Query 040110
Match_columns 348
No_of_seqs 221 out of 2167
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 07:53:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040110.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040110hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.9E-38 6.5E-43 316.4 17.3 243 83-348 129-436 (549)
2 1vt4_I APAF-1 related killer D 100.0 6.6E-33 2.2E-37 285.0 5.9 219 84-330 130-400 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 2.8E-32 9.7E-37 294.2 10.8 232 83-329 125-407 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 6E-29 2E-33 249.8 9.9 231 83-329 125-407 (591)
5 1w5s_A Origin recognition comp 99.2 3.8E-11 1.3E-15 114.4 10.0 149 80-234 20-190 (412)
6 2v1u_A Cell division control p 99.1 6E-10 2E-14 104.9 11.0 143 82-234 19-178 (387)
7 2qby_B CDC6 homolog 3, cell di 99.0 1.7E-10 6E-15 108.8 6.5 146 82-234 20-175 (384)
8 2qby_A CDC6 homolog 1, cell di 99.0 2.9E-10 9.8E-15 107.0 8.0 146 80-235 18-175 (386)
9 2qen_A Walker-type ATPase; unk 99.0 2.4E-10 8.1E-15 106.2 6.8 134 83-235 13-176 (350)
10 1fnn_A CDC6P, cell division co 99.0 2.3E-09 8E-14 101.0 12.9 147 81-235 16-171 (389)
11 2fna_A Conserved hypothetical 99.0 1.2E-09 4.2E-14 101.5 9.9 135 82-235 13-182 (357)
12 1njg_A DNA polymerase III subu 98.9 1.1E-08 3.7E-13 89.2 11.3 204 83-322 24-244 (250)
13 2chg_A Replication factor C sm 98.8 2.6E-08 8.9E-13 85.7 9.2 123 83-234 18-143 (226)
14 1sxj_B Activator 1 37 kDa subu 98.5 1E-07 3.6E-12 87.3 5.6 121 83-233 22-147 (323)
15 1jbk_A CLPB protein; beta barr 98.5 1.2E-07 4.2E-12 79.5 5.2 44 83-135 23-66 (195)
16 3te6_A Regulatory protein SIR3 98.4 4.6E-07 1.6E-11 83.3 8.3 116 83-207 21-144 (318)
17 1iqp_A RFCS; clamp loader, ext 98.2 3.8E-07 1.3E-11 83.6 3.2 122 83-234 26-151 (327)
18 2p65_A Hypothetical protein PF 98.2 6.8E-07 2.3E-11 74.6 3.7 44 83-135 23-66 (187)
19 2chq_A Replication factor C sm 98.1 3.7E-06 1.3E-10 76.7 6.6 120 83-234 18-143 (319)
20 3h4m_A Proteasome-activating n 98.1 6.9E-06 2.4E-10 73.9 8.1 50 83-135 18-74 (285)
21 3n70_A Transport activator; si 98.0 7.1E-06 2.4E-10 66.4 6.1 46 83-135 2-47 (145)
22 3syl_A Protein CBBX; photosynt 98.0 3.4E-06 1.2E-10 76.8 3.8 50 83-135 32-90 (309)
23 2qz4_A Paraplegin; AAA+, SPG7, 98.0 1.5E-05 5E-10 70.7 7.8 50 83-135 7-62 (262)
24 1jr3_A DNA polymerase III subu 98.0 1.4E-05 4.7E-10 74.6 7.7 45 83-135 17-61 (373)
25 3ec2_A DNA replication protein 97.9 6E-06 2E-10 69.2 4.2 101 112-233 38-143 (180)
26 1sxj_D Activator 1 41 kDa subu 97.9 2.4E-05 8.2E-10 72.4 7.5 44 83-135 38-81 (353)
27 2w58_A DNAI, primosome compone 97.9 1E-05 3.5E-10 69.0 4.3 72 113-206 55-126 (202)
28 3eie_A Vacuolar protein sortin 97.8 3.6E-05 1.2E-09 70.8 8.2 50 83-135 19-74 (322)
29 3u61_B DNA polymerase accessor 97.8 2.9E-05 9.9E-10 71.3 7.5 118 83-234 27-147 (324)
30 1sxj_E Activator 1 40 kDa subu 97.8 0.0001 3.4E-09 68.4 10.4 44 83-135 15-59 (354)
31 1xwi_A SKD1 protein; VPS4B, AA 97.8 0.0002 6.9E-09 65.8 12.2 50 83-135 13-68 (322)
32 3b9p_A CG5977-PA, isoform A; A 97.8 0.00014 4.8E-09 65.7 10.6 50 83-135 22-77 (297)
33 1d2n_A N-ethylmaleimide-sensit 97.7 3.2E-05 1.1E-09 69.2 5.8 47 83-135 34-87 (272)
34 3d8b_A Fidgetin-like protein 1 97.7 4.3E-05 1.5E-09 71.4 6.8 50 83-135 85-140 (357)
35 3uk6_A RUVB-like 2; hexameric 97.7 7.9E-05 2.7E-09 69.4 8.6 49 83-135 45-93 (368)
36 3vfd_A Spastin; ATPase, microt 97.7 0.00013 4.5E-09 68.8 10.1 50 83-135 116-171 (389)
37 3co5_A Putative two-component 97.7 1.4E-05 4.6E-10 64.6 2.2 46 83-135 5-50 (143)
38 2qp9_X Vacuolar protein sortin 97.6 0.00017 5.8E-09 67.3 9.1 50 83-135 52-107 (355)
39 2z4s_A Chromosomal replication 97.6 5.7E-05 1.9E-09 72.6 6.0 100 112-232 130-236 (440)
40 1lv7_A FTSH; alpha/beta domain 97.6 0.00012 4.2E-09 64.7 7.3 53 83-135 13-68 (257)
41 2cvh_A DNA repair and recombin 97.6 0.00019 6.6E-09 61.5 8.3 89 112-206 20-116 (220)
42 3bos_A Putative DNA replicatio 97.6 1.4E-05 4.7E-10 69.6 1.0 61 83-151 29-89 (242)
43 1hqc_A RUVB; extended AAA-ATPa 97.6 3.8E-05 1.3E-09 70.3 4.0 49 83-135 13-61 (324)
44 2zan_A Vacuolar protein sortin 97.5 0.00023 7.7E-09 68.5 8.8 50 83-135 135-190 (444)
45 3cf0_A Transitional endoplasmi 97.5 0.00028 9.5E-09 64.1 9.0 50 83-135 16-72 (301)
46 3pfi_A Holliday junction ATP-d 97.5 0.00013 4.3E-09 67.3 6.7 49 83-135 30-78 (338)
47 1l8q_A Chromosomal replication 97.5 0.00012 4.1E-09 67.1 6.1 99 112-232 37-140 (324)
48 2gno_A DNA polymerase III, gam 97.4 0.00048 1.7E-08 62.8 9.3 112 95-233 7-122 (305)
49 1sxj_A Activator 1 95 kDa subu 97.4 0.0002 6.7E-09 70.3 7.1 50 83-135 40-100 (516)
50 1sxj_C Activator 1 40 kDa subu 97.4 0.00019 6.4E-09 66.4 6.4 44 83-135 26-69 (340)
51 3t15_A Ribulose bisphosphate c 97.4 0.00045 1.5E-08 62.6 8.7 26 110-135 34-59 (293)
52 3pxg_A Negative regulator of g 97.4 0.00017 5.8E-09 69.9 5.7 44 83-135 181-224 (468)
53 2kjq_A DNAA-related protein; s 97.4 0.00045 1.5E-08 56.0 7.3 36 95-136 25-60 (149)
54 2bjv_A PSP operon transcriptio 97.4 0.0002 7E-09 63.6 5.7 46 83-135 7-52 (265)
55 3pvs_A Replication-associated 97.3 8.2E-05 2.8E-09 71.6 3.0 47 83-135 27-73 (447)
56 1qvr_A CLPB protein; coiled co 97.3 0.00015 5.2E-09 75.4 5.1 44 83-135 171-214 (854)
57 4fcw_A Chaperone protein CLPB; 97.3 8.8E-05 3E-09 67.4 2.8 50 83-135 18-70 (311)
58 3hu3_A Transitional endoplasmi 97.3 0.0002 6.9E-09 69.6 5.4 50 83-135 205-261 (489)
59 2ce7_A Cell division protein F 97.3 0.00039 1.3E-08 67.3 7.4 53 83-135 17-72 (476)
60 1r6b_X CLPA protein; AAA+, N-t 97.3 0.00093 3.2E-08 68.5 10.6 44 83-135 187-230 (758)
61 1a5t_A Delta prime, HOLB; zinc 97.3 0.0015 5.2E-08 60.1 10.8 40 194-233 107-148 (334)
62 4b4t_L 26S protease subunit RP 97.3 0.00081 2.8E-08 64.2 8.9 50 83-135 182-238 (437)
63 2vhj_A Ntpase P4, P4; non- hyd 97.2 0.00034 1.2E-08 64.0 5.9 69 112-206 123-193 (331)
64 3pxi_A Negative regulator of g 97.1 0.00043 1.5E-08 71.1 6.2 44 83-135 181-224 (758)
65 2r62_A Cell division protease 97.1 7.5E-05 2.6E-09 66.4 0.3 50 83-135 12-67 (268)
66 1ojl_A Transcriptional regulat 97.1 0.00027 9.2E-09 64.4 3.4 46 83-135 3-48 (304)
67 3hr8_A Protein RECA; alpha and 97.1 0.0015 5.1E-08 60.8 8.5 89 111-206 60-150 (356)
68 2w0m_A SSO2452; RECA, SSPF, un 97.1 0.0018 6.1E-08 55.6 8.5 116 113-233 24-168 (235)
69 2xxa_A Signal recognition part 97.0 0.017 5.9E-07 55.1 15.6 41 95-135 80-123 (433)
70 4b4t_J 26S protease regulatory 97.0 0.00068 2.3E-08 63.9 5.2 50 83-135 149-205 (405)
71 2z43_A DNA repair and recombin 96.9 0.004 1.4E-07 57.1 9.9 95 111-206 106-214 (324)
72 1v5w_A DMC1, meiotic recombina 96.9 0.0076 2.6E-07 55.7 11.9 96 110-206 120-230 (343)
73 2c9o_A RUVB-like 1; hexameric 96.9 0.00078 2.7E-08 64.9 5.0 50 82-135 37-86 (456)
74 1n0w_A DNA repair protein RAD5 96.9 0.0033 1.1E-07 54.4 8.7 94 112-206 24-130 (243)
75 2px0_A Flagellar biosynthesis 96.8 0.004 1.4E-07 56.4 9.2 86 111-203 104-190 (296)
76 1xp8_A RECA protein, recombina 96.8 0.0032 1.1E-07 58.8 8.6 87 112-205 74-162 (366)
77 4b4t_K 26S protease regulatory 96.8 0.0011 3.8E-08 63.1 5.4 50 83-135 173-229 (428)
78 3cf2_A TER ATPase, transitiona 96.8 0.0014 4.8E-08 67.2 6.0 97 83-206 205-308 (806)
79 1ypw_A Transitional endoplasmi 96.8 0.00083 2.8E-08 69.4 4.4 50 83-135 205-261 (806)
80 4b4t_H 26S protease regulatory 96.8 0.0013 4.4E-08 63.0 5.3 50 83-135 210-266 (467)
81 2i1q_A DNA repair and recombin 96.8 0.0062 2.1E-07 55.6 9.8 94 111-205 97-214 (322)
