Query 040109
Match_columns 598
No_of_seqs 578 out of 5351
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 07:52:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040109.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040109hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.6E-58 9E-63 520.5 41.5 463 34-516 8-753 (768)
2 4eco_A Uncharacterized protein 100.0 1.2E-50 4.1E-55 447.9 29.9 448 32-504 24-602 (636)
3 4ecn_A Leucine-rich repeat pro 100.0 4.3E-49 1.5E-53 442.9 29.2 443 31-503 262-841 (876)
4 3j0a_A TOLL-like receptor 5; m 100.0 2.9E-46 1E-50 426.4 27.0 418 70-508 14-566 (844)
5 3vq2_A TLR4, TOLL-like recepto 100.0 3.5E-43 1.2E-47 387.6 31.4 409 82-508 32-564 (606)
6 3t6q_A CD180 antigen; protein- 100.0 6.2E-42 2.1E-46 377.6 32.4 413 83-507 34-565 (606)
7 1ogq_A PGIP-2, polygalacturona 100.0 9.1E-43 3.1E-47 351.2 22.4 302 34-511 2-312 (313)
8 1ziw_A TOLL-like receptor 3; i 100.0 4.8E-41 1.6E-45 375.6 37.2 120 388-507 474-627 (680)
9 3rgz_A Protein brassinosteroid 100.0 1.2E-42 4E-47 392.7 23.0 371 83-479 270-740 (768)
10 2z63_A TOLL-like receptor 4, v 100.0 2.7E-41 9.2E-46 369.8 30.1 400 82-508 28-537 (570)
11 2z81_A CD282 antigen, TOLL-lik 100.0 2.1E-41 7.3E-46 368.9 26.6 401 69-506 3-514 (549)
12 3t6q_A CD180 antigen; protein- 100.0 2.3E-40 7.8E-45 365.1 33.6 357 103-479 26-462 (606)
13 3v47_A TOLL-like receptor 5B a 100.0 1.1E-40 3.7E-45 354.6 29.6 375 67-485 5-414 (455)
14 2z7x_B TOLL-like receptor 1, v 100.0 1.5E-39 5E-44 351.9 28.0 394 82-507 21-486 (520)
15 4g8a_A TOLL-like receptor 4; l 100.0 5E-39 1.7E-43 356.2 30.9 404 82-508 52-586 (635)
16 3vq2_A TLR4, TOLL-like recepto 100.0 4.9E-39 1.7E-43 354.5 30.2 380 82-485 56-564 (606)
17 3v47_A TOLL-like receptor 5B a 100.0 5.6E-39 1.9E-43 341.4 28.9 358 112-507 30-413 (455)
18 4eco_A Uncharacterized protein 100.0 1.3E-39 4.3E-44 359.8 20.0 356 97-480 192-601 (636)
19 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.7E-38 1.3E-42 343.9 29.3 162 310-507 351-515 (562)
20 3j0a_A TOLL-like receptor 5; m 100.0 7.4E-39 2.5E-43 365.3 24.7 412 82-520 48-597 (844)
21 2z63_A TOLL-like receptor 4, v 100.0 1.7E-38 5.7E-43 347.7 26.0 381 82-488 52-540 (570)
22 4ecn_A Leucine-rich repeat pro 100.0 1.2E-38 4.2E-43 358.1 22.8 381 98-506 435-870 (876)
23 2z7x_B TOLL-like receptor 1, v 100.0 1.4E-37 4.7E-42 336.5 25.2 349 81-484 44-486 (520)
24 1ziw_A TOLL-like receptor 3; i 100.0 3.8E-37 1.3E-41 344.0 29.2 383 83-484 223-627 (680)
25 2id5_A Lingo-1, leucine rich r 100.0 2.9E-37 9.9E-42 330.2 24.9 335 103-506 25-360 (477)
26 2z81_A CD282 antigen, TOLL-lik 100.0 8.8E-37 3E-41 332.4 26.1 372 82-485 50-516 (549)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.3E-36 4.5E-41 331.7 27.4 350 82-485 52-516 (562)
28 3o6n_A APL1; leucine-rich repe 100.0 1.6E-36 5.6E-41 315.7 25.8 336 109-506 42-378 (390)
29 1o6v_A Internalin A; bacterial 100.0 6.2E-35 2.1E-39 310.9 32.9 342 83-502 47-388 (466)
30 3oja_B Anopheles plasmodium-re 100.0 1.7E-35 5.7E-40 324.9 27.5 336 110-506 49-384 (597)
31 2id5_A Lingo-1, leucine rich r 100.0 7.8E-35 2.7E-39 311.3 29.8 264 72-357 13-286 (477)
32 1o6v_A Internalin A; bacterial 100.0 1.1E-33 3.7E-38 301.3 34.4 325 82-484 68-392 (466)
33 4fmz_A Internalin; leucine ric 100.0 1.3E-33 4.3E-38 289.1 32.1 307 108-479 40-346 (347)
34 3bz5_A Internalin-J, INLJ; leu 100.0 7E-34 2.4E-38 300.8 29.0 331 82-485 42-393 (457)
35 4g8a_A TOLL-like receptor 4; l 100.0 2.1E-33 7.2E-38 311.0 29.0 382 82-484 76-585 (635)
36 3o6n_A APL1; leucine-rich repe 100.0 8.2E-34 2.8E-38 295.3 21.7 314 135-506 43-356 (390)
37 3bz5_A Internalin-J, INLJ; leu 100.0 7.7E-33 2.6E-37 292.8 28.5 312 104-480 34-353 (457)
38 4fmz_A Internalin; leucine ric 100.0 4.8E-32 1.6E-36 277.3 30.1 306 133-501 40-345 (347)
39 1jl5_A Outer protein YOPM; leu 100.0 2.3E-33 7.7E-38 296.6 20.9 330 83-484 12-377 (454)
40 3oja_B Anopheles plasmodium-re 100.0 4.8E-33 1.6E-37 305.4 22.2 313 136-506 50-362 (597)
41 1jl5_A Outer protein YOPM; leu 100.0 1.9E-31 6.6E-36 281.8 30.0 323 112-503 91-430 (454)
42 1xku_A Decorin; proteoglycan, 100.0 1.1E-30 3.9E-35 265.1 29.2 289 113-477 32-330 (330)
43 2ft3_A Biglycan; proteoglycan, 100.0 4.9E-31 1.7E-35 268.0 24.2 288 113-477 34-331 (332)
44 4fcg_A Uncharacterized protein 100.0 3.2E-32 1.1E-36 275.7 14.3 272 33-324 22-313 (328)
45 2ft3_A Biglycan; proteoglycan, 100.0 3E-30 1E-34 262.2 22.8 240 84-356 35-277 (332)
46 1z7x_W Ribonuclease inhibitor; 100.0 7.5E-33 2.6E-37 294.7 3.4 361 82-480 3-412 (461)
47 1xku_A Decorin; proteoglycan, 100.0 1.3E-29 4.5E-34 257.3 26.7 241 84-356 33-276 (330)
48 1z7x_W Ribonuclease inhibitor; 100.0 3.5E-33 1.2E-37 297.2 -2.5 359 111-501 2-410 (461)
49 2z80_A TOLL-like receptor 2, v 100.0 1E-28 3.5E-33 253.1 18.9 188 104-325 46-235 (353)
50 3zyj_A Leucine-rich repeat-con 100.0 5.9E-28 2E-32 255.1 22.4 251 187-483 44-296 (440)
51 3zyi_A Leucine-rich repeat-con 100.0 8.6E-28 3E-32 254.7 21.8 252 187-484 55-308 (452)
52 2z66_A Variable lymphocyte rec 100.0 4E-28 1.4E-32 243.6 18.2 233 212-484 28-266 (306)
53 2z80_A TOLL-like receptor 2, v 100.0 4.8E-28 1.6E-32 248.2 18.4 284 109-483 28-318 (353)
54 1ogq_A PGIP-2, polygalacturona 100.0 5.6E-28 1.9E-32 243.1 17.3 226 239-502 50-281 (313)
55 2z66_A Variable lymphocyte rec 100.0 1.2E-27 4E-32 240.2 18.5 251 215-507 10-266 (306)
56 3g06_A SSPH2 (leucine-rich rep 99.9 2.8E-26 9.6E-31 249.7 28.8 262 112-483 40-301 (622)
57 1ozn_A Reticulon 4 receptor; N 99.9 2.2E-27 7.7E-32 235.6 16.9 249 215-505 14-264 (285)
58 3g06_A SSPH2 (leucine-rich rep 99.9 3.5E-26 1.2E-30 249.0 27.0 291 56-465 11-307 (622)
59 4fcg_A Uncharacterized protein 99.9 1.6E-26 5.6E-31 233.8 21.6 235 185-479 80-314 (328)
60 3zyi_A Leucine-rich repeat-con 99.9 2.3E-26 7.9E-31 243.7 23.2 227 186-455 75-303 (452)
61 3zyj_A Leucine-rich repeat-con 99.9 2.9E-26 1E-30 242.1 23.9 251 214-507 45-297 (440)
62 1ozn_A Reticulon 4 receptor; N 99.9 4.4E-26 1.5E-30 226.2 20.5 231 76-356 7-238 (285)
63 3o53_A Protein LRIM1, AGAP0063 99.9 3.9E-28 1.3E-32 244.8 3.8 265 115-484 13-281 (317)
64 3o53_A Protein LRIM1, AGAP0063 99.9 1E-27 3.4E-32 241.8 3.7 257 139-499 12-272 (317)
65 1wwl_A Monocyte differentiatio 99.9 4E-27 1.4E-31 236.8 6.5 259 132-480 38-310 (312)
66 1wwl_A Monocyte differentiatio 99.9 3.8E-28 1.3E-32 244.3 -1.5 270 57-357 21-310 (312)
67 3oja_A Leucine-rich immune mol 99.9 5.2E-26 1.8E-30 242.6 12.4 146 187-356 35-182 (487)
68 3oja_A Leucine-rich immune mol 99.9 6.1E-26 2.1E-30 242.0 12.2 233 138-474 35-270 (487)
69 2o6q_A Variable lymphocyte rec 99.9 3.3E-24 1.1E-28 210.9 21.7 218 67-327 2-220 (270)
70 3ogk_B Coronatine-insensitive 99.9 1.8E-27 6.2E-32 261.3 -2.7 332 135-480 162-527 (592)
71 2z62_A TOLL-like receptor 4, v 99.9 9.5E-24 3.2E-28 208.3 20.1 211 239-485 28-243 (276)
72 3ogk_B Coronatine-insensitive 99.9 7.8E-26 2.7E-30 248.3 5.6 350 109-477 161-549 (592)
73 2z62_A TOLL-like receptor 4, v 99.9 1.8E-23 6.3E-28 206.3 19.8 216 104-360 22-241 (276)
74 2o6q_A Variable lymphocyte rec 99.9 3.9E-23 1.3E-27 203.2 21.1 206 240-484 17-223 (270)
75 1p9a_G Platelet glycoprotein I 99.9 1.9E-23 6.6E-28 207.3 18.3 201 239-481 10-210 (290)
76 2p1m_B Transport inhibitor res 99.9 1.1E-25 3.6E-30 247.3 0.4 354 83-479 106-519 (594)
77 1p9a_G Platelet glycoprotein I 99.9 3.2E-22 1.1E-26 198.5 20.4 202 108-324 6-207 (290)
78 3goz_A Leucine-rich repeat-con 99.9 8.3E-24 2.8E-28 217.3 8.9 234 116-356 2-266 (362)
79 3rfs_A Internalin B, repeat mo 99.9 6.3E-23 2.2E-27 201.9 13.9 200 239-485 41-241 (272)
80 3rfs_A Internalin B, repeat mo 99.9 1.8E-22 6.2E-27 198.6 16.7 196 115-356 22-218 (272)
81 4glp_A Monocyte differentiatio 99.9 3.4E-23 1.2E-27 207.9 10.5 82 393-479 223-307 (310)
82 3goz_A Leucine-rich repeat-con 99.9 5.8E-23 2E-27 210.9 11.9 186 141-356 2-209 (362)
83 4glp_A Monocyte differentiatio 99.9 7.3E-22 2.5E-26 198.2 19.2 225 239-502 64-307 (310)
84 2p1m_B Transport inhibitor res 99.9 2.8E-24 9.7E-29 235.9 -0.2 371 109-501 102-518 (594)
85 2ca6_A RAN GTPase-activating p 99.9 9.6E-24 3.3E-28 218.9 3.5 248 181-483 27-320 (386)
86 2ast_B S-phase kinase-associat 99.9 1.1E-22 3.6E-27 206.8 10.8 250 188-484 49-311 (336)
87 3m19_A Variable lymphocyte rec 99.9 6.4E-22 2.2E-26 192.3 15.4 210 267-514 16-232 (251)
88 2ast_B S-phase kinase-associat 99.9 3.6E-23 1.2E-27 210.3 5.0 265 68-361 35-311 (336)
89 1h6u_A Internalin H; cell adhe 99.9 4.9E-21 1.7E-25 191.8 19.4 191 239-480 41-231 (308)
90 1h6u_A Internalin H; cell adhe 99.9 4.8E-21 1.7E-25 191.9 19.3 195 108-326 37-231 (308)
91 2xwt_C Thyrotropin receptor; s 99.9 8.9E-22 3E-26 189.8 13.3 198 267-500 33-237 (239)
92 3m19_A Variable lymphocyte rec 99.9 5.4E-21 1.9E-25 185.7 18.8 191 68-303 3-193 (251)
93 2ca6_A RAN GTPase-activating p 99.9 1.8E-22 6E-27 209.4 8.5 256 152-459 23-320 (386)
94 2xwt_C Thyrotropin receptor; s 99.9 1.4E-21 4.9E-26 188.3 14.3 196 113-322 32-236 (239)
95 3cvr_A Invasion plasmid antige 99.8 3.5E-20 1.2E-24 199.3 15.8 211 57-336 33-254 (571)
96 4ay9_X Follicle-stimulating ho 99.8 6.1E-20 2.1E-24 187.4 15.7 230 103-354 23-257 (350)
97 3cvr_A Invasion plasmid antige 99.8 9.2E-20 3.1E-24 196.0 16.3 95 213-326 60-154 (571)
98 4ay9_X Follicle-stimulating ho 99.8 1.5E-19 5.2E-24 184.4 16.4 227 115-362 12-242 (350)
99 2o6s_A Variable lymphocyte rec 99.8 1.8E-19 6.2E-24 169.6 15.2 184 69-289 6-189 (208)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 6.4E-20 2.2E-24 174.1 11.7 158 292-485 14-172 (220)
101 2v9t_B SLIT homolog 2 protein 99.8 1.5E-19 5.3E-24 171.5 11.4 156 292-483 14-169 (220)
102 2xot_A Amphoterin-induced prot 99.8 2.5E-19 8.5E-24 183.7 11.2 176 268-480 21-203 (361)
103 2o6s_A Variable lymphocyte rec 99.8 1.4E-18 4.8E-23 163.5 15.3 69 267-335 78-147 (208)
104 2v70_A SLIT-2, SLIT homolog 2 99.8 8.7E-19 3E-23 166.3 12.9 159 314-508 13-172 (220)
105 1h6t_A Internalin B; cell adhe 99.8 3E-18 1E-22 170.0 17.1 167 267-480 48-214 (291)
106 1h6t_A Internalin B; cell adhe 99.8 7.2E-19 2.5E-23 174.4 12.6 170 239-457 46-215 (291)
107 3e6j_A Variable lymphocyte rec 99.8 2.4E-18 8.2E-23 164.4 15.0 156 291-483 21-176 (229)
108 2v9t_B SLIT homolog 2 protein 99.8 8.8E-19 3E-23 166.3 10.3 157 315-508 14-171 (220)
109 3e6j_A Variable lymphocyte rec 99.8 1.1E-17 3.7E-22 159.9 17.7 161 66-255 15-175 (229)
110 2xot_A Amphoterin-induced prot 99.8 3.6E-18 1.2E-22 175.0 13.4 175 242-455 21-202 (361)
111 1dce_A Protein (RAB geranylger 99.8 3.7E-21 1.3E-25 207.9 -9.6 196 134-358 346-548 (567)
112 1m9s_A Internalin B; cell inva 99.8 3.8E-18 1.3E-22 185.5 13.9 17 210-226 41-57 (605)
113 1m9s_A Internalin B; cell inva 99.8 3E-18 1E-22 186.3 12.9 172 109-326 40-211 (605)
114 4ezg_A Putative uncharacterize 99.7 8.8E-18 3E-22 156.5 13.2 154 286-480 41-195 (197)
115 1w8a_A SLIT protein; signaling 99.7 4.7E-18 1.6E-22 157.6 9.8 115 392-506 52-166 (192)
116 1xeu_A Internalin C; cellular 99.7 7.3E-18 2.5E-22 164.5 11.3 167 267-481 21-187 (263)
117 1dce_A Protein (RAB geranylger 99.7 7.6E-20 2.6E-24 197.7 -7.2 216 183-472 346-566 (567)
118 4ezg_A Putative uncharacterize 99.7 5.8E-17 2E-21 150.9 12.6 148 267-455 46-194 (197)
119 1xeu_A Internalin C; cellular 99.7 2.4E-17 8.2E-22 160.9 9.9 168 240-457 20-187 (263)
120 4b8c_D Glucose-repressible alc 99.7 5.7E-18 2E-22 188.7 4.2 263 33-325 127-404 (727)
121 4b8c_D Glucose-repressible alc 99.7 1.2E-17 4.2E-22 186.0 6.2 181 255-480 216-405 (727)
122 1w8a_A SLIT protein; signaling 99.7 8.3E-17 2.8E-21 149.2 10.7 176 292-507 11-188 (192)
123 2wfh_A SLIT homolog 2 protein 99.7 2.1E-16 7.2E-21 146.4 11.0 114 393-508 30-145 (193)
124 2wfh_A SLIT homolog 2 protein 99.6 5.4E-16 1.8E-20 143.7 10.1 91 393-483 53-143 (193)
125 2ell_A Acidic leucine-rich nuc 99.6 1.4E-15 4.6E-20 137.7 12.0 92 392-484 69-164 (168)
126 2o6r_A Variable lymphocyte rec 99.6 3.6E-15 1.2E-19 136.1 12.7 92 393-484 51-142 (177)
127 2ell_A Acidic leucine-rich nuc 99.6 2.8E-15 9.7E-20 135.6 11.8 130 267-455 26-160 (168)
128 3sb4_A Hypothetical leucine ri 99.6 5.4E-16 1.8E-20 156.7 6.2 283 136-472 24-327 (329)
129 2je0_A Acidic leucine-rich nuc 99.6 2.6E-15 8.8E-20 132.9 9.3 83 393-475 63-149 (149)
130 3sb4_A Hypothetical leucine ri 99.6 5.4E-16 1.9E-20 156.7 5.0 283 111-449 24-328 (329)
131 2je0_A Acidic leucine-rich nuc 99.6 8.1E-15 2.8E-19 129.7 10.9 82 267-356 19-101 (149)
132 2o6r_A Variable lymphocyte rec 99.6 1.6E-14 5.6E-19 131.8 12.0 114 393-506 27-141 (177)
133 1a9n_A U2A', U2A'; complex (nu 99.5 2.3E-14 7.9E-19 130.6 8.9 85 393-479 63-153 (176)
134 1ds9_A Outer arm dynein; leuci 99.5 3.2E-16 1.1E-20 146.0 -4.2 135 304-479 40-185 (198)
135 3g39_A Variable lymphocyte rec 99.5 1.3E-13 4.3E-18 124.9 10.0 108 396-506 11-119 (170)
136 3g39_A Variable lymphocyte rec 99.5 1.9E-13 6.6E-18 123.6 11.2 111 344-484 10-120 (170)
137 1ds9_A Outer arm dynein; leuci 99.4 2.8E-15 9.7E-20 139.6 -2.8 62 392-455 113-185 (198)
138 2r9u_A Variable lymphocyte rec 99.4 2.9E-13 9.8E-18 123.0 10.1 107 397-506 15-122 (174)
139 1a9n_A U2A', U2A'; complex (nu 99.4 2.9E-13 9.9E-18 123.3 10.1 106 240-356 43-153 (176)
140 4fdw_A Leucine rich hypothetic 99.4 7.4E-12 2.5E-16 129.3 20.0 86 391-479 297-383 (401)
141 2r9u_A Variable lymphocyte rec 99.4 8.2E-13 2.8E-17 119.9 11.3 90 394-483 33-122 (174)
142 4fdw_A Leucine rich hypothetic 99.4 1.2E-11 4.2E-16 127.6 20.0 263 112-454 113-382 (401)
143 3un9_A NLR family member X1; l 99.3 8.3E-14 2.8E-18 142.5 -0.4 44 289-332 101-146 (372)
144 4fs7_A Uncharacterized protein 99.3 2.2E-11 7.6E-16 126.0 17.2 311 106-476 65-376 (394)
145 2ifg_A High affinity nerve gro 99.3 2.4E-12 8.2E-17 130.9 9.5 107 398-506 12-120 (347)
146 2ifg_A High affinity nerve gro 99.2 1.4E-11 4.8E-16 125.1 9.0 92 391-483 28-120 (347)
147 4fs7_A Uncharacterized protein 99.2 4.4E-10 1.5E-14 116.2 19.5 322 83-471 72-393 (394)
148 3un9_A NLR family member X1; l 99.2 5.3E-12 1.8E-16 129.0 4.8 109 239-356 126-252 (372)
149 4gt6_A Cell surface protein; l 99.0 8.4E-09 2.9E-13 106.5 19.1 316 106-478 57-390 (394)
150 2ra8_A Uncharacterized protein 99.0 1E-09 3.5E-14 111.2 9.5 166 281-477 164-341 (362)
151 4gt6_A Cell surface protein; l 98.9 4.7E-08 1.6E-12 100.8 20.6 297 131-479 57-370 (394)
152 2ra8_A Uncharacterized protein 98.8 9.7E-10 3.3E-14 111.4 3.6 81 239-323 252-341 (362)
153 4h09_A Hypothetical leucine ri 98.7 1.6E-06 5.6E-11 88.7 21.2 81 393-475 262-342 (379)
154 4h09_A Hypothetical leucine ri 98.6 2.4E-06 8.1E-11 87.4 19.7 302 108-466 42-356 (379)
155 1io0_A Tropomodulin; LRR prote 98.6 2.8E-08 9.6E-13 90.7 4.5 42 285-326 32-79 (185)
156 1io0_A Tropomodulin; LRR prote 98.6 3.1E-08 1.1E-12 90.4 4.2 67 413-479 88-164 (185)
157 3rw6_A Nuclear RNA export fact 98.4 2.9E-07 9.8E-12 88.4 5.9 39 393-431 169-209 (267)
158 3rw6_A Nuclear RNA export fact 98.3 1.8E-07 6.1E-12 89.9 2.6 88 395-484 142-238 (267)
159 3e4g_A ATP synthase subunit S, 98.1 5.4E-07 1.8E-11 80.3 0.7 83 395-477 62-150 (176)
160 3e4g_A ATP synthase subunit S, 98.0 2.5E-06 8.6E-11 75.9 2.3 83 113-196 62-149 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.4 9E-05 3.1E-09 67.2 4.3 66 413-478 93-169 (197)
162 3rfe_A Platelet glycoprotein I 97.3 0.00018 6.3E-09 60.8 4.6 59 421-481 11-70 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00021 7.1E-09 64.8 5.0 56 267-322 72-136 (197)
164 3rfe_A Platelet glycoprotein I 97.0 0.0012 4.1E-08 55.8 6.8 57 397-455 11-68 (130)
165 2lz0_A Uncharacterized protein 39.6 41 0.0014 26.0 4.8 15 155-169 14-28 (100)
166 2k1k_A Ephrin type-A receptor 32.7 25 0.00086 21.8 2.0 19 542-560 13-31 (38)
167 2lz0_A Uncharacterized protein 31.5 54 0.0018 25.3 4.3 45 430-475 8-52 (100)
168 2l9u_A Receptor tyrosine-prote 29.0 24 0.00083 21.0 1.3 22 543-564 10-31 (40)
169 2jwa_A Receptor tyrosine-prote 23.5 35 0.0012 22.0 1.4 6 543-548 15-20 (44)
170 2klu_A T-cell surface glycopro 22.9 48 0.0017 23.2 2.2 18 545-562 12-29 (70)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.6e-58 Score=520.48 Aligned_cols=463 Identities=32% Similarity=0.488 Sum_probs=291.8
Q ss_pred CCcHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCccCeeeCCCCCcEEEEEcCCCCCCCCCCCcee---c------
Q 040109 34 SCLDEEKEALLAFKQGLIDESGILSSWGREDEKRNCCKWRGVRCSNKTGHVLGLDLRALSDSPVDALKGT---I------ 104 (598)
Q Consensus 34 ~~~~~~~~~l~~~k~~~~~~~~~l~~W~~~~~~~~~c~w~gv~C~~~~~~v~~l~l~~~~~~~~~~l~g~---l------ 104 (598)
.+.++|++||++||+++.||. .+++|. .+.+||.|.||+|+ .++|++++|++ ..+.|. +
T Consensus 8 ~~~~~~~~all~~k~~~~~~~-~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~------~~l~g~~~~l~~~l~~ 75 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLPDKN-LLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSS------KPLNVGFSAVSSSLLS 75 (768)
T ss_dssp CCHHHHHHHHHHHHTTCSCTT-SSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTT------SCCCEEHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHhhCCCcc-cccCCC---CCCCCcCCcceEEC--CCcEEEEECCC------CCcCCccCccChhHhc
Confidence 347899999999999999888 899997 46789999999997 68999999987 344443 2
Q ss_pred -----------------CccccCCCCCCEEECcCCCCCCCCcch--hcCCCCCCCEEECCCCCCCCCCcccc-CCC----
Q 040109 105 -----------------NPSLLKLQHLTYLDLSWNNFSGSPIPE--FIGSLSKLSELALSSAQLAGPIPHQL-GNL---- 160 (598)
Q Consensus 105 -----------------~~~l~~l~~L~~L~Ls~n~l~~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l---- 160 (598)
|+.++++++|++|+|++|.+++. +|. .++.+++|++|+|++|.+.+.+|..+ .++
T Consensus 76 L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 154 (768)
T 3rgz_A 76 LTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154 (768)
T ss_dssp CTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCS
T ss_pred cCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCC
Confidence 24566666667777776666653 555 56566666666666555554444332 222
Q ss_pred ---------------------------------------------CCCCEEEccCCCCCCCCCcccccCCCCCCEEEcCC
Q 040109 161 ---------------------------------------------SRLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGD 195 (598)
Q Consensus 161 ---------------------------------------------~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~ 195 (598)
++|++|++++|.+.. ..+.+.++++|++|++++
T Consensus 155 ~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~l~~l~~L~~L~Ls~ 232 (768)
T 3rgz_A 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFST--GIPFLGDCSALQHLDISG 232 (768)
T ss_dssp EEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCS--CCCBCTTCCSCCEEECCS
T ss_pred EEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCC--CCcccccCCCCCEEECcC
Confidence 333333333333211 112255555566666655
Q ss_pred CcCCCCCchhHhhcCCCCCcEEeccCcCCCC-----------------------------------------------CC
Q 040109 196 CKLSKFSNWFQVLSNLRSLTTLYLGHCDLPP-----------------------------------------------IS 228 (598)
Q Consensus 196 n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~-----------------------------------------------~~ 228 (598)
|.+++. ++..+..+++|++|++++|.+.+ ..
T Consensus 233 n~l~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~ 310 (768)
T 3rgz_A 233 NKLSGD--FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310 (768)
T ss_dssp SCCCSC--HHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC
T ss_pred CcCCCc--ccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCcc
Confidence 555532 23334444433333333333221 11
Q ss_pred CChhhh----------------------ccccC-----------------------------------------------
Q 040109 229 TPSLLH----------------------LNYSK----------------------------------------------- 239 (598)
Q Consensus 229 ~~~~~~----------------------~~~~~----------------------------------------------- 239 (598)
+..+.. +..++
T Consensus 311 p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~ 390 (768)
T 3rgz_A 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC
T ss_pred chHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhh
Confidence 100000 00001
Q ss_pred ----CccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCC-cchhhcCCCCC
Q 040109 240 ----SLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLRE-VPKFLGNMSSL 314 (598)
Q Consensus 240 ----~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L 314 (598)
+|++|++++|.+++.+|..+..++. |++|++++|.+++.+|..+..+++|++|++++|.+.+ +|..+..+++|
T Consensus 391 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 468 (768)
T 3rgz_A 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSE--LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468 (768)
T ss_dssp STTCCCCEEECCSSEEEEECCGGGGGCTT--CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred cccCCccEEECCCCccccccCHHHhcCCC--CCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCc
Confidence 2222222222222233444444445 6666666666666666666655555555555555554 45555555555
Q ss_pred cEEEcccCcCccchhhhhhhcCC------------CC-----CCCCCCCEEEccCccccccCCC-CCCCCcCcccccccc
Q 040109 315 KMLVLSYNELRGELSEFIQNVSS------------GS-----TKNSSLEWLYLASNEITGTIPN-LGGFPGMLMPLIYFD 376 (598)
Q Consensus 315 ~~L~Ls~n~l~~~~~~~l~~l~~------------g~-----~~~~~L~~L~Ls~N~l~~~~p~-l~~l~~l~~~~~~~~ 376 (598)
++|++++|++.+.+|..+..++. +. ..+++|+.|++++|+++|.+|. +.+++++.......+
T Consensus 469 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred eEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 55555555555444444444431 00 0112555555555555555543 333333332211111
Q ss_pred ceE------------------------------------------------------------------EEEcCCccccc
Q 040109 377 KIT------------------------------------------------------------------VTWKGGQYEYK 390 (598)
Q Consensus 377 ~~~------------------------------------------------------------------~~~~~~~~~~~ 390 (598)
.+. ....|..+..+
T Consensus 549 ~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~ 628 (768)
T 3rgz_A 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628 (768)
T ss_dssp EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC
T ss_pred ccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh
Confidence 110 11123334455
Q ss_pred ccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCE
Q 040109 391 SILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSV 470 (598)
Q Consensus 391 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 470 (598)
+.+++|+.|||++|+++|.+|..++++++|+.|+|++|+++|.+|..++++++|++|||++|+++|.+|+.+.++++|++
T Consensus 629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 708 (768)
T 3rgz_A 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708 (768)
T ss_dssp SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence 66789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCcceecCCCCCccCccCCCccCCCCCCCCCCCCCCCCCCCC
Q 040109 471 MDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLPLPNKCLDEES 516 (598)
Q Consensus 471 L~ls~N~l~~~~p~~~~~~~l~~~~~~gnp~lC~~~~~~~c~~~~~ 516 (598)
||+++|+++|.+|...++.++...++.|||.+||.|+. .|.....
T Consensus 709 L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~ 753 (768)
T 3rgz_A 709 IDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNA 753 (768)
T ss_dssp EECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC-
T ss_pred EECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCcc
Confidence 99999999999999999999999999999999999987 8965444
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.2e-50 Score=447.86 Aligned_cols=448 Identities=18% Similarity=0.240 Sum_probs=366.9
Q ss_pred ccCCcHHHHHHHHHHHhcCCCCC--------CCCCCCCCCCCCCCCCCc---cCeeeCCCCCcEEEEEcCCCCCCCCCCC
Q 040109 32 IISCLDEEKEALLAFKQGLIDES--------GILSSWGREDEKRNCCKW---RGVRCSNKTGHVLGLDLRALSDSPVDAL 100 (598)
Q Consensus 32 ~~~~~~~~~~~l~~~k~~~~~~~--------~~l~~W~~~~~~~~~c~w---~gv~C~~~~~~v~~l~l~~~~~~~~~~l 100 (598)
..+...+|+.||.++++++.++. ....+|. .+.+||.| .||+|+. .++|++++|++ +.+
T Consensus 24 ~~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~------~~l 93 (636)
T 4eco_A 24 RTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNS-NGRVTGLSLEG------FGA 93 (636)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECT-TCCEEEEECTT------SCC
T ss_pred hhhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC---CCCCcccccCCCCeEEcC-CCCEEEEEecC------ccc
Confidence 34455689999999999987442 1234797 46889999 9999975 48999999999 899
Q ss_pred ceecCccccCCCCCCEEECcCCCC------CC------------------------------------------------
Q 040109 101 KGTINPSLLKLQHLTYLDLSWNNF------SG------------------------------------------------ 126 (598)
Q Consensus 101 ~g~l~~~l~~l~~L~~L~Ls~n~l------~~------------------------------------------------ 126 (598)
.|.+|++++++++|++|+|++|.+ .+
T Consensus 94 ~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~ 173 (636)
T 4eco_A 94 SGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQK 173 (636)
T ss_dssp EEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSC
T ss_pred CCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccc
Confidence 999999999999999999999854 00
Q ss_pred ----------------------CCcchhcCCCCCCCEEECCCCCCCCC-----------------CccccC--CCCCCCE
Q 040109 127 ----------------------SPIPEFIGSLSKLSELALSSAQLAGP-----------------IPHQLG--NLSRLQV 165 (598)
Q Consensus 127 ----------------------~~~p~~l~~l~~L~~L~Ls~n~l~~~-----------------~p~~l~--~l~~L~~ 165 (598)
..+|..++++++|++|+|++|.+++. +|..++ ++++|++
T Consensus 174 ~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~ 253 (636)
T 4eco_A 174 SIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTD 253 (636)
T ss_dssp CCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred ccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCE
Confidence 01788899999999999999999986 999999 9999999
Q ss_pred EEccCCCCCCCCCcccccCCCCCCEEEcCCCc-CCCCCchhHhhcCC------CCCcEEeccCcCCCCCCC-Chhhhccc
Q 040109 166 LDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCK-LSKFSNWFQVLSNL------RSLTTLYLGHCDLPPIST-PSLLHLNY 237 (598)
Q Consensus 166 L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~l~~l------~~L~~L~l~~n~l~~~~~-~~~~~~~~ 237 (598)
|++++|.+ ....+..+.++++|++|++++|+ +++. .+|..+..+ ++|++|++++|.++..+. ..+..+
T Consensus 254 L~L~~n~l-~~~~p~~l~~l~~L~~L~Ls~n~~l~~~-~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l-- 329 (636)
T 4eco_A 254 VEVYNCPN-LTKLPTFLKALPEMQLINVACNRGISGE-QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKM-- 329 (636)
T ss_dssp EEEECCTT-CSSCCTTTTTCSSCCEEECTTCTTSCHH-HHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTC--
T ss_pred EEecCCcC-CccChHHHhcCCCCCEEECcCCCCCccc-cchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccC--
Confidence 99999997 44556789999999999999998 7750 155666665 999999999999994432 023332
Q ss_pred cCCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCC-ccEEeeccCCCCCcchhhcCCC--CC
Q 040109 238 SKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMAS-LRYLGLLSNRLREVPKFLGNMS--SL 314 (598)
Q Consensus 238 ~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~Ls~n~l~~lp~~l~~l~--~L 314 (598)
++|++|++++|.++|.+| .+..+++ |++|++++|.++ .+|..+..+++ |++|++++|.++.+|..+...+ +|
T Consensus 330 -~~L~~L~L~~N~l~g~ip-~~~~l~~--L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L 404 (636)
T 4eco_A 330 -KKLGMLECLYNQLEGKLP-AFGSEIK--LASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVM 404 (636)
T ss_dssp -TTCCEEECCSCCCEEECC-CCEEEEE--ESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCE
T ss_pred -CCCCEEeCcCCcCccchh-hhCCCCC--CCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCcc
Confidence 899999999999998888 8888888 999999999999 88888999999 9999999999999998877655 89
Q ss_pred cEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCC--CCCCCcCccccccccceEEEEcCCccc----
Q 040109 315 KMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPN--LGGFPGMLMPLIYFDKITVTWKGGQYE---- 388 (598)
Q Consensus 315 ~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~--l~~l~~l~~~~~~~~~~~~~~~~~~~~---- 388 (598)
+.|++++|.+.+..|..+.....+....++|+.|++++|.++ .+|. +..++++.......+.+. ........
T Consensus 405 ~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~ 482 (636)
T 4eco_A 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENE 482 (636)
T ss_dssp EEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTE
T ss_pred CEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccc
Confidence 999999999999999888733333334448999999999998 4554 334566655544444433 11111111
Q ss_pred ccccccccceEeccCCcCCCcCchhhh--cccCCcEEECcCCcCcccCCcccCCCCCCCeeeC------CCCccCCCCcc
Q 040109 389 YKSILGLIKIIDLSSNKLGGEVPEEIM--DLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDL------SINHFFGGIPS 460 (598)
Q Consensus 389 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L------s~N~l~~~~p~ 460 (598)
....+++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|++|+| ++|++.+.+|.
T Consensus 483 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~ 560 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560 (636)
T ss_dssp ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred cccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChH
Confidence 1223448999999999999 7888887 99999999999999997 8999999999999999 56888999999
Q ss_pred cccCCCCCCEEeCCCCcceecCCCCCccCccCCCccCCCCCCCC
Q 040109 461 SLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCG 504 (598)
Q Consensus 461 ~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~gnp~lC~ 504 (598)
.+.++++|++|++++|++ +.+|.... +++..+++++||..|-
T Consensus 561 ~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 561 GITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPNISI 602 (636)
T ss_dssp TGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTTCEE
T ss_pred HHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCCccc
Confidence 999999999999999999 68998643 8899999999999873
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.3e-49 Score=442.88 Aligned_cols=443 Identities=19% Similarity=0.250 Sum_probs=350.9
Q ss_pred CccCCcHHHHHHHHHHHhcCCCCCCCCCCCCCCC--CCCCC--CCc------------cCeeeCCCCCcEEEEEcCCCCC
Q 040109 31 NIISCLDEEKEALLAFKQGLIDESGILSSWGRED--EKRNC--CKW------------RGVRCSNKTGHVLGLDLRALSD 94 (598)
Q Consensus 31 ~~~~~~~~~~~~l~~~k~~~~~~~~~l~~W~~~~--~~~~~--c~w------------~gv~C~~~~~~v~~l~l~~~~~ 94 (598)
..+++..+|+.||++||+++.+| +|+... ...++ |.| .||+|+. .++|+.|+|++
T Consensus 262 ~~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~--- 332 (876)
T 4ecn_A 262 KETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG--- 332 (876)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT---
T ss_pred cccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc---
Confidence 34556788999999999999876 797522 01244 999 9999975 68999999999
Q ss_pred CCCCCCceecCccccCCCCCCEEEC-cCCCCCCC----------------------------------------------
Q 040109 95 SPVDALKGTINPSLLKLQHLTYLDL-SWNNFSGS---------------------------------------------- 127 (598)
Q Consensus 95 ~~~~~l~g~l~~~l~~l~~L~~L~L-s~n~l~~~---------------------------------------------- 127 (598)
+.+.|.+|++++++++|++|+| ++|.+.+.
T Consensus 333 ---~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~ 409 (876)
T 4ecn_A 333 ---FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAIN 409 (876)
T ss_dssp ---TCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHH
T ss_pred ---CCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhh
Confidence 8999999999999999999999 77743221
Q ss_pred -----------------------------CcchhcCCCCCCCEEECCCCCCCC-----------------CCccccC--C
Q 040109 128 -----------------------------PIPEFIGSLSKLSELALSSAQLAG-----------------PIPHQLG--N 159 (598)
Q Consensus 128 -----------------------------~~p~~l~~l~~L~~L~Ls~n~l~~-----------------~~p~~l~--~ 159 (598)
.+|..++++++|++|+|++|.+++ .+|..++ +
T Consensus 410 ~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~ 489 (876)
T 4ecn_A 410 RNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN 489 (876)
T ss_dssp TCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG
T ss_pred hCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhcc
Confidence 078889999999999999999998 3899888 9
Q ss_pred CCCCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCc-CCCCCchhHhhcC-------CCCCcEEeccCcCCCCCCC-C
Q 040109 160 LSRLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCK-LSKFSNWFQVLSN-------LRSLTTLYLGHCDLPPIST-P 230 (598)
Q Consensus 160 l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~l~~-------l~~L~~L~l~~n~l~~~~~-~ 230 (598)
+++|++|+|++|.+ ....+..+.++++|++|++++|+ +++. .+|..+.. +++|++|++++|.++..+. .
T Consensus 490 L~~L~~L~Ls~N~l-~~~iP~~l~~L~~L~~L~Ls~N~~lsg~-~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~ 567 (876)
T 4ecn_A 490 LKDLTDVELYNCPN-MTQLPDFLYDLPELQSLNIACNRGISAA-QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASA 567 (876)
T ss_dssp CTTCCEEEEESCTT-CCSCCGGGGGCSSCCEEECTTCTTSCHH-HHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHH
T ss_pred CCCCCEEECcCCCC-CccChHHHhCCCCCCEEECcCCCCcccc-cchHHHHhhhhcccccCCccEEEeeCCcCCccCChh
Confidence 99999999999987 44556779999999999999998 7750 14444444 4599999999999994332 0
Q ss_pred hhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCC-ccEEeeccCCCCCcchhhc
Q 040109 231 SLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMAS-LRYLGLLSNRLREVPKFLG 309 (598)
Q Consensus 231 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~Ls~n~l~~lp~~l~ 309 (598)
.+..+ ++|+.|++++|.++ .+| .+..+++ |+.|++++|.++ .+|..+..+++ |++|++++|.++.+|..+.
T Consensus 568 ~l~~L---~~L~~L~Ls~N~l~-~lp-~~~~L~~--L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~ 639 (876)
T 4ecn_A 568 SLQKM---VKLGLLDCVHNKVR-HLE-AFGTNVK--LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN 639 (876)
T ss_dssp HHTTC---TTCCEEECTTSCCC-BCC-CCCTTSE--ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCC
T ss_pred hhhcC---CCCCEEECCCCCcc-cch-hhcCCCc--ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhh
Confidence 23332 89999999999999 777 8888888 999999999999 88888999998 9999999999999998777
Q ss_pred CCCC--CcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCC-C-CCCCcCccccccccceEEEEcCC
Q 040109 310 NMSS--LKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPN-L-GGFPGMLMPLIYFDKITVTWKGG 385 (598)
Q Consensus 310 ~l~~--L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~-l-~~l~~l~~~~~~~~~~~~~~~~~ 385 (598)
.++. |+.|++++|++.+.+|...... +....++|+.|++++|.++ .+|. + ..+++|..+....+.+. .....
T Consensus 640 ~~~~~~L~~L~Ls~N~l~g~ip~l~~~l--~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~ 715 (876)
T 4ecn_A 640 AKSVYVMGSVDFSYNKIGSEGRNISCSM--DDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPEN 715 (876)
T ss_dssp TTCSSCEEEEECCSSCTTTTSSSCSSCT--TTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTT
T ss_pred ccccCCCCEEECcCCcCCCccccchhhh--ccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChH
Confidence 6654 9999999999988766433111 1123347888999998888 4443 2 24555554443333332 11111
Q ss_pred ccc----ccccccccceEeccCCcCCCcCchhhh--cccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCC------Cc
Q 040109 386 QYE----YKSILGLIKIIDLSSNKLGGEVPEEIM--DLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSI------NH 453 (598)
Q Consensus 386 ~~~----~~~~l~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~------N~ 453 (598)
... ..+.+++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++ |+
T Consensus 716 ~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~ 793 (876)
T 4ecn_A 716 SLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNR 793 (876)
T ss_dssp SSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCB
T ss_pred HhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccc
Confidence 111 1234458999999999999 7888887 99999999999999996 899999999999999976 88
Q ss_pred cCCCCcccccCCCCCCEEeCCCCcceecCCCCCccCccCCCccCCCCCCC
Q 040109 454 FFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELC 503 (598)
Q Consensus 454 l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~gnp~lC 503 (598)
+.+.+|..+.++++|+.|+|++|++ +.+|... .+++..+++++||...
T Consensus 794 l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l-~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 794 ILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL-TPQLYILDIADNPNIS 841 (876)
T ss_dssp CCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-CSSSCEEECCSCTTCE
T ss_pred ccccChHHHhcCCCCCEEECCCCCC-CccCHhh-cCCCCEEECCCCCCCc
Confidence 8899999999999999999999999 7899873 3688889999998754
No 4
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-46 Score=426.37 Aligned_cols=418 Identities=20% Similarity=0.207 Sum_probs=273.6
Q ss_pred CCccCeeeCCCCCcEEEEEcCCCCCCCCCCCceecCccccCCCCCCEEECcCCCCCCCCc-chhcCCCCCCCEEECCCCC
Q 040109 70 CKWRGVRCSNKTGHVLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPI-PEFIGSLSKLSELALSSAQ 148 (598)
Q Consensus 70 c~w~gv~C~~~~~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~-p~~l~~l~~L~~L~Ls~n~ 148 (598)
|.|..|.+ ....++.||+++ +.+++..|.+|.++++|++|+|++|...+. + |..|.++++|++|+|++|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~------N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSF------NYIRTVTASSFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEES------CCCCEECSSSCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECTTCC
T ss_pred CCCCCCCC--CCCCcCEEECCC------CcCCccChhHCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECCCCc
Confidence 56777776 456789999998 788888888899999999999999866553 5 7788999999999999999
Q ss_pred CCCCCccccCCCCCCCEEEccCCCCCCCCC-cccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCC
Q 040109 149 LAGPIPHQLGNLSRLQVLDLRFNNLFSSGN-LDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPI 227 (598)
Q Consensus 149 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 227 (598)
+++..|..|+++++|++|+|++|.+..... ...+.++++|++|++++|.+++.+ .+..+.++++|++|++++|.+++.
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY-LHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC-CCGGGGTCSSCCEEEEESSCCCCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc-cchhHhhCCCCCEEECCCCcCCee
Confidence 988888899999999999999998733222 234888999999999999888753 225688889999999998888776
Q ss_pred CCChhhhccc-----------------------c------CCccEEEccCCCCCCCcchhhhhc----------------
Q 040109 228 STPSLLHLNY-----------------------S------KSLEVIDLSNNYLTNSIYPWLLNV---------------- 262 (598)
Q Consensus 228 ~~~~~~~~~~-----------------------~------~~L~~L~Ls~n~l~~~~~~~l~~~---------------- 262 (598)
.+..+..... + ..|+.|++++|.+++..+..+...
T Consensus 164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence 5543322100 0 126777777776655444333221
Q ss_pred --------------------CccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCC-cchhhcCCCCCcEEEccc
Q 040109 263 --------------------SSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLRE-VPKFLGNMSSLKMLVLSY 321 (598)
Q Consensus 263 --------------------~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~ 321 (598)
....++.|++++|.+.+..+..+..+++|++|++++|++++ .|..+.++++|++|++++
T Consensus 244 ~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 323 (844)
T 3j0a_A 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323 (844)
T ss_dssp BCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES
T ss_pred cccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCC
Confidence 00126677777777766666666677777777777777766 345666667777777777
Q ss_pred CcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCC-CCCCCcCccccccccce-------------------E--
Q 040109 322 NELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPN-LGGFPGMLMPLIYFDKI-------------------T-- 379 (598)
Q Consensus 322 n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~-l~~l~~l~~~~~~~~~~-------------------~-- 379 (598)
|.+.+..|..+..++ +|+.|++++|.+++..+. +.++++|.......+.+ .
T Consensus 324 N~l~~~~~~~~~~l~-------~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l 396 (844)
T 3j0a_A 324 NLLGELYSSNFYGLP-------KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTL 396 (844)
T ss_dssp CCCSCCCSCSCSSCT-------TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCC
T ss_pred CCCCccCHHHhcCCC-------CCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccc
Confidence 776666666665555 455555555554433322 22333332211110000 0
Q ss_pred ---------EEEcC------CcccccccccccceEeccCCcCCC------------------------------cCchhh
Q 040109 380 ---------VTWKG------GQYEYKSILGLIKIIDLSSNKLGG------------------------------EVPEEI 414 (598)
Q Consensus 380 ---------~~~~~------~~~~~~~~l~~L~~L~Ls~n~l~~------------------------------~~p~~l 414 (598)
..... ........+++|+.|+|++|++++ ..+..|
T Consensus 397 ~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 476 (844)
T 3j0a_A 397 PKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476 (844)
T ss_dssp CCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCS
T ss_pred cccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhh
Confidence 00000 000011234444444444444442 233446
Q ss_pred hcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcceecCCCCCccCccCCC
Q 040109 415 MDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGAS 494 (598)
Q Consensus 415 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~ 494 (598)
..+++|+.|+|++|++++..|..|..+++|++|+|++|++++..|..+. ++|+.|++++|++++..|. .+.++..+
T Consensus 477 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~--~~~~L~~l 552 (844)
T 3j0a_A 477 EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPD--VFVSLSVL 552 (844)
T ss_dssp SCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSC--CCSSCCEE
T ss_pred cCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChh--HhCCcCEE
Confidence 6677777777777777776777777777777777777777766555554 6777777777777776665 35678888
Q ss_pred ccCCCCCCCCCCCC
Q 040109 495 TYAGNPELCGLPLP 508 (598)
Q Consensus 495 ~~~gnp~lC~~~~~ 508 (598)
++.|||+.|+|++.
T Consensus 553 ~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 553 DITHNKFICECELS 566 (844)
T ss_dssp EEEEECCCCSSSCC
T ss_pred EecCCCcccccccH
Confidence 99999999988753
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.5e-43 Score=387.59 Aligned_cols=409 Identities=18% Similarity=0.155 Sum_probs=287.4
Q ss_pred CcEEEEEcCCCCCCCCCCCceecCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCC
Q 040109 82 GHVLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLS 161 (598)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 161 (598)
.+++.+++++ +.+++..+..|.++++|++|++++|.+++. .|..|.++++|++|+|++|.+++..|..|++++
T Consensus 32 ~~l~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 104 (606)
T 3vq2_A 32 SSTKNIDLSF------NPLKILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104 (606)
T ss_dssp TTCCEEECTT------SCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT
T ss_pred CCcCEEECCC------CCcCEeChhhccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCCcc
Confidence 5688999998 888888888999999999999999999875 678899999999999999999988899999999
Q ss_pred CCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccC--
Q 040109 162 RLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSK-- 239 (598)
Q Consensus 162 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~-- 239 (598)
+|++|++++|.+ ....+..+.++++|++|++++|.+.+.. ++..+.++++|++|++++|.+++..+..+.....++
T Consensus 105 ~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~-lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~ 182 (606)
T 3vq2_A 105 SLENLVAVETKL-ASLESFPIGQLITLKKLNVAHNFIHSCK-LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV 182 (606)
T ss_dssp TCCEEECTTSCC-CCSSSSCCTTCTTCCEEECCSSCCCCCC-CCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTC
T ss_pred cCCEEEccCCcc-ccccccccCCCCCCCEEeCCCCccccee-chHhHhhcCCCCEEEccCCcceecChhhhhhhhccccc
Confidence 999999999997 3344456899999999999999998642 457899999999999999999887665444332111
Q ss_pred ----------------------CccEEEccCCCCCC-Ccchh--------------------------------------
Q 040109 240 ----------------------SLEVIDLSNNYLTN-SIYPW-------------------------------------- 258 (598)
Q Consensus 240 ----------------------~L~~L~Ls~n~l~~-~~~~~-------------------------------------- 258 (598)
+|+.|++++|.+++ ..|..
T Consensus 183 l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~ 262 (606)
T 3vq2_A 183 NLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262 (606)
T ss_dssp CCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSE
T ss_pred cceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhcc
Confidence 34555555554321 00000
Q ss_pred ------------------hhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcch--------------
Q 040109 259 ------------------LLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPK-------------- 306 (598)
Q Consensus 259 ------------------l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~-------------- 306 (598)
+..+++ |+.|++++|.+. .+| .+..+++|++|++++|.++.+|.
T Consensus 263 l~~l~l~~~~~~~~~~~~~~~l~~--L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n 338 (606)
T 3vq2_A 263 IDEFRLTYTNDFSDDIVKFHCLAN--VSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMN 338 (606)
T ss_dssp EEEEEECCCTTCCGGGGSCGGGTT--CSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESC
T ss_pred HhheeccccccccccccccccCCC--CCEEEecCccch-hhh-hccccccCCEEEcccccCcccccCCCCccceeeccCC
Confidence 111222 333333333332 112 23333333333333333322221
Q ss_pred ------hhcCCCCCcEEEcccCcCccch--hhhhhhcCC----------------CCCCCCCCCEEEccCccccccCC--
Q 040109 307 ------FLGNMSSLKMLVLSYNELRGEL--SEFIQNVSS----------------GSTKNSSLEWLYLASNEITGTIP-- 360 (598)
Q Consensus 307 ------~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~l~~----------------g~~~~~~L~~L~Ls~N~l~~~~p-- 360 (598)
.+..+++|++|++++|.+++.. |..+..++. ....+++|+.|++++|.+++..|
T Consensus 339 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 418 (606)
T 3vq2_A 339 KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFS 418 (606)
T ss_dssp SSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTT
T ss_pred cCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChh
Confidence 2334566666666666666542 444544441 00112355556666655555444
Q ss_pred CCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCC-cCchhhhcccCCcEEECcCCcCcccCCcccC
Q 040109 361 NLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGG-EVPEEIMDLVGLVALNLSNNNLTGQITPRIG 439 (598)
Q Consensus 361 ~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 439 (598)
.+.+++++.......+.+. +..+..+..+++|++|++++|.+++ .+|..+..+++|++|++++|++++..|..+.
T Consensus 419 ~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 494 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTK----IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494 (606)
T ss_dssp TTTTCTTCCEEECTTSCCE----ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred hhhccccCCEEECcCCCCC----ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhc
Confidence 3445555544433333332 2234456778899999999999987 4788899999999999999999988899999
Q ss_pred CCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcceecCCCC-CccC-ccCCCccCCCCCCCCCCCC
Q 040109 440 QLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKG-TQLQ-RFGASTYAGNPELCGLPLP 508 (598)
Q Consensus 440 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~-~l~~~~~~gnp~lC~~~~~ 508 (598)
.+++|++|++++|++++..|..+.++++|++|++++|+++ .+|.. ..++ ++..+++.+||+.|+|++.
T Consensus 495 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 9999999999999999988999999999999999999998 56665 3444 5888999999999999864
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.2e-42 Score=377.63 Aligned_cols=413 Identities=22% Similarity=0.217 Sum_probs=234.5
Q ss_pred cEEEEEcCCCCCCCCCCCceecCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCC
Q 040109 83 HVLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSR 162 (598)
Q Consensus 83 ~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 162 (598)
.++.+++++ +.+++..|.+|.++++|++|+|++|.+.+. .|..|..+++|++|+|++|.+++..|..|+++++
T Consensus 34 ~l~~L~Ls~------n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 106 (606)
T 3t6q_A 34 STECLEFSF------NVLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106 (606)
T ss_dssp TCCEEECTT------CCCSEECTTTSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTT
T ss_pred cCcEEEccC------CccCcCChhHhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhccccc
Confidence 466777776 566655566666666666666666666653 4556666666666666666666555556666666
Q ss_pred CCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCc----------------------hhHhhcCCCCCc--EEe
Q 040109 163 LQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSN----------------------WFQVLSNLRSLT--TLY 218 (598)
Q Consensus 163 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~----------------------~~~~l~~l~~L~--~L~ 218 (598)
|++|++++|.+ ....+..+.++++|++|++++|.+.+++. .+..+..+++|+ .|+
T Consensus 107 L~~L~L~~n~i-~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~ 185 (606)
T 3t6q_A 107 LKHLFFIQTGI-SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185 (606)
T ss_dssp CCEEECTTSCC-SCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEE
T ss_pred ccEeeccccCc-ccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEe
Confidence 66666666655 21212234444555555555554443310 134455555555 556
Q ss_pred ccCcCCCCCCCChhhhcc-----------------------------------------------c-cCCccEEEccCCC
Q 040109 219 LGHCDLPPISTPSLLHLN-----------------------------------------------Y-SKSLEVIDLSNNY 250 (598)
Q Consensus 219 l~~n~l~~~~~~~~~~~~-----------------------------------------------~-~~~L~~L~Ls~n~ 250 (598)
+++|.+.+..+..+.... . ..+|+.|++++|.
T Consensus 186 l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~ 265 (606)
T 3t6q_A 186 LNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265 (606)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC
T ss_pred cCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCc
Confidence 666655544432221100 0 0034445555555
Q ss_pred CCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCc-chhhcCCCCCcEEEcccCcCccchh
Q 040109 251 LTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREV-PKFLGNMSSLKMLVLSYNELRGELS 329 (598)
Q Consensus 251 l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~~~~ 329 (598)
+++..+..+..+++ |++|++++|.++ .+|..+..+++|++|++++|.++++ |..+..+++|++|++++|.+.+.+|
T Consensus 266 l~~~~~~~~~~l~~--L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 342 (606)
T 3t6q_A 266 FFNISSNTFHCFSG--LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342 (606)
T ss_dssp CSSCCTTTTTTCTT--CSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC
T ss_pred cCccCHHHhccccC--CCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc
Confidence 54444444555555 555555555555 4444555555555555555555542 3344444444444444444443222
Q ss_pred h-hhhhcCC-------------------CCCCCCCCCEEEccCccccccCCC-CCCCCcCccccccccceE---------
Q 040109 330 E-FIQNVSS-------------------GSTKNSSLEWLYLASNEITGTIPN-LGGFPGMLMPLIYFDKIT--------- 379 (598)
Q Consensus 330 ~-~l~~l~~-------------------g~~~~~~L~~L~Ls~N~l~~~~p~-l~~l~~l~~~~~~~~~~~--------- 379 (598)
. .+..++. ....+++|++|++++|.+++..|. +.+++++.......+.+.
T Consensus 343 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 422 (606)
T 3t6q_A 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ 422 (606)
T ss_dssp SSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTT
T ss_pred hhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhh
Confidence 2 1222220 000122555555555555544332 333333333221111110
Q ss_pred -------EE-----EcCCcccccccccccceEeccCCcCCCc---CchhhhcccCCcEEECcCCcCcccCCcccCCCCCC
Q 040109 380 -------VT-----WKGGQYEYKSILGLIKIIDLSSNKLGGE---VPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSL 444 (598)
Q Consensus 380 -------~~-----~~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 444 (598)
.. ..+..+..+..+++|++|++++|.+++. .+..+..+++|++|++++|++++..|..+..+++|
T Consensus 423 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 502 (606)
T 3t6q_A 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502 (606)
T ss_dssp TCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCC
Confidence 00 0222334455677788888888887652 23567788888888888888887778888888888
Q ss_pred CeeeCCCCccCCCCcccccCCCCCCEEeCCCCcceecCCCC-CccCccCCCccCCCCCCCCCCC
Q 040109 445 DFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKG-TQLQRFGASTYAGNPELCGLPL 507 (598)
Q Consensus 445 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~gnp~lC~~~~ 507 (598)
++|+|++|++++..|+.+.+++.| +|++++|++++..|.. ..++++..+++.|||+.|+|+.
T Consensus 503 ~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred CEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 888888888888888888888888 8888888888665553 4567888899999999998873
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=9.1e-43 Score=351.18 Aligned_cols=302 Identities=34% Similarity=0.607 Sum_probs=214.5
Q ss_pred CCcHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCC--ccCeeeCCCC--CcEEEEEcCCCCCCCCCCCce--ecCcc
Q 040109 34 SCLDEEKEALLAFKQGLIDESGILSSWGREDEKRNCCK--WRGVRCSNKT--GHVLGLDLRALSDSPVDALKG--TINPS 107 (598)
Q Consensus 34 ~~~~~~~~~l~~~k~~~~~~~~~l~~W~~~~~~~~~c~--w~gv~C~~~~--~~v~~l~l~~~~~~~~~~l~g--~l~~~ 107 (598)
.|.++|++||++||+++.+|. .+.+|. .+.+||. |.||.|+... ++|+.+++++ +.+.| .+|+.
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~---~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~------~~l~~~~~~~~~ 71 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWL---PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG------LNLPKPYPIPSS 71 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCC---TTSCTTTTCSTTEEECCSSSCCCEEEEEEEC------CCCSSCEECCGG
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCC---CCCCCCcCCCcceEeCCCCCCceEEEEECCC------CCccCCcccChh
Confidence 599999999999999998776 789997 3678998 9999997544 7888888887 67777 67777
Q ss_pred ccCCCCCCEEECcC-CCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCC
Q 040109 108 LLKLQHLTYLDLSW-NNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLS 186 (598)
Q Consensus 108 l~~l~~L~~L~Ls~-n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~ 186 (598)
+.++++|++|++++ |.+.+. +|..++.+++|++|++++|.+++.+|..|.++++|++|++++|.+
T Consensus 72 l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l------------- 137 (313)
T 1ogq_A 72 LANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL------------- 137 (313)
T ss_dssp GGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE-------------
T ss_pred HhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCcc-------------
Confidence 77777777777774 666654 666666666666666666666555555554444444444444432
Q ss_pred CCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccC
Q 040109 187 SLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNL 266 (598)
Q Consensus 187 ~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~ 266 (598)
T Consensus 138 -------------------------------------------------------------------------------- 137 (313)
T 1ogq_A 138 -------------------------------------------------------------------------------- 137 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEccCCccccccchhhcCCCCccEEeeccCCCCC-cchhhcCCC-CCcEEEcccCcCccchhhhhhhcCCCCCCCCC
Q 040109 267 VDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLRE-VPKFLGNMS-SLKMLVLSYNELRGELSEFIQNVSSGSTKNSS 344 (598)
Q Consensus 267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~-~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~ 344 (598)
++.+|..+..+++|++|++++|.+++ +|..+..++ +|++|++++|++.+..|..+..+
T Consensus 138 -----------~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l--------- 197 (313)
T 1ogq_A 138 -----------SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--------- 197 (313)
T ss_dssp -----------ESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC---------
T ss_pred -----------CCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC---------
Confidence 11122222223333333333333332 334444444 55555555555555555444332
Q ss_pred CCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEE
Q 040109 345 LEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALN 424 (598)
Q Consensus 345 L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 424 (598)
. |+.|++++|.+++.+|..+..+++|+.|+
T Consensus 198 -------------------------------------------------~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 227 (313)
T 1ogq_A 198 -------------------------------------------------N-LAFVDLSRNMLEGDASVLFGSDKNTQKIH 227 (313)
T ss_dssp -------------------------------------------------C-CSEEECCSSEEEECCGGGCCTTSCCSEEE
T ss_pred -------------------------------------------------c-ccEEECcCCcccCcCCHHHhcCCCCCEEE
Confidence 1 45555555555556677788888899999
Q ss_pred CcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcceecCCCCCccCccCCCccCCCCCCCC
Q 040109 425 LSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCG 504 (598)
Q Consensus 425 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~gnp~lC~ 504 (598)
+++|++++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|....++++..+.+.+||++||
T Consensus 228 L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 228 LAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred CCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccC
Confidence 999999866665 7888999999999999999999999999999999999999999999998899999999999999999
Q ss_pred CCCCCCC
Q 040109 505 LPLPNKC 511 (598)
Q Consensus 505 ~~~~~~c 511 (598)
.|+. .|
T Consensus 307 ~p~~-~C 312 (313)
T 1ogq_A 307 SPLP-AC 312 (313)
T ss_dssp TTSS-CC
T ss_pred CCCC-CC
Confidence 8876 46
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.8e-41 Score=375.55 Aligned_cols=120 Identities=23% Similarity=0.201 Sum_probs=72.3
Q ss_pred cccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCccc-------------------------------CC-
Q 040109 388 EYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQ-------------------------------IT- 435 (598)
Q Consensus 388 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-------------------------------~p- 435 (598)
..++.+++|+.|++++|++++..+..+..+++|++|++++|++++. +|
T Consensus 474 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~ 553 (680)
T 1ziw_A 474 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553 (680)
T ss_dssp CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH
Confidence 3445566777777777777765555566666666666666665532 22
Q ss_pred cccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcceecCCCCC--ccCccCCCccCCCCCCCCCCC
Q 040109 436 PRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGT--QLQRFGASTYAGNPELCGLPL 507 (598)
Q Consensus 436 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~--~~~~l~~~~~~gnp~lC~~~~ 507 (598)
..|.++++|++|++++|++++..+..|.++++|+.|++++|++++..|... .++++..+++.||||.|+|+.
