13455555555555555532 234555555555554
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.89 E-value=1.2e-22 Score=220.56 Aligned_cols=263 Identities=24% Similarity=0.257 Sum_probs=209.1
Q ss_pred CCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcE
Q 040109 137 SKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTT 216 (598)
Q Consensus 137 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~ 216 (598)
.+-..|+++.+.++ .+|..+. ++|+.|++++|++.. .+ ..+++|++|++++|+++.+|.. .++|+.
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~--LP---~lp~~Lk~LdLs~N~LtsLP~l------p~sL~~ 266 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS--LP---ALPPELRTLEVSGNQLTSLPVL------PPGLLE 266 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC--CC---CCCCCCcEEEecCCccCcccCc------ccccce
Confidence 55788999999999 6788775 489999999999833 22 1358999999999999987642 468999
Q ss_pred EeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEee
Q 040109 217 LYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGL 296 (598)
Q Consensus 217 L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 296 (598)
|++++|.++..+. .+++|+.|++++|+++. +|.. .+. |+.|++++|++++ +|.. ..+|+.|++
T Consensus 267 L~Ls~N~L~~Lp~-------lp~~L~~L~Ls~N~Lt~-LP~~---p~~--L~~LdLS~N~L~~-Lp~l---p~~L~~L~L 329 (788)
T PRK15387 267 LSIFSNPLTHLPA-------LPSGLCKLWIFGNQLTS-LPVL---PPG--LQELSVSDNQLAS-LPAL---PSELCKLWA 329 (788)
T ss_pred eeccCCchhhhhh-------chhhcCEEECcCCcccc-cccc---ccc--cceeECCCCcccc-CCCC---ccccccccc
Confidence 9999999886543 12679999999999984 4542 345 9999999999985 4542 346889999
Q ss_pred ccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCcccccccc
Q 040109 297 LSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFD 376 (598)
Q Consensus 297 s~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~ 376 (598)
++|+++++|.. ..+|+.|++++|++++. |... . +|+.|++++|++++ +|.+
T Consensus 330 s~N~L~~LP~l---p~~Lq~LdLS~N~Ls~L-P~lp---~-------~L~~L~Ls~N~L~~-LP~l-------------- 380 (788)
T PRK15387 330 YNNQLTSLPTL---PSGLQELSVSDNQLASL-PTLP---S-------ELYKLWAYNNRLTS-LPAL-------------- 380 (788)
T ss_pred ccCcccccccc---ccccceEecCCCccCCC-CCCC---c-------ccceehhhcccccc-Cccc--------------
Confidence 99999998852 25899999999999864 3221 2 78999999999884 4421
Q ss_pred ceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCC
Q 040109 377 KITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFG 456 (598)
Q Consensus 377 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 456 (598)
+.+|+.|++++|+|+ .+|.. .++|+.|++++|+++ .+|... .+|+.|++++|+++
T Consensus 381 ----------------~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt- 435 (788)
T PRK15387 381 ----------------PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT- 435 (788)
T ss_pred ----------------ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-
Confidence 346899999999999 46643 368999999999998 577643 46889999999997
Q ss_pred CCcccccCCCCCCEEeCCCCcceecCCC
Q 040109 457 GIPSSLSRLRLLSVMDLSYNNFSGKIPK 484 (598)
Q Consensus 457 ~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 484 (598)
.+|..+.+++.|+.|++++|+++|.+|.
T Consensus 436 ~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 436 RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 7899999999999999999999987665
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=8.1e-22 Score=230.15 Aligned_cols=345 Identities=21% Similarity=0.236 Sum_probs=243.1
Q ss_pred ccccCCCCCCEEECcCCCC------CCCCcchhcCCCC-CCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCC
Q 040109 106 PSLLKLQHLTYLDLSWNNF------SGSPIPEFIGSLS-KLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGN 178 (598)
Q Consensus 106 ~~l~~l~~L~~L~Ls~n~l------~~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~ 178 (598)
.+|.++++|+.|.+..+.. .. .+|..+..++ +|+.|++.++.+. .+|..| ...+|++|++++|.+. ..
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~-~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~--~L 626 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRW-HLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE--KL 626 (1153)
T ss_pred HHHhcCccccEEEEeccccccccccee-ecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc--cc
Confidence 4588899999998876532 22 2666666664 6999999988887 677777 5789999999998872 33
Q ss_pred cccccCCCCCCEEEcCCCc-CCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcch
Q 040109 179 LDWLSYLSSLRYLDLGDCK-LSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYP 257 (598)
Q Consensus 179 ~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 257 (598)
+..+..+++|+.|+++++. +..+| .+..+++|+.|++++|......+..+..+ ++|+.|++++|.....+|.
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip----~ls~l~~Le~L~L~~c~~L~~lp~si~~L---~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIP----DLSMATNLETLKLSDCSSLVELPSSIQYL---NKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCC----ccccCCcccEEEecCCCCccccchhhhcc---CCCCEEeCCCCCCcCccCC
Confidence 4456788999999998864 44443 36778999999999887655544333322 8899999998765556676
Q ss_pred hhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcCC
Q 040109 258 WLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSS 337 (598)
Q Consensus 258 ~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 337 (598)
.+ ++++ |+.|++++|...+.+|.. .++|++|++++|.++.+|..+ .+++|+.|++.++..... +..+..+..
T Consensus 700 ~i-~l~s--L~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l-~~~~~~l~~ 771 (1153)
T PLN03210 700 GI-NLKS--LYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKL-WERVQPLTP 771 (1153)
T ss_pred cC-CCCC--CCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhhc-cccccccch
Confidence 55 5666 999999998766666643 467889999999988888755 578888888877542211 111110000
Q ss_pred -CCCCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhc
Q 040109 338 -GSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMD 416 (598)
Q Consensus 338 -g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 416 (598)
.....++|+.|++++|...+.+|. .++.+++|+.|++++|..-+.+|..+ +
T Consensus 772 ~~~~~~~sL~~L~Ls~n~~l~~lP~---------------------------si~~L~~L~~L~Ls~C~~L~~LP~~~-~ 823 (1153)
T PLN03210 772 LMTMLSPSLTRLFLSDIPSLVELPS---------------------------SIQNLHKLEHLEIENCINLETLPTGI-N 823 (1153)
T ss_pred hhhhccccchheeCCCCCCccccCh---------------------------hhhCCCCCCEEECCCCCCcCeeCCCC-C
Confidence 000123899999999877655552 23557788999999886544777665 7
Q ss_pred ccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcceecCCCC-CccCccCCCc
Q 040109 417 LVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKG-TQLQRFGAST 495 (598)
Q Consensus 417 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~ 495 (598)
+++|+.|++++|.....+|.. .++|+.|+|++|.++ .+|..+..+++|+.|++++|+-...+|.. ..++++..+.
T Consensus 824 L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~ 899 (1153)
T PLN03210 824 LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVD 899 (1153)
T ss_pred ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeee
Confidence 889999999998766566653 367889999999987 67888899999999999985433345543 4566666666
Q ss_pred cCCCCCC
Q 040109 496 YAGNPEL 502 (598)
Q Consensus 496 ~~gnp~l 502 (598)
+.+|+.+
T Consensus 900 l~~C~~L 906 (1153)
T PLN03210 900 FSDCGAL 906 (1153)
T ss_pred cCCCccc
Confidence 6666544
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=1.5e-23 Score=201.20 Aligned_cols=367 Identities=25% Similarity=0.249 Sum_probs=227.8
Q ss_pred EEEEEcCCCCCCCCCCCceecCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCC-CCCCCCCccccCCCCC
Q 040109 84 VLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSS-AQLAGPIPHQLGNLSR 162 (598)
Q Consensus 84 v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~ 162 (598)
.+.+.|.. |.++..-|.+|..+++||.||||+|.|+.+ -|+.|..+++|.+|-+.+ |+|+...-+.|+++..
T Consensus 69 tveirLdq------N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~s 141 (498)
T KOG4237|consen 69 TVEIRLDQ------NQISSIPPGAFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSS 141 (498)
T ss_pred ceEEEecc------CCcccCChhhccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHH
Confidence 44555544 556554455677777777777777777765 677777777776655544 7777555566777777
Q ss_pred CCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCC------------
Q 040109 163 LQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTP------------ 230 (598)
Q Consensus 163 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~------------ 230 (598)
|+.|.+.-|++ .-...+.|..+++|..|.+.+|.+..++. ..+..+..++.+.+..|.+...-..
T Consensus 142 lqrLllNan~i-~Cir~~al~dL~~l~lLslyDn~~q~i~~--~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i 218 (498)
T KOG4237|consen 142 LQRLLLNANHI-NCIRQDALRDLPSLSLLSLYDNKIQSICK--GTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI 218 (498)
T ss_pred HHHHhcChhhh-cchhHHHHHHhhhcchhcccchhhhhhcc--ccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence 77777777765 33444567777777777777777776544 4677777777777766652211110
Q ss_pred hhhhccc-------------------cCCccEE--Ecc-CCCCCCCc-chhhhhcCccCccEEEccCCccccccchhhcC
Q 040109 231 SLLHLNY-------------------SKSLEVI--DLS-NNYLTNSI-YPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGH 287 (598)
Q Consensus 231 ~~~~~~~-------------------~~~L~~L--~Ls-~n~l~~~~-~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~ 287 (598)
.+....+ ...++.+ .++ .+...+.. ...|..+++ |++|++++|++++.-+.+|..
T Consensus 219 etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~--L~~lnlsnN~i~~i~~~aFe~ 296 (498)
T KOG4237|consen 219 ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPN--LRKLNLSNNKITRIEDGAFEG 296 (498)
T ss_pred hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhccc--ceEeccCCCccchhhhhhhcc
Confidence 0000000 0111111 111 11111222 235677788 999999999999888889999
Q ss_pred CCCccEEeeccCCCCCcc-hhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCC-----
Q 040109 288 MASLRYLGLLSNRLREVP-KFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPN----- 361 (598)
Q Consensus 288 l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~----- 361 (598)
...+++|.|..|++..+. ..|.++..|+.|+|.+|+++...|..|..+. +|.+|++-.|.+....--
T Consensus 297 ~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~-------~l~~l~l~~Np~~CnC~l~wl~~ 369 (498)
T KOG4237|consen 297 AAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF-------SLSTLNLLSNPFNCNCRLAWLGE 369 (498)
T ss_pred hhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc-------eeeeeehccCcccCccchHHHHH
Confidence 999999999999998844 4788899999999999999998898888887 888898888877532110
Q ss_pred -------C--------CCCCcCccccccccceEEEEcCC---cc--cccccccccc-eEeccCCcCCCcCchhhhcccCC
Q 040109 362 -------L--------GGFPGMLMPLIYFDKITVTWKGG---QY--EYKSILGLIK-IIDLSSNKLGGEVPEEIMDLVGL 420 (598)
Q Consensus 362 -------l--------~~l~~l~~~~~~~~~~~~~~~~~---~~--~~~~~l~~L~-~L~Ls~n~l~~~~p~~l~~l~~L 420 (598)
. +.+..+.....-.........++ .. .-...++-+. +...|+..+. .+|..+. ..-
T Consensus 370 Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~ 446 (498)
T KOG4237|consen 370 WLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDV 446 (498)
T ss_pred HHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chh
Confidence 0 00001110000000000000000 00 0001111222 2334444444 5555443 245
Q ss_pred cEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCC
Q 040109 421 VALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYN 476 (598)
Q Consensus 421 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 476 (598)
++|++.+|.++ .+|.. .+.+| .+|+++|+++...-..|.++++|.+|-|++|
T Consensus 447 telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 447 TELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred HHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 78899999998 77876 56788 8999999987665668889999999999887
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.85 E-value=7.5e-23 Score=196.47 Aligned_cols=282 Identities=21% Similarity=0.158 Sum_probs=153.6
Q ss_pred CCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccC-cCCCCCCCChhhhccccCC
Q 040109 162 RLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGH-CDLPPISTPSLLHLNYSKS 240 (598)
Q Consensus 162 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~~~~ 240 (598)
.-..++|..|.| ...++..|+.+++|++|||++|.|+.+ -+++|.++++|..|-+.+ |+|+..+...|..+ ..
T Consensus 68 ~tveirLdqN~I-~~iP~~aF~~l~~LRrLdLS~N~Is~I--~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL---~s 141 (498)
T KOG4237|consen 68 ETVEIRLDQNQI-SSIPPGAFKTLHRLRRLDLSKNNISFI--APDAFKGLASLLSLVLYGNNKITDLPKGAFGGL---SS 141 (498)
T ss_pred cceEEEeccCCc-ccCChhhccchhhhceecccccchhhc--ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH---HH
Confidence 345677777776 455556677777777777777777776 346777777666655544 66666665544444 44
Q ss_pred ccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcch-hhcCCCCCcEEEc
Q 040109 241 LEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPK-FLGNMSSLKMLVL 319 (598)
Q Consensus 241 L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L 319 (598)
++.|.+.-|.+.-...+. |..++++..|.+.+|.+..++. .|..+..++.+.+
T Consensus 142 lqrLllNan~i~Cir~~a--------------------------l~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhl 195 (498)
T KOG4237|consen 142 LQRLLLNANHINCIRQDA--------------------------LRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHL 195 (498)
T ss_pred HHHHhcChhhhcchhHHH--------------------------HHHhhhcchhcccchhhhhhccccccchhccchHhh
Confidence 555555555444444444 4444444444444444444443 3444444444444
Q ss_pred ccCcCccc------------hhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcc
Q 040109 320 SYNELRGE------------LSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQY 387 (598)
Q Consensus 320 s~n~l~~~------------~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~ 387 (598)
..|.+... .|..++... ......+.++++...-+ .
T Consensus 196 A~np~icdCnL~wla~~~a~~~ietsgar-------c~~p~rl~~~Ri~q~~a--------------------------~ 242 (498)
T KOG4237|consen 196 AQNPFICDCNLPWLADDLAMNPIETSGAR-------CVSPYRLYYKRINQEDA--------------------------R 242 (498)
T ss_pred hcCccccccccchhhhHHhhchhhcccce-------ecchHHHHHHHhcccch--------------------------h
Confidence 44442110 000111100 11111111111110000 0
Q ss_pred cccccccccceEeccCCcCCCcCc-hhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCC
Q 040109 388 EYKSILGLIKIIDLSSNKLGGEVP-EEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLR 466 (598)
Q Consensus 388 ~~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 466 (598)
.+......+..=-.+.+...+..| ..|..+++|+.|+|++|++++.-+.+|.++..+++|.|..|++...-...|.++.