82 2zr9_A Protein RECA, recombina 96.8 0.0037 1.3E-07 58.0 8.3 89 111-206 60-150 (349)
83 3pxi_A Negative regulator of g 96.7 0.002 6.7E-08 66.1 6.5 50 83-135 492-544 (758)
84 2dhr_A FTSH; AAA+ protein, hex 96.7 0.0075 2.6E-07 58.6 10.0 53 83-135 32-87 (499)
85 2b8t_A Thymidine kinase; deoxy 96.7 0.00079 2.7E-08 58.5 2.8 114 111-234 11-127 (223)
86 3c8u_A Fructokinase; YP_612366 96.6 0.0018 6.3E-08 55.2 5.1 37 95-135 9-45 (208)
87 3io5_A Recombination and repai 96.6 0.0052 1.8E-07 56.0 8.1 86 114-206 30-122 (333)
88 4b4t_M 26S protease regulatory 96.6 0.0015 5.2E-08 62.3 4.8 50 83-135 182-238 (434)
89 1j8m_F SRP54, signal recogniti 96.6 0.033 1.1E-06 50.3 13.2 90 112-204 98-189 (297)
90 3kl4_A SRP54, signal recogniti 96.6 0.032 1.1E-06 53.1 13.4 25 111-135 96-120 (433)
91 1u94_A RECA protein, recombina 96.6 0.006 2.1E-07 56.7 8.2 88 111-205 62-151 (356)
92 2qgz_A Helicase loader, putati 96.4 0.0012 4.1E-08 60.2 2.7 24 112-135 152-175 (308)
93 2x8a_A Nuclear valosin-contain 96.4 0.0048 1.7E-07 55.1 6.5 21 115-135 47-67 (274)
94 3e70_C DPA, signal recognition 96.4 0.04 1.4E-06 50.5 12.7 26 110-135 127-152 (328)
95 3dm5_A SRP54, signal recogniti 96.4 0.013 4.5E-07 55.9 9.5 25 111-135 99-123 (443)
96 1cr0_A DNA primase/helicase; R 96.4 0.011 3.6E-07 53.3 8.5 23 113-135 36-58 (296)
97 1qvr_A CLPB protein; coiled co 96.4 0.0025 8.6E-08 66.2 4.8 50 83-135 559-611 (854)
98 1qhx_A CPT, protein (chloramph 96.3 0.0018 6.3E-08 53.4 3.0 23 113-135 4-26 (178)
99 3kb2_A SPBC2 prophage-derived 96.3 0.0019 6.5E-08 52.8 3.1 23 113-135 2-24 (173)
100 2pjz_A Hypothetical protein ST 96.3 0.06 2.1E-06 47.7 13.1 23 113-135 31-53 (263)
101 1rz3_A Hypothetical protein rb 96.3 0.0018 6.3E-08 54.9 3.0 38 95-135 8-45 (201)
102 1vma_A Cell division protein F 96.3 0.011 3.7E-07 53.7 8.2 107 95-205 85-196 (306)
103 3lw7_A Adenylate kinase relate 96.3 0.0022 7.5E-08 52.3 3.2 20 113-132 2-21 (179)
104 1ly1_A Polynucleotide kinase; 96.2 0.0028 9.7E-08 52.2 3.6 22 113-134 3-24 (181)
105 1odf_A YGR205W, hypothetical 3 96.2 0.0044 1.5E-07 56.0 4.9 27 109-135 28-54 (290)
106 1zp6_A Hypothetical protein AT 96.2 0.0032 1.1E-07 52.5 3.7 24 112-135 9-32 (191)
107 3vaa_A Shikimate kinase, SK; s 96.2 0.0029 1E-07 53.5 3.4 24 112-135 25-48 (199)
108 4b4t_I 26S protease regulatory 96.1 0.0065 2.2E-07 57.6 5.9 50 83-135 183-239 (437)
109 3bh0_A DNAB-like replicative h 96.1 0.021 7.3E-07 51.9 9.2 49 113-165 69-117 (315)
110 1kgd_A CASK, peripheral plasma 96.1 0.003 1E-07 52.5 3.1 23 113-135 6-28 (180)
111 2ffh_A Protein (FFH); SRP54, s 96.1 0.021 7.2E-07 54.3 9.1 25 111-135 97-121 (425)
112 3uie_A Adenylyl-sulfate kinase 96.0 0.0041 1.4E-07 52.6 3.8 25 111-135 24-48 (200)
113 1kag_A SKI, shikimate kinase I 96.0 0.0029 9.8E-08 51.9 2.7 23 113-135 5-27 (173)
114 3lda_A DNA repair protein RAD5 96.0 0.034 1.2E-06 52.5 10.4 95 111-206 177-284 (400)
115 1knq_A Gluconate kinase; ALFA/ 96.0 0.0051 1.8E-07 50.6 4.2 25 111-135 7-31 (175)
116 1pzn_A RAD51, DNA repair and r 96.0 0.018 6.3E-07 53.2 8.4 97 110-207 129-243 (349)
117 1in4_A RUVB, holliday junction 96.0 0.0017 5.8E-08 59.8 1.2 49 83-135 26-74 (334)
118 3m6a_A ATP-dependent protease 96.0 0.011 3.7E-07 58.2 7.1 50 83-135 82-131 (543)
119 3jvv_A Twitching mobility prot 96.0 0.0024 8.1E-08 59.5 2.2 112 112-238 123-236 (356)
120 3trf_A Shikimate kinase, SK; a 96.0 0.0038 1.3E-07 51.9 3.2 24 112-135 5-28 (185)
121 1fx0_B ATP synthase beta chain 96.0 0.017 5.9E-07 55.6 8.1 90 114-205 167-276 (498)
122 3hws_A ATP-dependent CLP prote 96.0 0.0034 1.2E-07 58.3 3.1 50 83-135 16-74 (363)
123 1uf9_A TT1252 protein; P-loop, 95.9 0.0047 1.6E-07 51.9 3.7 26 110-135 6-31 (203)
124 1nks_A Adenylate kinase; therm 95.9 0.0041 1.4E-07 51.7 3.3 23 113-135 2-24 (194)
125 1ofh_A ATP-dependent HSL prote 95.9 0.0023 7.7E-08 57.7 1.7 50 83-135 16-73 (310)
126 2rhm_A Putative kinase; P-loop 95.9 0.0053 1.8E-07 51.2 3.8 25 111-135 4-28 (193)
127 3t61_A Gluconokinase; PSI-biol 95.9 0.0033 1.1E-07 53.1 2.5 24 112-135 18-41 (202)
128 1uj2_A Uridine-cytidine kinase 95.9 0.005 1.7E-07 54.2 3.7 27 109-135 19-45 (252)
129 3tr0_A Guanylate kinase, GMP k 95.9 0.0046 1.6E-07 52.1 3.3 23 113-135 8-30 (205)
130 4eun_A Thermoresistant glucoki 95.8 0.0049 1.7E-07 52.1 3.4 25 111-135 28-52 (200)
131 1ukz_A Uridylate kinase; trans 95.8 0.0063 2.2E-07 51.3 4.0 27 109-135 12-38 (203)
132 3asz_A Uridine kinase; cytidin 95.8 0.005 1.7E-07 52.3 3.4 25 111-135 5-29 (211)
133 3tau_A Guanylate kinase, GMP k 95.8 0.0056 1.9E-07 52.2 3.7 24 112-135 8-31 (208)
134 4a1f_A DNAB helicase, replicat 95.8 0.023 7.9E-07 52.3 8.0 89 113-205 47-166 (338)
135 1kht_A Adenylate kinase; phosp 95.8 0.0053 1.8E-07 51.0 3.3 23 113-135 4-26 (192)
136 1tev_A UMP-CMP kinase; ploop, 95.8 0.006 2.1E-07 50.8 3.6 24 112-135 3-26 (196)
137 4gp7_A Metallophosphoesterase; 95.7 0.0056 1.9E-07 50.5 3.3 22 112-133 9-30 (171)
138 2ck3_D ATP synthase subunit be 95.7 0.049 1.7E-06 52.2 10.1 65 96-166 142-207 (482)
139 2qt1_A Nicotinamide riboside k 95.7 0.0063 2.2E-07 51.6 3.6 26 110-135 19-44 (207)
140 2j41_A Guanylate kinase; GMP, 95.7 0.006 2.1E-07 51.4 3.5 23 113-135 7-29 (207)
141 3fwy_A Light-independent proto 95.7 0.0062 2.1E-07 55.6 3.7 26 110-135 46-71 (314)
142 1zuh_A Shikimate kinase; alpha 95.7 0.0056 1.9E-07 50.0 3.2 25 111-135 6-30 (168)
143 2ze6_A Isopentenyl transferase 95.7 0.0061 2.1E-07 53.8 3.6 23 113-135 2-24 (253)
144 1cke_A CK, MSSA, protein (cyti 95.7 0.0056 1.9E-07 52.5 3.3 23 113-135 6-28 (227)
145 2bdt_A BH3686; alpha-beta prot 95.7 0.0062 2.1E-07 50.8 3.4 22 113-134 3-24 (189)
146 2dr3_A UPF0273 protein PH0284; 95.7 0.036 1.2E-06 47.8 8.5 90 112-206 23-139 (247)
147 2jaq_A Deoxyguanosine kinase; 95.7 0.0059 2E-07 51.3 3.3 22 114-135 2-23 (205)
148 2if2_A Dephospho-COA kinase; a 95.7 0.0052 1.8E-07 51.9 2.9 22 113-134 2-23 (204)
149 3iij_A Coilin-interacting nucl 95.7 0.0051 1.7E-07 50.9 2.7 24 112-135 11-34 (180)
150 3a00_A Guanylate kinase, GMP k 95.7 0.005 1.7E-07 51.4 2.7 23 113-135 2-24 (186)
151 1jjv_A Dephospho-COA kinase; P 95.7 0.0068 2.3E-07 51.3 3.5 22 113-134 3-24 (206)
152 2cdn_A Adenylate kinase; phosp 95.7 0.0075 2.6E-07 50.9 3.8 25 111-135 19-43 (201)
153 2qor_A Guanylate kinase; phosp 95.7 0.0055 1.9E-07 51.9 3.0 25 111-135 11-35 (204)
154 1sky_E F1-ATPase, F1-ATP synth 95.7 0.015 5.1E-07 55.8 6.2 50 114-165 153-204 (473)
155 1y63_A LMAJ004144AAA protein; 95.6 0.0075 2.6E-07 50.2 3.7 24 112-135 10-33 (184)
156 2c95_A Adenylate kinase 1; tra 95.6 0.0063 2.2E-07 50.8 3.2 24 112-135 9-32 (196)
157 2orw_A Thymidine kinase; TMTK, 95.6 0.00096 3.3E-08 56.1 -2.1 23 113-135 4-26 (184)
158 3cm0_A Adenylate kinase; ATP-b 95.6 0.0077 2.6E-07 49.9 3.5 23 113-135 5-27 (186)
159 1ye8_A Protein THEP1, hypothet 95.5 0.0073 2.5E-07 50.3 3.3 22 114-135 2-23 (178)
160 3a4m_A L-seryl-tRNA(SEC) kinas 95.5 0.0081 2.8E-07 53.1 3.7 24 112-135 4-27 (260)
161 1ls1_A Signal recognition part 95.5 0.046 1.6E-06 49.3 8.8 90 111-204 97-189 (295)
162 1gvn_B Zeta; postsegregational 95.5 0.01 3.6E-07 53.3 4.4 26 110-135 31-56 (287)
163 2j37_W Signal recognition part 95.5 0.071 2.4E-06 51.8 10.6 26 110-135 99-124 (504)
164 2plr_A DTMP kinase, probable t 95.5 0.0087 3E-07 50.5 3.7 23 113-135 5-27 (213)
165 2grj_A Dephospho-COA kinase; T 95.5 0.0082 2.8E-07 50.7 3.5 26 110-135 10-35 (192)