T Consensus 554 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred HHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 234455555555555555554444445555555555555555554333211 456778888999999999985
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-42 Score=392.67 Aligned_cols=371 Identities=32% Similarity=0.426 Sum_probs=281.8
Q ss_pred cEEEEEcCCCCCCCCCCCceecCccccCC-CCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccc-cCCC
Q 040109 83 HVLGLDLRALSDSPVDALKGTINPSLLKL-QHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQ-LGNL 160 (598)
Q Consensus 83 ~v~~l~l~~~~~~~~~~l~g~l~~~l~~l-~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l 160 (598)
.++.+++++ +.++|.+|..+... ++|++|++++|.+++. +|..++.+++|++|++++|.+++.+|.. +.++
T Consensus 270 ~L~~L~L~~------n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l 342 (768)
T 3rgz_A 270 SLQYLSLAE------NKFTGEIPDFLSGACDTLTGLDLSGNHFYGA-VPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342 (768)
T ss_dssp TCCEEECCS------SEEEESCCCCSCTTCTTCSEEECCSSEEEEC-CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTC
T ss_pred CCCEEECcC------CccCCccCHHHHhhcCcCCEEECcCCcCCCc-cchHHhcCCCccEEECCCCcccCcCCHHHHhcC
Confidence 455566655 45555555555443 5555555555555543 5555555555555555555555444443 5555
Q ss_pred CCCCEEEccCCCCC------------------------CCCCcccccC--CCCCCEEEcCCCcCCCCCchhHhhcCCCCC
Q 040109 161 SRLQVLDLRFNNLF------------------------SSGNLDWLSY--LSSLRYLDLGDCKLSKFSNWFQVLSNLRSL 214 (598)
Q Consensus 161 ~~L~~L~Ls~n~l~------------------------~~~~~~~l~~--l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L 214 (598)
++|++|++++|.+. ....+..+.. +++|++|++++|.+++. ++..+..+++|
T Consensus 343 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~--~p~~l~~l~~L 420 (768)
T 3rgz_A 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK--IPPTLSNCSEL 420 (768)
T ss_dssp TTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE--CCGGGGGCTTC
T ss_pred CCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccc--cCHHHhcCCCC
Confidence 55555555555441 1111222222 56777777777777653 45788899999
Q ss_pred cEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEE
Q 040109 215 TTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYL 294 (598)
Q Consensus 215 ~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 294 (598)
++|++++|.+++..+..+... ++|+.|++++|.+++.+|..+..++. |++|++++|.+++.+|..+..+++|++|
T Consensus 421 ~~L~Ls~N~l~~~~p~~l~~l---~~L~~L~L~~n~l~~~~p~~~~~l~~--L~~L~L~~N~l~~~~p~~l~~l~~L~~L 495 (768)
T 3rgz_A 421 VSLHLSFNYLSGTIPSSLGSL---SKLRDLKLWLNMLEGEIPQELMYVKT--LETLILDFNDLTGEIPSGLSNCTNLNWI 495 (768)
T ss_dssp CEEECCSSEEESCCCGGGGGC---TTCCEEECCSSCCCSCCCGGGGGCTT--CCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred CEEECcCCcccCcccHHHhcC---CCCCEEECCCCcccCcCCHHHcCCCC--ceEEEecCCcccCcCCHHHhcCCCCCEE
Confidence 999999999998877544443 89999999999999999999999999 9999999999999999999999999999
Q ss_pred eeccCCCCC-cchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCC-CCCCC------
Q 040109 295 GLLSNRLRE-VPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPN-LGGFP------ 366 (598)
Q Consensus 295 ~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~-l~~l~------ 366 (598)
++++|++++ +|..+..+++|++|++++|++.+.+|..+..++ +|+.|++++|+++|.+|. +.+..
T Consensus 496 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-------~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~ 568 (768)
T 3rgz_A 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR-------SLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT-------TCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred EccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC-------CCCEEECCCCccCCcCChHHhcccchhhhh
Confidence 999999996 899999999999999999999999999999988 999999999999998885 11110
Q ss_pred ----------------------------------------------------------------cCccccccccceEEEE
Q 040109 367 ----------------------------------------------------------------GMLMPLIYFDKITVTW 382 (598)
Q Consensus 367 ----------------------------------------------------------------~l~~~~~~~~~~~~~~ 382 (598)
.+.......+ ..
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N----~l 644 (768)
T 3rgz_A 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN----ML 644 (768)
T ss_dssp TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS----CC
T ss_pred ccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC----cc
Confidence 0100001111 12
Q ss_pred cCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccc
Q 040109 383 KGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSL 462 (598)
Q Consensus 383 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 462 (598)
.|.++..++.+++|+.|+|++|+++|.+|..++++++|+.|||++|+++|.+|..++.+++|++||+++|+++|.+|+.
T Consensus 645 ~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~- 723 (768)
T 3rgz_A 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM- 723 (768)
T ss_dssp BSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-
T ss_pred cccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-
Confidence 5677788899999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred cCCCCCCEEeCCCCcce
Q 040109 463 SRLRLLSVMDLSYNNFS 479 (598)
Q Consensus 463 ~~l~~L~~L~ls~N~l~ 479 (598)
..+.++....+.+|+--
T Consensus 724 ~~~~~~~~~~~~gN~~L 740 (768)
T 3rgz_A 724 GQFETFPPAKFLNNPGL 740 (768)
T ss_dssp SSGGGSCGGGGCSCTEE
T ss_pred hhhccCCHHHhcCCchh
Confidence 34556666777888643
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.7e-41 Score=369.78 Aligned_cols=400 Identities=22% Similarity=0.190 Sum_probs=295.3
Q ss_pred CcEEEEEcCCCCCCCCCCCceecCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCC
Q 040109 82 GHVLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLS 161 (598)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 161 (598)
..++.+++++ +.+++..+.+|.++++|++|++++|.+++. .|..|..+++|++|++++|.+++..|..|++++
T Consensus 28 ~~l~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (570)
T 2z63_A 28 FSTKNLDLSF------NPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (570)
T ss_dssp SSCCEEECCS------CCCCEECTTTTTTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred ccccEEEccC------CccCccChhHhhCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCCccCHhhhcCcc
Confidence 4678899988 788887778899999999999999998864 567788999999999999999877778899999
Q ss_pred CCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCc
Q 040109 162 RLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSL 241 (598)
Q Consensus 162 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L 241 (598)
+|++|++++|.+. ......+.++++|++|++++|.+..++ +|..+.++++|++|++++|.+++..+..+... ++|
T Consensus 101 ~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~-lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L 175 (570)
T 2z63_A 101 SLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL---HQM 175 (570)
T ss_dssp TCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCC-CCGGGGGCTTCCEEECTTSCCCEECGGGGHHH---HTC
T ss_pred ccccccccccccc-cCCCccccccccccEEecCCCccceec-ChhhhcccCCCCEEeCcCCccceecHHHccch---hcc
Confidence 9999999999873 333334888999999999999888642 45678889999999999998887665434333 344
Q ss_pred ----cEEEccCCCCCCCcc-------------------------------------------------------------
Q 040109 242 ----EVIDLSNNYLTNSIY------------------------------------------------------------- 256 (598)
Q Consensus 242 ----~~L~Ls~n~l~~~~~------------------------------------------------------------- 256 (598)
+.|++++|.+++..+
T Consensus 176 ~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~ 255 (570)
T 2z63_A 176 PLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255 (570)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGG
T ss_pred chhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcccc
Confidence 566666666554333
Q ss_pred --------------------hhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcchhh--------
Q 040109 257 --------------------PWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFL-------- 308 (598)
Q Consensus 257 --------------------~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l-------- 308 (598)
..+..++. |+.|++++|.++ .+|..+..+ +|++|++++|.+..+|...
T Consensus 256 ~l~l~~l~l~~~~~~~~~~~~~~~~l~~--L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~ 331 (570)
T 2z63_A 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTN--VSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLT 331 (570)
T ss_dssp GSEEEEEEEEETTEEESCSTTTTGGGTT--CSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEE
T ss_pred ccchhhhhhhcchhhhhhchhhhcCcCc--ccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCcccccccCEEe
Confidence 22333444 666666666665 355555555 5556666555555444310
Q ss_pred ------------cCCCCCcEEEcccCcCccch--hhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCcccccc
Q 040109 309 ------------GNMSSLKMLVLSYNELRGEL--SEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIY 374 (598)
Q Consensus 309 ------------~~l~~L~~L~Ls~n~l~~~~--~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~ 374 (598)
..+++|++|++++|.+++.. +..+..++ +|+.|++++|.+++..+.+.+++++......
T Consensus 332 l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~-------~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~ 404 (570)
T 2z63_A 332 FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT-------SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 404 (570)
T ss_dssp EESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCS-------CCCEEECCSCSEEEEEEEEETCTTCCEEECT
T ss_pred CcCCccccccccccCCCCCEEeCcCCccCccccccccccccC-------ccCEEECCCCccccccccccccCCCCEEEcc
Confidence 23455555555555555443 44455554 6666666666666554445555555544333
Q ss_pred ccceEEEEcCCc-ccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCc-ccCCcccCCCCCCCeeeCCCC
Q 040109 375 FDKITVTWKGGQ-YEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLT-GQITPRIGQLKSLDFLDLSIN 452 (598)
Q Consensus 375 ~~~~~~~~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N 452 (598)
.+.+. +.. ...+..+++|++|++++|.+.+..|..+..+++|++|++++|+++ +.+|..+..+++|++|++++|
T Consensus 405 ~n~l~----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n 480 (570)
T 2z63_A 405 HSNLK----QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480 (570)
T ss_dssp TSEEE----SCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred CCccc----cccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC
Confidence 33221 111 134567899999999999999889999999999999999999998 578999999999999999999
Q ss_pred ccCCCCcccccCCCCCCEEeCCCCcceecCCCC-CccCccCCCccCCCCCCCCCCCC
Q 040109 453 HFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKG-TQLQRFGASTYAGNPELCGLPLP 508 (598)
Q Consensus 453 ~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~gnp~lC~~~~~ 508 (598)
++++..|..+.++++|++|++++|++++..|.. ..+++++.+.+.+||+.|+|+..
T Consensus 481 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 481 QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred ccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 999888999999999999999999999766653 56788899999999999998753
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.1e-41 Score=368.86 Aligned_cols=401 Identities=22% Similarity=0.215 Sum_probs=270.9
Q ss_pred CCCccCeeeCCC-----------CCcEEEEEcCCCCCCCCCCCceecCccccCCCCCCEEECcCCCCCCCCcchhcCCCC
Q 040109 69 CCKWRGVRCSNK-----------TGHVLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLS 137 (598)
Q Consensus 69 ~c~w~gv~C~~~-----------~~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~ 137 (598)
.|.|.|+ |+.. ...++.+++++ +.+++..|..|.++++|++|++++|.+++. .|..|..++
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~ 74 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSF------NKITYIGHGDLRACANLQVLILKSSRINTI-EGDAFYSLG 74 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCS------SCCCEECSSTTSSCTTCCEEECTTSCCCEE-CTTTTTTCT
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcC------CccCccChhhhhcCCcccEEECCCCCcCcc-Chhhccccc
Confidence 4889888 7632 23688999998 789888888999999999999999999975 678899999
Q ss_pred CCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCc-CCCCCchhHhhcCCCCCcE
Q 040109 138 KLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCK-LSKFSNWFQVLSNLRSLTT 216 (598)
Q Consensus 138 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~l~~l~~L~~ 216 (598)
+|++|++++|.+++..|..|+++++|++|++++|.+.....+..+.++++|++|++++|. +..++. ..+..+++|++
T Consensus 75 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~--~~~~~l~~L~~ 152 (549)
T 2z81_A 75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR--IDFAGLTSLNE 152 (549)
T ss_dssp TCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT--TTTTTCCEEEE
T ss_pred cCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCH--hhhhcccccCe
Confidence 999999999999988888899999999999999998544455679999999999999998 455432 57889999999
Q ss_pred EeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhh-hhcCccCccEEEccCCccccc---------------
Q 040109 217 LYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWL-LNVSSNLVDHIDLGSNRLHGS--------------- 280 (598)
Q Consensus 217 L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l-~~~~~~~L~~L~L~~n~l~~~--------------- 280 (598)
|++++|.+++..+..+... ++|++|++++|.+. .++..+ ..+++ |++|++++|.+++.
T Consensus 153 L~L~~n~l~~~~~~~l~~l---~~L~~L~l~~n~~~-~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~L~ 226 (549)
T 2z81_A 153 LEIKALSLRNYQSQSLKSI---RDIHHLTLHLSESA-FLLEIFADILSS--VRYLELRDTNLARFQFSPLPVDEVSSPMK 226 (549)
T ss_dssp EEEEETTCCEECTTTTTTC---SEEEEEEEECSBST-THHHHHHHSTTT--BSEEEEESCBCTTCCCCCCSSCCCCCCCC
T ss_pred eeccCCcccccChhhhhcc---ccCceEecccCccc-ccchhhHhhccc--ccEEEccCCccccccccccchhhhhhccc
Confidence 9999999988665433322 34444444444332 122211 12233 33333333333321
Q ss_pred ------------cch---------------------------------------------------------------hh
Q 040109 281 ------------IPV---------------------------------------------------------------AF 285 (598)
Q Consensus 281 ------------~p~---------------------------------------------------------------~l 285 (598)
.+. .+
T Consensus 227 ~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~ 306 (549)
T 2z81_A 227 KLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY 306 (549)
T ss_dssp EEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHH
T ss_pred ceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhh
Confidence 000 01
Q ss_pred cCCCCccEEeeccCCCCCcchhh-cCCCCCcEEEcccCcCccchhhh---hhhcCCCCCCCCCCCEEEccCccccccCC-
Q 040109 286 GHMASLRYLGLLSNRLREVPKFL-GNMSSLKMLVLSYNELRGELSEF---IQNVSSGSTKNSSLEWLYLASNEITGTIP- 360 (598)
Q Consensus 286 ~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~L~Ls~n~l~~~~~~~---l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p- 360 (598)
...++|++|++++|.++.+|..+ ..+++|++|++++|++.+..|.. +..++ +|+.|++++|++++..+
T Consensus 307 ~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~-------~L~~L~Ls~N~l~~~~~~ 379 (549)
T 2z81_A 307 SLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP-------SLQTLVLSQNHLRSMQKT 379 (549)
T ss_dssp HHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSST-------TCCEEECTTSCCCCHHHH
T ss_pred hhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccc-------cCcEEEccCCcccccccc
Confidence 11234555666666665565544 35666666666666666554432 33333 66666666666653211
Q ss_pred --CCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCccc
Q 040109 361 --NLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRI 438 (598)
Q Consensus 361 --~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 438 (598)
.+..+++|.......+.+. ..+..+..+++|++|++++|+++ .+|..+ .++|++|++++|++++.+
T Consensus 380 ~~~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~---- 447 (549)
T 2z81_A 380 GEILLTLKNLTSLDISRNTFH-----PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS---- 447 (549)
T ss_dssp HHHGGGCTTCCEEECTTCCCC-----CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----
T ss_pred hhhhhcCCCCCEEECCCCCCc-----cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----
Confidence 1333344433332222221 12233344566777777777666 334333 246777777777776432
Q ss_pred CCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcceecCCCC-CccCccCCCccCCCCCCCCCC
Q 040109 439 GQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKG-TQLQRFGASTYAGNPELCGLP 506 (598)
Q Consensus 439 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~gnp~lC~~~ 506 (598)
..+++|++|+|++|+++ .+|. ...+++|++|++++|++++..|.. ..++++..+++++||+.|+|+
T Consensus 448 ~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 448 LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 47889999999999998 6776 567999999999999999776653 567888999999999999987
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.3e-40 Score=365.12 Aligned_cols=357 Identities=23% Similarity=0.203 Sum_probs=246.5
Q ss_pred ecCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccc
Q 040109 103 TINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWL 182 (598)
Q Consensus 103 ~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l 182 (598)
.+|..+.. ++++|++++|.+++. .|..|+.+++|++|+|++|.+++..|..|+++++|++|++++|.+ ....+..+
T Consensus 26 ~iP~~l~~--~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~ 101 (606)
T 3t6q_A 26 EIPGTLPN--STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL-IFMAETAL 101 (606)
T ss_dssp SCCTTSCT--TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-SEECTTTT
T ss_pred cCcCCCCC--cCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc-cccChhhh
Confidence 45555543 789999999999975 688999999999999999999988899999999999999999997 44556679
Q ss_pred cCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhc
Q 040109 183 SYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNV 262 (598)
Q Consensus 183 ~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 262 (598)
.++++|++|++++|.+++++ +..+..+++|++|++++|.+.+.....+.. . ++|++|++++|.+++..+..+..+
T Consensus 102 ~~l~~L~~L~L~~n~i~~l~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l-~~L~~L~L~~n~l~~~~~~~~~~l 176 (606)
T 3t6q_A 102 SGPKALKHLFFIQTGISSID--FIPLHNQKTLESLYLGSNHISSIKLPKGFP--T-EKLKVLDFQNNAIHYLSKEDMSSL 176 (606)
T ss_dssp SSCTTCCEEECTTSCCSCGG--GSCCTTCTTCCEEECCSSCCCCCCCCTTCC--C-TTCCEEECCSSCCCEECHHHHHTT
T ss_pred cccccccEeeccccCcccCC--cchhccCCcccEEECCCCcccccCcccccC--C-cccCEEEcccCcccccChhhhhhh
Confidence 99999999999999999863 356899999999999999999865432333 2 788888888888886666666665
Q ss_pred CccCcc--EEEccCC-----------------------------------------------------------------
Q 040109 263 SSNLVD--HIDLGSN----------------------------------------------------------------- 275 (598)
Q Consensus 263 ~~~~L~--~L~L~~n----------------------------------------------------------------- 275 (598)
+. ++ .|++++|
T Consensus 177 ~~--L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~ 254 (606)
T 3t6q_A 177 QQ--ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM 254 (606)
T ss_dssp TT--CCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGS
T ss_pred cc--cceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcC
Confidence 55 44 4444444
Q ss_pred ----------ccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCC
Q 040109 276 ----------RLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSL 345 (598)
Q Consensus 276 ----------~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L 345 (598)
.+++..+..|..+++|++|++++|.++.+|..+..+++|++|++++|.+.+..|..+..++ +|
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-------~L 327 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFP-------SL 327 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT-------TC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccC-------cC
Confidence 4444444557778899999999999999998899999999999999999988888888877 78
Q ss_pred CEEEccCccccccCCC--CCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEE
Q 040109 346 EWLYLASNEITGTIPN--LGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVAL 423 (598)
Q Consensus 346 ~~L~Ls~N~l~~~~p~--l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 423 (598)
+.|++++|.+.+.+|. +.+++++.......+.+.... ..+..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 328 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 405 (606)
T 3t6q_A 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD--CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405 (606)
T ss_dssp SEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE--ESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEE
T ss_pred CEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc--CcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeE
Confidence 8888888877766654 556666655433333322111 001122334444455555544444444444444444444
Q ss_pred ECcCCcCcccCCcc-cCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcce
Q 040109 424 NLSNNNLTGQITPR-IGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFS 479 (598)
Q Consensus 424 ~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 479 (598)
++++|++++..|.. +..+++|++|++++|.+++..|..+.++++|++|++++|++.
T Consensus 406 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 462 (606)
T 3t6q_A 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462 (606)
T ss_dssp ECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCG
T ss_pred ECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCC
Confidence 44444444333322 444444444444444444444444444444444444444443
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-40 Score=354.63 Aligned_cols=375 Identities=24% Similarity=0.233 Sum_probs=246.9
Q ss_pred CCCCCccC--eeeCCCC--------CcEEEEEcCCCCCCCCCCCceecCccccCCCCCCEEECcCCCCCCCCcchhcCCC
Q 040109 67 RNCCKWRG--VRCSNKT--------GHVLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSL 136 (598)
Q Consensus 67 ~~~c~w~g--v~C~~~~--------~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l 136 (598)
...|.|.+ +.|+... .+++.|++++ +.+++..|..|.++++|++|++++|.+.+...+..|..+
T Consensus 5 ~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~------n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l 78 (455)
T 3v47_A 5 TSECSVIGYNAICINRGLHQVPELPAHVNYVDLSL------NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGL 78 (455)
T ss_dssp --CCEEETTEEECCSSCCSSCCCCCTTCCEEECCS------SCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTC
T ss_pred cceeEEEccccCcCCCCcccCCCCCCccCEEEecC------CccCcCChhHhccCccccEEECcCCcccceECccccccc
Confidence 34566665 7776422 3567777777 677776677777777777777777777643124567777
Q ss_pred CCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCC-CCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCc
Q 040109 137 SKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSS-GNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLT 215 (598)
Q Consensus 137 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~ 215 (598)
++|++|+|++|.+++..|..|+++++|++|++++|.+... .....+.++++|++|++++|.+++... ...+..+++|+
T Consensus 79 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~ 157 (455)
T 3v47_A 79 SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP-ASFFLNMRRFH 157 (455)
T ss_dssp TTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCC-CGGGGGCTTCC
T ss_pred ccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCc-ccccCCCCccc
Confidence 7777777777777766677777777777777777776211 111236777777777777777776521 02266777777
Q ss_pred EEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhh--------hhcCccCccEEEccCCccccccchhhcC
Q 040109 216 TLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWL--------LNVSSNLVDHIDLGSNRLHGSIPVAFGH 287 (598)
Q Consensus 216 ~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l--------~~~~~~~L~~L~L~~n~l~~~~p~~l~~ 287 (598)
+|++++|.+.+..+..+..... .+|+.|++++|.+.+..+..+ ...++ |++|++++|.+++..|..+..
T Consensus 158 ~L~L~~n~l~~~~~~~l~~l~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~--L~~L~Ls~n~l~~~~~~~~~~ 234 (455)
T 3v47_A 158 VLDLTFNKVKSICEEDLLNFQG-KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS--ITTLDLSGNGFKESMAKRFFD 234 (455)
T ss_dssp EEECTTCCBSCCCTTTSGGGTT-CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCE--EEEEECTTSCCCHHHHHHHHH
T ss_pred EEeCCCCcccccChhhhhcccc-ccccccccccCcccccchhhccccccccccccce--eeeEecCCCcccccchhhhhc
Confidence 7777777777766654544433 567777777777765443322 23345 777777777777766666544
Q ss_pred C---CCccEEeeccCCCCCcc-----------hhhc--CCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEcc
Q 040109 288 M---ASLRYLGLLSNRLREVP-----------KFLG--NMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLA 351 (598)
Q Consensus 288 l---~~L~~L~Ls~n~l~~lp-----------~~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls 351 (598)
. ++|+.|++++|...+.. ..+. ..++|+.|++++|.+.+..|..+..++ +|+.|+++
T Consensus 235 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-------~L~~L~Ls 307 (455)
T 3v47_A 235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT-------DLEQLTLA 307 (455)
T ss_dssp HTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT-------TCCEEECT
T ss_pred cccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCC-------CCCEEECC
Confidence 3 67777777776543310 1111 125677777777777777777666666 67777777
Q ss_pred CccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCc
Q 040109 352 SNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLT 431 (598)
Q Consensus 352 ~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 431 (598)
+|.+++..|. .+..+++|++|+|++|.+++..|..+..+++|++|+|++|+++
T Consensus 308 ~n~l~~~~~~---------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 360 (455)
T 3v47_A 308 QNEINKIDDN---------------------------AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360 (455)
T ss_dssp TSCCCEECTT---------------------------TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCC
T ss_pred CCcccccChh---------------------------HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCccc
Confidence 7777654432 2234556777777777777666777777777777777777777
Q ss_pred ccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcceecCCCC
Q 040109 432 GQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKG 485 (598)
Q Consensus 432 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 485 (598)
+..|..+..+++|++|++++|++++..+..+..+++|++|++++|+++|.+|..
T Consensus 361 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 361 ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred ccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 666777777777777777777777655556677777777777777777777654
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.5e-39 Score=351.89 Aligned_cols=394 Identities=19% Similarity=0.235 Sum_probs=250.5
Q ss_pred CcEEEEEcCCCCCCCCCCCceecCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCC
Q 040109 82 GHVLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLS 161 (598)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 161 (598)
.+++.+++++ +.+++..|..|.++++|++|++++|.+++. .|..|+.+++|++|+|++|.++ .+|.. .++
T Consensus 21 ~~L~~L~Ls~------n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~ 90 (520)
T 2z7x_B 21 QKTTILNISQ------NYISELWTSDILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNKLV-KISCH--PTV 90 (520)
T ss_dssp TTCSEEECCS------SCCCCCCHHHHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSCCC-EEECC--CCC
T ss_pred ccccEEECCC------CcccccChhhccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCcee-ecCcc--ccC
Confidence 4566677766 566655556677777777777777777653 5666777777777777777776 45544 667
Q ss_pred CCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCC--cEEeccCcCC--CCCCCChhhhcc-
Q 040109 162 RLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSL--TTLYLGHCDL--PPISTPSLLHLN- 236 (598)
Q Consensus 162 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L--~~L~l~~n~l--~~~~~~~~~~~~- 236 (598)
+|++|++++|.+.....+..++++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..+..+..+.
T Consensus 91 ~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~ 165 (520)
T 2z7x_B 91 NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT 165 (520)
T ss_dssp CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG-----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCE
T ss_pred CccEEeccCCccccccchhhhccCCcceEEEecCcccch-----hhccccccceeeEEEeeccccccccccccccccccc
Confidence 777777777766333344566777777777777776654 234555555 7777777766 443333222211
Q ss_pred ----------------------ccCCccEEEccCCC-------CCCCcchhhhhcCc-----------------------
Q 040109 237 ----------------------YSKSLEVIDLSNNY-------LTNSIYPWLLNVSS----------------------- 264 (598)
Q Consensus 237 ----------------------~~~~L~~L~Ls~n~-------l~~~~~~~l~~~~~----------------------- 264 (598)
.+++|+.|++++|. +.+.++ .+..++.
T Consensus 166 ~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~ 244 (520)
T 2z7x_B 166 ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLV 244 (520)
T ss_dssp EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHH
T ss_pred ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHh
Confidence 01333344433332 111111 1122221
Q ss_pred --cCccEEEccCCccccccchhh-----cCCCCccEEeeccCCCCCcc-hhhcCC---CCCcEEEcccCcCccchhhhhh
Q 040109 265 --NLVDHIDLGSNRLHGSIPVAF-----GHMASLRYLGLLSNRLREVP-KFLGNM---SSLKMLVLSYNELRGELSEFIQ 333 (598)
Q Consensus 265 --~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~Ls~n~l~~lp-~~l~~l---~~L~~L~Ls~n~l~~~~~~~l~ 333 (598)
..|++|++++|.+++.+|..+ ..+++|+.+++++|.+ .+| ..+..+ ++|+.|++++|.+..... ..
T Consensus 245 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~ 321 (520)
T 2z7x_B 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--PS 321 (520)
T ss_dssp HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC--CS
T ss_pred hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccc--hh
Confidence 016666666666666666655 5666666666666665 444 222222 344555555554432210 02
Q ss_pred hcCCCCCCCCCCCEEEccCccccccCC-CCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCch
Q 040109 334 NVSSGSTKNSSLEWLYLASNEITGTIP-NLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPE 412 (598)
Q Consensus 334 ~l~~g~~~~~~L~~L~Ls~N~l~~~~p-~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 412 (598)
. +++|++|++++|.+++.+| .+.+++++.......+.+.. -+..+..++.+++|++|++++|.+++.+|.
T Consensus 322 ~-------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~ 392 (520)
T 2z7x_B 322 K-------ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE--LSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392 (520)
T ss_dssp S-------CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCB--HHHHHHHHTTCTTCCEEECCSSCCBCCGGG
T ss_pred h-------CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCc--cccchHHHhhCCCCCEEECCCCcCCccccc
Confidence 2 2367777777777776444 35566665554433333210 011223456788999999999999975776
Q ss_pred h-hhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcceecCCCC--CccC
Q 040109 413 E-IMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKG--TQLQ 489 (598)
Q Consensus 413 ~-l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~--~~~~ 489 (598)
. +..+++|++|++++|++++.+|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. ..++
T Consensus 393 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~ 468 (520)
T 2z7x_B 393 GDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLT 468 (520)
T ss_dssp CSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCT
T ss_pred chhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCC
Confidence 4 78899999999999999988888775 79999999999998 88888889999999999999998 57764 4577
Q ss_pred ccCCCccCCCCCCCCCCC
Q 040109 490 RFGASTYAGNPELCGLPL 507 (598)
Q Consensus 490 ~l~~~~~~gnp~lC~~~~ 507 (598)
++..+++.+||+.|+|++
T Consensus 469 ~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 469 SLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp TCCEEECCSSCBCCCHHH
T ss_pred cccEEECcCCCCcccCCc
Confidence 888999999999999874
No 15
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5e-39 Score=356.19 Aligned_cols=404 Identities=22% Similarity=0.184 Sum_probs=305.5
Q ss_pred CcEEEEEcCCCCCCCCCCCceecCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCC
Q 040109 82 GHVLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLS 161 (598)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 161 (598)
..++.|||++ +.+++..+.+|.++++|++|+|++|.|++. .|..|.++++|++|+|++|++++..+..|.+++
T Consensus 52 ~~~~~LdLs~------N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 52 FSTKNLDLSF------NPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp TTCCEEECTT------SCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred cCCCEEEeeC------CCCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence 3588999998 899887778899999999999999999974 566899999999999999999977778899999
Q ss_pred CCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhcccc-C-
Q 040109 162 RLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYS-K- 239 (598)
Q Consensus 162 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~-~- 239 (598)
+|++|++++|++ .......|+++++|++|++++|.++.++ .+..+..+++|++|++++|++++..+..+..+... .
T Consensus 125 ~L~~L~Ls~N~l-~~l~~~~~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~ 202 (635)
T 4g8a_A 125 SLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 202 (635)
T ss_dssp TCCEEECTTSCC-CCSTTCCCTTCTTCCEEECCSSCCCCCC-CCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CCCEEECCCCcC-CCCChhhhhcCcccCeeccccCccccCC-CchhhccchhhhhhcccCccccccccccccchhhhhhh
Confidence 999999999998 4444556999999999999999998763 45778899999999999999987765433322110 0
Q ss_pred ----------------------CccEEEccCCCCCCCc------------------------------------------
Q 040109 240 ----------------------SLEVIDLSNNYLTNSI------------------------------------------ 255 (598)
Q Consensus 240 ----------------------~L~~L~Ls~n~l~~~~------------------------------------------ 255 (598)
.++.+++.+|.....+
T Consensus 203 ~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~ 282 (635)
T 4g8a_A 203 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 282 (635)
T ss_dssp CCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSE
T ss_pred hhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchh
Confidence 1122222222110000
Q ss_pred --------------------------------------chhhhhcCccCccEEEccCCccccccch--------------
Q 040109 256 --------------------------------------YPWLLNVSSNLVDHIDLGSNRLHGSIPV-------------- 283 (598)
Q Consensus 256 --------------------------------------~~~l~~~~~~~L~~L~L~~n~l~~~~p~-------------- 283 (598)
...+..... ++.|++.+|.+.+..+.
T Consensus 283 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~ 360 (635)
T 4g8a_A 283 IEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG--WQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 360 (635)
T ss_dssp EEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCC--CSEEEEESCEESSCCCCBCTTCCEEEEESCC
T ss_pred hhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchh--hhhhhcccccccCcCcccchhhhhccccccc
Confidence 000111122 66777777765433221
Q ss_pred -----hhcCCCCccEEeeccCCCCC---cchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccc
Q 040109 284 -----AFGHMASLRYLGLLSNRLRE---VPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEI 355 (598)
Q Consensus 284 -----~l~~l~~L~~L~Ls~n~l~~---lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l 355 (598)
....+++|+.|++++|.+.. .+..+..+.+|+.++++.|......+ .+..+. +|+.+++++|..
T Consensus 361 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~-~~~~l~-------~L~~l~l~~~~~ 432 (635)
T 4g8a_A 361 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSS-NFLGLE-------QLEHLDFQHSNL 432 (635)
T ss_dssp SCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECS-CCTTCT-------TCCEEECTTSEE
T ss_pred CCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccc-cccccc-------cccchhhhhccc
Confidence 23357889999999999875 55677788999999999988765433 344455 788888888877
Q ss_pred cccCCC--CCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcC-CCcCchhhhcccCCcEEECcCCcCcc
Q 040109 356 TGTIPN--LGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKL-GGEVPEEIMDLVGLVALNLSNNNLTG 432 (598)
Q Consensus 356 ~~~~p~--l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~p~~l~~l~~L~~L~Ls~N~l~~ 432 (598)
....+. +.+++.+.......+.+. +........++.++.|++++|++ .+..|..|..+++|++|+|++|++++
T Consensus 433 ~~~~~~~~~~~l~~l~~l~ls~n~l~----~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~ 508 (635)
T 4g8a_A 433 KQMSEFSVFLSLRNLIYLDISHTHTR----VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 508 (635)
T ss_dssp ESTTSSCTTTTCTTCCEEECTTSCCE----ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred cccccccccccccccccccccccccc----cccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCC
Confidence 655432 344444443333333332 22234456688999999999975 44678889999999999999999999
Q ss_pred cCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcceecCCCCC-cc-CccCCCccCCCCCCCCCCCC
Q 040109 433 QITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGT-QL-QRFGASTYAGNPELCGLPLP 508 (598)
Q Consensus 433 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~-~~-~~l~~~~~~gnp~lC~~~~~ 508 (598)
..|..|.++++|++|+|++|++++..|..|.++++|++|++++|++++..|... .+ .+++.+++++|||.|+|.+.
T Consensus 509 l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~ 586 (635)
T 4g8a_A 509 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 586 (635)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGH
T ss_pred cChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcH
Confidence 999999999999999999999999889999999999999999999998877653 33 67889999999999999753
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.9e-39 Score=354.46 Aligned_cols=380 Identities=20% Similarity=0.143 Sum_probs=294.7
Q ss_pred CcEEEEEcCCCCCCCCCCCceecCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCC
Q 040109 82 GHVLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLS 161 (598)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 161 (598)
.+++.+++++ +.+++..|.+|.++++|++|+|++|.+++. .|..|+.+++|++|++++|.+++..+..+++++
T Consensus 56 ~~L~~L~Ls~------n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 128 (606)
T 3vq2_A 56 SELQWLDLSR------CEIETIEDKAWHGLHHLSNLILTGNPIQSF-SPGSFSGLTSLENLVAVETKLASLESFPIGQLI 128 (606)
T ss_dssp TTCCEEECTT------CCCCEECTTTTTTCTTCCEEECTTCCCCCC-CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT
T ss_pred ccCcEEeCCC------CcccccCHHHhhchhhcCEeECCCCccccc-ChhhcCCcccCCEEEccCCccccccccccCCCC
Confidence 5688999998 788888888999999999999999999975 789999999999999999999987778899999
Q ss_pred CCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCC---------------------------CC
Q 040109 162 RLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLR---------------------------SL 214 (598)
Q Consensus 162 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~---------------------------~L 214 (598)
+|++|++++|.+.....+..+.++++|++|++++|.+++++. ..+..++ +|
T Consensus 129 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L 206 (606)
T 3vq2_A 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV--NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKL 206 (606)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT--TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEE
T ss_pred CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh--hhhhhhhccccccceeeccCCCcceeCcccccCcee
Confidence 999999999998444557789999999999999999887532 2232222 44
Q ss_pred cEEeccCcCCCCC----------------------------------------------------------CCC------
Q 040109 215 TTLYLGHCDLPPI----------------------------------------------------------STP------ 230 (598)
Q Consensus 215 ~~L~l~~n~l~~~----------------------------------------------------------~~~------ 230 (598)
++|++++|.+.+. .+.
T Consensus 207 ~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~ 286 (606)
T 3vq2_A 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLAN 286 (606)
T ss_dssp EEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTT
T ss_pred eeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCC
Confidence 5555555443200 000
Q ss_pred ------------hhhhccccCCccEEEccCCCCCCCcch--------------------hhhhcCccCccEEEccCCccc
Q 040109 231 ------------SLLHLNYSKSLEVIDLSNNYLTNSIYP--------------------WLLNVSSNLVDHIDLGSNRLH 278 (598)
Q Consensus 231 ------------~~~~~~~~~~L~~L~Ls~n~l~~~~~~--------------------~l~~~~~~~L~~L~L~~n~l~ 278 (598)
.+......++|++|++++|.+ +.+|. .+..+++ |++|++++|.++
T Consensus 287 L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~--L~~L~ls~n~l~ 363 (606)
T 3vq2_A 287 VSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPS--LSYLDLSRNALS 363 (606)
T ss_dssp CSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTT--CCEEECCSSCEE
T ss_pred CCEEEecCccchhhhhccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCC--CCEEECcCCccC
Confidence 000000113555666666655 33432 1223344 666777777766
Q ss_pred cc--cchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchh-hhhhhcCCCCCCCCCCCEEEccCccc
Q 040109 279 GS--IPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELS-EFIQNVSSGSTKNSSLEWLYLASNEI 355 (598)
Q Consensus 279 ~~--~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~g~~~~~~L~~L~Ls~N~l 355 (598)
+. .|..+..+++|++|++++|.++++|..+..+++|+.|++++|++.+..| ..+..++ +|+.|++++|.+
T Consensus 364 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-------~L~~L~l~~n~l 436 (606)
T 3vq2_A 364 FSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE-------KLLYLDISYTNT 436 (606)
T ss_dssp EEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT-------TCCEEECTTSCC
T ss_pred CCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccc-------cCCEEECcCCCC
Confidence 54 3677778888888888888888777778888888888888888888776 5677766 999999999999
Q ss_pred cccCCC-CCCCCcCccccccccceEEEEcC-CcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCccc
Q 040109 356 TGTIPN-LGGFPGMLMPLIYFDKITVTWKG-GQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQ 433 (598)
Q Consensus 356 ~~~~p~-l~~l~~l~~~~~~~~~~~~~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 433 (598)
++..|. +.+++++.......+.+ .+ ..+..++.+++|+.|++++|++++..|..+.++++|++|++++|++++.
T Consensus 437 ~~~~~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 512 (606)
T 3vq2_A 437 KIDFDGIFLGLTSLNTLKMAGNSF----KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL 512 (606)
T ss_dssp EECCTTTTTTCTTCCEEECTTCEE----GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCE
T ss_pred CccchhhhcCCCCCCEEECCCCcC----CCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCc
Confidence 987765 67777777655444433 22 2345667889999999999999999999999999999999999999998
Q ss_pred CCcccCCCCCCCeeeCCCCccCCCCcccccCCC-CCCEEeCCCCcceecCCCC
Q 040109 434 ITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLR-LLSVMDLSYNNFSGKIPKG 485 (598)
Q Consensus 434 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~~~~p~~ 485 (598)
+|..+..+++|++|++++|+++ .+|..+..++ +|++|++++|++.+.++..
T Consensus 513 ~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 513 DSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp EGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred CHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 9999999999999999999998 7888899997 5999999999999887764
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.6e-39 Score=341.41 Aligned_cols=358 Identities=23% Similarity=0.213 Sum_probs=299.8
Q ss_pred CCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCC-ccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCCE
Q 040109 112 QHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPI-PHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRY 190 (598)
Q Consensus 112 ~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~ 190 (598)
++|++|+|++|.+++. .|..|..+++|++|++++|.+.+.+ +..|.++++|++|++++|.+ ....+..+.++++|++
T Consensus 30 ~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF-LQLETGAFNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSCCCEE-CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT-CEECTTTTTTCTTCCE
T ss_pred CccCEEEecCCccCcC-ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc-CccChhhccCcccCCE
Confidence 7899999999999975 6889999999999999999998555 56799999999999999997 4445667999999999
Q ss_pred EEcCCCcCCCCCchhHh--hcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCcc
Q 040109 191 LDLGDCKLSKFSNWFQV--LSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVD 268 (598)
Q Consensus 191 L~L~~n~l~~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~ 268 (598)
|++++|.+++. .+.. +..+++|++|++++|.+++..+.. .+..+++|++|++++|.+++..+..+..+....++
T Consensus 108 L~L~~n~l~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 108 LTLTQCNLDGA--VLSGNFFKPLTSLEMLVLRDNNIKKIQPAS--FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183 (455)
T ss_dssp EECTTSCCBTH--HHHSSTTTTCTTCCEEECCSSBCCSCCCCG--GGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred EeCCCCCCCcc--ccCcccccCcccCCEEECCCCccCccCccc--ccCCCCcccEEeCCCCcccccChhhhhcccccccc
Confidence 99999999873 2333 889999999999999999887643 12223899999999999999888888887444499
Q ss_pred EEEccCCccccccchh--------hcCCCCccEEeeccCCCCC-cchhhcC---CCCCcEEEcccCcCccchh-------
Q 040109 269 HIDLGSNRLHGSIPVA--------FGHMASLRYLGLLSNRLRE-VPKFLGN---MSSLKMLVLSYNELRGELS------- 329 (598)
Q Consensus 269 ~L~L~~n~l~~~~p~~--------l~~l~~L~~L~Ls~n~l~~-lp~~l~~---l~~L~~L~Ls~n~l~~~~~------- 329 (598)
.|++++|.+.+..+.. +..+++|++|++++|.+++ .|..+.. .++|+.|++++|...+...
T Consensus 184 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 263 (455)
T 3v47_A 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263 (455)
T ss_dssp EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCC
T ss_pred ccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhcc
Confidence 9999999998655443 3366899999999999987 6665544 3899999999987654321
Q ss_pred ---hhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcC
Q 040109 330 ---EFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKL 406 (598)
Q Consensus 330 ---~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l 406 (598)
..+..+ ..++|+.|++++|.+++.+|. .++.+++|++|++++|++
T Consensus 264 ~~~~~~~~~-----~~~~L~~L~l~~n~l~~~~~~---------------------------~~~~l~~L~~L~Ls~n~l 311 (455)
T 3v47_A 264 PDNFTFKGL-----EASGVKTCDLSKSKIFALLKS---------------------------VFSHFTDLEQLTLAQNEI 311 (455)
T ss_dssp CCTTTTGGG-----TTSCCCEEECCSSCCCEECTT---------------------------TTTTCTTCCEEECTTSCC
T ss_pred Ccccccccc-----cccCceEEEecCccccccchh---------------------------hcccCCCCCEEECCCCcc
Confidence 111111 225899999999999876553 345577899999999999
Q ss_pred CCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcceecCCCC-
Q 040109 407 GGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKG- 485 (598)
Q Consensus 407 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~- 485 (598)
++..|..|..+++|++|++++|++++..|..+..+++|++|+|++|++++..|..+.++++|++|++++|++++..+..
T Consensus 312 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 391 (455)
T 3v47_A 312 NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF 391 (455)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred cccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHh
Confidence 9888999999999999999999999888999999999999999999999888999999999999999999999644433
Q ss_pred CccCccCCCccCCCCCCCCCCC
Q 040109 486 TQLQRFGASTYAGNPELCGLPL 507 (598)
Q Consensus 486 ~~~~~l~~~~~~gnp~lC~~~~ 507 (598)
..+++++.+++++||+.|+||.
T Consensus 392 ~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 392 DRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp TTCTTCCEEECCSSCBCCCTTT
T ss_pred ccCCcccEEEccCCCcccCCCc
Confidence 4678899999999999999983
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.3e-39 Score=359.77 Aligned_cols=356 Identities=19% Similarity=0.208 Sum_probs=284.8
Q ss_pred CCCCceecCccccCCCCCCEEECcCCCCCCCC-----------------cchhcC--CCCCCCEEECCCCCCCCCCcccc
Q 040109 97 VDALKGTINPSLLKLQHLTYLDLSWNNFSGSP-----------------IPEFIG--SLSKLSELALSSAQLAGPIPHQL 157 (598)
Q Consensus 97 ~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~-----------------~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~l 157 (598)
.+.++| +|+.++++++|++|+|++|.+++ . +|..++ ++++|++|+|++|.+.+.+|..|
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l 269 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVA-ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCG-GGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCcccc-ccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH
Confidence 457778 99999999999999999999986 2 788888 99999999999999999999999
Q ss_pred CCCCCCCEEEccCCC-CCCC-CCcccccCC------CCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCC
Q 040109 158 GNLSRLQVLDLRFNN-LFSS-GNLDWLSYL------SSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPIST 229 (598)
Q Consensus 158 ~~l~~L~~L~Ls~n~-l~~~-~~~~~l~~l------~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 229 (598)
+++++|++|++++|+ + .. ..+..+..+ ++|++|++++|.++.+|. ...+..+++|++|++++|.+++..+
T Consensus 270 ~~l~~L~~L~Ls~n~~l-~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~-~~~l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 270 KALPEMQLINVACNRGI-SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPV-ETSLQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp TTCSSCCEEECTTCTTS-CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCC-HHHHTTCTTCCEEECCSCCCEEECC
T ss_pred hcCCCCCEEECcCCCCC-ccccchHHHHhhhccccCCCCCEEECCCCcCCccCc-hhhhccCCCCCEEeCcCCcCccchh
Confidence 999999999999998 5 32 344445554 899999999999986432 1278899999999999999985554
Q ss_pred ChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCC--CccEEeeccCCCCC-cch
Q 040109 230 PSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMA--SLRYLGLLSNRLRE-VPK 306 (598)
Q Consensus 230 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~--~L~~L~Ls~n~l~~-lp~ 306 (598)
.+... ++|++|++++|.++ .+|..+..++.. |++|++++|.++ .+|..+..++ +|++|++++|.+++ +|.
T Consensus 348 -~~~~l---~~L~~L~L~~N~l~-~lp~~l~~l~~~-L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 348 -AFGSE---IKLASLNLAYNQIT-EIPANFCGFTEQ-VENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420 (636)
T ss_dssp -CCEEE---EEESEEECCSSEEE-ECCTTSEEECTT-CCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred -hhCCC---CCCCEEECCCCccc-cccHhhhhhccc-CcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchh
Confidence 33333 78899999999888 777777766532 888999999888 7777776654 88999999998887 677
Q ss_pred hhc-------CCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCC-CC--------CCCcCcc
Q 040109 307 FLG-------NMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPN-LG--------GFPGMLM 370 (598)
Q Consensus 307 ~l~-------~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~-l~--------~l~~l~~ 370 (598)
.+. .+++|++|++++|.+++.++..+..++ +|+.|++++|.++ .+|. .. +++++..
T Consensus 421 ~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~-------~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~ 492 (636)
T 4eco_A 421 NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS-------PLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTS 492 (636)
T ss_dssp SSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTC-------CCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCE
T ss_pred hhcccccccccCCCCCEEECcCCccCcCCHHHHccCC-------CCCEEECCCCCCC-CcCHHHhccccccccccCCccE
Confidence 676 677889999999988866666666666 8889999998888 5553 11 1224444
Q ss_pred ccccccceEEEEcCCcccccc--cccccceEeccCCcCCCcCchhhhcccCCcEEEC------cCCcCcccCCcccCCCC
Q 040109 371 PLIYFDKITVTWKGGQYEYKS--ILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNL------SNNNLTGQITPRIGQLK 442 (598)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L------s~N~l~~~~p~~l~~l~ 442 (598)
.....+.+. .++..+. .+++|+.|+|++|++++ +|..+.++++|+.|+| ++|++.+.+|..+..++
T Consensus 493 L~Ls~N~l~-----~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~ 566 (636)
T 4eco_A 493 IDLRFNKLT-----KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566 (636)
T ss_dssp EECCSSCCC-----BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCS
T ss_pred EECcCCcCC-----ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCC
Confidence 443333332 2333343 78999999999999997 8999999999999999 56888999999999999
Q ss_pred CCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCccee
Q 040109 443 SLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFSG 480 (598)
Q Consensus 443 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 480 (598)
+|++|+|++|++ +.+|..+. ++|+.|++++|++..
T Consensus 567 ~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 567 SLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp SCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred CCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 999999999999 68888766 899999999999874
No 19
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.7e-38 Score=343.94 Aligned_cols=162 Identities=22% Similarity=0.291 Sum_probs=120.6
Q ss_pred CCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccc
Q 040109 310 NMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEY 389 (598)
Q Consensus 310 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~ 389 (598)
.+++|++|++++|.+++..|..+..++ +|+.|++++|++++. +..+..
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~-------~L~~L~L~~N~l~~~-------------------------~~~~~~ 398 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLK-------RLQTLILQRNGLKNF-------------------------FKVALM 398 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCS-------SCCEEECCSSCCCBT-------------------------THHHHT
T ss_pred CCCCceEEECCCCccccchhhhhcccC-------CCCEEECCCCCcCCc-------------------------ccchhh
Confidence 445555555555555554454444444 555555555555421 011233
Q ss_pred cccccccceEeccCCcCCCcCch-hhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCC
Q 040109 390 KSILGLIKIIDLSSNKLGGEVPE-EIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLL 468 (598)
Q Consensus 390 ~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 468 (598)
+..+++|+.|++++|++++.+|. .+..+++|++|++++|++++.+|..+. ++|++|++++|+++ .+|..+.++++|
T Consensus 399 ~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L 475 (562)
T 3a79_B 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQAL 475 (562)
T ss_dssp TTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCC
T ss_pred hcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCC
Confidence 56678999999999999975665 478899999999999999988877665 78999999999998 788777799999
Q ss_pred CEEeCCCCcceecCCCC--CccCccCCCccCCCCCCCCCCC
Q 040109 469 SVMDLSYNNFSGKIPKG--TQLQRFGASTYAGNPELCGLPL 507 (598)
Q Consensus 469 ~~L~ls~N~l~~~~p~~--~~~~~l~~~~~~gnp~lC~~~~ 507 (598)
++|++++|+++ .+|.. ..++++..+.+++||+.|+|+.
T Consensus 476 ~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 476 QELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp SEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred CEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 99999999998 56764 5678888899999999998864
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7.4e-39 Score=365.28 Aligned_cols=412 Identities=21% Similarity=0.236 Sum_probs=291.4
Q ss_pred CcEEEEEcCCCCCCCCCCCceec-CccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccc--cC
Q 040109 82 GHVLGLDLRALSDSPVDALKGTI-NPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQ--LG 158 (598)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~l~g~l-~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--l~ 158 (598)
..++.|++++ +...+.+ |.+|.++++|++|+|++|.+++. .|..|+.+++|++|+|++|.+++.+|.. |+
T Consensus 48 ~~L~~LdLs~------n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 120 (844)
T 3j0a_A 48 EQLQLLELGS------QYTPLTIDKEAFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120 (844)
T ss_dssp CSCSEEEECT------TCCCCEECTTTTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCS
T ss_pred ccCeEEeCCC------CCCccccCHHHhcCCCCCCEEECCCCcCccc-CHhHccCCcccCEeeCcCCCCCcccccCcccc
Confidence 4578888887 5566667 66789999999999999999875 7888999999999999999998766655 88
Q ss_pred CCCCCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCC--C------------------------
Q 040109 159 NLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNL--R------------------------ 212 (598)
Q Consensus 159 ~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l--~------------------------ 212 (598)
++++|++|++++|.+........++++++|++|++++|.+++... ..+..+ +
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~--~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~ 198 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE--HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS--GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSS
T ss_pred ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH--HHcccccCCccceEECCCCccccccccchhhcC
Confidence 999999999999988544444578899999999999998876421 222211 2
Q ss_pred ------CCcEEeccCcCCCCCCCChhhhc----------------------------------c-ccCCccEEEccCCCC
Q 040109 213 ------SLTTLYLGHCDLPPISTPSLLHL----------------------------------N-YSKSLEVIDLSNNYL 251 (598)
Q Consensus 213 ------~L~~L~l~~n~l~~~~~~~~~~~----------------------------------~-~~~~L~~L~Ls~n~l 251 (598)
+|+.|++++|.+.+..+..+... . ..++|+.|++++|.+
T Consensus 199 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l 278 (844)
T 3j0a_A 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV 278 (844)
T ss_dssp CTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCC
T ss_pred CccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcc
Confidence 26667777665544333211100 0 015678888888888
Q ss_pred CCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCC-cchhhcCCCCCcEEEcccCcCccchhh
Q 040109 252 TNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLRE-VPKFLGNMSSLKMLVLSYNELRGELSE 330 (598)
Q Consensus 252 ~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~~~~~ 330 (598)
.+..+..+..++. |+.|++++|.+++..|..|..+++|++|++++|.+++ .|..+..+++|+.|++++|.+.+..+.
T Consensus 279 ~~~~~~~~~~l~~--L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~ 356 (844)
T 3j0a_A 279 FSLNSRVFETLKD--LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ 356 (844)
T ss_dssp CEECSCCSSSCCC--CCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSS
T ss_pred cccChhhhhcCCC--CCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChh
Confidence 7766777777777 8888888888877777777778888888888888777 356777777777888877777776666
Q ss_pred hhhhcCCCCCCCCCCCEEEccCcccccc------------------CCC-----------------------CCCCCcCc
Q 040109 331 FIQNVSSGSTKNSSLEWLYLASNEITGT------------------IPN-----------------------LGGFPGML 369 (598)
Q Consensus 331 ~l~~l~~g~~~~~~L~~L~Ls~N~l~~~------------------~p~-----------------------l~~l~~l~ 369 (598)
.+..++ +|+.|++++|.+++. +|. +.+++++.
T Consensus 357 ~~~~l~-------~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~ 429 (844)
T 3j0a_A 357 TFKFLE-------KLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQ 429 (844)
T ss_dssp CSCSCC-------CCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCC
T ss_pred hhcCCC-------CCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccc
Confidence 665555 444444444443321 111 01233333
Q ss_pred ccc-------------------------ccccceEEEE-cCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEE
Q 040109 370 MPL-------------------------IYFDKITVTW-KGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVAL 423 (598)
Q Consensus 370 ~~~-------------------------~~~~~~~~~~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 423 (598)
... ...+.+...+ .+..+..+..+++|+.|+|++|++++..|..|..+++|+.|
T Consensus 430 ~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 509 (844)
T 3j0a_A 430 ILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL 509 (844)
T ss_dssp EEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEE
T ss_pred eeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhhee
Confidence 221 1111111000 12223446678999999999999999889899999999999
Q ss_pred ECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcceecCCCCCccCccCCCccCCCCCCC
Q 040109 424 NLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELC 503 (598)
Q Consensus 424 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~gnp~lC 503 (598)
+|++|++++..|..+. ++|+.|+|++|++++..|+.+ ++|+.|++++|++.|.++.......+ ..++..+|
T Consensus 510 ~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~~f~~~~----~~~~~~~~ 580 (844)
T 3j0a_A 510 SLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELSTFINWL----NHTNVTIA 580 (844)
T ss_dssp EEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCCSHHHHH----HHTTTTTC
T ss_pred ECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccccHHHHHHH----HhcCcccc
Confidence 9999999977666665 899999999999999998775 47999999999999888754332222 23466778
Q ss_pred CCCCCCCCCCCCCCCCC
Q 040109 504 GLPLPNKCLDEESAPSP 520 (598)
Q Consensus 504 ~~~~~~~c~~~~~~~~~ 520 (598)
+.+....|..|....+.
T Consensus 581 ~~~~~~~C~~p~~~~g~ 597 (844)
T 3j0a_A 581 GPPADIYCVYPDSFSGV 597 (844)
T ss_dssp CCGGGCCCSSCSSSCSC
T ss_pred cccccCccCCchhhCCC
Confidence 87777889887776544
No 21
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-38 Score=347.66 Aligned_cols=381 Identities=20% Similarity=0.217 Sum_probs=310.7
Q ss_pred CcEEEEEcCCCCCCCCCCCceecCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCC
Q 040109 82 GHVLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLS 161 (598)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 161 (598)
..++.|++++ +.+++..+..|.++++|++|++++|.++.. .|..|+.+++|++|++++|.+++..+..+++++
T Consensus 52 ~~L~~L~Ls~------n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 124 (570)
T 2z63_A 52 PELQVLDLSR------CEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124 (570)
T ss_dssp SSCCEEECTT------CCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCT
T ss_pred CCceEEECCC------CcCCccCcccccCchhCCEEeCcCCcCCcc-CHhhhcCccccccccccccccccCCCccccccc
Confidence 4688999998 788887778899999999999999999874 568899999999999999999976666799999
Q ss_pred CCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCC----cEEeccCcCCCCCCCChhh----
Q 040109 162 RLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSL----TTLYLGHCDLPPISTPSLL---- 233 (598)
Q Consensus 162 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L----~~L~l~~n~l~~~~~~~~~---- 233 (598)
+|++|++++|.+.....+..+.++++|++|++++|.+++++ +..+..+++| +.+++++|.+.+..+..+.
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L 202 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY--CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 202 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC--GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEE
T ss_pred cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec--HHHccchhccchhhhhcccCCCCceecCHHHhccCcc
Confidence 99999999999844345677999999999999999998763 3556666666 7788888877655432221
Q ss_pred --------------------------------------------------------------------------hccccC
Q 040109 234 --------------------------------------------------------------------------HLNYSK 239 (598)
Q Consensus 234 --------------------------------------------------------------------------~~~~~~ 239 (598)
....++
T Consensus 203 ~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~ 282 (570)
T 2z63_A 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282 (570)
T ss_dssp EEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGT
T ss_pred eeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcC
Confidence 011237
Q ss_pred CccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchh-h-------------------cCCCCccEEeeccC
Q 040109 240 SLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVA-F-------------------GHMASLRYLGLLSN 299 (598)
Q Consensus 240 ~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~-l-------------------~~l~~L~~L~Ls~n 299 (598)
+|+.|++++|.++ .+|..+... . |++|++++|.+. .+|.. + ..+++|++|++++|
T Consensus 283 ~L~~L~l~~~~l~-~l~~~~~~~-~--L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n 357 (570)
T 2z63_A 283 NVSSFSLVSVTIE-RVKDFSYNF-G--WQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN 357 (570)
T ss_dssp TCSEEEEESCEEC-SCCBCCSCC-C--CSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSS
T ss_pred cccEEEecCccch-hhhhhhccC-C--ccEEeeccCccc-ccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCC
Confidence 8999999999887 567666665 5 777777777665 23221 1 56788999999999
Q ss_pred CCCCc---chhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCC--CCCCCCcCcccccc
Q 040109 300 RLREV---PKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIP--NLGGFPGMLMPLIY 374 (598)
Q Consensus 300 ~l~~l---p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p--~l~~l~~l~~~~~~ 374 (598)
.++.+ |..+..+++|++|++++|.+.+..+. +..++ +|+.|++++|.+++..| .+.+++++......
T Consensus 358 ~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~-------~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 429 (570)
T 2z63_A 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLE-------QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429 (570)
T ss_dssp CCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCT-------TCCEEECTTSEEESCTTSCTTTTCTTCCEEECT
T ss_pred ccCccccccccccccCccCEEECCCCcccccccc-ccccC-------CCCEEEccCCccccccchhhhhcCCCCCEEeCc
Confidence 99874 67899999999999999999887666 77777 89999999999998766 46777777766554
Q ss_pred ccceEEEEcCCcccccccccccceEeccCCcCC-CcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCc
Q 040109 375 FDKITVTWKGGQYEYKSILGLIKIIDLSSNKLG-GEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINH 453 (598)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 453 (598)
.+.+. +..+..+..+++|++|++++|.++ +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|+
T Consensus 430 ~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 430 HTHTR----VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505 (570)
T ss_dssp TSCCE----ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCccc----ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc
Confidence 44432 223445677899999999999997 5789999999999999999999998889999999999999999999
Q ss_pred cCCCCcccccCCCCCCEEeCCCCcceecCCCCCcc
Q 040109 454 FFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQL 488 (598)
Q Consensus 454 l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~ 488 (598)
+++..|..+.++++|++|++++|+++|.+|....+
T Consensus 506 l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 506 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred CCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence 99888888999999999999999999999976444
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.2e-38 Score=358.08 Aligned_cols=381 Identities=18% Similarity=0.191 Sum_probs=287.6
Q ss_pred CCCceecCccccCCCCCCEEECcCCCCCCC----------------CcchhcC--CCCCCCEEECCCCCCCCCCccccCC
Q 040109 98 DALKGTINPSLLKLQHLTYLDLSWNNFSGS----------------PIPEFIG--SLSKLSELALSSAQLAGPIPHQLGN 159 (598)
Q Consensus 98 ~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~----------------~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~ 159 (598)
+.++| +|+.|+++++|++|+|++|.+++. .+|..++ ++++|++|+|++|.+.+.+|..|++
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 56666 888899999999999999998861 1788877 8999999999999988899999999
Q ss_pred CCCCCEEEccCCC-CCCC-CCccc-------ccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCC
Q 040109 160 LSRLQVLDLRFNN-LFSS-GNLDW-------LSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTP 230 (598)
Q Consensus 160 l~~L~~L~Ls~n~-l~~~-~~~~~-------l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 230 (598)
+++|++|++++|+ + .. ..+.. +..+++|++|++++|.++.+|. ...+..+++|+.|++++|.++..+
T Consensus 514 L~~L~~L~Ls~N~~l-sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~-~~~l~~L~~L~~L~Ls~N~l~~lp-- 589 (876)
T 4ecn_A 514 LPELQSLNIACNRGI-SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA-SASLQKMVKLGLLDCVHNKVRHLE-- 589 (876)
T ss_dssp CSSCCEEECTTCTTS-CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCC-HHHHTTCTTCCEEECTTSCCCBCC--
T ss_pred CCCCCEEECcCCCCc-ccccchHHHHhhhhcccccCCccEEEeeCCcCCccCC-hhhhhcCCCCCEEECCCCCcccch--
Confidence 9999999999997 5 22 23332 3455699999999998886432 127888999999999999888443
Q ss_pred hhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCC--ccEEeeccCCCCC-cch-
Q 040109 231 SLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMAS--LRYLGLLSNRLRE-VPK- 306 (598)
Q Consensus 231 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~Ls~n~l~~-lp~- 306 (598)
.+... ++|+.|++++|.++ .+|..+..++.. |+.|++++|.++ .+|..+..++. |+.|++++|++.+ +|.