T Consensus 243 kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls 322 (498)
T KOG4237|consen 243 KFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLS 322 (498)
T ss_pred hhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccc
Confidence 011111111111122232333333 4577778888888888888877777788888888888888877655556777777
Q ss_pred CCCEEeCCCCcceecCCCC-CccCccCCCccCCCCCCCCCCCC
Q 040109 467 LLSVMDLSYNNFSGKIPKG-TQLQRFGASTYAGNPELCGLPLP 508 (598)
Q Consensus 467 ~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~gnp~lC~~~~~ 508 (598)
.|++|+|.+|+++..-|.. ....++..+.+.+|||.|+|.+.
T Consensus 323 ~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~ 365 (498)
T KOG4237|consen 323 GLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLA 365 (498)
T ss_pred cceeeeecCCeeEEEecccccccceeeeeehccCcccCccchH
Confidence 8888888888887666654 23556666777788888877654
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.84 E-value=2.5e-20 Score=204.00 Aligned_cols=253 Identities=19% Similarity=0.241 Sum_probs=119.9
Q ss_pred CcHHHHHHHHHHHhcCCCCCCCCCC----CCCCCCCCCCCCccC----------------eeeCCCCCcEEEEEcCCCCC
Q 040109 35 CLDEEKEALLAFKQGLIDESGILSS----WGREDEKRNCCKWRG----------------VRCSNKTGHVLGLDLRALSD 94 (598)
Q Consensus 35 ~~~~~~~~l~~~k~~~~~~~~~l~~----W~~~~~~~~~c~w~g----------------v~C~~~~~~v~~l~l~~~~~ 94 (598)
..++|...++++.+.+.-|. ...+ |. ..+++|.-.+ |.|. .+.|+.+...+...
T Consensus 60 ~~~~~~~~~~~~~~~l~~p~-~~~~~~~~~~---~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~--~~~vt~l~~~g~~~ 133 (754)
T PRK15370 60 ASPEEIKSKFECLRMLAFPA-YADNIQYSRG---GADQYCILSENSQEILSIVFNTEGYTVEGG--GKSVTYTRVTESEQ 133 (754)
T ss_pred CCHHHHHHHHHHHHHhcCCc-hhhccccccC---CCCcccccCCcchhhheeeecCCceEEecC--CCcccccccccccc
Confidence 46788889999988887554 3444 87 4667886554 4553 24455555544221
Q ss_pred CCCCCCcee--------------cC--------ccc-----cCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCC
Q 040109 95 SPVDALKGT--------------IN--------PSL-----LKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSA 147 (598)
Q Consensus 95 ~~~~~l~g~--------------l~--------~~l-----~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n 147 (598)
.+...-+.. -+ .++ +-..+...|+++++.++. +|..+. ++|+.|+|++|
T Consensus 134 ~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lts--LP~~Ip--~~L~~L~Ls~N 209 (754)
T PRK15370 134 ASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLTT--IPACIP--EQITTLILDNN 209 (754)
T ss_pred cccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcCc--CCcccc--cCCcEEEecCC
Confidence 110000000 00 000 112345566666666653 555442 45666666666
Q ss_pred CCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCC
Q 040109 148 QLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPI 227 (598)
Q Consensus 148 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 227 (598)
+++ .+|..+. .+|++|++++|.+.. .+..+ ..+|+.|++++|.+..+|. .+. .+|+.|++++|+++..
T Consensus 210 ~Lt-sLP~~l~--~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L~Ls~N~L~~LP~---~l~--s~L~~L~Ls~N~L~~L 277 (754)
T PRK15370 210 ELK-SLPENLQ--GNIKTLYANSNQLTS--IPATL--PDTIQEMELSINRITELPE---RLP--SALQSLDLFHNKISCL 277 (754)
T ss_pred CCC-cCChhhc--cCCCEEECCCCcccc--CChhh--hccccEEECcCCccCcCCh---hHh--CCCCEEECcCCccCcc
Confidence 666 4444432 356666666665521 11111 1345666666666555432 221 3455555555555543
Q ss_pred CCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcchh
Q 040109 228 STPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKF 307 (598)
Q Consensus 228 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~ 307 (598)
+.. ..++|+.|++++|++++ +|..+. .. |+.|++++|.++. +|..+. ++|+.|++++|.++.+|..
T Consensus 278 P~~------l~~sL~~L~Ls~N~Lt~-LP~~lp--~s--L~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~LP~~ 343 (754)
T PRK15370 278 PEN------LPEELRYLSVYDNSIRT-LPAHLP--SG--ITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTSLPAS 343 (754)
T ss_pred ccc------cCCCCcEEECCCCcccc-Ccccch--hh--HHHHHhcCCcccc-CCcccc--ccceeccccCCccccCChh
Confidence 221 01345555555555542 222221 12 4445555554442 222221 3444445555444444433
Q ss_pred hcCCCCCcEEEcccCcCc
Q 040109 308 LGNMSSLKMLVLSYNELR 325 (598)
Q Consensus 308 l~~l~~L~~L~Ls~n~l~ 325 (598)
+. ++|+.|++++|+++
T Consensus 344 l~--~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 344 LP--PELQVLDVSKNQIT 359 (754)
T ss_pred hc--CcccEEECCCCCCC
Confidence 32 34444444444443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=2.9e-19 Score=195.66 Aligned_cols=183 Identities=27% Similarity=0.436 Sum_probs=95.0
Q ss_pred CccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEc
Q 040109 240 SLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVL 319 (598)
Q Consensus 240 ~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 319 (598)
+|+.|++++|.+. .+|..+. .. |+.|++++|+++ .+|..+. ++|+.|++++|+++.+|..+. ++|+.|++
T Consensus 242 ~L~~L~Ls~N~L~-~LP~~l~--s~--L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~L 311 (754)
T PRK15370 242 TIQEMELSINRIT-ELPERLP--SA--LQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNV 311 (754)
T ss_pred cccEEECcCCccC-cCChhHh--CC--CCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccch--hhHHHHHh
Confidence 4555555555544 3343332 12 555555555555 2344332 355666666666655554332 34566666
Q ss_pred ccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceE
Q 040109 320 SYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKII 399 (598)
Q Consensus 320 s~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 399 (598)
++|.++.. |..+. + +|+.|++++|.+++ +|. ..+++|+.|
T Consensus 312 s~N~Lt~L-P~~l~--~-------sL~~L~Ls~N~Lt~-LP~-----------------------------~l~~sL~~L 351 (754)
T PRK15370 312 QSNSLTAL-PETLP--P-------GLKTLEAGENALTS-LPA-----------------------------SLPPELQVL 351 (754)
T ss_pred cCCccccC-Ccccc--c-------cceeccccCCcccc-CCh-----------------------------hhcCcccEE
Confidence 66665542 22111 1 56666666666553 221 002356666
Q ss_pred eccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccc----cCCCCCCEEeCCC
Q 040109 400 DLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSL----SRLRLLSVMDLSY 475 (598)
Q Consensus 400 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l----~~l~~L~~L~ls~ 475 (598)
++++|+++ .+|..+. ++|+.|+|++|+++ .+|..+. .+|+.|++++|+++ .+|+.+ ..++.+..|++.+
T Consensus 352 ~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~ 424 (754)
T PRK15370 352 DVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEY 424 (754)
T ss_pred ECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeC
Confidence 66666665 4555442 46666666666666 4555443 25666666666665 344333 3345666667777
Q ss_pred Ccce
Q 040109 476 NNFS 479 (598)
Q Consensus 476 N~l~ 479 (598)
|+++
T Consensus 425 Npls 428 (754)
T PRK15370 425 NPFS 428 (754)
T ss_pred CCcc
Confidence 7664
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.78 E-value=2e-19 Score=182.60 Aligned_cols=58 Identities=22% Similarity=0.212 Sum_probs=37.4
Q ss_pred EEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCC----CccccCCCCCCCEEEccCCCC
Q 040109 116 YLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGP----IPHQLGNLSRLQVLDLRFNNL 173 (598)
Q Consensus 116 ~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l 173 (598)
.|+|+.+.+++...+..+..+.+|++|+++++.++.. ++..+...++|++|+++++.+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~ 63 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNET 63 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccccc
Confidence 4667777776444556666677778888877777532 344455666677777776654
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=8.8e-19 Score=177.92 Aligned_cols=61 Identities=23% Similarity=0.153 Sum_probs=36.0
Q ss_pred EEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCC--CchhHhhcCCCCCcEEeccCcCCC
Q 040109 165 VLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKF--SNWFQVLSNLRSLTTLYLGHCDLP 225 (598)
Q Consensus 165 ~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~l~~l~~L~~L~l~~n~l~ 225 (598)
.|+|..+.+........+..+.+|++|+++++.++.. ..++..+...++|++++++++.+.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~ 64 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETG 64 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccC
Confidence 3566666653333344456666777777777776532 123445556666777777766654
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.71 E-value=1.4e-19 Score=154.77 Aligned_cols=153 Identities=24% Similarity=0.453 Sum_probs=101.9
Q ss_pred ccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCC
Q 040109 267 VDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLE 346 (598)
Q Consensus 267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~ 346 (598)
++.|.+++|+++ .+|..+..+.+|+.|++++|+++++|..+..+++|+.|+++-|++. ..|..|+.++ .|+
T Consensus 35 ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p-------~le 105 (264)
T KOG0617|consen 35 ITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP-------ALE 105 (264)
T ss_pred hhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCccccCCCc-------hhh
Confidence 666777777777 5666777788888888888888888888888888888888877765 4555566555 666
Q ss_pred EEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECc
Q 040109 347 WLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLS 426 (598)
Q Consensus 347 ~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 426 (598)
.|||.+|++... ..|..|..++.|+.|+|+
T Consensus 106 vldltynnl~e~--------------------------------------------------~lpgnff~m~tlralyl~ 135 (264)
T KOG0617|consen 106 VLDLTYNNLNEN--------------------------------------------------SLPGNFFYMTTLRALYLG 135 (264)
T ss_pred hhhccccccccc--------------------------------------------------cCCcchhHHHHHHHHHhc
Confidence 666666665521 344555555666666666
Q ss_pred CCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCccee
Q 040109 427 NNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFSG 480 (598)
Q Consensus 427 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 480 (598)
+|.+. .+|..++++++|+.|.+..|.+. .+|..++.+++|++|++.+|+++-
T Consensus 136 dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 136 DNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred CCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeee
Confidence 66665 55666666666666666666654 556666666666666666666653
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.64 E-value=6.6e-16 Score=168.79 Aligned_cols=118 Identities=36% Similarity=0.654 Sum_probs=107.0
Q ss_pred ccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCC
Q 040109 395 LIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLS 474 (598)
Q Consensus 395 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 474 (598)
.++.|+|++|.+.|.+|..+..+++|+.|+|++|++.|.+|..++.+++|+.|+|++|+++|.+|+.+.++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceecCCCCC--ccCccCCCccCCCCCCCCCCCCCCCC
Q 040109 475 YNNFSGKIPKGT--QLQRFGASTYAGNPELCGLPLPNKCL 512 (598)
Q Consensus 475 ~N~l~~~~p~~~--~~~~l~~~~~~gnp~lC~~~~~~~c~ 512 (598)
+|+++|.+|... ....+..+.+.+|+.+|+.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999752 23345567899999999987655673
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1.8e-17 Score=141.91 Aligned_cols=162 Identities=26% Similarity=0.462 Sum_probs=131.5
Q ss_pred CCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEE
Q 040109 239 KSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLV 318 (598)
Q Consensus 239 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 318 (598)
..++.|.+++|+++ .+|+.+..+.+ |+.|++++|+++ .+|..++.+++|+.|+++-|++..+|..|+.++.|+.||
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~n--levln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKN--LEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhh--hhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 56777788888887 67778888888 999999999998 688899999999999999999999999999999999999
Q ss_pred cccCcCccc-hhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccc
Q 040109 319 LSYNELRGE-LSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIK 397 (598)
Q Consensus 319 Ls~n~l~~~-~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 397 (598)
+++|.+.+. +|..|.. +..|+
T Consensus 109 ltynnl~e~~lpgnff~----------------------------------------------------------m~tlr 130 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFY----------------------------------------------------------MTTLR 130 (264)
T ss_pred ccccccccccCCcchhH----------------------------------------------------------HHHHH
Confidence 999977542 2222222 34566
Q ss_pred eEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCC
Q 040109 398 IIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRL 465 (598)
Q Consensus 398 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 465 (598)
.|+|++|.+. .+|..++++++|+.|.+..|.+. .+|..++.++.|++|.+.+|+++ .+|..++++
T Consensus 131 alyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 131 ALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL 195 (264)
T ss_pred HHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence 6777777777 78888888888998988888888 78888888888999999999887 666665544
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.55 E-value=3.5e-14 Score=155.31 Aligned_cols=151 Identities=32% Similarity=0.465 Sum_probs=121.7
Q ss_pred cCCcHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC----CCccCeeeCC--CC--CcEEEEEcCCCCCCCCCCCceec
Q 040109 33 ISCLDEEKEALLAFKQGLIDESGILSSWGREDEKRNC----CKWRGVRCSN--KT--GHVLGLDLRALSDSPVDALKGTI 104 (598)
Q Consensus 33 ~~~~~~~~~~l~~~k~~~~~~~~~l~~W~~~~~~~~~----c~w~gv~C~~--~~--~~v~~l~l~~~~~~~~~~l~g~l 104 (598)
....++|..||+++|+++.++.. .+|.. ..| |.|.||.|.. .. .+|+.|+|++ +.+.|.+
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~g----~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~------n~L~g~i 434 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLR--FGWNG----DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN------QGLRGFI 434 (623)
T ss_pred cccCchHHHHHHHHHHhcCCccc--CCCCC----CCCCCcccccccceeeccCCCCceEEEEEECCC------CCccccC
Confidence 45677899999999999976542 48962 333 3799999952 22 2589999998 8899999
Q ss_pred CccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccC
Q 040109 105 NPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSY 184 (598)
Q Consensus 105 ~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~ 184 (598)
|+.++.+++|+.|+|++|.+.+. +|..++.+++|++|+|++|++++.+|+.++++++|++|+|++|.+ ....+..+..