166 2yvu_A Probable adenylyl-sulfa 95.5 0.011 3.8E-07 49.1 4.3 25 111-135 12-36 (186)
167 1ex7_A Guanylate kinase; subst 95.5 0.0052 1.8E-07 51.6 2.2 22 114-135 3-24 (186)
168 1e6c_A Shikimate kinase; phosp 95.5 0.0063 2.2E-07 49.8 2.7 23 113-135 3-25 (173)
169 1g5t_A COB(I)alamin adenosyltr 95.5 0.0068 2.3E-07 51.3 2.8 51 184-234 108-164 (196)
170 1qf9_A UMP/CMP kinase, protein 95.5 0.0097 3.3E-07 49.4 3.8 24 112-135 6-29 (194)
171 2iyv_A Shikimate kinase, SK; t 95.5 0.0055 1.9E-07 50.8 2.3 22 114-135 4-25 (184)
172 1lvg_A Guanylate kinase, GMP k 95.5 0.0061 2.1E-07 51.6 2.6 23 113-135 5-27 (198)
173 2bbw_A Adenylate kinase 4, AK4 95.5 0.0081 2.8E-07 52.5 3.4 24 112-135 27-50 (246)
174 1via_A Shikimate kinase; struc 95.5 0.0074 2.5E-07 49.7 3.0 22 114-135 6-27 (175)
175 2bwj_A Adenylate kinase 5; pho 95.4 0.0073 2.5E-07 50.5 2.9 23 113-135 13-35 (199)
176 3tqc_A Pantothenate kinase; bi 95.4 0.012 4.3E-07 53.7 4.6 27 109-135 89-115 (321)
177 3umf_A Adenylate kinase; rossm 95.4 0.012 4.1E-07 50.7 4.2 27 109-135 26-52 (217)
178 2jeo_A Uridine-cytidine kinase 95.4 0.01 3.4E-07 51.9 3.8 25 111-135 24-48 (245)
179 1xjc_A MOBB protein homolog; s 95.4 0.0088 3E-07 49.4 3.2 25 111-135 3-27 (169)
180 3nbx_X ATPase RAVA; AAA+ ATPas 95.4 0.0055 1.9E-07 59.6 2.3 43 83-136 23-65 (500)
181 2pt5_A Shikimate kinase, SK; a 95.4 0.009 3.1E-07 48.6 3.3 22 114-135 2-23 (168)
182 2r44_A Uncharacterized protein 95.4 0.0034 1.2E-07 57.4 0.6 42 83-135 28-69 (331)
183 2pbr_A DTMP kinase, thymidylat 95.4 0.0089 3.1E-07 49.7 3.2 22 114-135 2-23 (195)
184 1aky_A Adenylate kinase; ATP:A 95.4 0.0093 3.2E-07 51.1 3.4 24 112-135 4-27 (220)
185 3aez_A Pantothenate kinase; tr 95.4 0.011 3.7E-07 53.9 4.0 26 110-135 88-113 (312)
186 2z0h_A DTMP kinase, thymidylat 95.3 0.017 5.9E-07 48.1 4.9 22 114-135 2-23 (197)
187 2vli_A Antibiotic resistance p 95.3 0.006 2.1E-07 50.4 2.0 24 112-135 5-28 (183)
188 1znw_A Guanylate kinase, GMP k 95.3 0.0094 3.2E-07 50.6 3.3 23 113-135 21-43 (207)
189 2p5t_B PEZT; postsegregational 95.3 0.011 3.6E-07 52.1 3.7 27 109-135 29-55 (253)
190 3ice_A Transcription terminati 95.3 0.015 5E-07 54.5 4.7 40 114-154 176-216 (422)
191 2pez_A Bifunctional 3'-phospho 95.3 0.012 4E-07 48.6 3.7 24 112-135 5-28 (179)
192 4a74_A DNA repair and recombin 95.3 0.031 1.1E-06 47.7 6.5 57 111-168 24-84 (231)
193 3ney_A 55 kDa erythrocyte memb 95.2 0.01 3.5E-07 50.3 3.1 25 111-135 18-42 (197)
194 2wwf_A Thymidilate kinase, put 95.2 0.012 4E-07 49.9 3.5 24 112-135 10-33 (212)
195 1nn5_A Similar to deoxythymidy 95.2 0.01 3.6E-07 50.2 3.2 24 112-135 9-32 (215)
196 2f6r_A COA synthase, bifunctio 95.2 0.012 4.2E-07 52.6 3.8 25 110-134 73-97 (281)
197 4e22_A Cytidylate kinase; P-lo 95.2 0.012 4.1E-07 51.8 3.6 24 112-135 27-50 (252)
198 2v54_A DTMP kinase, thymidylat 95.2 0.012 4.2E-07 49.4 3.5 23 113-135 5-27 (204)
199 1g8p_A Magnesium-chelatase 38 95.2 0.0046 1.6E-07 56.8 0.8 44 83-135 25-68 (350)
200 1z6g_A Guanylate kinase; struc 95.1 0.0087 3E-07 51.5 2.5 23 113-135 24-46 (218)
201 1vht_A Dephospho-COA kinase; s 95.1 0.015 5E-07 49.7 3.9 23 112-134 4-26 (218)
202 1zd8_A GTP:AMP phosphotransfer 95.1 0.011 3.6E-07 51.0 2.9 24 112-135 7-30 (227)
203 3fb4_A Adenylate kinase; psych 95.1 0.012 4E-07 50.1 3.2 22 114-135 2-23 (216)
204 1rj9_A FTSY, signal recognitio 95.1 0.014 4.9E-07 52.9 3.8 25 111-135 101-125 (304)
205 2ged_A SR-beta, signal recogni 95.1 0.021 7.2E-07 47.3 4.6 26 110-135 46-71 (193)
206 3tlx_A Adenylate kinase 2; str 95.0 0.015 5.2E-07 50.8 3.8 25 111-135 28-52 (243)
207 1ixz_A ATP-dependent metallopr 95.0 0.011 3.9E-07 51.7 3.0 21 115-135 52-72 (254)
208 1s96_A Guanylate kinase, GMP k 95.0 0.013 4.4E-07 50.6 3.2 24 112-135 16-39 (219)
209 3dl0_A Adenylate kinase; phosp 95.0 0.013 4.5E-07 49.9 3.2 22 114-135 2-23 (216)
210 1htw_A HI0065; nucleotide-bind 95.0 0.016 5.6E-07 47.2 3.5 24 112-135 33-56 (158)
211 2yhs_A FTSY, cell division pro 94.9 0.076 2.6E-06 51.3 8.6 26 110-135 291-316 (503)
212 1zak_A Adenylate kinase; ATP:A 94.9 0.011 3.8E-07 50.6 2.6 24 112-135 5-28 (222)
213 2ehv_A Hypothetical protein PH 94.9 0.014 4.9E-07 50.5 3.3 23 112-134 30-52 (251)
214 1um8_A ATP-dependent CLP prote 94.9 0.012 4.1E-07 54.9 3.0 23 113-135 73-95 (376)
215 1gtv_A TMK, thymidylate kinase 94.9 0.0065 2.2E-07 51.5 1.0 22 114-135 2-23 (214)
216 1m7g_A Adenylylsulfate kinase; 94.9 0.017 6E-07 49.1 3.7 24 112-135 25-48 (211)
217 1sq5_A Pantothenate kinase; P- 94.8 0.018 6.2E-07 52.3 3.9 26 110-135 78-103 (308)
218 3ake_A Cytidylate kinase; CMP 94.8 0.016 5.5E-07 48.8 3.2 22 114-135 4-25 (208)
219 3lnc_A Guanylate kinase, GMP k 94.7 0.01 3.6E-07 51.2 1.9 23 113-135 28-51 (231)
220 2f1r_A Molybdopterin-guanine d 94.7 0.0091 3.1E-07 49.4 1.4 23 113-135 3-25 (171)
221 3be4_A Adenylate kinase; malar 94.7 0.013 4.6E-07 50.1 2.5 23 113-135 6-28 (217)
222 3tif_A Uncharacterized ABC tra 94.7 0.017 5.7E-07 50.4 3.1 23 113-135 32-54 (235)
223 2onk_A Molybdate/tungstate ABC 94.7 0.018 6.2E-07 50.4 3.3 23 113-135 25-47 (240)
224 1q57_A DNA primase/helicase; d 94.7 0.14 4.6E-06 49.7 9.9 51 112-165 242-292 (503)
225 2q6t_A DNAB replication FORK h 94.7 0.13 4.6E-06 48.9 9.8 50 113-165 201-250 (444)
226 1iy2_A ATP-dependent metallopr 94.7 0.016 5.6E-07 51.5 3.0 52 83-135 41-96 (278)
227 3cmu_A Protein RECA, recombina 94.6 0.053 1.8E-06 60.6 7.4 88 111-205 1426-1515(2050)
228 2ga8_A Hypothetical 39.9 kDa p 94.6 0.016 5.3E-07 53.7 2.8 25 111-135 23-47 (359)
229 3llm_A ATP-dependent RNA helic 94.6 0.14 4.9E-06 44.1 8.9 93 113-206 77-187 (235)
230 2i3b_A HCR-ntpase, human cance 94.6 0.017 5.7E-07 48.6 2.8 22 114-135 3-24 (189)
231 1np6_A Molybdopterin-guanine d 94.6 0.02 7E-07 47.4 3.2 25 111-135 5-29 (174)
232 1a7j_A Phosphoribulokinase; tr 94.6 0.011 3.7E-07 53.3 1.7 25 111-135 4-28 (290)
233 3nwj_A ATSK2; P loop, shikimat 94.6 0.015 5.1E-07 51.2 2.5 23 113-135 49-71 (250)
234 2pcj_A ABC transporter, lipopr 94.6 0.017 5.9E-07 49.9 2.9 23 113-135 31-53 (224)
235 2r6a_A DNAB helicase, replicat 94.6 0.06 2.1E-06 51.6 7.0 49 113-164 204-252 (454)
236 3b9q_A Chloroplast SRP recepto 94.6 0.023 7.8E-07 51.5 3.8 25 111-135 99-123 (302)
237 2hf9_A Probable hydrogenase ni 94.6 0.022 7.4E-07 48.7 3.5 25 111-135 37-61 (226)
238 3p32_A Probable GTPase RV1496/ 94.5 0.027 9.2E-07 52.2 4.1 27 109-135 76-102 (355)
239 1ak2_A Adenylate kinase isoenz 94.5 0.024 8.1E-07 49.1 3.5 24 112-135 16-39 (233)
240 3r20_A Cytidylate kinase; stru 94.5 0.022 7.4E-07 49.6 3.2 24 112-135 9-32 (233)
241 1ltq_A Polynucleotide kinase; 94.5 0.023 7.9E-07 51.0 3.6 23 113-135 3-25 (301)
242 3vr4_D V-type sodium ATPase su 94.4 0.032 1.1E-06 53.2 4.6 105 96-205 140-258 (465)
243 1q3t_A Cytidylate kinase; nucl 94.4 0.023 8E-07 49.2 3.4 26 110-135 14-39 (236)
244 2xb4_A Adenylate kinase; ATP-b 94.4 0.022 7.5E-07 49.0 3.3 22 114-135 2-23 (223)
245 2cbz_A Multidrug resistance-as 94.4 0.021 7.1E-07 49.8 3.1 23 113-135 32-54 (237)
246 1b0u_A Histidine permease; ABC 94.4 0.021 7.2E-07 50.6 3.2 23 113-135 33-55 (262)
247 3d3q_A TRNA delta(2)-isopenten 94.4 0.023 7.8E-07 52.3 3.4 23 113-135 8-30 (340)
248 3b85_A Phosphate starvation-in 94.4 0.018 6.2E-07 49.2 2.6 22 114-135 24-45 (208)
249 2wjg_A FEOB, ferrous iron tran 94.4 0.037 1.3E-06 45.5 4.5 25 111-135 6-30 (188)
250 3gfo_A Cobalt import ATP-bindi 94.4 0.022 7.4E-07 50.9 3.2 23 113-135 35-57 (275)