T Consensus 590 ~~~~L---~~L~~L~Ls~N~l~-~lp~~l~~l~~~-L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l 663 (876)
T 4ecn_A 590 AFGTN---VKLTDLKLDYNQIE-EIPEDFCAFTDQ-VEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663 (876)
T ss_dssp CCCTT---SEESEEECCSSCCS-CCCTTSCEECTT-CCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSC
T ss_pred hhcCC---CcceEEECcCCccc-cchHHHhhcccc-CCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccc
Confidence 23322 88999999999988 778777776532 888999999988 77877776654 8999999998877 332
Q ss_pred --hhc--CCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCC-CC--------CCCcCccccc
Q 040109 307 --FLG--NMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPN-LG--------GFPGMLMPLI 373 (598)
Q Consensus 307 --~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~-l~--------~l~~l~~~~~ 373 (598)
.+. .+++|+.|++++|.+...++..+..++ +|+.|+|++|.++ .+|. +. ++++|..+..
T Consensus 664 ~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~-------~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~L 735 (876)
T 4ecn_A 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGS-------PISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDL 735 (876)
T ss_dssp SSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTC-------CCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEEC
T ss_pred hhhhccccCCCcCEEEccCCcCCccCHHHHccCC-------CCCEEECCCCcCC-ccChHHhccccccccccCCccEEEC
Confidence 222 345888999999998865555555666 8999999999888 4443 22 2235555444
Q ss_pred cccceEEEEcCCcccccc--cccccceEeccCCcCCCcCchhhhcccCCcEEECcC------CcCcccCCcccCCCCCCC
Q 040109 374 YFDKITVTWKGGQYEYKS--ILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSN------NNLTGQITPRIGQLKSLD 445 (598)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~------N~l~~~~p~~l~~l~~L~ 445 (598)
..+.+. .++..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++ |++.+.+|..+.++++|+
T Consensus 736 s~N~L~-----~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~ 809 (876)
T 4ecn_A 736 RFNKLT-----SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809 (876)
T ss_dssp CSSCCC-----CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred CCCCCc-----cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCC
Confidence 444432 2334444 78999999999999996 899999999999999977 888999999999999999
Q ss_pred eeeCCCCccCCCCcccccCCCCCCEEeCCCCcceecCCCCC-ccCccCCCccCCCCCCC--CCC
Q 040109 446 FLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGT-QLQRFGASTYAGNPELC--GLP 506 (598)
Q Consensus 446 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~-~~~~l~~~~~~gnp~lC--~~~ 506 (598)
.|+|++|++ +.+|..+. ++|+.|+|++|++...-+... .........+.+|+..+ ||+
T Consensus 810 ~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~ 870 (876)
T 4ecn_A 810 QLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD 870 (876)
T ss_dssp EEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCG
T ss_pred EEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCC
Confidence 999999999 78998765 699999999999974333221 12233455566776654 665
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=336.47 Aligned_cols=349 Identities=20% Similarity=0.216 Sum_probs=257.8
Q ss_pred CCcEEEEEcCCCCCCCCCCCceecCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCC-CCccccCC
Q 040109 81 TGHVLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAG-PIPHQLGN 159 (598)
Q Consensus 81 ~~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~ 159 (598)
-.+++.|++++ +.+++..|..|.++++|++|+|++|.++. +|.. .+++|++|++++|.+++ .+|..|++
T Consensus 44 l~~L~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~ 113 (520)
T 2z7x_B 44 LSKLRILIISH------NRIQYLDISVFKFNQELEYLDLSHNKLVK--ISCH--PTVNLKHLDLSFNAFDALPICKEFGN 113 (520)
T ss_dssp CTTCCEEECCS------SCCCEEEGGGGTTCTTCCEEECCSSCCCE--EECC--CCCCCSEEECCSSCCSSCCCCGGGGG
T ss_pred cccccEEecCC------CccCCcChHHhhcccCCCEEecCCCceee--cCcc--ccCCccEEeccCCccccccchhhhcc
Confidence 35789999998 88998889999999999999999999983 7776 79999999999999997 57899999
Q ss_pred CCCCCEEEccCCCCCCCCCcccccCCCCC--CEEEcCCCcC--CCCCchhHhhcC-------------------------
Q 040109 160 LSRLQVLDLRFNNLFSSGNLDWLSYLSSL--RYLDLGDCKL--SKFSNWFQVLSN------------------------- 210 (598)
Q Consensus 160 l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~~~l~~------------------------- 210 (598)
+++|++|++++|.+.. ..+..+++| ++|++++|.+ .+. .+..+..
T Consensus 114 l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~--~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~ 187 (520)
T 2z7x_B 114 MSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGEKE--DPEGLQDFNTESLHIVFPTNKEFHFILDVSVK 187 (520)
T ss_dssp CTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTSSC--CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCT
T ss_pred CCcceEEEecCcccch----hhccccccceeeEEEeeccccccccc--ccccccccccceEEEEeccCcchhhhhhhhhh
Confidence 9999999999999732 347778888 9999999988 332 2222222
Q ss_pred -CCCCcEEeccCcC------------------------------CCCCCCChhhhccccCCccEEEccCCCCCCCcchhh
Q 040109 211 -LRSLTTLYLGHCD------------------------------LPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWL 259 (598)
Q Consensus 211 -l~~L~~L~l~~n~------------------------------l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l 259 (598)
+++|+.+++++|. +.+............++|++|++++|.+++.+|..+
T Consensus 188 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 267 (520)
T 2z7x_B 188 TVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRD 267 (520)
T ss_dssp TCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCC
T ss_pred cccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccch
Confidence 3344444444432 111000000000001356666666666665555554
Q ss_pred -----hhcCc------------------------cCccEEEccCCccccccchhhcCCCCccEEeeccCCCCC-cchhhc
Q 040109 260 -----LNVSS------------------------NLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLRE-VPKFLG 309 (598)
Q Consensus 260 -----~~~~~------------------------~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-lp~~l~ 309 (598)
..++. ..++.|++++|.+.... .+..+++|++|++++|++++ +|..+.
T Consensus 268 ~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 345 (520)
T 2z7x_B 268 FDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCG 345 (520)
T ss_dssp CCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC
T ss_pred hhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhc
Confidence 34443 01555555555544221 12567788888888888887 777788
Q ss_pred CCCCCcEEEcccCcCcc--chhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcc
Q 040109 310 NMSSLKMLVLSYNELRG--ELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQY 387 (598)
Q Consensus 310 ~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~ 387 (598)
.+++|++|++++|++.+ ..|..+..++ +|++|++++|.+++.+|.
T Consensus 346 ~l~~L~~L~L~~N~l~~l~~~~~~~~~l~-------~L~~L~Ls~N~l~~~l~~-------------------------- 392 (520)
T 2z7x_B 346 HLTELETLILQMNQLKELSKIAEMTTQMK-------SLQQLDISQNSVSYDEKK-------------------------- 392 (520)
T ss_dssp CCSSCCEEECCSSCCCBHHHHHHHHTTCT-------TCCEEECCSSCCBCCGGG--------------------------
T ss_pred cCCCCCEEEccCCccCccccchHHHhhCC-------CCCEEECCCCcCCccccc--------------------------
Confidence 88888888888888886 4556777777 788888888888764442
Q ss_pred cccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCccc-ccCCC
Q 040109 388 EYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSS-LSRLR 466 (598)
Q Consensus 388 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~ 466 (598)
..+..+++|+.|++++|++++.+|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..++
T Consensus 393 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~ 468 (520)
T 2z7x_B 393 GDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLT 468 (520)
T ss_dssp CSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCT
T ss_pred chhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCC
Confidence 1234567899999999999988887664 79999999999999 88988889999999999999998 56654 89999
Q ss_pred CCCEEeCCCCcceecCCC
Q 040109 467 LLSVMDLSYNNFSGKIPK 484 (598)
Q Consensus 467 ~L~~L~ls~N~l~~~~p~ 484 (598)
+|++|++++|+++|.++.
T Consensus 469 ~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 469 SLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp TCCEEECCSSCBCCCHHH
T ss_pred cccEEECcCCCCcccCCc
Confidence 999999999999987664
No 24
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.8e-37 Score=344.02 Aligned_cols=383 Identities=21% Similarity=0.263 Sum_probs=296.2
Q ss_pred cEEEEEcCCCCCCCCCCCceecCccccCCCC--CCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCC
Q 040109 83 HVLGLDLRALSDSPVDALKGTINPSLLKLQH--LTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNL 160 (598)
Q Consensus 83 ~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~--L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 160 (598)
.++.+++++ +.+.+..|..+..++. |++|++++|.+++. .|..++.+++|++|++++|.+++..|..|.++
T Consensus 223 ~L~~L~L~~------n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 295 (680)
T 1ziw_A 223 SIRNLSLSN------SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV-GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 295 (680)
T ss_dssp CCCEEECTT------SCCCEECTTTTGGGGGSCCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSCCBSEECTTTTTTC
T ss_pred cccEEEccC------CcccccChhHhhccCcCCCCEEECCCCCcCcc-CcccccCcccccEeeCCCCccCccChhhhcCC
Confidence 456677776 7788888888888765 99999999999875 67789999999999999999998888899999
Q ss_pred CCCCEEEccCCCCCCC----CC----cccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCC--CCC
Q 040109 161 SRLQVLDLRFNNLFSS----GN----LDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPI--STP 230 (598)
Q Consensus 161 ~~L~~L~Ls~n~l~~~----~~----~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~ 230 (598)
++|++|++++|..... .. ...+..+++|++|++++|.+.+++ +..+..+++|++|++++|.+... ...
T Consensus 296 ~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~~~~~~l~~~ 373 (680)
T 1ziw_A 296 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK--SNMFTGLINLKYLSLSNSFTSLRTLTNE 373 (680)
T ss_dssp TTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCC--TTTTTTCTTCCEEECTTCBSCCCEECTT
T ss_pred CCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCC--hhHhccccCCcEEECCCCchhhhhcchh
Confidence 9999999988754210 11 125778899999999999998864 36788899999999998875432 222
Q ss_pred hhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccc-hhhcCCCCccEEeeccCCCCC-cchhh
Q 040109 231 SLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIP-VAFGHMASLRYLGLLSNRLRE-VPKFL 308 (598)
Q Consensus 231 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~-lp~~l 308 (598)
.+..... ++|+.|++++|.+++..|..+..+++ |+.|++++|.+++.+| ..+..+++|++|++++|++.+ .+..+
T Consensus 374 ~f~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 450 (680)
T 1ziw_A 374 TFVSLAH-SPLHILNLTKNKISKIESDAFSWLGH--LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 450 (680)
T ss_dssp TTGGGTT-SCCCEEECTTSCCCEECTTTTTTCTT--CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTT
T ss_pred hhccccc-CcCceEECCCCCCCeEChhhhhCCCC--CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhh
Confidence 2333322 57888888888888777778888888 8888888888877655 577888888888888888776 44567
Q ss_pred cCCCCCcEEEcccCcCc--cchhhhhhhcCCCCCCCCCCCEEEccCccccccCCC-CCCCCcCccccccccceEEEEc--
Q 040109 309 GNMSSLKMLVLSYNELR--GELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPN-LGGFPGMLMPLIYFDKITVTWK-- 383 (598)
Q Consensus 309 ~~l~~L~~L~Ls~n~l~--~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~-l~~l~~l~~~~~~~~~~~~~~~-- 383 (598)
..+++|+.|++++|.+. +..|..+..++ +|+.|++++|++++..|. +.+++++.......+.+.....
T Consensus 451 ~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~-------~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 523 (680)
T 1ziw_A 451 ALVPSLQRLMLRRVALKNVDSSPSPFQPLR-------NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA 523 (680)
T ss_dssp TTCTTCCEEECTTSCCBCTTCSSCTTTTCT-------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTT
T ss_pred hcCcccccchhccccccccccCCcccccCC-------CCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhh
Confidence 77788888888888775 45666666666 788888888888765554 5666666654433333221111
Q ss_pred --CCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCccc
Q 040109 384 --GGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSS 461 (598)
Q Consensus 384 --~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 461 (598)
+.....+..+++|+.|+|++|+++...+..|.++++|+.|++++|++++..+..|..+++|++|++++|++++..|..
T Consensus 524 ~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 603 (680)
T 1ziw_A 524 NPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603 (680)
T ss_dssp STTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHH
T ss_pred ccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhH
Confidence 112234677899999999999999555567999999999999999999777777899999999999999999888888
Q ss_pred cc-CCCCCCEEeCCCCcceecCCC
Q 040109 462 LS-RLRLLSVMDLSYNNFSGKIPK 484 (598)
Q Consensus 462 l~-~l~~L~~L~ls~N~l~~~~p~ 484 (598)
+. .+++|+.|++++|++.+.++.
T Consensus 604 ~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 604 FGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp HHHHHTTCSEEECTTCCCCBCCCC
T ss_pred hcccccccCEEEccCCCcccCCcc
Confidence 87 789999999999999998875
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.9e-37 Score=330.17 Aligned_cols=335 Identities=20% Similarity=0.185 Sum_probs=227.4
Q ss_pred ecCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccc
Q 040109 103 TINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWL 182 (598)
Q Consensus 103 ~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l 182 (598)
.+|..+. +++++|+|++|.+++. .+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|.+ .......|
T Consensus 25 ~ip~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~ 100 (477)
T 2id5_A 25 AVPEGIP--TETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL-KLIPLGVF 100 (477)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CSCCTTSS
T ss_pred cCCCCCC--CCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC-CccCcccc
Confidence 4565543 5889999999999875 577889999999999999999988888999999999999999987 44444567
Q ss_pred cCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhc
Q 040109 183 SYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNV 262 (598)
Q Consensus 183 ~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 262 (598)
.++++|++|++++|.+..++ +..+..+++|++|++++|.+.+..+..+... ++|++|++++|.+++..+..+..+
T Consensus 101 ~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~l~~l 175 (477)
T 2id5_A 101 TGLSNLTKLDISENKIVILL--DYMFQDLYNLKSLEVGDNDLVYISHRAFSGL---NSLEQLTLEKCNLTSIPTEALSHL 175 (477)
T ss_dssp TTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEEECCTTCCEECTTSSTTC---TTCCEEEEESCCCSSCCHHHHTTC
T ss_pred cCCCCCCEEECCCCccccCC--hhHccccccCCEEECCCCccceeChhhccCC---CCCCEEECCCCcCcccChhHhccc
Confidence 88889999999998888753 3567777888888888877776655333322 666666666666665555555555
Q ss_pred CccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCC-cchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCC
Q 040109 263 SSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLRE-VPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTK 341 (598)
Q Consensus 263 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~ 341 (598)
+. |+.|++++|.+.+..+..+..+++|++|++++|...+ +|.......+|+.|++++|.+++..+..+..
T Consensus 176 ~~--L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~------- 246 (477)
T 2id5_A 176 HG--LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH------- 246 (477)
T ss_dssp TT--CCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT-------
T ss_pred CC--CcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC-------
Confidence 55 6666666666665555555555666666666555443 4443333445555555555555444444444
Q ss_pred CCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCc
Q 040109 342 NSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLV 421 (598)
Q Consensus 342 ~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 421 (598)
+++|+.|+|++|.+++..+..|..+++|+
T Consensus 247 ---------------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 275 (477)
T 2id5_A 247 ---------------------------------------------------LVYLRFLNLSYNPISTIEGSMLHELLRLQ 275 (477)
T ss_dssp ---------------------------------------------------CTTCCEEECCSSCCCEECTTSCTTCTTCC
T ss_pred ---------------------------------------------------ccccCeeECCCCcCCccChhhccccccCC
Confidence 34455555555555555555667777777
Q ss_pred EEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcceecCCCCCccCccCCCccCCCCC
Q 040109 422 ALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPE 501 (598)
Q Consensus 422 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~gnp~ 501 (598)
+|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|++.+.++....+.......+.++..
T Consensus 276 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~ 355 (477)
T 2id5_A 276 EIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQP 355 (477)
T ss_dssp EEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCC
T ss_pred EEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCc
Confidence 77777777777777777777777777777777776666667777777888888887776555433333334455666666
Q ss_pred CCCCC
Q 040109 502 LCGLP 506 (598)
Q Consensus 502 lC~~~ 506 (598)
.|..|
T Consensus 356 ~C~~p 360 (477)
T 2id5_A 356 TCATP 360 (477)
T ss_dssp BEEES
T ss_pred eeCCc
Confidence 66544
No 26
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=8.8e-37 Score=332.43 Aligned_cols=372 Identities=24% Similarity=0.250 Sum_probs=273.9
Q ss_pred CcEEEEEcCCCCCCCCCCCceecCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCC-CCccccCCC
Q 040109 82 GHVLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAG-PIPHQLGNL 160 (598)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l 160 (598)
.+++.|++++ +.+++..|..|..+++|++|++++|.+++. .|..|+.+++|++|++++|.+++ ..|..++++
T Consensus 50 ~~L~~L~Ls~------n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 122 (549)
T 2z81_A 50 ANLQVLILKS------SRINTIEGDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122 (549)
T ss_dssp TTCCEEECTT------SCCCEECTTTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred CcccEEECCC------CCcCccChhhccccccCCEEECCCCccCcc-CHHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence 5689999998 889988888999999999999999999975 66779999999999999999986 457789999
Q ss_pred CCCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcC------------------------CCCCcE
Q 040109 161 SRLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSN------------------------LRSLTT 216 (598)
Q Consensus 161 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~------------------------l~~L~~ 216 (598)
++|++|++++|.+........+.++++|++|++++|.+++. .+..+.. +++|++
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 200 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY--QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRY 200 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE--CTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSE
T ss_pred CCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc--ChhhhhccccCceEecccCcccccchhhHhhcccccE
Confidence 99999999999853444445688899999999999988763 2233433 556666
Q ss_pred EeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcch---------------------------------------
Q 040109 217 LYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYP--------------------------------------- 257 (598)
Q Consensus 217 L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~--------------------------------------- 257 (598)
|++++|++++............++|+.|++++|.+++..+.
T Consensus 201 L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l 280 (549)
T 2z81_A 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSEL 280 (549)
T ss_dssp EEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCC
T ss_pred EEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhh
Confidence 66666666653211011111112233333322222110000
Q ss_pred ------------------------hhhhcCccCccEEEccCCccccccchhh-cCCCCccEEeeccCCCCC-cch---hh
Q 040109 258 ------------------------WLLNVSSNLVDHIDLGSNRLHGSIPVAF-GHMASLRYLGLLSNRLRE-VPK---FL 308 (598)
Q Consensus 258 ------------------------~l~~~~~~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~-lp~---~l 308 (598)
....... ++.|++++|.++ .+|..+ ..+++|++|++++|++++ +|. .+
T Consensus 281 ~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~--L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 357 (549)
T 2z81_A 281 GKVETVTIRRLHIPQFYLFYDLSTVYSLLEK--VKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK 357 (549)
T ss_dssp TTCCEEEEESCBCSCGGGSCCCCHHHHHSTT--CCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCT
T ss_pred cccccccccccccchhhhcccchhhhhhccc--ceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhh
Confidence 0111233 778888888876 566555 578999999999999887 443 36
Q ss_pred cCCCCCcEEEcccCcCccchh--hhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCc
Q 040109 309 GNMSSLKMLVLSYNELRGELS--EFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQ 386 (598)
Q Consensus 309 ~~l~~L~~L~Ls~n~l~~~~~--~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~ 386 (598)
..+++|++|++++|++++..+ ..+..++ +|++|++++|++++..+.+..++++.......+.+.. .
T Consensus 358 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~-------~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~-----l 425 (549)
T 2z81_A 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLK-------NLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV-----V 425 (549)
T ss_dssp TSSTTCCEEECTTSCCCCHHHHHHHGGGCT-------TCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSC-----C
T ss_pred hccccCcEEEccCCcccccccchhhhhcCC-------CCCEEECCCCCCccCChhhcccccccEEECCCCCccc-----c
Confidence 788899999999999987654 5577777 8999999999988544446666666655443333320 0
Q ss_pred ccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCC
Q 040109 387 YEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLR 466 (598)
Q Consensus 387 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 466 (598)
+. ..+++|++|++++|++++.+ ..+++|++|++++|+++ .+|. ...+++|++|+|++|++++..|..+..++
T Consensus 426 ~~--~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 497 (549)
T 2z81_A 426 KT--CIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLT 497 (549)
T ss_dssp CT--TSCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCT
T ss_pred cc--hhcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCc
Confidence 11 12368999999999999653 57899999999999999 7776 56799999999999999999888999999
Q ss_pred CCCEEeCCCCcceecCCCC
Q 040109 467 LLSVMDLSYNNFSGKIPKG 485 (598)
Q Consensus 467 ~L~~L~ls~N~l~~~~p~~ 485 (598)
+|+.|++++|++.|.+|..
T Consensus 498 ~L~~L~l~~N~~~~~~~~~ 516 (549)
T 2z81_A 498 SLQKIWLHTNPWDCSCPRI 516 (549)
T ss_dssp TCCEEECCSSCBCCCHHHH
T ss_pred ccCEEEecCCCccCCCccH
Confidence 9999999999999988843
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.3e-36 Score=331.70 Aligned_cols=350 Identities=22% Similarity=0.234 Sum_probs=262.3
Q ss_pred CcEEEEEcCCCCCCCCCCCceecCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCC
Q 040109 82 GHVLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLS 161 (598)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 161 (598)
..++.+++++ +.+++..|.+|.++++|++|+|++|.+++. .|+.|..+++|++|+|++|.++ .+|.. .++
T Consensus 52 ~~L~~L~Ls~------N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~ 121 (562)
T 3a79_B 52 PRTKALSLSQ------NSISELRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMA 121 (562)
T ss_dssp TTCCEEECCS------SCCCCCCGGGTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSCCC-EECSC--CCT
T ss_pred CCcCEEECCC------CCccccChhhhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCcCC-ccCcc--ccc
Confidence 5678888888 777776667888888899999988888874 6778888888999999888888 56665 788
Q ss_pred CCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCC--cEEeccCcCC--CCCCCChhhhcc-
Q 040109 162 RLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSL--TTLYLGHCDL--PPISTPSLLHLN- 236 (598)
Q Consensus 162 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L--~~L~l~~n~l--~~~~~~~~~~~~- 236 (598)
+|++|++++|++.....+..+.++++|++|++++|.++.. .+..+++| ++|++++|.+ ++..+..+....
T Consensus 122 ~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~ 196 (562)
T 3a79_B 122 SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-----DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT 196 (562)
T ss_dssp TCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-----TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCE
T ss_pred cCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC-----chhhhhhceeeEEEeecccccccccCcccccccCc
Confidence 8889999888874434446788888899999888888763 23444444 8888888887 555443332211
Q ss_pred ----------------------ccC-------------------------------------------------------
Q 040109 237 ----------------------YSK------------------------------------------------------- 239 (598)
Q Consensus 237 ----------------------~~~------------------------------------------------------- 239 (598)
..+
T Consensus 197 ~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~ 276 (562)
T 3a79_B 197 TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR 276 (562)
T ss_dssp EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTS
T ss_pred ceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcc
Confidence 012
Q ss_pred CccEEEccCCCCCCCcchhh-----hhcCc------------------------cCccEEEccCCccccccchhhcCCCC
Q 040109 240 SLEVIDLSNNYLTNSIYPWL-----LNVSS------------------------NLVDHIDLGSNRLHGSIPVAFGHMAS 290 (598)
Q Consensus 240 ~L~~L~Ls~n~l~~~~~~~l-----~~~~~------------------------~~L~~L~L~~n~l~~~~p~~l~~l~~ 290 (598)
+|++|++++|.+++.+|..+ ..+.. ..+++|++++|.+.... ....+++
T Consensus 277 ~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~ 354 (562)
T 3a79_B 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSS 354 (562)
T ss_dssp SEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCC
T ss_pred cccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCC
Confidence 44444444444444444333 11111 01344444444433111 0167889
Q ss_pred ccEEeeccCCCCC-cchhhcCCCCCcEEEcccCcCccc--hhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCc
Q 040109 291 LRYLGLLSNRLRE-VPKFLGNMSSLKMLVLSYNELRGE--LSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPG 367 (598)
Q Consensus 291 L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~ 367 (598)
|++|++++|.+++ +|..+.++++|++|++++|++++. .|..+..++ +|+.|++++|.+++.+|.
T Consensus 355 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~-------~L~~L~l~~N~l~~~~~~------ 421 (562)
T 3a79_B 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS-------SLETLDVSLNSLNSHAYD------ 421 (562)
T ss_dssp CCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCT-------TCCEEECTTSCCBSCCSS------
T ss_pred ceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCC-------CCCEEECCCCcCCCccCh------
Confidence 9999999999998 888999999999999999999974 456677777 999999999999975553
Q ss_pred CccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCee
Q 040109 368 MLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFL 447 (598)
Q Consensus 368 l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 447 (598)
..+..+++|+.|++++|++++.+|..+. ++|+.|++++|+++ .+|..+..+++|++|
T Consensus 422 --------------------~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L 478 (562)
T 3a79_B 422 --------------------RTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQEL 478 (562)
T ss_dssp --------------------CCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEE
T ss_pred --------------------hhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEE
Confidence 1234567899999999999987776654 79999999999999 788888899999999
Q ss_pred eCCCCccCCCCccc-ccCCCCCCEEeCCCCcceecCCCC
Q 040109 448 DLSINHFFGGIPSS-LSRLRLLSVMDLSYNNFSGKIPKG 485 (598)
Q Consensus 448 ~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~~p~~ 485 (598)
+|++|+++ .+|.. +..+++|+.|++++|++.|.+|..
T Consensus 479 ~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 479 NVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp ECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred ECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence 99999999 56665 999999999999999999887754
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.6e-36 Score=315.66 Aligned_cols=336 Identities=20% Similarity=0.211 Sum_probs=263.9
Q ss_pred cCCCCCCEEECcCCCCCCCCcch-hcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCC
Q 040109 109 LKLQHLTYLDLSWNNFSGSPIPE-FIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSS 187 (598)
Q Consensus 109 ~~l~~L~~L~Ls~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~ 187 (598)
..++++++|++++|.++. +|. .+..+++|++|++++|.+++..+..|..+++|++|++++|.+ ....+..+.++++
T Consensus 42 ~~l~~l~~l~l~~~~l~~--l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPL 118 (390)
T ss_dssp GGGCCCSEEEEESCEESE--ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTT
T ss_pred cccCCceEEEecCCchhh--CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCC-CcCCHHHhcCCCC
Confidence 457899999999999985 554 478899999999999999977778999999999999999997 4455667899999
Q ss_pred CCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCc
Q 040109 188 LRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLV 267 (598)
Q Consensus 188 L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L 267 (598)
|++|++++|.++.++. ..+..+++|++|++++|.+.+..+..+... ++|++|++++|.+++. .+..++. |
T Consensus 119 L~~L~L~~n~l~~l~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~---~~~~l~~--L 188 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPR--GIFHNTPKLTTLSMSNNNLERIEDDTFQAT---TSLQNLQLSSNRLTHV---DLSLIPS--L 188 (390)
T ss_dssp CCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCBCCTTTTSSC---TTCCEEECCSSCCSBC---CGGGCTT--C
T ss_pred CCEEECCCCccCcCCH--HHhcCCCCCcEEECCCCccCccChhhccCC---CCCCEEECCCCcCCcc---ccccccc--c
Confidence 9999999999998754 457889999999999999988776444433 8899999999998864 2455666 8
Q ss_pred cEEEccCCccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCE
Q 040109 268 DHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEW 347 (598)
Q Consensus 268 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~ 347 (598)
+.|++++|.+++ +...++|++|++++|.+..+|... .++|+.|++++|.+++. ..+..++ +|++
T Consensus 189 ~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~-------~L~~ 252 (390)
T 3o6n_A 189 FHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYP-------GLVE 252 (390)
T ss_dssp SEEECCSSCCSE-----EECCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC--GGGGGCT-------TCSE
T ss_pred ceeecccccccc-----cCCCCcceEEECCCCeeeeccccc--cccccEEECCCCCCccc--HHHcCCC-------CccE
Confidence 899999998874 234568899999999988876533 47889999999988864 4566666 8888
Q ss_pred EEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcC
Q 040109 348 LYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSN 427 (598)
Q Consensus 348 L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 427 (598)
|++++|.+++..| ..+..+++|+.|++++|+++ .+|..+..+++|++|++++
T Consensus 253 L~Ls~n~l~~~~~---------------------------~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~ 304 (390)
T 3o6n_A 253 VDLSYNELEKIMY---------------------------HPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSH 304 (390)
T ss_dssp EECCSSCCCEEES---------------------------GGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCS
T ss_pred EECCCCcCCCcCh---------------------------hHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCC
Confidence 8988888876433 23445677888888888888 4566677788888888988
Q ss_pred CcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcceecCCCCCccCccCCCccCCCCCCCCCC
Q 040109 428 NNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLP 506 (598)
Q Consensus 428 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~gnp~lC~~~ 506 (598)
|+++ .+|..+..+++|++|++++|+++.. | +..+++|++|++++|++.+... ...+..+....+.+++..|.++
T Consensus 305 n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 305 NHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp SCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCSCCCTT
T ss_pred Ccce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhH-HHHHHHHHhhcccccCceeccc
Confidence 8888 6677778888888899988888744 3 6778888889999888876422 2345555666677777777654
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.2e-35 Score=310.92 Aligned_cols=342 Identities=27% Similarity=0.360 Sum_probs=230.3
Q ss_pred cEEEEEcCCCCCCCCCCCceecCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCC
Q 040109 83 HVLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSR 162 (598)
Q Consensus 83 ~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 162 (598)
+++.+++.+ +.+.. +| .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++..+ ++++++
T Consensus 47 ~l~~L~l~~------~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~ 113 (466)
T 1o6v_A 47 QVTTLQADR------LGIKS-ID-GVEYLNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIADITP--LANLTN 113 (466)
T ss_dssp TCCEEECCS------SCCCC-CT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTT
T ss_pred cccEEecCC------CCCcc-Cc-chhhhcCCCEEECCCCccCC--chh-hhccccCCEEECCCCccccChh--hcCCCC
Confidence 567778776 44442 44 37778889999999988885 444 8888899999999888885544 888889
Q ss_pred CCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCcc
Q 040109 163 LQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLE 242 (598)
Q Consensus 163 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~ 242 (598)
|++|++++|.+.. .+.+.++++|++|++++|.+.+++ .+..+++|++|+++ +.+.+..+ +. + +++|+
T Consensus 114 L~~L~L~~n~l~~---~~~~~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~-~~~~~~~~--~~--~-l~~L~ 180 (466)
T 1o6v_A 114 LTGLTLFNNQITD---IDPLKNLTNLNRLELSSNTISDIS----ALSGLTSLQQLSFG-NQVTDLKP--LA--N-LTTLE 180 (466)
T ss_dssp CCEEECCSSCCCC---CGGGTTCTTCSEEEEEEEEECCCG----GGTTCTTCSEEEEE-ESCCCCGG--GT--T-CTTCC
T ss_pred CCEEECCCCCCCC---ChHHcCCCCCCEEECCCCccCCCh----hhccCCcccEeecC-CcccCchh--hc--c-CCCCC
Confidence 9999998888732 223788888999999888888753 47788888888886 44444322 22 2 27888
Q ss_pred EEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccC
Q 040109 243 VIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYN 322 (598)
Q Consensus 243 ~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n 322 (598)
+|++++|.+++. +.+..+++ |++|++++|.+++..| ++.+++|++|++++|.+++++ .+..+++|+.|++++|
T Consensus 181 ~L~l~~n~l~~~--~~l~~l~~--L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n 253 (466)
T 1o6v_A 181 RLDISSNKVSDI--SVLAKLTN--LESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANN 253 (466)
T ss_dssp EEECCSSCCCCC--GGGGGCTT--CSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSS
T ss_pred EEECcCCcCCCC--hhhccCCC--CCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCC
Confidence 888888887753 34677777 8888888888886655 667888888888888888775 4777888888888888
Q ss_pred cCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEecc
Q 040109 323 ELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLS 402 (598)
Q Consensus 323 ~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls 402 (598)
.+.+..+ +..++ +|+.|++++|.+++..+ +. .+++|+.|+++
T Consensus 254 ~l~~~~~--~~~l~-------~L~~L~l~~n~l~~~~~-~~----------------------------~l~~L~~L~L~ 295 (466)
T 1o6v_A 254 QISNLAP--LSGLT-------KLTELKLGANQISNISP-LA----------------------------GLTALTNLELN 295 (466)
T ss_dssp CCCCCGG--GTTCT-------TCSEEECCSSCCCCCGG-GT----------------------------TCTTCSEEECC
T ss_pred ccccchh--hhcCC-------CCCEEECCCCccCcccc-cc----------------------------CCCccCeEEcC
Confidence 8887665 55555 78888888888775322 22 34455555555
Q ss_pred CCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcceecC
Q 040109 403 SNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFSGKI 482 (598)
Q Consensus 403 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ 482 (598)
+|++++..+ +..+++|+.|++++|++++..| +..+++|++|++++|++++. ..+.++++|+.|++++|++++..
T Consensus 296 ~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 296 ENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLT 369 (466)
T ss_dssp SSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCG
T ss_pred CCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccc
Confidence 555553322 4555555555555555554333 44555555555555555543 24555555555555555555444
Q ss_pred CCCCccCccCCCccCCCCCC
Q 040109 483 PKGTQLQRFGASTYAGNPEL 502 (598)
Q Consensus 483 p~~~~~~~l~~~~~~gnp~l 502 (598)
| ...++++..+.+.+|++.
T Consensus 370 ~-~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 370 P-LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp G-GTTCTTCCEEECCCEEEE
T ss_pred h-hhcCCCCCEEeccCCccc
Confidence 4 334445555555555443
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.7e-35 Score=324.92 Aligned_cols=336 Identities=20% Similarity=0.199 Sum_probs=275.9
Q ss_pred CCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCC
Q 040109 110 KLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLR 189 (598)
Q Consensus 110 ~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~ 189 (598)
.+.+++.+++++|.+... .+..+..+++|++|+|++|.+++..|..|+.+++|++|+|++|.+ ....+..|.++++|+
T Consensus 49 ~l~~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcC-CCCCHHHHcCCCCCC
Confidence 467899999999998863 344578899999999999999988888999999999999999997 445556789999999
Q ss_pred EEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccE
Q 040109 190 YLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDH 269 (598)
Q Consensus 190 ~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~ 269 (598)
+|++++|.++.++. ..+..+++|++|++++|.+++.++..+..+ ++|++|++++|.+++.. +..++. |+.
T Consensus 127 ~L~L~~n~l~~l~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l---~~L~~L~L~~N~l~~~~---~~~l~~--L~~ 196 (597)
T 3oja_B 127 VLVLERNDLSSLPR--GIFHNTPKLTTLSMSNNNLERIEDDTFQAT---TSLQNLQLSSNRLTHVD---LSLIPS--LFH 196 (597)
T ss_dssp EEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCBCCTTTTTTC---TTCCEEECTTSCCSBCC---GGGCTT--CSE
T ss_pred EEEeeCCCCCCCCH--HHhccCCCCCEEEeeCCcCCCCChhhhhcC---CcCcEEECcCCCCCCcC---hhhhhh--hhh
Confidence 99999999998754 557899999999999999998877545443 88999999999998643 455666 999
Q ss_pred EEccCCccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEE
Q 040109 270 IDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLY 349 (598)
Q Consensus 270 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~ 349 (598)
|++++|.+++ +...++|++|++++|.+..+|..+ .++|+.|++++|.+++. ..+..++ +|+.|+
T Consensus 197 L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~--~~l~~l~-------~L~~L~ 260 (597)
T 3oja_B 197 ANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYP-------GLVEVD 260 (597)
T ss_dssp EECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC--GGGGGCT-------TCSEEE
T ss_pred hhcccCcccc-----ccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC--hhhccCC-------CCCEEE
Confidence 9999998874 345578999999999998876544 37899999999999874 5677777 899999
Q ss_pred ccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCc
Q 040109 350 LASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNN 429 (598)
Q Consensus 350 Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 429 (598)
+++|.+++.+| ..++.+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.
T Consensus 261 Ls~N~l~~~~~---------------------------~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~ 312 (597)
T 3oja_B 261 LSYNELEKIMY---------------------------HPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH 312 (597)
T ss_dssp CCSSCCCEEES---------------------------GGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSC
T ss_pred CCCCccCCCCH---------------------------HHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCC
Confidence 99999987654 234557789999999999985 67777889999999999999
Q ss_pred CcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcceecCCCCCccCccCCCccCCCCCCCCCC
Q 040109 430 LTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLP 506 (598)
Q Consensus 430 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~gnp~lC~~~ 506 (598)
++ .+|..+..+++|++|+|++|.+++. | +..+++|+.|++++|++.|..+. ..+..+....+.+++..|+.+
T Consensus 313 l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 313 LL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp CC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred CC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence 99 7888888999999999999999754 3 67788999999999999876432 345666667788888888754
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.8e-35 Score=311.35 Aligned_cols=264 Identities=24% Similarity=0.253 Sum_probs=225.1
Q ss_pred ccCeeeCCC---------CCcEEEEEcCCCCCCCCCCCceecCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEE
Q 040109 72 WRGVRCSNK---------TGHVLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSEL 142 (598)
Q Consensus 72 w~gv~C~~~---------~~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L 142 (598)
|..|.|... ...++.|++++ +.+++..+..|.++++|++|+|++|.+++. .|..|.++++|++|
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~------n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L 85 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGK------NRIKTLNQDEFASFPHLEELELNENIVSAV-EPGAFNNLFNLRTL 85 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCS------SCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEE
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCC------CccceECHhHccCCCCCCEEECCCCccCEe-ChhhhhCCccCCEE
Confidence 567777532 23578899988 889988888999999999999999999975 68899999999999
Q ss_pred ECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCc
Q 040109 143 ALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHC 222 (598)
Q Consensus 143 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n 222 (598)
+|++|.+++..+..|.++++|++|++++|.+ ....+..+.++++|++|++++|.+..++ +..+..+++|++|++++|
T Consensus 86 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 86 GLRSNRLKLIPLGVFTGLSNLTKLDISENKI-VILLDYMFQDLYNLKSLEVGDNDLVYIS--HRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp ECCSSCCCSCCTTSSTTCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEEECCTTCCEEC--TTSSTTCTTCCEEEEESC
T ss_pred ECCCCcCCccCcccccCCCCCCEEECCCCcc-ccCChhHccccccCCEEECCCCccceeC--hhhccCCCCCCEEECCCC
Confidence 9999999977677889999999999999998 4445567899999999999999998863 367899999999999999
Q ss_pred CCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCC
Q 040109 223 DLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLR 302 (598)
Q Consensus 223 ~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 302 (598)
.+++.++..+... ++|+.|++++|.+.+..+..+..++. |++|++++|...+.+|.......+|++|++++|.++
T Consensus 163 ~l~~~~~~~l~~l---~~L~~L~l~~n~i~~~~~~~~~~l~~--L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 237 (477)
T 2id5_A 163 NLTSIPTEALSHL---HGLIVLRLRHLNINAIRDYSFKRLYR--LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237 (477)
T ss_dssp CCSSCCHHHHTTC---TTCCEEEEESCCCCEECTTCSCSCTT--CCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC
T ss_pred cCcccChhHhccc---CCCcEEeCCCCcCcEeChhhcccCcc--cceeeCCCCccccccCcccccCccccEEECcCCccc
Confidence 9998765333333 89999999999999877778888888 999999999988888887777789999999999999
Q ss_pred Ccc-hhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccc
Q 040109 303 EVP-KFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITG 357 (598)
Q Consensus 303 ~lp-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~ 357 (598)
.+| ..+..+++|+.|++++|.+.+..+..+..++ +|+.|++++|++++
T Consensus 238 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-------~L~~L~L~~n~l~~ 286 (477)
T 2id5_A 238 AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL-------RLQEIQLVGGQLAV 286 (477)
T ss_dssp SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT-------TCCEEECCSSCCSE
T ss_pred ccCHHHhcCccccCeeECCCCcCCccChhhccccc-------cCCEEECCCCccce
Confidence 987 4789999999999999999887776666655 66666666666554
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.1e-33 Score=301.34 Aligned_cols=325 Identities=23% Similarity=0.346 Sum_probs=277.6
Q ss_pred CcEEEEEcCCCCCCCCCCCceecCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCC
Q 040109 82 GHVLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLS 161 (598)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 161 (598)
.+++.|++++ +.+.+. ++ +..+++|++|++++|.+.+ ++. +..+++|++|++++|.+++.. . +.+++
T Consensus 68 ~~L~~L~Ls~------n~l~~~-~~-~~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~~~-~-~~~l~ 134 (466)
T 1o6v_A 68 NNLTQINFSN------NQLTDI-TP-LKNLTKLVDILMNNNQIAD--ITP-LANLTNLTGLTLFNNQITDID-P-LKNLT 134 (466)
T ss_dssp TTCCEEECCS------SCCCCC-GG-GTTCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCG-G-GTTCT
T ss_pred cCCCEEECCC------CccCCc-hh-hhccccCCEEECCCCcccc--Chh-hcCCCCCCEEECCCCCCCCCh-H-HcCCC
Confidence 4688999998 677654 44 9999999999999999986 444 899999999999999999653 3 89999
Q ss_pred CCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCc
Q 040109 162 RLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSL 241 (598)
Q Consensus 162 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L 241 (598)
+|++|++++|.+.. .+.+..+++|++|+++ |.+... ..+..+++|++|++++|.+.+... +. .+++|
T Consensus 135 ~L~~L~l~~n~l~~---~~~~~~l~~L~~L~l~-~~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~--l~---~l~~L 201 (466)
T 1o6v_A 135 NLNRLELSSNTISD---ISALSGLTSLQQLSFG-NQVTDL----KPLANLTTLERLDISSNKVSDISV--LA---KLTNL 201 (466)
T ss_dssp TCSEEEEEEEEECC---CGGGTTCTTCSEEEEE-ESCCCC----GGGTTCTTCCEEECCSSCCCCCGG--GG---GCTTC
T ss_pred CCCEEECCCCccCC---ChhhccCCcccEeecC-CcccCc----hhhccCCCCCEEECcCCcCCCChh--hc---cCCCC
Confidence 99999999998732 3458999999999996 555554 248899999999999999987633 32 23899
Q ss_pred cEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEccc
Q 040109 242 EVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSY 321 (598)
Q Consensus 242 ~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~ 321 (598)
++|++++|.+++..+ +..++. |+.|++++|.+++. ..+..+++|++|++++|.+++++. +..+++|+.|++++
T Consensus 202 ~~L~l~~n~l~~~~~--~~~l~~--L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~ 274 (466)
T 1o6v_A 202 ESLIATNNQISDITP--LGILTN--LDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGA 274 (466)
T ss_dssp SEEECCSSCCCCCGG--GGGCTT--CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCS
T ss_pred CEEEecCCccccccc--ccccCC--CCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCC
Confidence 999999999997655 677888 99999999999864 468899999999999999999765 88999999999999
Q ss_pred CcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEec
Q 040109 322 NELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDL 401 (598)
Q Consensus 322 n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 401 (598)
|.+.+..+ +..++ +|+.|++++|++++..+ +..+++|+.|++
T Consensus 275 n~l~~~~~--~~~l~-------~L~~L~L~~n~l~~~~~-----------------------------~~~l~~L~~L~L 316 (466)
T 1o6v_A 275 NQISNISP--LAGLT-------ALTNLELNENQLEDISP-----------------------------ISNLKNLTYLTL 316 (466)
T ss_dssp SCCCCCGG--GTTCT-------TCSEEECCSSCCSCCGG-----------------------------GGGCTTCSEEEC
T ss_pred CccCcccc--ccCCC-------ccCeEEcCCCcccCchh-----------------------------hcCCCCCCEEEC
Confidence 99998766 66666 99999999999885321 356788999999
Q ss_pred cCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcceec
Q 040109 402 SSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFSGK 481 (598)
Q Consensus 402 s~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 481 (598)
++|++++..| +..+++|++|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 317 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~- 389 (466)
T 1o6v_A 317 YFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN- 389 (466)
T ss_dssp CSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC-
T ss_pred cCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC-
Confidence 9999997665 78999999999999999964 578999999999999999998877 8999999999999999996
Q ss_pred CCC
Q 040109 482 IPK 484 (598)
Q Consensus 482 ~p~ 484 (598)
+|.
T Consensus 390 ~p~ 392 (466)
T 1o6v_A 390 APV 392 (466)
T ss_dssp CCB
T ss_pred Cch
Confidence 443
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.3e-33 Score=289.06 Aligned_cols=307 Identities=25% Similarity=0.353 Sum_probs=232.9
Q ss_pred ccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCC
Q 040109 108 LLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSS 187 (598)
Q Consensus 108 l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~ 187 (598)
+..+++|++|+++++.+.. ++. +..+++|++|++++|.+++. +. +..+++|++|++++|.+.. .+.+.++++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~--~~~-~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~---~~~~~~l~~ 111 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS--IQG-IEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD---ISALQNLTN 111 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC--CTT-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC---CGGGTTCTT
T ss_pred chhcccccEEEEeCCcccc--chh-hhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC---chHHcCCCc
Confidence 3456778888888888764 443 67788888888888887743 33 7788888888888887622 345778888
Q ss_pred CCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCc
Q 040109 188 LRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLV 267 (598)
Q Consensus 188 L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L 267 (598)
|++|++++|.+.+++. +..+++|++|++++|......+. ...+++|++|++++|.+.+..+ +..++. |
T Consensus 112 L~~L~l~~n~i~~~~~----~~~l~~L~~L~l~~n~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~--~~~l~~--L 179 (347)
T 4fmz_A 112 LRELYLNEDNISDISP----LANLTKMYSLNLGANHNLSDLSP----LSNMTGLNYLTVTESKVKDVTP--IANLTD--L 179 (347)
T ss_dssp CSEEECTTSCCCCCGG----GTTCTTCCEEECTTCTTCCCCGG----GTTCTTCCEEECCSSCCCCCGG--GGGCTT--C
T ss_pred CCEEECcCCcccCchh----hccCCceeEEECCCCCCcccccc----hhhCCCCcEEEecCCCcCCchh--hccCCC--C
Confidence 8888888888777532 77788888888888855443331 2222788888888888775443 667777 8
Q ss_pred cEEEccCCccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCE
Q 040109 268 DHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEW 347 (598)
Q Consensus 268 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~ 347 (598)
++|++++|.+.+..+ +..+++|++|++++|.+++++. +..+++|++|++++|.+++..+ +..++ +|++
T Consensus 180 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~-------~L~~ 247 (347)
T 4fmz_A 180 YSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLS-------QLTW 247 (347)
T ss_dssp SEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCT-------TCCE
T ss_pred CEEEccCCccccccc--ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCC-------CCCE
Confidence 888888888875433 7788888888888888888655 7788888889998888887655 66666 8889
Q ss_pred EEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcC
Q 040109 348 LYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSN 427 (598)
Q Consensus 348 L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 427 (598)
|++++|.+++. + .+..+++|+.|++++|++++. ..+..+++|++|++++
T Consensus 248 L~l~~n~l~~~-~----------------------------~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~ 296 (347)
T 4fmz_A 248 LEIGTNQISDI-N----------------------------AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNN 296 (347)
T ss_dssp EECCSSCCCCC-G----------------------------GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred EECCCCccCCC-h----------------------------hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcC
Confidence 99988887631 1 234567889999999998853 4688899999999999
Q ss_pred CcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcce
Q 040109 428 NNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFS 479 (598)
Q Consensus 428 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 479 (598)
|++++..|..+..+++|++|++++|++++..| +..+++|++|++++|+++
T Consensus 297 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 297 NQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 99998888889999999999999999987666 888999999999999875
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=7e-34 Score=300.79 Aligned_cols=331 Identities=20% Similarity=0.175 Sum_probs=241.3
Q ss_pred CcEEEEEcCCCCCCCCCCCceecCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCC
Q 040109 82 GHVLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLS 161 (598)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 161 (598)
.+++.+++++ +.+++ +| .+..+++|++|++++|.+++ +| ++.+++|++|++++|.+++. + +++++
T Consensus 42 ~~L~~L~Ls~------n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~ 106 (457)
T 3bz5_A 42 ATLTSLDCHN------SSITD-MT-GIEKLTGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTNL-D--VTPLT 106 (457)
T ss_dssp TTCCEEECCS------SCCCC-CT-TGGGCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCC-C--CTTCT
T ss_pred CCCCEEEccC------CCccc-Ch-hhcccCCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCcee-e--cCCCC
Confidence 4678899988 67776 34 68999999999999999986 44 88899999999999999864 3 88999
Q ss_pred CCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCc
Q 040109 162 RLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSL 241 (598)
Q Consensus 162 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L 241 (598)
+|++|++++|++.. . + +..+++|++|++++|.++++ .+..+++|++|++++|...+..+ +.. . ++|
T Consensus 107 ~L~~L~L~~N~l~~-l--~-~~~l~~L~~L~l~~N~l~~l-----~l~~l~~L~~L~l~~n~~~~~~~--~~~--l-~~L 172 (457)
T 3bz5_A 107 KLTYLNCDTNKLTK-L--D-VSQNPLLTYLNCARNTLTEI-----DVSHNTQLTELDCHLNKKITKLD--VTP--Q-TQL 172 (457)
T ss_dssp TCCEEECCSSCCSC-C--C-CTTCTTCCEEECTTSCCSCC-----CCTTCTTCCEEECTTCSCCCCCC--CTT--C-TTC
T ss_pred cCCEEECCCCcCCe-e--c-CCCCCcCCEEECCCCcccee-----ccccCCcCCEEECCCCCcccccc--ccc--C-CcC
Confidence 99999999998733 2 2 88999999999999999885 27789999999999996544432 322 2 899
Q ss_pred cEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEccc
Q 040109 242 EVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSY 321 (598)
Q Consensus 242 ~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~ 321 (598)
++|++++|.+++ +| +..++. |+.|++++|.+++. .+..+++|++|++++|+++++| +..+++|+.|++++
T Consensus 173 ~~L~ls~n~l~~-l~--l~~l~~--L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 173 TTLDCSFNKITE-LD--VSQNKL--LNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSV 242 (457)
T ss_dssp CEEECCSSCCCC-CC--CTTCTT--CCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCS
T ss_pred CEEECCCCccce-ec--cccCCC--CCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeC
Confidence 999999999987 34 777777 99999999999875 3788899999999999999987 78899999999999
Q ss_pred CcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEec
Q 040109 322 NELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDL 401 (598)
Q Consensus 322 n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 401 (598)
|++++..+..+..+..-.....+|+.|++++|.+.+.+| .+.+++|+.|++
T Consensus 243 N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-----------------------------~~~l~~L~~L~L 293 (457)
T 3bz5_A 243 NPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-----------------------------AEGCRKIKELDV 293 (457)
T ss_dssp SCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-----------------------------CTTCTTCCCCCC
T ss_pred CcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc-----------------------------ccccccCCEEEC
Confidence 999987654443322111112234444455554444333 123456666666
Q ss_pred cCCcCCCcCchh--------hhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccc-----------
Q 040109 402 SSNKLGGEVPEE--------IMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSL----------- 462 (598)
Q Consensus 402 s~n~l~~~~p~~--------l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l----------- 462 (598)
++|...+.+|.. +..+++|++|++++|++++ ++ ++.+++|+.|++++|++++. + .+
T Consensus 294 s~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~l-~-~L~~L~l~~n~l~ 368 (457)
T 3bz5_A 294 THNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQDF-S-SVGKIPALNNNFE 368 (457)
T ss_dssp TTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCBC-T-TGGGSSGGGTSEE
T ss_pred CCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCCc-c-ccccccccCCcEE
Confidence 666655444431 3445566677777777765 22 66666777777777766642 1 11
Q ss_pred --cCCCCCCEEeCCCCcceecCCCC
Q 040109 463 --SRLRLLSVMDLSYNNFSGKIPKG 485 (598)
Q Consensus 463 --~~l~~L~~L~ls~N~l~~~~p~~ 485 (598)
.++..|..+++++|+++|.+|..
T Consensus 369 g~~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 369 AEGQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp EEEEEEECCCBCCBTTBEEEECCTT
T ss_pred ecceeeecCccccccCcEEEEcChh
Confidence 12345777888888888888864
No 35
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.1e-33 Score=310.98 Aligned_cols=382 Identities=21% Similarity=0.220 Sum_probs=280.0
Q ss_pred CcEEEEEcCCCCCCCCCCCceecCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCC
Q 040109 82 GHVLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLS 161 (598)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 161 (598)
.+++.|||++ +.+++..+.+|.++++|++|+|++|.+++. .+..|.++++|++|+|++|++++..+..|++++
T Consensus 76 ~~L~~L~Ls~------N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~ 148 (635)
T 4g8a_A 76 PELQVLDLSR------CEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 148 (635)
T ss_dssp TTCCEEECTT------CCCCEECTTTTTTCTTCCEEECTTCCCCEE-CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCT
T ss_pred CCCCEEECCC------CcCCCcChhHhcCCCCCCEEEccCCcCCCC-CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCc
Confidence 4678899988 788887777899999999999999999964 456789999999999999999987778899999
Q ss_pred CCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCC----cEEeccCcCCCCCCCChh-----
Q 040109 162 RLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSL----TTLYLGHCDLPPISTPSL----- 232 (598)
Q Consensus 162 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L----~~L~l~~n~l~~~~~~~~----- 232 (598)
+|++|++++|.+.....+..+..+++|++|++++|++++++. ..+..+.++ ..++++.|.+....+..+
T Consensus 149 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~ 226 (635)
T 4g8a_A 149 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC--TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 226 (635)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG--GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEE
T ss_pred ccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc--ccccchhhhhhhhhhhhcccCcccccCcccccchhh
Confidence 999999999998555566778999999999999999887532 222222211 123333332221111000
Q ss_pred --------------------------------------------------------------------------------
Q 040109 233 -------------------------------------------------------------------------------- 232 (598)
Q Consensus 233 -------------------------------------------------------------------------------- 232 (598)
T Consensus 227 ~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 306 (635)
T 4g8a_A 227 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLT 306 (635)
T ss_dssp EEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGT
T ss_pred hhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhc
Confidence
Q ss_pred ---------------hhccccCCccEEEccCCCCCCCcch-------------------hhhhcCccCccEEEccCCccc
Q 040109 233 ---------------LHLNYSKSLEVIDLSNNYLTNSIYP-------------------WLLNVSSNLVDHIDLGSNRLH 278 (598)
Q Consensus 233 ---------------~~~~~~~~L~~L~Ls~n~l~~~~~~-------------------~l~~~~~~~L~~L~L~~n~l~ 278 (598)
........++.|++.+|.+....+. ....++. ++.|++++|.+.
T Consensus 307 ~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~--L~~L~ls~n~l~ 384 (635)
T 4g8a_A 307 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS--LEFLDLSRNGLS 384 (635)
T ss_dssp TCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTT--CCEEECCSSCCB
T ss_pred ccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccc--cccchhhccccc
Confidence 0000123566666666655432211 1223455 899999999875
Q ss_pred c--ccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchh-hhhhhcCCCCCCCCCCCEEEccCccc
Q 040109 279 G--SIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELS-EFIQNVSSGSTKNSSLEWLYLASNEI 355 (598)
Q Consensus 279 ~--~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~g~~~~~~L~~L~Ls~N~l 355 (598)
. ..+..+..+.+|+++++..|....++..+..+++|+.++++.|......+ ..+..+. +++.++++.|.+
T Consensus 385 ~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~-------~l~~l~ls~n~l 457 (635)
T 4g8a_A 385 FKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR-------NLIYLDISHTHT 457 (635)
T ss_dssp EEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT-------TCCEEECTTSCC
T ss_pred cccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccc-------cccccccccccc
Confidence 3 45566677788888888888777766667777888888887776654433 2344444 777788888777
Q ss_pred cccCCC-CCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccC
Q 040109 356 TGTIPN-LGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQI 434 (598)
Q Consensus 356 ~~~~p~-l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 434 (598)
.+..|. +..++.+.......+.. ..+..+..+..+++|++|||++|++++..|..|.++++|++|+|++|++++..
T Consensus 458 ~~~~~~~~~~~~~L~~L~Ls~N~~---~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~ 534 (635)
T 4g8a_A 458 RVAFNGIFNGLSSLEVLKMAGNSF---QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 534 (635)
T ss_dssp EECCTTTTTTCTTCCEEECTTCEE---GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred ccccccccccchhhhhhhhhhccc---ccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCC
Confidence 766554 23334443332222111 01122345677889999999999999999999999999999999999999888
Q ss_pred CcccCCCCCCCeeeCCCCccCCCCcccccCC-CCCCEEeCCCCcceecCCC
Q 040109 435 TPRIGQLKSLDFLDLSINHFFGGIPSSLSRL-RLLSVMDLSYNNFSGKIPK 484 (598)
Q Consensus 435 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~p~ 484 (598)
|..|.++++|++|||++|++++..|+.+.++ ++|++|++++|++.+.+..
T Consensus 535 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 535 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp CGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred hhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 8999999999999999999999999999988 6899999999999987764
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=8.2e-34 Score=295.27 Aligned_cols=314 Identities=20% Similarity=0.203 Sum_probs=268.5
Q ss_pred CCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCC
Q 040109 135 SLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSL 214 (598)
Q Consensus 135 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L 214 (598)
.++++++|++++|.++...+..|..+++|++|++++|.+ ....+..+.++++|++|++++|.+.+++. ..+..+++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L 119 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPP--HVFQNVPLL 119 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcc-cccChhhccCCCCcCEEECCCCCCCcCCH--HHhcCCCCC
Confidence 368999999999999865555678999999999999997 44455679999999999999999998743 678999999
Q ss_pred cEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEE
Q 040109 215 TTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYL 294 (598)
Q Consensus 215 ~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 294 (598)
++|++++|.++..++..+... ++|++|++++|.+++..+..+..+++ |++|++++|.+++. .+..+++|++|
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~~~---~~~~l~~L~~L 191 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNT---PKLTTLSMSNNNLERIEDDTFQATTS--LQNLQLSSNRLTHV---DLSLIPSLFHA 191 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTC---TTCCEEECCSSCCCBCCTTTTSSCTT--CCEEECCSSCCSBC---CGGGCTTCSEE
T ss_pred CEEECCCCccCcCCHHHhcCC---CCCcEEECCCCccCccChhhccCCCC--CCEEECCCCcCCcc---cccccccccee
Confidence 999999999998776444333 89999999999999888888999999 99999999999865 35678999999
Q ss_pred eeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCcccccc
Q 040109 295 GLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIY 374 (598)
Q Consensus 295 ~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~ 374 (598)
++++|.++.++ ..++|+.|++++|.+....... . ++|+.|++++|.+++.
T Consensus 192 ~l~~n~l~~~~----~~~~L~~L~l~~n~l~~~~~~~---~-------~~L~~L~l~~n~l~~~---------------- 241 (390)
T 3o6n_A 192 NVSYNLLSTLA----IPIAVEELDASHNSINVVRGPV---N-------VELTILKLQHNNLTDT---------------- 241 (390)
T ss_dssp ECCSSCCSEEE----CCSSCSEEECCSSCCCEEECCC---C-------SSCCEEECCSSCCCCC----------------
T ss_pred ecccccccccC----CCCcceEEECCCCeeeeccccc---c-------ccccEEECCCCCCccc----------------
Confidence 99999998754 3468999999999998763322 1 3899999999998742
Q ss_pred ccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCcc
Q 040109 375 FDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHF 454 (598)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 454 (598)
..+..+++|++|++++|.+++..|..+..+++|++|++++|+++ .+|..+..+++|++|++++|++
T Consensus 242 -------------~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l 307 (390)
T 3o6n_A 242 -------------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL 307 (390)
T ss_dssp -------------GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCC
T ss_pred -------------HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcc
Confidence 23456788999999999999888999999999999999999999 4677788899999999999999
Q ss_pred CCCCcccccCCCCCCEEeCCCCcceecCCCCCccCccCCCccCCCCCCCCCC
Q 040109 455 FGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLP 506 (598)
Q Consensus 455 ~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~gnp~lC~~~ 506 (598)
+ .+|..+..+++|++|++++|+++. +| ...+++++.+++.+||+.|++.
T Consensus 308 ~-~~~~~~~~l~~L~~L~L~~N~i~~-~~-~~~~~~L~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 308 L-HVERNQPQFDRLENLYLDHNSIVT-LK-LSTHHTLKNLTLSHNDWDCNSL 356 (390)
T ss_dssp C-CCGGGHHHHTTCSEEECCSSCCCC-CC-CCTTCCCSEEECCSSCEEHHHH
T ss_pred e-ecCccccccCcCCEEECCCCccce-eC-chhhccCCEEEcCCCCccchhH
Confidence 8 677788899999999999999984 45 4567889999999999999754
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=7.7e-33 Score=292.79 Aligned_cols=312 Identities=19% Similarity=0.153 Sum_probs=261.9
Q ss_pred cCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCccccc
Q 040109 104 INPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLS 183 (598)
Q Consensus 104 l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~ 183 (598)
.+.+++++++|++|++++|.+++ +| .++.+++|++|++++|.+++. | ++.+++|++|++++|.+... .+.