T Consensus 435 p~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l-~g~iP~~l~~ 512 (623)
T PLN03150 435 PNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL-SGRVPAALGG 512 (623)
T ss_pred CHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc-cccCChHHhh
Confidence 99999999999999999999986 999999999999999999999999999999999999999999987 3333333443
Q ss_pred -CCCCCEEEcCCCc
Q 040109 185 -LSSLRYLDLGDCK 197 (598)
Q Consensus 185 -l~~L~~L~L~~n~ 197 (598)
..++..+++.+|.
T Consensus 513 ~~~~~~~l~~~~N~ 526 (623)
T PLN03150 513 RLLHRASFNFTDNA 526 (623)
T ss_pred ccccCceEEecCCc
Confidence 2455666766664
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.32 E-value=6.9e-14 Score=141.18 Aligned_cols=169 Identities=28% Similarity=0.430 Sum_probs=88.8
Q ss_pred EEEccCCccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEE
Q 040109 269 HIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWL 348 (598)
Q Consensus 269 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L 348 (598)
..|++.|++. .+|..+..+..|+.+.++.|.+..+|..+.++..|++|+|+.|+++ .+|..+..++ |+.|
T Consensus 79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp--------Lkvl 148 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP--------LKVL 148 (722)
T ss_pred hhhccccccc-cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh-cCChhhhcCc--------ceeE
Confidence 3445555554 4455555555555555555555555555555555555555555554 3344444444 5555
Q ss_pred EccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCC
Q 040109 349 YLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNN 428 (598)
Q Consensus 349 ~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N 428 (598)
-+++|+++...+.+ +....|..||.+.|++. .+|..++.+.+|+.|++..|
T Consensus 149 i~sNNkl~~lp~~i----------------------------g~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn 199 (722)
T KOG0532|consen 149 IVSNNKLTSLPEEI----------------------------GLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRN 199 (722)
T ss_pred EEecCccccCCccc----------------------------ccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhh
Confidence 55555555322221 12334555555555555 45555555555555555555
Q ss_pred cCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcce
Q 040109 429 NLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFS 479 (598)
Q Consensus 429 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 479 (598)
++. .+|..+..+ .|..||+|.|+++ .+|..|.+|+.|++|-|.+|+++
T Consensus 200 ~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 200 HLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 555 444445433 3555555555554 55555555555555555555554
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.25 E-value=4.2e-13 Score=135.58 Aligned_cols=169 Identities=24% Similarity=0.351 Sum_probs=91.5
Q ss_pred ccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcc
Q 040109 241 LEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLS 320 (598)
Q Consensus 241 L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls 320 (598)
|+.+.+..|.+. .+|+.+.++.. |++|+++.|+++ ..|..++.++ |+.|.+++|+++.+|..++....|..||.+
T Consensus 100 Le~liLy~n~~r-~ip~~i~~L~~--lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s 174 (722)
T KOG0532|consen 100 LESLILYHNCIR-TIPEAICNLEA--LTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVS 174 (722)
T ss_pred HHHHHHHhccce-ecchhhhhhhH--HHHhhhccchhh-cCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhh
Confidence 344444444443 44455555555 555555555555 3444444433 555555566655555555555555556665
Q ss_pred cCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEe
Q 040109 321 YNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIID 400 (598)
Q Consensus 321 ~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 400 (598)
.|++... |..++.+. +|+.|.+..|++....+.+..+ .|..||
T Consensus 175 ~nei~sl-psql~~l~-------slr~l~vrRn~l~~lp~El~~L-----------------------------pLi~lD 217 (722)
T KOG0532|consen 175 KNEIQSL-PSQLGYLT-------SLRDLNVRRNHLEDLPEELCSL-----------------------------PLIRLD 217 (722)
T ss_pred hhhhhhc-hHHhhhHH-------HHHHHHHhhhhhhhCCHHHhCC-----------------------------ceeeee
Confidence 5555432 33334443 4555555555554332222111 256677
Q ss_pred ccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCC---CCCCeeeCCCCc
Q 040109 401 LSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQL---KSLDFLDLSINH 453 (598)
Q Consensus 401 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l---~~L~~L~Ls~N~ 453 (598)
+|.|+++ .+|-.|.+|..|++|-|.+|.+. ..|..++.. .-.++|+..-++
T Consensus 218 fScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 218 FSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred cccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 7777776 67777777777777777777777 555555432 234556666553
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.3e-12 Score=128.33 Aligned_cols=113 Identities=27% Similarity=0.307 Sum_probs=58.8
Q ss_pred CCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCC--CCccccCCCCCCCEEEccCCCCCCCCCcccccCCCC
Q 040109 110 KLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAG--PIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSS 187 (598)
Q Consensus 110 ~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~ 187 (598)
+++.|+...|.++.+...........|++++.|||+.|-+.. .+......+++|+.|+++.|++........-..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 455666666666665532111344556666666666665542 122233456666666666666533222222234556
Q ss_pred CCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcC
Q 040109 188 LRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCD 223 (598)
Q Consensus 188 L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~ 223 (598)
|+.|.|+.|.++. .++...+..+|+|+.|++..|.
T Consensus 199 lK~L~l~~CGls~-k~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 199 LKQLVLNSCGLSW-KDVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred hheEEeccCCCCH-HHHHHHHHhCCcHHHhhhhccc
Confidence 6666666666552 2333444555566666665553
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.22 E-value=2.1e-11 Score=127.56 Aligned_cols=84 Identities=38% Similarity=0.502 Sum_probs=44.3
Q ss_pred cceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCC
Q 040109 396 IKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSY 475 (598)
Q Consensus 396 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 475 (598)
|++|++++|.+. ..+..+.++.++..+.+++|++. .++..++.+++++.|++++|+++... . +..+.+++.|++++
T Consensus 211 L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~-~-~~~~~~l~~L~~s~ 286 (394)
T COG4886 211 LEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSIS-S-LGSLTNLRELDLSG 286 (394)
T ss_pred hhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccccc-c-ccccCccCEEeccC
Confidence 455555555332 34445555555555555555555 33455555555666666666655222 2 55555666666666
Q ss_pred CcceecCC
Q 040109 476 NNFSGKIP 483 (598)
Q Consensus 476 N~l~~~~p 483 (598)
|.+....|
T Consensus 287 n~~~~~~~ 294 (394)
T COG4886 287 NSLSNALP 294 (394)
T ss_pred ccccccch
Confidence 65554433
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=4.6e-12 Score=124.44 Aligned_cols=165 Identities=21% Similarity=0.226 Sum_probs=111.6
Q ss_pred CCCCCCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccc
Q 040109 158 GNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNY 237 (598)
Q Consensus 158 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 237 (598)
.++.+|+...|.++.+...+.......+++++.|||+.|-+..+..+......+|+|+.|+++.|++.......... .
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~--~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL--L 195 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh--h
Confidence 45677777777777653333224567788888888888888776556677778888899999888876544321111 2
Q ss_pred cCCccEEEccCCCCCCC-cchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcc--hhhcCCCCC
Q 040109 238 SKSLEVIDLSNNYLTNS-IYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVP--KFLGNMSSL 314 (598)
Q Consensus 238 ~~~L~~L~Ls~n~l~~~-~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L 314 (598)
.+.|+.|.++.|.++.. +...+..+++ ++.|++..|.....-.....-++.|++|||++|++...+ ...+.++.|
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPs--l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPS--LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGL 273 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCc--HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccch
Confidence 27788888888888742 2233445666 888888888533233334455677888888888887755 356677888
Q ss_pred cEEEcccCcCcc
Q 040109 315 KMLVLSYNELRG 326 (598)
Q Consensus 315 ~~L~Ls~n~l~~ 326 (598)
..|+++.+.+..
T Consensus 274 ~~Lnls~tgi~s 285 (505)
T KOG3207|consen 274 NQLNLSSTGIAS 285 (505)
T ss_pred hhhhccccCcch
Confidence 888887776653
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.17 E-value=5e-11 Score=124.70 Aligned_cols=156 Identities=36% Similarity=0.504 Sum_probs=101.4
Q ss_pred ccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCC
Q 040109 267 VDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLE 346 (598)
Q Consensus 267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~ 346 (598)
|+.|++++|.+. .+|..+..+++|+.|++++|++..+|......+.|+.|++++|++....+. ..... .|+
T Consensus 142 L~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~-~~~~~-------~L~ 212 (394)
T COG4886 142 LKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPE-IELLS-------ALE 212 (394)
T ss_pred cccccccccchh-hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchh-hhhhh-------hhh
Confidence 556666666665 344456667777777777777777666555667777777777776644332 22222 477
Q ss_pred EEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECc
Q 040109 347 WLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLS 426 (598)
Q Consensus 347 ~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 426 (598)
++++++|.....+. ....+.++..+.+.+|++. ..+..+..+++++.|+++
T Consensus 213 ~l~~~~N~~~~~~~----------------------------~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s 263 (394)
T COG4886 213 ELDLSNNSIIELLS----------------------------SLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLS 263 (394)
T ss_pred hhhhcCCcceecch----------------------------hhhhcccccccccCCceee-eccchhccccccceeccc
Confidence 77777775332221 1233445666667777776 446777788888888888
Q ss_pred CCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccc
Q 040109 427 NNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSL 462 (598)
Q Consensus 427 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 462 (598)
+|.++ .++. ++.+.+++.|++++|.++...|...
T Consensus 264 ~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 264 NNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred ccccc-cccc-ccccCccCEEeccCccccccchhhh
Confidence 88888 4444 7788888888888888876665543
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.13 E-value=3.1e-11 Score=108.60 Aligned_cols=131 Identities=31% Similarity=0.300 Sum_probs=40.2
Q ss_pred cCCCCCCEEECcCCCCCCCCcchhcC-CCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCC
Q 040109 109 LKLQHLTYLDLSWNNFSGSPIPEFIG-SLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSS 187 (598)
Q Consensus 109 ~~l~~L~~L~Ls~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~ 187 (598)
.+...++.|+|++|.|+.. +.++ .+.+|+.|++++|.|+. +. .+..+++|++|++++|++... .......+++
T Consensus 16 ~n~~~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~ 89 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred ccccccccccccccccccc---cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCcc-ccchHHhCCc
Confidence 3444567777777777642 2344 46677777777777763 32 466677777777777776221 1111234667
Q ss_pred CCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEc
Q 040109 188 LRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDL 246 (598)
Q Consensus 188 L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L 246 (598)
|++|++++|++..+.++ ..+..+++|+.|++.+|+++............+|+|+.||-
T Consensus 90 L~~L~L~~N~I~~l~~l-~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 90 LQELYLSNNKISDLNEL-EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --EEE-TTS---SCCCC-GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCEEECcCCcCCChHHh-HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 77777777777665442 45566677777777777665443321122222355555543
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.11 E-value=1.6e-11 Score=117.54 Aligned_cols=231 Identities=29% Similarity=0.285 Sum_probs=119.0
Q ss_pred ccccCCCCCCEEECcCCCCCCC---CcchhcCCCCCCCEEECCCC---CCCCCCcc-------ccCCCCCCCEEEccCCC
Q 040109 106 PSLLKLQHLTYLDLSWNNFSGS---PIPEFIGSLSKLSELALSSA---QLAGPIPH-------QLGNLSRLQVLDLRFNN 172 (598)
Q Consensus 106 ~~l~~l~~L~~L~Ls~n~l~~~---~~p~~l~~l~~L~~L~Ls~n---~l~~~~p~-------~l~~l~~L~~L~Ls~n~ 172 (598)
+.+-.+..+++++||+|.+... .+...+.+.++|+..++++- +....+|+ .+-.+++|++||||.|.
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 3455678899999999988642 13344667788888888763 22233443 33466788888888887
Q ss_pred CCCCCCcc---cccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCC
Q 040109 173 LFSSGNLD---WLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNN 249 (598)
Q Consensus 173 l~~~~~~~---~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n 249 (598)
+...+... .+..+..|++|.|.+|.+..... ..++. .|.+|. .+ ......+.|+++...+|
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag--~~l~~--al~~l~--~~----------kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAG--GRLGR--ALFELA--VN----------KKAASKPKLRVFICGRN 167 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHH--HHHHH--HHHHHH--HH----------hccCCCcceEEEEeecc
Confidence 73333221 24455566666666665543210 11000 000010 00 00011145555555555
Q ss_pred CCCCCc----chhhhhcCccCccEEEccCCcccc----ccchhhcCCCCccEEeeccCCCCC-----cchhhcCCCCCcE
Q 040109 250 YLTNSI----YPWLLNVSSNLVDHIDLGSNRLHG----SIPVAFGHMASLRYLGLLSNRLRE-----VPKFLGNMSSLKM 316 (598)
Q Consensus 250 ~l~~~~----~~~l~~~~~~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~ 316 (598)
.+.... ...+...+. |+.+.+..|.|.. .+...+.++++|+.|||.+|-++. +...+..+++|+.