251 3a8t_A Adenylate isopentenyltr 94.4 0.03 1E-06 51.4 4.0 24 112-135 40-63 (339)
252 1e4v_A Adenylate kinase; trans 94.3 0.021 7.3E-07 48.6 2.9 22 114-135 2-23 (214)
253 1yrb_A ATP(GTP)binding protein 94.3 0.035 1.2E-06 48.5 4.4 26 110-135 12-37 (262)
254 2wsm_A Hydrogenase expression/ 94.3 0.026 8.7E-07 48.0 3.4 26 110-135 28-53 (221)
255 1oix_A RAS-related protein RAB 94.3 0.027 9.2E-07 46.9 3.4 25 112-136 29-53 (191)
256 3zvl_A Bifunctional polynucleo 94.3 0.026 8.9E-07 53.5 3.7 27 109-135 255-281 (416)
257 4g1u_C Hemin import ATP-bindin 94.3 0.023 8E-07 50.5 3.2 23 113-135 38-60 (266)
258 3end_A Light-independent proto 94.3 0.028 9.5E-07 50.8 3.7 27 109-135 38-64 (307)
259 4eaq_A DTMP kinase, thymidylat 94.3 0.046 1.6E-06 47.3 5.0 26 111-136 25-50 (229)
260 1ji0_A ABC transporter; ATP bi 94.3 0.023 8E-07 49.6 3.1 23 113-135 33-55 (240)
261 2wji_A Ferrous iron transport 94.3 0.038 1.3E-06 44.7 4.2 23 113-135 4-26 (165)
262 1mv5_A LMRA, multidrug resista 94.3 0.026 8.9E-07 49.4 3.4 24 112-135 28-51 (243)
263 3sr0_A Adenylate kinase; phosp 94.3 0.025 8.6E-07 48.2 3.2 22 114-135 2-23 (206)
264 1g6h_A High-affinity branched- 94.3 0.024 8E-07 50.1 3.1 23 113-135 34-56 (257)
265 2d2e_A SUFC protein; ABC-ATPas 94.3 0.025 8.6E-07 49.7 3.3 23 113-135 30-52 (250)
266 3l0o_A Transcription terminati 94.2 0.17 5.9E-06 47.3 8.9 36 95-135 163-198 (427)
267 2dyk_A GTP-binding protein; GT 94.2 0.033 1.1E-06 44.3 3.7 23 113-135 2-24 (161)
268 2olj_A Amino acid ABC transpor 94.2 0.025 8.6E-07 50.2 3.2 23 113-135 51-73 (263)
269 2pze_A Cystic fibrosis transme 94.2 0.026 8.8E-07 48.9 3.2 23 113-135 35-57 (229)
270 2ff7_A Alpha-hemolysin translo 94.2 0.025 8.6E-07 49.6 3.1 23 113-135 36-58 (247)
271 3cmu_A Protein RECA, recombina 94.2 0.097 3.3E-06 58.6 8.3 88 111-205 382-471 (2050)
272 3exa_A TRNA delta(2)-isopenten 94.2 0.033 1.1E-06 50.6 3.8 24 112-135 3-26 (322)
273 2qe7_A ATP synthase subunit al 94.2 0.069 2.4E-06 51.5 6.3 101 96-205 151-264 (502)
274 2zu0_C Probable ATP-dependent 94.1 0.028 9.6E-07 49.9 3.3 23 113-135 47-69 (267)
275 1sgw_A Putative ABC transporte 94.1 0.022 7.7E-07 48.8 2.6 23 113-135 36-58 (214)
276 2zej_A Dardarin, leucine-rich 94.1 0.027 9.1E-07 46.5 3.0 22 114-135 4-25 (184)
277 1vpl_A ABC transporter, ATP-bi 94.1 0.027 9.3E-07 49.7 3.2 23 113-135 42-64 (256)
278 3crm_A TRNA delta(2)-isopenten 94.1 0.03 1E-06 51.2 3.5 23 113-135 6-28 (323)
279 2og2_A Putative signal recogni 94.1 0.032 1.1E-06 51.8 3.8 26 110-135 155-180 (359)
280 3cmw_A Protein RECA, recombina 94.1 0.083 2.8E-06 58.3 7.5 89 111-206 382-472 (1706)
281 1tue_A Replication protein E1; 94.1 0.025 8.4E-07 48.2 2.7 24 112-135 58-81 (212)
282 2ixe_A Antigen peptide transpo 94.1 0.027 9.3E-07 50.2 3.1 23 113-135 46-68 (271)
283 2vp4_A Deoxynucleoside kinase; 94.1 0.031 1.1E-06 48.3 3.4 26 110-135 18-43 (230)
284 2ghi_A Transport protein; mult 94.1 0.028 9.5E-07 49.8 3.1 23 113-135 47-69 (260)
285 2lkc_A Translation initiation 94.0 0.054 1.8E-06 43.9 4.6 25 111-135 7-31 (178)
286 2qi9_C Vitamin B12 import ATP- 94.0 0.03 1E-06 49.3 3.2 23 113-135 27-49 (249)
287 3bgw_A DNAB-like replicative h 94.0 0.21 7.1E-06 47.7 9.3 38 113-152 198-235 (444)
288 1zu4_A FTSY; GTPase, signal re 94.0 0.037 1.3E-06 50.6 3.8 26 110-135 103-128 (320)
289 2f9l_A RAB11B, member RAS onco 93.9 0.031 1.1E-06 46.7 3.1 24 112-135 5-28 (199)
290 2yz2_A Putative ABC transporte 93.9 0.03 1E-06 49.7 3.1 23 113-135 34-56 (266)
291 2eyu_A Twitching motility prot 93.9 0.038 1.3E-06 48.9 3.8 109 111-237 24-137 (261)
292 2qmh_A HPR kinase/phosphorylas 93.9 0.037 1.3E-06 46.8 3.5 23 113-135 35-57 (205)
293 3foz_A TRNA delta(2)-isopenten 93.9 0.042 1.4E-06 49.9 4.0 25 111-135 9-33 (316)
294 2nq2_C Hypothetical ABC transp 93.9 0.031 1.1E-06 49.2 3.2 124 113-237 32-193 (253)
295 2r9v_A ATP synthase subunit al 93.9 0.06 2.1E-06 52.0 5.3 89 114-206 177-278 (515)
296 2ihy_A ABC transporter, ATP-bi 93.9 0.031 1.1E-06 50.0 3.2 23 113-135 48-70 (279)
297 2v9p_A Replication protein E1; 93.9 0.031 1.1E-06 50.6 3.2 24 112-135 126-149 (305)
298 1fzq_A ADP-ribosylation factor 93.8 0.053 1.8E-06 44.6 4.3 26 110-135 14-39 (181)
299 1fx0_A ATP synthase alpha chai 93.8 0.066 2.3E-06 51.6 5.5 87 114-206 165-266 (507)
300 1z2a_A RAS-related protein RAB 93.8 0.042 1.4E-06 44.0 3.6 24 112-135 5-28 (168)
301 3cf2_A TER ATPase, transitiona 93.7 0.094 3.2E-06 53.8 6.7 97 83-206 478-581 (806)
302 4edh_A DTMP kinase, thymidylat 93.7 0.091 3.1E-06 44.9 5.6 24 112-135 6-29 (213)
303 1nlf_A Regulatory protein REPA 93.7 0.031 1.1E-06 49.7 2.7 24 112-135 30-53 (279)
304 1u0j_A DNA replication protein 93.7 0.06 2.1E-06 47.7 4.5 35 97-135 93-127 (267)
305 3k1j_A LON protease, ATP-depen 93.7 0.041 1.4E-06 54.8 3.9 42 83-135 42-83 (604)
306 2ce2_X GTPase HRAS; signaling 93.6 0.036 1.2E-06 44.1 2.8 23 114-136 5-27 (166)
307 1m7b_A RND3/RHOE small GTP-bin 93.6 0.042 1.4E-06 45.2 3.3 26 111-136 6-31 (184)
308 3hjn_A DTMP kinase, thymidylat 93.6 0.12 4.2E-06 43.4 6.3 50 114-165 2-51 (197)
309 1g41_A Heat shock protein HSLU 93.6 0.036 1.2E-06 52.9 3.2 50 83-135 16-73 (444)
310 2v3c_C SRP54, signal recogniti 93.6 0.038 1.3E-06 52.6 3.4 25 111-135 98-122 (432)
311 2afh_E Nitrogenase iron protei 93.6 0.042 1.5E-06 49.0 3.5 24 112-135 2-25 (289)
312 3sop_A Neuronal-specific septi 93.6 0.035 1.2E-06 49.4 2.9 22 114-135 4-25 (270)
313 1svm_A Large T antigen; AAA+ f 93.5 0.041 1.4E-06 51.4 3.4 25 111-135 168-192 (377)
314 3pqc_A Probable GTP-binding pr 93.5 0.055 1.9E-06 44.5 3.9 27 110-136 21-47 (195)
315 2nzj_A GTP-binding protein REM 93.5 0.057 1.9E-06 43.6 3.9 24 112-135 4-27 (175)
316 2yv5_A YJEQ protein; hydrolase 93.5 0.058 2E-06 48.7 4.3 31 95-135 157-187 (302)
317 4bas_A ADP-ribosylation factor 93.5 0.047 1.6E-06 45.2 3.5 28 109-136 14-41 (199)
318 1z08_A RAS-related protein RAB 93.5 0.06 2E-06 43.2 4.0 25 112-136 6-30 (170)
319 2ocp_A DGK, deoxyguanosine kin 93.4 0.047 1.6E-06 47.4 3.4 24 112-135 2-25 (241)
320 1moz_A ARL1, ADP-ribosylation 93.4 0.058 2E-06 44.0 3.9 25 111-135 17-41 (183)
321 1p5z_B DCK, deoxycytidine kina 93.4 0.033 1.1E-06 49.1 2.4 26 110-135 22-47 (263)
322 3con_A GTPase NRAS; structural 93.4 0.044 1.5E-06 45.1 3.1 24 113-136 22-45 (190)
323 1cp2_A CP2, nitrogenase iron p 93.4 0.045 1.5E-06 48.1 3.4 23 113-135 2-24 (269)
324 2c61_A A-type ATP synthase non 93.4 0.041 1.4E-06 52.7 3.2 104 96-204 141-258 (469)
325 1svi_A GTP-binding protein YSX 93.4 0.051 1.7E-06 44.9 3.5 26 110-135 21-46 (195)
326 2fn4_A P23, RAS-related protei 93.3 0.062 2.1E-06 43.5 3.9 27 110-136 7-33 (181)
327 1u8z_A RAS-related protein RAL 93.3 0.047 1.6E-06 43.5 3.1 24 113-136 5-28 (168)
328 3nh6_A ATP-binding cassette SU 93.3 0.033 1.1E-06 50.6 2.3 24 112-135 80-103 (306)
329 1nrj_B SR-beta, signal recogni 93.3 0.055 1.9E-06 45.7 3.6 27 110-136 10-36 (218)
330 1upt_A ARL1, ADP-ribosylation 93.3 0.073 2.5E-06 42.7 4.2 24 112-135 7-30 (171)
331 3oaa_A ATP synthase subunit al 93.3 0.21 7.1E-06 48.1 7.8 87 114-206 164-265 (513)
332 2erx_A GTP-binding protein DI- 93.2 0.054 1.8E-06 43.4 3.2 22 114-135 5-26 (172)
333 1nij_A Hypothetical protein YJ 93.2 0.045 1.5E-06 49.8 3.0 25 111-135 3-27 (318)
334 3ld9_A DTMP kinase, thymidylat 93.2 0.096 3.3E-06 45.1 4.9 56 110-165 19-74 (223)
335 1kao_A RAP2A; GTP-binding prot 93.2 0.054 1.8E-06 43.1 3.2 23 114-136 5-27 (167)