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~----~~~ 103 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL----DVT 103 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC----CCT
T ss_pred cccChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee----ecC
Confidence 34467889999999999999996 55 688999999999999999964 4 89999999999999998432 288
Q ss_pred CCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcC
Q 040109 184 YLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVS 263 (598)
Q Consensus 184 ~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~ 263 (598)
++++|++|++++|.+++++ +..+++|++|++++|++++.. +. .. ++|++|++++|...+.+ .+..++
T Consensus 104 ~l~~L~~L~L~~N~l~~l~-----~~~l~~L~~L~l~~N~l~~l~---l~--~l-~~L~~L~l~~n~~~~~~--~~~~l~ 170 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARNTLTEID---VS--HN-TQLTELDCHLNKKITKL--DVTPQT 170 (457)
T ss_dssp TCTTCCEEECCSSCCSCCC-----CTTCTTCCEEECTTSCCSCCC---CT--TC-TTCCEEECTTCSCCCCC--CCTTCT
T ss_pred CCCcCCEEECCCCcCCeec-----CCCCCcCCEEECCCCccceec---cc--cC-CcCCEEECCCCCccccc--ccccCC
Confidence 9999999999999999852 789999999999999999863 22 22 89999999999766665 467778
Q ss_pred ccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCC
Q 040109 264 SNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNS 343 (598)
Q Consensus 264 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~ 343 (598)
. |++|++++|.+++ +| +..+++|++|++++|++++++ +..+++|+.|++++|++++. | +..++
T Consensus 171 ~--L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~i-p--~~~l~------- 233 (457)
T 3bz5_A 171 Q--LTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEI-D--VTPLT------- 233 (457)
T ss_dssp T--CCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-C--CTTCT-------
T ss_pred c--CCEEECCCCccce-ec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCccccc-C--ccccC-------
Confidence 8 9999999999997 44 889999999999999999984 88899999999999999984 4 66666
Q ss_pred CCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEE
Q 040109 344 SLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVAL 423 (598)
Q Consensus 344 ~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 423 (598)
+|+.|++++|++++.. ++.++++.... -...+|+.|++++|.+.+.+| ++.+++|+.|
T Consensus 234 ~L~~L~l~~N~l~~~~--~~~l~~L~~L~------------------l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L 291 (457)
T 3bz5_A 234 QLTYFDCSVNPLTELD--VSTLSKLTTLH------------------CIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKEL 291 (457)
T ss_dssp TCSEEECCSSCCSCCC--CTTCTTCCEEE------------------CTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCC
T ss_pred CCCEEEeeCCcCCCcC--HHHCCCCCEEe------------------ccCCCCCEEECCCCccCCccc--ccccccCCEE
Confidence 8999999999999753 33444443211 112368899999999888887 5688999999
Q ss_pred ECcCCcCcccCCcc--------cCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCccee
Q 040109 424 NLSNNNLTGQITPR--------IGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFSG 480 (598)
Q Consensus 424 ~Ls~N~l~~~~p~~--------l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 480 (598)
++++|...+.+|.. +.++++|++|++++|++++. + +.++++|+.|++++|++++
T Consensus 292 ~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 292 DVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred ECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence 99999988777642 55668999999999999984 3 8999999999999999986
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.8e-32 Score=277.31 Aligned_cols=306 Identities=22% Similarity=0.349 Sum_probs=261.6
Q ss_pred cCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCC
Q 040109 133 IGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLR 212 (598)
Q Consensus 133 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~ 212 (598)
+..+++|++|++++|.+. .++ .+..+++|++|++++|.+.. . +.+..+++|++|++++|.++.+ ..+..++
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~--~-~~~~~l~~L~~L~L~~n~i~~~----~~~~~l~ 110 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITD--I-SPLSNLVKLTNLYIGTNKITDI----SALQNLT 110 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCC--C-GGGTTCTTCCEEECCSSCCCCC----GGGTTCT
T ss_pred chhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCcccc--c-hhhhcCCcCCEEEccCCcccCc----hHHcCCC
Confidence 456899999999999998 444 48899999999999998732 2 2289999999999999999986 3589999
Q ss_pred CCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCcc
Q 040109 213 SLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLR 292 (598)
Q Consensus 213 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 292 (598)
+|++|++++|.+.+..+ +.. +++|+.|++++|.....++. +..++. |++|++++|.+.+..+ +..+++|+
T Consensus 111 ~L~~L~l~~n~i~~~~~--~~~---l~~L~~L~l~~n~~~~~~~~-~~~l~~--L~~L~l~~~~~~~~~~--~~~l~~L~ 180 (347)
T 4fmz_A 111 NLRELYLNEDNISDISP--LAN---LTKMYSLNLGANHNLSDLSP-LSNMTG--LNYLTVTESKVKDVTP--IANLTDLY 180 (347)
T ss_dssp TCSEEECTTSCCCCCGG--GTT---CTTCCEEECTTCTTCCCCGG-GTTCTT--CCEEECCSSCCCCCGG--GGGCTTCS
T ss_pred cCCEEECcCCcccCchh--hcc---CCceeEEECCCCCCcccccc-hhhCCC--CcEEEecCCCcCCchh--hccCCCCC
Confidence 99999999999988654 332 38999999999976655444 888888 9999999999986544 88999999
Q ss_pred EEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCcccc
Q 040109 293 YLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPL 372 (598)
Q Consensus 293 ~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~ 372 (598)
+|++++|.+++++. +..+++|+.|++++|.+.+..+ +..++ +|+.|++++|.+++..+
T Consensus 181 ~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~-------~L~~L~l~~n~l~~~~~------------ 238 (347)
T 4fmz_A 181 SLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMT-------RLNSLKIGNNKITDLSP------------ 238 (347)
T ss_dssp EEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCT-------TCCEEECCSSCCCCCGG------------
T ss_pred EEEccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCC-------cCCEEEccCCccCCCcc------------
Confidence 99999999999876 8899999999999999998766 66666 99999999999874321
Q ss_pred ccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCC
Q 040109 373 IYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSIN 452 (598)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 452 (598)
+..+++|++|++++|.+++ + +.+..+++|++|++++|++++. +.+..+++|++|++++|
T Consensus 239 -----------------~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 239 -----------------LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNN 297 (347)
T ss_dssp -----------------GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred -----------------hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCC
Confidence 3457789999999999985 3 4789999999999999999954 46889999999999999
Q ss_pred ccCCCCcccccCCCCCCEEeCCCCcceecCCCCCccCccCCCccCCCCC
Q 040109 453 HFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPE 501 (598)
Q Consensus 453 ~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~gnp~ 501 (598)
++++..|..+.++++|++|++++|++++..| ...+++++.+++.+|+.
T Consensus 298 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp CCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred cCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence 9999999999999999999999999997666 66788899999999874
No 39
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.3e-33 Score=296.62 Aligned_cols=330 Identities=24% Similarity=0.276 Sum_probs=158.5
Q ss_pred cEEEEEcCCCCCCCCCCCceecCccccCCCCCCEEECcCCCCCCCCcchhcCCCC-------------------------
Q 040109 83 HVLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLS------------------------- 137 (598)
Q Consensus 83 ~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~------------------------- 137 (598)
+++.+++++ +.+ |.+|++++++++|++|++++|.+.+. +|..++.++
T Consensus 12 ~L~~L~l~~------n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l 83 (454)
T 1jl5_A 12 FLQEPLRHS------SNL-TEMPVEAENVKSKTEYYNAWSEWERN-APPGNGEQREMAVSRLRDCLDRQAHELELNNLGL 83 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHT-SCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC
T ss_pred cchhhhccc------Cch-hhCChhHhcccchhhhhccCCccccc-CCcccccchhcchhhhhhhhccCCCEEEecCCcc
Confidence 445555555 444 55555555555555555555555443 555554444
Q ss_pred --------CCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhc
Q 040109 138 --------KLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLS 209 (598)
Q Consensus 138 --------~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~ 209 (598)
+|++|++++|.+++ +|.. +++|++|++++|.+.... . ..++|++|++++|.++++| .+.
T Consensus 84 ~~lp~~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~--~---~~~~L~~L~L~~n~l~~lp----~~~ 150 (454)
T 1jl5_A 84 SSLPELPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALS--D---LPPLLEYLGVSNNQLEKLP----ELQ 150 (454)
T ss_dssp SCCCSCCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCC--S---CCTTCCEEECCSSCCSSCC----CCT
T ss_pred ccCCCCcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCccc--C---CCCCCCEEECcCCCCCCCc----ccC
Confidence 44555555554443 3322 245555555555542110 0 0145666666666665543 255
Q ss_pred CCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCC
Q 040109 210 NLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMA 289 (598)
Q Consensus 210 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~ 289 (598)
.+++|++|++++|++++.+.. ..+|++|++++|.+++ +| .+..++. |++|++++|.+++ +|.. .+
T Consensus 151 ~l~~L~~L~l~~N~l~~lp~~-------~~~L~~L~L~~n~l~~-l~-~~~~l~~--L~~L~l~~N~l~~-l~~~---~~ 215 (454)
T 1jl5_A 151 NSSFLKIIDVDNNSLKKLPDL-------PPSLEFIAAGNNQLEE-LP-ELQNLPF--LTAIYADNNSLKK-LPDL---PL 215 (454)
T ss_dssp TCTTCCEEECCSSCCSCCCCC-------CTTCCEEECCSSCCSS-CC-CCTTCTT--CCEEECCSSCCSS-CCCC---CT
T ss_pred CCCCCCEEECCCCcCcccCCC-------cccccEEECcCCcCCc-Cc-cccCCCC--CCEEECCCCcCCc-CCCC---cC
Confidence 666666666666666553321 1456666666666664 33 3555555 6666666666654 3322 24
Q ss_pred CccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCc
Q 040109 290 SLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGML 369 (598)
Q Consensus 290 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~ 369 (598)
+|++|++++|.++.+|. +..+++|++|++++|++++. |.. .. +|+.|++++|++++ +|.. .+++.
T Consensus 216 ~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l-~~~---~~-------~L~~L~l~~N~l~~-l~~~--~~~L~ 280 (454)
T 1jl5_A 216 SLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTL-PDL---PP-------SLEALNVRDNYLTD-LPEL--PQSLT 280 (454)
T ss_dssp TCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSC-CSC---CT-------TCCEEECCSSCCSC-CCCC--CTTCC
T ss_pred cccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCcc-ccc---cc-------ccCEEECCCCcccc-cCcc--cCcCC
Confidence 66666666666666663 56666666666666666542 211 12 56666666666664 3321 12222
Q ss_pred cccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcc-cCCcEEECcCCcCcccCCcccCCCCCCCeee
Q 040109 370 MPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDL-VGLVALNLSNNNLTGQITPRIGQLKSLDFLD 448 (598)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 448 (598)
......+.+.. .....++|+.|++++|++++ ++ .+ ++|++|++++|++++ +|.. +++|++|+
T Consensus 281 ~L~ls~N~l~~--------l~~~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~ 343 (454)
T 1jl5_A 281 FLDVSENIFSG--------LSELPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLI 343 (454)
T ss_dssp EEECCSSCCSE--------ESCCCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEE
T ss_pred EEECcCCccCc--------ccCcCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEE
Confidence 22111111110 00112455566666665553 11 12 356666666666663 4443 35666666
Q ss_pred CCCCccCCCCcccccCCCCCCEEeCCCCccee--cCCC
Q 040109 449 LSINHFFGGIPSSLSRLRLLSVMDLSYNNFSG--KIPK 484 (598)
Q Consensus 449 Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~--~~p~ 484 (598)
+++|+++ .+|. .+++|++|++++|++++ .+|.
T Consensus 344 L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~ 377 (454)
T 1jl5_A 344 ASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPE 377 (454)
T ss_dssp CCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCT
T ss_pred CCCCccc-cccc---hhhhccEEECCCCCCCcCCCChH
Confidence 6666665 3444 35666666666666665 4443
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.8e-33 Score=305.35 Aligned_cols=313 Identities=20% Similarity=0.193 Sum_probs=270.8
Q ss_pred CCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCc
Q 040109 136 LSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLT 215 (598)
Q Consensus 136 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~ 215 (598)
+.+++.|++++|.+....+..|.++++|++|++++|.+ ....+..|..+++|++|+|++|.+++++. ..+..+++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~ 126 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPP--HVFQNVPLLT 126 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCC
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC-CCCChHHhcCCCCCCEEECCCCcCCCCCH--HHHcCCCCCC
Confidence 68999999999999976666788999999999999997 44455579999999999999999999743 6789999999
Q ss_pred EEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEe
Q 040109 216 TLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLG 295 (598)
Q Consensus 216 ~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 295 (598)
+|++++|.+++.++..+..+ ++|++|++++|.+++..|..+..+++ |+.|++++|.+++.. +..+++|+.|+
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~--L~~L~L~~N~l~~~~---~~~l~~L~~L~ 198 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNT---PKLTTLSMSNNNLERIEDDTFQATTS--LQNLQLSSNRLTHVD---LSLIPSLFHAN 198 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTC---TTCCEEECCSSCCCBCCTTTTTTCTT--CCEEECTTSCCSBCC---GGGCTTCSEEE
T ss_pred EEEeeCCCCCCCCHHHhccC---CCCCEEEeeCCcCCCCChhhhhcCCc--CcEEECcCCCCCCcC---hhhhhhhhhhh
Confidence 99999999998877544433 89999999999999888889999999 999999999998653 56778999999
Q ss_pred eccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccccccc
Q 040109 296 LLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYF 375 (598)
Q Consensus 296 Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~ 375 (598)
+++|.+++++ ..++|+.|++++|.+....+... ++|+.|++++|.+++.
T Consensus 199 l~~n~l~~l~----~~~~L~~L~ls~n~l~~~~~~~~----------~~L~~L~L~~n~l~~~----------------- 247 (597)
T 3oja_B 199 VSYNLLSTLA----IPIAVEELDASHNSINVVRGPVN----------VELTILKLQHNNLTDT----------------- 247 (597)
T ss_dssp CCSSCCSEEE----CCTTCSEEECCSSCCCEEECSCC----------SCCCEEECCSSCCCCC-----------------
T ss_pred cccCcccccc----CCchhheeeccCCcccccccccC----------CCCCEEECCCCCCCCC-----------------
Confidence 9999998754 35689999999999986544322 2899999999999852
Q ss_pred cceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccC
Q 040109 376 DKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFF 455 (598)
Q Consensus 376 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 455 (598)
..+..+++|+.|+|++|.+++.+|..|..+++|+.|+|++|++++ +|..+..+++|+.|+|++|.++
T Consensus 248 ------------~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~ 314 (597)
T 3oja_B 248 ------------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL 314 (597)
T ss_dssp ------------GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC
T ss_pred ------------hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC
Confidence 234567899999999999999999999999999999999999995 6778888999999999999998
Q ss_pred CCCcccccCCCCCCEEeCCCCcceecCCCCCccCccCCCccCCCCCCCCCC
Q 040109 456 GGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLP 506 (598)
Q Consensus 456 ~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~gnp~lC~~~ 506 (598)
.+|..+..+++|++|++++|++++. | ...++++..+.+.+||+.|+|.
T Consensus 315 -~i~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 315 -HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp -CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEEHHHH
T ss_pred -ccCcccccCCCCCEEECCCCCCCCc-C-hhhcCCCCEEEeeCCCCCChhH
Confidence 6888899999999999999999854 4 3467888999999999999753
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.9e-31 Score=281.82 Aligned_cols=323 Identities=24% Similarity=0.269 Sum_probs=166.0
Q ss_pred CCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCCEE
Q 040109 112 QHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRYL 191 (598)
Q Consensus 112 ~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L 191 (598)
++|++|++++|.+++ +|.. +++|++|++++|.+++ +|.. .++|++|++++|.+.. .+ .+.++++|++|
T Consensus 91 ~~L~~L~l~~n~l~~--lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~--lp-~~~~l~~L~~L 158 (454)
T 1jl5_A 91 PHLESLVASCNSLTE--LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK--LP-ELQNSSFLKII 158 (454)
T ss_dssp TTCSEEECCSSCCSS--CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS--CC-CCTTCTTCCEE
T ss_pred CCCCEEEccCCcCCc--cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC--Cc-ccCCCCCCCEE
Confidence 456666666666653 4432 3556666666666553 2211 1456666666665522 11 35666666666
Q ss_pred EcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEE
Q 040109 192 DLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHID 271 (598)
Q Consensus 192 ~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~ 271 (598)
++++|+++++|.. .++|++|++++|.+++.+. +... ++|++|++++|.+++ +|... .+ |++|+
T Consensus 159 ~l~~N~l~~lp~~------~~~L~~L~L~~n~l~~l~~--~~~l---~~L~~L~l~~N~l~~-l~~~~---~~--L~~L~ 221 (454)
T 1jl5_A 159 DVDNNSLKKLPDL------PPSLEFIAAGNNQLEELPE--LQNL---PFLTAIYADNNSLKK-LPDLP---LS--LESIV 221 (454)
T ss_dssp ECCSSCCSCCCCC------CTTCCEEECCSSCCSSCCC--CTTC---TTCCEEECCSSCCSS-CCCCC---TT--CCEEE
T ss_pred ECCCCcCcccCCC------cccccEEECcCCcCCcCcc--ccCC---CCCCEEECCCCcCCc-CCCCc---Cc--ccEEE
Confidence 6666666554331 2356666666666655331 2221 566666666666553 22211 23 66666
Q ss_pred ccCCccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEcc
Q 040109 272 LGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLA 351 (598)
Q Consensus 272 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls 351 (598)
+++|.++ .+|. ++.+++|++|++++|+++++|.. +++|+.|++++|++.+. |... + +|+.|+++
T Consensus 222 l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l-~~~~---~-------~L~~L~ls 285 (454)
T 1jl5_A 222 AGNNILE-ELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDL-PELP---Q-------SLTFLDVS 285 (454)
T ss_dssp CCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCC-CCCC---T-------TCCEEECC
T ss_pred CcCCcCC-cccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCccccc-Cccc---C-------cCCEEECc
Confidence 6666665 4442 55666666666666666655542 25566666666665542 2211 2 56666666
Q ss_pred CccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCc
Q 040109 352 SNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLT 431 (598)
Q Consensus 352 ~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 431 (598)
+|.+++. |.+. +++.......+.+.. .....++|+.|++++|++++ +|.. +++|++|++++|+++
T Consensus 286 ~N~l~~l-~~~~--~~L~~L~l~~N~l~~--------i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~ 350 (454)
T 1jl5_A 286 ENIFSGL-SELP--PNLYYLNASSNEIRS--------LCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA 350 (454)
T ss_dssp SSCCSEE-SCCC--TTCCEEECCSSCCSE--------ECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred CCccCcc-cCcC--CcCCEEECcCCcCCc--------ccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc
Confidence 6665541 1110 122211111111110 00113589999999999995 6654 589999999999999
Q ss_pred ccCCcccCCCCCCCeeeCCCCccCC--CCcccccCC-------------CCCCEEeCCCCccee--cCCCCCccCccCCC
Q 040109 432 GQITPRIGQLKSLDFLDLSINHFFG--GIPSSLSRL-------------RLLSVMDLSYNNFSG--KIPKGTQLQRFGAS 494 (598)
Q Consensus 432 ~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l-------------~~L~~L~ls~N~l~~--~~p~~~~~~~l~~~ 494 (598)
.+|. .+++|++|++++|++++ .+|..+.++ ++|++|++++|++++ .+|. ++..+
T Consensus 351 -~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~-----sl~~L 421 (454)
T 1jl5_A 351 -EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE-----SVEDL 421 (454)
T ss_dssp -CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------------------------
T ss_pred -cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh-----hHhhe
Confidence 5776 47899999999999998 788888877 889999999999987 6664 35555
Q ss_pred ccCCCCCCC
Q 040109 495 TYAGNPELC 503 (598)
Q Consensus 495 ~~~gnp~lC 503 (598)
.+.+|...|
T Consensus 422 ~~~~~~~~~ 430 (454)
T 1jl5_A 422 RMNSERVVD 430 (454)
T ss_dssp ---------
T ss_pred eCcCcccCC
Confidence 666665544
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=1.1e-30 Score=265.10 Aligned_cols=289 Identities=21% Similarity=0.205 Sum_probs=216.6
Q ss_pred CCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCCEEE
Q 040109 113 HLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRYLD 192 (598)
Q Consensus 113 ~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~ 192 (598)
+++.++++++.++. +|..+. ++|++|++++|.+++..+..|+++++|++|++++|.+ ....+..+.++++|++|+
T Consensus 32 ~l~~l~~~~~~l~~--lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLEK--VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI-SKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCCS--CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC-CCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCCCccc--cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcC-CeeCHHHhcCCCCCCEEE
Confidence 67888888888873 666553 6788888888888876666788888888888888876 333344566666666666
Q ss_pred cCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEEc
Q 040109 193 LGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDL 272 (598)
Q Consensus 193 L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L 272 (598)
+++|.++.++. .+ . ++|++|++++|.+++..+..+..++. |+.|++
T Consensus 107 Ls~n~l~~l~~---~~--------------------------~---~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l 152 (330)
T 1xku_A 107 LSKNQLKELPE---KM--------------------------P---KTLQELRVHENEITKVRKSVFNGLNQ--MIVVEL 152 (330)
T ss_dssp CCSSCCSBCCS---SC--------------------------C---TTCCEEECCSSCCCBBCHHHHTTCTT--CCEEEC
T ss_pred CCCCcCCccCh---hh--------------------------c---ccccEEECCCCcccccCHhHhcCCcc--ccEEEC
Confidence 66666654322 10 0 46667777777776655666777777 888888
Q ss_pred cCCcccc--ccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEc
Q 040109 273 GSNRLHG--SIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYL 350 (598)
Q Consensus 273 ~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~L 350 (598)
++|.+.. ..+..+..+++|++|++++|.++.+|..+. ++|++|++++|.+.+..|..+..++ +|+.|++
T Consensus 153 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~-------~L~~L~L 223 (330)
T 1xku_A 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLN-------NLAKLGL 223 (330)
T ss_dssp CSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCT-------TCCEEEC
T ss_pred CCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCC-------CCCEEEC
Confidence 8887753 567778888899999999999888876554 7899999999999888888888877 8999999
Q ss_pred cCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcC
Q 040109 351 ASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNL 430 (598)
Q Consensus 351 s~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 430 (598)
++|.+++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++
T Consensus 224 s~n~l~~~~~---------------------------~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 224 SFNSISAVDN---------------------------GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp CSSCCCEECT---------------------------TTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCC
T ss_pred CCCcCceeCh---------------------------hhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcC
Confidence 9998876443 12345678899999999998 7888889999999999999999
Q ss_pred cccCCcccCC------CCCCCeeeCCCCccCC--CCcccccCCCCCCEEeCCCCc
Q 040109 431 TGQITPRIGQ------LKSLDFLDLSINHFFG--GIPSSLSRLRLLSVMDLSYNN 477 (598)
Q Consensus 431 ~~~~p~~l~~------l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~ 477 (598)
++..+..|.. .+.|+.|++++|.+.. ..|..|..++.++.+++++|+
T Consensus 276 ~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 276 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 9766666654 3788899999998853 556788889999999999885
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=4.9e-31 Score=268.05 Aligned_cols=288 Identities=23% Similarity=0.234 Sum_probs=198.0
Q ss_pred CCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCCEEE
Q 040109 113 HLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRYLD 192 (598)
Q Consensus 113 ~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~ 192 (598)
+++.++++++.++. +|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+ ....+..+.++++|++|+
T Consensus 34 ~l~~l~~~~~~l~~--ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA--VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI-SKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCSS--CCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCccc--cCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCcc-CccCHhHhhCcCCCCEEE
Confidence 67888888888773 666553 6788888888888766667788888888888888876 333345566677777777
Q ss_pred cCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEEc
Q 040109 193 LGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDL 272 (598)
Q Consensus 193 L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L 272 (598)
+++|.++.++. .+. ++ |++|++++|.+++..+..+..+++ |+.|++
T Consensus 109 L~~n~l~~l~~---~~~--~~---------------------------L~~L~l~~n~i~~~~~~~~~~l~~--L~~L~l 154 (332)
T 2ft3_A 109 ISKNHLVEIPP---NLP--SS---------------------------LVELRIHDNRIRKVPKGVFSGLRN--MNCIEM 154 (332)
T ss_dssp CCSSCCCSCCS---SCC--TT---------------------------CCEEECCSSCCCCCCSGGGSSCSS--CCEEEC
T ss_pred CCCCcCCccCc---ccc--cc---------------------------CCEEECCCCccCccCHhHhCCCcc--CCEEEC
Confidence 77776665432 111 34 445555555554433344455555 666666
Q ss_pred cCCccc--cccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEc
Q 040109 273 GSNRLH--GSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYL 350 (598)
Q Consensus 273 ~~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~L 350 (598)
++|.++ +..+..+..+ +|++|++++|.++++|..+. ++|++|++++|.+.+..+..+..++ +|+.|++
T Consensus 155 ~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~-------~L~~L~L 224 (332)
T 2ft3_A 155 GGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYS-------KLYRLGL 224 (332)
T ss_dssp CSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCT-------TCSCCBC
T ss_pred CCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCC-------CCCEEEC
Confidence 666654 2455556666 77777777777777765543 6777777777777777766676666 7777777
Q ss_pred cCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcC
Q 040109 351 ASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNL 430 (598)
Q Consensus 351 s~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 430 (598)
++|.+++..+ ..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++
T Consensus 225 ~~N~l~~~~~---------------------------~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 225 GHNQIRMIEN---------------------------GSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276 (332)
T ss_dssp CSSCCCCCCT---------------------------TGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCC
T ss_pred CCCcCCcCCh---------------------------hHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCC
Confidence 7777765332 12345667888888888888 7788888899999999999999
Q ss_pred cccCCcccCCC------CCCCeeeCCCCccC--CCCcccccCCCCCCEEeCCCCc
Q 040109 431 TGQITPRIGQL------KSLDFLDLSINHFF--GGIPSSLSRLRLLSVMDLSYNN 477 (598)
Q Consensus 431 ~~~~p~~l~~l------~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~ls~N~ 477 (598)
++..+..|... ..|+.|++++|.+. +..|..|..+++|+.+++++|+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 277 TKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 87666666543 67889999999887 5677788889999999998885
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=3.2e-32 Score=275.75 Aligned_cols=272 Identities=17% Similarity=0.243 Sum_probs=188.5
Q ss_pred cCCcHHHHHHHHHHHhcCC-CCCCCCCCCCC-CCCCCCCCCccCeeeCC--------CCCcEEEEEcCCCCCCCCCCCce
Q 040109 33 ISCLDEEKEALLAFKQGLI-DESGILSSWGR-EDEKRNCCKWRGVRCSN--------KTGHVLGLDLRALSDSPVDALKG 102 (598)
Q Consensus 33 ~~~~~~~~~~l~~~k~~~~-~~~~~l~~W~~-~~~~~~~c~w~gv~C~~--------~~~~v~~l~l~~~~~~~~~~l~g 102 (598)
..+..+|+.||++||+++. ++.+.+.+|.. .....++|.|.|+.|+. ..++|+.+++++ +.+.
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~------n~l~- 94 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS------VPLP- 94 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEES------SCCS-
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccC------CCch-
Confidence 4567889999999999985 66667788931 01366799999999952 346788999988 6676
Q ss_pred ecCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccc
Q 040109 103 TINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWL 182 (598)
Q Consensus 103 ~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l 182 (598)
.+|+.++++++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..++++++|++|++++|.+.. ..+..+
T Consensus 95 ~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~-~~p~~~ 170 (328)
T 4fcg_A 95 QFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT-ELPEPL 170 (328)
T ss_dssp SCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCC-CCCSCS
T ss_pred hcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCcc-ccChhH
Confidence 78888888999999999999998 38888889999999999999998 778889999999999999987633 223222
Q ss_pred ---------cCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCC
Q 040109 183 ---------SYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTN 253 (598)
Q Consensus 183 ---------~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 253 (598)
.++++|++|++++|.++.+ +..+..+++|++|++++|.+++.++. +. . +++|++|++++|.+.+
T Consensus 171 ~~~~~~~~~~~l~~L~~L~L~~n~l~~l---p~~l~~l~~L~~L~L~~N~l~~l~~~-l~--~-l~~L~~L~Ls~n~~~~ 243 (328)
T 4fcg_A 171 ASTDASGEHQGLVNLQSLRLEWTGIRSL---PASIANLQNLKSLKIRNSPLSALGPA-IH--H-LPKLEELDLRGCTALR 243 (328)
T ss_dssp EEEC-CCCEEESTTCCEEEEEEECCCCC---CGGGGGCTTCCEEEEESSCCCCCCGG-GG--G-CTTCCEEECTTCTTCC
T ss_pred hhccchhhhccCCCCCEEECcCCCcCcc---hHhhcCCCCCCEEEccCCCCCcCchh-hc--c-CCCCCEEECcCCcchh
Confidence 3467777777777776653 34566666677777776666654331 11 1 2566666666666666
Q ss_pred CcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCC-cchhhcCCCCCcEEEcccCcC
Q 040109 254 SIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLRE-VPKFLGNMSSLKMLVLSYNEL 324 (598)
Q Consensus 254 ~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l 324 (598)
.+|..+..+++ |++|++++|.+.+.+|..+..+++|++|++++|++.+ +|..+.++++|+.+++..+.+
T Consensus 244 ~~p~~~~~l~~--L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 244 NYPPIFGGRAP--LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp BCCCCTTCCCC--CCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred hhHHHhcCCCC--CCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 66655555555 6666666665555566555566666666666655544 555556666666665555443
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3e-30 Score=262.22 Aligned_cols=240 Identities=24% Similarity=0.267 Sum_probs=169.8
Q ss_pred EEEEEcCCCCCCCCCCCceecCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCC
Q 040109 84 VLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRL 163 (598)
Q Consensus 84 v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 163 (598)
++.+++++ +.+. .+|..+. ++|++|++++|.+++. .|..+..+++|++|++++|.+++..|..|+++++|
T Consensus 35 l~~l~~~~------~~l~-~ip~~~~--~~l~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 104 (332)
T 2ft3_A 35 LRVVQCSD------LGLK-AVPKEIS--PDTTLLDLQNNDISEL-RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104 (332)
T ss_dssp TTEEECCS------SCCS-SCCSCCC--TTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred CCEEECCC------CCcc-ccCCCCC--CCCeEEECCCCcCCcc-CHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence 45677776 4554 5676653 6899999999999974 56789999999999999999998889999999999
Q ss_pred CEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCC--CCCChhhhccccCCc
Q 040109 164 QVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPP--ISTPSLLHLNYSKSL 241 (598)
Q Consensus 164 ~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~~~~L 241 (598)
++|++++|.+. .. +..+. ++|++|++++|.+..++. ..+..+++|++|++++|.++. ..+..+. . .+|
T Consensus 105 ~~L~L~~n~l~-~l-~~~~~--~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~---~-l~L 174 (332)
T 2ft3_A 105 QKLYISKNHLV-EI-PPNLP--SSLVELRIHDNRIRKVPK--GVFSGLRNMNCIEMGGNPLENSGFEPGAFD---G-LKL 174 (332)
T ss_dssp CEEECCSSCCC-SC-CSSCC--TTCCEEECCSSCCCCCCS--GGGSSCSSCCEEECCSCCCBGGGSCTTSSC---S-CCC
T ss_pred CEEECCCCcCC-cc-Ccccc--ccCCEEECCCCccCccCH--hHhCCCccCCEEECCCCccccCCCCccccc---C-Ccc
Confidence 99999999983 22 22222 899999999999998754 678899999999999998864 3332221 1 167
Q ss_pred cEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcc-hhhcCCCCCcEEEcc
Q 040109 242 EVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVP-KFLGNMSSLKMLVLS 320 (598)
Q Consensus 242 ~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls 320 (598)
+.|++++|.+++ +|..+. +. |++|++++|.+++..+..+..+++|++|++++|++++++ ..+..+++|++|+++
T Consensus 175 ~~L~l~~n~l~~-l~~~~~--~~--L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 249 (332)
T 2ft3_A 175 NYLRISEAKLTG-IPKDLP--ET--LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD 249 (332)
T ss_dssp SCCBCCSSBCSS-CCSSSC--SS--CSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECC
T ss_pred CEEECcCCCCCc-cCcccc--CC--CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECC
Confidence 777777777764 343332 33 666666666666655566666666666666666666633 356666666666666
Q ss_pred cCcCccchhhhhhhcCCCCCCCCCCCEEEccCcccc
Q 040109 321 YNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEIT 356 (598)
Q Consensus 321 ~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~ 356 (598)
+|+++ .+|..+..++ +|+.|++++|+++
T Consensus 250 ~N~l~-~lp~~l~~l~-------~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 250 NNKLS-RVPAGLPDLK-------LLQVVYLHTNNIT 277 (332)
T ss_dssp SSCCC-BCCTTGGGCT-------TCCEEECCSSCCC
T ss_pred CCcCe-ecChhhhcCc-------cCCEEECCCCCCC
Confidence 66665 3344455444 5555555555555
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=7.5e-33 Score=294.66 Aligned_cols=361 Identities=23% Similarity=0.191 Sum_probs=269.0
Q ss_pred CcEEEEEcCCCCCCCCCCCceecCcc-ccCCCCCCEEECcCCCCCCC---CcchhcCCCCCCCEEECCCCCCCCCCcccc
Q 040109 82 GHVLGLDLRALSDSPVDALKGTINPS-LLKLQHLTYLDLSWNNFSGS---PIPEFIGSLSKLSELALSSAQLAGPIPHQL 157 (598)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~l~g~l~~~-l~~l~~L~~L~Ls~n~l~~~---~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l 157 (598)
.+++.+|+++ +.++...... +..+++|++|++++|.++.. .++..+..+++|++|++++|.+++..+..+
T Consensus 3 ~~l~~L~Ls~------~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 76 (461)
T 1z7x_W 3 LDIQSLDIQC------EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCV 76 (461)
T ss_dssp EEEEEEEEES------CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHH
T ss_pred ccceehhhhh------cccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHH
Confidence 3578899987 5665433333 77889999999999998742 256778889999999999999875444333
Q ss_pred -CCCC----CCCEEEccCCCCCCC---CCcccccCCCCCCEEEcCCCcCCCC--CchhHh-hcCCCCCcEEeccCcCCCC
Q 040109 158 -GNLS----RLQVLDLRFNNLFSS---GNLDWLSYLSSLRYLDLGDCKLSKF--SNWFQV-LSNLRSLTTLYLGHCDLPP 226 (598)
Q Consensus 158 -~~l~----~L~~L~Ls~n~l~~~---~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~-l~~l~~L~~L~l~~n~l~~ 226 (598)
..++ +|++|++++|.+... ..+..+..+++|++|++++|.+.+. ..+... ....++|++|++++|++++
T Consensus 77 ~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 156 (461)
T 1z7x_W 77 LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 156 (461)
T ss_dssp HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred HHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence 2344 799999999987321 1245688999999999999998753 111112 2235689999999998876
Q ss_pred CCCChhh-hccccCCccEEEccCCCCCCCcchhhhh-----cCccCccEEEccCCccccc----cchhhcCCCCccEEee
Q 040109 227 ISTPSLL-HLNYSKSLEVIDLSNNYLTNSIYPWLLN-----VSSNLVDHIDLGSNRLHGS----IPVAFGHMASLRYLGL 296 (598)
Q Consensus 227 ~~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~l~~-----~~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L 296 (598)
.....+. .+...++|++|++++|.+++..+..+.. .+. |++|++++|.+++. ++..+..+++|++|++
T Consensus 157 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~--L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 234 (461)
T 1z7x_W 157 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ--LEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234 (461)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCC--CCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCC--ceEEEccCCCCcHHHHHHHHHHHHhCCCccEEec
Confidence 5422111 1122389999999999987655544443 345 99999999999864 5777888999999999
Q ss_pred ccCCCCCc------chhhcCCCCCcEEEcccCcCccc----hhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCC
Q 040109 297 LSNRLREV------PKFLGNMSSLKMLVLSYNELRGE----LSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFP 366 (598)
Q Consensus 297 s~n~l~~l------p~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~ 366 (598)
++|.+++. +..+..+++|++|++++|.+++. ++..+..++ +|++|++++|.+++..+.
T Consensus 235 s~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-------~L~~L~Ls~n~i~~~~~~----- 302 (461)
T 1z7x_W 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE-------SLKELSLAGNELGDEGAR----- 302 (461)
T ss_dssp CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT-------TCCEEECTTCCCHHHHHH-----
T ss_pred cCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCC-------CcceEECCCCCCchHHHH-----
Confidence 99998762 22334689999999999999875 566676677 899999999998742110
Q ss_pred cCccccccccceEEEEcCCccc-ccccccccceEeccCCcCCCc----CchhhhcccCCcEEECcCCcCcccCCcccCC-
Q 040109 367 GMLMPLIYFDKITVTWKGGQYE-YKSILGLIKIIDLSSNKLGGE----VPEEIMDLVGLVALNLSNNNLTGQITPRIGQ- 440 (598)
Q Consensus 367 ~l~~~~~~~~~~~~~~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~- 440 (598)
.... .....++|+.|++++|.+++. ++..+..+++|++|++++|++++..+..+..
T Consensus 303 ------------------~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 364 (461)
T 1z7x_W 303 ------------------LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 364 (461)
T ss_dssp ------------------HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHH
T ss_pred ------------------HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHH
Confidence 0000 011235899999999999865 5667778899999999999998765554442
Q ss_pred ----CCCCCeeeCCCCccCC----CCcccccCCCCCCEEeCCCCccee
Q 040109 441 ----LKSLDFLDLSINHFFG----GIPSSLSRLRLLSVMDLSYNNFSG 480 (598)
Q Consensus 441 ----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~ls~N~l~~ 480 (598)
.++|++|++++|++++ .+|..+..+++|++|++++|++++
T Consensus 365 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 365 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred HcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 6799999999999986 788889999999999999999874
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.3e-29 Score=257.30 Aligned_cols=241 Identities=22% Similarity=0.260 Sum_probs=173.1
Q ss_pred EEEEEcCCCCCCCCCCCceecCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCC
Q 040109 84 VLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRL 163 (598)
Q Consensus 84 v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 163 (598)
++.+++++ ..+. .+|..+. +++++|++++|.+++. .+..|..+++|++|++++|.+++..|..|+++++|
T Consensus 33 l~~l~~~~------~~l~-~lp~~~~--~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (330)
T 1xku_A 33 LRVVQCSD------LGLE-KVPKDLP--PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102 (330)
T ss_dssp TTEEECTT------SCCC-SCCCSCC--TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred CeEEEecC------CCcc-ccCccCC--CCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCC
Confidence 34567776 4444 4565543 6899999999999974 55689999999999999999998889999999999
Q ss_pred CEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCC--CCCChhhhccccCCc
Q 040109 164 QVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPP--ISTPSLLHLNYSKSL 241 (598)
Q Consensus 164 ~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~~~~L 241 (598)
++|++++|.+. .. +..+ .++|++|++++|.+..++ +..+..+++|++|++++|.+.. ..+..+.. . ++|
T Consensus 103 ~~L~Ls~n~l~-~l-~~~~--~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~--l-~~L 173 (330)
T 1xku_A 103 ERLYLSKNQLK-EL-PEKM--PKTLQELRVHENEITKVR--KSVFNGLNQMIVVELGTNPLKSSGIENGAFQG--M-KKL 173 (330)
T ss_dssp CEEECCSSCCS-BC-CSSC--CTTCCEEECCSSCCCBBC--HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG--C-TTC
T ss_pred CEEECCCCcCC-cc-Chhh--cccccEEECCCCcccccC--HhHhcCCccccEEECCCCcCCccCcChhhccC--C-CCc
Confidence 99999999973 22 2222 279999999999999874 3778999999999999998864 33322222 2 778
Q ss_pred cEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcc-hhhcCCCCCcEEEcc
Q 040109 242 EVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVP-KFLGNMSSLKMLVLS 320 (598)
Q Consensus 242 ~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls 320 (598)
++|++++|.++. +|..+. +. |++|++++|.+++..|..+..+++|++|++++|.+++++ ..+..+++|++|+++
T Consensus 174 ~~L~l~~n~l~~-l~~~~~--~~--L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 248 (330)
T 1xku_A 174 SYIRIADTNITT-IPQGLP--PS--LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248 (330)
T ss_dssp CEEECCSSCCCS-CCSSCC--TT--CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECC
T ss_pred CEEECCCCcccc-CCcccc--cc--CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECC
Confidence 888888887774 443332 34 777777777777666666777777777777777776633 356666666667766
Q ss_pred cCcCccchhhhhhhcCCCCCCCCCCCEEEccCcccc
Q 040109 321 YNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEIT 356 (598)
Q Consensus 321 ~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~ 356 (598)
+|++. .+|..+..++ +|++|++++|+++
T Consensus 249 ~N~l~-~lp~~l~~l~-------~L~~L~l~~N~i~ 276 (330)
T 1xku_A 249 NNKLV-KVPGGLADHK-------YIQVVYLHNNNIS 276 (330)
T ss_dssp SSCCS-SCCTTTTTCS-------SCCEEECCSSCCC
T ss_pred CCcCc-cCChhhccCC-------CcCEEECCCCcCC
Confidence 66665 3344444444 5666666666555
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.5e-33 Score=297.16 Aligned_cols=359 Identities=20% Similarity=0.157 Sum_probs=274.2
Q ss_pred CCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCC----CCccccCCCCCCCEEEccCCCCCCCCCcccccCCC
Q 040109 111 LQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAG----PIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLS 186 (598)
Q Consensus 111 l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~ 186 (598)
.++|++||+++|.++.......+..+++|++|++++|.+++ .++..+..+++|++|++++|.+...........++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 35789999999999865334447889999999999999984 35677888999999999999873222222234455
Q ss_pred ----CCCEEEcCCCcCCCCC--chhHhhcCCCCCcEEeccCcCCCCCCCChhhh--ccccCCccEEEccCCCCCCCc---
Q 040109 187 ----SLRYLDLGDCKLSKFS--NWFQVLSNLRSLTTLYLGHCDLPPISTPSLLH--LNYSKSLEVIDLSNNYLTNSI--- 255 (598)
Q Consensus 187 ----~L~~L~L~~n~l~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~--~~~~~~L~~L~Ls~n~l~~~~--- 255 (598)
+|++|++++|.++... .++..+..+++|++|++++|.++......+.. ....++|++|++++|.+++..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 7999999999988531 35688999999999999999986543322221 111257999999999998744
Q ss_pred -chhhhhcCccCccEEEccCCccccccchhhc-----CCCCccEEeeccCCCCC-----cchhhcCCCCCcEEEcccCcC
Q 040109 256 -YPWLLNVSSNLVDHIDLGSNRLHGSIPVAFG-----HMASLRYLGLLSNRLRE-----VPKFLGNMSSLKMLVLSYNEL 324 (598)
Q Consensus 256 -~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l 324 (598)
+..+..++. |++|++++|.+++..+..+. ..++|++|++++|.++. ++..+..+++|++|++++|.+
T Consensus 162 l~~~l~~~~~--L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 239 (461)
T 1z7x_W 162 LASVLRAKPD--FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239 (461)
T ss_dssp HHHHHHHCTT--CCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHhhCCC--CCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence 556667788 99999999999866555543 36799999999999987 577888899999999999998
Q ss_pred ccchhhhhh-----hcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceE
Q 040109 325 RGELSEFIQ-----NVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKII 399 (598)
Q Consensus 325 ~~~~~~~l~-----~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 399 (598)
.+.....+. ..+ +|++|++++|.++..-. ......+..+++|++|
T Consensus 240 ~~~~~~~l~~~~~~~~~-------~L~~L~L~~n~l~~~~~-----------------------~~l~~~l~~~~~L~~L 289 (461)
T 1z7x_W 240 GDVGMAELCPGLLHPSS-------RLRTLWIWECGITAKGC-----------------------GDLCRVLRAKESLKEL 289 (461)
T ss_dssp HHHHHHHHHHHHTSTTC-------CCCEEECTTSCCCHHHH-----------------------HHHHHHHHHCTTCCEE
T ss_pred ChHHHHHHHHHHhcCCC-------CceEEECcCCCCCHHHH-----------------------HHHHHHHhhCCCcceE
Confidence 875433332 244 89999999999874200 0012334557899999
Q ss_pred eccCCcCCCcCchhhhcc-----cCCcEEECcCCcCccc----CCcccCCCCCCCeeeCCCCccCCCCcccccC-----C
Q 040109 400 DLSSNKLGGEVPEEIMDL-----VGLVALNLSNNNLTGQ----ITPRIGQLKSLDFLDLSINHFFGGIPSSLSR-----L 465 (598)
Q Consensus 400 ~Ls~n~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l 465 (598)
++++|.+++..+..+... ++|++|++++|.+++. ++..+..+++|++|++++|++++..+..+.. .
T Consensus 290 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 369 (461)
T 1z7x_W 290 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPG 369 (461)
T ss_dssp ECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred ECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCC
Confidence 999999986666566543 6999999999999875 5667788899999999999998765555543 7
Q ss_pred CCCCEEeCCCCccee----cCCCC-CccCccCCCccCCCCC
Q 040109 466 RLLSVMDLSYNNFSG----KIPKG-TQLQRFGASTYAGNPE 501 (598)
Q Consensus 466 ~~L~~L~ls~N~l~~----~~p~~-~~~~~l~~~~~~gnp~ 501 (598)
++|++|++++|++++ .+|.. ...+++..+++.+|+.
T Consensus 370 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 370 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred CceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 799999999999985 55543 3467788888888854
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1e-28 Score=253.10 Aligned_cols=188 Identities=21% Similarity=0.268 Sum_probs=89.5
Q ss_pred cCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCccccc
Q 040109 104 INPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLS 183 (598)
Q Consensus 104 l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~ 183 (598)
+|..+. ++|++|++++|.+++. .+..+..+++|++|++++|.+++..|..|+++++|++|++++|.+ .......+.
T Consensus 46 iP~~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~ 121 (353)
T 2z80_A 46 IPSGLT--EAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFK 121 (353)
T ss_dssp CCTTCC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-SSCCHHHHT
T ss_pred cccccc--ccCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC-CcCCHhHhC
Confidence 444433 3566666666666642 333566666666666666666655555566666666666666554 222222244
Q ss_pred CCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCC-CCCCcchhhhhc
Q 040109 184 YLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNY-LTNSIYPWLLNV 262 (598)
Q Consensus 184 ~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~ 262 (598)
++++|++|++++|.++.++. ...+..+ ++|++|++++|. +.+..+..+..+
T Consensus 122 ~l~~L~~L~L~~n~l~~l~~-~~~~~~l---------------------------~~L~~L~l~~n~~~~~~~~~~~~~l 173 (353)
T 2z80_A 122 PLSSLTFLNLLGNPYKTLGE-TSLFSHL---------------------------TKLQILRVGNMDTFTKIQRKDFAGL 173 (353)
T ss_dssp TCTTCSEEECTTCCCSSSCS-SCSCTTC---------------------------TTCCEEEEEESSSCCEECTTTTTTC
T ss_pred CCccCCEEECCCCCCcccCc-hhhhccC---------------------------CCCcEEECCCCccccccCHHHccCC
Confidence 44444444444444443211 0012222 444444444442 222223334444
Q ss_pred CccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcchh-hcCCCCCcEEEcccCcCc
Q 040109 263 SSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKF-LGNMSSLKMLVLSYNELR 325 (598)
Q Consensus 263 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~ 325 (598)
++ |++|++++|.+++..|..+..+++|++|++++|.++.+|.. +..+++|+.|++++|.++
T Consensus 174 ~~--L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 174 TF--LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp CE--EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred CC--CCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence 44 55555555555544455555555555555555555444332 222444444444444443
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=5.9e-28 Score=255.07 Aligned_cols=251 Identities=22% Similarity=0.231 Sum_probs=188.1
Q ss_pred CCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccC
Q 040109 187 SLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNL 266 (598)
Q Consensus 187 ~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~ 266 (598)
..+.++.++..++.+|. .+ .++++.|++++|++....+..+..+ ++|++|+|++|.+++..+..+.++++
T Consensus 44 ~~~~v~c~~~~l~~iP~---~~--~~~l~~L~L~~n~i~~~~~~~~~~l---~~L~~L~Ls~n~i~~i~~~~~~~l~~-- 113 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPD---GI--STNTRLLNLHENQIQIIKVNSFKHL---RHLEILQLSRNHIRTIEIGAFNGLAN-- 113 (440)
T ss_dssp TSCEEECCSCCCSSCCS---CC--CTTCSEEECCSCCCCEECTTTTSSC---SSCCEEECCSSCCCEECGGGGTTCSS--
T ss_pred CCCEEEeCCCCcCcCCC---CC--CCCCcEEEccCCcCCeeCHHHhhCC---CCCCEEECCCCcCCccChhhccCCcc--
Confidence 45678888888877654 22 2678888888888887766444433 78888888888888766777778877
Q ss_pred ccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcch-hhcCCCCCcEEEcccC-cCccchhhhhhhcCCCCCCCCC
Q 040109 267 VDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPK-FLGNMSSLKMLVLSYN-ELRGELSEFIQNVSSGSTKNSS 344 (598)
Q Consensus 267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~g~~~~~~ 344 (598)
|++|++++|.+++..+..|..+++|++|++++|.++.+|. .+..+++|++|++++| .+....+..+..++ +
T Consensus 114 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~-------~ 186 (440)
T 3zyj_A 114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS-------N 186 (440)
T ss_dssp CCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS-------S
T ss_pred CCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc-------c
Confidence 8888888888886666678888888888888888887554 6777888888888874 44444444566666 7
Q ss_pred CCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEE
Q 040109 345 LEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALN 424 (598)
Q Consensus 345 L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 424 (598)
|+.|++++|.++ .+|.+ ..+++|+.|+|++|++++..|..|.++++|+.|+
T Consensus 187 L~~L~L~~n~l~-~~~~~----------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 237 (440)
T 3zyj_A 187 LRYLNLAMCNLR-EIPNL----------------------------TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237 (440)
T ss_dssp CCEEECTTSCCS-SCCCC----------------------------TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCeecCCCCcCc-ccccc----------------------------CCCcccCEEECCCCccCccChhhhccCccCCEEE
Confidence 888888888776 23322 3355678888888888877778888888888888
Q ss_pred CcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcceecCC
Q 040109 425 LSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIP 483 (598)
Q Consensus 425 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 483 (598)
|++|++++..+..|.++++|++|+|++|++++..+..|..+++|+.|++++|++.+.+.
T Consensus 238 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp CTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred CCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 88888887777788888888888888888887666777788888888888888876554
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=8.6e-28 Score=254.70 Aligned_cols=252 Identities=22% Similarity=0.208 Sum_probs=202.8
Q ss_pred CCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccC
Q 040109 187 SLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNL 266 (598)
Q Consensus 187 ~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~ 266 (598)
..+.++.++..++.+|. .+ .++++.|++++|.+++..+..+..+ ++|++|++++|.+++..+..+.++++
T Consensus 55 ~~~~v~c~~~~l~~iP~---~~--~~~l~~L~L~~n~i~~~~~~~~~~l---~~L~~L~Ls~n~i~~~~~~~~~~l~~-- 124 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQ---GI--PSNTRYLNLMENNIQMIQADTFRHL---HHLEVLQLGRNSIRQIEVGAFNGLAS-- 124 (452)
T ss_dssp SSCEEECCSSCCSSCCS---CC--CTTCSEEECCSSCCCEECTTTTTTC---TTCCEEECCSSCCCEECTTTTTTCTT--
T ss_pred CCcEEEECCCCcCccCC---CC--CCCccEEECcCCcCceECHHHcCCC---CCCCEEECCCCccCCcChhhccCccc--
Confidence 45678888888887654 22 2688999999999988776555443 88999999999998777788888888
Q ss_pred ccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcch-hhcCCCCCcEEEcccC-cCccchhhhhhhcCCCCCCCCC
Q 040109 267 VDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPK-FLGNMSSLKMLVLSYN-ELRGELSEFIQNVSSGSTKNSS 344 (598)
Q Consensus 267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~g~~~~~~ 344 (598)
|++|++++|.+++..+..|..+++|++|++++|+++.+|. .+.++++|+.|++++| .+....+..+..++ +
T Consensus 125 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~-------~ 197 (452)
T 3zyi_A 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF-------N 197 (452)
T ss_dssp CCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCT-------T
T ss_pred CCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCC-------C
Confidence 9999999999987777778889999999999999888654 6888899999999984 44444445666666 8
Q ss_pred CCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEE
Q 040109 345 LEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALN 424 (598)
Q Consensus 345 L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 424 (598)
|+.|++++|.+++ +|.+ ..+++|+.|+|++|.+++..|..|.++++|+.|+
T Consensus 198 L~~L~L~~n~l~~-~~~~----------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 248 (452)
T 3zyi_A 198 LKYLNLGMCNIKD-MPNL----------------------------TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248 (452)
T ss_dssp CCEEECTTSCCSS-CCCC----------------------------TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEE
T ss_pred CCEEECCCCcccc-cccc----------------------------cccccccEEECcCCcCcccCcccccCccCCCEEE
Confidence 9999999998874 2332 3456788899999999888888888999999999
Q ss_pred CcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcceecCCC
Q 040109 425 LSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPK 484 (598)
Q Consensus 425 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 484 (598)
+++|++++..|..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+.+..
T Consensus 249 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 249 VMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred eCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 999999888888888899999999999999877777788888999999999988866553
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=4e-28 Score=243.57 Aligned_cols=233 Identities=25% Similarity=0.297 Sum_probs=181.8
Q ss_pred CCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCC--cchhhhhcCccCccEEEccCCccccccchhhcCCC
Q 040109 212 RSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNS--IYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMA 289 (598)
Q Consensus 212 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~ 289 (598)
++|++|++++|.++..+...+... ++|++|++++|.++.. .+..+..+++ |++|++++|.++ .+|..+..++
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~~~~~~--L~~L~Ls~n~i~-~l~~~~~~l~ 101 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKL---TQLTKLSLSSNGLSFKGCCSQSDFGTTS--LKYLDLSFNGVI-TMSSNFLGLE 101 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTC---TTCSEEECCSSCCCEEEEEEHHHHSCSC--CCEEECCSCSEE-EEEEEEETCT
T ss_pred CCCCEEECCCCccCccCHhHhhcc---ccCCEEECCCCccCcccCcccccccccc--cCEEECCCCccc-cChhhcCCCC
Confidence 355555555555554443222222 5666666666666522 2455666666 888888888887 4666688889
Q ss_pred CccEEeeccCCCCCcc--hhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccc-cCCCCCCCC
Q 040109 290 SLRYLGLLSNRLREVP--KFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITG-TIPNLGGFP 366 (598)
Q Consensus 290 ~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~-~~p~l~~l~ 366 (598)
+|++|++++|.+++++ ..+..+++|++|++++|.+.+..+..+..++ +|++|++++|.+++ .+|
T Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-------~L~~L~l~~n~l~~~~~~------ 168 (306)
T 2z66_A 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-------SLEVLKMAGNSFQENFLP------ 168 (306)
T ss_dssp TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCT-------TCCEEECTTCEEGGGEEC------
T ss_pred CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCc-------CCCEEECCCCccccccch------
Confidence 9999999999888865 3788889999999999999888888887777 89999999998875 233
Q ss_pred cCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCe
Q 040109 367 GMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDF 446 (598)
Q Consensus 367 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 446 (598)
..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++
T Consensus 169 ---------------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 227 (306)
T 2z66_A 169 ---------------------DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227 (306)
T ss_dssp ---------------------SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCE
T ss_pred ---------------------hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCE
Confidence 23345778999999999999888889999999999999999999777778999999999
Q ss_pred eeCCCCccCCCCcccccCCC-CCCEEeCCCCcceecCCC
Q 040109 447 LDLSINHFFGGIPSSLSRLR-LLSVMDLSYNNFSGKIPK 484 (598)
Q Consensus 447 L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~~~~p~ 484 (598)
|++++|++++..|..+..++ +|++|++++|++++..+.
T Consensus 228 L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 228 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp EECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred eECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 99999999999999998885 899999999999876553
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=4.8e-28 Score=248.17 Aligned_cols=284 Identities=22% Similarity=0.215 Sum_probs=194.5
Q ss_pred cCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCC
Q 040109 109 LKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSL 188 (598)
Q Consensus 109 ~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L 188 (598)
..++.....+++++.++. +|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+ ....+..+.++++|
T Consensus 28 ~~C~~~~~c~~~~~~l~~--iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L 102 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLNS--IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSL 102 (353)
T ss_dssp CEECTTSEEECCSTTCSS--CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC-CEECTTTTTTCTTC
T ss_pred CCCCCCeEeeCCCCCccc--cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc-CccCHhhcCCCCCC
Confidence 345556678999999984 777664 5899999999999876666888999999999999887 33444557778888
Q ss_pred CEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCcc
Q 040109 189 RYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVD 268 (598)
Q Consensus 189 ~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~ 268 (598)
++|++++|.+++++. ..+..+++|++|++++|+++..+. ...+..+++ |+
T Consensus 103 ~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~l~~--------------------------~~~~~~l~~--L~ 152 (353)
T 2z80_A 103 EHLDLSYNYLSNLSS--SWFKPLSSLTFLNLLGNPYKTLGE--------------------------TSLFSHLTK--LQ 152 (353)
T ss_dssp CEEECCSSCCSSCCH--HHHTTCTTCSEEECTTCCCSSSCS--------------------------SCSCTTCTT--CC
T ss_pred CEEECCCCcCCcCCH--hHhCCCccCCEEECCCCCCcccCc--------------------------hhhhccCCC--Cc
Confidence 888888887777532 445666666666665555543211 024556677 99
Q ss_pred EEEccCC-ccccccchhhcCCCCccEEeeccCCCCC-cchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCC
Q 040109 269 HIDLGSN-RLHGSIPVAFGHMASLRYLGLLSNRLRE-VPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLE 346 (598)
Q Consensus 269 ~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~ 346 (598)
+|++++| .+++..+..+..+++|++|++++|.+++ .|..+..+++|++|++++|.+....+..+..++ +|+
T Consensus 153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-------~L~ 225 (353)
T 2z80_A 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS-------SVE 225 (353)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTT-------TEE
T ss_pred EEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcc-------ccc
Confidence 9999999 4776667889999999999999999998 578899999999999999998766655555666 889
Q ss_pred EEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECc
Q 040109 347 WLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLS 426 (598)
Q Consensus 347 ~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 426 (598)
.|++++|.+++..+.- + . .....+.++.++++
T Consensus 226 ~L~L~~n~l~~~~~~~--l----------------------~------------------------~~~~~~~l~~l~L~ 257 (353)
T 2z80_A 226 CLELRDTDLDTFHFSE--L----------------------S------------------------TGETNSLIKKFTFR 257 (353)
T ss_dssp EEEEESCBCTTCCCC------------------------------------------------------CCCCCCEEEEE
T ss_pred EEECCCCccccccccc--c----------------------c------------------------cccccchhhccccc
Confidence 9999988887533210 0 0 01112334444444
Q ss_pred CCcCcc----cCCcccCCCCCCCeeeCCCCccCCCCccc-ccCCCCCCEEeCCCCcceecCC
Q 040109 427 NNNLTG----QITPRIGQLKSLDFLDLSINHFFGGIPSS-LSRLRLLSVMDLSYNNFSGKIP 483 (598)
Q Consensus 427 ~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~~p 483 (598)
++.+++ .+|+.+..+++|++|++++|+++ .+|.. |.++++|++|++++|++.|.+|
T Consensus 258 ~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 258 NVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp SCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 444433 24555566666666666666665 34433 4666666666666666666554
No 54
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=5.6e-28 Score=243.07 Aligned_cols=226 Identities=28% Similarity=0.422 Sum_probs=205.6
Q ss_pred CCccEEEccCCCCCC--CcchhhhhcCccCccEEEccC-CccccccchhhcCCCCccEEeeccCCCCC-cchhhcCCCCC
Q 040109 239 KSLEVIDLSNNYLTN--SIYPWLLNVSSNLVDHIDLGS-NRLHGSIPVAFGHMASLRYLGLLSNRLRE-VPKFLGNMSSL 314 (598)
Q Consensus 239 ~~L~~L~Ls~n~l~~--~~~~~l~~~~~~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L 314 (598)
.+++.|++++|.+++ .+|+.+..++. |++|++++ |.+.+.+|..+.++++|++|++++|.+++ +|..+.++++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~--L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPY--LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTT--CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCC--CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 578999999999998 88999999999 99999995 99999999999999999999999999995 89999999999
Q ss_pred cEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCccccccccc
Q 040109 315 KMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILG 394 (598)
Q Consensus 315 ~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 394 (598)
++|++++|.+.+..|..+..++ +|++|++++|.+++.+|. .+..++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~-------~L~~L~L~~N~l~~~~p~---------------------------~l~~l~ 173 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLP-------NLVGITFDGNRISGAIPD---------------------------SYGSFS 173 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCT-------TCCEEECCSSCCEEECCG---------------------------GGGCCC
T ss_pred CEEeCCCCccCCcCChHHhcCC-------CCCeEECcCCcccCcCCH---------------------------HHhhhh
Confidence 9999999999999999999988 999999999999977663 233454
Q ss_pred -ccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeC
Q 040109 395 -LIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDL 473 (598)
Q Consensus 395 -~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 473 (598)
+|+.|++++|++++.+|..+..++ |++|++++|++++.+|..+..+++|++|++++|++++.+|. +..+++|++|++
T Consensus 174 ~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~L 251 (313)
T 1ogq_A 174 KLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDL 251 (313)
T ss_dssp TTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEEC
T ss_pred hcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEEC
Confidence 899999999999999999999997 99999999999999999999999999999999999977766 888999999999
Q ss_pred CCCcceecCCCC-CccCccCCCccCCCCCC
Q 040109 474 SYNNFSGKIPKG-TQLQRFGASTYAGNPEL 502 (598)
Q Consensus 474 s~N~l~~~~p~~-~~~~~l~~~~~~gnp~l 502 (598)
++|++++.+|.. ..+++++.+++++|+..
T Consensus 252 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp CSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred cCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence 999999999875 46788888999999654
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.2e-27 Score=240.19 Aligned_cols=251 Identities=19% Similarity=0.204 Sum_probs=214.8
Q ss_pred cEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccc--cchhhcCCCCcc
Q 040109 215 TTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGS--IPVAFGHMASLR 292 (598)
Q Consensus 215 ~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~--~p~~l~~l~~L~ 292 (598)
+.++.+++.++..+.. ..+++++|++++|.++...+..+..++. |++|++++|.++.. .+..+..+++|+
T Consensus 10 ~~l~c~~~~l~~ip~~------~~~~l~~L~L~~n~l~~i~~~~~~~l~~--L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 81 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTG------IPSSATRLELESNKLQSLPHGVFDKLTQ--LTKLSLSSNGLSFKGCCSQSDFGTTSLK 81 (306)
T ss_dssp TEEECCSSCCSSCCSC------CCTTCCEEECCSSCCCCCCTTTTTTCTT--CSEEECCSSCCCEEEEEEHHHHSCSCCC
T ss_pred CEEEcCCCCcccCCCC------CCCCCCEEECCCCccCccCHhHhhcccc--CCEEECCCCccCcccCcccccccccccC
Confidence 4567777777665542 1278999999999999655556788988 99999999999843 467788899999
Q ss_pred EEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchh-hhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccc
Q 040109 293 YLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELS-EFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMP 371 (598)
Q Consensus 293 ~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~ 371 (598)
+|++++|.++.+|..+..+++|++|++++|.+.+..+ ..+..++ +|++|++++|.+++..|.