T Consensus 168 rlen~ga~~~A~~~~~~~~--leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPT--LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccccccHHHHHHHHHhccc--cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 554321 122233333 5555555555431 123345666777777777776653 3445666667777
Q ss_pred EEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCcccc
Q 040109 317 LVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEIT 356 (598)
Q Consensus 317 L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~ 356 (598)
|++++|.+.......+...-.. .+|+|+.|.+.+|.++
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~--~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKE--SAPSLEVLELAGNEIT 283 (382)
T ss_pred ecccccccccccHHHHHHHHhc--cCCCCceeccCcchhH
Confidence 7777776655444333221100 1235555555555554
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.09 E-value=2.9e-11 Score=115.85 Aligned_cols=234 Identities=22% Similarity=0.215 Sum_probs=144.9
Q ss_pred CcEEEEEcCCCCCCCCCCCce----ecCccccCCCCCCEEECcCCC---CCCCCcchh-------cCCCCCCCEEECCCC
Q 040109 82 GHVLGLDLRALSDSPVDALKG----TINPSLLKLQHLTYLDLSWNN---FSGSPIPEF-------IGSLSKLSELALSSA 147 (598)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~l~g----~l~~~l~~l~~L~~L~Ls~n~---l~~~~~p~~-------l~~l~~L~~L~Ls~n 147 (598)
..++.++|+| +.+.. .+.+.+.+.++|+..++|.-. +.. .+|.. +...++|++||||.|
T Consensus 30 ~s~~~l~lsg------nt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~-Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 30 DSLTKLDLSG------NTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKD-EIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred CceEEEeccC------CchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHH-HHHHHHHHHHHHHhcCCceeEeecccc
Confidence 4578899998 55532 344567778899999988632 121 24433 445679999999999
Q ss_pred CCCCCCccc----cCCCCCCCEEEccCCCCCCCCC------------cccccCCCCCCEEEcCCCcCCCCC--chhHhhc
Q 040109 148 QLAGPIPHQ----LGNLSRLQVLDLRFNNLFSSGN------------LDWLSYLSSLRYLDLGDCKLSKFS--NWFQVLS 209 (598)
Q Consensus 148 ~l~~~~p~~----l~~l~~L~~L~Ls~n~l~~~~~------------~~~l~~l~~L~~L~L~~n~l~~~~--~~~~~l~ 209 (598)
-+...-+.. +..+..|++|.|.+|.+..... ......-++|+++..++|++...+ .+...+.
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~ 182 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ 182 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence 887554443 3568899999999998722111 112455678999999999887643 2456677
Q ss_pred CCCCCcEEeccCcCCCCCCC-ChhhhccccCCccEEEccCCCCCCCcc----hhhhhcCccCccEEEccCCccccccchh
Q 040109 210 NLRSLTTLYLGHCDLPPIST-PSLLHLNYSKSLEVIDLSNNYLTNSIY----PWLLNVSSNLVDHIDLGSNRLHGSIPVA 284 (598)
Q Consensus 210 ~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~----~~l~~~~~~~L~~L~L~~n~l~~~~p~~ 284 (598)
..+.|+.+.+..|.|..... .....+..+++|++|||.+|.++.... ..+..++. |+.|++++|.+...-...
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~--L~El~l~dcll~~~Ga~a 260 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH--LRELNLGDCLLENEGAIA 260 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccch--heeecccccccccccHHH
Confidence 78889999999888765433 112233334788888888888775332 33334444 666666666665432222
Q ss_pred h-----cCCCCccEEeeccCCCCC-----cchhhcCCCCCcEEEcccCcC
Q 040109 285 F-----GHMASLRYLGLLSNRLRE-----VPKFLGNMSSLKMLVLSYNEL 324 (598)
Q Consensus 285 l-----~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l 324 (598)
+ ...++|++|.+.+|.++. +...+...+.|+.|+|++|++
T Consensus 261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 2 124556666666665553 222334455555555555555
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.08 E-value=1.7e-11 Score=114.64 Aligned_cols=131 Identities=24% Similarity=0.279 Sum_probs=76.5
Q ss_pred CCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCC
Q 040109 287 HMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFP 366 (598)
Q Consensus 287 ~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~ 366 (598)
..+.|+++||++|.++.+..++.-.|.++.|++|+|.+..... ++.++ +|+.||||+|.++
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~-------~L~~LDLS~N~Ls---------- 342 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELP-------QLQLLDLSGNLLA---------- 342 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcc-------cceEeecccchhH----------
Confidence 3456777777777777777777777777777777777654321 33333 4555555555444
Q ss_pred cCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCe
Q 040109 367 GMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDF 446 (598)
Q Consensus 367 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 446 (598)
.+..+-.++-+.+.|.|+.|.+.. -+.++.+-+|..
T Consensus 343 ------------------------------------------~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvn 378 (490)
T KOG1259|consen 343 ------------------------------------------ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVN 378 (490)
T ss_pred ------------------------------------------hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhhee
Confidence 333333445555666666665542 234555566666
Q ss_pred eeCCCCccCCCC-cccccCCCCCCEEeCCCCccee
Q 040109 447 LDLSINHFFGGI-PSSLSRLRLLSVMDLSYNNFSG 480 (598)
Q Consensus 447 L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls~N~l~~ 480 (598)
||+++|+|...- -..++++|-|+.+.+.+|++.+
T Consensus 379 LDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 379 LDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred ccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 666666664221 1356666667777777777663
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=3.9e-10 Score=101.51 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=12.1
Q ss_pred hcCCCCccEEeeccCCCCCcch----hhcCCCCCcEEE
Q 040109 285 FGHMASLRYLGLLSNRLREVPK----FLGNMSSLKMLV 318 (598)
Q Consensus 285 l~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~ 318 (598)
+..+++|+.|++.+|+++..+. .+..+|+|+.||
T Consensus 109 L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 109 LSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp GGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred HHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 3344555555555555543221 234445555554
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.94 E-value=2.9e-10 Score=106.61 Aligned_cols=207 Identities=21% Similarity=0.273 Sum_probs=121.3
Q ss_pred cCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCccccc
Q 040109 104 INPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLS 183 (598)
Q Consensus 104 l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~ 183 (598)
+|-.+.-+++|+.+.+|.+.-.. +-+....-+.|+++...+..++. .|. +--...+....-+.-..........+.
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~~--i~~~~~~kptl~t~~v~~s~~~~-~~~-l~pe~~~~D~~~~E~~t~~G~~~~~~d 281 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTEN--IVDIELLKPTLQTICVHNTTIQD-VPS-LLPETILADPSGSEPSTSNGSALVSAD 281 (490)
T ss_pred cccchHHhhhhheeeeeccchhh--eeceeecCchhheeeeecccccc-ccc-ccchhhhcCccCCCCCccCCceEEecc
Confidence 34445566777777777764332 22323334677888777665541 111 111111111111110000001111233
Q ss_pred CCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcC
Q 040109 184 YLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVS 263 (598)
Q Consensus 184 ~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~ 263 (598)
.-+.|+++||++|.|+.+ -.+..-.|.++.|++++|.+..... ...+ ++|+.|||++|.++ .+..|-..+.
T Consensus 282 TWq~LtelDLS~N~I~~i---DESvKL~Pkir~L~lS~N~i~~v~n--La~L---~~L~~LDLS~N~Ls-~~~Gwh~KLG 352 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQI---DESVKLAPKLRRLILSQNRIRTVQN--LAEL---PQLQLLDLSGNLLA-ECVGWHLKLG 352 (490)
T ss_pred hHhhhhhccccccchhhh---hhhhhhccceeEEeccccceeeehh--hhhc---ccceEeecccchhH-hhhhhHhhhc
Confidence 335677888888877764 2456667788888888888776544 3332 77888888888776 3444545555
Q ss_pred ccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcc--hhhcCCCCCcEEEcccCcCccc
Q 040109 264 SNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVP--KFLGNMSSLKMLVLSYNELRGE 327 (598)
Q Consensus 264 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~~ 327 (598)
+ ++.|.+++|.+... ..++.+-+|..||+++|++..+. ..++++|.|+.+.|.+|++.+.
T Consensus 353 N--IKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 353 N--IKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred C--EeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 6 77788888877532 34566677888888888887643 4677788888888888887654
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.86 E-value=1.3e-09 Score=122.14 Aligned_cols=110 Identities=34% Similarity=0.369 Sum_probs=72.9
Q ss_pred cccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCC
Q 040109 107 SLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLS 186 (598)
Q Consensus 107 ~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~ 186 (598)
.|..++.|+.|||++|.--+ .+|..++.|-+||+|+++++.+. .+|..++++.+|.+||+..+.. ....+.....++
T Consensus 566 ff~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~-l~~~~~i~~~L~ 642 (889)
T KOG4658|consen 566 FFRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGR-LESIPGILLELQ 642 (889)
T ss_pred HHhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccc-cccccchhhhcc
Confidence 36668888888888765444 48888888888888888888887 7788888888888888887764 222244455588
Q ss_pred CCCEEEcCCCcCCCCCchhHhhcCCCCCcEEec
Q 040109 187 SLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYL 219 (598)
Q Consensus 187 ~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l 219 (598)
+|++|.+..............+..+.+|+.+..
T Consensus 643 ~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 643 SLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred cccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 888888766542221122334445555555544
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.82 E-value=1.8e-09 Score=79.90 Aligned_cols=59 Identities=41% Similarity=0.528 Sum_probs=27.9
Q ss_pred ccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCc
Q 040109 395 LIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINH 453 (598)
Q Consensus 395 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 453 (598)
+|++|++++|+++...+..|..+++|++|++++|+++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34445555555443333444444445555555444444444444444444444444444
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.82 E-value=7.5e-09 Score=116.12 Aligned_cols=59 Identities=27% Similarity=0.330 Sum_probs=36.2
Q ss_pred cccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCccc-CCcccCCCCCCCeeeCC
Q 040109 392 ILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQ-ITPRIGQLKSLDFLDLS 450 (598)
Q Consensus 392 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls 450 (598)
..++|+.|.+..+.....+.+....+..+..+-+..+.+.+. .-...++++++..+.++
T Consensus 768 f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~ 827 (889)
T KOG4658|consen 768 FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLS 827 (889)
T ss_pred ccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccC
Confidence 466788888887776656666666677777666666666654 23344444444444333
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.81 E-value=2.8e-09 Score=78.84 Aligned_cols=61 Identities=39% Similarity=0.452 Sum_probs=56.5
Q ss_pred cCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcc
Q 040109 418 VGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNF 478 (598)
Q Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 478 (598)
++|++|++++|+++...+..|..+++|++|++++|+++...|+.|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999977678999999999999999999988788999999999999999985
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.77 E-value=6.6e-10 Score=116.54 Aligned_cols=130 Identities=34% Similarity=0.396 Sum_probs=73.5
Q ss_pred CCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCC
Q 040109 110 KLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLR 189 (598)
Q Consensus 110 ~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~ 189 (598)
.+..++.+.+..|.+.. +-..+..+++|..|++.+|.|.. +...+..+++|++|++++|.|. ....+..++.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~---~i~~l~~l~~L~ 143 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT---KLEGLSTLTLLK 143 (414)
T ss_pred HhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccc---cccchhhccchh
Confidence 45555666666666653 23345666777777777777763 2222556677777777777662 223345555577
Q ss_pred EEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCC
Q 040109 190 YLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLT 252 (598)
Q Consensus 190 ~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 252 (598)
.|++++|.++.+. .+..+++|+.+++++|++...... . .....+++.+++.+|.+.
T Consensus 144 ~L~l~~N~i~~~~----~~~~l~~L~~l~l~~n~i~~ie~~--~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 144 ELNLSGNLISDIS----GLESLKSLKLLDLSYNRIVDIEND--E-LSELISLEELDLGGNSIR 199 (414)
T ss_pred hheeccCcchhcc----CCccchhhhcccCCcchhhhhhhh--h-hhhccchHHHhccCCchh
Confidence 7777777666652 344466666666666666554331 0 111255555555555554
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.77 E-value=1.4e-09 Score=114.00 Aligned_cols=234 Identities=29% Similarity=0.289 Sum_probs=161.9
Q ss_pred cCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCccccc
Q 040109 104 INPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLS 183 (598)
Q Consensus 104 l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~ 183 (598)
+-..+..+++|+.|++..|.+.. +...+..+++|++|++++|.|+... .+..++.|+.|++++|.+ .....+.
T Consensus 87 ~~~~l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i---~~~~~~~ 159 (414)
T KOG0531|consen 87 ILNHLSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLI---SDISGLE 159 (414)
T ss_pred hhcccccccceeeeeccccchhh--cccchhhhhcchheecccccccccc--chhhccchhhheeccCcc---hhccCCc
Confidence 33457889999999999999985 4444788999999999999998543 367788899999999998 3344566
Q ss_pred CCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcC
Q 040109 184 YLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVS 263 (598)
Q Consensus 184 ~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~ 263 (598)
.+++|+.+++++|.+..++.. . ...+.+++.+++.+|.+..... .... ..+..+++..|.++..-+-......
T Consensus 160 ~l~~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i~~i~~--~~~~---~~l~~~~l~~n~i~~~~~l~~~~~~ 232 (414)
T KOG0531|consen 160 SLKSLKLLDLSYNRIVDIEND-E-LSELISLEELDLGGNSIREIEG--LDLL---KKLVLLSLLDNKISKLEGLNELVML 232 (414)
T ss_pred cchhhhcccCCcchhhhhhhh-h-hhhccchHHHhccCCchhcccc--hHHH---HHHHHhhcccccceeccCcccchhH
Confidence 799999999999999986321 1 5789999999999999887654 2222 4555668888877642211111111
Q ss_pred ccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCC
Q 040109 264 SNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNS 343 (598)
Q Consensus 264 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~ 343 (598)
. |+.+++++|.+.. ++..+..+.++..|++.+|++..+.. +...+.+..+....|.+...... ... .+....+
T Consensus 233 ~--L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~ 305 (414)
T KOG0531|consen 233 H--LRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLEG-LERLPKLSELWLNDNKLALSEAI-SQE--YITSAAP 305 (414)
T ss_pred H--HHHHhcccCcccc-ccccccccccccccchhhcccccccc-ccccchHHHhccCcchhcchhhh-hcc--ccccccc
Confidence 2 6788888888873 33556677888889999888876432 44456667777777766532111 000 0111223
Q ss_pred CCCEEEccCcccccc
Q 040109 344 SLEWLYLASNEITGT 358 (598)
Q Consensus 344 ~L~~L~Ls~N~l~~~ 358 (598)
+++.+.+..|.....