336 3fvq_A Fe(3+) IONS import ATP- 93.1 0.045 1.6E-06 50.7 3.0 124 113-238 31-204 (359)
337 1ek0_A Protein (GTP-binding pr 93.1 0.053 1.8E-06 43.4 3.1 23 114-136 5-27 (170)
338 3gqb_B V-type ATP synthase bet 93.1 0.037 1.3E-06 52.7 2.4 105 96-205 136-261 (464)
339 1c1y_A RAS-related protein RAP 93.1 0.053 1.8E-06 43.3 3.1 22 114-135 5-26 (167)
340 1z0j_A RAB-22, RAS-related pro 93.1 0.055 1.9E-06 43.3 3.2 24 113-136 7-30 (170)
341 3ihw_A Centg3; RAS, centaurin, 93.1 0.077 2.6E-06 43.7 4.1 25 111-135 19-43 (184)
342 1ky3_A GTP-binding protein YPT 93.1 0.066 2.3E-06 43.4 3.7 26 111-136 7-32 (182)
343 2bov_A RAla, RAS-related prote 93.1 0.071 2.4E-06 44.4 3.9 27 110-136 12-38 (206)
344 2gj8_A MNME, tRNA modification 93.0 0.051 1.8E-06 44.3 2.9 23 113-135 5-27 (172)
345 3tui_C Methionine import ATP-b 93.0 0.054 1.9E-06 50.3 3.3 125 113-238 55-229 (366)
346 3q72_A GTP-binding protein RAD 93.0 0.046 1.6E-06 43.8 2.6 22 114-135 4-25 (166)
347 1z47_A CYSA, putative ABC-tran 93.0 0.054 1.8E-06 50.2 3.3 23 113-135 42-64 (355)
348 3q85_A GTP-binding protein REM 93.0 0.071 2.4E-06 42.7 3.7 22 114-135 4-25 (169)
349 2r8r_A Sensor protein; KDPD, P 93.0 0.077 2.6E-06 45.8 4.0 107 114-234 8-128 (228)
350 2bbs_A Cystic fibrosis transme 93.0 0.048 1.6E-06 49.1 2.8 23 113-135 65-87 (290)
351 1lw7_A Transcriptional regulat 93.0 0.054 1.9E-06 50.3 3.3 24 112-135 170-193 (365)
352 3rlf_A Maltose/maltodextrin im 92.9 0.056 1.9E-06 50.5 3.3 23 113-135 30-52 (381)
353 3tw8_B RAS-related protein RAB 92.9 0.06 2.1E-06 43.6 3.2 27 110-136 7-33 (181)
354 3kkq_A RAS-related protein M-R 92.9 0.11 3.7E-06 42.4 4.7 26 111-136 17-42 (183)
355 1z06_A RAS-related protein RAB 92.9 0.074 2.5E-06 43.8 3.7 25 111-135 19-43 (189)
356 2yyz_A Sugar ABC transporter, 92.9 0.058 2E-06 50.0 3.3 23 113-135 30-52 (359)
357 3eph_A TRNA isopentenyltransfe 92.9 0.061 2.1E-06 50.6 3.4 23 113-135 3-25 (409)
358 2hxs_A RAB-26, RAS-related pro 92.8 0.094 3.2E-06 42.4 4.3 24 112-135 6-29 (178)
359 3iev_A GTP-binding protein ERA 92.8 0.064 2.2E-06 48.5 3.5 28 108-135 6-33 (308)
360 4gzl_A RAS-related C3 botulinu 92.8 0.066 2.3E-06 45.0 3.4 26 111-136 29-54 (204)
361 2it1_A 362AA long hypothetical 92.8 0.06 2.1E-06 50.0 3.3 23 113-135 30-52 (362)
362 3kta_A Chromosome segregation 92.8 0.06 2.1E-06 44.3 3.0 21 114-134 28-48 (182)
363 3bc1_A RAS-related protein RAB 92.8 0.077 2.6E-06 43.5 3.7 26 110-135 9-34 (195)
364 1wms_A RAB-9, RAB9, RAS-relate 92.8 0.067 2.3E-06 43.3 3.3 25 111-135 6-30 (177)
365 1r2q_A RAS-related protein RAB 92.8 0.065 2.2E-06 42.8 3.1 23 113-135 7-29 (170)
366 1v43_A Sugar-binding transport 92.7 0.062 2.1E-06 50.1 3.3 23 113-135 38-60 (372)
367 1g29_1 MALK, maltose transport 92.7 0.061 2.1E-06 50.2 3.3 23 113-135 30-52 (372)
368 1z0f_A RAB14, member RAS oncog 92.7 0.076 2.6E-06 42.9 3.5 26 111-136 14-39 (179)
369 4dsu_A GTPase KRAS, isoform 2B 92.7 0.082 2.8E-06 43.2 3.8 23 114-136 6-28 (189)
370 1r8s_A ADP-ribosylation factor 92.7 0.064 2.2E-06 42.8 3.0 21 115-135 3-23 (164)
371 2qu8_A Putative nucleolar GTP- 92.7 0.088 3E-06 45.0 4.0 26 110-135 27-52 (228)
372 3gmt_A Adenylate kinase; ssgci 92.7 0.063 2.2E-06 46.5 3.0 25 111-135 7-31 (230)
373 1u0l_A Probable GTPase ENGC; p 92.6 0.074 2.5E-06 48.0 3.6 32 95-135 161-192 (301)
374 2h92_A Cytidylate kinase; ross 92.6 0.056 1.9E-06 45.9 2.7 23 113-135 4-26 (219)
375 2www_A Methylmalonic aciduria 92.6 0.078 2.7E-06 49.0 3.8 25 111-135 73-97 (349)
376 1pui_A ENGB, probable GTP-bind 92.6 0.046 1.6E-06 45.9 2.1 25 111-135 25-49 (210)
377 3lxx_A GTPase IMAP family memb 92.6 0.084 2.9E-06 45.6 3.8 27 110-136 27-53 (239)
378 2oil_A CATX-8, RAS-related pro 92.6 0.084 2.9E-06 43.6 3.7 26 111-136 24-49 (193)
379 3t1o_A Gliding protein MGLA; G 92.6 0.068 2.3E-06 44.0 3.1 24 112-135 14-37 (198)
380 2ck3_A ATP synthase subunit al 92.6 0.2 7E-06 48.3 6.7 93 114-206 164-273 (510)
381 3thx_A DNA mismatch repair pro 92.6 0.12 4.2E-06 53.9 5.6 21 112-132 662-682 (934)
382 2a9k_A RAS-related protein RAL 92.6 0.085 2.9E-06 42.9 3.6 25 112-136 18-42 (187)
383 2axn_A 6-phosphofructo-2-kinas 92.6 0.078 2.7E-06 51.8 3.9 25 111-135 34-58 (520)
384 2aka_B Dynamin-1; fusion prote 92.6 0.12 4E-06 46.1 4.8 42 95-136 9-50 (299)
385 2a5j_A RAS-related protein RAB 92.5 0.11 3.6E-06 42.9 4.3 25 112-136 21-45 (191)
386 3d31_A Sulfate/molybdate ABC t 92.5 0.053 1.8E-06 50.1 2.6 125 113-238 27-193 (348)
387 2cxx_A Probable GTP-binding pr 92.5 0.06 2.1E-06 44.1 2.7 23 114-136 3-25 (190)
388 2iwr_A Centaurin gamma 1; ANK 92.5 0.056 1.9E-06 43.9 2.5 23 113-135 8-30 (178)
389 3llu_A RAS-related GTP-binding 92.5 0.071 2.4E-06 44.4 3.1 24 112-135 20-43 (196)
390 1g16_A RAS-related protein SEC 92.5 0.08 2.8E-06 42.3 3.3 23 113-135 4-26 (170)
391 2qm8_A GTPase/ATPase; G protei 92.4 0.089 3.1E-06 48.3 4.0 24 111-134 54-77 (337)
392 1mh1_A RAC1; GTP-binding, GTPa 92.4 0.074 2.5E-06 43.3 3.1 23 113-135 6-28 (186)
393 3c5c_A RAS-like protein 12; GD 92.4 0.092 3.1E-06 43.3 3.7 25 112-136 21-45 (187)
394 2efe_B Small GTP-binding prote 92.4 0.077 2.6E-06 43.1 3.1 25 112-136 12-36 (181)
395 2b6h_A ADP-ribosylation factor 92.4 0.095 3.3E-06 43.5 3.8 25 111-135 28-52 (192)
396 1m2o_B GTP-binding protein SAR 92.4 0.069 2.3E-06 44.3 2.8 23 113-135 24-46 (190)
397 1f6b_A SAR1; gtpases, N-termin 92.4 0.075 2.6E-06 44.4 3.1 24 112-135 25-48 (198)
398 3v9p_A DTMP kinase, thymidylat 92.3 0.097 3.3E-06 45.3 3.8 24 112-135 25-48 (227)
399 1zj6_A ADP-ribosylation factor 92.3 0.1 3.4E-06 42.9 3.8 25 111-135 15-39 (187)
400 3tkl_A RAS-related protein RAB 92.3 0.13 4.3E-06 42.4 4.5 26 111-136 15-40 (196)
401 3cbq_A GTP-binding protein REM 92.3 0.077 2.6E-06 44.2 3.1 24 111-134 22-45 (195)
402 3bwd_D RAC-like GTP-binding pr 92.3 0.079 2.7E-06 43.1 3.1 23 113-135 9-31 (182)
403 1vg8_A RAS-related protein RAB 92.3 0.095 3.2E-06 43.7 3.7 26 111-136 7-32 (207)
404 3t5g_A GTP-binding protein RHE 92.3 0.086 3E-06 42.9 3.4 25 112-136 6-30 (181)
405 4tmk_A Protein (thymidylate ki 92.3 0.13 4.5E-06 43.9 4.6 52 113-165 4-55 (213)
406 2atv_A RERG, RAS-like estrogen 92.3 0.08 2.7E-06 43.9 3.2 25 112-136 28-52 (196)
407 2bme_A RAB4A, RAS-related prot 92.3 0.093 3.2E-06 42.8 3.5 26 111-136 9-34 (186)
408 3f9v_A Minichromosome maintena 92.3 0.046 1.6E-06 54.4 1.9 51 82-135 295-350 (595)
409 2y8e_A RAB-protein 6, GH09086P 92.3 0.072 2.5E-06 43.0 2.8 23 113-135 15-37 (179)
410 3clv_A RAB5 protein, putative; 92.3 0.12 4.1E-06 42.5 4.3 25 112-136 7-31 (208)
411 3ch4_B Pmkase, phosphomevalona 92.2 0.1 3.5E-06 44.2 3.7 99 109-217 8-124 (202)
412 1oxx_K GLCV, glucose, ABC tran 92.2 0.05 1.7E-06 50.4 1.9 23 113-135 32-54 (353)
413 2ewv_A Twitching motility prot 92.2 0.091 3.1E-06 49.0 3.7 111 111-237 135-248 (372)
414 2p67_A LAO/AO transport system 92.2 0.091 3.1E-06 48.3 3.7 26 110-135 54-79 (341)
415 3lv8_A DTMP kinase, thymidylat 92.2 0.13 4.5E-06 44.7 4.5 52 112-164 27-78 (236)
416 2g6b_A RAS-related protein RAB 92.2 0.1 3.6E-06 42.2 3.7 26 111-136 9-34 (180)
417 4hlc_A DTMP kinase, thymidylat 92.1 0.24 8E-06 42.0 5.9 49 113-164 3-51 (205)
418 2gf9_A RAS-related protein RAB 92.1 0.11 3.7E-06 42.7 3.8 25 112-136 22-46 (189)
419 3gd7_A Fusion complex of cysti 92.1 0.075 2.6E-06 49.9 3.0 23 113-135 48-70 (390)
420 3cmw_A Protein RECA, recombina 92.0 0.26 8.9E-06 54.5 7.5 90 109-205 1428-1519(1706)