T Consensus 82 ~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-------~L~~L~l~~n~l~~~~~~---------- 144 (306)
T 2z66_A 82 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR-------NLIYLDISHTHTRVAFNG---------- 144 (306)
T ss_dssp EEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCT-------TCCEEECTTSCCEECSTT----------
T ss_pred EEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhcc-------CCCEEECCCCcCCccchh----------
Confidence 9999999999999889999999999999999988765 5677776 999999999999865543
Q ss_pred cccccceEEEEcCCcccccccccccceEeccCCcCCC-cCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCC
Q 040109 372 LIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGG-EVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLS 450 (598)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 450 (598)
.+..+++|++|++++|.+++ .+|..+..+++|++|++++|++++..|..+..+++|++|+++
T Consensus 145 -----------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 207 (306)
T 2z66_A 145 -----------------IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207 (306)
T ss_dssp -----------------TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred -----------------hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC
Confidence 23457789999999999986 578899999999999999999998889999999999999999
Q ss_pred CCccCCCCcccccCCCCCCEEeCCCCcceecCCCC-Ccc-CccCCCccCCCCCCCCCCC
Q 040109 451 INHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKG-TQL-QRFGASTYAGNPELCGLPL 507 (598)
Q Consensus 451 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~-~~l~~~~~~gnp~lC~~~~ 507 (598)
+|++++..+..+..+++|++|++++|++++..|.. ..+ .++..+++.+||+.|+|+.
T Consensus 208 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp TSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred CCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 99999887778999999999999999999887765 334 4888999999999998764
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=2.8e-26 Score=249.74 Aligned_cols=262 Identities=21% Similarity=0.234 Sum_probs=160.6
Q ss_pred CCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCCEE
Q 040109 112 QHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRYL 191 (598)
Q Consensus 112 ~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L 191 (598)
.+++.|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.+.. .+. .+++|++|
T Consensus 40 ~~l~~L~ls~n~L~--~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGLT--TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS--LPV---LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCCS--CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC--CCC---CCTTCCEE
T ss_pred CCCcEEEecCCCcC--ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc--CCC---CCCCCCEE
Confidence 35899999999998 4787765 89999999999998 5665 57899999999998732 222 67889999
Q ss_pred EcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEE
Q 040109 192 DLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHID 271 (598)
Q Consensus 192 ~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~ 271 (598)
++++|.+++++. .+++|+.|++++|.++..+.. .++|++|++++|.+++ +|.. ..+ |+.|+
T Consensus 107 ~Ls~N~l~~l~~------~l~~L~~L~L~~N~l~~lp~~-------l~~L~~L~Ls~N~l~~-l~~~---~~~--L~~L~ 167 (622)
T 3g06_A 107 SIFSNPLTHLPA------LPSGLCKLWIFGNQLTSLPVL-------PPGLQELSVSDNQLAS-LPAL---PSE--LCKLW 167 (622)
T ss_dssp EECSCCCCCCCC------CCTTCCEEECCSSCCSCCCCC-------CTTCCEEECCSSCCSC-CCCC---CTT--CCEEE
T ss_pred ECcCCcCCCCCC------CCCCcCEEECCCCCCCcCCCC-------CCCCCEEECcCCcCCC-cCCc---cCC--CCEEE
Confidence 999998888643 467788888888877765431 1566677777666653 2221 122 55555
Q ss_pred ccCCccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEcc
Q 040109 272 LGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLA 351 (598)
Q Consensus 272 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls 351 (598)
+++|.+++ +| ..+++|+.|++++|.++++|.. +++|+.|++++|.++....
T Consensus 168 L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~---------------------- 218 (622)
T 3g06_A 168 AYNNQLTS-LP---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPA---------------------- 218 (622)
T ss_dssp CCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCC----------------------
T ss_pred CCCCCCCC-Cc---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCC----------------------
Confidence 55555553 33 2334555555555555554432 2344444444444442211
Q ss_pred CccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCc
Q 040109 352 SNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLT 431 (598)
Q Consensus 352 ~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 431 (598)
.+++|+.|++++|++++ +| ..+++|+.|++++|+++
T Consensus 219 ----------------------------------------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~ 254 (622)
T 3g06_A 219 ----------------------------------------LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT 254 (622)
T ss_dssp ----------------------------------------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS
T ss_pred ----------------------------------------CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC
Confidence 12345555555555553 33 23455666666666665
Q ss_pred ccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcceecCC
Q 040109 432 GQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIP 483 (598)
Q Consensus 432 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 483 (598)
.+|. .+++|+.|+|++|+++ .+|..+.++++|+.|++++|++++.+|
T Consensus 255 -~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 255 -SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp -CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred -cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence 3444 3455666666666665 455556666666666666666655444
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.2e-27 Score=235.58 Aligned_cols=249 Identities=20% Similarity=0.177 Sum_probs=186.6
Q ss_pred cEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEE
Q 040109 215 TTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYL 294 (598)
Q Consensus 215 ~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 294 (598)
+.++.+++.++..+.. ..++|++|++++|.+++..+..+..++. |++|++++|.+++..|..+..+++|++|
T Consensus 14 ~~~~c~~~~l~~ip~~------~~~~l~~L~l~~n~i~~~~~~~~~~~~~--L~~L~l~~n~l~~~~~~~~~~l~~L~~L 85 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG------IPAASQRIFLHGNRISHVPAASFRACRN--LTILWLHSNVLARIDAAAFTGLALLEQL 85 (285)
T ss_dssp CEEECCSSCCSSCCTT------CCTTCSEEECTTSCCCEECTTTTTTCTT--CCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred eEEEcCcCCcccCCcC------CCCCceEEEeeCCcCCccCHHHcccCCC--CCEEECCCCccceeCHhhcCCccCCCEE
Confidence 3455555555544321 1156777777777777655566777777 8888888888877777778888888888
Q ss_pred eeccCC-CCCc-chhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCcccc
Q 040109 295 GLLSNR-LREV-PKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPL 372 (598)
Q Consensus 295 ~Ls~n~-l~~l-p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~ 372 (598)
++++|. ++.+ |..+..+++|++|++++|.+.+..|..+..++ +|++|++++|.+++..+.
T Consensus 86 ~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-------~L~~L~l~~n~l~~~~~~----------- 147 (285)
T 1ozn_A 86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA-------ALQYLYLQDNALQALPDD----------- 147 (285)
T ss_dssp ECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-------TCCEEECCSSCCCCCCTT-----------
T ss_pred eCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc-------CCCEEECCCCcccccCHh-----------
Confidence 888886 7765 56778888888888888888887777777776 788888888887743321
Q ss_pred ccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCC
Q 040109 373 IYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSIN 452 (598)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 452 (598)
.++.+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..+++|++|++++|
T Consensus 148 ----------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 148 ----------------TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp ----------------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ----------------HhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence 2344667888999999888666667888999999999999999888889999999999999999
Q ss_pred ccCCCCcccccCCCCCCEEeCCCCcceecCCCCCccCccCCCccCCCCCCCCC
Q 040109 453 HFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGL 505 (598)
Q Consensus 453 ~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~gnp~lC~~ 505 (598)
++++..++.+..+++|++|++++|++.+..+.......+.......+...|..
T Consensus 212 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~ 264 (285)
T 1ozn_A 212 NLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSL 264 (285)
T ss_dssp CCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEE
T ss_pred cCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCC
Confidence 99887777889999999999999999877665444444444455555555543
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=3.5e-26 Score=248.99 Aligned_cols=291 Identities=24% Similarity=0.260 Sum_probs=212.0
Q ss_pred CCCCCCCCCCCCCCCCccCeee------CCCCCcEEEEEcCCCCCCCCCCCceecCccccCCCCCCEEECcCCCCCCCCc
Q 040109 56 ILSSWGREDEKRNCCKWRGVRC------SNKTGHVLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPI 129 (598)
Q Consensus 56 ~l~~W~~~~~~~~~c~w~gv~C------~~~~~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~ 129 (598)
...+|. .+.++|.|+|..| .-....++.+++++ +.++ .+|..+. ++|++|++++|.++. +
T Consensus 11 ~w~~W~---~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~------n~L~-~lp~~l~--~~L~~L~L~~N~l~~--l 76 (622)
T 3g06_A 11 VWSAWR---RAAPAEESRGRAAVVQKMRACLNNGNAVLNVGE------SGLT-TLPDCLP--AHITTLVIPDNNLTS--L 76 (622)
T ss_dssp HHHHHH---HTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCS------SCCS-CCCSCCC--TTCSEEEECSCCCSC--C
T ss_pred HHHHHH---hcCCcchhccccccCcccccccCCCCcEEEecC------CCcC-ccChhhC--CCCcEEEecCCCCCC--C
Confidence 345575 3667899976422 11123478899998 6776 7787776 899999999999984 6
Q ss_pred chhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhc
Q 040109 130 PEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLS 209 (598)
Q Consensus 130 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~ 209 (598)
|. .+++|++|+|++|.++ .+|. .+++|++|++++|.+... +. .+++|++|++++|+++.+|.
T Consensus 77 p~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l--~~---~l~~L~~L~L~~N~l~~lp~------ 138 (622)
T 3g06_A 77 PA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTHL--PA---LPSGLCKLWIFGNQLTSLPV------ 138 (622)
T ss_dssp CC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCCC--CC---CCTTCCEEECCSSCCSCCCC------
T ss_pred CC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCCC--CC---CCCCcCEEECCCCCCCcCCC------
Confidence 66 5799999999999998 5665 779999999999998332 22 67899999999999998764
Q ss_pred CCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCC
Q 040109 210 NLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMA 289 (598)
Q Consensus 210 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~ 289 (598)
.+++|++|++++|.+++.+. .+++|+.|++++|.+++ +| ..+++ |+.|++++|.+++ +|. .++
T Consensus 139 ~l~~L~~L~Ls~N~l~~l~~-------~~~~L~~L~L~~N~l~~-l~---~~~~~--L~~L~Ls~N~l~~-l~~---~~~ 201 (622)
T 3g06_A 139 LPPGLQELSVSDNQLASLPA-------LPSELCKLWAYNNQLTS-LP---MLPSG--LQELSVSDNQLAS-LPT---LPS 201 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCCSC-CC---CCCTT--CCEEECCSSCCSC-CCC---CCT
T ss_pred CCCCCCEEECcCCcCCCcCC-------ccCCCCEEECCCCCCCC-Cc---ccCCC--CcEEECCCCCCCC-CCC---ccc
Confidence 24899999999999988653 12789999999999986 45 34556 9999999999985 443 347
Q ss_pred CccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCc
Q 040109 290 SLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGML 369 (598)
Q Consensus 290 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~ 369 (598)
+|+.|++++|.++.+|.. +++|+.|++++|.+++. | ..++ +|+.|++++|.++
T Consensus 202 ~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~l-p---~~l~-------~L~~L~Ls~N~L~------------- 254 (622)
T 3g06_A 202 ELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSL-P---VLPS-------ELKELMVSGNRLT------------- 254 (622)
T ss_dssp TCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCC-C---CCCT-------TCCEEECCSSCCS-------------
T ss_pred hhhEEECcCCcccccCCC---CCCCCEEEccCCccCcC-C---CCCC-------cCcEEECCCCCCC-------------
Confidence 999999999999998853 47888888888887753 2 1112 5555555555554
Q ss_pred cccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeC
Q 040109 370 MPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDL 449 (598)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 449 (598)
.+|. .+++|+.|+|++|+++ .+|..+.++++|+.|+|
T Consensus 255 ---------------------------------------~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 255 ---------------------------------------SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp ---------------------------------------CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred ---------------------------------------cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 2332 3455666666666665 55555666666666666
Q ss_pred CCCccCCCCcccccCC
Q 040109 450 SINHFFGGIPSSLSRL 465 (598)
Q Consensus 450 s~N~l~~~~p~~l~~l 465 (598)
++|.+++..|..+..+
T Consensus 292 ~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 292 EGNPLSERTLQALREI 307 (622)
T ss_dssp CSCCCCHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHhc
Confidence 6666665555555443
No 59
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.6e-26 Score=233.78 Aligned_cols=235 Identities=17% Similarity=0.196 Sum_probs=145.1
Q ss_pred CCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCc
Q 040109 185 LSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSS 264 (598)
Q Consensus 185 l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~ 264 (598)
.+++++|++++|.++.+| ..+..+++|++|++++|.++.. +..+.. + ++|++|++++|.++ .+|..+..+++
T Consensus 80 ~~~l~~L~L~~n~l~~lp---~~l~~l~~L~~L~L~~n~l~~l-p~~~~~--l-~~L~~L~Ls~n~l~-~lp~~l~~l~~ 151 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFP---DQAFRLSHLQHMTIDAAGLMEL-PDTMQQ--F-AGLETLTLARNPLR-ALPASIASLNR 151 (328)
T ss_dssp STTCCEEEEESSCCSSCC---SCGGGGTTCSEEEEESSCCCCC-CSCGGG--G-TTCSEEEEESCCCC-CCCGGGGGCTT
T ss_pred ccceeEEEccCCCchhcC---hhhhhCCCCCEEECCCCCccch-hHHHhc--c-CCCCEEECCCCccc-cCcHHHhcCcC
Confidence 456777777777777543 3455566666666666666632 221222 1 56666666666665 45555555555
Q ss_pred cCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCC
Q 040109 265 NLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSS 344 (598)
Q Consensus 265 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~ 344 (598)
|++|++++|.+.+.+|..+... .++..+.++++|++|++++|.++ .+|..+..++ +
T Consensus 152 --L~~L~L~~n~~~~~~p~~~~~~--------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~-------~ 207 (328)
T 4fcg_A 152 --LRELSIRACPELTELPEPLAST--------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ-------N 207 (328)
T ss_dssp --CCEEEEEEETTCCCCCSCSEEE--------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCT-------T
T ss_pred --CCEEECCCCCCccccChhHhhc--------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCC-------C
Confidence 6666666655555555444320 00011223555555555555554 3344444444 5
Q ss_pred CCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEE
Q 040109 345 LEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALN 424 (598)
Q Consensus 345 L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 424 (598)
|++|++++|.+++..+ .+..+++|++|++++|++.+.+|..+..+++|++|+
T Consensus 208 L~~L~L~~N~l~~l~~----------------------------~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 208 LKSLKIRNSPLSALGP----------------------------AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp CCEEEEESSCCCCCCG----------------------------GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred CCEEEccCCCCCcCch----------------------------hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 5555555555543111 123355667777777777777777788888888888
Q ss_pred CcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcce
Q 040109 425 LSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFS 479 (598)
Q Consensus 425 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 479 (598)
|++|++.+.+|..+..+++|++|+|++|++.+.+|+.+.++++|+.+++..|.+.
T Consensus 260 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 8888888888888888888888888888888888888888888888888876554
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2.3e-26 Score=243.72 Aligned_cols=227 Identities=23% Similarity=0.254 Sum_probs=136.2
Q ss_pred CCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCcc
Q 040109 186 SSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSN 265 (598)
Q Consensus 186 ~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~ 265 (598)
+++++|+|++|.++.++ +..|.++++|++|++++|.+++..+..+..+ ++|++|+|++|.+++..+..+..+++
T Consensus 75 ~~l~~L~L~~n~i~~~~--~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~- 148 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQ--ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGL---ASLNTLELFDNWLTVIPSGAFEYLSK- 148 (452)
T ss_dssp TTCSEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCCEECTTTTTTC---TTCCEEECCSSCCSBCCTTTSSSCTT-
T ss_pred CCccEEECcCCcCceEC--HHHcCCCCCCCEEECCCCccCCcChhhccCc---ccCCEEECCCCcCCccChhhhcccCC-
Confidence 46666666666666542 2556666666666666666666554333332 66666666666666554555666666
Q ss_pred CccEEEccCCccccccchhhcCCCCccEEeecc-CCCCCcch-hhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCC
Q 040109 266 LVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLS-NRLREVPK-FLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNS 343 (598)
Q Consensus 266 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~ 343 (598)
|++|++++|.+++..+..|..+++|++|++++ |.+..++. .+.++++|++|++++|.+++. | .+..++
T Consensus 149 -L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~------- 218 (452)
T 3zyi_A 149 -LRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLV------- 218 (452)
T ss_dssp -CCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCT-------
T ss_pred -CCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccc-------
Confidence 66666666666655555666666666666666 33333443 456666666666666666543 2 233333
Q ss_pred CCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEE
Q 040109 344 SLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVAL 423 (598)
Q Consensus 344 ~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 423 (598)
+|+.|++++|.+++..| ..+..+++|+.|+|++|++++..+..|..+++|+.|
T Consensus 219 ~L~~L~Ls~N~l~~~~~---------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 271 (452)
T 3zyi_A 219 GLEELEMSGNHFPEIRP---------------------------GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271 (452)
T ss_dssp TCCEEECTTSCCSEECG---------------------------GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cccEEECcCCcCcccCc---------------------------ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEE
Confidence 66666666666654332 223345566666666666666666666666666666
Q ss_pred ECcCCcCcccCCcccCCCCCCCeeeCCCCccC
Q 040109 424 NLSNNNLTGQITPRIGQLKSLDFLDLSINHFF 455 (598)
Q Consensus 424 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 455 (598)
+|++|++++..+..+..+++|+.|+|++|.+.
T Consensus 272 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 272 NLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 66666666555555666666666666666654
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.9e-26 Score=242.05 Aligned_cols=251 Identities=21% Similarity=0.220 Sum_probs=172.8
Q ss_pred CcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccE
Q 040109 214 LTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRY 293 (598)
Q Consensus 214 L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 293 (598)
.+.++.++..++.++... .++++.|+|++|.+++..+..+..+++ |++|++++|.+++..+..|.++++|++
T Consensus 45 ~~~v~c~~~~l~~iP~~~------~~~l~~L~L~~n~i~~~~~~~~~~l~~--L~~L~Ls~n~i~~i~~~~~~~l~~L~~ 116 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI------STNTRLLNLHENQIQIIKVNSFKHLRH--LEILQLSRNHIRTIEIGAFNGLANLNT 116 (440)
T ss_dssp SCEEECCSCCCSSCCSCC------CTTCSEEECCSCCCCEECTTTTSSCSS--CCEEECCSSCCCEECGGGGTTCSSCCE
T ss_pred CCEEEeCCCCcCcCCCCC------CCCCcEEEccCCcCCeeCHHHhhCCCC--CCEEECCCCcCCccChhhccCCccCCE
Confidence 456666666666554421 156777777777777666667777777 777777777777666677777777777
Q ss_pred EeeccCCCCCcch-hhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCcccc
Q 040109 294 LGLLSNRLREVPK-FLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPL 372 (598)
Q Consensus 294 L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~ 372 (598)
|++++|+++.+|. .+..+++|++|++++|.+.+..+..+..++ +|+.|++++|...+.++.
T Consensus 117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-------~L~~L~l~~~~~l~~i~~----------- 178 (440)
T 3zyj_A 117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP-------SLRRLDLGELKRLSYISE----------- 178 (440)
T ss_dssp EECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCT-------TCCEEECCCCTTCCEECT-----------
T ss_pred EECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCc-------ccCEeCCCCCCCcceeCc-----------
Confidence 7777777777554 577777777777777777776666666666 777777777544333321
Q ss_pred ccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCC
Q 040109 373 IYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSIN 452 (598)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 452 (598)
..+..+++|++|+|++|+++ .+| .+..+++|++|+|++|++++..|..|.++++|+.|+|++|
T Consensus 179 ---------------~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 179 ---------------GAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp ---------------TTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC
T ss_pred ---------------chhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC
Confidence 12344666777777777777 444 4667777777777777777766777777777777777777
Q ss_pred ccCCCCcccccCCCCCCEEeCCCCcceecCCCC-CccCccCCCccCCCCCCCCCCC
Q 040109 453 HFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKG-TQLQRFGASTYAGNPELCGLPL 507 (598)
Q Consensus 453 ~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~gnp~lC~~~~ 507 (598)
++++..+..|.++++|++|+|++|++++..+.. ..+++++.+++.+||+.|+|.+
T Consensus 242 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred ceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 777777777777777777777777777433332 3456677777777777777753
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=4.4e-26 Score=226.24 Aligned_cols=231 Identities=23% Similarity=0.242 Sum_probs=143.2
Q ss_pred eeCCCCCcEEEEEcCCCCCCCCCCCceecCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCcc
Q 040109 76 RCSNKTGHVLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPH 155 (598)
Q Consensus 76 ~C~~~~~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 155 (598)
.|..... +.++.++ ..++ .+|..+ .++|++|++++|.++.. .+..|..+++|++|++++|.+++..|.
T Consensus 7 ~C~~~~~--~~~~c~~------~~l~-~ip~~~--~~~l~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~ 74 (285)
T 1ozn_A 7 VCYNEPK--VTTSCPQ------QGLQ-AVPVGI--PAASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAA 74 (285)
T ss_dssp EEECSSS--CEEECCS------SCCS-SCCTTC--CTTCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred eECCCCC--eEEEcCc------CCcc-cCCcCC--CCCceEEEeeCCcCCcc-CHHHcccCCCCCEEECCCCccceeCHh
Confidence 5643332 4456655 3444 345433 46889999999988864 556788889999999999988877788
Q ss_pred ccCCCCCCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhc
Q 040109 156 QLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHL 235 (598)
Q Consensus 156 ~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 235 (598)
.|.++++|++|++++|.......+..+..+++|++|++++|.+++++ +..+..+++|++|++++|.+++.++..+...
T Consensus 75 ~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 152 (285)
T 1ozn_A 75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG--PGLFRGLAALQYLYLQDNALQALPDDTFRDL 152 (285)
T ss_dssp TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEEC--HhHhhCCcCCCEEECCCCcccccCHhHhccC
Confidence 88888889999998887224444566777888888888888877753 2556666777777777766665544322222
Q ss_pred cccCCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCC-cchhhcCCCCC
Q 040109 236 NYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLRE-VPKFLGNMSSL 314 (598)
Q Consensus 236 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L 314 (598)
++|++|++++|.++ +..+..+..+++|++|++++|.+++ .|..+..+++|
T Consensus 153 ---~~L~~L~l~~n~l~--------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 203 (285)
T 1ozn_A 153 ---GNLTHLFLHGNRIS--------------------------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203 (285)
T ss_dssp ---TTCCEEECCSSCCC--------------------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred ---CCccEEECCCCccc--------------------------ccCHHHhcCccccCEEECCCCcccccCHhHccCcccc
Confidence 45555555555544 3333344445555555555555554 24445555555
Q ss_pred cEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCcccc
Q 040109 315 KMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEIT 356 (598)
Q Consensus 315 ~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~ 356 (598)
+.|++++|.+++..+..+..++ +|+.|++++|++.
T Consensus 204 ~~L~l~~n~l~~~~~~~~~~l~-------~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 204 MTLYLFANNLSALPTEALAPLR-------ALQYLRLNDNPWV 238 (285)
T ss_dssp CEEECCSSCCSCCCHHHHTTCT-------TCCEEECCSSCEE
T ss_pred cEeeCCCCcCCcCCHHHcccCc-------ccCEEeccCCCcc
Confidence 5555555555555444454444 5555555555554
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=3.9e-28 Score=244.83 Aligned_cols=265 Identities=24% Similarity=0.297 Sum_probs=144.9
Q ss_pred CEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCCEEEcC
Q 040109 115 TYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLG 194 (598)
Q Consensus 115 ~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~ 194 (598)
+..+++.+.+... .+..+..+++|++|+|++|.+++..|..|..+++|++|++++|.+.. .. .+..+++|++|+++
T Consensus 13 ~i~~ls~~~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~-~~~~l~~L~~L~Ls 88 (317)
T 3o53_A 13 KIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TL-DLESLSTLRTLDLN 88 (317)
T ss_dssp EEESCCTTTHHHH-HHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE--EE-EETTCTTCCEEECC
T ss_pred eEeeccccchhhh-HHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc--ch-hhhhcCCCCEEECc
Confidence 3344444444321 22334444556666666666655555555566666666666655411 11 15555556666665
Q ss_pred CCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEEccC
Q 040109 195 DCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGS 274 (598)
Q Consensus 195 ~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~ 274 (598)
+|.+++++ ..++|++|++++|.+++..+. .+ ++|++|++++|
T Consensus 89 ~n~l~~l~-------~~~~L~~L~l~~n~l~~~~~~-----~~-~~L~~L~l~~N------------------------- 130 (317)
T 3o53_A 89 NNYVQELL-------VGPSIETLHAANNNISRVSCS-----RG-QGKKNIYLANN------------------------- 130 (317)
T ss_dssp SSEEEEEE-------ECTTCCEEECCSSCCSEEEEC-----CC-SSCEEEECCSS-------------------------
T ss_pred CCcccccc-------CCCCcCEEECCCCccCCcCcc-----cc-CCCCEEECCCC-------------------------
Confidence 55554432 124555555555555443221 01 34444444444
Q ss_pred CccccccchhhcCCCCccEEeeccCCCCCc-chhh-cCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccC
Q 040109 275 NRLHGSIPVAFGHMASLRYLGLLSNRLREV-PKFL-GNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLAS 352 (598)
Q Consensus 275 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~l-p~~l-~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~ 352 (598)
.+++..+..+..+++|++|++++|.++++ +..+ ..+++|++|++++|.+++..+.. .++ +
T Consensus 131 -~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~l~-------~-------- 192 (317)
T 3o53_A 131 -KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV--VFA-------K-------- 192 (317)
T ss_dssp -CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC--CCT-------T--------
T ss_pred -CCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccccc--ccc-------c--------
Confidence 44444444455555566666666666552 2333 35666666777666665431110 111 3
Q ss_pred ccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcc
Q 040109 353 NEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTG 432 (598)
Q Consensus 353 N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 432 (598)
|++|++++|+++ .+|..+..+++|++|++++|+++
T Consensus 193 -------------------------------------------L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~- 227 (317)
T 3o53_A 193 -------------------------------------------LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227 (317)
T ss_dssp -------------------------------------------CCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-
T ss_pred -------------------------------------------CCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-
Confidence 444444444444 23344667777888888888777
Q ss_pred cCCcccCCCCCCCeeeCCCCccC-CCCcccccCCCCCCEEeCCC-CcceecCCC
Q 040109 433 QITPRIGQLKSLDFLDLSINHFF-GGIPSSLSRLRLLSVMDLSY-NNFSGKIPK 484 (598)
Q Consensus 433 ~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls~-N~l~~~~p~ 484 (598)
.+|..+..+++|+.|++++|.++ +.+|..+..+++|+.+++++ +.+.|..|.
T Consensus 228 ~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 56777777788888888888877 66677777788888888773 455555444
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1e-27 Score=241.81 Aligned_cols=257 Identities=21% Similarity=0.211 Sum_probs=173.4
Q ss_pred CCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEe
Q 040109 139 LSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLY 218 (598)
Q Consensus 139 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ 218 (598)
++..+++.+.+...+...+..+++|++|++++|.+ ....+..+.++++|++|++++|.+++.+. +..+++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~----- 81 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL-SQISAADLAPFTKLELLNLSSNVLYETLD----LESLST----- 81 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCC-CCCCHHHHTTCTTCCEEECTTSCCEEEEE----ETTCTT-----
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCcc-CcCCHHHhhCCCcCCEEECCCCcCCcchh----hhhcCC-----
Confidence 34445555555433334444555666666666665 22333445555566666666555554311 444444
Q ss_pred ccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeecc
Q 040109 219 LGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLS 298 (598)
Q Consensus 219 l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 298 (598)
|++|++++|.+++.. ..+. |++|++++|.+++..+. .+++|++|++++
T Consensus 82 ----------------------L~~L~Ls~n~l~~l~-----~~~~--L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~ 129 (317)
T 3o53_A 82 ----------------------LRTLDLNNNYVQELL-----VGPS--IETLHAANNNISRVSCS---RGQGKKNIYLAN 129 (317)
T ss_dssp ----------------------CCEEECCSSEEEEEE-----ECTT--CCEEECCSSCCSEEEEC---CCSSCEEEECCS
T ss_pred ----------------------CCEEECcCCcccccc-----CCCC--cCEEECCCCccCCcCcc---ccCCCCEEECCC
Confidence 555555555444211 1134 77777777777765443 357899999999
Q ss_pred CCCCCc-chhhcCCCCCcEEEcccCcCccchhhhhh-hcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCcccccccc
Q 040109 299 NRLREV-PKFLGNMSSLKMLVLSYNELRGELSEFIQ-NVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFD 376 (598)
Q Consensus 299 n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~ 376 (598)
|+++++ +..+..+++|++|++++|.+.+..+..+. .++ +|++|++++|.+++
T Consensus 130 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~-------~L~~L~L~~N~l~~------------------- 183 (317)
T 3o53_A 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD-------TLEHLNLQYNFIYD------------------- 183 (317)
T ss_dssp SCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTT-------TCCEEECTTSCCCE-------------------
T ss_pred CCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccC-------cCCEEECCCCcCcc-------------------
Confidence 999995 45788899999999999999988777664 455 67777777776652
Q ss_pred ceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCC
Q 040109 377 KITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFG 456 (598)
Q Consensus 377 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 456 (598)
. + ....+++|++|++++|++++ +|..+..+++|++|++++|+++
T Consensus 184 --------------------------------~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~- 227 (317)
T 3o53_A 184 --------------------------------V-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV- 227 (317)
T ss_dssp --------------------------------E-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-
T ss_pred --------------------------------c-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-
Confidence 1 1 12247899999999999995 5566999999999999999998
Q ss_pred CCcccccCCCCCCEEeCCCCcce-ecCCCC-CccCccCCCccCCC
Q 040109 457 GIPSSLSRLRLLSVMDLSYNNFS-GKIPKG-TQLQRFGASTYAGN 499 (598)
Q Consensus 457 ~~p~~l~~l~~L~~L~ls~N~l~-~~~p~~-~~~~~l~~~~~~gn 499 (598)
.+|..+..+++|+.|++++|++. +.+|.. ..++.+..+.+.++
T Consensus 228 ~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 57888999999999999999998 444432 23445555555543
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=4e-27 Score=236.82 Aligned_cols=259 Identities=19% Similarity=0.173 Sum_probs=138.9
Q ss_pred hcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCC
Q 040109 132 FIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNL 211 (598)
Q Consensus 132 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l 211 (598)
.++..++|++|++++|.+ .+|..+... |++|++++|.+.....+..+. .....+..+
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~-------------------~~~~~~~~l 94 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRIL-------------------FGALRVLGI 94 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHH-------------------HHHHHHHTT
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHH-------------------HHHHHhcCc
Confidence 344556677777777776 455544432 555566655541111111111 000011145
Q ss_pred CCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhc-----CccCccEEEccCCccccccchhhc
Q 040109 212 RSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNV-----SSNLVDHIDLGSNRLHGSIPVAFG 286 (598)
Q Consensus 212 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-----~~~~L~~L~L~~n~l~~~~p~~l~ 286 (598)
++|++|++++|++++..+..+..... ++|++|++++|.+++. |..+..+ ++ |++|++++|.+++..|..++
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~--L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATG-PDLNILNLRNVSWATR-DAWLAELQQWLKPG--LKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCS-CCCSEEEEESCBCSSS-SSHHHHHHTTCCTT--CCEEEEESCSCCCCCTTTCC
T ss_pred CCccEEEccCCcccchhHHHHHHhcC-CCccEEEccCCCCcch-hHHHHHHHHhhcCC--CcEEEeeCCCCccchHHHhc
Confidence 55666666666655444322211122 5666666666666655 5555554 45 66667766666666666666
Q ss_pred CCCCccEEeeccCCCCC---cchhh--cCCCCCcEEEcccCcCccc---hhhhhhhcCCCCCCCCCCCEEEccCcccccc
Q 040109 287 HMASLRYLGLLSNRLRE---VPKFL--GNMSSLKMLVLSYNELRGE---LSEFIQNVSSGSTKNSSLEWLYLASNEITGT 358 (598)
Q Consensus 287 ~l~~L~~L~Ls~n~l~~---lp~~l--~~l~~L~~L~Ls~n~l~~~---~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~ 358 (598)
.+++|++|++++|++.+ +|..+ ..+++|++|++++|++++. ....+..++ +|+.|++++|.++
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~-------~L~~L~Ls~N~l~-- 241 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV-------QLQGLDLSHNSLR-- 241 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC-------CCSEEECTTSCCC--
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC-------CCCEEECCCCcCC--
Confidence 66667777777666554 23333 5666666666666666531 112223333 4555555555544
Q ss_pred CCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCc-hhhhcccCCcEEECcCCcCcccCCcc
Q 040109 359 IPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVP-EEIMDLVGLVALNLSNNNLTGQITPR 437 (598)
Q Consensus 359 ~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~ 437 (598)
+.+| ..+..+++|++|++++|+++ .+|..
T Consensus 242 -------------------------------------------------~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~ 271 (312)
T 1wwl_A 242 -------------------------------------------------DAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG 271 (312)
T ss_dssp -------------------------------------------------SSCCCSCCCCCTTCCEEECTTSCCS-SCCSS
T ss_pred -------------------------------------------------cccchhhhhhcCCCCEEECCCCccC-hhhhh
Confidence 3332 23334556666666666666 55555
Q ss_pred cCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCccee
Q 040109 438 IGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFSG 480 (598)
Q Consensus 438 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 480 (598)
+. ++|++||+++|++++. |. +..+++|++|++++|++++
T Consensus 272 ~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 272 LP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred cc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 54 5666666666666644 44 6666666666666666653
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=3.8e-28 Score=244.29 Aligned_cols=270 Identities=23% Similarity=0.283 Sum_probs=207.6
Q ss_pred CCCCCCCCCCCCCCCccCeeeCCCCCcEEEEEcCCCCCCCCCCCceecCccccCCCCCCEEECcCCCCCCCCcchhcC--
Q 040109 57 LSSWGREDEKRNCCKWRGVRCSNKTGHVLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIG-- 134 (598)
Q Consensus 57 l~~W~~~~~~~~~c~w~gv~C~~~~~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~-- 134 (598)
..+|. ....|+.+..+........++.+++++ +.+ .+|..+... |++|+|++|.++...+|..+.
T Consensus 21 ~~~~~---~~~~c~~~~~~~~~~~~~~L~~l~l~~------n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~ 87 (312)
T 1wwl_A 21 KPDWS---SAFNCLGAADVELYGGGRSLEYLLKRV------DTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFG 87 (312)
T ss_dssp SCCGG---GGGGSSSCSEEEEEEEEEECTTHHHHC------CTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHH
T ss_pred ccchH---HHhhhhccccEEEEccCCCceeEeecc------ccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHH
Confidence 45675 234555555543322223445555655 556 677766554 889999999985445777766
Q ss_pred -----CCCCCCEEECCCCCCCCCCcccc--CCCCCCCEEEccCCCCCCCCCcccccCC-----CCCCEEEcCCCcCCCCC
Q 040109 135 -----SLSKLSELALSSAQLAGPIPHQL--GNLSRLQVLDLRFNNLFSSGNLDWLSYL-----SSLRYLDLGDCKLSKFS 202 (598)
Q Consensus 135 -----~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~ 202 (598)
.+++|++|++++|.+++.+|..+ +.+++|++|++++|.+... +..+..+ ++|++|++++|++.+++
T Consensus 88 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~~~~~~L~~L~L~~N~l~~~~ 165 (312)
T 1wwl_A 88 ALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR--DAWLAELQQWLKPGLKVLSIAQAHSLNFS 165 (312)
T ss_dssp HHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS--SSHHHHHHTTCCTTCCEEEEESCSCCCCC
T ss_pred HHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch--hHHHHHHHHhhcCCCcEEEeeCCCCccch
Confidence 79999999999999999899886 8999999999999998433 4556665 89999999999999874
Q ss_pred chhHhhcCCCCCcEEeccCcCCCCCCCC--hhhhccccCCccEEEccCCCCCC--Ccc-hhhhhcCccCccEEEccCCcc
Q 040109 203 NWFQVLSNLRSLTTLYLGHCDLPPISTP--SLLHLNYSKSLEVIDLSNNYLTN--SIY-PWLLNVSSNLVDHIDLGSNRL 277 (598)
Q Consensus 203 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~--~~~~~~~~~~L~~L~Ls~n~l~~--~~~-~~l~~~~~~~L~~L~L~~n~l 277 (598)
+..+..+++|++|++++|++.+..+. .+..... ++|++|++++|.+++ .++ ..+..+++ |++|++++|.+
T Consensus 166 --~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~l~~--L~~L~Ls~N~l 240 (312)
T 1wwl_A 166 --CEQVRVFPALSTLDLSDNPELGERGLISALCPLKF-PTLQVLALRNAGMETPSGVCSALAAARVQ--LQGLDLSHNSL 240 (312)
T ss_dssp --TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC-TTCCEEECTTSCCCCHHHHHHHHHHTTCC--CSEEECTTSCC
T ss_pred --HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC-CCCCEEECCCCcCcchHHHHHHHHhcCCC--CCEEECCCCcC
Confidence 37889999999999999997653211 1111233 899999999999984 222 23346677 99999999999
Q ss_pred ccccc-hhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCcccc
Q 040109 278 HGSIP-VAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEIT 356 (598)
Q Consensus 278 ~~~~p-~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~ 356 (598)
++..| ..+..+++|++|++++|+++.+|..+. ++|++|++++|++++. |. +..++ +|++|++++|+++
T Consensus 241 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~-------~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 241 RDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELP-------QVGNLSLKGNPFL 309 (312)
T ss_dssp CSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSC-------EEEEEECTTCTTT
T ss_pred CcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCC-hh-HhhCC-------CCCEEeccCCCCC
Confidence 98775 456678999999999999999998776 8999999999999987 54 77777 8999999999987
Q ss_pred c
Q 040109 357 G 357 (598)
Q Consensus 357 ~ 357 (598)
+
T Consensus 310 ~ 310 (312)
T 1wwl_A 310 D 310 (312)
T ss_dssp C
T ss_pred C
Confidence 5
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=5.2e-26 Score=242.56 Aligned_cols=146 Identities=23% Similarity=0.212 Sum_probs=67.7
Q ss_pred CCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccC
Q 040109 187 SLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNL 266 (598)
Q Consensus 187 ~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~ 266 (598)
+|++|+|++|.+++++ +..+..+++|++|++++|.+++..+ +.. +++|++|++++|.+++..+ .+.
T Consensus 35 ~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~---l~~L~~L~Ls~N~l~~l~~-----~~~-- 100 (487)
T 3oja_A 35 NVKELDLSGNPLSQIS--AADLAPFTKLELLNLSSNVLYETLD--LES---LSTLRTLDLNNNYVQELLV-----GPS-- 100 (487)
T ss_dssp GCCEEECCSSCCCCCC--GGGGTTCTTCCEEECTTSCCEEEEE--CTT---CTTCCEEECCSSEEEEEEE-----CTT--
T ss_pred CccEEEeeCCcCCCCC--HHHHhCCCCCCEEEeeCCCCCCCcc--ccc---CCCCCEEEecCCcCCCCCC-----CCC--
Confidence 5555555555555542 2445555555555555555544332 111 1455555555555442211 123
Q ss_pred ccEEEccCCccccccchhhcCCCCccEEeeccCCCCC-cchhhcCCCCCcEEEcccCcCccchhhhhh-hcCCCCCCCCC
Q 040109 267 VDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLRE-VPKFLGNMSSLKMLVLSYNELRGELSEFIQ-NVSSGSTKNSS 344 (598)
Q Consensus 267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~g~~~~~~ 344 (598)
|+.|++++|.+++..+. .+++|++|++++|.+++ .|..+..+++|+.|++++|.+++..|..+. .++ +
T Consensus 101 L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~-------~ 170 (487)
T 3oja_A 101 IETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD-------T 170 (487)
T ss_dssp CCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTT-------T
T ss_pred cCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCC-------c
Confidence 55555555555443332 23445555555555544 233444445555555555555544444433 333 4
Q ss_pred CCEEEccCcccc
Q 040109 345 LEWLYLASNEIT 356 (598)
Q Consensus 345 L~~L~Ls~N~l~ 356 (598)
|+.|+|++|.++
T Consensus 171 L~~L~Ls~N~l~ 182 (487)
T 3oja_A 171 LEHLNLQYNFIY 182 (487)
T ss_dssp CCEEECTTSCCC
T ss_pred ccEEecCCCccc
Confidence 444555444444
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=6.1e-26 Score=242.05 Aligned_cols=233 Identities=27% Similarity=0.315 Sum_probs=127.6
Q ss_pred CCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEE
Q 040109 138 KLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTL 217 (598)
Q Consensus 138 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L 217 (598)
+|++|+|++|.+++..|..|+.+++|++|+|++|.+.. .+ .+..+++|++|++++|.+++++. .++|++|
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~-~l~~l~~L~~L~Ls~N~l~~l~~-------~~~L~~L 104 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TL-DLESLSTLRTLDLNNNYVQELLV-------GPSIETL 104 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE--EE-ECTTCTTCCEEECCSSEEEEEEE-------CTTCCEE
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC--Cc-ccccCCCCCEEEecCCcCCCCCC-------CCCcCEE
Confidence 56666666666666556666666666666666666521 11 15566666666666665554321 2555555
Q ss_pred eccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeec
Q 040109 218 YLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLL 297 (598)
Q Consensus 218 ~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 297 (598)
++++|.+++.++. .+ ++|+.|++++|.++ +..|..++.+++|++|+++
T Consensus 105 ~L~~N~l~~~~~~-----~l-~~L~~L~L~~N~l~--------------------------~~~~~~~~~l~~L~~L~Ls 152 (487)
T 3oja_A 105 HAANNNISRVSCS-----RG-QGKKNIYLANNKIT--------------------------MLRDLDEGCRSRVQYLDLK 152 (487)
T ss_dssp ECCSSCCCCEEEC-----CC-SSCEEEECCSSCCC--------------------------SGGGBCGGGGSSEEEEECT
T ss_pred ECcCCcCCCCCcc-----cc-CCCCEEECCCCCCC--------------------------CCCchhhcCCCCCCEEECC
Confidence 5555555543321 01 44444444444444 4444444455555555555
Q ss_pred cCCCCC-cchhhc-CCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccccccc
Q 040109 298 SNRLRE-VPKFLG-NMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYF 375 (598)
Q Consensus 298 ~n~l~~-lp~~l~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~ 375 (598)
+|.+++ .|..+. .+++|+.|++++|.+++..+.. .++ +|
T Consensus 153 ~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~--~l~-------~L------------------------------ 193 (487)
T 3oja_A 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV--VFA-------KL------------------------------ 193 (487)
T ss_dssp TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC--CCT-------TC------------------------------
T ss_pred CCCCCCcChHHHhhhCCcccEEecCCCccccccccc--cCC-------CC------------------------------
Confidence 555555 333333 4566666666666655442110 111 33
Q ss_pred cceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccC
Q 040109 376 DKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFF 455 (598)
Q Consensus 376 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 455 (598)
+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.+.
T Consensus 194 ---------------------~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 194 ---------------------KTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp ---------------------CEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred ---------------------CEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence 334444444442 2334566666777777777766 35666666677777777777766
Q ss_pred -CCCcccccCCCCCCEEeCC
Q 040109 456 -GGIPSSLSRLRLLSVMDLS 474 (598)
Q Consensus 456 -~~~p~~l~~l~~L~~L~ls 474 (598)
+.+|..+..++.|+.++++
T Consensus 251 c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 251 CGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred CcchHHHHHhCCCCcEEecc
Confidence 4556666666666666664
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=3.3e-24 Score=210.88 Aligned_cols=218 Identities=26% Similarity=0.303 Sum_probs=142.5
Q ss_pred CCCCCccCeeeCCCCCcEEEEEcCCCCCCCCCCCceecCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCC
Q 040109 67 RNCCKWRGVRCSNKTGHVLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSS 146 (598)
Q Consensus 67 ~~~c~w~gv~C~~~~~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~ 146 (598)
.++|.|.|+.|.- .+.++.+++++ +.++ .+|..+. +++++|++++|.++.. .+..|..+++|++|++++
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~------~~l~-~ip~~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~ 70 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSS------KKLT-AIPSNIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLND 70 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTT------SCCS-SCCSCCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCS
T ss_pred CccCCCCCCCCEe-CCCCCEEEccC------CCCC-ccCCCCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCC
Confidence 3689999999852 23445677776 5555 3555443 5678888888887764 445677788888888888
Q ss_pred CCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCC
Q 040109 147 AQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPP 226 (598)
Q Consensus 147 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 226 (598)
|.++...+..|.++++|++|++++|.+ .......+.++++|++|++++|.++.++. ..+..+++|++|++++|.+++
T Consensus 71 n~l~~i~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~ 147 (270)
T 2o6q_A 71 NKLQTLPAGIFKELKNLETLWVTDNKL-QALPIGVFDQLVNLAELRLDRNQLKSLPP--RVFDSLTKLTYLSLGYNELQS 147 (270)
T ss_dssp SCCSCCCTTTTSSCTTCCEEECCSSCC-CCCCTTTTTTCSSCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCC
T ss_pred CccCeeChhhhcCCCCCCEEECCCCcC-CcCCHhHcccccCCCEEECCCCccCeeCH--HHhCcCcCCCEEECCCCcCCc
Confidence 877755555567777777777777776 33333445666667777776666666532 344555555555555555544
Q ss_pred CCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcch
Q 040109 227 ISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPK 306 (598)
Q Consensus 227 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~ 306 (598)
.+ +..+..+++ |++|++++|.+++..+..|..+++|++|++++|+++++|.
T Consensus 148 ~~---------------------------~~~~~~l~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (270)
T 2o6q_A 148 LP---------------------------KGVFDKLTS--LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE 198 (270)
T ss_dssp CC---------------------------TTTTTTCTT--CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cC---------------------------HhHccCCcc--cceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH
Confidence 33 333444555 6666666666665555567777777788888777777554
Q ss_pred -hhcCCCCCcEEEcccCcCccc
Q 040109 307 -FLGNMSSLKMLVLSYNELRGE 327 (598)
Q Consensus 307 -~l~~l~~L~~L~Ls~n~l~~~ 327 (598)
.+..+++|+.|++++|++...
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 199 GAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTTTTCTTCCEEECCSSCBCCS
T ss_pred HHhccccCCCEEEecCCCeeCC
Confidence 467778888888888877543
No 70
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.92 E-value=1.8e-27 Score=261.29 Aligned_cols=332 Identities=13% Similarity=0.071 Sum_probs=165.0
Q ss_pred CCCCCCEEECCCCCCCCC----CccccCCCCCCCEEEccCCCCCCCC---CcccccCCCCCCEEEcCCCcCCCCCchhHh
Q 040109 135 SLSKLSELALSSAQLAGP----IPHQLGNLSRLQVLDLRFNNLFSSG---NLDWLSYLSSLRYLDLGDCKLSKFSNWFQV 207 (598)
Q Consensus 135 ~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~---~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 207 (598)
.+++|++|+|++|.+++. ++..+..+++|++|++++|.+.... ....+.++++|++|++++|.+.+ ++..
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~---l~~~ 238 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE---LVGF 238 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG---GHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH---HHHH
Confidence 455555555555554433 2223344555555555555541000 01123445555555555555544 2344
Q ss_pred hcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccc-hhhc
Q 040109 208 LSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIP-VAFG 286 (598)
Q Consensus 208 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p-~~l~ 286 (598)
+..+++|++|+++...........+.....+++|+.|+++++. ...+|..+..+++ |++|++++|.+++... ..+.
T Consensus 239 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~--L~~L~Ls~~~l~~~~~~~~~~ 315 (592)
T 3ogk_B 239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQ--IRKLDLLYALLETEDHCTLIQ 315 (592)
T ss_dssp HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGG--CCEEEETTCCCCHHHHHHHHT
T ss_pred HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCC--CcEEecCCCcCCHHHHHHHHH
Confidence 5555555555555322111101111112222555555555532 2345555555656 6677776666554332 2345
Q ss_pred CCCCccEEeeccCCCCC--cchhhcCCCCCcEEEccc-----------CcCccchhh-hhhhcCCCCCCCCCCCEEEccC
Q 040109 287 HMASLRYLGLLSNRLRE--VPKFLGNMSSLKMLVLSY-----------NELRGELSE-FIQNVSSGSTKNSSLEWLYLAS 352 (598)
Q Consensus 287 ~l~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L~Ls~-----------n~l~~~~~~-~l~~l~~g~~~~~~L~~L~Ls~ 352 (598)
.+++|++|+++ +.+.. ++.....+++|++|++++ |.+++.... ....++ +|++|+++.
T Consensus 316 ~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-------~L~~L~l~~ 387 (592)
T 3ogk_B 316 KCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ-------ELEYMAVYV 387 (592)
T ss_dssp TCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCT-------TCSEEEEEE
T ss_pred hCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCc-------cCeEEEeec
Confidence 66666666666 33332 444445566666666662 444433222 223344 666666666
Q ss_pred ccccccCCC-CC-CCCcCcccccc----ccceEEE-EcCCcccccccccccceEeccCCc--CCCcCchhhhc-ccCCcE
Q 040109 353 NEITGTIPN-LG-GFPGMLMPLIY----FDKITVT-WKGGQYEYKSILGLIKIIDLSSNK--LGGEVPEEIMD-LVGLVA 422 (598)
Q Consensus 353 N~l~~~~p~-l~-~l~~l~~~~~~----~~~~~~~-~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~p~~l~~-l~~L~~ 422 (598)
|.+++..+. +. ++++|...... .+.+... ...........+++|+.|+++.|. +++..+..+.. +++|++
T Consensus 388 ~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~ 467 (592)
T 3ogk_B 388 SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRW 467 (592)
T ss_dssp SCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCE
T ss_pred CCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceE
Confidence 665542211 00 01122111110 0000000 000112224457778888886443 56555555544 677888
Q ss_pred EECcCCcCccc-CCcccCCCCCCCeeeCCCCccCCC-CcccccCCCCCCEEeCCCCccee
Q 040109 423 LNLSNNNLTGQ-ITPRIGQLKSLDFLDLSINHFFGG-IPSSLSRLRLLSVMDLSYNNFSG 480 (598)
Q Consensus 423 L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~ls~N~l~~ 480 (598)
|++++|++++. ++..+..+++|++|+|++|.+++. ++.....+++|++|++++|+++.
T Consensus 468 L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 468 MLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp EEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred eeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 88888877753 444556777888888888877544 33344567788888888887653
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=9.5e-24 Score=208.34 Aligned_cols=211 Identities=24% Similarity=0.171 Sum_probs=151.7
Q ss_pred CCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcc-hhhcCCCCCcEE
Q 040109 239 KSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVP-KFLGNMSSLKML 317 (598)
Q Consensus 239 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L 317 (598)
+++++|++++|.+++..+..+..++. |++|++++|.+++..+..+..+++|++|++++|.+++++ ..+.++++|++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPE--LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTT--CSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCccEEECCCCcccccCHhHhccccC--CcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 45666777777666555556666666 777777777777666666777777777777777777743 567777777777
Q ss_pred EcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccc
Q 040109 318 VLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIK 397 (598)
Q Consensus 318 ~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 397 (598)
++++|.+.+..+..+..++ +|++|++++|.+++. ..+..+..+++|+
T Consensus 106 ~l~~n~l~~~~~~~~~~l~-------~L~~L~l~~n~l~~~--------------------------~l~~~~~~l~~L~ 152 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLK-------TLKELNVAHNLIQSF--------------------------KLPEYFSNLTNLE 152 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCT-------TCCEEECCSSCCCCC--------------------------CCCGGGGGCTTCC
T ss_pred ECCCCCccccCchhcccCC-------CCCEEECcCCcccee--------------------------cCchhhccCCCCC
Confidence 7777777766665566655 777777777777631 0113345567788
Q ss_pred eEeccCCcCCCcCchhhhcccCCc----EEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeC
Q 040109 398 IIDLSSNKLGGEVPEEIMDLVGLV----ALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDL 473 (598)
Q Consensus 398 ~L~Ls~n~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 473 (598)
+|++++|++++..+..+..+++|+ +|++++|++++..+..+. ..+|++|++++|++++..+..+.++++|+.|++
T Consensus 153 ~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 231 (276)
T 2z62_A 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 231 (276)
T ss_dssp EEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEEC
T ss_pred EEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEc
Confidence 888888888877777777777777 888999998855555444 458999999999988766667788899999999
Q ss_pred CCCcceecCCCC
Q 040109 474 SYNNFSGKIPKG 485 (598)
Q Consensus 474 s~N~l~~~~p~~ 485 (598)
++|++.+.+|..
T Consensus 232 ~~N~~~c~c~~l 243 (276)
T 2z62_A 232 HTNPWDCSCPRI 243 (276)
T ss_dssp CSSCBCCCTTTT
T ss_pred cCCcccccCCch
Confidence 999988877754
No 72
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.91 E-value=7.8e-26 Score=248.28 Aligned_cols=350 Identities=12% Similarity=0.073 Sum_probs=227.3
Q ss_pred cCCCCCCEEECcCCCCCCCC---cchhcCCCCCCCEEECCCCCCCC----CCccccCCCCCCCEEEccCCCCCCCCCccc
Q 040109 109 LKLQHLTYLDLSWNNFSGSP---IPEFIGSLSKLSELALSSAQLAG----PIPHQLGNLSRLQVLDLRFNNLFSSGNLDW 181 (598)
Q Consensus 109 ~~l~~L~~L~Ls~n~l~~~~---~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 181 (598)
..+++|++|+|++|.+++.. ++.....+++|++|++++|.+++ .++..+.++++|++|++++|.+. ..+..
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~--~l~~~ 238 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL--ELVGF 238 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG--GGHHH
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH--HHHHH
Confidence 46789999999999876532 44456678899999999998873 34445567899999999998762 34456
Q ss_pred ccCCCCCCEEEcCCCcCC-CCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcc-hhh
Q 040109 182 LSYLSSLRYLDLGDCKLS-KFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIY-PWL 259 (598)
Q Consensus 182 l~~l~~L~~L~L~~n~l~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~l 259 (598)
+.++++|++|+++.+... .....+..+..+++|+.|+++++.....+. ....+++|++|++++|.+++... ..+
T Consensus 239 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~----~~~~~~~L~~L~Ls~~~l~~~~~~~~~ 314 (592)
T 3ogk_B 239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI----LFPFAAQIRKLDLLYALLETEDHCTLI 314 (592)
T ss_dssp HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG----GGGGGGGCCEEEETTCCCCHHHHHHHH
T ss_pred HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH----HHhhcCCCcEEecCCCcCCHHHHHHHH
Confidence 778888888888753222 112233556677788888887753322211 12223778888888887665433 334
Q ss_pred hhcCccCccEEEccCCccccccchhhcCCCCccEEeecc-----------CCCCC--cchhhcCCCCCcEEEcccCcCcc
Q 040109 260 LNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLS-----------NRLRE--VPKFLGNMSSLKMLVLSYNELRG 326 (598)
Q Consensus 260 ~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-----------n~l~~--lp~~l~~l~~L~~L~Ls~n~l~~ 326 (598)
..+++ |++|+++++...+.++.....+++|++|++++ |.++. ++.....+++|++|+++.|.+++
T Consensus 315 ~~~~~--L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~ 392 (592)
T 3ogk_B 315 QKCPN--LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN 392 (592)
T ss_dssp TTCTT--CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCH
T ss_pred HhCcC--CCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccH
Confidence 56677 88888874333333444446677888888883 55554 44445567888888888888877
Q ss_pred chhhhhhh-cCCCCCCCCCCCEEEcc----CccccccCCC------CCCCCcCccccccc--cceEEEEcCCcc-ccccc
Q 040109 327 ELSEFIQN-VSSGSTKNSSLEWLYLA----SNEITGTIPN------LGGFPGMLMPLIYF--DKITVTWKGGQY-EYKSI 392 (598)
Q Consensus 327 ~~~~~l~~-l~~g~~~~~~L~~L~Ls----~N~l~~~~p~------l~~l~~l~~~~~~~--~~~~~~~~~~~~-~~~~~ 392 (598)
..+..+.. ++ +|+.|+++ .|.+++...+ +.++++|....... +.+ .+... .....
T Consensus 393 ~~~~~l~~~~~-------~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l----~~~~~~~~~~~ 461 (592)
T 3ogk_B 393 ESLESIGTYLK-------NLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGL----TDLGLSYIGQY 461 (592)
T ss_dssp HHHHHHHHHCC-------SCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGC----CHHHHHHHHHS
T ss_pred HHHHHHHhhCC-------CCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCc----cHHHHHHHHHh
Confidence 76666655 55 78888886 4555542100 12233333222110 000 01111 12234
Q ss_pred ccccceEeccCCcCCCc-CchhhhcccCCcEEECcCCcCccc-CCcccCCCCCCCeeeCCCCccCCCCcccc-cCCCCCC
Q 040109 393 LGLIKIIDLSSNKLGGE-VPEEIMDLVGLVALNLSNNNLTGQ-ITPRIGQLKSLDFLDLSINHFFGGIPSSL-SRLRLLS 469 (598)
Q Consensus 393 l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~ 469 (598)
+++|+.|++++|++++. ++..+..+++|++|+|++|.+++. ++.....+++|++|+|++|++++.....+ ..++.+.
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~ 541 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWN 541 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEE
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcE
Confidence 78899999999999863 455567899999999999998865 44445678999999999999987644434 4567777
Q ss_pred EEeCCCCc
Q 040109 470 VMDLSYNN 477 (598)
Q Consensus 470 ~L~ls~N~ 477 (598)
...+..++
T Consensus 542 ~~~~~~~~ 549 (592)
T 3ogk_B 542 IELIPSRR 549 (592)
T ss_dssp EEEECCC-
T ss_pred EEEecCcc
Confidence 66666553
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.8e-23 Score=206.29 Aligned_cols=216 Identities=24% Similarity=0.253 Sum_probs=131.9
Q ss_pred cCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCccccc
Q 040109 104 INPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLS 183 (598)
Q Consensus 104 l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~ 183 (598)
+|..+. ++|++|++++|.+++. .+..+..+++|++|++++|.+++..+..|.++++|++|++++|.+ ....+..+.
T Consensus 22 ip~~l~--~~l~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~ 97 (276)
T 2z62_A 22 IPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFS 97 (276)
T ss_dssp CCSSSC--TTCCEEECTTCCCCEE-CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-CEECTTTTT
T ss_pred cCCCCC--CCccEEECCCCccccc-CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc-CccChhhhc
Confidence 454443 4688888888888764 445777888888888888888866666778888888888888876 333445567
Q ss_pred CCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcC
Q 040109 184 YLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVS 263 (598)
Q Consensus 184 ~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~ 263 (598)
++++|++|++++|.+..++. ..+..+++|++|++++|.+.+.. +|..+..++
T Consensus 98 ~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~--------------------------l~~~~~~l~ 149 (276)
T 2z62_A 98 GLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFK--------------------------LPEYFSNLT 149 (276)
T ss_dssp TCTTCCEEECTTSCCCCSTT--CCCTTCTTCCEEECCSSCCCCCC--------------------------CCGGGGGCT
T ss_pred CCccccEEECCCCCccccCc--hhcccCCCCCEEECcCCccceec--------------------------CchhhccCC
Confidence 77777777777777766532 23555555666665555555432 234444444
Q ss_pred ccCccEEEccCCccccccchhhcCCCCcc----EEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCC
Q 040109 264 SNLVDHIDLGSNRLHGSIPVAFGHMASLR----YLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGS 339 (598)
Q Consensus 264 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~----~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~ 339 (598)
+ |++|++++|.+++..+..+..+++|+ +|++++|.+++++.......+|+.|++++|++++..+..+..++
T Consensus 150 ~--L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~--- 224 (276)
T 2z62_A 150 N--LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLT--- 224 (276)
T ss_dssp T--CCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCC---
T ss_pred C--CCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccc---
Confidence 4 55555555555444444444333333 56666666665544443444566666666666655555555555
Q ss_pred CCCCCCCEEEccCccccccCC
Q 040109 340 TKNSSLEWLYLASNEITGTIP 360 (598)
Q Consensus 340 ~~~~~L~~L~Ls~N~l~~~~p 360 (598)
+|+.|++++|++++..|
T Consensus 225 ----~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 225 ----SLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp ----SCCEEECCSSCBCCCTT
T ss_pred ----cccEEEccCCcccccCC
Confidence 66666666666665443
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=3.9e-23 Score=203.21 Aligned_cols=206 Identities=23% Similarity=0.270 Sum_probs=153.7
Q ss_pred CccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcch-hhcCCCCCcEEE
Q 040109 240 SLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPK-FLGNMSSLKMLV 318 (598)
Q Consensus 240 ~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~ 318 (598)
+.+.++++++.++ .+|..+. .. +++|++++|.+++..+..|.++++|++|++++|.++.+|. .+.++++|++|+
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~--l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--AD--TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TT--CSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCCCC-ccCCCCC--CC--CCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 4556666666666 3444332 23 7777777777776666677778888888888888877654 456778888888
Q ss_pred cccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccce
Q 040109 319 LSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKI 398 (598)
Q Consensus 319 Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 398 (598)
+++|.+.+..+..+..++ +|++|++++|.+++..+. .+..+++|++
T Consensus 92 l~~n~l~~~~~~~~~~l~-------~L~~L~l~~n~l~~~~~~---------------------------~~~~l~~L~~ 137 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLV-------NLAELRLDRNQLKSLPPR---------------------------VFDSLTKLTY 137 (270)
T ss_dssp CCSSCCCCCCTTTTTTCS-------SCCEEECCSSCCCCCCTT---------------------------TTTTCTTCCE
T ss_pred CCCCcCCcCCHhHccccc-------CCCEEECCCCccCeeCHH---------------------------HhCcCcCCCE
Confidence 888888777776666666 788888888877754332 2344667888
Q ss_pred EeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcc
Q 040109 399 IDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNF 478 (598)
Q Consensus 399 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 478 (598)
|+|++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++
T Consensus 138 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 138 LSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 88888888866666688889999999999999876666788889999999999998876666788888999999999988
Q ss_pred eecCCC
Q 040109 479 SGKIPK 484 (598)
Q Consensus 479 ~~~~p~ 484 (598)
.+..+.
T Consensus 218 ~c~c~~ 223 (270)
T 2o6q_A 218 DCTCNG 223 (270)
T ss_dssp CCSSSS
T ss_pred eCCCcc
Confidence 876653
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=1.9e-23 Score=207.30 Aligned_cols=201 Identities=25% Similarity=0.213 Sum_probs=133.1
Q ss_pred CCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEE
Q 040109 239 KSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLV 318 (598)
Q Consensus 239 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 318 (598)
+++++++++++.++ .+|..+. +. ++.|++++|.+++..+..+..+++|++|++++|.+++++.. ..+++|++|+
T Consensus 10 ~~l~~l~~~~~~l~-~ip~~~~--~~--l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 10 ASHLEVNCDKRNLT-ALPPDLP--KD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp TTCCEEECTTSCCS-SCCSCCC--TT--CCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred CCccEEECCCCCCC-cCCCCCC--CC--CCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence 77888888888887 4454443 34 78888888888877777788888888888888888776653 6677778888
Q ss_pred cccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccce
Q 040109 319 LSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKI 398 (598)
Q Consensus 319 Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 398 (598)
+++|++.. +|..+..++ +|++|++++|++++..| ..+..+++|++
T Consensus 84 Ls~N~l~~-l~~~~~~l~-------~L~~L~l~~N~l~~l~~---------------------------~~~~~l~~L~~ 128 (290)
T 1p9a_G 84 LSHNQLQS-LPLLGQTLP-------ALTVLDVSFNRLTSLPL---------------------------GALRGLGELQE 128 (290)
T ss_dssp CCSSCCSS-CCCCTTTCT-------TCCEEECCSSCCCCCCS---------------------------STTTTCTTCCE
T ss_pred CCCCcCCc-CchhhccCC-------CCCEEECCCCcCcccCH---------------------------HHHcCCCCCCE
Confidence 88777763 344444444 67777777776664322 12234556666
Q ss_pred EeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcc
Q 040109 399 IDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNF 478 (598)
Q Consensus 399 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 478 (598)
|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|+.+++++|++
T Consensus 129 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred EECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 667766666555555666666666777666666444445566666666666666665 5556666666666666666666
Q ss_pred eec
Q 040109 479 SGK 481 (598)
Q Consensus 479 ~~~ 481 (598)
.+.