T Consensus 306 ~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 306 TLVTLTLELNPIRKI 320 (414)
T ss_pred cccccccccCccccc
Confidence 677777887776643
No 43
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.69 E-value=2.5e-08 Score=67.48 Aligned_cols=41 Identities=46% Similarity=0.998 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhcCC-CCCCCCCCCCCCCCCCCCCCccCeeeC
Q 040109 37 DEEKEALLAFKQGLI-DESGILSSWGREDEKRNCCKWRGVRCS 78 (598)
Q Consensus 37 ~~~~~~l~~~k~~~~-~~~~~l~~W~~~~~~~~~c~w~gv~C~ 78 (598)
++|++||++||+++. +|.+.+.+|+... ..+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~-~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSS-DSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT---S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcC-CCCCeeeccEEeC
Confidence 689999999999999 5678999998411 2799999999995
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=2.8e-09 Score=100.07 Aligned_cols=185 Identities=21% Similarity=0.186 Sum_probs=112.9
Q ss_pred CCCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCC
Q 040109 161 SRLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKS 240 (598)
Q Consensus 161 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 240 (598)
+.||+|||+...+........+..+.+|+.|.+.++++.+- +...+.+..+|+.|+++.+.--..... -..+..++.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~--I~~~iAkN~~L~~lnlsm~sG~t~n~~-~ll~~scs~ 261 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDP--IVNTIAKNSNLVRLNLSMCSGFTENAL-QLLLSSCSR 261 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcH--HHHHHhccccceeeccccccccchhHH-HHHHHhhhh
Confidence 35777888777663333334466777888888888877763 667777788888888877643221111 112223377
Q ss_pred ccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccc---cccchhhcCCCCccEEeeccCCC-CC-cchhhcCCCCCc
Q 040109 241 LEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLH---GSIPVAFGHMASLRYLGLLSNRL-RE-VPKFLGNMSSLK 315 (598)
Q Consensus 241 L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~Ls~n~l-~~-lp~~l~~l~~L~ 315 (598)
|..|+++++.+.......+-.--...++.|+++++.-. ..+..-...+++|.+|||++|.. +. .-..+..++.|+
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 88888888877654332222211122777777776321 12222335778888888888653 33 445677788888
Q ss_pred EEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCcc
Q 040109 316 MLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNE 354 (598)
Q Consensus 316 ~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~ 354 (598)
+|.++.|. +++|+.+-.+. ..|+|.+||..++-
T Consensus 342 ~lSlsRCY--~i~p~~~~~l~----s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 342 HLSLSRCY--DIIPETLLELN----SKPSLVYLDVFGCV 374 (419)
T ss_pred eeehhhhc--CCChHHeeeec----cCcceEEEEecccc
Confidence 88888774 46666554433 23478888876653
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=1.8e-08 Score=94.69 Aligned_cols=88 Identities=27% Similarity=0.287 Sum_probs=59.9
Q ss_pred CCCEEEccCCCCCCCCCcccc-cCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCC
Q 040109 162 RLQVLDLRFNNLFSSGNLDWL-SYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKS 240 (598)
Q Consensus 162 ~L~~L~Ls~n~l~~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 240 (598)
.++.|.+.++.+-..+....| ...+.++.+||.+|.|++..++...+.++|.|+.|+++.|.+...+.... ... .+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~p~-~n 122 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--LPL-KN 122 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--ccc-cc
Confidence 455566666665333333333 34567889999999999887788888899999999999998876654221 111 66
Q ss_pred ccEEEccCCCCC
Q 040109 241 LEVIDLSNNYLT 252 (598)
Q Consensus 241 L~~L~Ls~n~l~ 252 (598)
|++|-|.+..+.
T Consensus 123 l~~lVLNgT~L~ 134 (418)
T KOG2982|consen 123 LRVLVLNGTGLS 134 (418)
T ss_pred eEEEEEcCCCCC
Confidence 777777766554
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.53 E-value=3.6e-09 Score=110.32 Aligned_cols=110 Identities=27% Similarity=0.273 Sum_probs=85.2
Q ss_pred cccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCC
Q 040109 390 KSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLS 469 (598)
Q Consensus 390 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 469 (598)
+.-++.|+.|||++|+++. .. .+..++.|++|||++|.+. .+|.--..-..|..|.+++|.++.. ..+.++.+|+
T Consensus 183 Lqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL--~gie~LksL~ 257 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL--RGIENLKSLY 257 (1096)
T ss_pred HHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhh--hhHHhhhhhh
Confidence 3457789999999999983 33 8889999999999999998 6665322223499999999998633 4678999999
Q ss_pred EEeCCCCcceecCC--CCCccCccCCCccCCCCCCCC
Q 040109 470 VMDLSYNNFSGKIP--KGTQLQRFGASTYAGNPELCG 504 (598)
Q Consensus 470 ~L~ls~N~l~~~~p--~~~~~~~l~~~~~~gnp~lC~ 504 (598)
.||+++|-+.+.-. ....+..+..+.++|||.-|.
T Consensus 258 ~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 258 GLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred ccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 99999998875322 224566777888999999884
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=4.9e-09 Score=98.49 Aligned_cols=180 Identities=22% Similarity=0.204 Sum_probs=109.7
Q ss_pred CCCEEECCCCCCCC-CCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCc-CCCCCchhHhhcCCCCCc
Q 040109 138 KLSELALSSAQLAG-PIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCK-LSKFSNWFQVLSNLRSLT 215 (598)
Q Consensus 138 ~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~l~~l~~L~ 215 (598)
.|++|||++..|+. .+-..+..|.+|+.|.+.++++ .......+..-.+|+.|+++.+. ++.. ..--.+.+++.|.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~L-dD~I~~~iAkN~~L~~lnlsm~sG~t~n-~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRL-DDPIVNTIAKNSNLVRLNLSMCSGFTEN-ALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhcccccccc-CcHHHHHHhccccceeeccccccccchh-HHHHHHHhhhhHh
Confidence 46777777666652 2223345666777777777765 33333446666677777777653 3322 2234566777888
Q ss_pred EEeccCcCCCCCCCChhhhccccCCccEEEccCCCC---CCCcchhhhhcCccCccEEEccCCc-cccccchhhcCCCCc
Q 040109 216 TLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYL---TNSIYPWLLNVSSNLVDHIDLGSNR-LHGSIPVAFGHMASL 291 (598)
Q Consensus 216 ~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l---~~~~~~~l~~~~~~~L~~L~L~~n~-l~~~~p~~l~~l~~L 291 (598)
.|++++|.+...... .......++|+.|+++++.- ...+..-...+++ +.+|||++|. ++......|..++.|
T Consensus 264 ~LNlsWc~l~~~~Vt-v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~--l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVT-VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPN--LVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred hcCchHhhccchhhh-HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCc--eeeeccccccccCchHHHHHHhcchh
Confidence 888888876554322 22222236788888877531 1233333445666 8888888774 444444566778889
Q ss_pred cEEeeccCCCCCcch---hhcCCCCCcEEEcccCc
Q 040109 292 RYLGLLSNRLREVPK---FLGNMSSLKMLVLSYNE 323 (598)
Q Consensus 292 ~~L~Ls~n~l~~lp~---~l~~l~~L~~L~Ls~n~ 323 (598)
++|.++.|-.- +|. .+...|.|.+|++-++-
T Consensus 341 ~~lSlsRCY~i-~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 341 QHLSLSRCYDI-IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeeehhhhcCC-ChHHeeeeccCcceEEEEecccc
Confidence 99988887532 222 46677889999988764
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.38 E-value=8.4e-08 Score=89.16 Aligned_cols=228 Identities=21% Similarity=0.108 Sum_probs=121.2
Q ss_pred ccCCCCCCEEECcCCCCCCCC---cchhcCCCCCCCEEECCCCCC---CCCCc-------cccCCCCCCCEEEccCCCCC
Q 040109 108 LLKLQHLTYLDLSWNNFSGSP---IPEFIGSLSKLSELALSSAQL---AGPIP-------HQLGNLSRLQVLDLRFNNLF 174 (598)
Q Consensus 108 l~~l~~L~~L~Ls~n~l~~~~---~p~~l~~l~~L~~L~Ls~n~l---~~~~p-------~~l~~l~~L~~L~Ls~n~l~ 174 (598)
+..+..++.+|||+|.|.... +...+.+-.+|+..+++.--. ...++ ..+-+|++|+..+||.|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 344677888888888876531 223344556777777765321 12222 34567888888888888773
Q ss_pred CCCCc---ccccCCCCCCEEEcCCCcCCCCCc--hhH---------hhcCCCCCcEEeccCcCCCCCCCChhh-hccccC
Q 040109 175 SSGNL---DWLSYLSSLRYLDLGDCKLSKFSN--WFQ---------VLSNLRSLTTLYLGHCDLPPISTPSLL-HLNYSK 239 (598)
Q Consensus 175 ~~~~~---~~l~~l~~L~~L~L~~n~l~~~~~--~~~---------~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~~~ 239 (598)
...+. +.++.-+.|++|.+++|.+..+.. +.. ....-|.|+.+....|++..-+..... .+....
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 33222 246666777777777776654311 111 122335555555555555433221111 111113
Q ss_pred CccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCC-----cchhhcCCCCC
Q 040109 240 SLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLRE-----VPKFLGNMSSL 314 (598)
Q Consensus 240 ~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L 314 (598)
.|+++.+..|.|.. ..+.. .+--.+..+++|+.||+.+|-++. +...+...+.|
T Consensus 186 ~lk~vki~qNgIrp---egv~~------------------L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 186 NLKEVKIQQNGIRP---EGVTM------------------LAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred CceeEEeeecCcCc---chhHH------------------HHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 44445554444431 11100 011123455677777777777664 33456666778
Q ss_pred cEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccc
Q 040109 315 KMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITG 357 (598)
Q Consensus 315 ~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~ 357 (598)
+.|.+..|-++......+-..- .....++|..|...+|...+
T Consensus 245 rEL~lnDClls~~G~~~v~~~f-~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 245 RELRLNDCLLSNEGVKSVLRRF-NEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred hhccccchhhccccHHHHHHHh-hhhcCCCccccccchhhhcC
Confidence 8888888877654433322110 01123577888888877664
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.31 E-value=4.1e-08 Score=102.65 Aligned_cols=102 Identities=26% Similarity=0.312 Sum_probs=59.6
Q ss_pred CccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcchh-hcCCCCCcEEE
Q 040109 240 SLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKF-LGNMSSLKMLV 318 (598)
Q Consensus 240 ~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~ 318 (598)
.|...+.++|.+. .....+.-++. ++.|+|++|+++.. +.+..++.|++|||++|.+..+|.. ..++ +|+.|.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~a--le~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPA--LESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHH--hhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhh-hheeee
Confidence 4555566666655 33444555555 66777777776633 2566667777777777777666642 2223 367777
Q ss_pred cccCcCccchhhhhhhcCCCCCCCCCCCEEEccCcccc
Q 040109 319 LSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEIT 356 (598)
Q Consensus 319 Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~ 356 (598)
+++|.++.. ..+.++. +|+.||+++|-+.
T Consensus 239 lrnN~l~tL--~gie~Lk-------sL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 239 LRNNALTTL--RGIENLK-------SLYGLDLSYNLLS 267 (1096)
T ss_pred ecccHHHhh--hhHHhhh-------hhhccchhHhhhh
Confidence 777766532 2234444 6666666666655
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.30 E-value=5.2e-08 Score=81.28 Aligned_cols=88 Identities=26% Similarity=0.324 Sum_probs=52.5
Q ss_pred ccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEe
Q 040109 393 LGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMD 472 (598)
Q Consensus 393 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 472 (598)
++.++.|+|++|.|+ .+|..+..++.|+.|+++.|.+. ..|..+..+.+|..||..+|.+. .+|-.+---+.....+
T Consensus 76 f~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~ 152 (177)
T KOG4579|consen 76 FPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIK 152 (177)
T ss_pred cchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHH
Confidence 334566666667666 67777777777777777777777 55666666777777777777665 4443322112222234
Q ss_pred CCCCcceecCC
Q 040109 473 LSYNNFSGKIP 483 (598)
Q Consensus 473 ls~N~l~~~~p 483 (598)
+.++++.+..|
T Consensus 153 lgnepl~~~~~ 163 (177)
T KOG4579|consen 153 LGNEPLGDETK 163 (177)
T ss_pred hcCCcccccCc
Confidence 45555544443
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=3.1e-07 Score=86.54 Aligned_cols=212 Identities=21% Similarity=0.168 Sum_probs=107.9
Q ss_pred CCCCCCEEECcCCCCCCCCcchhcC-CCCCCCEEECCCCCCCC--CCccccCCCCCCCEEEccCCCCCCCCCcccc-cCC
Q 040109 110 KLQHLTYLDLSWNNFSGSPIPEFIG-SLSKLSELALSSAQLAG--PIPHQLGNLSRLQVLDLRFNNLFSSGNLDWL-SYL 185 (598)
Q Consensus 110 ~l~~L~~L~Ls~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l-~~l 185 (598)
..+.++.|.+.++.|.....-..|+ ..++++++||.+|.|+. .+...+.++|.|++|+++.|.+. ..+..+ ...
T Consensus 43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~--s~I~~lp~p~ 120 (418)
T KOG2982|consen 43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS--SDIKSLPLPL 120 (418)
T ss_pred cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC--CccccCcccc
Confidence 3344455555555554332222232 34667777777777762 33344567777777777777762 222223 345
Q ss_pred CCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCC--CcchhhhhcC
Q 040109 186 SSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTN--SIYPWLLNVS 263 (598)
Q Consensus 186 ~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~l~~~~ 263 (598)
.+|++|-|.+..+.-. ..-..+..+|.+++|+++.|.........-..-...+.+++|..-.|.... .+-.--.-++
T Consensus 121 ~nl~~lVLNgT~L~w~-~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fp 199 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLSWT-QSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFP 199 (418)
T ss_pred cceEEEEEcCCCCChh-hhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcc
Confidence 6777777777655421 122456667777777777774332211100000011334444433332110 0000001123
Q ss_pred ccCccEEEccCCccccc-cchhhcCCCCccEEeeccCCCCCc--chhhcCCCCCcEEEcccCcCcc
Q 040109 264 SNLVDHIDLGSNRLHGS-IPVAFGHMASLRYLGLLSNRLREV--PKFLGNMSSLKMLVLSYNELRG 326 (598)
Q Consensus 264 ~~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~l--p~~l~~l~~L~~L~Ls~n~l~~ 326 (598)
+ +..+.+..|.+... ....+..++.+..|+|+.|++.+. -+.+.+++.|..|.++++++..