421 2gf0_A GTP-binding protein DI- 92.0 0.12 4E-06 42.7 3.9 25 111-135 7-31 (199)
422 1ksh_A ARF-like protein 2; sma 92.0 0.11 3.9E-06 42.4 3.7 26 111-136 17-42 (186)
423 2hup_A RAS-related protein RAB 92.0 0.092 3.1E-06 43.9 3.2 25 111-135 28-52 (201)
424 2cjw_A GTP-binding protein GEM 92.0 0.086 2.9E-06 43.8 3.0 23 112-134 6-28 (192)
425 2fh5_B SR-beta, signal recogni 92.0 0.093 3.2E-06 44.2 3.2 25 112-136 7-31 (214)
426 1ega_A Protein (GTP-binding pr 91.9 0.1 3.5E-06 47.1 3.6 25 111-135 7-31 (301)
427 4dzz_A Plasmid partitioning pr 91.9 0.097 3.3E-06 43.7 3.3 42 113-156 2-44 (206)
428 1tq4_A IIGP1, interferon-induc 91.9 0.045 1.5E-06 51.8 1.2 24 111-134 68-91 (413)
429 3reg_A RHO-like small GTPase; 91.9 0.093 3.2E-06 43.4 3.1 25 112-136 23-47 (194)
430 1zd9_A ADP-ribosylation factor 91.9 0.094 3.2E-06 43.2 3.1 25 112-136 22-46 (188)
431 3t34_A Dynamin-related protein 91.9 1.3 4.4E-05 40.7 11.2 25 111-135 33-57 (360)
432 2fg5_A RAB-22B, RAS-related pr 91.9 0.086 2.9E-06 43.6 2.9 25 112-136 23-47 (192)
433 3io3_A DEHA2D07832P; chaperone 91.9 0.16 5.6E-06 46.8 5.0 27 109-135 15-41 (348)
434 1zbd_A Rabphilin-3A; G protein 91.8 0.12 4.2E-06 42.9 3.8 26 111-136 7-32 (203)
435 3mfy_A V-type ATP synthase alp 91.8 0.53 1.8E-05 45.9 8.6 46 114-163 229-275 (588)
436 3oes_A GTPase rhebl1; small GT 91.8 0.086 3E-06 44.0 2.8 26 111-136 23-48 (201)
437 1m8p_A Sulfate adenylyltransfe 91.8 0.17 5.8E-06 50.0 5.3 26 110-135 394-419 (573)
438 1g8f_A Sulfate adenylyltransfe 91.8 0.091 3.1E-06 51.1 3.3 26 111-136 394-419 (511)
439 3k9g_A PF-32 protein; ssgcid, 91.8 0.1 3.5E-06 45.8 3.4 43 110-155 25-68 (267)
440 1bif_A 6-phosphofructo-2-kinas 91.8 0.1 3.6E-06 50.1 3.7 25 111-135 38-62 (469)
441 2h17_A ADP-ribosylation factor 91.8 0.095 3.3E-06 42.8 3.0 25 111-135 20-44 (181)
442 2p5s_A RAS and EF-hand domain 91.8 0.12 4.1E-06 43.0 3.7 26 110-135 26-51 (199)
443 1x3s_A RAS-related protein RAB 91.7 0.1 3.4E-06 43.0 3.1 24 113-136 16-39 (195)
444 2qnr_A Septin-2, protein NEDD5 91.7 0.07 2.4E-06 48.2 2.3 22 114-135 20-41 (301)
445 2ew1_A RAS-related protein RAB 91.7 0.09 3.1E-06 44.2 2.8 25 111-135 25-49 (201)
446 2obl_A ESCN; ATPase, hydrolase 91.7 0.089 3E-06 48.6 3.0 23 113-135 72-94 (347)
447 3ea0_A ATPase, para family; al 91.7 0.11 3.8E-06 44.7 3.5 25 111-135 3-28 (245)
448 2g3y_A GTP-binding protein GEM 91.6 0.13 4.4E-06 43.8 3.8 23 112-134 37-59 (211)
449 2gza_A Type IV secretion syste 91.6 0.075 2.6E-06 49.3 2.4 23 113-135 176-198 (361)
450 1gwn_A RHO-related GTP-binding 91.6 0.11 3.8E-06 43.7 3.3 25 112-136 28-52 (205)
451 3iqw_A Tail-anchored protein t 91.6 0.2 7E-06 45.9 5.3 26 110-135 14-39 (334)
452 3cr8_A Sulfate adenylyltranfer 91.6 0.07 2.4E-06 52.4 2.3 24 112-135 369-392 (552)
453 3fdi_A Uncharacterized protein 91.5 0.095 3.3E-06 44.3 2.8 23 113-135 7-29 (201)
454 2q3h_A RAS homolog gene family 91.5 0.13 4.4E-06 42.7 3.6 26 111-136 19-44 (201)
455 2rcn_A Probable GTPase ENGC; Y 91.5 0.11 3.6E-06 48.2 3.3 22 114-135 217-238 (358)
456 3fkq_A NTRC-like two-domain pr 91.5 0.14 4.7E-06 47.7 4.1 27 109-135 140-167 (373)
457 3k53_A Ferrous iron transport 91.5 0.13 4.3E-06 45.5 3.7 24 112-135 3-26 (271)
458 2o52_A RAS-related protein RAB 91.5 0.097 3.3E-06 43.7 2.8 25 111-135 24-48 (200)
459 3cph_A RAS-related protein SEC 91.5 0.18 6.1E-06 42.1 4.5 26 111-136 19-44 (213)
460 3tqf_A HPR(Ser) kinase; transf 91.5 0.1 3.5E-06 43.1 2.8 22 114-135 18-39 (181)
461 3dz8_A RAS-related protein RAB 91.5 0.095 3.2E-06 43.3 2.7 24 112-135 23-46 (191)
462 3thx_B DNA mismatch repair pro 91.4 0.16 5.6E-06 52.8 5.0 23 111-133 672-694 (918)
463 2il1_A RAB12; G-protein, GDP, 91.4 0.12 4E-06 42.9 3.1 25 112-136 26-50 (192)
464 2j1l_A RHO-related GTP-binding 91.3 0.1 3.5E-06 44.1 2.8 24 112-135 34-57 (214)
465 2h57_A ADP-ribosylation factor 91.3 0.1 3.4E-06 43.0 2.7 25 112-136 21-45 (190)
466 2bcg_Y Protein YP2, GTP-bindin 91.3 0.1 3.5E-06 43.6 2.8 26 111-136 7-32 (206)
467 2qag_B Septin-6, protein NEDD5 91.3 0.1 3.4E-06 49.5 2.9 21 115-135 45-65 (427)
468 2pt7_A CAG-ALFA; ATPase, prote 91.3 0.084 2.9E-06 48.4 2.4 107 113-236 172-278 (330)
469 4dhe_A Probable GTP-binding pr 91.3 0.083 2.8E-06 44.7 2.2 26 111-136 28-53 (223)
470 2xtp_A GTPase IMAP family memb 91.3 0.14 4.7E-06 44.8 3.7 26 111-136 21-46 (260)
471 1ypw_A Transitional endoplasmi 91.2 0.079 2.7E-06 54.6 2.3 50 83-135 478-534 (806)
472 2atx_A Small GTP binding prote 91.2 0.11 3.8E-06 42.9 2.9 24 112-135 18-41 (194)
473 2fv8_A H6, RHO-related GTP-bin 91.2 0.11 3.8E-06 43.5 2.9 24 113-136 26-49 (207)
474 2f7s_A C25KG, RAS-related prot 91.1 0.13 4.4E-06 43.3 3.3 24 112-135 25-48 (217)
475 3kjh_A CO dehydrogenase/acetyl 91.1 0.19 6.7E-06 43.1 4.5 39 115-155 3-41 (254)
476 3b1v_A Ferrous iron uptake tra 91.1 0.2 6.9E-06 44.4 4.6 24 112-135 3-26 (272)
477 1x6v_B Bifunctional 3'-phospho 91.1 0.15 5E-06 50.8 4.0 25 111-135 51-75 (630)
478 2zts_A Putative uncharacterize 91.1 0.13 4.3E-06 44.3 3.2 49 112-163 30-78 (251)
479 1jwy_B Dynamin A GTPase domain 91.1 0.24 8.3E-06 44.4 5.2 28 109-136 21-48 (315)
480 1p9r_A General secretion pathw 91.1 0.12 4.2E-06 48.9 3.3 25 111-135 166-190 (418)
481 3tmk_A Thymidylate kinase; pho 91.0 0.22 7.6E-06 42.6 4.6 23 113-135 6-28 (216)
482 2npi_A Protein CLP1; CLP1-PCF1 91.0 0.09 3.1E-06 50.5 2.3 23 113-135 139-161 (460)
483 4dkx_A RAS-related protein RAB 91.0 0.13 4.4E-06 44.0 3.1 22 114-135 15-36 (216)
484 1r6b_X CLPA protein; AAA+, N-t 91.0 0.13 4.5E-06 52.4 3.7 50 83-135 459-511 (758)
485 3q3j_B RHO-related GTP-binding 91.0 0.13 4.4E-06 43.5 3.1 25 112-136 27-51 (214)
486 2fu5_C RAS-related protein RAB 90.9 0.095 3.2E-06 42.7 2.1 25 111-135 7-31 (183)
487 2gco_A H9, RHO-related GTP-bin 90.9 0.12 4.2E-06 43.1 2.8 24 113-136 26-49 (201)
488 4i1u_A Dephospho-COA kinase; s 90.8 0.17 5.7E-06 43.2 3.6 27 109-135 6-32 (210)
489 2dpy_A FLII, flagellum-specifi 90.8 0.12 4.1E-06 49.3 3.0 23 113-135 158-180 (438)
490 3vr4_A V-type sodium ATPase ca 90.7 0.65 2.2E-05 45.5 8.0 59 96-163 221-280 (600)
491 3ozx_A RNAse L inhibitor; ATP 90.7 0.13 4.4E-06 50.5 3.2 23 113-135 295-317 (538)
492 3zq6_A Putative arsenical pump 90.7 0.34 1.2E-05 44.0 5.9 24 112-135 14-37 (324)
493 2qag_C Septin-7; cell cycle, c 90.7 0.13 4.3E-06 48.8 3.0 22 115-136 34-55 (418)
494 1wf3_A GTP-binding protein; GT 90.6 0.17 5.7E-06 45.7 3.7 25 111-135 6-30 (301)
495 3euj_A Chromosome partition pr 90.6 0.14 4.9E-06 49.3 3.3 23 113-135 30-52 (483)
496 1f2t_A RAD50 ABC-ATPase; DNA d 90.6 0.21 7E-06 40.0 3.8 22 112-133 23-44 (149)
497 1c9k_A COBU, adenosylcobinamid 90.5 0.13 4.5E-06 42.7 2.6 21 115-135 2-22 (180)
498 1h65_A Chloroplast outer envel 90.5 0.16 5.3E-06 44.9 3.3 26 111-136 38-63 (270)
499 1yqt_A RNAse L inhibitor; ATP- 90.5 0.15 5E-06 50.0 3.3 23 113-135 48-70 (538)
500 1yqt_A RNAse L inhibitor; ATP- 90.4 0.15 5.1E-06 50.0 3.3 125 113-238 313-467 (538)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.9e-38 Score=316.42 Aligned_cols=243 Identities=15% Similarity=0.206 Sum_probs=187.3
Q ss_pred cccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhc--CccccCCcceeEEEEeCCCC--CHHH
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYN--NNFVKFYFDCHAWVRVSNFY--NFKR 158 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~--~~~~~~~F~~~~wv~~~~~~--~~~~ 158 (348)
..|||+.++ ++|.++|.. ..+...++|+|+||||+||||||+++|+ +.+++.+|+.++||++++.+ +...