T Consensus 208 ~C~ 210 (290)
T 1p9a_G 208 LCN 210 (290)
T ss_dssp CCS
T ss_pred cCc
Confidence 543
No 76
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=1.1e-25 Score=247.32 Aligned_cols=354 Identities=16% Similarity=0.107 Sum_probs=198.5
Q ss_pred cEEEEEcCCCCCCCCCCCceecCcccc-CCCCCCEEECcCC-CCCCCCcchhcCCCCCCCEEECCCCCCCCCCcccc---
Q 040109 83 HVLGLDLRALSDSPVDALKGTINPSLL-KLQHLTYLDLSWN-NFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQL--- 157 (598)
Q Consensus 83 ~v~~l~l~~~~~~~~~~l~g~l~~~l~-~l~~L~~L~Ls~n-~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l--- 157 (598)
.++.+++++ +.+++..+..+. .+++|++|+|++| .++...++..+..+++|++|+|++|.+++..+..+
T Consensus 106 ~L~~L~L~~------~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 106 WLEEIRLKR------MVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp TCCEEEEES------CBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred CCCeEEeeC------cEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 466677766 445554444454 5677777777776 44332234444467777777777777665433333
Q ss_pred -CCCCCCCEEEccCCCCCCCCCc----ccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCC--------
Q 040109 158 -GNLSRLQVLDLRFNNLFSSGNL----DWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDL-------- 224 (598)
Q Consensus 158 -~~l~~L~~L~Ls~n~l~~~~~~----~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l-------- 224 (598)
..+++|++|++++|. ..... ..+..+++|++|++++|.. ...++..+..+++|++|+++.+..
T Consensus 180 ~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~--~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 255 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVP--LEKLATLLQRAPQLEELGTGGYTAEVRPDVYS 255 (594)
T ss_dssp CTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSC--HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH
T ss_pred hhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCc--HHHHHHHHhcCCcceEcccccccCccchhhHH
Confidence 356677777777765 11111 1124457777777777621 112445556666666666544421
Q ss_pred ------------------CCCCCChhh-hccccCCccEEEccCCCCCCCcch-hhhhcCccCccEEEccCCcccc-ccch
Q 040109 225 ------------------PPISTPSLL-HLNYSKSLEVIDLSNNYLTNSIYP-WLLNVSSNLVDHIDLGSNRLHG-SIPV 283 (598)
Q Consensus 225 ------------------~~~~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~-~l~~~~~~~L~~L~L~~n~l~~-~~p~ 283 (598)
.......+. ....+++|++|++++|.+++.... .+..+++ |++|++++| +++ .++.
T Consensus 256 ~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~--L~~L~l~~~-~~~~~l~~ 332 (594)
T 2p1m_B 256 GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPK--LQRLWVLDY-IEDAGLEV 332 (594)
T ss_dssp HHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTT--CCEEEEEGG-GHHHHHHH
T ss_pred HHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCC--cCEEeCcCc-cCHHHHHH
Confidence 111100010 001125666666666665432222 2334555 666666666 322 1222
Q ss_pred hhcCCCCccEEeecc---------CCCCC--cchhhcCCCCCcEEEcccCcCccchhhhhh-hcCCCCCCCCCCCEEEcc
Q 040109 284 AFGHMASLRYLGLLS---------NRLRE--VPKFLGNMSSLKMLVLSYNELRGELSEFIQ-NVSSGSTKNSSLEWLYLA 351 (598)
Q Consensus 284 ~l~~l~~L~~L~Ls~---------n~l~~--lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~g~~~~~~L~~L~Ls 351 (598)
....+++|++|++++ +.+++ +......+++|+.|.++.|.+++..+..+. .++ +|+.|+++
T Consensus 333 l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~-------~L~~L~L~ 405 (594)
T 2p1m_B 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRP-------NMTRFRLC 405 (594)
T ss_dssp HHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCT-------TCCEEEEE
T ss_pred HHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCC-------CcceeEee
Confidence 223456666666632 33433 222223456666666666666655554443 244 67777766
Q ss_pred --C----ccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhc-ccCCcEEE
Q 040109 352 --S----NEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMD-LVGLVALN 424 (598)
Q Consensus 352 --~----N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~ 424 (598)
+ +.+++. |. ..........+++|+.|++++ .+++..+..+.. +++|+.|+
T Consensus 406 ~~~~~~~~~l~~~-~~---------------------~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~ 462 (594)
T 2p1m_B 406 IIEPKAPDYLTLE-PL---------------------DIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLS 462 (594)
T ss_dssp ESSTTCCCTTTCC-CT---------------------HHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEE
T ss_pred cccCCCcccccCC-ch---------------------hhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEee
Confidence 2 222210 00 011112245577888888877 676666666665 78899999
Q ss_pred CcCCcCcccCCccc-CCCCCCCeeeCCCCccCCCCcc-cccCCCCCCEEeCCCCcce
Q 040109 425 LSNNNLTGQITPRI-GQLKSLDFLDLSINHFFGGIPS-SLSRLRLLSVMDLSYNNFS 479 (598)
Q Consensus 425 Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~ls~N~l~ 479 (598)
|++|.+++..+..+ ..+++|++|+|++|.+++..+. ....+++|++|++++|+++
T Consensus 463 L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 463 VAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp EESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred ccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 99888876655554 5678899999998888654433 3455788899999888874
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=3.2e-22 Score=198.47 Aligned_cols=202 Identities=22% Similarity=0.180 Sum_probs=133.2
Q ss_pred ccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCC
Q 040109 108 LLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSS 187 (598)
Q Consensus 108 l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~ 187 (598)
+.+++++++++++++.++. +|..+. +++++|+|++|.+++..+..|..+++|++|++++|.+.. ......+++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~--ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~l~~ 78 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA--LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK---LQVDGTLPV 78 (290)
T ss_dssp EECSTTCCEEECTTSCCSS--CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE---EECCSCCTT
T ss_pred ccccCCccEEECCCCCCCc--CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc---ccCCCCCCc
Confidence 6678889999999999884 676654 789999999999988778889999999999999998732 222367888
Q ss_pred CCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCc
Q 040109 188 LRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLV 267 (598)
Q Consensus 188 L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L 267 (598)
|++|++++|.++.++ ..+..+++|++|++++|++++.++..+..+ ++|++|++++|++++..+..+..+++ |
T Consensus 79 L~~L~Ls~N~l~~l~---~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~--L 150 (290)
T 1p9a_G 79 LGTLDLSHNQLQSLP---LLGQTLPALTVLDVSFNRLTSLPLGALRGL---GELQELYLKGNELKTLPPGLLTPTPK--L 150 (290)
T ss_dssp CCEEECCSSCCSSCC---CCTTTCTTCCEEECCSSCCCCCCSSTTTTC---TTCCEEECTTSCCCCCCTTTTTTCTT--C
T ss_pred CCEEECCCCcCCcCc---hhhccCCCCCEEECCCCcCcccCHHHHcCC---CCCCEEECCCCCCCccChhhcccccC--C
Confidence 888888888887654 355667777777777777776655433333 56666666666665444444444555 5
Q ss_pred cEEEccCCccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcC
Q 040109 268 DHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNEL 324 (598)
Q Consensus 268 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l 324 (598)
+.|++++|++++..+..+..+++|++|++++|+++.+|..+...++|+.|++++|++
T Consensus 151 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 555555555554444444555555555555555555555444444555555555544
No 78
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=8.3e-24 Score=217.26 Aligned_cols=234 Identities=23% Similarity=0.243 Sum_probs=130.8
Q ss_pred EEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCc----cccCCCC-CCCEEEccCCCCCCCCCcccccCC-----
Q 040109 116 YLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIP----HQLGNLS-RLQVLDLRFNNLFSSGNLDWLSYL----- 185 (598)
Q Consensus 116 ~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~-~L~~L~Ls~n~l~~~~~~~~l~~l----- 185 (598)
++++++|.+++. +|..+...++|++|+|++|.+++..+ ..+..++ +|++|++++|.+ ....+..+..+
T Consensus 2 ~~~ls~n~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 2 NYKLTLHPGSNP-VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL-GFKNSDELVQILAAIP 79 (362)
T ss_dssp EEECCCCTTCCH-HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCG-GGSCHHHHHHHHHTSC
T ss_pred ccccccccchHH-HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCC-CHHHHHHHHHHHhccC
Confidence 355666666664 66666555557777777776665544 5555666 667777766665 22222223322
Q ss_pred CCCCEEEcCCCcCCCCCc--hhHhhcCC-CCCcEEeccCcCCCCCCCChhhh-c-cccCCccEEEccCCCCCCCcchh--
Q 040109 186 SSLRYLDLGDCKLSKFSN--WFQVLSNL-RSLTTLYLGHCDLPPISTPSLLH-L-NYSKSLEVIDLSNNYLTNSIYPW-- 258 (598)
Q Consensus 186 ~~L~~L~L~~n~l~~~~~--~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~-~-~~~~~L~~L~Ls~n~l~~~~~~~-- 258 (598)
++|++|++++|.+++... +...+..+ ++|++|++++|.+++.....+.. + ...++|++|++++|.+++..+..
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 666666666666654311 11234444 66777777777766554422211 1 11246777777777766533332
Q ss_pred --hhhcC-ccCccEEEccCCccccccchhhc----CC-CCccEEeeccCCCCC-----cchhhcC-CCCCcEEEcccCcC
Q 040109 259 --LLNVS-SNLVDHIDLGSNRLHGSIPVAFG----HM-ASLRYLGLLSNRLRE-----VPKFLGN-MSSLKMLVLSYNEL 324 (598)
Q Consensus 259 --l~~~~-~~~L~~L~L~~n~l~~~~p~~l~----~l-~~L~~L~Ls~n~l~~-----lp~~l~~-l~~L~~L~Ls~n~l 324 (598)
+...+ . |++|++++|.+++..+..+. .. ++|++|++++|.+++ ++..+.. .++|++|++++|.+
T Consensus 160 ~~l~~~~~~--L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 160 QILAAIPAN--VNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp HHHHTSCTT--CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred HHHhcCCcc--ccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 23333 4 77777777777665554333 33 477777777777765 4555554 34777777777777
Q ss_pred ccchhhhhhhcCCCCCCCCCCCEEEccCcccc
Q 040109 325 RGELSEFIQNVSSGSTKNSSLEWLYLASNEIT 356 (598)
Q Consensus 325 ~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~ 356 (598)
.+..+..+..+. ..+++|+.|++++|.+.
T Consensus 238 ~~~~~~~l~~~~---~~l~~L~~L~L~~n~l~ 266 (362)
T 3goz_A 238 HGPSLENLKLLK---DSLKHLQTVYLDYDIVK 266 (362)
T ss_dssp CCCCHHHHHHTT---TTTTTCSEEEEEHHHHT
T ss_pred CcHHHHHHHHHH---hcCCCccEEEeccCCcc
Confidence 665554443221 11225666666666643
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=6.3e-23 Score=201.90 Aligned_cols=200 Identities=25% Similarity=0.294 Sum_probs=142.8
Q ss_pred CCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcc-hhhcCCCCCcEE
Q 040109 239 KSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVP-KFLGNMSSLKML 317 (598)
Q Consensus 239 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L 317 (598)
++|+.|++++|.++. .+.+..++. |++|++++|.+++. ..+..+++|++|++++|.+++++ ..+..+++|++|
T Consensus 41 ~~L~~L~l~~~~i~~--~~~l~~l~~--L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 41 NSIDQIIANNSDIKS--VQGIQYLPN--VRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp TTCCEEECTTSCCCC--CTTGGGCTT--CCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cceeeeeeCCCCccc--ccccccCCC--CcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 555666666655542 123455555 66666666666542 25666677777777777776644 345667777777
Q ss_pred EcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccc
Q 040109 318 VLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIK 397 (598)
Q Consensus 318 ~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 397 (598)
++++|.+++..+..+..++ +|++|++++|.+++..+. .++.+++|+
T Consensus 115 ~L~~n~l~~~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~---------------------------~~~~l~~L~ 160 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLT-------NLTYLNLAHNQLQSLPKG---------------------------VFDKLTNLT 160 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCT-------TCCEEECCSSCCCCCCTT---------------------------TTTTCTTCC
T ss_pred ECCCCcCCccCHHHhccCC-------CCCEEECCCCccCccCHH---------------------------HhccCccCC
Confidence 7777777766666666665 677777777777643331 223456788
Q ss_pred eEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCc
Q 040109 398 IIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNN 477 (598)
Q Consensus 398 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~ 477 (598)
.|++++|++++..+..+..+++|+.|++++|++++..|..+..+++|++|++++|.+.+. ++.|+.|+++.|+
T Consensus 161 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 161 ELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINK 233 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHH
T ss_pred EEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHh
Confidence 888888888877777788899999999999999987777889999999999999988754 4578899999999
Q ss_pred ceecCCCC
Q 040109 478 FSGKIPKG 485 (598)
Q Consensus 478 l~~~~p~~ 485 (598)
++|.+|..
T Consensus 234 ~~g~ip~~ 241 (272)
T 3rfs_A 234 HSGVVRNS 241 (272)
T ss_dssp TGGGBBCT
T ss_pred CCCcccCc
Confidence 99999874
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.8e-22 Score=198.59 Aligned_cols=196 Identities=21% Similarity=0.311 Sum_probs=95.3
Q ss_pred CEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCCEEEcC
Q 040109 115 TYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLG 194 (598)
Q Consensus 115 ~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~ 194 (598)
..+++..+.+... .....+++|++|++++|.++. + ..+..+++|++|++++|.+.. .+.+..+++|++|+++
T Consensus 22 ~~l~l~~~~~~~~---~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~---~~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 22 IKANLKKKSVTDA---VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD---ISALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHTCSCTTSE---ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC---CGGGTTCTTCCEEECT
T ss_pred HHHHhcCcccccc---cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC---chhhcCCCCCCEEECC
Confidence 3344444444421 223345666666666666552 2 235555666666666655421 2244555555555555
Q ss_pred CCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEEccC
Q 040109 195 DCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGS 274 (598)
Q Consensus 195 ~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~ 274 (598)
+|.+++++. ..+..+++|++|++++| .+++..+..+..+++ |++|++++
T Consensus 94 ~n~l~~~~~--~~~~~l~~L~~L~L~~n---------------------------~l~~~~~~~~~~l~~--L~~L~L~~ 142 (272)
T 3rfs_A 94 GNQLQSLPN--GVFDKLTNLKELVLVEN---------------------------QLQSLPDGVFDKLTN--LTYLNLAH 142 (272)
T ss_dssp TSCCCCCCT--TTTTTCTTCCEEECTTS---------------------------CCCCCCTTTTTTCTT--CCEEECCS
T ss_pred CCccCccCh--hHhcCCcCCCEEECCCC---------------------------cCCccCHHHhccCCC--CCEEECCC
Confidence 555554322 23344444444444444 444333333344444 55555555
Q ss_pred CccccccchhhcCCCCccEEeeccCCCCCcch-hhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCc
Q 040109 275 NRLHGSIPVAFGHMASLRYLGLLSNRLREVPK-FLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASN 353 (598)
Q Consensus 275 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N 353 (598)
|.+++..+..+..+++|++|++++|+++++|. .+..+++|++|++++|++++..+..+..++ +|+.|++++|
T Consensus 143 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-------~L~~L~l~~N 215 (272)
T 3rfs_A 143 NQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT-------SLQYIWLHDN 215 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-------TCCEEECCSS
T ss_pred CccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCc-------CCCEEEccCC
Confidence 55554444444555555555555555555332 345555555555555555555544444444 4555555555
Q ss_pred ccc
Q 040109 354 EIT 356 (598)
Q Consensus 354 ~l~ 356 (598)
.+.
T Consensus 216 ~~~ 218 (272)
T 3rfs_A 216 PWD 218 (272)
T ss_dssp CBC
T ss_pred Ccc
Confidence 444
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=3.4e-23 Score=207.95 Aligned_cols=82 Identities=29% Similarity=0.266 Sum_probs=46.4
Q ss_pred ccccceEeccCCcCCCcCchhhhcc---cCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCC
Q 040109 393 LGLIKIIDLSSNKLGGEVPEEIMDL---VGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLS 469 (598)
Q Consensus 393 l~~L~~L~Ls~n~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 469 (598)
+++|++|||++|++++..|..+..+ ++|++|+|++|+++ .+|..+. ++|++|+|++|++++. |. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 3455555555555554445444444 46666666666666 4555443 5666666666666543 22 45556666
Q ss_pred EEeCCCCcce
Q 040109 470 VMDLSYNNFS 479 (598)
Q Consensus 470 ~L~ls~N~l~ 479 (598)
.|++++|+++
T Consensus 298 ~L~L~~N~l~ 307 (310)
T 4glp_A 298 NLTLDGNPFL 307 (310)
T ss_dssp CEECSSTTTS
T ss_pred EEECcCCCCC
Confidence 6666666654
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=5.8e-23 Score=210.93 Aligned_cols=186 Identities=21% Similarity=0.214 Sum_probs=101.2
Q ss_pred EEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCc----ccccCCC-CCCEEEcCCCcCCCCCchhHhhcCCCCCc
Q 040109 141 ELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNL----DWLSYLS-SLRYLDLGDCKLSKFSNWFQVLSNLRSLT 215 (598)
Q Consensus 141 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~----~~l~~l~-~L~~L~L~~n~l~~~~~~~~~l~~l~~L~ 215 (598)
++++++|.+++.+|..+...++|++|++++|.+ ..... ..+..++ +|++|++++|.++... +..+..+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~--~~~l~~~---- 74 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNL-YSISTVELIQAFANTPASVTSLNLSGNSLGFKN--SDELVQI---- 74 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCG-GGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSC--HHHHHHH----
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCC-ChHHHHHHHHHHHhCCCceeEEECcCCCCCHHH--HHHHHHH----
Confidence 467888888888777777777788888888876 22322 3455555 6666666666655431 1222221
Q ss_pred EEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhc-----CccCccEEEccCCccccccchhhc----
Q 040109 216 TLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNV-----SSNLVDHIDLGSNRLHGSIPVAFG---- 286 (598)
Q Consensus 216 ~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-----~~~~L~~L~L~~n~l~~~~p~~l~---- 286 (598)
.....++|++|++++|.+++..+..+... +. |++|++++|.+++..+..+.
T Consensus 75 ------------------l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~--L~~L~Ls~N~l~~~~~~~l~~~l~ 134 (362)
T 3goz_A 75 ------------------LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFT--ITVLDLGWNDFSSKSSSEFKQAFS 134 (362)
T ss_dssp ------------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT--CCEEECCSSCGGGSCHHHHHHHHT
T ss_pred ------------------HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCC--ccEEECcCCcCCcHHHHHHHHHHH
Confidence 00001344455555555444433333222 34 66666666666554443332
Q ss_pred C-CCCccEEeeccCCCCC-----cchhhcCCC-CCcEEEcccCcCccchhhhhhhcCCCCCCC-CCCCEEEccCcccc
Q 040109 287 H-MASLRYLGLLSNRLRE-----VPKFLGNMS-SLKMLVLSYNELRGELSEFIQNVSSGSTKN-SSLEWLYLASNEIT 356 (598)
Q Consensus 287 ~-l~~L~~L~Ls~n~l~~-----lp~~l~~l~-~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~-~~L~~L~Ls~N~l~ 356 (598)
. .++|++|++++|.+++ ++..+..++ +|++|++++|.+++..+..+...- ..+ ++|+.|++++|.++
T Consensus 135 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l---~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 135 NLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL---ASIPASVTSLDLSANLLG 209 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH---HTSCTTCCEEECTTSCGG
T ss_pred hCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHH---HhCCCCCCEEECCCCCCC
Confidence 2 2466666666666663 334445554 677777777777666655444320 000 15666666666655
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=7.3e-22 Score=198.22 Aligned_cols=225 Identities=20% Similarity=0.213 Sum_probs=180.8
Q ss_pred CCccEEEccCCCCCCCcch---hhhhcCccCccEEEccCCccccccchhh--cCCCCccEEeeccCCCCC-cc----hhh
Q 040109 239 KSLEVIDLSNNYLTNSIYP---WLLNVSSNLVDHIDLGSNRLHGSIPVAF--GHMASLRYLGLLSNRLRE-VP----KFL 308 (598)
Q Consensus 239 ~~L~~L~Ls~n~l~~~~~~---~l~~~~~~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~-lp----~~l 308 (598)
..++.+.+.++.++..... .....+. |++|++++|.+++..|..+ ..+++|++|++++|.+++ .+ ..+
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~--L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSR--LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSC--CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCc--eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 4577888888777532211 1223455 9999999999999998888 889999999999999987 33 345
Q ss_pred cCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCcccccc--CCCCCCCCcCccccccccceEEEEcCCc
Q 040109 309 GNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGT--IPNLGGFPGMLMPLIYFDKITVTWKGGQ 386 (598)
Q Consensus 309 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~--~p~l~~l~~l~~~~~~~~~~~~~~~~~~ 386 (598)
..+++|++|++++|.+.+..+..+..++ +|++|++++|++.+. ++.
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~-------~L~~L~Ls~N~l~~~~~~~~------------------------- 189 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFP-------ALTSLDLSDNPGLGERGLMA------------------------- 189 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCT-------TCCEEECCSCTTCHHHHHHT-------------------------
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCC-------CCCEEECCCCCCccchhhhH-------------------------
Confidence 5789999999999999998888888887 899999999998642 110
Q ss_pred ccccccccccceEeccCCcCCCcCch----hhhcccCCcEEECcCCcCcccCCcccCCC---CCCCeeeCCCCccCCCCc
Q 040109 387 YEYKSILGLIKIIDLSSNKLGGEVPE----EIMDLVGLVALNLSNNNLTGQITPRIGQL---KSLDFLDLSINHFFGGIP 459 (598)
Q Consensus 387 ~~~~~~l~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p 459 (598)
....+.+++|++|+|++|+++ .++. .+..+++|++|+|++|++++.+|..+..+ ++|++|+|++|+++ .+|
T Consensus 190 ~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp 267 (310)
T 4glp_A 190 ALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVP 267 (310)
T ss_dssp TSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCC
T ss_pred HHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chh
Confidence 012245778999999999997 3343 35788999999999999998888888777 69999999999998 778
Q ss_pred ccccCCCCCCEEeCCCCcceecCCCCCccCccCCCccCCCCCC
Q 040109 460 SSLSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPEL 502 (598)
Q Consensus 460 ~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~gnp~l 502 (598)
..+. ++|++|++++|++++ +|....+++++.+.+++|+..
T Consensus 268 ~~~~--~~L~~L~Ls~N~l~~-~~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 268 KGLP--AKLRVLDLSSNRLNR-APQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp SCCC--SCCSCEECCSCCCCS-CCCTTSCCCCSCEECSSTTTS
T ss_pred hhhc--CCCCEEECCCCcCCC-CchhhhCCCccEEECcCCCCC
Confidence 7764 899999999999995 455567889999999999864
No 84
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.88 E-value=2.8e-24 Score=235.91 Aligned_cols=371 Identities=16% Similarity=0.134 Sum_probs=206.6
Q ss_pred cCCCCCCEEECcCCCCCCCCcchhcC-CCCCCCEEECCCC-CCCCC-CccccCCCCCCCEEEccCCCCCCCCCcc----c
Q 040109 109 LKLQHLTYLDLSWNNFSGSPIPEFIG-SLSKLSELALSSA-QLAGP-IPHQLGNLSRLQVLDLRFNNLFSSGNLD----W 181 (598)
Q Consensus 109 ~~l~~L~~L~Ls~n~l~~~~~p~~l~-~l~~L~~L~Ls~n-~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~~~~----~ 181 (598)
..+++|++|+|++|.+++. .+..+. .+++|++|+|++| .++.. ++..+.++++|++|++++|.+.. .... .
T Consensus 102 ~~~~~L~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~-~~~~~l~~~ 179 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDD-CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDD-VSGHWLSHF 179 (594)
T ss_dssp HHCTTCCEEEEESCBCCHH-HHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEEC-CCGGGGGGS
T ss_pred HhCCCCCeEEeeCcEEcHH-HHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCC-cchHHHHHH
Confidence 3566777777777776653 444443 5677777777777 34321 33334467777777777776522 2222 2
Q ss_pred ccCCCCCCEEEcCCCcCCCC--CchhHhhcCCCCCcEEeccCcC-CCCCCCChhhhccccCCccEEEccCCCCC------
Q 040109 182 LSYLSSLRYLDLGDCKLSKF--SNWFQVLSNLRSLTTLYLGHCD-LPPISTPSLLHLNYSKSLEVIDLSNNYLT------ 252 (598)
Q Consensus 182 l~~l~~L~~L~L~~n~l~~~--~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~------ 252 (598)
...+++|++|++++|. ..+ ..+...+..+++|++|++++|. +.+ . .......++|+.|+++.+...
T Consensus 180 ~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l---~~~~~~~~~L~~L~l~~~~~~~~~~~~ 254 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEK-L---ATLLQRAPQLEELGTGGYTAEVRPDVY 254 (594)
T ss_dssp CTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-H---HHHHHHCTTCSEEECSBCCCCCCHHHH
T ss_pred hhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-H---HHHHhcCCcceEcccccccCccchhhH
Confidence 2356677777777775 211 1122233446777777777762 222 1 111122266777775544210
Q ss_pred CCcchhhhhcCccCccEE-EccCCccccccchhhcCCCCccEEeeccCCCCC--cchhhcCCCCCcEEEcccCcCccc-h
Q 040109 253 NSIYPWLLNVSSNLVDHI-DLGSNRLHGSIPVAFGHMASLRYLGLLSNRLRE--VPKFLGNMSSLKMLVLSYNELRGE-L 328 (598)
Q Consensus 253 ~~~~~~l~~~~~~~L~~L-~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L~Ls~n~l~~~-~ 328 (598)
..++..+.++++ |+.| .+.+... +.++..+..+++|++|++++|.++. ++..+..+++|+.|++++| +... +
T Consensus 255 ~~l~~~l~~~~~--L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l 330 (594)
T 2p1m_B 255 SGLSVALSGCKE--LRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGL 330 (594)
T ss_dssp HHHHHHHHTCTT--CCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHH
T ss_pred HHHHHHHhcCCC--cccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHH
Confidence 012223444444 4444 2222211 2334444456677777777776554 3334556677777777766 3322 2
Q ss_pred hhhhhhcCCCCCCCCCCCEEEccC---------ccccccC-CCC-CCCCcCccccccccceEEEEcCCcccccccccccc
Q 040109 329 SEFIQNVSSGSTKNSSLEWLYLAS---------NEITGTI-PNL-GGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIK 397 (598)
Q Consensus 329 ~~~l~~l~~g~~~~~~L~~L~Ls~---------N~l~~~~-p~l-~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 397 (598)
+.....++ +|++|++++ +.+++.. ..+ .++++|.........+. ..........+++|+
T Consensus 331 ~~l~~~~~-------~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~---~~~~~~l~~~~~~L~ 400 (594)
T 2p1m_B 331 EVLASTCK-------DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMT---NAALITIARNRPNMT 400 (594)
T ss_dssp HHHHHHCT-------TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCC---HHHHHHHHHHCTTCC
T ss_pred HHHHHhCC-------CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcC---HHHHHHHHhhCCCcc
Confidence 22222344 677776633 2332110 000 01122221111000000 000111223578999
Q ss_pred eEecc--C----CcCCCc-----CchhhhcccCCcEEECcCCcCcccCCcccCC-CCCCCeeeCCCCccCCCCcccc-cC
Q 040109 398 IIDLS--S----NKLGGE-----VPEEIMDLVGLVALNLSNNNLTGQITPRIGQ-LKSLDFLDLSINHFFGGIPSSL-SR 464 (598)
Q Consensus 398 ~L~Ls--~----n~l~~~-----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~l-~~ 464 (598)
.|+++ + +.+++. ++..+..+++|+.|++++ .+++..+..+.. +++|++|+|++|.+++..+..+ ..
T Consensus 401 ~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 479 (594)
T 2p1m_B 401 RFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSG 479 (594)
T ss_dssp EEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHH
T ss_pred eeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhc
Confidence 99999 4 566622 222367889999999988 777666666665 8999999999999977665555 67
Q ss_pred CCCCCEEeCCCCcceecCCC--CCccCccCCCccCCCCC
Q 040109 465 LRLLSVMDLSYNNFSGKIPK--GTQLQRFGASTYAGNPE 501 (598)
Q Consensus 465 l~~L~~L~ls~N~l~~~~p~--~~~~~~l~~~~~~gnp~ 501 (598)
+++|++|++++|++++..+. ...+++++.+.+.+|+.
T Consensus 480 ~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 480 CDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred CCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 99999999999998643221 23467888888998875
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=9.6e-24 Score=218.88 Aligned_cols=248 Identities=17% Similarity=0.157 Sum_probs=145.0
Q ss_pred cccCCCCCCEEEcCCCcCCCCC--chhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchh
Q 040109 181 WLSYLSSLRYLDLGDCKLSKFS--NWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPW 258 (598)
Q Consensus 181 ~l~~l~~L~~L~L~~n~l~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 258 (598)
.+..+++|++|++++|.+.... .+...+..+++|++|++++|.+... ++.+|..
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l------------------------~~~~~~~ 82 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRV------------------------KDEIPEA 82 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSC------------------------GGGSHHH
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCcc------------------------ccchhHH
Confidence 3555666777777777665421 1222355566666666666544322 1122222
Q ss_pred h-------hhcCccCccEEEccCCcccc----ccchhhcCCCCccEEeeccCCCCC-----cchhhcCC---------CC
Q 040109 259 L-------LNVSSNLVDHIDLGSNRLHG----SIPVAFGHMASLRYLGLLSNRLRE-----VPKFLGNM---------SS 313 (598)
Q Consensus 259 l-------~~~~~~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l---------~~ 313 (598)
+ ..++. |++|++++|.+++ .+|..+..+++|++|++++|.++. ++..+..+ ++
T Consensus 83 ~~~l~~~l~~~~~--L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~ 160 (386)
T 2ca6_A 83 LRLLLQALLKCPK--LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPP 160 (386)
T ss_dssp HHHHHHHHTTCTT--CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHhhCCc--ccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCC
Confidence 2 33344 5555555555554 244455555555555555555543 22223333 56
Q ss_pred CcEEEcccCcCc-cchh---hhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccc
Q 040109 314 LKMLVLSYNELR-GELS---EFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEY 389 (598)
Q Consensus 314 L~~L~Ls~n~l~-~~~~---~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~ 389 (598)
|++|++++|++. +..+ ..+..++ +|++|++++|.++..-- ....+..
T Consensus 161 L~~L~L~~n~l~~~~~~~l~~~l~~~~-------~L~~L~L~~n~l~~~g~----------------------~~l~~~~ 211 (386)
T 2ca6_A 161 LRSIICGRNRLENGSMKEWAKTFQSHR-------LLHTVKMVQNGIRPEGI----------------------EHLLLEG 211 (386)
T ss_dssp CCEEECCSSCCTGGGHHHHHHHHHHCT-------TCCEEECCSSCCCHHHH----------------------HHHHHTT
T ss_pred CcEEECCCCCCCcHHHHHHHHHHHhCC-------CcCEEECcCCCCCHhHH----------------------HHHHHHH
Confidence 666666666665 2333 2344444 66666666666651000 0000012
Q ss_pred cccccccceEeccCCcCC----CcCchhhhcccCCcEEECcCCcCccc----CCccc--CCCCCCCeeeCCCCccCC---
Q 040109 390 KSILGLIKIIDLSSNKLG----GEVPEEIMDLVGLVALNLSNNNLTGQ----ITPRI--GQLKSLDFLDLSINHFFG--- 456 (598)
Q Consensus 390 ~~~l~~L~~L~Ls~n~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l--~~l~~L~~L~Ls~N~l~~--- 456 (598)
+..+++|+.|+|++|.++ +.+|..+..+++|++|+|++|++++. ++..+ +.+++|++|+|++|.+++
T Consensus 212 l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~ 291 (386)
T 2ca6_A 212 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV 291 (386)
T ss_dssp GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH
T ss_pred hhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHH
Confidence 344567777777777775 46777788888888888888888765 55666 337888888888888886
Q ss_pred -CCcccc-cCCCCCCEEeCCCCcceecCC
Q 040109 457 -GIPSSL-SRLRLLSVMDLSYNNFSGKIP 483 (598)
Q Consensus 457 -~~p~~l-~~l~~L~~L~ls~N~l~~~~p 483 (598)
.+|..+ .++++|++|++++|++++..|
T Consensus 292 ~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 292 RTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 477766 668888888888888876543
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=1.1e-22 Score=206.80 Aligned_cols=250 Identities=20% Similarity=0.219 Sum_probs=166.7
Q ss_pred CCEEEcCCCcCCCCCchhHhhcCC--CCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCC-cchhhhhcCc
Q 040109 188 LRYLDLGDCKLSKFSNWFQVLSNL--RSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNS-IYPWLLNVSS 264 (598)
Q Consensus 188 L~~L~L~~n~l~~~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~~~ 264 (598)
++.++++++.+.. ..+..+ ++++.|++++|.+.+..+.. ... ++|++|++++|.+++. ++..+..+++
T Consensus 49 ~~~l~l~~~~~~~-----~~~~~~~~~~l~~L~l~~n~l~~~~~~~---~~~-~~L~~L~L~~~~l~~~~~~~~~~~~~~ 119 (336)
T 2ast_B 49 WQTLDLTGKNLHP-----DVTGRLLSQGVIAFRCPRSFMDQPLAEH---FSP-FRVQHMDLSNSVIEVSTLHGILSQCSK 119 (336)
T ss_dssp SSEEECTTCBCCH-----HHHHHHHHTTCSEEECTTCEECSCCCSC---CCC-BCCCEEECTTCEECHHHHHHHHTTBCC
T ss_pred heeeccccccCCH-----HHHHhhhhccceEEEcCCccccccchhh---ccC-CCCCEEEccCCCcCHHHHHHHHhhCCC
Confidence 4555555555441 334444 56667777776666655431 122 7778888888777654 6666777777
Q ss_pred cCccEEEccCCccccccchhhcCCCCccEEeeccC-CCCC--cchhhcCCCCCcEEEcccC-cCccc-hhhhhhhcCCCC
Q 040109 265 NLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSN-RLRE--VPKFLGNMSSLKMLVLSYN-ELRGE-LSEFIQNVSSGS 339 (598)
Q Consensus 265 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~--lp~~l~~l~~L~~L~Ls~n-~l~~~-~~~~l~~l~~g~ 339 (598)
|++|++++|.+++..+..+..+++|++|++++| .+++ ++..+..+++|++|++++| .+++. ++..+..++.
T Consensus 120 --L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~-- 195 (336)
T 2ast_B 120 --LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE-- 195 (336)
T ss_dssp --CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT--
T ss_pred --CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhccc--
Confidence 888888888887777777888888888888888 6764 6666777888888888888 77754 4555655541
Q ss_pred CCCCCCCEEEccCcc--ccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCc-CCCcCchhhhc
Q 040109 340 TKNSSLEWLYLASNE--ITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNK-LGGEVPEEIMD 416 (598)
Q Consensus 340 ~~~~~L~~L~Ls~N~--l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~ 416 (598)
+|++|++++|. ++. +..+.....+++|+.|++++|. +++..+..+..
T Consensus 196 ----~L~~L~l~~~~~~~~~--------------------------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 245 (336)
T 2ast_B 196 ----TITQLNLSGYRKNLQK--------------------------SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ 245 (336)
T ss_dssp ----TCCEEECCSCGGGSCH--------------------------HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG
T ss_pred ----CCCEEEeCCCcccCCH--------------------------HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC
Confidence 68888888873 331 1112234456778888888887 66677777888
Q ss_pred ccCCcEEECcCCc-CcccCCcccCCCCCCCeeeCCCCccCCCCcccccCC-CCCCEEeCCCCcceecCCC
Q 040109 417 LVGLVALNLSNNN-LTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRL-RLLSVMDLSYNNFSGKIPK 484 (598)
Q Consensus 417 l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~p~ 484 (598)
+++|++|++++|. ++......+..+++|++|++++| ++.. .+..+ ..|..|++++|++++..|.
T Consensus 246 l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 246 LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred CCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCC
Confidence 8888888888884 33332335777888888888888 4332 23333 2366666788888877665
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=6.4e-22 Score=192.28 Aligned_cols=210 Identities=23% Similarity=0.228 Sum_probs=129.1
Q ss_pred ccEEEccCCccccccchhhcCCCCccEEeeccCCCCCc-chhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCC
Q 040109 267 VDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREV-PKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSL 345 (598)
Q Consensus 267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L 345 (598)
.+.++++++.++ .+|..+. +++++|++++|.++++ +..+.++++|++|++++|.+.+..+..+..++ +|
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------~L 85 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT-------EL 85 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-------TC
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC-------cC
Confidence 344444444444 2333222 3455555555555552 23455555555555555555555555555554 56
Q ss_pred CEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEEC
Q 040109 346 EWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNL 425 (598)
Q Consensus 346 ~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 425 (598)
++|++++|.+++..+. .+..+++|++|+|++|++++..+..|..+++|++|+|
T Consensus 86 ~~L~L~~n~l~~~~~~---------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 138 (251)
T 3m19_A 86 GTLGLANNQLASLPLG---------------------------VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL 138 (251)
T ss_dssp CEEECTTSCCCCCCTT---------------------------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEECCCCcccccChh---------------------------HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEEC
Confidence 6666666665532221 1233556777777777777666666788899999999
Q ss_pred cCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcceecCCCCCccC------ccCCCccCCC
Q 040109 426 SNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKGTQLQ------RFGASTYAGN 499 (598)
Q Consensus 426 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~------~l~~~~~~gn 499 (598)
++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|++.+.......+. ........|+
T Consensus 139 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~ 218 (251)
T 3m19_A 139 NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQ 218 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC----
T ss_pred cCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCc
Confidence 9999997666688899999999999999987777788899999999999999987633321111 1111223344
Q ss_pred CCCCCCCCCCCCCCC
Q 040109 500 PELCGLPLPNKCLDE 514 (598)
Q Consensus 500 p~lC~~~~~~~c~~~ 514 (598)
. .|+.+....|..+
T Consensus 219 ~-~~~~~~~~~C~~~ 232 (251)
T 3m19_A 219 N-LHESPDGVTCSDG 232 (251)
T ss_dssp ----CCGGGCBBTTS
T ss_pred c-cccCCCcCccCCC
Confidence 3 5655656677655
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=3.6e-23 Score=210.32 Aligned_cols=265 Identities=20% Similarity=0.238 Sum_probs=206.4
Q ss_pred CCCCccCeeeCCCCCcEEEEEcCCCCCCCCCCCceecCccccCC--CCCCEEECcCCCCCCCCcchhcCCCCCCCEEECC
Q 040109 68 NCCKWRGVRCSNKTGHVLGLDLRALSDSPVDALKGTINPSLLKL--QHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALS 145 (598)
Q Consensus 68 ~~c~w~gv~C~~~~~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l--~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls 145 (598)
-|..|.++.|+. ..++.+++++ +.+. +..+..+ ++++.|++++|.+.+. .+. +..+++|++|+++
T Consensus 35 vc~~W~~~~~~~--~~~~~l~l~~------~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~-~~~-~~~~~~L~~L~L~ 101 (336)
T 2ast_B 35 VCKRWYRLASDE--SLWQTLDLTG------KNLH---PDVTGRLLSQGVIAFRCPRSFMDQP-LAE-HFSPFRVQHMDLS 101 (336)
T ss_dssp SCHHHHHHHTCS--TTSSEEECTT------CBCC---HHHHHHHHHTTCSEEECTTCEECSC-CCS-CCCCBCCCEEECT
T ss_pred HHHHHHHHhcCc--hhheeecccc------ccCC---HHHHHhhhhccceEEEcCCcccccc-chh-hccCCCCCEEEcc
Confidence 355799988853 3467889987 4444 4556666 8999999999999874 444 5679999999999
Q ss_pred CCCCCCC-CccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCC-cCCCCCchhHhhcCCCCCcEEeccCc-
Q 040109 146 SAQLAGP-IPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDC-KLSKFSNWFQVLSNLRSLTTLYLGHC- 222 (598)
Q Consensus 146 ~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~l~~l~~L~~L~l~~n- 222 (598)
+|.+++. ++..+..+++|++|++++|.+ ....+..+..+++|++|++++| .+++. .++..+..+++|++|++++|
T Consensus 102 ~~~l~~~~~~~~~~~~~~L~~L~L~~~~l-~~~~~~~l~~~~~L~~L~L~~~~~l~~~-~l~~~~~~~~~L~~L~l~~~~ 179 (336)
T 2ast_B 102 NSVIEVSTLHGILSQCSKLQNLSLEGLRL-SDPIVNTLAKNSNLVRLNLSGCSGFSEF-ALQTLLSSCSRLDELNLSWCF 179 (336)
T ss_dssp TCEECHHHHHHHHTTBCCCSEEECTTCBC-CHHHHHHHTTCTTCSEEECTTCBSCCHH-HHHHHHHHCTTCCEEECCCCT
T ss_pred CCCcCHHHHHHHHhhCCCCCEEeCcCccc-CHHHHHHHhcCCCCCEEECCCCCCCCHH-HHHHHHhcCCCCCEEcCCCCC
Confidence 9999865 788899999999999999986 3344556888999999999999 56642 24566888999999999999
Q ss_pred CCCCCCCChhhhccccC-CccEEEccCC--CCC-CCcchhhhhcCccCccEEEccCCc-cccccchhhcCCCCccEEeec
Q 040109 223 DLPPISTPSLLHLNYSK-SLEVIDLSNN--YLT-NSIYPWLLNVSSNLVDHIDLGSNR-LHGSIPVAFGHMASLRYLGLL 297 (598)
Q Consensus 223 ~l~~~~~~~~~~~~~~~-~L~~L~Ls~n--~l~-~~~~~~l~~~~~~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls 297 (598)
.+++... ......++ +|++|++++| .++ +.++..+..+++ |++|++++|. +++..+..+..+++|++|+++
T Consensus 180 ~l~~~~~--~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~--L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~ 255 (336)
T 2ast_B 180 DFTEKHV--QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN--LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS 255 (336)
T ss_dssp TCCHHHH--HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTT--CSEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred CcChHHH--HHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCC--CCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCC
Confidence 8875321 11122237 9999999999 566 456777888888 9999999999 787888889999999999999
Q ss_pred cCC-CCC-cchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCC
Q 040109 298 SNR-LRE-VPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPN 361 (598)
Q Consensus 298 ~n~-l~~-lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~ 361 (598)
+|. +.. ....+..+++|+.|++++| +.......+.. ++..|++++|++++..|.
T Consensus 256 ~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~---------~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 256 RCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKE---------ALPHLQINCSHFTTIARP 311 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHH---------HSTTSEESCCCSCCTTCS
T ss_pred CCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHHh---------hCcceEEecccCccccCC
Confidence 995 332 2235788999999999999 54433333322 577888999999988775
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=4.9e-21 Score=191.81 Aligned_cols=191 Identities=19% Similarity=0.316 Sum_probs=123.8
Q ss_pred CCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEE
Q 040109 239 KSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLV 318 (598)
Q Consensus 239 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 318 (598)
++|++|++++|.++. ++ .+..++. |++|++++|.+++..+ +..+++|++|++++|.+++++ .+..+++|++|+
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~--L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNN--LIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTT--CCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCC--CCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 556666666665553 22 3555555 6666666666664333 666666777777777666654 466666777777
Q ss_pred cccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccce
Q 040109 319 LSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKI 398 (598)
Q Consensus 319 Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 398 (598)
+++|.+++..+ +..++ +|+.|++++|.+++..+ +..+++|+.
T Consensus 114 l~~n~l~~~~~--l~~l~-------~L~~L~l~~n~l~~~~~-----------------------------l~~l~~L~~ 155 (308)
T 1h6u_A 114 LTSTQITDVTP--LAGLS-------NLQVLYLDLNQITNISP-----------------------------LAGLTNLQY 155 (308)
T ss_dssp CTTSCCCCCGG--GTTCT-------TCCEEECCSSCCCCCGG-----------------------------GGGCTTCCE
T ss_pred CCCCCCCCchh--hcCCC-------CCCEEECCCCccCcCcc-----------------------------ccCCCCccE
Confidence 77776665432 55554 67777777776653211 234566777
Q ss_pred EeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcc
Q 040109 399 IDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNF 478 (598)
Q Consensus 399 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 478 (598)
|++++|++++ ++. +..+++|+.|++++|++++. +. +..+++|++|++++|++++..| +..+++|+.|++++|++
T Consensus 156 L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 156 LSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp EECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEE
T ss_pred EEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCee
Confidence 7777777774 333 77778888888888888743 32 6777888888888888875442 77788888888888887
Q ss_pred ee
Q 040109 479 SG 480 (598)
Q Consensus 479 ~~ 480 (598)
++
T Consensus 230 ~~ 231 (308)
T 1h6u_A 230 TN 231 (308)
T ss_dssp EC
T ss_pred ec
Confidence 64
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=4.8e-21 Score=191.86 Aligned_cols=195 Identities=24% Similarity=0.331 Sum_probs=122.2
Q ss_pred ccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCC
Q 040109 108 LLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSS 187 (598)
Q Consensus 108 l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~ 187 (598)
+..+++|++|++++|.++. +| .+..+++|++|++++|.+++.. . +..+++|++|++++|.+.. .+.+..+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~~n~l~~---~~~~~~l~~ 108 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDLA-P-LKNLTKITELELSGNPLKN---VSAIAGLQS 108 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECCSCCCSC---CGGGTTCTT
T ss_pred HHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEccCCcCCC---chhhcCCCC
Confidence 3456778888888888774 44 4777888888888888887443 3 7788888888888887622 245777788
Q ss_pred CCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCc
Q 040109 188 LRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLV 267 (598)
Q Consensus 188 L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L 267 (598)
|++|++++|.+++++ .+..+++|++|++++|.+++..+ +.. +++|+.|++++|.+++..+ +..+++ |
T Consensus 109 L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~--l~~---l~~L~~L~l~~n~l~~~~~--l~~l~~--L 175 (308)
T 1h6u_A 109 IKTLDLTSTQITDVT----PLAGLSNLQVLYLDLNQITNISP--LAG---LTNLQYLSIGNAQVSDLTP--LANLSK--L 175 (308)
T ss_dssp CCEEECTTSCCCCCG----GGTTCTTCCEEECCSSCCCCCGG--GGG---CTTCCEEECCSSCCCCCGG--GTTCTT--C
T ss_pred CCEEECCCCCCCCch----hhcCCCCCCEEECCCCccCcCcc--ccC---CCCccEEEccCCcCCCChh--hcCCCC--C
Confidence 888888888777752 26677777777777777766543 221 2566666666666654222 444555 5
Q ss_pred cEEEccCCccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCcc
Q 040109 268 DHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRG 326 (598)
Q Consensus 268 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~ 326 (598)
+.|++++|.+++..+ +..+++|++|++++|++++++. +..+++|+.|++++|++++
T Consensus 176 ~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 176 TTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEEC
T ss_pred CEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeec
Confidence 555555555553322 4455555555555555555442 4455555555555555443
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=8.9e-22 Score=189.78 Aligned_cols=198 Identities=15% Similarity=0.161 Sum_probs=116.1
Q ss_pred ccEEEccCCccccccchhhcCCCCccEEeeccCC-CCCcch-hhcCCCCCcEEEccc-CcCccchhhhhhhcCCCCCCCC
Q 040109 267 VDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNR-LREVPK-FLGNMSSLKMLVLSY-NELRGELSEFIQNVSSGSTKNS 343 (598)
Q Consensus 267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~lp~-~l~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~g~~~~~ 343 (598)
+++|++++|.+++..+..|.++++|++|++++|+ ++.++. .|.++++|++|++++ |.+++..+..|..++
T Consensus 33 l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~------- 105 (239)
T 2xwt_C 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP------- 105 (239)
T ss_dssp CCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT-------
T ss_pred ccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC-------
Confidence 5566666666655555556666666666666664 555443 556666666666665 666655555555555
Q ss_pred CCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCC-cCCCcCchhhhcccCCc-
Q 040109 344 SLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSN-KLGGEVPEEIMDLVGLV- 421 (598)
Q Consensus 344 ~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~- 421 (598)
+|++|++++|.+++ +|.+.++++ +..|++|++++| ++++..+..|..+++|+
T Consensus 106 ~L~~L~l~~n~l~~-lp~~~~l~~-------------------------L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~ 159 (239)
T 2xwt_C 106 LLKFLGIFNTGLKM-FPDLTKVYS-------------------------TDIFFILEITDNPYMTSIPVNAFQGLCNETL 159 (239)
T ss_dssp TCCEEEEEEECCCS-CCCCTTCCB-------------------------CCSEEEEEEESCTTCCEECTTTTTTTBSSEE
T ss_pred CCCEEeCCCCCCcc-ccccccccc-------------------------cccccEEECCCCcchhhcCcccccchhccee
Confidence 66666666666654 333222221 111336777777 66655555566777777
Q ss_pred EEECcCCcCcccCCcccCCCCCCCeeeCCCCc-cCCCCcccccCC-CCCCEEeCCCCcceecCCCCCccCccCCCccCCC
Q 040109 422 ALNLSNNNLTGQITPRIGQLKSLDFLDLSINH-FFGGIPSSLSRL-RLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGN 499 (598)
Q Consensus 422 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~gn 499 (598)
+|++++|+++ .+|......++|+.|++++|+ +++..+..|..+ ++|+.|++++|+++ .+|.. .+..+..+.+.++
T Consensus 160 ~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~-~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 160 TLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK-GLEHLKELIARNT 236 (239)
T ss_dssp EEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT-TCTTCSEEECTTC
T ss_pred EEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh-HhccCceeeccCc
Confidence 7777777776 444332223667777777774 665555566666 77777777777776 44443 4555655555554
Q ss_pred C
Q 040109 500 P 500 (598)
Q Consensus 500 p 500 (598)
+
T Consensus 237 ~ 237 (239)
T 2xwt_C 237 W 237 (239)
T ss_dssp -
T ss_pred c
Confidence 3
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=5.4e-21 Score=185.68 Aligned_cols=191 Identities=23% Similarity=0.311 Sum_probs=129.6
Q ss_pred CCCCccCeeeCCCCCcEEEEEcCCCCCCCCCCCceecCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCC
Q 040109 68 NCCKWRGVRCSNKTGHVLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSA 147 (598)
Q Consensus 68 ~~c~w~gv~C~~~~~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n 147 (598)
.|+.|.|..|... .+.+++++ +.++ .+|..+. +++++|+|++|.+++. .+..+..+++|++|+|++|
T Consensus 3 ~Cp~~~gC~C~~~---~~~l~~~~------~~l~-~~p~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n 69 (251)
T 3m19_A 3 TCETVTGCTCNEG---KKEVDCQG------KSLD-SVPSGIP--ADTEKLDLQSTGLATL-SDATFRGLTKLTWLNLDYN 69 (251)
T ss_dssp -CHHHHSSEEEGG---GTEEECTT------CCCS-SCCSCCC--TTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTS
T ss_pred cCCCCCceEcCCC---CeEEecCC------CCcc-ccCCCCC--CCCCEEEccCCCcCcc-CHhHhcCcccCCEEECCCC
Confidence 4789999999532 23567776 4554 4665554 5889999999999875 6677888899999999999
Q ss_pred CCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCC
Q 040109 148 QLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPI 227 (598)
Q Consensus 148 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 227 (598)
.+++..+..|..+++|++|++++|.+ ....+..+..+++|++|++++|.++.++. ..+..+++|++|++++|.+++.
T Consensus 70 ~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~ 146 (251)
T 3m19_A 70 QLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPS--GVFDRLTKLKELRLNTNQLQSI 146 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCCC
T ss_pred cCCccCHhHhccCCcCCEEECCCCcc-cccChhHhcccCCCCEEEcCCCcCCCcCh--hHhccCCcccEEECcCCcCCcc
Confidence 99887777888888888888888887 34444557777888888888887776543 4455666666666666666554
Q ss_pred CCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCC
Q 040109 228 STPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLRE 303 (598)
Q Consensus 228 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 303 (598)
++ ..+..+++ |++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 147 ~~---------------------------~~~~~l~~--L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 147 PA---------------------------GAFDKLTN--LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CT---------------------------TTTTTCTT--CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CH---------------------------HHcCcCcC--CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 44 23333444 5555555555554444455555666666666666543
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=1.8e-22 Score=209.36 Aligned_cols=256 Identities=20% Similarity=0.157 Sum_probs=151.9
Q ss_pred CCccccCCCCCCCEEEccCCCCCCCCC---cccccCCCCCCEEEcCCCcCCCCCc-hhHh-------hcCCCCCcEEecc
Q 040109 152 PIPHQLGNLSRLQVLDLRFNNLFSSGN---LDWLSYLSSLRYLDLGDCKLSKFSN-WFQV-------LSNLRSLTTLYLG 220 (598)
Q Consensus 152 ~~p~~l~~l~~L~~L~Ls~n~l~~~~~---~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~-------l~~l~~L~~L~l~ 220 (598)
.++..+..+++|++|++++|.+..... ...+..+++|++|+|++|.+..+.. +|.. +..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 566778889999999999998732211 1237789999999999987664421 2223 3566666666666
Q ss_pred CcCCCCCCCChh-hhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCC---------CC
Q 040109 221 HCDLPPISTPSL-LHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHM---------AS 290 (598)
Q Consensus 221 ~n~l~~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l---------~~ 290 (598)
+|.+.......+ ..+..+++|++|+|++|.++...+..+.. .+..+ ++
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~----------------------~l~~l~~~~~~~~~~~ 160 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR----------------------ALQELAVNKKAKNAPP 160 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH----------------------HHHHHHHHHHHHTCCC
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH----------------------HHHHHhhhhhcccCCC
Confidence 666654321100 01111245555555555544322222221 11122 55
Q ss_pred ccEEeeccCCCCC--cc---hhhcCCCCCcEEEcccCcCcc-----chhhhhhhcCCCCCCCCCCCEEEccCccccccCC
Q 040109 291 LRYLGLLSNRLRE--VP---KFLGNMSSLKMLVLSYNELRG-----ELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIP 360 (598)
Q Consensus 291 L~~L~Ls~n~l~~--lp---~~l~~l~~L~~L~Ls~n~l~~-----~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p 360 (598)
|++|++++|+++. +| ..+..+++|+.|++++|.+.. ..+..+..++ +|+.|+|++|.++..-
T Consensus 161 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~-------~L~~L~Ls~n~l~~~g- 232 (386)
T 2ca6_A 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ-------ELKVLDLQDNTFTHLG- 232 (386)
T ss_dssp CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT-------TCCEEECCSSCCHHHH-
T ss_pred CcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCC-------CccEEECcCCCCCcHH-
Confidence 6666666666552 33 345555666666666666552 1222344444 6666666666654100
Q ss_pred CCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCc----Cchhhhc--ccCCcEEECcCCcCcc--
Q 040109 361 NLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGE----VPEEIMD--LVGLVALNLSNNNLTG-- 432 (598)
Q Consensus 361 ~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~--l~~L~~L~Ls~N~l~~-- 432 (598)
.+..+..+..+++|+.|+|++|.+++. ++..+.. +++|+.|+|++|.+++
T Consensus 233 ----------------------~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g 290 (386)
T 2ca6_A 233 ----------------------SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290 (386)
T ss_dssp ----------------------HHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred ----------------------HHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHH
Confidence 000112234455677777777777654 4566643 8899999999999987
Q ss_pred --cCCccc-CCCCCCCeeeCCCCccCCCCc
Q 040109 433 --QITPRI-GQLKSLDFLDLSINHFFGGIP 459 (598)
Q Consensus 433 --~~p~~l-~~l~~L~~L~Ls~N~l~~~~p 459 (598)
.+|..+ .++++|++|++++|++++..+
T Consensus 291 ~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 291 VRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 477777 668999999999999987764
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.4e-21 Score=188.32 Aligned_cols=196 Identities=22% Similarity=0.259 Sum_probs=144.8
Q ss_pred CCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCC-CCCCCccccCCCCCCCEEEccC-CCCCCCCCcccccCCCCCCE
Q 040109 113 HLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQ-LAGPIPHQLGNLSRLQVLDLRF-NNLFSSGNLDWLSYLSSLRY 190 (598)
Q Consensus 113 ~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~~~~~l~~l~~L~~ 190 (598)
+|++|++++|.+++. .+..|..+++|++|++++|. ++...+..|.++++|++|++++ |.+ .......|.++++|++
T Consensus 32 ~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l-~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL-TYIDPDALKELPLLKF 109 (239)
T ss_dssp TCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC-CEECTTSEECCTTCCE
T ss_pred cccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe-eEcCHHHhCCCCCCCE
Confidence 899999999999864 45578899999999999997 8866667899999999999998 887 4444556888999999
Q ss_pred EEcCCCcCCCCCchhHhhcCCCCCc---EEeccCc-CCCCCCCChhhhccccCCcc-EEEccCCCCCCCcchhhhhcCcc
Q 040109 191 LDLGDCKLSKFSNWFQVLSNLRSLT---TLYLGHC-DLPPISTPSLLHLNYSKSLE-VIDLSNNYLTNSIYPWLLNVSSN 265 (598)
Q Consensus 191 L~L~~n~l~~~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~l~~~~~~ 265 (598)
|++++|.++++|. +..+++|+ +|++++| .+++.++..+... ++|+ .|++++|.++ .+|......++
T Consensus 110 L~l~~n~l~~lp~----~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l---~~L~~~L~l~~n~l~-~i~~~~~~~~~- 180 (239)
T 2xwt_C 110 LGIFNTGLKMFPD----LTKVYSTDIFFILEITDNPYMTSIPVNAFQGL---CNETLTLKLYNNGFT-SVQGYAFNGTK- 180 (239)
T ss_dssp EEEEEECCCSCCC----CTTCCBCCSEEEEEEESCTTCCEECTTTTTTT---BSSEEEEECCSCCCC-EECTTTTTTCE-
T ss_pred EeCCCCCCccccc----cccccccccccEEECCCCcchhhcCcccccch---hcceeEEEcCCCCCc-ccCHhhcCCCC-
Confidence 9999999888653 66666666 8888888 7777665444433 6777 7888777777 44444333355
Q ss_pred CccEEEccCCc-cccccchhhcCC-CCccEEeeccCCCCCcchhhcCCCCCcEEEcccC
Q 040109 266 LVDHIDLGSNR-LHGSIPVAFGHM-ASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYN 322 (598)
Q Consensus 266 ~L~~L~L~~n~-l~~~~p~~l~~l-~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n 322 (598)
|++|++++|+ +++..+..|..+ ++|++|++++|+++++|.. .+++|+.|+++++
T Consensus 181 -L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 181 -LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp -EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred -CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 7777777774 665555666666 7777777777777766644 4566666666654
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=3.5e-20 Score=199.34 Aligned_cols=211 Identities=19% Similarity=0.294 Sum_probs=143.2
Q ss_pred CCCCCCCCCCCCCC-----CccCe-eeCCCCCcEEEEEcCCCCCCCCCCCceecCccccCCCCCCEEECcCCCCCCCCcc
Q 040109 57 LSSWGREDEKRNCC-----KWRGV-RCSNKTGHVLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIP 130 (598)
Q Consensus 57 l~~W~~~~~~~~~c-----~w~gv-~C~~~~~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p 130 (598)
+.+|.. +.++| .|.|+ .|. .++++.+++++ +.+++ +|..+. ++|++|+|++|.++. +|
T Consensus 33 l~~W~~---~~~~~~~~~~~~~~l~~C~--~~~L~~L~Ls~------n~L~~-lp~~l~--~~L~~L~Ls~N~l~~--ip 96 (571)
T 3cvr_A 33 WDKWEK---QALPGENRNEAVSLLKECL--INQFSELQLNR------LNLSS-LPDNLP--PQITVLEITQNALIS--LP 96 (571)
T ss_dssp HHHHHT---TCCTTCCHHHHHHHHHHHH--HTTCSEEECCS------SCCSC-CCSCCC--TTCSEEECCSSCCSC--CC
T ss_pred HHHHhc---cCCccccccchhhhccccc--cCCccEEEeCC------CCCCc-cCHhHc--CCCCEEECcCCCCcc--cc
Confidence 345652 44556 69999 674 24688888888 67766 777663 788888888888883 66
Q ss_pred hhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcC
Q 040109 131 EFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSN 210 (598)
Q Consensus 131 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~ 210 (598)
..+++|++|++++|.+++ +|. +.+ +|++|++++|.+.. .+. .+++|++|++++|.++++|. .
T Consensus 97 ---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l~~lp~------~ 158 (571)
T 3cvr_A 97 ---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM--LPE---LPALLEYINADNNQLTMLPE------L 158 (571)
T ss_dssp ---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSCCCC------C
T ss_pred ---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC--CCC---cCccccEEeCCCCccCcCCC------c
Confidence 457888888888888885 666 554 78888888887632 222 56677777777777666432 3
Q ss_pred CCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcC---
Q 040109 211 LRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGH--- 287 (598)
Q Consensus 211 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~--- 287 (598)
+++|++|++++|.+++.+. +. ++ |+.|++++|.++ .+|. +..
T Consensus 159 l~~L~~L~Ls~N~L~~lp~--l~-----~~--------------------------L~~L~Ls~N~L~-~lp~-~~~~L~ 203 (571)
T 3cvr_A 159 PTSLEVLSVRNNQLTFLPE--LP-----ES--------------------------LEALDVSTNLLE-SLPA-VPVRNH 203 (571)
T ss_dssp CTTCCEEECCSSCCSCCCC--CC-----TT--------------------------CCEEECCSSCCS-SCCC-CC----
T ss_pred CCCcCEEECCCCCCCCcch--hh-----CC--------------------------CCEEECcCCCCC-chhh-HHHhhh
Confidence 4555555555555555322 11 34 555555555555 3343 332
Q ss_pred --CCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcC
Q 040109 288 --MASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVS 336 (598)
Q Consensus 288 --l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 336 (598)
.+.|++|++++|+++.+|..+..+++|+.|+|++|++++..|..+..+.