T Consensus 200 n--v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 200 N--VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred c--chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 3 55566666655432 122344456666777777777762 2456777777777777777654
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.13 E-value=7e-06 Score=83.18 Aligned_cols=75 Identities=19% Similarity=0.264 Sum_probs=48.2
Q ss_pred hhhcCccCccEEEccCCccccccchhhcCCCCccEEeecc-CCCCCcchhhcCCCCCcEEEcccC-cCccchhhhhhhcC
Q 040109 259 LLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLS-NRLREVPKFLGNMSSLKMLVLSYN-ELRGELSEFIQNVS 336 (598)
Q Consensus 259 l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~lp~~l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~ 336 (598)
+..+.. ++.|++++|.++ .+|. -..+|++|.+++ +.++.+|..+ .++|+.|++++| .+. .+|.
T Consensus 48 ~~~~~~--l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------ 112 (426)
T PRK15386 48 IEEARA--SGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------ 112 (426)
T ss_pred HHHhcC--CCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------
Confidence 444555 888888888776 4452 234688888877 4555577654 257888888887 333 2221
Q ss_pred CCCCCCCCCCEEEccCccc
Q 040109 337 SGSTKNSSLEWLYLASNEI 355 (598)
Q Consensus 337 ~g~~~~~~L~~L~Ls~N~l 355 (598)
+|+.|+++.+..
T Consensus 113 -------sLe~L~L~~n~~ 124 (426)
T PRK15386 113 -------SVRSLEIKGSAT 124 (426)
T ss_pred -------ccceEEeCCCCC
Confidence 677777776554
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.11 E-value=1.1e-06 Score=81.83 Aligned_cols=236 Identities=18% Similarity=0.182 Sum_probs=147.7
Q ss_pred CcEEEEEcCCCCCCCCCCCce----ecCccccCCCCCCEEECcCCCCCC--CCcc-------hhcCCCCCCCEEECCCCC
Q 040109 82 GHVLGLDLRALSDSPVDALKG----TINPSLLKLQHLTYLDLSWNNFSG--SPIP-------EFIGSLSKLSELALSSAQ 148 (598)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~l~g----~l~~~l~~l~~L~~L~Ls~n~l~~--~~~p-------~~l~~l~~L~~L~Ls~n~ 148 (598)
..++.+||+| |.+.. .+...+.+-++|+..+++.-.... ..++ ..+..+++|+..+||.|.
T Consensus 30 d~~~evdLSG------NtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 30 DELVEVDLSG------NTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred cceeEEeccC------CcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 3578889988 55543 334456677888888887632211 1133 334578999999999998
Q ss_pred CCCCCccc----cCCCCCCCEEEccCCCCCCCCCc------------ccccCCCCCCEEEcCCCcCCCCCc--hhHhhcC
Q 040109 149 LAGPIPHQ----LGNLSRLQVLDLRFNNLFSSGNL------------DWLSYLSSLRYLDLGDCKLSKFSN--WFQVLSN 210 (598)
Q Consensus 149 l~~~~p~~----l~~l~~L~~L~Ls~n~l~~~~~~------------~~l~~l~~L~~L~L~~n~l~~~~~--~~~~l~~ 210 (598)
+....|+. ++.-+.|.+|.+++|.+-..... ....+-|.|++.....|++...+. +...+..
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s 183 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES 183 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh
Confidence 88666654 45668899999999976221110 123456899999999999886533 2334555
Q ss_pred CCCCcEEeccCcCCCCCC--CChhhhccccCCccEEEccCCCCCCCcchh----hhhcCccCccEEEccCCccccccchh
Q 040109 211 LRSLTTLYLGHCDLPPIS--TPSLLHLNYSKSLEVIDLSNNYLTNSIYPW----LLNVSSNLVDHIDLGSNRLHGSIPVA 284 (598)
Q Consensus 211 l~~L~~L~l~~n~l~~~~--~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~----l~~~~~~~L~~L~L~~n~l~~~~p~~ 284 (598)
-.+|+.+.+..|.|.... .-.+..+..+.+|++||+.+|.++...... +..++. |+.|.+.+|-++..-..+
T Consensus 184 h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~--lrEL~lnDClls~~G~~~ 261 (388)
T COG5238 184 HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL--LRELRLNDCLLSNEGVKS 261 (388)
T ss_pred hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch--hhhccccchhhccccHHH
Confidence 579999999999887542 222333344589999999999988543332 333444 777888887776433322
Q ss_pred h------cCCCCccEEeeccCCCCC--c-----chh-hcCCCCCcEEEcccCcCc
Q 040109 285 F------GHMASLRYLGLLSNRLRE--V-----PKF-LGNMSSLKMLVLSYNELR 325 (598)
Q Consensus 285 l------~~l~~L~~L~Ls~n~l~~--l-----p~~-l~~l~~L~~L~Ls~n~l~ 325 (598)
+ ...++|..|-..+|...+ + |.. -..+|-|..|.+.+|++.
T Consensus 262 v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 262 VLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred HHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 2 124566666666666543 1 110 123455555556666554
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.04 E-value=3.6e-07 Score=76.35 Aligned_cols=59 Identities=25% Similarity=0.390 Sum_probs=29.4
Q ss_pred ccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCcc
Q 040109 267 VDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRG 326 (598)
Q Consensus 267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~ 326 (598)
++.|++++|.++ .+|..+..++.|+.|+++.|.+...|..+..+.++..|+..+|.+..
T Consensus 79 ~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 79 ATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAE 137 (177)
T ss_pred hhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCcccc
Confidence 444444444444 34444555555555555555555555444445555555555554443
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=9.7e-06 Score=54.86 Aligned_cols=37 Identities=32% Similarity=0.492 Sum_probs=22.6
Q ss_pred CccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCcc
Q 040109 290 SLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRG 326 (598)
Q Consensus 290 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~ 326 (598)
+|++|++++|+++++|..+.++++|+.|++++|+++.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 5666666666666666556666666666666666653
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.91 E-value=9.9e-06 Score=54.83 Aligned_cols=36 Identities=39% Similarity=0.639 Sum_probs=17.5
Q ss_pred ccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCc
Q 040109 395 LIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLT 431 (598)
Q Consensus 395 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 431 (598)
+|++|++++|+|+ .+|..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3455555555555 34444555555555555555554
No 57
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.89 E-value=7.9e-07 Score=87.79 Aligned_cols=37 Identities=14% Similarity=0.190 Sum_probs=20.7
Q ss_pred ccccceEeccCCc-CCCcCchhhhcccCCcEEECcCCc
Q 040109 393 LGLIKIIDLSSNK-LGGEVPEEIMDLVGLVALNLSNNN 429 (598)
Q Consensus 393 l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~N~ 429 (598)
+..|..+.|+++. ++...-+.+..+++|+.+++-+++
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 3345555555553 554555555666666666666654
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.89 E-value=1.5e-05 Score=71.47 Aligned_cols=108 Identities=28% Similarity=0.323 Sum_probs=75.7
Q ss_pred CCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCCE
Q 040109 111 LQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRY 190 (598)
Q Consensus 111 l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~ 190 (598)
+.+...+||+.|.+... +.|..+++|.+|.|++|+|+.+-|.--..+++|+.|.|.+|.+...+....+..+++|++
T Consensus 41 ~d~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchhhc---ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 34667888998888642 457778889999999999886666544566788888888888877677777778888888
Q ss_pred EEcCCCcCCCCCch-hHhhcCCCCCcEEeccC
Q 040109 191 LDLGDCKLSKFSNW-FQVLSNLRSLTTLYLGH 221 (598)
Q Consensus 191 L~L~~n~l~~~~~~-~~~l~~l~~L~~L~l~~ 221 (598)
|.+-+|..+....- .-.+..+|+|+.||...
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 88888877654220 02344555555555543
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.81 E-value=7.6e-05 Score=75.82 Aligned_cols=77 Identities=16% Similarity=0.321 Sum_probs=46.3
Q ss_pred hhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEEccCC-ccccccchhh
Q 040109 207 VLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSN-RLHGSIPVAF 285 (598)
Q Consensus 207 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n-~l~~~~p~~l 285 (598)
.+..+.+++.|++++|.++..+. .+++|+.|.++++.--..+|..+. .. |++|++++| .+. .+|
T Consensus 47 r~~~~~~l~~L~Is~c~L~sLP~-------LP~sLtsL~Lsnc~nLtsLP~~LP--~n--Le~L~Ls~Cs~L~-sLP--- 111 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIESLPV-------LPNELTEITIENCNNLTTLPGSIP--EG--LEKLTVCHCPEIS-GLP--- 111 (426)
T ss_pred HHHHhcCCCEEEeCCCCCcccCC-------CCCCCcEEEccCCCCcccCCchhh--hh--hhheEccCccccc-ccc---
Confidence 35556888889999887777642 226788888877443334444332 23 777777776 333 333
Q ss_pred cCCCCccEEeeccCCC
Q 040109 286 GHMASLRYLGLLSNRL 301 (598)
Q Consensus 286 ~~l~~L~~L~Ls~n~l 301 (598)
.+|+.|+++.+..
T Consensus 112 ---~sLe~L~L~~n~~ 124 (426)
T PRK15386 112 ---ESVRSLEIKGSAT 124 (426)
T ss_pred ---cccceEEeCCCCC
Confidence 3456666665543
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.75 E-value=5.5e-05 Score=67.92 Aligned_cols=130 Identities=22% Similarity=0.230 Sum_probs=86.6
Q ss_pred CCEEECcCCCCCCCCcchhcC-CCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCCEEE
Q 040109 114 LTYLDLSWNNFSGSPIPEFIG-SLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRYLD 192 (598)
Q Consensus 114 L~~L~Ls~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~ 192 (598)
=+.++|.+..+... ..++ -+.+...+||++|.+.. -+.|..+++|.+|.+++|+| ....+.--..+++|+.|.
T Consensus 21 e~e~~LR~lkip~i---enlg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrI-t~I~p~L~~~~p~l~~L~ 94 (233)
T KOG1644|consen 21 ERELDLRGLKIPVI---ENLGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRI-TRIDPDLDTFLPNLKTLI 94 (233)
T ss_pred ccccccccccccch---hhccccccccceecccccchhh--cccCCCccccceEEecCCcc-eeeccchhhhccccceEE
Confidence 35556665554321 1122 23567789999998862 24577889999999999998 334444445567899999
Q ss_pred cCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCC
Q 040109 193 LGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNY 250 (598)
Q Consensus 193 L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~ 250 (598)
|.+|.+..+.++ ..+..+|+|++|.+-+|+++.....-.......++|+.||.+.-.
T Consensus 95 LtnNsi~~l~dl-~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 95 LTNNSIQELGDL-DPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCcchhhhhhc-chhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 999988876443 567788899999998888876544322222233778888776543
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.71 E-value=1.5e-05 Score=87.58 Aligned_cols=114 Identities=25% Similarity=0.240 Sum_probs=58.1
Q ss_pred CCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCC
Q 040109 110 KLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLR 189 (598)
Q Consensus 110 ~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~ 189 (598)
.||.|+.|.+++-.+.....-....++++|..||+|+++++.. ..++++++|++|.+.+=.+........+.++++|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 3566666666665554322333444566666666666666532 44556666666666555443333334455566666
Q ss_pred EEEcCCCcCCCCCchh----HhhcCCCCCcEEeccCcCCC
Q 040109 190 YLDLGDCKLSKFSNWF----QVLSNLRSLTTLYLGHCDLP 225 (598)
Q Consensus 190 ~L~L~~n~l~~~~~~~----~~l~~l~~L~~L~l~~n~l~ 225 (598)
.||+|..+....+.+. +.-..+|+|+.||.+++.+.
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 6666655444332111 11223455555555544443
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.62 E-value=2.7e-05 Score=72.90 Aligned_cols=113 Identities=24% Similarity=0.264 Sum_probs=68.6
Q ss_pred cCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCC--CCCCCCccccCCCCCCCEEEccCCCCCCCCCccc
Q 040109 104 INPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSA--QLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDW 181 (598)
Q Consensus 104 l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 181 (598)
+....-.+..|+.|++.+..++.. ..+..|++|++|.++.| ++.+.++.-...+++|++|++++|++........
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP 111 (260)
T ss_pred cccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch
Confidence 333344556666777776666532 34556788888888888 6665555555666888888888888743333444
Q ss_pred ccCCCCCCEEEcCCCcCCCCCch-hHhhcCCCCCcEEec
Q 040109 182 LSYLSSLRYLDLGDCKLSKFSNW-FQVLSNLRSLTTLYL 219 (598)
Q Consensus 182 l~~l~~L~~L~L~~n~l~~~~~~-~~~l~~l~~L~~L~l 219 (598)
+..+.+|..|++.+|..+...+- -..|.-+++|++|+-
T Consensus 112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 56666677777777765543211 123444555555543
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.58 E-value=3.1e-05 Score=85.19 Aligned_cols=41 Identities=20% Similarity=0.312 Sum_probs=18.1
Q ss_pred CCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCC
Q 040109 185 LSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPP 226 (598)
Q Consensus 185 l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 226 (598)
+|.|+.|.+++-.+... ++.....++|+|..||+++++++.
T Consensus 147 LPsL~sL~i~~~~~~~~-dF~~lc~sFpNL~sLDIS~TnI~n 187 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDND-DFSQLCASFPNLRSLDISGTNISN 187 (699)
T ss_pred CcccceEEecCceecch-hHHHHhhccCccceeecCCCCccC
Confidence 44455555444433321 123334444555555555544443
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.29 E-value=0.00012 Score=68.63 Aligned_cols=115 Identities=22% Similarity=0.277 Sum_probs=72.0
Q ss_pred cchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcc-cccCCCCCCEEEcCCCcCCCCCchhHh
Q 040109 129 IPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLD-WLSYLSSLRYLDLGDCKLSKFSNWFQV 207 (598)
Q Consensus 129 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~ 207 (598)
+..-...+..|+.|.+.+..++.. ..|-.+++|++|.++.|......... -...+++|+++++++|++..+.. ...