T Consensus 129 ~~~GR~~~~---~~l~~~L~~---~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 202 (549)
T 2a5y_B 129 TCYIREYHV---DRVIKKLDE---MCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFD 202 (549)
T ss_dssp CSCCCHHHH---HHHHHHHHH---HTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHH
T ss_pred ccCCchHHH---HHHHHHHhc---ccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHH
Confidence 336999999 999999972 1244689999999999999999999998 66799999999999999885 8999
Q ss_pred HHHHHHHHhCCCCC---ccccCCCCHHHHHHHHHHHhcCC-eEEEEEeCCCChhhHHHHHhhCCCCCCCcEEEEEeCChh
Q 040110 159 ILDDIMKSLMPTSS---WLKIMGKDYKSEKTILRDYLTNK-KYFTVLDDVWIEKIWDDLREALPDNQIGSRALITVGPHN 234 (348)
Q Consensus 159 ~~~~i~~~l~~~~~---~~~~~~~~~~~~~~~l~~~L~~k-r~LlVLDdv~~~~~~~~l~~~l~~~~~gskIlvTTR~~~ 234 (348)
++..|+.+++.... .......+...+...+++.|+++ |+||||||||+.+++ .+.. .+||+||||||+..
T Consensus 203 ~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~ 276 (549)
T 2a5y_B 203 LFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVE 276 (549)
T ss_dssp HHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGG
T ss_pred HHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHH
Confidence 99999999987522 11223446677899999999996 999999999998765 2221 16899999999999
Q ss_pred hhhh-------cccC-------------------------------CCCc-CCCC-cccccCccccCCHHHHHHHHHHhC
Q 040110 235 ILTS-------IELE-------------------------------NGEK-NRHD-SALVGGPLIRIKHETWQFFILHYG 274 (348)
Q Consensus 235 v~~~-------~~l~-------------------------------~~~C-~Lp~-~~~ig~~L~~~~~~~w~~~~~~~~ 274 (348)
++.. |.++ ...| |||+ ++++|+.|+.+. |+.+ +.+.
T Consensus 277 v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~---w~~~-~~l~ 352 (549)
T 2a5y_B 277 ISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT---FEKM-AQLN 352 (549)
T ss_dssp GGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS---HHHH-HHHH
T ss_pred HHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch---HHHH-HHhH
Confidence 8875 3333 2346 9999 999999998864 3332 2221
Q ss_pred CCCCCCCCCCcchhccc-cccCCCChhHHHHHh-----------HhccCCCCceecHHHHHHHHHhc--CCCCC---CCC
Q 040110 275 STPLENETEGPSVGLKL-VSLSELPFPLIVCCL-----------YFCVFPTDIELTTRQLCRLWTAE--GLRPG---NYD 337 (348)
Q Consensus 275 ~~~~~~~~~~~~i~~~l-~s~~~Lp~~lk~cf~-----------y~a~fp~~~~i~~~~Li~~W~ae--G~i~~---~~~ 337 (348)
.. ....+ ...+...+ +||+.||+++|.||+ |||+||+++.|+ +++|+|+ ||+.. +.+
T Consensus 353 ~~-l~~~~-~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~ 426 (549)
T 2a5y_B 353 NK-LESRG-LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQL 426 (549)
T ss_dssp HH-HHHHC-SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCC
T ss_pred HH-hhccc-HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCC
Confidence 11 11001 23465667 999999999999999 999999999999 8999999 99987 567
Q ss_pred hHHHHHhhhcC
Q 040110 338 SEKMAEEYLKQ 348 (348)
Q Consensus 338 ~e~~~~~y~~e 348 (348)
.+++++ ||++
T Consensus 427 ~~~~~~-~l~~ 436 (549)
T 2a5y_B 427 DDEVAD-RLKR 436 (549)
T ss_dssp THHHHH-HHHH
T ss_pred HHHHHH-HHHH
Confidence 899998 8864
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.97 E-value=6.6e-33 Score=284.98 Aligned_cols=219 Identities=17% Similarity=0.168 Sum_probs=174.5
Q ss_pred ccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcCccccCCcce-eEEEEeCCCCCHHHHHHH
Q 040110 84 LLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNNNFVKFYFDC-HAWVRVSNFYNFKRILDD 162 (348)
Q Consensus 84 ~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~ 162 (348)
.|||+.++ ++|.++|.. . +..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..
T Consensus 130 ~VGRe~eL---eeL~elL~~----~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~ 201 (1221)
T 1vt4_I 130 NVSRLQPY---LKLRQALLE----L-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201 (1221)
T ss_dssp CCCCHHHH---HHHHHHHHH----C-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHH
T ss_pred CCCcHHHH---HHHHHHHhc----c-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHH
Confidence 49999999 999999972 1 24789999999999999999999998778899996 899999999998888888
Q ss_pred HHHHhCCCCCcc--cc-----CCCCHHHHHHHHHHHh---cCCeEEEEEeCCCChhhHHHHHhhCCCCCCCcEEEEEeCC
Q 040110 163 IMKSLMPTSSWL--KI-----MGKDYKSEKTILRDYL---TNKKYFTVLDDVWIEKIWDDLREALPDNQIGSRALITVGP 232 (348)
Q Consensus 163 i~~~l~~~~~~~--~~-----~~~~~~~~~~~l~~~L---~~kr~LlVLDdv~~~~~~~~l~~~l~~~~~gskIlvTTR~ 232 (348)
|+..++...... .. ...+.+.+...+++.| .++|+||||||||+.+.|+.+. +||+||||||+
T Consensus 202 Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd 274 (1221)
T 1vt4_I 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSC
T ss_pred HHHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccC
Confidence 777543211000 00 0113455667777766 6799999999999998888763 58999999999
Q ss_pred hhhhhh------cc---------cC--------------------CCCc-CCCC-cccccCccccCC--HHHHHHHHHHh
Q 040110 233 HNILTS------IE---------LE--------------------NGEK-NRHD-SALVGGPLIRIK--HETWQFFILHY 273 (348)
Q Consensus 233 ~~v~~~------~~---------l~--------------------~~~C-~Lp~-~~~ig~~L~~~~--~~~w~~~~~~~ 273 (348)
+.++.. |. +. .+.| |||+ ++++|+.|+.+. .+.|+..
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~---- 350 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV---- 350 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCTTTHHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHC----
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhcC----
Confidence 998742 22 22 2347 9999 899999999874 7888653
Q ss_pred CCCCCCCCCCCcchhccc-cccCCCChhH-HHHHhHhccCCCCceecHHHHHHHHHhcC
Q 040110 274 GSTPLENETEGPSVGLKL-VSLSELPFPL-IVCCLYFCVFPTDIELTTRQLCRLWTAEG 330 (348)
Q Consensus 274 ~~~~~~~~~~~~~i~~~l-~s~~~Lp~~l-k~cf~y~a~fp~~~~i~~~~Li~~W~aeG 330 (348)
. ...+...+ +||+.||+++ |.||+|||+||+++.|+++.|+.+|+++|
T Consensus 351 --~-------~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG 400 (1221)
T 1vt4_I 351 --N-------CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400 (1221)
T ss_dssp --S-------CHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC
T ss_pred --C-------hhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC
Confidence 1 14576667 9999999998 99999999999999999999999999986
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=2.8e-32 Score=294.24 Aligned_cols=232 Identities=18% Similarity=0.290 Sum_probs=181.9
Q ss_pred cccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcCccc-cCCcc-eeEEEEeCCCCC--HHH
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNNNFV-KFYFD-CHAWVRVSNFYN--FKR 158 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~-~~~F~-~~~wv~~~~~~~--~~~ 158 (348)
.||||+.++ ++|.++|. ..++..++|+|+||||+||||||+++|++.+. ..+|. .++|+++++..+ ...
T Consensus 125 ~~vgR~~~~---~~l~~~l~----~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 125 IFVTRKKLV---HAIQQKLW----KLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp SCCCCHHHH---HHHHHHHH----TTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred eeccHHHHH---HHHHHHHh----hccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHH
Confidence 799999999 99999997 33467899999999999999999999998543 45564 777999988543 445
Q ss_pred HHHHHHHHhCCCCCccccCCCCHHHHHHHHHHHhcCC--eEEEEEeCCCChhhHHHHHhhCCCCCCCcEEEEEeCChhhh
Q 040110 159 ILDDIMKSLMPTSSWLKIMGKDYKSEKTILRDYLTNK--KYFTVLDDVWIEKIWDDLREALPDNQIGSRALITVGPHNIL 236 (348)
Q Consensus 159 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~k--r~LlVLDdv~~~~~~~~l~~~l~~~~~gskIlvTTR~~~v~ 236 (348)
.+..++..+............+.+.+...++..|.++ |+||||||||+..+|..+ .+||+||||||++.++
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~ 270 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVT 270 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTT
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHH
Confidence 5777888887653321233467888999999999887 999999999998776543 5689999999999988
Q ss_pred hh-------cc----cC--------------------------CCCc-CCCC-cccccCccccCCHHHHHHHHHHhCCCC
Q 040110 237 TS-------IE----LE--------------------------NGEK-NRHD-SALVGGPLIRIKHETWQFFILHYGSTP 277 (348)
Q Consensus 237 ~~-------~~----l~--------------------------~~~C-~Lp~-~~~ig~~L~~~~~~~w~~~~~~~~~~~ 277 (348)
.. +. +. ...| |||+ |+++|+.|+.++ ..|..+++.+....