T Consensus 204 ~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 204 HSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp ----CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred cccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 1223899999999999998888899999999999999999998887764
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=6.1e-20 Score=187.42 Aligned_cols=230 Identities=18% Similarity=0.195 Sum_probs=164.4
Q ss_pred ecCccccCCCCCCEEECcCCCCCCCCcc-hhcCCCCCCCEEECCCCCCCCCCc-cccCCCCCCCE-EEccCCCCCCCCCc
Q 040109 103 TINPSLLKLQHLTYLDLSWNNFSGSPIP-EFIGSLSKLSELALSSAQLAGPIP-HQLGNLSRLQV-LDLRFNNLFSSGNL 179 (598)
Q Consensus 103 ~l~~~l~~l~~L~~L~Ls~n~l~~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~-L~Ls~n~l~~~~~~ 179 (598)
.+|..+ .+++++|+|++|.|+. +| ..|.++++|++|+|++|.+.+.+| ..|.++++|++ +.+++|++ ....+
T Consensus 23 ~iP~~l--~~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l-~~l~~ 97 (350)
T 4ay9_X 23 EIPSDL--PRNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL-LYINP 97 (350)
T ss_dssp SCCTTC--CTTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC-CEECT
T ss_pred ccCcCc--CCCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc-cccCc
Confidence 456555 3689999999999985 55 468999999999999999876555 56888988876 55666776 44556
Q ss_pred ccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccC-cCCCCCCCChhhhccccCCccEEEccCCCCCCCcchh
Q 040109 180 DWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGH-CDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPW 258 (598)
Q Consensus 180 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 258 (598)
..|.++++|++|++++|++..++. ..+....++..+++.+ +.+.......+... ...++.|++++|+++ .+++.
T Consensus 98 ~~f~~l~~L~~L~l~~n~l~~~~~--~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~--~~~l~~L~L~~N~i~-~i~~~ 172 (350)
T 4ay9_X 98 EAFQNLPNLQYLLISNTGIKHLPD--VHKIHSLQKVLLDIQDNINIHTIERNSFVGL--SFESVILWLNKNGIQ-EIHNS 172 (350)
T ss_dssp TSBCCCTTCCEEEEEEECCSSCCC--CTTCCBSSCEEEEEESCTTCCEECTTSSTTS--BSSCEEEECCSSCCC-EECTT
T ss_pred hhhhhccccccccccccccccCCc--hhhcccchhhhhhhccccccccccccchhhc--chhhhhhcccccccc-CCChh
Confidence 678999999999999999988754 4556667788888865 56666555434332 256888899998887 45555
Q ss_pred hhhcCccCccEEEccC-CccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcCC
Q 040109 259 LLNVSSNLVDHIDLGS-NRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSS 337 (598)
Q Consensus 259 l~~~~~~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 337 (598)
.....+ ++.|++.+ |.++...++.|..+++|++|++++|+++.+|.. .+.+|+.|.+.++.--..+|. +..++
T Consensus 173 ~f~~~~--L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~- 246 (350)
T 4ay9_X 173 AFNGTQ--LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPT-LEKLV- 246 (350)
T ss_dssp SSTTEE--EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCC-TTTCC-
T ss_pred hccccc--hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCC-chhCc-
Confidence 545555 88888875 556544445678888888888888888888753 355666776665544344442 45555
Q ss_pred CCCCCCCCCEEEccCcc
Q 040109 338 GSTKNSSLEWLYLASNE 354 (598)
Q Consensus 338 g~~~~~~L~~L~Ls~N~ 354 (598)
+|+.++++++.
T Consensus 247 ------~L~~l~l~~~~ 257 (350)
T 4ay9_X 247 ------ALMEASLTYPS 257 (350)
T ss_dssp ------SCCEEECSCHH
T ss_pred ------ChhhCcCCCCc
Confidence 78888887654
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=9.2e-20 Score=196.05 Aligned_cols=95 Identities=23% Similarity=0.316 Sum_probs=47.9
Q ss_pred CCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCcc
Q 040109 213 SLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLR 292 (598)
Q Consensus 213 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 292 (598)
+|+.|++++|.+++++... . ++|+.|++++|.++ .+| ..+++ |++|++++|.+++ +|. +.. +|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l---~---~~L~~L~Ls~N~l~-~ip---~~l~~--L~~L~Ls~N~l~~-ip~-l~~--~L~ 123 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL---P---PQITVLEITQNALI-SLP---ELPAS--LEYLDACDNRLST-LPE-LPA--SLK 123 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC---C---TTCSEEECCSSCCS-CCC---CCCTT--CCEEECCSSCCSC-CCC-CCT--TCC
T ss_pred CccEEEeCCCCCCccCHhH---c---CCCCEEECcCCCCc-ccc---cccCC--CCEEEccCCCCCC-cch-hhc--CCC
Confidence 5666666666665533211 1 45555555555555 333 22333 5555555555554 443 332 555
Q ss_pred EEeeccCCCCCcchhhcCCCCCcEEEcccCcCcc
Q 040109 293 YLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRG 326 (598)
Q Consensus 293 ~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~ 326 (598)
+|++++|+++++|. .+++|+.|++++|.+++
T Consensus 124 ~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~ 154 (571)
T 3cvr_A 124 HLDVDNNQLTMLPE---LPALLEYINADNNQLTM 154 (571)
T ss_dssp EEECCSSCCSCCCC---CCTTCCEEECCSSCCSC
T ss_pred EEECCCCcCCCCCC---cCccccEEeCCCCccCc
Confidence 55555555555544 34555555555555544
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=1.5e-19 Score=184.45 Aligned_cols=227 Identities=16% Similarity=0.128 Sum_probs=174.4
Q ss_pred CEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCCE-EEc
Q 040109 115 TYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRY-LDL 193 (598)
Q Consensus 115 ~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~-L~L 193 (598)
++++.++++++ .+|..+ .+++++|+|++|+|+...+..|.++++|++|+|++|++....+...|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt--~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT--EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC--SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC--ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56788888898 478776 3789999999999996656789999999999999999755455567899999876 566
Q ss_pred CCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccC-CCCCCCcchhhhhcCccCccEEEc
Q 040109 194 GDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSN-NYLTNSIYPWLLNVSSNLVDHIDL 272 (598)
Q Consensus 194 ~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~~~~~L~~L~L 272 (598)
++|+++.++. ..|..+++|++|++++|++...++..+ ... .++..|++.+ +.+....+..+..... .++.|++
T Consensus 88 ~~N~l~~l~~--~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~-~~l~~l~l~~~~~i~~l~~~~f~~~~~-~l~~L~L 161 (350)
T 4ay9_X 88 KANNLLYINP--EAFQNLPNLQYLLISNTGIKHLPDVHK--IHS-LQKVLLDIQDNINIHTIERNSFVGLSF-ESVILWL 161 (350)
T ss_dssp EETTCCEECT--TSBCCCTTCCEEEEEEECCSSCCCCTT--CCB-SSCEEEEEESCTTCCEECTTSSTTSBS-SCEEEEC
T ss_pred cCCcccccCc--hhhhhccccccccccccccccCCchhh--ccc-chhhhhhhccccccccccccchhhcch-hhhhhcc
Confidence 7789998743 789999999999999999998877433 333 6788899876 4555433344555432 1889999
Q ss_pred cCCccccccchhhcCCCCccEEeecc-CCCCCcch-hhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEc
Q 040109 273 GSNRLHGSIPVAFGHMASLRYLGLLS-NRLREVPK-FLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYL 350 (598)
Q Consensus 273 ~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~L 350 (598)
++|+++. +|.......+|++|++++ |.++.+|. .|.++++|++|++++|+++..++..+. +|+.|.+
T Consensus 162 ~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~----------~L~~L~~ 230 (350)
T 4ay9_X 162 NKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE----------NLKKLRA 230 (350)
T ss_dssp CSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT----------TCCEEEC
T ss_pred ccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc----------cchHhhh
Confidence 9999985 454444667899999975 77888885 678999999999999999977665443 6778887
Q ss_pred cCccccccCCCC
Q 040109 351 ASNEITGTIPNL 362 (598)
Q Consensus 351 s~N~l~~~~p~l 362 (598)
.++.-...+|.+
T Consensus 231 l~~~~l~~lP~l 242 (350)
T 4ay9_X 231 RSTYNLKKLPTL 242 (350)
T ss_dssp TTCTTCCCCCCT
T ss_pred ccCCCcCcCCCc
Confidence 766544455544
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.8e-19 Score=169.61 Aligned_cols=184 Identities=23% Similarity=0.288 Sum_probs=131.2
Q ss_pred CCCccCeeeCCCCCcEEEEEcCCCCCCCCCCCceecCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCC
Q 040109 69 CCKWRGVRCSNKTGHVLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQ 148 (598)
Q Consensus 69 ~c~w~gv~C~~~~~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~ 148 (598)
.|.|.++.|+.. .++ .+|..+ .++|++|++++|.+++. .+..+..+++|++|++++|.
T Consensus 6 ~C~~~~v~c~~~------------------~l~-~~p~~~--~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~ 63 (208)
T 2o6s_A 6 SCSGTTVECYSQ------------------GRT-SVPTGI--PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNK 63 (208)
T ss_dssp EEETTEEECCSS------------------CCS-SCCSCC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSC
T ss_pred EECCCEEEecCC------------------Ccc-CCCCCC--CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCc
Confidence 378999999642 111 233333 45899999999999864 55668899999999999999
Q ss_pred CCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCC
Q 040109 149 LAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPIS 228 (598)
Q Consensus 149 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 228 (598)
+++..+..|..+++|++|++++|.+ .......+.++++|++|++++|.+++++. ..+..+++|++|++++|.+++.+
T Consensus 64 l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~N~l~~~~ 140 (208)
T 2o6s_A 64 LQSLPNGVFNKLTSLTYLNLSTNQL-QSLPNGVFDKLTQLKELALNTNQLQSLPD--GVFDKLTQLKDLRLYQNQLKSVP 140 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCCC
T ss_pred cCccChhhcCCCCCcCEEECCCCcC-CccCHhHhcCccCCCEEEcCCCcCcccCH--hHhccCCcCCEEECCCCccceeC
Confidence 9977667788999999999999987 34444557888899999999998887643 45777888888888888877665
Q ss_pred CChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCC
Q 040109 229 TPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMA 289 (598)
Q Consensus 229 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~ 289 (598)
+..+... ++|+.|++++|.+.+.. +. ++.|+++.|.++|.+|..++.++
T Consensus 141 ~~~~~~l---~~L~~L~l~~N~~~~~~-------~~--l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 141 DGVFDRL---TSLQYIWLHDNPWDCTC-------PG--IRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp TTTTTTC---TTCCEEECCSCCBCCCT-------TT--THHHHHHHHHCTTTBBCTTSSBC
T ss_pred HHHhccC---CCccEEEecCCCeecCC-------CC--HHHHHHHHHhCCceeeccCcccc
Confidence 5333322 66777777777655432 23 56666666666666665555443
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=6.4e-20 Score=174.14 Aligned_cols=158 Identities=21% Similarity=0.187 Sum_probs=123.1
Q ss_pred cEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchh-hhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCcc
Q 040109 292 RYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELS-EFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLM 370 (598)
Q Consensus 292 ~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~ 370 (598)
+.+++++|.++.+|..+. +.+++|++++|.+++..+ ..+..++ +|+.|++++|.+++..+.
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~-------~L~~L~L~~N~i~~i~~~--------- 75 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLP-------QLRKINFSNNKITDIEEG--------- 75 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCT-------TCCEEECCSSCCCEECTT---------
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCC-------CCCEEECCCCcCCEECHH---------
Confidence 466666676666665442 345677777777766643 3455555 677777777777654331
Q ss_pred ccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCC
Q 040109 371 PLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLS 450 (598)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 450 (598)
.+..+++|++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|++|+|+
T Consensus 76 ------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 137 (220)
T 2v70_A 76 ------------------AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY 137 (220)
T ss_dssp ------------------TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECT
T ss_pred ------------------HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECC
Confidence 23446678888888888887778889999999999999999998889999999999999999
Q ss_pred CCccCCCCcccccCCCCCCEEeCCCCcceecCCCC
Q 040109 451 INHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPKG 485 (598)
Q Consensus 451 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 485 (598)
+|++++..|..|..+++|++|++++|++.+.++..
T Consensus 138 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~ 172 (220)
T 2v70_A 138 DNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLA 172 (220)
T ss_dssp TSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGH
T ss_pred CCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchH
Confidence 99999888999999999999999999999876643
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=1.5e-19 Score=171.51 Aligned_cols=156 Identities=21% Similarity=0.204 Sum_probs=118.2
Q ss_pred cEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccc
Q 040109 292 RYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMP 371 (598)
Q Consensus 292 ~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~ 371 (598)
+.++++++.++.+|..+. ++|+.|++++|.+.+..+..+..++ +|+.|+|++|++++..|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~-------~L~~L~Ls~N~i~~~~~~---------- 74 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYK-------KLRRIDLSNNQISELAPD---------- 74 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCT-------TCCEEECCSSCCCEECTT----------
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCC-------CCCEEECCCCcCCCcCHH----------
Confidence 456677777777665443 5677777777777766666666665 677777777777654332
Q ss_pred cccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCC
Q 040109 372 LIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSI 451 (598)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 451 (598)
.+..+++|++|+|++|+|+...+..|..+++|++|+|++|++++..|..|..+++|++|+|++
T Consensus 75 -----------------~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 137 (220)
T 2v9t_B 75 -----------------AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD 137 (220)
T ss_dssp -----------------TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred -----------------HhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC
Confidence 234456778888888888855556678889999999999999988888899999999999999
Q ss_pred CccCCCCcccccCCCCCCEEeCCCCcceecCC
Q 040109 452 NHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIP 483 (598)
Q Consensus 452 N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 483 (598)
|++++..+..|..+++|++|++++|++.+..+
T Consensus 138 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 138 NKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 99988777788889999999999999886544
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=2.5e-19 Score=183.67 Aligned_cols=176 Identities=24% Similarity=0.225 Sum_probs=88.4
Q ss_pred cEEEccCCccccccchhhcCCCCccEEeeccCCCCCcch-hhc-CCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCC
Q 040109 268 DHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPK-FLG-NMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSL 345 (598)
Q Consensus 268 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L 345 (598)
+.++++++.++ .+|..+. +.++.|+|++|++++++. .+. .+++|+.|+|++|++++..+..|..++ +|
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-------~L 90 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-------NL 90 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT-------TC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC-------CC
Confidence 45566666655 2443332 345666666666665433 333 556666666666666655555555554 55
Q ss_pred CEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEEC
Q 040109 346 EWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNL 425 (598)
Q Consensus 346 ~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 425 (598)
+.|+|++|++++..+. .+..+++|+.|+|++|+|++..|..|..+++|+.|+|
T Consensus 91 ~~L~Ls~N~l~~~~~~---------------------------~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 143 (361)
T 2xot_A 91 RYLDLSSNHLHTLDEF---------------------------LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL 143 (361)
T ss_dssp CEEECCSSCCCEECTT---------------------------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEECCCCcCCcCCHH---------------------------HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEEC
Confidence 5555555555532221 1223444555555555555444555555555555555
Q ss_pred cCCcCcccCCccc---CCCCCCCeeeCCCCccCCCCcccccCCCC--CCEEeCCCCccee
Q 040109 426 SNNNLTGQITPRI---GQLKSLDFLDLSINHFFGGIPSSLSRLRL--LSVMDLSYNNFSG 480 (598)
Q Consensus 426 s~N~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~ls~N~l~~ 480 (598)
++|++++..+..| ..+++|+.|||++|++++..+..+..++. |+.|++++|++.+
T Consensus 144 ~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 144 SQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 5555553222222 34555555555555555433344444444 2445555555543
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=1.4e-18 Score=163.48 Aligned_cols=69 Identities=23% Similarity=0.398 Sum_probs=29.3
Q ss_pred ccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcch-hhcCCCCCcEEEcccCcCccchhhhhhhc
Q 040109 267 VDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPK-FLGNMSSLKMLVLSYNELRGELSEFIQNV 335 (598)
Q Consensus 267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l 335 (598)
|++|++++|.+++..+..+..+++|++|++++|+++++|. .+..+++|++|++++|.+++..+..+..+
T Consensus 78 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 147 (208)
T 2o6s_A 78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 147 (208)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred cCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccC
Confidence 4444444444443333334444444444444444444332 23444444444444444444333333333
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=8.7e-19 Score=166.32 Aligned_cols=159 Identities=21% Similarity=0.163 Sum_probs=137.3
Q ss_pred CcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccc
Q 040109 314 LKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSIL 393 (598)
Q Consensus 314 L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l 393 (598)
-+.+++++|.++.. |..+.. .++.|++++|.+++..|. ..+..+
T Consensus 13 ~~~l~~s~n~l~~i-P~~~~~---------~~~~L~L~~N~l~~~~~~--------------------------~~~~~l 56 (220)
T 2v70_A 13 GTTVDCSNQKLNKI-PEHIPQ---------YTAELRLNNNEFTVLEAT--------------------------GIFKKL 56 (220)
T ss_dssp TTEEECCSSCCSSC-CSCCCT---------TCSEEECCSSCCCEECCC--------------------------CCGGGC
T ss_pred CCEeEeCCCCcccC-ccCCCC---------CCCEEEcCCCcCCccCch--------------------------hhhccC
Confidence 36899999999864 443322 689999999999865432 234568
Q ss_pred cccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeC
Q 040109 394 GLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDL 473 (598)
Q Consensus 394 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 473 (598)
++|+.|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|++|++
T Consensus 57 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 136 (220)
T 2v70_A 57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL 136 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEEC
T ss_pred CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEEC
Confidence 89999999999999888889999999999999999999888888999999999999999999998999999999999999
Q ss_pred CCCcceecCCCC-CccCccCCCccCCCCCCCCCCCC
Q 040109 474 SYNNFSGKIPKG-TQLQRFGASTYAGNPELCGLPLP 508 (598)
Q Consensus 474 s~N~l~~~~p~~-~~~~~l~~~~~~gnp~lC~~~~~ 508 (598)
++|++++..|.. ..++++..+.+.+||+.|+|++.
T Consensus 137 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~ 172 (220)
T 2v70_A 137 YDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLA 172 (220)
T ss_dssp TTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGH
T ss_pred CCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchH
Confidence 999999877765 46788899999999999998753
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=3e-18 Score=169.99 Aligned_cols=167 Identities=23% Similarity=0.308 Sum_probs=109.1
Q ss_pred ccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCC
Q 040109 267 VDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLE 346 (598)
Q Consensus 267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~ 346 (598)
++.|++++|.+... + .+..+++|++|++++|++++++. +..+++|+.|++++|.+.+. + .+..++ +|+
T Consensus 48 L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~-~-~l~~l~-------~L~ 115 (291)
T 1h6t_A 48 IDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDL-S-SLKDLK-------KLK 115 (291)
T ss_dssp CCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCG-G-GGTTCT-------TCC
T ss_pred ccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCC-h-hhccCC-------CCC
Confidence 55555555555432 2 25555666666666666666544 55666666666666666542 2 244444 666
Q ss_pred EEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECc
Q 040109 347 WLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLS 426 (598)
Q Consensus 347 ~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 426 (598)
.|++++|.+++. + .+..+++|+.|++++|++++. ..+..+++|+.|+++
T Consensus 116 ~L~L~~n~i~~~-~----------------------------~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 164 (291)
T 1h6t_A 116 SLSLEHNGISDI-N----------------------------GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLE 164 (291)
T ss_dssp EEECTTSCCCCC-G----------------------------GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred EEECCCCcCCCC-h----------------------------hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEcc
Confidence 666666666531 1 123456677777777777743 567788888888888
Q ss_pred CCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCccee
Q 040109 427 NNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFSG 480 (598)
Q Consensus 427 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 480 (598)
+|++++..| +..+++|++|++++|++++ +| .+..+++|+.|++++|+++.
T Consensus 165 ~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 165 DNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp SSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 888885444 7888888888888888875 44 47888888888888888863
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=7.2e-19 Score=174.44 Aligned_cols=170 Identities=26% Similarity=0.385 Sum_probs=129.9
Q ss_pred CCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEE
Q 040109 239 KSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLV 318 (598)
Q Consensus 239 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 318 (598)
++|+.|++++|.++.. +.+..+++ |+.|++++|.+++..+ +..+++|++|++++|.++++|. +..+++|++|+
T Consensus 46 ~~L~~L~l~~~~i~~~--~~~~~l~~--L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV--QGIQYLPN--VTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HTCCEEECTTSCCCCC--TTGGGCTT--CCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred CcccEEEccCCCcccC--hhHhcCCC--CCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence 6677777777777643 23666666 7788888887775444 7788888888888888887664 77888888888
Q ss_pred cccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccce
Q 040109 319 LSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKI 398 (598)
Q Consensus 319 Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 398 (598)
+++|.+.+. ..+..++ +|+.|++++|.+++. ..+..+++|+.
T Consensus 119 L~~n~i~~~--~~l~~l~-------~L~~L~l~~n~l~~~-----------------------------~~l~~l~~L~~ 160 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLP-------QLESLYLGNNKITDI-----------------------------TVLSRLTKLDT 160 (291)
T ss_dssp CTTSCCCCC--GGGGGCT-------TCCEEECCSSCCCCC-----------------------------GGGGGCTTCSE
T ss_pred CCCCcCCCC--hhhcCCC-------CCCEEEccCCcCCcc-----------------------------hhhccCCCCCE
Confidence 888888764 3466666 788888888887742 12345778899
Q ss_pred EeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCC
Q 040109 399 IDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGG 457 (598)
Q Consensus 399 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 457 (598)
|++++|++++..+ +..+++|+.|++++|++++ ++ .+..+++|+.|++++|+++..
T Consensus 161 L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 161 LSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred EEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence 9999999986544 8899999999999999985 44 488999999999999998753
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=2.4e-18 Score=164.37 Aligned_cols=156 Identities=23% Similarity=0.216 Sum_probs=124.3
Q ss_pred ccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCcc
Q 040109 291 LRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLM 370 (598)
Q Consensus 291 L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~ 370 (598)
.+.++.+++.++.+|..+. ++|++|++++|.+++..|..+..++ +|+.|+|++|.++...+
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~-------~L~~L~L~~N~l~~i~~---------- 81 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLI-------NLKELYLGSNQLGALPV---------- 81 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT-------TCCEEECCSSCCCCCCT----------
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCcc-------CCcEEECCCCCCCCcCh----------
Confidence 4567777777777776443 6788888888888877777777766 78888888887753322
Q ss_pred ccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCC
Q 040109 371 PLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLS 450 (598)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 450 (598)
..+..+++|+.|+|++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|++|+|+
T Consensus 82 -----------------~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~ 143 (229)
T 3e6j_A 82 -----------------GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALD 143 (229)
T ss_dssp -----------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECC
T ss_pred -----------------hhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECC
Confidence 12344667888888888888776777889999999999999998 788889999999999999
Q ss_pred CCccCCCCcccccCCCCCCEEeCCCCcceecCC
Q 040109 451 INHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIP 483 (598)
Q Consensus 451 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 483 (598)
+|++++..+..+..+++|+.|++++|++.+.++
T Consensus 144 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 144 QNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 999987777788999999999999999987765
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=8.8e-19 Score=166.26 Aligned_cols=157 Identities=22% Similarity=0.207 Sum_probs=133.4
Q ss_pred cEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCccccccccc
Q 040109 315 KMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILG 394 (598)
Q Consensus 315 ~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 394 (598)
+.++++++.++..+. .+. ++|+.|++++|.+++..+. .+..++
T Consensus 14 ~~v~c~~~~l~~iP~-~l~---------~~l~~L~l~~n~i~~i~~~---------------------------~~~~l~ 56 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPT-NLP---------ETITEIRLEQNTIKVIPPG---------------------------AFSPYK 56 (220)
T ss_dssp TEEECTTSCCSSCCS-SCC---------TTCCEEECCSSCCCEECTT---------------------------SSTTCT
T ss_pred CEEEcCCCCcCcCCC-ccC---------cCCCEEECCCCcCCCcCHh---------------------------HhhCCC
Confidence 678999998876533 232 2899999999999864431 234577
Q ss_pred ccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCC
Q 040109 395 LIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLS 474 (598)
Q Consensus 395 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 474 (598)
+|+.|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|++|+++
T Consensus 57 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 136 (220)
T 2v9t_B 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY 136 (220)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECC
Confidence 89999999999998889999999999999999999996666678999999999999999999989999999999999999
Q ss_pred CCcceecCCCC-CccCccCCCccCCCCCCCCCCCC
Q 040109 475 YNNFSGKIPKG-TQLQRFGASTYAGNPELCGLPLP 508 (598)
Q Consensus 475 ~N~l~~~~p~~-~~~~~l~~~~~~gnp~lC~~~~~ 508 (598)
+|++++..+.. ..++++..+.+.+||+.|+|++.
T Consensus 137 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~ 171 (220)
T 2v9t_B 137 DNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLK 171 (220)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred CCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccH
Confidence 99999665542 45788889999999999998753
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=1.1e-17 Score=159.86 Aligned_cols=161 Identities=26% Similarity=0.255 Sum_probs=129.4
Q ss_pred CCCCCCccCeeeCCCCCcEEEEEcCCCCCCCCCCCceecCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECC
Q 040109 66 KRNCCKWRGVRCSNKTGHVLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALS 145 (598)
Q Consensus 66 ~~~~c~w~gv~C~~~~~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls 145 (598)
+...|.|.+|.|... .+ +.+|..+. ++|++|+|++|.+++. .|..|..+++|++|+|+
T Consensus 15 ~~~~Cs~~~v~c~~~------------------~l-~~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~ 72 (229)
T 3e6j_A 15 SQCSCSGTTVDCRSK------------------RH-ASVPAGIP--TNAQILYLHDNQITKL-EPGVFDSLINLKELYLG 72 (229)
T ss_dssp TTCEEETTEEECTTS------------------CC-SSCCSCCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECC
T ss_pred CCCEEeCCEeEccCC------------------Cc-CccCCCCC--CCCCEEEcCCCccCcc-CHHHhhCccCCcEEECC
Confidence 667899999999641 12 23454443 7899999999999985 78889999999999999
Q ss_pred CCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCC
Q 040109 146 SAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLP 225 (598)
Q Consensus 146 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~ 225 (598)
+|.++...+..|..+++|++|+|++|++ .......+..+++|++|++++|+++.+| ..+..+++|++|++++|+++
T Consensus 73 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~~l~~L~~L~Ls~N~l~~lp---~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 73 SNQLGALPVGVFDSLTQLTVLDLGTNQL-TVLPSAVFDRLVHLKELFMCCNKLTELP---RGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCSCC---TTGGGCTTCSEEECCSSCCC
T ss_pred CCCCCCcChhhcccCCCcCEEECCCCcC-CccChhHhCcchhhCeEeccCCcccccC---cccccCCCCCEEECCCCcCC
Confidence 9999876667789999999999999998 4445556889999999999999999754 56788899999999999988
Q ss_pred CCCCChhhhccccCCccEEEccCCCCCCCc
Q 040109 226 PISTPSLLHLNYSKSLEVIDLSNNYLTNSI 255 (598)
Q Consensus 226 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 255 (598)
+.++..+..+ ++|+.|++++|.+....
T Consensus 149 ~~~~~~~~~l---~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 149 SIPHGAFDRL---SSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCCTTTTTTC---TTCCEEECTTSCBCTTB
T ss_pred ccCHHHHhCC---CCCCEEEeeCCCccCCc
Confidence 8776444333 78888888888877543
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=3.6e-18 Score=174.99 Aligned_cols=175 Identities=24% Similarity=0.186 Sum_probs=100.0
Q ss_pred cEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhc-CCCCccEEeeccCCCCCcc-hhhcCCCCCcEEEc
Q 040109 242 EVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFG-HMASLRYLGLLSNRLREVP-KFLGNMSSLKMLVL 319 (598)
Q Consensus 242 ~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L 319 (598)
+.++++++.++. +|..+.. . ++.|++++|.+++..+..+. .+++|++|+|++|++++++ ..|.++++|++|+|
T Consensus 21 ~~l~c~~~~l~~-iP~~~~~--~--l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLPS--Y--TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCSS-CCSSCCT--T--CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcCc-cCccCCC--C--CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 456666666653 4433321 2 56666666666655555555 6666666666666666644 34666666666666
Q ss_pred ccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceE
Q 040109 320 SYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKII 399 (598)
Q Consensus 320 s~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 399 (598)
++|++.+..+..|..++ +|+.|+|++|++++..|. .+..+++|+.|
T Consensus 96 s~N~l~~~~~~~~~~l~-------~L~~L~L~~N~i~~~~~~---------------------------~~~~l~~L~~L 141 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQ-------ALEVLLLYNNHIVVVDRN---------------------------AFEDMAQLQKL 141 (361)
T ss_dssp CSSCCCEECTTTTTTCT-------TCCEEECCSSCCCEECTT---------------------------TTTTCTTCCEE
T ss_pred CCCcCCcCCHHHhCCCc-------CCCEEECCCCcccEECHH---------------------------HhCCcccCCEE
Confidence 66666666555555555 666666666666543221 22335556666
Q ss_pred eccCCcCCCcCchhh---hcccCCcEEECcCCcCcccCCcccCCCCC--CCeeeCCCCccC
Q 040109 400 DLSSNKLGGEVPEEI---MDLVGLVALNLSNNNLTGQITPRIGQLKS--LDFLDLSINHFF 455 (598)
Q Consensus 400 ~Ls~n~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~Ls~N~l~ 455 (598)
+|++|+|++..+..| ..+++|+.|+|++|+|++..+..+..++. ++.|+|++|.+.
T Consensus 142 ~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 142 YLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 666666664333333 45666666666666666444445555554 356666666664
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=3.7e-21 Score=207.92 Aligned_cols=196 Identities=21% Similarity=0.251 Sum_probs=101.5
Q ss_pred CCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCC
Q 040109 134 GSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRS 213 (598)
Q Consensus 134 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~ 213 (598)
..+++|+.|+|++|.++ .+|..++++++|+.|++++|.... ..+.. + ..+...+ ..+..+..+++
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~-~l~~l------l-----~~~~~~~--~~~~~l~~l~~ 410 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLL-TIILL------M-----RALDPLL--YEKETLQYFST 410 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHH-HHHHH------H-----HHHCTGG--GHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhh-hHHHH------H-----Hhccccc--CCHHHHHHHHh
Confidence 44666667777777665 566667777777777765543100 00000 0 0000111 13345555555
Q ss_pred CcEEe-ccCcCCCCCCCC-----hhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcC
Q 040109 214 LTTLY-LGHCDLPPISTP-----SLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGH 287 (598)
Q Consensus 214 L~~L~-l~~n~l~~~~~~-----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~ 287 (598)
|+.|+ ++.|.+...... .+..... ..|+.|++++|.+++ +|. +..++. |+.|++++|.++ .+|..++.
T Consensus 411 L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~-~~L~~L~Ls~n~l~~-lp~-~~~l~~--L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 411 LKAVDPMRAAYLDDLRSKFLLENSVLKMEY-ADVRVLHLAHKDLTV-LCH-LEQLLL--VTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp HHHHCGGGHHHHHHHHHHHHHHHHHHHHHH-TTCSEEECTTSCCSS-CCC-GGGGTT--CCEEECCSSCCC-CCCGGGGG
T ss_pred cccCcchhhcccchhhhhhhhcccccccCc-cCceEEEecCCCCCC-CcC-cccccc--CcEeecCccccc-ccchhhhc
Confidence 55555 333322110000 0000011 345666666666654 343 555555 666666666666 55566666
Q ss_pred CCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccch-hhhhhhcCCCCCCCCCCCEEEccCcccccc
Q 040109 288 MASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGEL-SEFIQNVSSGSTKNSSLEWLYLASNEITGT 358 (598)
Q Consensus 288 l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~ 358 (598)
+++|++|+|++|.++++| .+..+++|+.|+|++|.+++.. |..+..++ +|+.|++++|.+++.
T Consensus 485 l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~-------~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 485 LRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCP-------RLVLLNLQGNSLCQE 548 (567)
T ss_dssp CTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCT-------TCCEEECTTSGGGGS
T ss_pred CCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCC-------CCCEEEecCCcCCCC
Confidence 666666666666666665 5666666666666666666554 55555555 566666666665543
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=3.8e-18 Score=185.52 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=7.5
Q ss_pred CCCCCcEEeccCcCCCC
Q 040109 210 NLRSLTTLYLGHCDLPP 226 (598)
Q Consensus 210 ~l~~L~~L~l~~n~l~~ 226 (598)
.+++|+.|++++|.+..
T Consensus 41 ~L~~L~~L~l~~n~i~~ 57 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKS 57 (605)
T ss_dssp HHTTCCCCBCTTCCCCC
T ss_pred cCCCCCEEECcCCCCCC
Confidence 34444444444444443
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=3e-18 Score=186.32 Aligned_cols=172 Identities=25% Similarity=0.340 Sum_probs=82.7
Q ss_pred cCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCC
Q 040109 109 LKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSL 188 (598)
Q Consensus 109 ~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L 188 (598)
..+++|+.|++++|.+.. ++ .+..+++|++|+|++|.+++..| +..+++|++|+|++|.+.. ++.+..+++|
T Consensus 40 ~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~---l~~l~~l~~L 111 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD---LSSLKDLKKL 111 (605)
T ss_dssp HHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC---CTTSTTCTTC
T ss_pred hcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC---ChhhccCCCC
Confidence 345555555555555543 22 34555555555555555553332 5555555555555555411 1234455555
Q ss_pred CEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCcc
Q 040109 189 RYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVD 268 (598)
Q Consensus 189 ~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~ 268 (598)
++|+|++|.+..+ ..+..+++|+.|++++|.+++. +.+..++. |+
T Consensus 112 ~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~N~l~~l-----------------------------~~l~~l~~--L~ 156 (605)
T 1m9s_A 112 KSLSLEHNGISDI----NGLVHLPQLESLYLGNNKITDI-----------------------------TVLSRLTK--LD 156 (605)
T ss_dssp CEEECTTSCCCCC----GGGGGCTTCSEEECCSSCCCCC-----------------------------GGGGSCTT--CS
T ss_pred CEEEecCCCCCCC----ccccCCCccCEEECCCCccCCc-----------------------------hhhcccCC--CC
Confidence 5555555554443 1233444444444444444332 23333344 44
Q ss_pred EEEccCCccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCcc
Q 040109 269 HIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRG 326 (598)
Q Consensus 269 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~ 326 (598)
.|+|++|.+++..| +..+++|+.|+|++|.++++| .+..+++|+.|+|++|++.+
T Consensus 157 ~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 157 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEEC
T ss_pred EEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcC
Confidence 44444444444333 445555555555555555543 34455555555555555543
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=8.8e-18 Score=156.55 Aligned_cols=154 Identities=19% Similarity=0.248 Sum_probs=113.4
Q ss_pred cCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCC
Q 040109 286 GHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGF 365 (598)
Q Consensus 286 ~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l 365 (598)
..+++|++|++++|.++.+| .+..+++|++|++++|.+... ..+..++ +|++|++++|.+++..|.
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~--~~l~~l~-------~L~~L~l~~n~l~~~~~~---- 106 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNY--NPISGLS-------NLERLRIMGKDVTSDKIP---- 106 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCC--GGGTTCT-------TCCEEEEECTTCBGGGSC----
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcc--hhhhcCC-------CCCEEEeECCccCcccCh----
Confidence 44566777777777777666 566777777777777755432 2455555 777777777777653321
Q ss_pred CcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCc-CcccCCcccCCCCCC
Q 040109 366 PGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNN-LTGQITPRIGQLKSL 444 (598)
Q Consensus 366 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L 444 (598)
.++.+++|++|++++|++++..|..+..+++|++|++++|+ ++ .+| .+..+++|
T Consensus 107 -----------------------~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L 161 (197)
T 4ezg_A 107 -----------------------NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPEL 161 (197)
T ss_dssp -----------------------CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSC
T ss_pred -----------------------hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCC
Confidence 23346678888888888887788889999999999999998 55 566 68899999
Q ss_pred CeeeCCCCccCCCCcccccCCCCCCEEeCCCCccee
Q 040109 445 DFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFSG 480 (598)
Q Consensus 445 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 480 (598)
++|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus 162 ~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 162 KSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred CEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 999999999985 43 78889999999999998753
No 115
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=4.7e-18 Score=157.64 Aligned_cols=115 Identities=22% Similarity=0.288 Sum_probs=79.6
Q ss_pred cccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEE
Q 040109 392 ILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVM 471 (598)
Q Consensus 392 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 471 (598)
.+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..|..+..+++|++|
T Consensus 52 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE
Confidence 34456666666666666667777788888888888888887777778888888888888888887777788888888888
Q ss_pred eCCCCcceecCCCCCccCccCCCccCCCCCCCCCC
Q 040109 472 DLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLP 506 (598)
Q Consensus 472 ~ls~N~l~~~~p~~~~~~~l~~~~~~gnp~lC~~~ 506 (598)
++++|++.|.++.......+....+.++...|+.|
T Consensus 132 ~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 132 NLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp ECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred EeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 88888887766543222222223344444445433
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=7.3e-18 Score=164.55 Aligned_cols=167 Identities=20% Similarity=0.301 Sum_probs=116.5
Q ss_pred ccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCC
Q 040109 267 VDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLE 346 (598)
Q Consensus 267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~ 346 (598)
+..++++++.+++.. .+..+++|++|++++|.++.+| .+..+++|+.|++++|++++..+ +..++ +|+
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~-------~L~ 88 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLT-------KLE 88 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCS-------SCC
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCC-------CCC
Confidence 444555666655332 3556666777777777776666 46667777777777777766554 55555 677
Q ss_pred EEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECc
Q 040109 347 WLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLS 426 (598)
Q Consensus 347 ~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 426 (598)
.|++++|++++ +|.+ .. ++|+.|++++|++++ ++ .+..+++|+.|+++
T Consensus 89 ~L~L~~N~l~~-l~~~----------------------------~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls 136 (263)
T 1xeu_A 89 ELSVNRNRLKN-LNGI----------------------------PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIR 136 (263)
T ss_dssp EEECCSSCCSC-CTTC----------------------------CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECT
T ss_pred EEECCCCccCC-cCcc----------------------------cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECC
Confidence 77777777664 2211 01 467888888888874 33 57888888888888
Q ss_pred CCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcceec
Q 040109 427 NNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFSGK 481 (598)
Q Consensus 427 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 481 (598)
+|++++. + .+..+++|++|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 137 ~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 137 NNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 8888853 4 678888888888888888765 6678888888888888888744
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=7.6e-20 Score=197.66 Aligned_cols=216 Identities=19% Similarity=0.125 Sum_probs=120.6
Q ss_pred cCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhc
Q 040109 183 SYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNV 262 (598)
Q Consensus 183 ~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 262 (598)
..+++|+.|+|++|.++. +|..++.+++|++|++++|.. .......+ ..+...+..|..+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~---Lp~~i~~l~~L~~L~l~~n~~---------l~~l~~ll-----~~~~~~~~~~~~l~~l 408 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTV---LQSELESCKELQELEPENKWC---------LLTIILLM-----RALDPLLYEKETLQYF 408 (567)
T ss_dssp STTTTSSSCCCCHHHHHH---HHHHHHHHHHHHHHCTTCHHH---------HHHHHHHH-----HHHCTGGGHHHHHHHH
T ss_pred ccCccceeccCChhhHHh---hHHHHHHHHHHHHhccccchh---------hhhHHHHH-----HhcccccCCHHHHHHH
Confidence 567888889999988875 678888999999998866531 00000000 1122334566666776
Q ss_pred CccCccEEE-ccCCccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCC
Q 040109 263 SSNLVDHID-LGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTK 341 (598)
Q Consensus 263 ~~~~L~~L~-L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~ 341 (598)
++ |+.|+ ++.|.+. .|+.+.+++|.++.+|. ..|+.|++++|.+++. |. +..++
T Consensus 409 ~~--L~~L~~l~~n~~~-----------~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~l-p~-~~~l~----- 463 (567)
T 1dce_A 409 ST--LKAVDPMRAAYLD-----------DLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTVL-CH-LEQLL----- 463 (567)
T ss_dssp HH--HHHHCGGGHHHHH-----------HHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSSC-CC-GGGGT-----
T ss_pred Hh--cccCcchhhcccc-----------hhhhhhhhcccccccCc-----cCceEEEecCCCCCCC-cC-ccccc-----
Confidence 66 77666 4444332 33444455555544432 2466777777777653 33 55555
Q ss_pred CCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCc
Q 040109 342 NSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLV 421 (598)
Q Consensus 342 ~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 421 (598)
+|+.|+|++|.++ .+| ..++.+++|+.|+|++|+|++ +| .++.+++|+
T Consensus 464 --~L~~L~Ls~N~l~-~lp---------------------------~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~ 511 (567)
T 1dce_A 464 --LVTHLDLSHNRLR-ALP---------------------------PALAALRCLEVLQASDNALEN-VD-GVANLPRLQ 511 (567)
T ss_dssp --TCCEEECCSSCCC-CCC---------------------------GGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCC
T ss_pred --cCcEeecCccccc-ccc---------------------------hhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCc
Confidence 5555555555554 222 112334445555555555553 44 555666666
Q ss_pred EEECcCCcCcccC-CcccCCCCCCCeeeCCCCccCCCCcc---cccCCCCCCEEe
Q 040109 422 ALNLSNNNLTGQI-TPRIGQLKSLDFLDLSINHFFGGIPS---SLSRLRLLSVMD 472 (598)
Q Consensus 422 ~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~ 472 (598)
.|+|++|++++.. |..++.+++|+.|+|++|++++..|. .+..+++|+.|+
T Consensus 512 ~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp EEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred EEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 6666666666544 55666666666666666666544332 123355565554
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=5.8e-17 Score=150.93 Aligned_cols=148 Identities=16% Similarity=0.171 Sum_probs=77.7
Q ss_pred ccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCC
Q 040109 267 VDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLE 346 (598)
Q Consensus 267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~ 346 (598)
++.|++++|.++ .+| .+..+++|++|++++|.++.++ .+..+++|++|++++|.+++..+..+..++ +|+
T Consensus 46 L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-------~L~ 115 (197)
T 4ezg_A 46 LTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLT-------SLT 115 (197)
T ss_dssp CCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCT-------TCC
T ss_pred ccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCC-------CCC
Confidence 444444444444 223 3444445555555555444332 344455555555555555444444444444 455
Q ss_pred EEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCc-CCCcCchhhhcccCCcEEEC
Q 040109 347 WLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNK-LGGEVPEEIMDLVGLVALNL 425 (598)
Q Consensus 347 ~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L 425 (598)
+|++++|.+++..| ..+..+++|++|++++|. ++ .+| .+..+++|+.|++
T Consensus 116 ~L~Ls~n~i~~~~~---------------------------~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l 166 (197)
T 4ezg_A 116 LLDISHSAHDDSIL---------------------------TKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNI 166 (197)
T ss_dssp EEECCSSBCBGGGH---------------------------HHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEEC
T ss_pred EEEecCCccCcHhH---------------------------HHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEEC
Confidence 55555555443211 122334456666666665 43 444 5677777777788
Q ss_pred cCCcCcccCCcccCCCCCCCeeeCCCCccC
Q 040109 426 SNNNLTGQITPRIGQLKSLDFLDLSINHFF 455 (598)
Q Consensus 426 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 455 (598)
++|++++ ++ .+..+++|++|++++|++.
T Consensus 167 ~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 167 QFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp TTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred CCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 7777774 33 5677777888888877764
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=2.4e-17 Score=160.86 Aligned_cols=168 Identities=20% Similarity=0.301 Sum_probs=113.4
Q ss_pred CccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEc
Q 040109 240 SLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVL 319 (598)
Q Consensus 240 ~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 319 (598)
++..++++++.+++. + .+..++. |+.|++++|.++. ++ .+..+++|++|++++|+++++|. +..+++|+.|++
T Consensus 20 ~l~~l~l~~~~i~~~-~-~~~~l~~--L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDL-V-SQKELSG--VQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHTCSCTTSE-E-CHHHHTT--CSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHhcCCCcccc-c-chhhcCc--CcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC
Confidence 344445555555432 2 3445555 6666666666653 33 46666777777777777777665 667777777777
Q ss_pred ccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceE
Q 040109 320 SYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKII 399 (598)
Q Consensus 320 s~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 399 (598)
++|++++..+. .. . +|+.|++++|.+++. + .+..+++|+.|
T Consensus 93 ~~N~l~~l~~~--~~-~-------~L~~L~L~~N~l~~~-~----------------------------~l~~l~~L~~L 133 (263)
T 1xeu_A 93 NRNRLKNLNGI--PS-A-------CLSRLFLDNNELRDT-D----------------------------SLIHLKNLEIL 133 (263)
T ss_dssp CSSCCSCCTTC--CC-S-------SCCEEECCSSCCSBS-G----------------------------GGTTCTTCCEE
T ss_pred CCCccCCcCcc--cc-C-------cccEEEccCCccCCC-h----------------------------hhcCcccccEE
Confidence 77777653221 11 2 677788887777642 1 13446678888
Q ss_pred eccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCC
Q 040109 400 DLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGG 457 (598)
Q Consensus 400 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 457 (598)
++++|++++ ++ .+..+++|+.|++++|++++. ..+..+++|+.|++++|.+++.
T Consensus 134 ~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 134 SIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 888888874 34 688889999999999999865 6788889999999999998755
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=5.7e-18 Score=188.70 Aligned_cols=263 Identities=20% Similarity=0.162 Sum_probs=126.7
Q ss_pred cCCcHHHHHHHHHHHhcCCC-CCCCCCCCCCCCCCCCCCCccCeeeCCCCCcEEEEEcCCCCCCCCCCCceecCccccCC
Q 040109 33 ISCLDEEKEALLAFKQGLID-ESGILSSWGREDEKRNCCKWRGVRCSNKTGHVLGLDLRALSDSPVDALKGTINPSLLKL 111 (598)
Q Consensus 33 ~~~~~~~~~~l~~~k~~~~~-~~~~l~~W~~~~~~~~~c~w~gv~C~~~~~~v~~l~l~~~~~~~~~~l~g~l~~~l~~l 111 (598)
.+..+.++.+++++..+... ....-..|.. .....+.|.++.++. ++++.+++.+ +.+.. .+..+...
T Consensus 127 ~s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~--~~~~~l~L~~------n~~~~-~~~~~l~~ 195 (727)
T 4b8c_D 127 KSLVDCTKQALMEMADTLTDSKTAKKQQPTG--DSTPSGTATNSAVST--PLTPKIELFA------NGKDE-ANQALLQH 195 (727)
T ss_dssp -----CCCHHHHHHHHHHHHHHTTC-------------------------------------------------------
T ss_pred hhccccchhhhhhhhhhcccccCcccCCCcC--CCCccccCCCceecC--CccceEEeeC------CCCCc-chhhHhhc
Confidence 34567788899998877641 1122345642 345567898888853 6788999876 44543 34433333
Q ss_pred CCCCEEE-----CcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCC
Q 040109 112 QHLTYLD-----LSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLS 186 (598)
Q Consensus 112 ~~L~~L~-----Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~ 186 (598)
..|+.+. ++.|.+. ..+..+..+++|++|+|++|.+. .+|..+.++++|++|+|++|.+. ..+..+.+++
T Consensus 196 l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~ 270 (727)
T 4b8c_D 196 KKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLS 270 (727)
T ss_dssp ----------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGT
T ss_pred CccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCC
Confidence 3333332 3333333 25777888999999999999998 77777889999999999999983 4556789999
Q ss_pred CCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccC
Q 040109 187 SLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNL 266 (598)
Q Consensus 187 ~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~ 266 (598)
+|++|+|++|.++.+ |..+..+++|++|+|++|.++.++.. +.. + ++|+.|+|++|.+++.+|..+......
T Consensus 271 ~L~~L~Ls~N~l~~l---p~~~~~l~~L~~L~L~~N~l~~lp~~-~~~--l-~~L~~L~L~~N~l~~~~p~~~~~~~~~- 342 (727)
T 4b8c_D 271 NLRVLDLSHNRLTSL---PAELGSCFQLKYFYFFDNMVTTLPWE-FGN--L-CNLQFLGVEGNPLEKQFLKILTEKSVT- 342 (727)
T ss_dssp TCCEEECTTSCCSSC---CSSGGGGTTCSEEECCSSCCCCCCSS-TTS--C-TTCCCEECTTSCCCSHHHHHHHHHHHH-
T ss_pred CCCEEeCcCCcCCcc---ChhhcCCCCCCEEECCCCCCCccChh-hhc--C-CCccEEeCCCCccCCCChHHHhhcchh-
Confidence 999999999999865 45688899999999999999866442 332 2 899999999999998888887665321
Q ss_pred ccEEEccCCccccccchhhcCCCCccEEeeccC--------CCCC-cchhhcCCCCCcEEEcccCcCc
Q 040109 267 VDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSN--------RLRE-VPKFLGNMSSLKMLVLSYNELR 325 (598)
Q Consensus 267 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n--------~l~~-lp~~l~~l~~L~~L~Ls~n~l~ 325 (598)
...+++++|.+++.+|. .|+.|+++.| .+.+ .+..+..+..+....+++|-+.
T Consensus 343 ~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 343 GLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHHHHHHHCCCCCCCCC------C-----------------------------------------CCC
T ss_pred hhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 33478889999888775 4556666666 2222 2233445566666777777664
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=1.2e-17 Score=185.98 Aligned_cols=181 Identities=20% Similarity=0.218 Sum_probs=96.4
Q ss_pred cchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhh
Q 040109 255 IYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQN 334 (598)
Q Consensus 255 ~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~ 334 (598)
.+..+..+.. |+.|+|++|.+. .+|..+..+++|++|+|++|.++.+|..+..+++|++|+|++|.++ .+|..+..
T Consensus 216 ~~~~~~~l~~--L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 216 PKDSKYDDQL--WHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp ------CCCC--CCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred ChhhhccCCC--CcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 3455566666 777777777776 5555566777777777777777777777777777777777777777 44666666
Q ss_pred cCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhh
Q 040109 335 VSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEI 414 (598)
Q Consensus 335 l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l 414 (598)
+. +|++|+|++|.++ .+|. .++.+++|+.|+|++|.+++.+|..+
T Consensus 292 l~-------~L~~L~L~~N~l~-~lp~---------------------------~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 292 CF-------QLKYFYFFDNMVT-TLPW---------------------------EFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp GT-------TCSEEECCSSCCC-CCCS---------------------------STTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CC-------CCCEEECCCCCCC-ccCh---------------------------hhhcCCCccEEeCCCCccCCCChHHH
Confidence 66 7777777777765 3332 13445667777888888777777776
Q ss_pred hcccC-CcEEECcCCcCcccCCcccCCCCCCCeeeCCCC--------ccCCCCcccccCCCCCCEEeCCCCccee
Q 040109 415 MDLVG-LVALNLSNNNLTGQITPRIGQLKSLDFLDLSIN--------HFFGGIPSSLSRLRLLSVMDLSYNNFSG 480 (598)
Q Consensus 415 ~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N--------~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 480 (598)
..+.. +..|+|++|.+++.+|. .|+.|++++| .+.+..+..+.++..+....+++|-+.+
T Consensus 337 ~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 337 TEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp HHHHHHHHHHHHHHCCCCCCCCC------C-----------------------------------------CCCG
T ss_pred hhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeecccccc
Confidence 55422 23467778888777765 3455566666 3333344445566666777777777653
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=8.3e-17 Score=149.16 Aligned_cols=176 Identities=22% Similarity=0.222 Sum_probs=107.2
Q ss_pred cEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhh-hhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCcc
Q 040109 292 RYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSE-FIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLM 370 (598)
Q Consensus 292 ~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~ 370 (598)
+++++++|.++.+|..+. ++|++|++++|.+.+..+. .+..++ +|++|++++|.+++..|.
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~-------~L~~L~Ls~N~l~~~~~~--------- 72 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLP-------HLVKLELKRNQLTGIEPN--------- 72 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCT-------TCCEEECCSSCCCCBCTT---------
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCC-------CCCEEECCCCCCCCcCHh---------
Confidence 445555555555554332 2555555555555554443 244444 566666666665544331
Q ss_pred ccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCC
Q 040109 371 PLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLS 450 (598)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 450 (598)
.+..+++|++|+|++|++++..+..|..+++|++|+|++|++++..|..+..+++|++|+|+
T Consensus 73 ------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 73 ------------------AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp ------------------TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred ------------------HcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 22335567777777777776777778889999999999999998889999999999999999
Q ss_pred CCccCCCCccc-ccCCCCCCEEeCCCCcceecCCCCCccCccCCCccCCCCCCCCCCC
Q 040109 451 INHFFGGIPSS-LSRLRLLSVMDLSYNNFSGKIPKGTQLQRFGASTYAGNPELCGLPL 507 (598)
Q Consensus 451 ~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~gnp~lC~~~~ 507 (598)
+|.+++..+.. +. ..++...+..+...+..|.. +......++..+...|..+.
T Consensus 135 ~N~l~c~c~l~~~~--~~l~~~~~~~~~~~C~~P~~--l~~~~l~~l~~~~~~C~~~~ 188 (192)
T 1w8a_A 135 SNPFNCNCHLAWFA--EWLRKKSLNGGAARCGAPSK--VRDVQIKDLPHSEFKCSSEN 188 (192)
T ss_dssp TCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCSSTT--TTTSBGGGSCTTTCCCCCC-
T ss_pred CCCccCcCcchHHH--HHHHHcCCCCCCCCCCCChH--HcCCChhhCcHhhcCcCCCC
Confidence 99998765532 11 11222344455555555543 23333344555666665443
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=2.1e-16 Score=146.44 Aligned_cols=114 Identities=24% Similarity=0.341 Sum_probs=102.6
Q ss_pred ccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEe
Q 040109 393 LGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMD 472 (598)
Q Consensus 393 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 472 (598)
.++|+.|++++|+++ .+|..|.++++|+.|+|++|++++..+..|.++++|++|+|++|++++..|..|..+++|++|+
T Consensus 30 ~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 30 PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence 347999999999998 7889999999999999999999988888999999999999999999988888999999999999
Q ss_pred CCCCcceecCCCC--CccCccCCCccCCCCCCCCCCCC
Q 040109 473 LSYNNFSGKIPKG--TQLQRFGASTYAGNPELCGLPLP 508 (598)
Q Consensus 473 ls~N~l~~~~p~~--~~~~~l~~~~~~gnp~lC~~~~~ 508 (598)
|++|++++ +|.. ..++++..+.+.+||+.|+|.+.
T Consensus 109 L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~C~c~l~ 145 (193)
T 2wfh_A 109 LHGNDISV-VPEGAFNDLSALSHLAIGANPLYCDCNMQ 145 (193)
T ss_dssp CCSSCCCB-CCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred CCCCCCCe-eChhhhhcCccccEEEeCCCCeecCCcCH
Confidence 99999985 4543 46788899999999999998753
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=5.4e-16 Score=143.71 Aligned_cols=91 Identities=24% Similarity=0.245 Sum_probs=75.0
Q ss_pred ccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEe
Q 040109 393 LGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMD 472 (598)
Q Consensus 393 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 472 (598)
+++|+.|+|++|.|++..+..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|+
T Consensus 53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence 44566666666666666667788889999999999999977778899999999999999999866666788999999999
Q ss_pred CCCCcceecCC
Q 040109 473 LSYNNFSGKIP 483 (598)
Q Consensus 473 ls~N~l~~~~p 483 (598)
+++|++.+.+.
T Consensus 133 L~~N~~~C~c~ 143 (193)
T 2wfh_A 133 IGANPLYCDCN 143 (193)
T ss_dssp CCSSCEECSGG
T ss_pred eCCCCeecCCc
Confidence 99999987554
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=1.4e-15 Score=137.73 Aligned_cols=92 Identities=26% Similarity=0.211 Sum_probs=74.7
Q ss_pred cccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccC-CcccCCCCCCCeeeCCCCccCCCCc---ccccCCCC
Q 040109 392 ILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQI-TPRIGQLKSLDFLDLSINHFFGGIP---SSLSRLRL 467 (598)
Q Consensus 392 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~ 467 (598)
.+++|++|++++|++++.+|..+..+++|++|++++|++++.. +..+..+++|++|++++|.+++..+ ..+..+++
T Consensus 69 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~ 148 (168)
T 2ell_A 69 KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQ 148 (168)
T ss_dssp CCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSS
T ss_pred cCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCcc
Confidence 3556788888888888768888888999999999999998532 2788899999999999999986655 47889999
Q ss_pred CCEEeCCCCcceecCCC
Q 040109 468 LSVMDLSYNNFSGKIPK 484 (598)
Q Consensus 468 L~~L~ls~N~l~~~~p~ 484 (598)
|++|++++|.+. .+|.
T Consensus 149 L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 149 LTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp CCEETTEETTSC-BCCS
T ss_pred CcEecCCCCChh-hccc
Confidence 999999999886 4554
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=3.6e-15 Score=136.15 Aligned_cols=92 Identities=23% Similarity=0.223 Sum_probs=68.3
Q ss_pred ccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEe
Q 040109 393 LGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMD 472 (598)
Q Consensus 393 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 472 (598)
+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 34456666666666645555667788888888888888866666678888888888888888866555677888888888
Q ss_pred CCCCcceecCCC
Q 040109 473 LSYNNFSGKIPK 484 (598)
Q Consensus 473 ls~N~l~~~~p~ 484 (598)
+++|++.+.+|.
T Consensus 131 l~~N~~~~~~~~ 142 (177)
T 2o6r_A 131 LHTNPWDCSCPR 142 (177)
T ss_dssp CCSSCBCCCHHH
T ss_pred ecCCCeeccCcc
Confidence 888888876653
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=2.8e-15 Score=135.60 Aligned_cols=130 Identities=25% Similarity=0.278 Sum_probs=75.5
Q ss_pred ccEEEccCCccc-cccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCC
Q 040109 267 VDHIDLGSNRLH-GSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSL 345 (598)
Q Consensus 267 L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L 345 (598)
++.|++++|.++ +.+|..+..+++|++|++++|.++++ ..+..+++|++|++++|.+.+.+|..+..++ +|
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-------~L 97 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLP-------NL 97 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT-------TC
T ss_pred CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCC-------CC
Confidence 555555555555 44555555566666666666666655 4555566666666666666655555554444 45
Q ss_pred CEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCc-CchhhhcccCCcEEE
Q 040109 346 EWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGE-VPEEIMDLVGLVALN 424 (598)
Q Consensus 346 ~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~ 424 (598)
+.|++++|.++ +. .+..+..+++|+.|+
T Consensus 98 ~~L~Ls~N~l~---------------------------------------------------~~~~~~~l~~l~~L~~L~ 126 (168)
T 2ell_A 98 THLNLSGNKLK---------------------------------------------------DISTLEPLKKLECLKSLD 126 (168)
T ss_dssp CEEECBSSSCC---------------------------------------------------SSGGGGGGSSCSCCCEEE
T ss_pred CEEeccCCccC---------------------------------------------------cchhHHHHhcCCCCCEEE
Confidence 55555554443 21 114566666677777
Q ss_pred CcCCcCcccCC---cccCCCCCCCeeeCCCCccC
Q 040109 425 LSNNNLTGQIT---PRIGQLKSLDFLDLSINHFF 455 (598)
Q Consensus 425 Ls~N~l~~~~p---~~l~~l~~L~~L~Ls~N~l~ 455 (598)
+++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 127 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 127 LFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 77776664433 35666777777777777664
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.59 E-value=5.4e-16 Score=156.68 Aligned_cols=283 Identities=14% Similarity=0.095 Sum_probs=139.4
Q ss_pred CCCCCEEECCCCCCCCCCccccCC-CCCCCEEEccCCCCCC-CCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcC---
Q 040109 136 LSKLSELALSSAQLAGPIPHQLGN-LSRLQVLDLRFNNLFS-SGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSN--- 210 (598)
Q Consensus 136 l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~--- 210 (598)
+.++++|.++++ +.......+.. +++|++|||++|++.. ... -+.++.++.+.+..|.+.. ..|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~---~~~~~~~~~~~~~~~~I~~-----~aF~~~~~ 94 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGK---AGTYPNGKFYIYMANFVPA-----YAFSNVVN 94 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEES---SSSSGGGCCEEECTTEECT-----TTTEEEET
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCc---cccccccccccccccccCH-----HHhccccc
Confidence 567888888764 22111122333 7788888888888731 111 1112224445555553332 45556
Q ss_pred -----CCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCcc----cccc
Q 040109 211 -----LRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRL----HGSI 281 (598)
Q Consensus 211 -----l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l----~~~~ 281 (598)
+++|+.+++.+ .++.+...+|... ++|+.+++++|.+....+..|.++.. +..+....+.. ....
T Consensus 95 ~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~---~~L~~l~l~~n~i~~i~~~aF~~~~~--l~~l~~~~~~~~~~~~~i~ 168 (329)
T 3sb4_A 95 GVTKGKQTLEKVILSE-KIKNIEDAAFKGC---DNLKICQIRKKTAPNLLPEALADSVT--AIFIPLGSSDAYRFKNRWE 168 (329)
T ss_dssp TEEEECTTCCC-CBCT-TCCEECTTTTTTC---TTCCEEEBCCSSCCEECTTSSCTTTC--EEEECTTCTHHHHTSTTTT
T ss_pred ccccccCCCcEEECCc-cccchhHHHhhcC---cccceEEcCCCCccccchhhhcCCCc--eEEecCcchhhhhcccccc
Confidence 77777777776 6666555444433 66677777666665444444544443 44444333211 1111
Q ss_pred chhhcCCCCcc-EEeeccCCCCCcchhh----cCCCCCcEEEcccCcCccchhhhhh-hcCCCCCCCCCCCEEEccCccc
Q 040109 282 PVAFGHMASLR-YLGLLSNRLREVPKFL----GNMSSLKMLVLSYNELRGELSEFIQ-NVSSGSTKNSSLEWLYLASNEI 355 (598)
Q Consensus 282 p~~l~~l~~L~-~L~Ls~n~l~~lp~~l----~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~g~~~~~~L~~L~Ls~N~l 355 (598)
...|.++..|+ .+.+... ..++..+ ....+++.+.+.++-.. .....+. .++ +|+.+++++|.+
T Consensus 169 ~~~f~~~~~L~~~i~~~~~--~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~-------~L~~l~L~~n~i 238 (329)
T 3sb4_A 169 HFAFIEGEPLETTIQVGAM--GKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMP-------NLVSLDISKTNA 238 (329)
T ss_dssp TSCEEESCCCEEEEEECTT--CCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCT-------TCCEEECTTBCC
T ss_pred ccccccccccceeEEecCC--CcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcC-------CCeEEECCCCCc
Confidence 22333444444 3333221 1122211 12344455555444221 1111111 233 566666666555
Q ss_pred cccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCc-EEECcCCcCcccC
Q 040109 356 TGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLV-ALNLSNNNLTGQI 434 (598)
Q Consensus 356 ~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~ 434 (598)
+. +|. ..+..+.+|+.++|.+| +....+.+|.++++|+ .+++.+ +++...