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lst-l~p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLST-LRP 111 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccc-cch
Confidence 333344566777777777776622 34567889999999999432222222 24556899999999998876533 245
Q ss_pred hcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEc
Q 040109 208 LSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDL 246 (598)
Q Consensus 208 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~L 246 (598)
+..+.+|..|++.+|..+.....--..+..+++|++|+-
T Consensus 112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 667777888888888777644432223333356665543
No 65
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.11 E-value=4.6e-05 Score=75.60 Aligned_cols=88 Identities=20% Similarity=0.145 Sum_probs=51.2
Q ss_pred cccccceEeccCCcCC--CcCchhhhcccCCcEEECcCCcCcccC-----CcccCCCCCCCeeeCCCCccC-CCCccccc
Q 040109 392 ILGLIKIIDLSSNKLG--GEVPEEIMDLVGLVALNLSNNNLTGQI-----TPRIGQLKSLDFLDLSINHFF-GGIPSSLS 463 (598)
Q Consensus 392 ~l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~~-----p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~ 463 (598)
+.+.|+.+|+.++... +.+..--.+++.|+.|.++++...... ...-..+..|+.+.|+++... ...-+.+.
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~ 423 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS 423 (483)
T ss_pred CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh
Confidence 3445666666655432 111222235677788888877543211 222345677888888888653 23334567
Q ss_pred CCCCCCEEeCCCCcce
Q 040109 464 RLRLLSVMDLSYNNFS 479 (598)
Q Consensus 464 ~l~~L~~L~ls~N~l~ 479 (598)
.++.|+.+++-+++-.
T Consensus 424 ~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 424 ICRNLERIELIDCQDV 439 (483)
T ss_pred hCcccceeeeechhhh
Confidence 7788888888777543
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=3.8e-05 Score=72.12 Aligned_cols=103 Identities=26% Similarity=0.245 Sum_probs=69.0
Q ss_pred CCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCCE
Q 040109 111 LQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRY 190 (598)
Q Consensus 111 l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~ 190 (598)
+.+.+.|++-++.++++ .....|+.|++|.|+-|+|+..- .+..|++|++|+|..|.|........+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 55677788888888754 34557888888888888887443 36778888888888888755555566777888888
Q ss_pred EEcCCCcCCCCCc---hhHhhcCCCCCcEEe
Q 040109 191 LDLGDCKLSKFSN---WFQVLSNLRSLTTLY 218 (598)
Q Consensus 191 L~L~~n~l~~~~~---~~~~l~~l~~L~~L~ 218 (598)
|.|..|...+-.. -...+..+|+|++||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8887776543211 012344556666554
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.00025 Score=66.83 Aligned_cols=83 Identities=24% Similarity=0.257 Sum_probs=38.4
Q ss_pred CCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcE
Q 040109 137 SKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTT 216 (598)
Q Consensus 137 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~ 216 (598)
.+.+.|+.-++.+..+ ....+++.|++|.|+-|+|. ....+..+++|++|+|..|.|.++.+ ..-+.++++|+.
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs---sL~pl~rCtrLkElYLRkN~I~sldE-L~YLknlpsLr~ 92 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS---SLAPLQRCTRLKELYLRKNCIESLDE-LEYLKNLPSLRT 92 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc---cchhHHHHHHHHHHHHHhcccccHHH-HHHHhcCchhhh
Confidence 3444555555555421 12234555555555555541 12234455555555555555554422 233444455555
Q ss_pred EeccCcCCC
Q 040109 217 LYLGHCDLP 225 (598)
Q Consensus 217 L~l~~n~l~ 225 (598)
|.|..|.-.
T Consensus 93 LWL~ENPCc 101 (388)
T KOG2123|consen 93 LWLDENPCC 101 (388)
T ss_pred HhhccCCcc
Confidence 555444433
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.24 E-value=0.011 Score=50.71 Aligned_cols=13 Identities=31% Similarity=0.508 Sum_probs=4.8
Q ss_pred hhcCCCCCcEEec
Q 040109 207 VLSNLRSLTTLYL 219 (598)
Q Consensus 207 ~l~~l~~L~~L~l 219 (598)
.+.++++++.+.+
T Consensus 53 ~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 53 AFSNCKSLESITF 65 (129)
T ss_dssp TTTT-TT-EEEEE
T ss_pred eeecccccccccc
Confidence 3444444444444
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.98 E-value=0.021 Score=48.90 Aligned_cols=60 Identities=25% Similarity=0.355 Sum_probs=25.1
Q ss_pred ccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccC
Q 040109 182 LSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSN 248 (598)
Q Consensus 182 l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~ 248 (598)
|.++++|+.+.+.. .+..++. ..|..+++|+.+.+..+ +.......+... ++++.+.+.+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~--~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~---~~l~~i~~~~ 67 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGE--NAFSNCTSLKSINFPNN-LTSIGDNAFSNC---KSLESITFPN 67 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-T--TTTTT-TT-SEEEESST-TSCE-TTTTTT----TT-EEEEETS
T ss_pred HhCCCCCCEEEECC-CeeEeCh--hhccccccccccccccc-ccccceeeeecc---cccccccccc
Confidence 55555566666553 3444322 45666666666666553 444333223222 4566666643
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.62 E-value=0.0023 Score=68.72 Aligned_cols=113 Identities=27% Similarity=0.269 Sum_probs=48.5
Q ss_pred CCCCCEEECcCCC-CCCCCcchhcCCCCCCCEEECCCC-CCCCCCc----cccCCCCCCCEEEccCCCCCCCCCcccc-c
Q 040109 111 LQHLTYLDLSWNN-FSGSPIPEFIGSLSKLSELALSSA-QLAGPIP----HQLGNLSRLQVLDLRFNNLFSSGNLDWL-S 183 (598)
Q Consensus 111 l~~L~~L~Ls~n~-l~~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p----~~l~~l~~L~~L~Ls~n~l~~~~~~~~l-~ 183 (598)
.+.|+.|.+.++. +....+-.....+++|+.|+++++ ......+ .....+.+|+.|+++++...+......+ .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 4555555555542 221112233444566666666552 1111111 1223445556666655552122222222 2
Q ss_pred CCCCCCEEEcCCCc-CCCCCchhHhhcCCCCCcEEeccCcCC
Q 040109 184 YLSSLRYLDLGDCK-LSKFSNWFQVLSNLRSLTTLYLGHCDL 224 (598)
Q Consensus 184 ~l~~L~~L~L~~n~-l~~~~~~~~~l~~l~~L~~L~l~~n~l 224 (598)
.+++|++|.+.++. +++. .+......+++|++|++++|..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~-gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDE-GLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchh-HHHHHHHhcCcccEEeeecCcc
Confidence 25555555555544 3321 2333344455555555555544
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.45 E-value=0.0038 Score=67.07 Aligned_cols=117 Identities=27% Similarity=0.196 Sum_probs=77.6
Q ss_pred ccccCCCCCCEEECcCC-CC-CCC--CcchhcCCCCCCCEEECCCCC-CCCCCccccC-CCCCCCEEEccCCC-CCCCCC
Q 040109 106 PSLLKLQHLTYLDLSWN-NF-SGS--PIPEFIGSLSKLSELALSSAQ-LAGPIPHQLG-NLSRLQVLDLRFNN-LFSSGN 178 (598)
Q Consensus 106 ~~l~~l~~L~~L~Ls~n-~l-~~~--~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~-~l~~L~~L~Ls~n~-l~~~~~ 178 (598)
+.....++|+.|+++++ .. ... ........+++|+.|+++++. ++...-..+. .+++|++|.+.++. +...+.
T Consensus 208 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl 287 (482)
T KOG1947|consen 208 ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGL 287 (482)
T ss_pred HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHH
Confidence 44567899999999973 11 111 012334567899999999998 6544334443 38899999988887 434444
Q ss_pred cccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCc
Q 040109 179 LDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHC 222 (598)
Q Consensus 179 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n 222 (598)
......+++|++|+++++.......+.....++++|+.|.+...
T Consensus 288 ~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 288 VSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred HHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 44567789999999999876543334444566777777655443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.29 E-value=0.0058 Score=34.31 Aligned_cols=18 Identities=50% Similarity=0.599 Sum_probs=7.7
Q ss_pred CcEEECcCCcCcccCCccc
Q 040109 420 LVALNLSNNNLTGQITPRI 438 (598)
Q Consensus 420 L~~L~Ls~N~l~~~~p~~l 438 (598)
|++|+|++|+++ .+|+.|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 344444444444 344333
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.25 E-value=0.0073 Score=33.91 Aligned_cols=18 Identities=33% Similarity=0.689 Sum_probs=8.4
Q ss_pred cceEeccCCcCCCcCchhh
Q 040109 396 IKIIDLSSNKLGGEVPEEI 414 (598)
Q Consensus 396 L~~L~Ls~n~l~~~~p~~l 414 (598)
|++|||++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444555555544 444433
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.46 E-value=0.00044 Score=72.98 Aligned_cols=61 Identities=31% Similarity=0.342 Sum_probs=33.9
Q ss_pred cceEeccCCcCCCc----Cchhhhcc-cCCcEEECcCCcCcccC----CcccCCCCCCCeeeCCCCccCC
Q 040109 396 IKIIDLSSNKLGGE----VPEEIMDL-VGLVALNLSNNNLTGQI----TPRIGQLKSLDFLDLSINHFFG 456 (598)
Q Consensus 396 L~~L~Ls~n~l~~~----~p~~l~~l-~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~Ls~N~l~~ 456 (598)
+..|++..|++.+. ..+.+..+ ..++.++++.|.|++.- ...+...+.++++.++.|.+..
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 44466666666533 12233334 45567777777776432 2344455667777777776643
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.26 E-value=0.00093 Score=70.54 Aligned_cols=87 Identities=31% Similarity=0.301 Sum_probs=53.5
Q ss_pred CCEEECCCCCCCCCCc----cccCCCCCCCEEEccCCCCCCCCCc---ccccCC-CCCCEEEcCCCcCCCC--CchhHhh
Q 040109 139 LSELALSSAQLAGPIP----HQLGNLSRLQVLDLRFNNLFSSGNL---DWLSYL-SSLRYLDLGDCKLSKF--SNWFQVL 208 (598)
Q Consensus 139 L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~Ls~n~l~~~~~~---~~l~~l-~~L~~L~L~~n~l~~~--~~~~~~l 208 (598)
+..|.|.+|.+..... ..+...+.|+.|++++|.+...+.. ..+... ..|++|++..|.++.. ..+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 7788888888874432 3456778888888888887321111 122232 4566777777766643 2234555
Q ss_pred cCCCCCcEEeccCcCCC
Q 040109 209 SNLRSLTTLYLGHCDLP 225 (598)
Q Consensus 209 ~~l~~L~~L~l~~n~l~ 225 (598)
.....++.++++.|.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLI 185 (478)
T ss_pred hcccchhHHHHHhcccc
Confidence 55667777777777664
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.44 E-value=0.058 Score=28.05 Aligned_cols=15 Identities=47% Similarity=0.643 Sum_probs=5.9
Q ss_pred CccEEeeccCCCCCc
Q 040109 290 SLRYLGLLSNRLREV 304 (598)
Q Consensus 290 ~L~~L~Ls~n~l~~l 304 (598)
+|++|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 345555555554443
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.97 E-value=0.0056 Score=56.42 Aligned_cols=85 Identities=21% Similarity=0.187 Sum_probs=68.2
Q ss_pred cccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEE
Q 040109 392 ILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVM 471 (598)
Q Consensus 392 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 471 (598)
.+...+.||++.|++. ..-..|+.++.|..|+++.|++. ..|..++++..+..+++..|..+ ..|.++...+.++++
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 3456788888888876 45556777888888888888887 77888888888888888888876 778888888888888
Q ss_pred eCCCCcce
Q 040109 472 DLSYNNFS 479 (598)
Q Consensus 472 ~ls~N~l~ 479 (598)
++-+|.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 88888764
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.20 E-value=0.042 Score=49.89 Aligned_cols=82 Identities=28% Similarity=0.250 Sum_probs=60.8
Q ss_pred ccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCccc-CCcccC-CCCCCCeeeCCCC-ccCCCCcccccCCCCCCEE
Q 040109 395 LIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQ-ITPRIG-QLKSLDFLDLSIN-HFFGGIPSSLSRLRLLSVM 471 (598)
Q Consensus 395 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~-~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L 471 (598)
.++.+|-++..|..+--+.+.+++.++.|.+.+|.--+. --+.++ -.++|+.|+|++| +||..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 478899999999887778888899999999988864321 111121 3478999999988 5776555677888888888
Q ss_pred eCCCC
Q 040109 472 DLSYN 476 (598)
Q Consensus 472 ~ls~N 476 (598)
.+.+=
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 87754
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.43 E-value=0.03 Score=51.82 Aligned_cols=62 Identities=21% Similarity=0.189 Sum_probs=50.8
Q ss_pred cccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccC
Q 040109 392 ILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFF 455 (598)
Q Consensus 392 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 455 (598)
.++.+..||++.|.+. ..|..+.....++.+++..|..+ ..|.+++..+.++++++..|.+.
T Consensus 63 ~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 63 ILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 3556777888888877 77888888888888888888887 78888888899999998888864
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.25 E-value=0.097 Score=47.58 Aligned_cols=80 Identities=24% Similarity=0.287 Sum_probs=38.1
Q ss_pred CCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCccccc-CCCCCCEEEcCCCc-CCCCCchhHhhcCCCCCcE
Q 040109 139 LSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLS-YLSSLRYLDLGDCK-LSKFSNWFQVLSNLRSLTT 216 (598)
Q Consensus 139 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~-~l~~L~~L~L~~n~-l~~~~~~~~~l~~l~~L~~ 216 (598)
++.+|-++..|..+--+.+.+++.++.|.+.+|.-........++ -.++|+.|++++|. |++. ....+..+++|+.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~--GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG--GLACLLKLKNLRR 180 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh--HHHHHHHhhhhHH
Confidence 445555555555444444555555555555555432222222222 23456666666553 4432 2344555555555
Q ss_pred Eecc
Q 040109 217 LYLG 220 (598)
Q Consensus 217 L~l~ 220 (598)
|.+.
T Consensus 181 L~l~ 184 (221)
T KOG3864|consen 181 LHLY 184 (221)
T ss_pred HHhc
Confidence 5544
No 81
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=86.94 E-value=0.62 Score=58.07 Aligned_cols=36 Identities=31% Similarity=0.165 Sum_probs=20.6
Q ss_pred eCCCCccCCCCcccccCCCCCCEEeCCCCcceecCC
Q 040109 448 DLSINHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIP 483 (598)
Q Consensus 448 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 483 (598)
||++|+|+..-+..|..+++|+.|+|++|++.+.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~ 36 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCG 36 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccc
Confidence 456666654444555666666666666655555444
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.82 E-value=0.58 Score=27.21 Aligned_cols=14 Identities=43% Similarity=0.392 Sum_probs=6.9
Q ss_pred CCCCeeeCCCCccC
Q 040109 442 KSLDFLDLSINHFF 455 (598)
Q Consensus 442 ~~L~~L~Ls~N~l~ 455 (598)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34455555555554
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.82 E-value=0.58 Score=27.21 Aligned_cols=14 Identities=43% Similarity=0.392 Sum_probs=6.9
Q ss_pred CCCCeeeCCCCccC
Q 040109 442 KSLDFLDLSINHFF 455 (598)
Q Consensus 442 ~~L~~L~Ls~N~l~ 455 (598)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34455555555554
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.61 E-value=0.75 Score=26.73 Aligned_cols=14 Identities=50% Similarity=0.641 Sum_probs=7.0
Q ss_pred CCCCEEECCCCCCC
Q 040109 137 SKLSELALSSAQLA 150 (598)
Q Consensus 137 ~~L~~L~Ls~n~l~ 150 (598)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34455555555554
No 85
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.61 E-value=0.75 Score=26.73 Aligned_cols=14 Identities=50% Similarity=0.641 Sum_probs=7.0
Q ss_pred CCCCEEECCCCCCC
Q 040109 137 SKLSELALSSAQLA 150 (598)
Q Consensus 137 ~~L~~L~Ls~n~l~ 150 (598)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34455555555554
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.33 E-value=0.45 Score=27.09 Aligned_cols=20 Identities=30% Similarity=0.305 Sum_probs=9.8
Q ss_pred CCCcEEEcccCcCccchhhh
Q 040109 312 SSLKMLVLSYNELRGELSEF 331 (598)
Q Consensus 312 ~~L~~L~Ls~n~l~~~~~~~ 331 (598)
++|++|+|++|++++.....
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 45666666666655544443
No 87
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=82.37 E-value=0.96 Score=36.17 Aligned_cols=21 Identities=43% Similarity=0.603 Sum_probs=11.7
Q ss_pred CchhHHHHHHHHHHHHHHHHhc
Q 040109 1 MSSKCFLLLQYVSLISVILFQL 22 (598)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (598)
|+|+.|+++ .++|++++|+++
T Consensus 1 MaSK~~llL-~l~LA~lLlisS 21 (95)
T PF07172_consen 1 MASKAFLLL-GLLLAALLLISS 21 (95)
T ss_pred CchhHHHHH-HHHHHHHHHHHh
Confidence 999976654 333334444443
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=80.15 E-value=12 Score=39.02 Aligned_cols=19 Identities=16% Similarity=0.328 Sum_probs=10.1
Q ss_pred CCCCEEECCCCCCCCCCcc
Q 040109 137 SKLSELALSSAQLAGPIPH 155 (598)
Q Consensus 137 ~~L~~L~Ls~n~l~~~~p~ 155 (598)
+.+++++++.|.+....|-
T Consensus 165 pr~r~~dls~npi~dkvpi 183 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPI 183 (553)
T ss_pred chhhhhccCCCcccccCCc
Confidence 3455666666655544443
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=73.58 E-value=2 Score=25.05 Aligned_cols=18 Identities=33% Similarity=0.582 Sum_probs=12.5
Q ss_pred CCccEEeeccCCCCCcch
Q 040109 289 ASLRYLGLLSNRLREVPK 306 (598)
Q Consensus 289 ~~L~~L~Ls~n~l~~lp~ 306 (598)
++|+.|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356777777777777765
No 90
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=73.56 E-value=3.1 Score=24.37 Aligned_cols=16 Identities=38% Similarity=0.555 Sum_probs=8.5
Q ss_pred CCCCEEEcCCCcCCCC
Q 040109 186 SSLRYLDLGDCKLSKF 201 (598)
Q Consensus 186 ~~L~~L~L~~n~l~~~ 201 (598)
++|+.|+++.|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4455555555555543
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=61.75 E-value=6.6 Score=23.32 Aligned_cols=14 Identities=50% Similarity=0.351 Sum_probs=8.5
Q ss_pred CCCCeeeCCCCccC
Q 040109 442 KSLDFLDLSINHFF 455 (598)
Q Consensus 442 ~~L~~L~Ls~N~l~ 455 (598)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666664
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=58.31 E-value=33 Score=35.80 Aligned_cols=212 Identities=19% Similarity=0.021 Sum_probs=100.5
Q ss_pred CCCEEECCCCCCCCCCccccCCC---CCCCEEEccCCCCCCCCCc--ccccCCCCCCEEEcCCCcCCCC--Cch----hH
Q 040109 138 KLSELALSSAQLAGPIPHQLGNL---SRLQVLDLRFNNLFSSGNL--DWLSYLSSLRYLDLGDCKLSKF--SNW----FQ 206 (598)
Q Consensus 138 ~L~~L~Ls~n~l~~~~p~~l~~l---~~L~~L~Ls~n~l~~~~~~--~~l~~l~~L~~L~L~~n~l~~~--~~~----~~ 206 (598)
.+.+++|+.|.....+|..+..+ .-++.++.+...+...... -..+.-++|...+++.|..+.- .+. -.
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~ 294 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKD 294 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCccccccccccccc
Confidence 46777777777776666544322 3466666665544222111 1234455677777766654321 111 12
Q ss_pred hhcCCCCCcEEeccCcCCCCCCCChhhhc-c--ccCCccEEEccCCCCCCCcc-hhhhhcCccCccEEEccCCccccccc
Q 040109 207 VLSNLRSLTTLYLGHCDLPPISTPSLLHL-N--YSKSLEVIDLSNNYLTNSIY-PWLLNVSSNLVDHIDLGSNRLHGSIP 282 (598)
Q Consensus 207 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~-~--~~~~L~~L~Ls~n~l~~~~~-~~l~~~~~~~L~~L~L~~n~l~~~~p 282 (598)
.+..-+++ +|++..+.....-....... . -.+.=-.+++..|...+.-. +.=.+-.. ++.|....|.+.+...
T Consensus 295 ~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R--~q~l~~rdnnldgeg~ 371 (553)
T KOG4242|consen 295 TFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQR--VQVLLQRDNNLDGEGG 371 (553)
T ss_pred ccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhcccccee--eeEeeccccccccccc
Confidence 23333455 66665555433222111000 0 00011133444443332110 00001112 6777777777665543
Q ss_pred hhh--cCCCCccEEeeccCCCCC--cchhh--------cCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEc
Q 040109 283 VAF--GHMASLRYLGLLSNRLRE--VPKFL--------GNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYL 350 (598)
Q Consensus 283 ~~l--~~l~~L~~L~Ls~n~l~~--lp~~l--------~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~L 350 (598)
... ..-+.++.+++..-.-.. .+... ....-+..+.++.|++.......+..+. ..+.+..|++
T Consensus 372 ~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~----stqtl~kldi 447 (553)
T KOG4242|consen 372 AVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLL----STQTLAKLDI 447 (553)
T ss_pred cccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhc----cCcccccccc
Confidence 322 233556666665433211 11111 1123367788888887755554443332 3457999999
Q ss_pred cCcccc
Q 040109 351 ASNEIT 356 (598)
Q Consensus 351 s~N~l~ 356 (598)
++|...
T Consensus 448 sgn~mg 453 (553)
T KOG4242|consen 448 SGNGMG 453 (553)
T ss_pred cCCCcc
Confidence 999875
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=54.90 E-value=7.8 Score=41.05 Aligned_cols=12 Identities=25% Similarity=0.390 Sum_probs=7.3
Q ss_pred ccEEEccCCccc
Q 040109 267 VDHIDLGSNRLH 278 (598)
Q Consensus 267 L~~L~L~~n~l~ 278 (598)
|++|.+.+|.+.
T Consensus 272 Leel~l~GNPlc 283 (585)
T KOG3763|consen 272 LEELVLEGNPLC 283 (585)
T ss_pred HHHeeecCCccc
Confidence 566666666654
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=53.44 E-value=8.4 Score=40.81 Aligned_cols=15 Identities=33% Similarity=0.175 Sum_probs=10.4
Q ss_pred CCccEEeeccCCCCC
Q 040109 289 ASLRYLGLLSNRLRE 303 (598)
Q Consensus 289 ~~L~~L~Ls~n~l~~ 303 (598)
..|++|-+.+|.+.+
T Consensus 270 l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 270 LPLEELVLEGNPLCT 284 (585)
T ss_pred CCHHHeeecCCcccc
Confidence 346777777777764
No 95
>PF15102 TMEM154: TMEM154 protein family
Probab=46.03 E-value=28 Score=30.13 Aligned_cols=23 Identities=9% Similarity=-0.003 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhhhhccccccc
Q 040109 547 LGFFVGFWGVCGTLLVKSSWRCG 569 (598)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~ 569 (598)
+.+++.++.++++..+++|||.+
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred HHHHHHHHHHHHheeEEeecccC
Confidence 44444444444555555666653
No 96
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=35.48 E-value=19 Score=30.22 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=9.6
Q ss_pred eehhhHHHHHHHHHHHHhhhh
Q 040109 542 YMSMILGFFVGFWGVCGTLLV 562 (598)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~ 562 (598)
++++++|.+.|+++++++++|
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y 86 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISY 86 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 97
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=28.52 E-value=42 Score=19.27 Aligned_cols=13 Identities=31% Similarity=0.128 Sum_probs=9.5
Q ss_pred CCCCCEEeCCCCc
Q 040109 465 LRLLSVMDLSYNN 477 (598)
Q Consensus 465 l~~L~~L~ls~N~ 477 (598)
+++|+.|+|++|+
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3677888888775
No 98
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=27.62 E-value=80 Score=23.13 Aligned_cols=10 Identities=20% Similarity=0.766 Sum_probs=4.0
Q ss_pred hhHHHHHHHH
Q 040109 545 MILGFFVGFW 554 (598)
Q Consensus 545 ~~~~~~~~~~ 554 (598)
+.+++++|++
T Consensus 24 il~~f~~G~l 33 (68)
T PF06305_consen 24 ILIAFLLGAL 33 (68)
T ss_pred HHHHHHHHHH
Confidence 3334444433
No 99
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=26.43 E-value=30 Score=26.09 Aligned_cols=7 Identities=29% Similarity=0.980 Sum_probs=4.1
Q ss_pred CCCCCCc
Q 040109 66 KRNCCKW 72 (598)
Q Consensus 66 ~~~~c~w 72 (598)
+.+||.|
T Consensus 61 ~~~CC~~ 67 (75)
T PF02950_consen 61 NSECCSG 67 (75)
T ss_dssp TTCBSSS
T ss_pred CCCCCCC
Confidence 4456666
No 100
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=22.48 E-value=41 Score=26.46 Aligned_cols=29 Identities=7% Similarity=-0.010 Sum_probs=17.3
Q ss_pred eeeeehhhHHHHHHHHHHHHhhhhccccc
Q 040109 539 LGFYMSMILGFFVGFWGVCGTLLVKSSWR 567 (598)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (598)
.|.|++.+-|++++++++..+++.+.+|+
T Consensus 41 yWpyLA~GGG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 41 YWPYLAAGGGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred hhHHhhccchhhhHHHHHHHHHHhhhhhh
Confidence 35566666666666666555555555554
No 101
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=22.35 E-value=43 Score=22.73 Aligned_cols=10 Identities=40% Similarity=0.766 Sum_probs=8.6
Q ss_pred CCCCCCCCCC
Q 040109 499 NPELCGLPLP 508 (598)
Q Consensus 499 np~lC~~~~~ 508 (598)
|||.|+|.+.
T Consensus 1 NP~~CdC~l~ 10 (51)
T smart00082 1 NPFICDCELR 10 (51)
T ss_pred CCccCcCCch
Confidence 8999999875
No 102
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=22.10 E-value=61 Score=32.39 Aligned_cols=8 Identities=13% Similarity=0.322 Sum_probs=3.1
Q ss_pred hhhHHHHH
Q 040109 544 SMILGFFV 551 (598)
Q Consensus 544 ~~~~~~~~ 551 (598)
.+++|+++
T Consensus 274 PIaVG~~L 281 (306)
T PF01299_consen 274 PIAVGAAL 281 (306)
T ss_pred HHHHHHHH
Confidence 33344333
No 103
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=21.10 E-value=97 Score=21.48 Aligned_cols=22 Identities=14% Similarity=0.221 Sum_probs=12.0
Q ss_pred HHHhhhhccccccceecccccc
Q 040109 556 VCGTLLVKSSWRCGYYNFLTGV 577 (598)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~ 577 (598)
++++.+........|++-.|..
T Consensus 15 lLg~~I~~~~K~ygYkht~d~~ 36 (50)
T PF12606_consen 15 LLGLSICTTLKAYGYKHTVDPL 36 (50)
T ss_pred HHHHHHHHHhhccccccccCCC
Confidence 3344444445556677767664
No 104
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.39 E-value=65 Score=41.46 Aligned_cols=32 Identities=28% Similarity=0.369 Sum_probs=27.4
Q ss_pred eccCCcCCCcCchhhhcccCCcEEECcCCcCc
Q 040109 400 DLSSNKLGGEVPEEIMDLVGLVALNLSNNNLT 431 (598)
Q Consensus 400 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 431 (598)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68899999777778888999999999999775
Done!