T Consensus 239 ~~-I~~--------------------------~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~ 289 (329)
T 3sb4_A 239 TT-IPD--------------------------FTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIE 289 (329)
T ss_dssp CE-ECT--------------------------TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEEC
T ss_pred ce-ecH--------------------------hhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEc
Confidence 42 111 12334555666666655 5444455566666666 666665 555444
Q ss_pred CcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEe
Q 040109 435 TPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMD 472 (598)
Q Consensus 435 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 472 (598)
+.+|.++++|+.+++++|+++...+.+|.++++|+.++
T Consensus 290 ~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 290 FGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred hhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 55666666666666666666555555666666666554
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=2.6e-15 Score=132.94 Aligned_cols=83 Identities=24% Similarity=0.229 Sum_probs=67.5
Q ss_pred ccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCccc-CCcccCCCCCCCeeeCCCCccCCCCc---ccccCCCCC
Q 040109 393 LGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQ-ITPRIGQLKSLDFLDLSINHFFGGIP---SSLSRLRLL 468 (598)
Q Consensus 393 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L 468 (598)
+++|++|++++|.+++.+|..+..+++|++|++++|++++. .+..+..+++|++|++++|++++..+ ..+..+++|
T Consensus 63 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 142 (149)
T 2je0_A 63 LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQL 142 (149)
T ss_dssp CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTC
T ss_pred CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCc
Confidence 55678888888888866888888889999999999998863 34778889999999999999886655 578888999
Q ss_pred CEEeCCC
Q 040109 469 SVMDLSY 475 (598)
Q Consensus 469 ~~L~ls~ 475 (598)
+.|++++
T Consensus 143 ~~L~l~d 149 (149)
T 2je0_A 143 TYLDGYD 149 (149)
T ss_dssp CEETTBC
T ss_pred ccccCCC
Confidence 9998864
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=5.4e-16 Score=156.68 Aligned_cols=283 Identities=13% Similarity=0.070 Sum_probs=160.4
Q ss_pred CCCCCEEECcCCCCCCCCcchhcCC-CCCCCEEECCCCCCC--CCCccccCCCCCCCEEEccCCCCCCCCCcccccC---
Q 040109 111 LQHLTYLDLSWNNFSGSPIPEFIGS-LSKLSELALSSAQLA--GPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSY--- 184 (598)
Q Consensus 111 l~~L~~L~Ls~n~l~~~~~p~~l~~-l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~--- 184 (598)
+.+++.|.++++ +... --..+.. +++|++|||++|++. ...+ +.++.++.+.+..|.+ +...|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~-~~~~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~~I----~~~aF~~~~~ 94 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAE-DFRHLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMANFV----PAYAFSNVVN 94 (329)
T ss_dssp HHHCSEEEEEEE-ECHH-HHHHHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTTEE----CTTTTEEEET
T ss_pred hCceeEEEEecc-ccHH-HHHHHHHhhccCeEEecCcceeEEecCcc---cccccccccccccccc----CHHHhccccc
Confidence 567778887764 2211 1122333 677888888888776 1111 1222244455554433 2233555
Q ss_pred -----CCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCC----CCCCc
Q 040109 185 -----LSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNY----LTNSI 255 (598)
Q Consensus 185 -----l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~----l~~~~ 255 (598)
+++|+.+++.+ .++.+++ .+|.++++|+.+++++|.+..+.+.+|... .++..+....+. .....
T Consensus 95 ~~~~g~~~L~~l~L~~-~i~~I~~--~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~---~~l~~l~~~~~~~~~~~~~i~ 168 (329)
T 3sb4_A 95 GVTKGKQTLEKVILSE-KIKNIED--AAFKGCDNLKICQIRKKTAPNLLPEALADS---VTAIFIPLGSSDAYRFKNRWE 168 (329)
T ss_dssp TEEEECTTCCC-CBCT-TCCEECT--TTTTTCTTCCEEEBCCSSCCEECTTSSCTT---TCEEEECTTCTHHHHTSTTTT
T ss_pred ccccccCCCcEEECCc-cccchhH--HHhhcCcccceEEcCCCCccccchhhhcCC---CceEEecCcchhhhhcccccc
Confidence 77777777776 6666544 567777777777777777666555444331 444444443311 11111
Q ss_pred chhhhhcCccCcc-EEEccCCccccccchhh----cCCCCccEEeeccCCCCC-cchhhcCCCCCcEEEcccCcCccchh
Q 040109 256 YPWLLNVSSNLVD-HIDLGSNRLHGSIPVAF----GHMASLRYLGLLSNRLRE-VPKFLGNMSSLKMLVLSYNELRGELS 329 (598)
Q Consensus 256 ~~~l~~~~~~~L~-~L~L~~n~l~~~~p~~l----~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~~~~ 329 (598)
...+.++.. ++ .+.+.... .++..+ ....+++.+.+.++-... .......+++|+.+++++|.++...+
T Consensus 169 ~~~f~~~~~--L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~ 243 (329)
T 3sb4_A 169 HFAFIEGEP--LETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPD 243 (329)
T ss_dssp TSCEEESCC--CEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECT
T ss_pred ccccccccc--cceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecH
Confidence 122223333 33 33332211 112111 124455666666543222 11112236777777777777776666
Q ss_pred hhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccc-eEeccCCcCCC
Q 040109 330 EFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIK-IIDLSSNKLGG 408 (598)
Q Consensus 330 ~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~ 408 (598)
..|..+. +|+.+++.+| ++. ++. ..+..+.+|+ .+++.+ +++.
T Consensus 244 ~aF~~~~-------~L~~l~l~~n-i~~-I~~--------------------------~aF~~~~~L~~~l~l~~-~l~~ 287 (329)
T 3sb4_A 244 FTFAQKK-------YLLKIKLPHN-LKT-IGQ--------------------------RVFSNCGRLAGTLELPA-SVTA 287 (329)
T ss_dssp TTTTTCT-------TCCEEECCTT-CCE-ECT--------------------------TTTTTCTTCCEEEEECT-TCCE
T ss_pred hhhhCCC-------CCCEEECCcc-cce-ehH--------------------------HHhhCChhccEEEEEcc-cceE
Confidence 6677666 7777777776 331 221 2344566777 888877 6665
Q ss_pred cCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeC
Q 040109 409 EVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDL 449 (598)
Q Consensus 409 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 449 (598)
..+.+|.++++|+.|++++|+++...+.+|.++++|+.++.
T Consensus 288 I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 288 IEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 66788999999999999999998777778999999998864
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=8.1e-15 Score=129.70 Aligned_cols=82 Identities=26% Similarity=0.378 Sum_probs=54.7
Q ss_pred ccEEEccCCccc-cccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCC
Q 040109 267 VDHIDLGSNRLH-GSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSL 345 (598)
Q Consensus 267 L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L 345 (598)
++.|++++|.++ +.+|..+..+++|++|++++|.++++ ..+..+++|++|++++|.+++.+|..+..++ +|
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-------~L 90 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP-------NL 90 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT-------TC
T ss_pred CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCC-------CC
Confidence 666666666666 56666666777777777777777766 5566677777777777777766666665555 55
Q ss_pred CEEEccCcccc
Q 040109 346 EWLYLASNEIT 356 (598)
Q Consensus 346 ~~L~Ls~N~l~ 356 (598)
++|++++|.++
T Consensus 91 ~~L~ls~N~i~ 101 (149)
T 2je0_A 91 THLNLSGNKIK 101 (149)
T ss_dssp CEEECTTSCCC
T ss_pred CEEECCCCcCC
Confidence 55555555554
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=1.6e-14 Score=131.78 Aligned_cols=114 Identities=22% Similarity=0.190 Sum_probs=100.5
Q ss_pred ccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEe
Q 040109 393 LGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMD 472 (598)
Q Consensus 393 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 472 (598)
.++|+.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 35799999999999977777789999999999999999977777789999999999999999987777889999999999
Q ss_pred CCCCcceecCCCC-CccCccCCCccCCCCCCCCCC
Q 040109 473 LSYNNFSGKIPKG-TQLQRFGASTYAGNPELCGLP 506 (598)
Q Consensus 473 ls~N~l~~~~p~~-~~~~~l~~~~~~gnp~lC~~~ 506 (598)
+++|++++..+.. ..++++..+.+.+||+.|+|+
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999998544433 457889999999999999876
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=2.3e-14 Score=130.65 Aligned_cols=85 Identities=21% Similarity=0.239 Sum_probs=63.0
Q ss_pred ccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCc--ccCCCCCCCeeeCCCCccCCCCccc----ccCCC
Q 040109 393 LGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITP--RIGQLKSLDFLDLSINHFFGGIPSS----LSRLR 466 (598)
Q Consensus 393 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~ 466 (598)
+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|. .+..+++|++|++++|.++ .+|.. +..++
T Consensus 63 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~ 140 (176)
T 1a9n_A 63 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVP 140 (176)
T ss_dssp CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCT
T ss_pred CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCC
Confidence 445677777777777544455578888888888888886 5555 6778888888888888886 45553 77888
Q ss_pred CCCEEeCCCCcce
Q 040109 467 LLSVMDLSYNNFS 479 (598)
Q Consensus 467 ~L~~L~ls~N~l~ 479 (598)
+|+.||+++|...
T Consensus 141 ~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 141 QVRVLDFQKVKLK 153 (176)
T ss_dssp TCSEETTEECCHH
T ss_pred ccceeCCCcCCHH
Confidence 8888888888765
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.51 E-value=3.2e-16 Score=145.98 Aligned_cols=135 Identities=24% Similarity=0.307 Sum_probs=83.8
Q ss_pred cchhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEc
Q 040109 304 VPKFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWK 383 (598)
Q Consensus 304 lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~ 383 (598)
+|..+..+++|++|++++|.+.+ +| .+..++ +|+.|++++|.++ .+|
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~-------~L~~L~l~~n~l~-~l~----------------------- 86 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGME-------NLRILSLGRNLIK-KIE----------------------- 86 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESC-CC-CHHHHT-------TCCEEEEEEEEEC-SCS-----------------------
T ss_pred hhHHHhcCCCCCEEECCCCCCcc-cc-ccccCC-------CCCEEECCCCCcc-ccc-----------------------
Confidence 44455556666666666666555 23 455555 5666666666555 222
Q ss_pred CCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCC-cccCCCCCCCeeeCCCCccCCCCccc-
Q 040109 384 GGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQIT-PRIGQLKSLDFLDLSINHFFGGIPSS- 461 (598)
Q Consensus 384 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~- 461 (598)
.....+++|+.|++++|++++ +| .+..+++|++|++++|++++..+ ..+..+++|++|++++|.+++.+|..
T Consensus 87 ----~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~ 160 (198)
T 1ds9_A 87 ----NLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENN 160 (198)
T ss_dssp ----SHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTT
T ss_pred ----chhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccccc
Confidence 122334567777777777764 44 57777778888888887774322 36777778888888888776655542
Q ss_pred ---------ccCCCCCCEEeCCCCcce
Q 040109 462 ---------LSRLRLLSVMDLSYNNFS 479 (598)
Q Consensus 462 ---------l~~l~~L~~L~ls~N~l~ 479 (598)
+..+++|+.|| +|+++
T Consensus 161 ~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 161 ATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp THHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred chHHHHHHHHHhCCCcEEEC--CcccC
Confidence 67778888776 56554
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=1.3e-13 Score=124.88 Aligned_cols=108 Identities=22% Similarity=0.198 Sum_probs=75.8
Q ss_pred cceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCC
Q 040109 396 IKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSY 475 (598)
Q Consensus 396 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 475 (598)
.+.+++++|.++ .+|..+. ++|++|+|++|+|++..|..|..+++|++|+|++|++++..+..|.++++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 466777777777 4565542 6777777777777766677777777777777777777766666677777777777777
Q ss_pred CcceecCCC-CCccCccCCCccCCCCCCCCCC
Q 040109 476 NNFSGKIPK-GTQLQRFGASTYAGNPELCGLP 506 (598)
Q Consensus 476 N~l~~~~p~-~~~~~~l~~~~~~gnp~lC~~~ 506 (598)
|++++..|. -..++++..+.+.+||+.|+|+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 777754443 2456677777777777777764
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=1.9e-13 Score=123.63 Aligned_cols=111 Identities=21% Similarity=0.198 Sum_probs=96.4
Q ss_pred CCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEE
Q 040109 344 SLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVAL 423 (598)
Q Consensus 344 ~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 423 (598)
+.+.+++++|.++. +|. ...++|++|+|++|+|++..|..|.++++|++|
T Consensus 10 ~~~~l~~s~n~l~~-ip~-----------------------------~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L 59 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPT-----------------------------GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRL 59 (170)
T ss_dssp ETTEEECTTSCCSS-CCS-----------------------------CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred CCCEEEeCCCCcCc-cCc-----------------------------cCCCCCcEEEcCCCcCCccChhhhcCcccCCEE
Confidence 46788888888874 332 113578999999999998889999999999999
Q ss_pred ECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcceecCCC
Q 040109 424 NLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFSGKIPK 484 (598)
Q Consensus 424 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 484 (598)
+|++|++++..+..|..+++|++|+|++|++++..+..|.++++|++|+|++|++.+..+.
T Consensus 60 ~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~ 120 (170)
T 3g39_A 60 DLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSD 120 (170)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred ECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence 9999999977777789999999999999999987777899999999999999999977664
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=2.8e-15 Score=139.58 Aligned_cols=62 Identities=23% Similarity=0.196 Sum_probs=39.7
Q ss_pred cccccceEeccCCcCCCcCc-hhhhcccCCcEEECcCCcCcccCCcc----------cCCCCCCCeeeCCCCccC
Q 040109 392 ILGLIKIIDLSSNKLGGEVP-EEIMDLVGLVALNLSNNNLTGQITPR----------IGQLKSLDFLDLSINHFF 455 (598)
Q Consensus 392 ~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~Ls~N~l~ 455 (598)
.+++|+.|++++|++++..+ ..+..+++|++|++++|.+++.+|.. +..+++|+.|| +|.++
T Consensus 113 ~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 34556666666666653222 36677777888888888777655542 66777888776 55554
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=2.9e-13 Score=122.96 Aligned_cols=107 Identities=21% Similarity=0.207 Sum_probs=70.8
Q ss_pred ceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCC
Q 040109 397 KIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYN 476 (598)
Q Consensus 397 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 476 (598)
+.+++++|+++ .+|..+. ++|+.|+|++|++++..|..|..+++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56677777775 5565543 66777777777777666667777777777777777776555555667777777777777
Q ss_pred cceecCCC-CCccCccCCCccCCCCCCCCCC
Q 040109 477 NFSGKIPK-GTQLQRFGASTYAGNPELCGLP 506 (598)
Q Consensus 477 ~l~~~~p~-~~~~~~l~~~~~~gnp~lC~~~ 506 (598)
++++..+. ...++++..+.+.+||+.|.|+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 77643332 2346666667777777777654
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=2.9e-13 Score=123.30 Aligned_cols=106 Identities=19% Similarity=0.177 Sum_probs=59.5
Q ss_pred CccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcch--hhcCCCCCcEE
Q 040109 240 SLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPK--FLGNMSSLKML 317 (598)
Q Consensus 240 ~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L 317 (598)
+|+.|++++|.+++. +.+..++. |++|++++|.+++..+..+..+++|++|++++|.++.+|. .+..+++|+.|
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~--L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRR--LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL 118 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSS--CCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEE
T ss_pred CCCEEECCCCCCCcc--cccccCCC--CCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEE
Confidence 444555555544432 33444444 5666666666654433444566666666666666666554 56666666666
Q ss_pred EcccCcCccchhh---hhhhcCCCCCCCCCCCEEEccCcccc
Q 040109 318 VLSYNELRGELSE---FIQNVSSGSTKNSSLEWLYLASNEIT 356 (598)
Q Consensus 318 ~Ls~n~l~~~~~~---~l~~l~~g~~~~~~L~~L~Ls~N~l~ 356 (598)
++++|++....+. .+..++ +|+.||+++|...
T Consensus 119 ~l~~N~i~~~~~~~~~~~~~l~-------~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 119 CILRNPVTNKKHYRLYVIYKVP-------QVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSSGGGGSTTHHHHHHHHCT-------TCSEETTEECCHH
T ss_pred EecCCCCCCcHhHHHHHHHHCC-------ccceeCCCcCCHH
Confidence 6666666543222 355555 6666666666554
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.41 E-value=7.4e-12 Score=129.26 Aligned_cols=86 Identities=5% Similarity=-0.067 Sum_probs=57.8
Q ss_pred ccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCC-CCC
Q 040109 391 SILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLR-LLS 469 (598)
Q Consensus 391 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~ 469 (598)
..+++|+.++|. ++++......|.++++|+.++|..| ++..-..+|.++ +|+.+++++|.+....+..|.+++ .++
T Consensus 297 ~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~ 373 (401)
T 4fdw_A 297 EGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDIT 373 (401)
T ss_dssp TTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCC
T ss_pred hCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCcc
Confidence 345566666666 3355455567777888888888554 654556677777 888888888877655556677664 677
Q ss_pred EEeCCCCcce
Q 040109 470 VMDLSYNNFS 479 (598)
Q Consensus 470 ~L~ls~N~l~ 479 (598)
.|.+..+.+.
T Consensus 374 ~l~vp~~~~~ 383 (401)
T 4fdw_A 374 VIRVPAESVE 383 (401)
T ss_dssp EEEECGGGHH
T ss_pred EEEeCHHHHH
Confidence 7777766543
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=8.2e-13 Score=119.92 Aligned_cols=90 Identities=24% Similarity=0.218 Sum_probs=81.8
Q ss_pred cccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeC
Q 040109 394 GLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDL 473 (598)
Q Consensus 394 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 473 (598)
++|+.|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|++++..+..|..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 57999999999999888999999999999999999999766667899999999999999999766667999999999999
Q ss_pred CCCcceecCC
Q 040109 474 SYNNFSGKIP 483 (598)
Q Consensus 474 s~N~l~~~~p 483 (598)
++|++.+..+
T Consensus 113 ~~N~~~c~~~ 122 (174)
T 2r9u_A 113 YNNPWDCECR 122 (174)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCcccccc
Confidence 9999986544
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.39 E-value=1.2e-11 Score=127.61 Aligned_cols=263 Identities=11% Similarity=0.105 Sum_probs=129.4
Q ss_pred CCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCCCCEE
Q 040109 112 QHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSSLRYL 191 (598)
Q Consensus 112 ~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L 191 (598)
..++.+.+..+ ++.. -...|.++ +|+.+.+..+ ++..-..+|.++ +|+.+.+.. .+ .......|.++++|+.+
T Consensus 113 ~~l~~i~ip~~-i~~I-~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l-~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSI-PKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TL-EQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp SSCSEEECCTT-CCEE-CTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TC-CEECSSTTTTCTTCCEE
T ss_pred CCccEEEECCc-cCEe-hHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Cc-cEehHHHhhCcccCCee
Confidence 44555555432 3321 22334442 4666665544 443334445443 455555553 22 22233345555555555
Q ss_pred EcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEE
Q 040109 192 DLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHID 271 (598)
Q Consensus 192 ~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~ 271 (598)
++.+|.++.++. ..|. ..+|+.+.+..+ +..+.. ..|.++.+ |+.++
T Consensus 186 ~l~~n~l~~I~~--~aF~-~~~L~~l~lp~~-l~~I~~---------------------------~aF~~~~~--L~~l~ 232 (401)
T 4fdw_A 186 DLSKTKITKLPA--STFV-YAGIEEVLLPVT-LKEIGS---------------------------QAFLKTSQ--LKTIE 232 (401)
T ss_dssp ECTTSCCSEECT--TTTT-TCCCSEEECCTT-CCEECT---------------------------TTTTTCTT--CCCEE
T ss_pred ecCCCcceEech--hhEe-ecccCEEEeCCc-hheehh---------------------------hHhhCCCC--CCEEe
Confidence 555555554433 2333 345555555422 333333 33334444 44444
Q ss_pred ccCCccccccchhhcCCCCccEEeeccCCCCCcc-hhhcCCCCCcEEEcccCcCc-----cchhhhhhhcCCCCCCCCCC
Q 040109 272 LGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVP-KFLGNMSSLKMLVLSYNELR-----GELSEFIQNVSSGSTKNSSL 345 (598)
Q Consensus 272 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~-----~~~~~~l~~l~~g~~~~~~L 345 (598)
+..+ ++..-..+|.+ .+|+.+.+ .+.++.++ ..|.++++|+.+++.+|.+. ...+..|..+. +|
T Consensus 233 l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~-------~L 302 (401)
T 4fdw_A 233 IPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP-------KL 302 (401)
T ss_dssp CCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT-------TC
T ss_pred cCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc-------cC
Confidence 4432 22222333433 44555555 23344432 34555555555555554443 23334444444 56
Q ss_pred CEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEEC
Q 040109 346 EWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNL 425 (598)
Q Consensus 346 ~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 425 (598)
+.+++.++ ++. ++. ..+..+.+|+.++|.++ ++.....+|.++ +|+.+++
T Consensus 303 ~~l~l~~~-i~~-I~~--------------------------~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l 352 (401)
T 4fdw_A 303 ARFEIPES-IRI-LGQ--------------------------GLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKV 352 (401)
T ss_dssp CEECCCTT-CCE-ECT--------------------------TTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEE
T ss_pred CeEEeCCc-eEE-Ehh--------------------------hhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEE
Confidence 66655532 221 110 12334556666666443 554556677777 8888888
Q ss_pred cCCcCcccCCcccCCCC-CCCeeeCCCCcc
Q 040109 426 SNNNLTGQITPRIGQLK-SLDFLDLSINHF 454 (598)
Q Consensus 426 s~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l 454 (598)
++|.+....+..|.+++ +++.|.+..+.+
T Consensus 353 ~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 353 EGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred cCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 88887765666677763 678888877664
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.34 E-value=8.3e-14 Score=142.48 Aligned_cols=44 Identities=23% Similarity=0.201 Sum_probs=20.6
Q ss_pred CCccEEeeccCCCCC--cchhhcCCCCCcEEEcccCcCccchhhhh
Q 040109 289 ASLRYLGLLSNRLRE--VPKFLGNMSSLKMLVLSYNELRGELSEFI 332 (598)
Q Consensus 289 ~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l 332 (598)
++|++|+|++|.++. +......+++|+.|+|++|.++......+
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L 146 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDL 146 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHH
Confidence 355555555555543 22222233455555666555554433333
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.33 E-value=2.2e-11 Score=125.96 Aligned_cols=311 Identities=10% Similarity=0.019 Sum_probs=166.6
Q ss_pred ccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCC
Q 040109 106 PSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYL 185 (598)
Q Consensus 106 ~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l 185 (598)
.+|.++++|+.+.+..+ ++.. -...|.++++|+.+++..+ ++..-..+|.++.+|+.+.+..+- .......|.++
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I-~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l--~~i~~~aF~~~ 139 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREI-GEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLML--KSIGVEAFKGC 139 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEE-CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTC--CEECTTTTTTC
T ss_pred HHhhCCCCceEEEeCCC-ccCc-chhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCce--eeecceeeecc
Confidence 45777788888888643 5532 3456777888888888654 443445667777777776665442 12222334444
Q ss_pred CCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCcc
Q 040109 186 SSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSN 265 (598)
Q Consensus 186 ~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~ 265 (598)
..++....... ..+.. .+|.++++|+.+.+.++. ......+|... .+|+.+.+..+ ++......+.++..
T Consensus 140 ~~~~~~~~~~~--~~i~~--~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c---~~L~~i~l~~~-~~~I~~~~F~~~~~- 209 (394)
T 4fs7_A 140 DFKEITIPEGV--TVIGD--EAFATCESLEYVSLPDSM-ETLHNGLFSGC---GKLKSIKLPRN-LKIIRDYCFAECIL- 209 (394)
T ss_dssp CCSEEECCTTC--CEECT--TTTTTCTTCCEEECCTTC-CEECTTTTTTC---TTCCBCCCCTT-CCEECTTTTTTCTT-
T ss_pred cccccccCccc--cccch--hhhcccCCCcEEecCCcc-ceeccccccCC---CCceEEEcCCC-ceEeCchhhccccc-
Confidence 43333222222 11111 456666666666665432 22222222222 45555555443 22222333444444
Q ss_pred CccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcc-hhhcCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCC
Q 040109 266 LVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVP-KFLGNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSS 344 (598)
Q Consensus 266 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~ 344 (598)
|+.+.+..+... +.+......+|+.+.+... ++.+. ..+.++..|+.+.+..+.. ......+.... .
T Consensus 210 -L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~-------~ 277 (394)
T 4fs7_A 210 -LENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCS-------G 277 (394)
T ss_dssp -CCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCT-------T
T ss_pred -cceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-eeecccccccc-------c
Confidence 555544433322 1222233345555555432 22222 2445555666666554432 12223333333 4
Q ss_pred CCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEE
Q 040109 345 LEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALN 424 (598)
Q Consensus 345 L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 424 (598)
++.+....+.+.. ..+..+.+|+.+.+.++ +......+|.++++|+.++
T Consensus 278 l~~~~~~~~~i~~------------------------------~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~ 326 (394)
T 4fs7_A 278 LKKVIYGSVIVPE------------------------------KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSID 326 (394)
T ss_dssp CCEEEECSSEECT------------------------------TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEEC
T ss_pred cceeccCceeecc------------------------------ccccccccccccccccc-cceechhhhcCCCCCCEEE
Confidence 5554444332210 12334567777777654 5545556788888888888
Q ss_pred CcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCC
Q 040109 425 LSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYN 476 (598)
Q Consensus 425 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 476 (598)
|.++ ++..-..+|.++++|+.+++..+ ++..-..+|.++++|+.+++..+
T Consensus 327 lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 327 LPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred eCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 8654 66455677888888888888776 65455568888888888887644
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.32 E-value=2.4e-12 Score=130.86 Aligned_cols=107 Identities=19% Similarity=0.173 Sum_probs=76.3
Q ss_pred eEeccCC-cCCCcCchhhhcccCCcEEECcC-CcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCC
Q 040109 398 IIDLSSN-KLGGEVPEEIMDLVGLVALNLSN-NNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSY 475 (598)
Q Consensus 398 ~L~Ls~n-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 475 (598)
.++++++ +++ .+|. +..+++|+.|+|++ |+|++..+..|.++++|+.|+|++|+|++..|..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4577776 677 4666 77777788888875 777766667777778888888888887777777777778888888888
Q ss_pred CcceecCCCCCccCccCCCccCCCCCCCCCC
Q 040109 476 NNFSGKIPKGTQLQRFGASTYAGNPELCGLP 506 (598)
Q Consensus 476 N~l~~~~p~~~~~~~l~~~~~~gnp~lC~~~ 506 (598)
|+|++..|.......+..+.+.+|++.|+|.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLHCSCA 120 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred CccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence 8777443333332336777777788777765
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=1.4e-11 Score=125.13 Aligned_cols=92 Identities=16% Similarity=0.049 Sum_probs=82.1
Q ss_pred ccccccceEeccC-CcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCC
Q 040109 391 SILGLIKIIDLSS-NKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLS 469 (598)
Q Consensus 391 ~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 469 (598)
..+++|+.|+|++ |+|++..+..|.++++|+.|+|++|+|++..|..|.++++|++|+|++|+|++..+..+..++ |+
T Consensus 28 ~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~ 106 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQ 106 (347)
T ss_dssp CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CC
T ss_pred CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ce
Confidence 3456799999996 999988888999999999999999999999999999999999999999999977666777776 99
Q ss_pred EEeCCCCcceecCC
Q 040109 470 VMDLSYNNFSGKIP 483 (598)
Q Consensus 470 ~L~ls~N~l~~~~p 483 (598)
.|+|.+|++.+.+.
T Consensus 107 ~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 107 ELVLSGNPLHCSCA 120 (347)
T ss_dssp EEECCSSCCCCCGG
T ss_pred EEEeeCCCccCCCc
Confidence 99999999986544
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.21 E-value=4.4e-10 Score=116.17 Aligned_cols=322 Identities=14% Similarity=0.075 Sum_probs=211.4
Q ss_pred cEEEEEcCCCCCCCCCCCceecCccccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCC
Q 040109 83 HVLGLDLRALSDSPVDALKGTINPSLLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSR 162 (598)
Q Consensus 83 ~v~~l~l~~~~~~~~~~l~g~l~~~l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 162 (598)
.++++.+.. .++..-..+|.++++|+.+++..+ ++.. -...|..+.+|+.+.+..+ +......+|.++..
T Consensus 72 ~L~~i~lp~-------~i~~I~~~aF~~c~~L~~i~lp~~-l~~I-~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 72 KVTEIKIPS-------TVREIGEFAFENCSKLEIINIPDS-VKMI-GRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF 141 (394)
T ss_dssp TEEEEECCT-------TCCEECTTTTTTCTTCCEECCCTT-CCEE-CTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred CceEEEeCC-------CccCcchhHhhCCCCCcEEEeCCC-ceEc-cchhhcccccchhhcccCc-eeeecceeeecccc
Confidence 467777753 354333467899999999999865 5532 3456888999998887654 44344566777654
Q ss_pred CCEEEccCCCCCCCCCcccccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCcc
Q 040109 163 LQVLDLRFNNLFSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLE 242 (598)
Q Consensus 163 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~ 242 (598)
++........ ......|.++++|+.+.+.++ +..++. ..|.++.+|+.+.+..+ ++.....++... ..|+
T Consensus 142 ~~~~~~~~~~---~i~~~aF~~c~~L~~i~l~~~-~~~I~~--~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~---~~L~ 211 (394)
T 4fs7_A 142 KEITIPEGVT---VIGDEAFATCESLEYVSLPDS-METLHN--GLFSGCGKLKSIKLPRN-LKIIRDYCFAEC---ILLE 211 (394)
T ss_dssp SEEECCTTCC---EECTTTTTTCTTCCEEECCTT-CCEECT--TTTTTCTTCCBCCCCTT-CCEECTTTTTTC---TTCC
T ss_pred cccccCcccc---ccchhhhcccCCCcEEecCCc-cceecc--ccccCCCCceEEEcCCC-ceEeCchhhccc---cccc
Confidence 4443333222 223356888899999998765 333433 67888889998888765 444444333332 6677
Q ss_pred EEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccC
Q 040109 243 VIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYN 322 (598)
Q Consensus 243 ~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n 322 (598)
.+.+..+... +......... ++.+.+... ++......+..+..++.+.+..+...--...+..++.++.+....+
T Consensus 212 ~i~~~~~~~~--i~~~~~~~~~--l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~ 286 (394)
T 4fs7_A 212 NMEFPNSLYY--LGDFALSKTG--VKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSV 286 (394)
T ss_dssp BCCCCTTCCE--ECTTTTTTCC--CCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSS
T ss_pred eeecCCCceE--eehhhcccCC--CceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccCce
Confidence 6666554322 2233333445 788877544 3334445678889999999987654434456788888988887765
Q ss_pred cCccchhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEecc
Q 040109 323 ELRGELSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLS 402 (598)
Q Consensus 323 ~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls 402 (598)
.+. ...+..+. +|+.+.+..+ ++ .++. ..+..+.+|+.+++.
T Consensus 287 ~i~---~~~F~~~~-------~L~~i~l~~~-i~-~I~~--------------------------~aF~~c~~L~~i~lp 328 (394)
T 4fs7_A 287 IVP---EKTFYGCS-------SLTEVKLLDS-VK-FIGE--------------------------EAFESCTSLVSIDLP 328 (394)
T ss_dssp EEC---TTTTTTCT-------TCCEEEECTT-CC-EECT--------------------------TTTTTCTTCCEECCC
T ss_pred eec---cccccccc-------cccccccccc-cc-eech--------------------------hhhcCCCCCCEEEeC
Confidence 432 23444444 8999888765 22 1111 234557788999997
Q ss_pred CCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEE
Q 040109 403 SNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVM 471 (598)
Q Consensus 403 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 471 (598)
++ ++.....+|.++++|+.+++..+ ++..-..+|.++++|+.+++..+ ++ .+..+|.++++|+.+
T Consensus 329 ~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 329 YL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred Cc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 54 66455678999999999999877 76566778999999999999865 32 345678888888764
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.21 E-value=5.3e-12 Score=129.02 Aligned_cols=109 Identities=22% Similarity=0.216 Sum_probs=55.2
Q ss_pred CCccEEEccCCCCCCCcchhhhh-----cCccCccEEEccCCccccc----cchhhcCCCCccEEeeccCCCCC-----c
Q 040109 239 KSLEVIDLSNNYLTNSIYPWLLN-----VSSNLVDHIDLGSNRLHGS----IPVAFGHMASLRYLGLLSNRLRE-----V 304 (598)
Q Consensus 239 ~~L~~L~Ls~n~l~~~~~~~l~~-----~~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~-----l 304 (598)
++|+.|+|++|.++......+.. .+. |++|++++|.++.. ++..+...++|++|+|++|.+++ +
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~--L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L 203 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQ--ITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELL 203 (372)
T ss_dssp HTEEEEECCSSCCCHHHHHHHHHHHHSTTCC--CCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHH
T ss_pred HhccHhhcCCCCCCHHHHHHHHHHHHhcCCc--cceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHH
Confidence 34555555555554332222221 223 55666666655432 23333455666666666666653 2
Q ss_pred chhhcCCCCCcEEEcccCcCccchhhh----hhhcCCCCCCCCCCCEEEccCcccc
Q 040109 305 PKFLGNMSSLKMLVLSYNELRGELSEF----IQNVSSGSTKNSSLEWLYLASNEIT 356 (598)
Q Consensus 305 p~~l~~l~~L~~L~Ls~n~l~~~~~~~----l~~l~~g~~~~~~L~~L~Ls~N~l~ 356 (598)
+..+...++|+.|+|++|.+++..... +...+ +|++|+|++|.++
T Consensus 204 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~-------~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 204 AAQLDRNRQLQELNVAYNGAGDTAALALARAAREHP-------SLELLHLYFNELS 252 (372)
T ss_dssp HHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCS-------SCCEEECTTSSCC
T ss_pred HHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCC-------CCCEEeccCCCCC
Confidence 344555566666666666665433222 22223 5666666666655
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.03 E-value=8.4e-09 Score=106.50 Aligned_cols=316 Identities=11% Similarity=0.061 Sum_probs=176.2
Q ss_pred ccccCCC-CCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCC---CCCCCccccCCCCCCCEEEccCCCCCCCCCccc
Q 040109 106 PSLLKLQ-HLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQ---LAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDW 181 (598)
Q Consensus 106 ~~l~~l~-~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~---l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 181 (598)
.+|.+++ .|+.+.+..+ ++.. -...|.++.+|+.+.+..|. ++..-..+|.++.+|+.+.+..+- .......
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~I-g~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~--~~I~~~a 132 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEI-GSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSV--TEIDSEA 132 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEE-CTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTC--SEECTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEE-hHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCcc--ceehhhh
Confidence 3566664 5888888754 5543 34568888899998887663 554445678888888888776552 2334456
Q ss_pred ccCCCCCCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhh
Q 040109 182 LSYLSSLRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLN 261 (598)
Q Consensus 182 l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 261 (598)
|.++.+|+.+.+..+ +..+.. ..+..+.+|+.+.+..+ ++.....+|.. ..|+.+.+..+-. ......+.+
T Consensus 133 F~~c~~L~~i~lp~~-~~~I~~--~~F~~c~~L~~i~~~~~-~~~I~~~aF~~----~~l~~i~ip~~~~-~i~~~af~~ 203 (394)
T 4gt6_A 133 FHHCEELDTVTIPEG-VTSVAD--GMFSYCYSLHTVTLPDS-VTAIEERAFTG----TALTQIHIPAKVT-RIGTNAFSE 203 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECT--TTTTTCTTCCEEECCTT-CCEECTTTTTT----CCCSEEEECTTCC-EECTTTTTT
T ss_pred hhhhcccccccccce-eeeecc--cceecccccccccccce-eeEeccccccc----cceeEEEECCccc-ccccchhhh
Confidence 788888888888653 333333 56778888888888654 44444333422 5677777664422 122344455
Q ss_pred cCccCccEEEccCCccccccchhh-------------cCCCCccEEeeccCCCCCc-chhhcCCCCCcEEEcccCcCccc
Q 040109 262 VSSNLVDHIDLGSNRLHGSIPVAF-------------GHMASLRYLGLLSNRLREV-PKFLGNMSSLKMLVLSYNELRGE 327 (598)
Q Consensus 262 ~~~~~L~~L~L~~n~l~~~~p~~l-------------~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~~ 327 (598)
+.. ++......+.........+ .....+..+.+. +.++.+ ...|.++++|+.+.+..+.. ..
T Consensus 204 c~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I 279 (394)
T 4gt6_A 204 CFA--LSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVV-SI 279 (394)
T ss_dssp CTT--CCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCC-EE
T ss_pred ccc--cceecccccccccccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEecccccc-ee
Confidence 555 5555544433221100000 111222223222 112222 23677888889888875533 34
Q ss_pred hhhhhhhcCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCC
Q 040109 328 LSEFIQNVSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLG 407 (598)
Q Consensus 328 ~~~~l~~l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 407 (598)
....|.++. +|+.+.+..+ ++ .++. ..+..+.+|+.++|..+ ++
T Consensus 280 ~~~aF~~c~-------~L~~i~l~~~-i~-~I~~--------------------------~aF~~c~~L~~i~lp~~-v~ 323 (394)
T 4gt6_A 280 GTGAFMNCP-------ALQDIEFSSR-IT-ELPE--------------------------SVFAGCISLKSIDIPEG-IT 323 (394)
T ss_dssp CTTTTTTCT-------TCCEEECCTT-CC-EECT--------------------------TTTTTCTTCCEEECCTT-CC
T ss_pred cCccccccc-------ccccccCCCc-cc-ccCc--------------------------eeecCCCCcCEEEeCCc-cc
Confidence 444555555 7888877532 22 1111 22344566777777653 44
Q ss_pred CcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcc
Q 040109 408 GEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNF 478 (598)
Q Consensus 408 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 478 (598)
.....+|.++++|+.+.|..+ ++..-..+|.++++|+.+++.++... -..+..+..|+.+.+..|.+
T Consensus 324 ~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 324 QILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp EECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred EehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 344566777777887777544 55344567777777887777776542 13556667777777665543
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.98 E-value=1e-09 Score=111.15 Aligned_cols=166 Identities=19% Similarity=0.210 Sum_probs=93.7
Q ss_pred cchhhcCCCCccEEeeccCCCCCcchhhcCCCCCcEEEcccCcCccchhhhhh--hcCCCCCCCCCCCEEEccC--cccc
Q 040109 281 IPVAFGHMASLRYLGLLSNRLREVPKFLGNMSSLKMLVLSYNELRGELSEFIQ--NVSSGSTKNSSLEWLYLAS--NEIT 356 (598)
Q Consensus 281 ~p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~g~~~~~~L~~L~Ls~--N~l~ 356 (598)
+...+..+++|+.|++++|.-..++. +. +++|+.|++..|.+.......+. .++ +|+.|+|+. |...
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp-------~L~~L~L~~~~~~~~ 234 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLP-------NLEKLVLYVGVEDYG 234 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCT-------TCCEEEEECBCGGGT
T ss_pred HHHHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCC-------CCcEEEEeccccccc
Confidence 44555677888888887763223443 33 67888888888877655554554 344 888888753 2211
Q ss_pred ccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhh---cccCCcEEECcCCcCccc
Q 040109 357 GTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIM---DLVGLVALNLSNNNLTGQ 433 (598)
Q Consensus 357 ~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~ 433 (598)
+. +.+..+.. . .....+++|+.|+|++|.+.+..+..+. .+++|++|+|+.|.+++.
T Consensus 235 ~~-~~~~~l~~------------------~-l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~ 294 (362)
T 2ra8_A 235 FD-GDMNVFRP------------------L-FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE 294 (362)
T ss_dssp CC-SCGGGTGG------------------G-SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred cc-hhHHHHHH------------------H-HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence 11 00000000 0 0002356778888877777654444443 366777777777777653
Q ss_pred ----CCcccCCCCCCCeeeCCCCccCCCCcccccC-CCCCCEEeCCCCc
Q 040109 434 ----ITPRIGQLKSLDFLDLSINHFFGGIPSSLSR-LRLLSVMDLSYNN 477 (598)
Q Consensus 434 ----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~ls~N~ 477 (598)
++..+..+++|+.|+|++|.++...-..+.. + ...+++++++
T Consensus 295 G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 295 GARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 2333345677777777777765443333332 2 3446666654
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.94 E-value=4.7e-08 Score=100.81 Aligned_cols=297 Identities=10% Similarity=0.089 Sum_probs=186.3
Q ss_pred hhcCCCC-CCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCC--CCCCCcccccCCCCCCEEEcCCCcCCCCCchhHh
Q 040109 131 EFIGSLS-KLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNL--FSSGNLDWLSYLSSLRYLDLGDCKLSKFSNWFQV 207 (598)
Q Consensus 131 ~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l--~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 207 (598)
..|.+++ .|+.+.+..+ ++..-..+|.+|.+|+.+.+..|.- ........|.++.+|+.+.+..+ ++.++. ..
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~--~a 132 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS--EA 132 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT--TT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh--hh
Confidence 3466664 5999999754 6656678899999999999987641 12223456888889988877654 444433 67
Q ss_pred hcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCCcchhhhhcCccCccEEEccCCccccccchhhcC
Q 040109 208 LSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNSIYPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGH 287 (598)
Q Consensus 208 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~ 287 (598)
|..+.+|+.+.+..+ +.......|... ..|+.+.+..+ ++..-...+. ... |+.+.+..+... .....|..
T Consensus 133 F~~c~~L~~i~lp~~-~~~I~~~~F~~c---~~L~~i~~~~~-~~~I~~~aF~-~~~--l~~i~ip~~~~~-i~~~af~~ 203 (394)
T 4gt6_A 133 FHHCEELDTVTIPEG-VTSVADGMFSYC---YSLHTVTLPDS-VTAIEERAFT-GTA--LTQIHIPAKVTR-IGTNAFSE 203 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTC---TTCCEEECCTT-CCEECTTTTT-TCC--CSEEEECTTCCE-ECTTTTTT
T ss_pred hhhhcccccccccce-eeeecccceecc---cccccccccce-eeEecccccc-ccc--eeEEEECCcccc-cccchhhh
Confidence 888899999988643 333333223332 77888888654 3322222332 344 777877654332 34456777
Q ss_pred CCCccEEeeccCCCCCcchhh--------------cCCCCCcEEEcccCcCccchhhhhhhcCCCCCCCCCCCEEEccCc
Q 040109 288 MASLRYLGLLSNRLREVPKFL--------------GNMSSLKMLVLSYNELRGELSEFIQNVSSGSTKNSSLEWLYLASN 353 (598)
Q Consensus 288 l~~L~~L~Ls~n~l~~lp~~l--------------~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~g~~~~~~L~~L~Ls~N 353 (598)
+.+++......+....+...+ .....+..+.+.. .+.......|..+. .|+.+.+..+
T Consensus 204 c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~-------~L~~i~lp~~ 275 (394)
T 4gt6_A 204 CFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCA-------YLASVKMPDS 275 (394)
T ss_dssp CTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCS-------SCCEEECCTT
T ss_pred ccccceecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecc-------cccEEecccc
Confidence 778877776655443322111 1112233333321 12222233344433 6777777654
Q ss_pred cccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCccc
Q 040109 354 EITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQ 433 (598)
Q Consensus 354 ~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 433 (598)
..+ +. ...+..+.+|+.+.+. +.++......|.++.+|+.++|..+ ++..
T Consensus 276 ~~~--I~--------------------------~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I 325 (394)
T 4gt6_A 276 VVS--IG--------------------------TGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQI 325 (394)
T ss_dssp CCE--EC--------------------------TTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEE
T ss_pred cce--ec--------------------------CcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEe
Confidence 332 10 1233456778888886 4455455678889999999999765 6645
Q ss_pred CCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcce
Q 040109 434 ITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFS 479 (598)
Q Consensus 434 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 479 (598)
-..+|.++.+|+.+.+..+ ++..-..+|.+|++|+.+++.+|...
T Consensus 326 ~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~ 370 (394)
T 4gt6_A 326 LDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ 370 (394)
T ss_dssp CTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH
T ss_pred hHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee
Confidence 5678999999999999755 66555678999999999999988543
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.84 E-value=9.7e-10 Score=111.35 Aligned_cols=81 Identities=14% Similarity=0.242 Sum_probs=52.2
Q ss_pred CCccEEEccCCCCCCCcchhhh---hcCccCccEEEccCCccccc----cchhhcCCCCccEEeeccCCCCC-cchhhcC
Q 040109 239 KSLEVIDLSNNYLTNSIYPWLL---NVSSNLVDHIDLGSNRLHGS----IPVAFGHMASLRYLGLLSNRLRE-VPKFLGN 310 (598)
Q Consensus 239 ~~L~~L~Ls~n~l~~~~~~~l~---~~~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~ 310 (598)
++|++|++.+|.+.+..+..+. .++. |+.|+|+.|.+++. ++..+..+++|+.|++++|.+++ .-..+..
T Consensus 252 p~Lr~L~L~~~~i~~~~~~~la~a~~~~~--L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQ--LETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TTCCEEEEESCTTHHHHHHHHHHCSSGGG--CSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCcCEEeCCCCCCchHHHHHHHhCccCCC--CCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 6777777777777644433333 2445 88888888887754 33334556888888888888775 2223332
Q ss_pred -CCCCcEEEcccCc
Q 040109 311 -MSSLKMLVLSYNE 323 (598)
Q Consensus 311 -l~~L~~L~Ls~n~ 323 (598)
+ ...+++++++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 3568888876
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.66 E-value=1.6e-06 Score=88.69 Aligned_cols=81 Identities=9% Similarity=-0.008 Sum_probs=47.2
Q ss_pred ccccceEeccCCcCCCcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEe
Q 040109 393 LGLIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMD 472 (598)
Q Consensus 393 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 472 (598)
+.+|+.+++..+ +.......|.++++|+.+.+.++.++..-..+|.++.+|+.++|..+ ++..-..+|.++++|+.+.
T Consensus 262 ~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 339 (379)
T 4h09_A 262 CTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTIS 339 (379)
T ss_dssp CTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCC
T ss_pred eehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEE
Confidence 344555555432 33233445666677777777666666444556677777777777644 4433345677777777666
Q ss_pred CCC
Q 040109 473 LSY 475 (598)
Q Consensus 473 ls~ 475 (598)
+..
T Consensus 340 ip~ 342 (379)
T 4h09_A 340 YPK 342 (379)
T ss_dssp CCT
T ss_pred ECC
Confidence 543
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.59 E-value=2.4e-06 Score=87.44 Aligned_cols=302 Identities=13% Similarity=0.111 Sum_probs=146.1
Q ss_pred ccCCCCCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCCCCCCCccccCCCCCCCEEEccCCCCCCCCCcccccCCCC
Q 040109 108 LLKLQHLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQLAGPIPHQLGNLSRLQVLDLRFNNLFSSGNLDWLSYLSS 187 (598)
Q Consensus 108 l~~l~~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~ 187 (598)
+....+|+.+.+.. .++.. -...|.++.+|+.++|..+ ++..-..+|.++ +|+.+.+..+ + .......|.+. +
T Consensus 42 ~~~~~~i~~v~ip~-~vt~I-g~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l-~~I~~~aF~~~-~ 114 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSI-GEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-V-KKFGDYVFQGT-D 114 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEE-CTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-C-CEECTTTTTTC-C
T ss_pred cccccCCEEEEeCC-CccCh-HHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-e-eEeccceeccC-C
Confidence 34456677777764 24432 2345777888888888644 554445667666 5777766544 2 22222334443 6
Q ss_pred CCEEEcCCCcCCCCCchhHhhcCCCCCcEEeccCcCCCCCCCChhhhccccCCccEEEccCCCCCCC------------c
Q 040109 188 LRYLDLGDCKLSKFSNWFQVLSNLRSLTTLYLGHCDLPPISTPSLLHLNYSKSLEVIDLSNNYLTNS------------I 255 (598)
Q Consensus 188 L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~------------~ 255 (598)
|+.+.+..+ +..+.. ..|... +|+.+.+..+ ++......+... ..++...+..+..... .
T Consensus 115 L~~i~lp~~-~~~i~~--~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (379)
T 4h09_A 115 LDDFEFPGA-TTEIGN--YIFYNS-SVKRIVIPKS-VTTIKDGIGYKA---ENLEKIEVSSNNKNYVAENYVLYNKNKTI 186 (379)
T ss_dssp CSEEECCTT-CCEECT--TTTTTC-CCCEEEECTT-CCEECSCTTTTC---TTCCEEEECTTCSSEEEETTEEEETTSSE
T ss_pred cccccCCCc-cccccc--cccccc-eeeeeeccce-eeccccchhccc---ccccccccccccceeecccceecccccce
Confidence 777777654 222211 233333 4555444332 222222222221 4555555544332210 0
Q ss_pred chhhhhcCccCccEEEccCCccccccchhhcCCCCccEEeeccCCCCCc-chhhcCCCCCcEEEcccCcCccchhhhhhh
Q 040109 256 YPWLLNVSSNLVDHIDLGSNRLHGSIPVAFGHMASLRYLGLLSNRLREV-PKFLGNMSSLKMLVLSYNELRGELSEFIQN 334 (598)
Q Consensus 256 ~~~l~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~ 334 (598)
...+..... +..+.+.... .......+....+|+.+.+..+ +..+ ...+.++..|+.+.+..+ ++......+..
T Consensus 187 ~~~~~~~~~--~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~ 261 (379)
T 4h09_A 187 LESYPAAKT--GTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQN 261 (379)
T ss_dssp EEECCTTCC--CSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTT
T ss_pred ecccccccc--ccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccce
Confidence 011111111 2222222211 1122233444555555555433 2222 234555566666665543 33333334444
Q ss_pred cCCCCCCCCCCCEEEccCccccccCCCCCCCCcCccccccccceEEEEcCCcccccccccccceEeccCCcCCCcCchhh
Q 040109 335 VSSGSTKNSSLEWLYLASNEITGTIPNLGGFPGMLMPLIYFDKITVTWKGGQYEYKSILGLIKIIDLSSNKLGGEVPEEI 414 (598)
Q Consensus 335 l~~g~~~~~~L~~L~Ls~N~l~~~~p~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l 414 (598)
+. +|+.+.+..+ ++ .++ ...+..+.+|+.+++.++.++......|
T Consensus 262 ~~-------~l~~i~l~~~-i~-~i~--------------------------~~aF~~c~~L~~i~l~~~~i~~I~~~aF 306 (379)
T 4h09_A 262 CT-------ALKTLNFYAK-VK-TVP--------------------------YLLCSGCSNLTKVVMDNSAIETLEPRVF 306 (379)
T ss_dssp CT-------TCCEEEECCC-CS-EEC--------------------------TTTTTTCTTCCEEEECCTTCCEECTTTT
T ss_pred ee-------hhcccccccc-ce-ecc--------------------------ccccccccccccccccccccceehhhhh
Confidence 43 5555555432 11 000 1223456677777777777765555667
Q ss_pred hcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCC
Q 040109 415 MDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLR 466 (598)
Q Consensus 415 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 466 (598)
.++++|+.+.|..+ ++..-..+|.++++|+.+.+..+ ++..-..+|.+++
T Consensus 307 ~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 307 MDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 77777777777644 55344556777777777777544 4433344555543
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.58 E-value=2.8e-08 Score=90.73 Aligned_cols=42 Identities=10% Similarity=0.016 Sum_probs=20.6
Q ss_pred hcCCCCccEEeeccC-CCCC-----cchhhcCCCCCcEEEcccCcCcc
Q 040109 285 FGHMASLRYLGLLSN-RLRE-----VPKFLGNMSSLKMLVLSYNELRG 326 (598)
Q Consensus 285 l~~l~~L~~L~Ls~n-~l~~-----lp~~l~~l~~L~~L~Ls~n~l~~ 326 (598)
+...++|++|+|++| .+.. +...+...++|++|+|++|.+..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~ 79 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND 79 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCCh
Confidence 344455555555555 5543 22334444555555555555543
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.56 E-value=3.1e-08 Score=90.42 Aligned_cols=67 Identities=16% Similarity=0.149 Sum_probs=38.9
Q ss_pred hhhcccCCcEEECcCCcCccc----CCcccCCCCCCCeeeC--CCCccCCC----CcccccCCCCCCEEeCCCCcce
Q 040109 413 EIMDLVGLVALNLSNNNLTGQ----ITPRIGQLKSLDFLDL--SINHFFGG----IPSSLSRLRLLSVMDLSYNNFS 479 (598)
Q Consensus 413 ~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L--s~N~l~~~----~p~~l~~l~~L~~L~ls~N~l~ 479 (598)
.+...++|++|+|++|.|++. +...+...++|++|+| ++|.+... +.+.+...++|++|++++|.+.
T Consensus 88 ~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 88 MLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 344445666666666666543 3344555566777777 66666533 2334455567777777777663
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.38 E-value=2.9e-07 Score=88.41 Aligned_cols=39 Identities=28% Similarity=0.359 Sum_probs=18.2
Q ss_pred ccccceEeccCCcCCC--cCchhhhcccCCcEEECcCCcCc
Q 040109 393 LGLIKIIDLSSNKLGG--EVPEEIMDLVGLVALNLSNNNLT 431 (598)
Q Consensus 393 l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~ 431 (598)
+++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence 3444555555555443 22334444445555555555444
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.31 E-value=1.8e-07 Score=89.86 Aligned_cols=88 Identities=23% Similarity=0.274 Sum_probs=67.0
Q ss_pred ccce--EeccCCcCC---CcCchhhhcccCCcEEECcCCcCcc--cCCcccCCCCCCCeeeCCCCccCCCCcccccCCC-
Q 040109 395 LIKI--IDLSSNKLG---GEVPEEIMDLVGLVALNLSNNNLTG--QITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLR- 466 (598)
Q Consensus 395 ~L~~--L~Ls~n~l~---~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~- 466 (598)
.|.. ++++.|... +.++....++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|++++. ..+..++
T Consensus 142 ~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~ 219 (267)
T 3rw6_A 142 DLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKG 219 (267)
T ss_dssp HHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTT
T ss_pred chhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhccc
Confidence 3444 677777543 2222233578999999999999997 5567778899999999999999865 3344444
Q ss_pred -CCCEEeCCCCcceecCCC
Q 040109 467 -LLSVMDLSYNNFSGKIPK 484 (598)
Q Consensus 467 -~L~~L~ls~N~l~~~~p~ 484 (598)
+|++|+|++|++++.+|.
T Consensus 220 l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 220 LKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp SCCSEEECTTSTTGGGCSS
T ss_pred CCcceEEccCCcCccccCc
Confidence 999999999999987774
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.09 E-value=5.4e-07 Score=80.26 Aligned_cols=83 Identities=18% Similarity=0.093 Sum_probs=70.1
Q ss_pred ccceEeccCCcCCCcCchhhhcccCCcEEECcCCc-CcccCCcccCCC----CCCCeeeCCCCc-cCCCCcccccCCCCC
Q 040109 395 LIKIIDLSSNKLGGEVPEEIMDLVGLVALNLSNNN-LTGQITPRIGQL----KSLDFLDLSINH-FFGGIPSSLSRLRLL 468 (598)
Q Consensus 395 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~L 468 (598)
.|+.||+++|.++..--..+..+++|++|+|++|. +++.--..+..+ ++|++|+|++|. ++..--..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 69999999999987777788899999999999995 887655666665 479999999985 876555678889999
Q ss_pred CEEeCCCCc
Q 040109 469 SVMDLSYNN 477 (598)
Q Consensus 469 ~~L~ls~N~ 477 (598)
++|++++++
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 999999986
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.95 E-value=2.5e-06 Score=75.91 Aligned_cols=83 Identities=13% Similarity=0.164 Sum_probs=39.1
Q ss_pred CCCEEECcCCCCCCCCcchhcCCCCCCCEEECCCCC-CCCCCccccCCC----CCCCEEEccCCCCCCCCCcccccCCCC
Q 040109 113 HLTYLDLSWNNFSGSPIPEFIGSLSKLSELALSSAQ-LAGPIPHQLGNL----SRLQVLDLRFNNLFSSGNLDWLSYLSS 187 (598)
Q Consensus 113 ~L~~L~Ls~n~l~~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l----~~L~~L~Ls~n~l~~~~~~~~l~~l~~ 187 (598)
.|+.||++++.++.. --..+..+++|++|+|++|. ++..--..+..+ ++|++|+|++|.-.+......+..+++
T Consensus 62 ~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 566666666666543 22334556666666666653 443222233332 245555555553112222223344444
Q ss_pred CCEEEcCCC
Q 040109 188 LRYLDLGDC 196 (598)
Q Consensus 188 L~~L~L~~n 196 (598)
|++|++++|
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 444444444
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.43 E-value=9e-05 Score=67.16 Aligned_cols=66 Identities=15% Similarity=0.081 Sum_probs=31.4
Q ss_pred hhhcccCCcEEECcCCcCccc----CCcccCCCCCCCeeeCCCC---ccCC----CCcccccCCCCCCEEeCCCCcc
Q 040109 413 EIMDLVGLVALNLSNNNLTGQ----ITPRIGQLKSLDFLDLSIN---HFFG----GIPSSLSRLRLLSVMDLSYNNF 478 (598)
Q Consensus 413 ~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N---~l~~----~~p~~l~~l~~L~~L~ls~N~l 478 (598)
.+..-+.|++|+|++|.|++. +-+.+..-+.|++|+|++| .+.. .+.+.+..-++|+.|+++.|..
T Consensus 93 aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 93 LIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 334444555555555555432 2223444455666666543 2221 1233444555666666665543
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.30 E-value=0.00018 Score=60.83 Aligned_cols=59 Identities=19% Similarity=0.160 Sum_probs=45.5
Q ss_pred cEEECcCCcCc-ccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCCCcceec
Q 040109 421 VALNLSNNNLT-GQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSYNNFSGK 481 (598)
Q Consensus 421 ~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 481 (598)
..++.+++.++ ..+|..+. ++|++|+|++|+|+..-+..|..+++|+.|+|++|++.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence 47888888886 46676543 4789999999999866667788888898888887777643
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.29 E-value=0.00021 Score=64.76 Aligned_cols=56 Identities=18% Similarity=0.148 Sum_probs=30.0
Q ss_pred ccEEEccCCccccc----cchhhcCCCCccEEeeccCCCCC-----cchhhcCCCCCcEEEcccC
Q 040109 267 VDHIDLGSNRLHGS----IPVAFGHMASLRYLGLLSNRLRE-----VPKFLGNMSSLKMLVLSYN 322 (598)
Q Consensus 267 L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n 322 (598)
|+.|+|++|.+.+. +...+..-+.|++|+|+.|.++. +-..+..-+.|+.|+|++|
T Consensus 72 L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 72 IEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred cCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 55555555555432 22233344556666666666654 3344555566777777654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.03 E-value=0.0012 Score=55.76 Aligned_cols=57 Identities=25% Similarity=0.301 Sum_probs=38.8
Q ss_pred ceEeccCCcCC-CcCchhhhcccCCcEEECcCCcCcccCCcccCCCCCCCeeeCCCCccC
Q 040109 397 KIIDLSSNKLG-GEVPEEIMDLVGLVALNLSNNNLTGQITPRIGQLKSLDFLDLSINHFF 455 (598)
Q Consensus 397 ~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 455 (598)
..++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46777777775 34554332 35778888888887555566777778888888888764
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=39.64 E-value=41 Score=26.04 Aligned_cols=15 Identities=0% Similarity=0.138 Sum_probs=6.7
Q ss_pred cccCCCCCCCEEEcc
Q 040109 155 HQLGNLSRLQVLDLR 169 (598)
Q Consensus 155 ~~l~~l~~L~~L~Ls 169 (598)
..|.+|.+|+.+.+-
T Consensus 14 ~aF~~c~~L~~i~iP 28 (100)
T 2lz0_A 14 SLFAGNTVIREITVQ 28 (100)
T ss_dssp CTTTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcC
Confidence 344444444444443
No 166
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=32.74 E-value=25 Score=21.83 Aligned_cols=19 Identities=26% Similarity=0.502 Sum_probs=8.6
Q ss_pred eehhhHHHHHHHHHHHHhh
Q 040109 542 YMSMILGFFVGFWGVCGTL 560 (598)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~ 560 (598)
+.+++++.++++.++.++.
T Consensus 13 IAGiVvG~v~gv~li~~l~ 31 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGIL 31 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHHHH
Confidence 3445555554444433333
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=31.51 E-value=54 Score=25.32 Aligned_cols=45 Identities=11% Similarity=-0.064 Sum_probs=26.7
Q ss_pred CcccCCcccCCCCCCCeeeCCCCccCCCCcccccCCCCCCEEeCCC
Q 040109 430 LTGQITPRIGQLKSLDFLDLSINHFFGGIPSSLSRLRLLSVMDLSY 475 (598)
Q Consensus 430 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 475 (598)
++..-...|.++++|+.+.|-.+ ++.+-..+|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33334456666667777766654 3334445677777777776654
No 168
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=29.00 E-value=24 Score=20.99 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=13.8
Q ss_pred ehhhHHHHHHHHHHHHhhhhcc
Q 040109 543 MSMILGFFVGFWGVCGTLLVKS 564 (598)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~ 564 (598)
+.+++|.+++|.+....++|.+
T Consensus 10 lt~i~gl~vif~~lg~tflywr 31 (40)
T 2l9u_A 10 LTVIAGLVVIFMMLGGTFLYWR 31 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCceeEEEc
Confidence 4556667767766666666643
No 169
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=23.51 E-value=35 Score=21.97 Aligned_cols=6 Identities=33% Similarity=0.861 Sum_probs=2.5
Q ss_pred ehhhHH
Q 040109 543 MSMILG 548 (598)
Q Consensus 543 ~~~~~~ 548 (598)
.+.++|
T Consensus 15 a~~vVG 20 (44)
T 2jwa_A 15 ISAVVG 20 (44)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 334444
No 170
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=22.93 E-value=48 Score=23.21 Aligned_cols=18 Identities=22% Similarity=0.325 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHHHhhhh
Q 040109 545 MILGFFVGFWGVCGTLLV 562 (598)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~ 562 (598)
+++|.++++++++++.++
T Consensus 12 ivlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 455555555555555554
Done!