T Consensus 271 ~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~ 349 (1249)
T 3sfz_A 271 DSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQ 349 (1249)
T ss_dssp TTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCC
T ss_pred HhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhh
Confidence 43 22 22 2356 9999 999999999876 56777777764331
Q ss_pred ---CCC--CCCCcchhccc-cccCCCChhHHHHHhHhccCCCCceecHHHHHHHHHhc
Q 040110 278 ---LEN--ETEGPSVGLKL-VSLSELPFPLIVCCLYFCVFPTDIELTTRQLCRLWTAE 329 (348)
Q Consensus 278 ---~~~--~~~~~~i~~~l-~s~~~Lp~~lk~cf~y~a~fp~~~~i~~~~Li~~W~ae 329 (348)
+.. ......+...+ +||+.||+++|.||+|||+||+++.|+++.++.+|.++
T Consensus 350 ~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~ 407 (1249)
T 3sfz_A 350 FKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE 407 (1249)
T ss_dssp CCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC
T ss_pred hhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC
Confidence 111 11223465666 99999999999999999999999999999999999775
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.95 E-value=6e-29 Score=249.81 Aligned_cols=231 Identities=18% Similarity=0.292 Sum_probs=173.1
Q ss_pred cccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcCccc-cCCcc-eeEEEEeCCCCCHHHHH
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNNNFV-KFYFD-CHAWVRVSNFYNFKRIL 160 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~-~~~F~-~~~wv~~~~~~~~~~~~ 160 (348)
.||||+.++ ++|.++|. ....+.++++|+||||+||||||.+++++..+ ..+|+ .++|++++.. +...++
T Consensus 125 ~~vGR~~~l---~~L~~~L~----~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~ 196 (591)
T 1z6t_A 125 VFVTRKKLV---NAIQQKLS----KLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLL 196 (591)
T ss_dssp SCCCCHHHH---HHHHHHHT----TSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHH
T ss_pred eecccHHHH---HHHHHHHh----cccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHH
Confidence 899999999 99999998 33456789999999999999999999998655 78895 8999999765 333333
Q ss_pred H---HHHHHhCCCCCccccCCCCHHHHHHHHHHHhcC--CeEEEEEeCCCChhhHHHHHhhCCCCCCCcEEEEEeCChhh
Q 040110 161 D---DIMKSLMPTSSWLKIMGKDYKSEKTILRDYLTN--KKYFTVLDDVWIEKIWDDLREALPDNQIGSRALITVGPHNI 235 (348)
Q Consensus 161 ~---~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~--kr~LlVLDdv~~~~~~~~l~~~l~~~~~gskIlvTTR~~~v 235 (348)
. .++..++...........+...+...+...+.+ +++||||||+|+...+.. + .+||+||||||+..+
T Consensus 197 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~----l---~~~~~ilvTsR~~~~ 269 (591)
T 1z6t_A 197 MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA----F---DSQCQILLTTRDKSV 269 (591)
T ss_dssp HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT----T---CSSCEEEEEESCGGG
T ss_pred HHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH----h---cCCCeEEEECCCcHH
Confidence 3 344455532111022345677888889988876 789999999998765543 2 458999999999987
Q ss_pred hhh-----ccc------C--------------------------CCCc-CCCC-cccccCccccCCHHHHHHHHHHhCCC
Q 040110 236 LTS-----IEL------E--------------------------NGEK-NRHD-SALVGGPLIRIKHETWQFFILHYGST 276 (348)
Q Consensus 236 ~~~-----~~l------~--------------------------~~~C-~Lp~-~~~ig~~L~~~~~~~w~~~~~~~~~~ 276 (348)
+.. +.+ + ...| |+|+ +..+|+.|+.+. ..|..+++.+...
T Consensus 270 ~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~ 348 (591)
T 1z6t_A 270 TDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNK 348 (591)
T ss_dssp GTTCCSCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSC
T ss_pred HHhcCCCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHh
Confidence 754 222 2 1245 9998 888898888763 4688888776543
Q ss_pred CCC---C--CCCCcchhccc-cccCCCChhHHHHHhHhccCCCCceecHHHHHHHHHhc
Q 040110 277 PLE---N--ETEGPSVGLKL-VSLSELPFPLIVCCLYFCVFPTDIELTTRQLCRLWTAE 329 (348)
Q Consensus 277 ~~~---~--~~~~~~i~~~l-~s~~~Lp~~lk~cf~y~a~fp~~~~i~~~~Li~~W~ae 329 (348)
... . ......+...+ .||+.||++.|.||++||+||+++.|+.+.|+.+|.++
T Consensus 349 ~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~ 407 (591)
T 1z6t_A 349 QFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME 407 (591)
T ss_dssp CCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC
Confidence 111 1 11223565666 99999999999999999999999999999999999654
No 5
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.20 E-value=3.8e-11 Score=114.38 Aligned_cols=149 Identities=16% Similarity=0.040 Sum_probs=97.1
Q ss_pred ccCcccccccccccHHHHHhhc-CCCCCCCCCCcEEEEE--ECCCCCcHHHHHHHHhcCcccc---CCcc-eeEEEEeCC
Q 040110 80 ICDALLGLQSKIINLRNLHQRL-PPSSGLGQPTHSVVAI--LDSRGFDKTAFAAEIYNNNFVK---FYFD-CHAWVRVSN 152 (348)
Q Consensus 80 ~~~~~vGr~~~~~~~~~l~~~L-~~~~~~~~~~~~vi~I--~G~gGvGKTtLA~~v~~~~~~~---~~F~-~~~wv~~~~ 152 (348)
.++.++||+.++ +.|.++| .............+.| +|++|+||||||+.+++..... ..|+ ..+|+++..
T Consensus 20 ~p~~l~gR~~el---~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
T 1w5s_A 20 IPPELRVRRGEA---EALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFN 96 (412)
T ss_dssp CCSSCSSSCHHH---HHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG
T ss_pred CCCCCCChHHHH---HHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCC
Confidence 335899999999 9998888 3100010023445666 9999999999999999873211 1123 357888777
Q ss_pred CCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHHhc--CCeEEEEEeCCCCh--------hhHHHHHhhC---CC
Q 040110 153 FYNFKRILDDIMKSLMPTSSWLKIMGKDYKSEKTILRDYLT--NKKYFTVLDDVWIE--------KIWDDLREAL---PD 219 (348)
Q Consensus 153 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~--------~~~~~l~~~l---~~ 219 (348)
..+...++..++.+++...+ ....+..++...+...+. +++++|||||++.. ..+..+...+ +.
T Consensus 97 ~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~ 173 (412)
T 1w5s_A 97 APNLYTILSLIVRQTGYPIQ---VRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPS 173 (412)
T ss_dssp CCSHHHHHHHHHHHHTCCCC---CTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCC
T ss_pred CCCHHHHHHHHHHHhCCCCC---CCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhccc
Confidence 77889999999999976421 123345667777777775 67999999999763 2333333322 21
Q ss_pred CC--CCcEEEEEeCChh
Q 040110 220 NQ--IGSRALITVGPHN 234 (348)
Q Consensus 220 ~~--~gskIlvTTR~~~ 234 (348)
.+ ....+|+||+...
T Consensus 174 ~~~~~~v~lI~~~~~~~ 190 (412)
T 1w5s_A 174 RDGVNRIGFLLVASDVR 190 (412)
T ss_dssp TTSCCBEEEEEEEEETH
T ss_pred CCCCceEEEEEEecccc
Confidence 12 3445777887654
No 6
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.06 E-value=6e-10 Score=104.89 Aligned_cols=143 Identities=17% Similarity=0.122 Sum_probs=96.7
Q ss_pred CcccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcCccccCC------cceeEEEEeCCCCC
Q 040110 82 DALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNNNFVKFY------FDCHAWVRVSNFYN 155 (348)
Q Consensus 82 ~~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~------F~~~~wv~~~~~~~ 155 (348)
+.++||+.+. +.+.++|... ........+.|+|++|+||||||+.+++. .... -...+|+++....+
T Consensus 19 ~~~~gr~~~~---~~l~~~l~~~--~~~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~ 91 (387)
T 2v1u_A 19 DVLPHREAEL---RRLAEVLAPA--LRGEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRET 91 (387)
T ss_dssp SCCTTCHHHH---HHHHHTTGGG--TSSCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCS
T ss_pred CCCCCHHHHH---HHHHHHHHHH--HcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCC
Confidence 5899999999 9999988521 11234456889999999999999999987 3221 12466788888888
Q ss_pred HHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHHhc--CCeEEEEEeCCCChh----hHHHH---HhhCCCC--CCCc
Q 040110 156 FKRILDDIMKSLMPTSSWLKIMGKDYKSEKTILRDYLT--NKKYFTVLDDVWIEK----IWDDL---REALPDN--QIGS 224 (348)
Q Consensus 156 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~----~~~~l---~~~l~~~--~~gs 224 (348)
...++..++.+++...+ ....+..++...+...+. +++.+|+||+++... ..+.+ ....... ..+.
T Consensus 92 ~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~ 168 (387)
T 2v1u_A 92 PYRVASAIAEAVGVRVP---FTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWV 168 (387)
T ss_dssp HHHHHHHHHHHHSCCCC---SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----C
T ss_pred HHHHHHHHHHHhCCCCC---CCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceE
Confidence 89999999999976432 233456677777777774 468999999997642 22222 2222111 3355
Q ss_pred EEEEEeCChh
Q 040110 225 RALITVGPHN 234 (348)
Q Consensus 225 kIlvTTR~~~ 234 (348)
.+|.||+...
T Consensus 169 ~~I~~t~~~~ 178 (387)
T 2v1u_A 169 SLVGITNSLG 178 (387)
T ss_dssp EEEEECSCST
T ss_pred EEEEEECCCc
Confidence 6777777653
No 7
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.04 E-value=1.7e-10 Score=108.79 Aligned_cols=146 Identities=14% Similarity=0.010 Sum_probs=96.6
Q ss_pred CcccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcCccc----cCC--cceeEEEEeCCCC-
Q 040110 82 DALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNNNFV----KFY--FDCHAWVRVSNFY- 154 (348)
Q Consensus 82 ~~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~----~~~--F~~~~wv~~~~~~- 154 (348)
+.++||+.++ +.+.++|... ......+.+.|+|++|+||||||+.+++...- ... ....+|+++....
T Consensus 20 ~~l~gr~~~~---~~l~~~l~~~--~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 94 (384)
T 2qby_B 20 KEIPFREDIL---RDAAIAIRYF--VKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGG 94 (384)
T ss_dssp SSCTTCHHHH---HHHHHHHHHH--HTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCS
T ss_pred CCCCChHHHH---HHHHHHHHHH--HcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCC
Confidence 5899999999 8888777521 01233457889999999999999999986211 111 2256778777666
Q ss_pred CHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHHhcCCeEEEEEeCCCChhh---HHHHHhhCCCCCCCcEEEEEeC
Q 040110 155 NFKRILDDIMKSLMPTSSWLKIMGKDYKSEKTILRDYLTNKKYFTVLDDVWIEKI---WDDLREALPDNQIGSRALITVG 231 (348)
Q Consensus 155 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~---~~~l~~~l~~~~~gskIlvTTR 231 (348)
+...++..++..+..... .....+...+...+...+..++.+||||+++.... .+.+...+.....+..+|+||+
T Consensus 95 ~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~ 172 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSV--PKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISN 172 (384)
T ss_dssp CHHHHHHHHHHHHHCSCC--CSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECS
T ss_pred CHHHHHHHHHHHhcCCCC--CCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEEC
Confidence 888888999888832211 12233456777888888887766999999975421 1220222211115778888988
Q ss_pred Chh
Q 040110 232 PHN 234 (348)
Q Consensus 232 ~~~ 234 (348)
...
T Consensus 173 ~~~ 175 (384)
T 2qby_B 173 DIN 175 (384)
T ss_dssp STT
T ss_pred CCc
Confidence 764
No 8
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.04 E-value=2.9e-10 Score=106.96 Aligned_cols=146 Identities=18% Similarity=0.178 Sum_probs=97.2
Q ss_pred ccCcccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcCccccCCc---ceeEEEEeCCCCCH
Q 040110 80 ICDALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNNNFVKFYF---DCHAWVRVSNFYNF 156 (348)
Q Consensus 80 ~~~~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F---~~~~wv~~~~~~~~ 156 (348)
.++.|+||+.++ +.+.+++... ........+.|+|++|+||||||+.+++. ....+ ...+|+++....+.
T Consensus 18 ~p~~~~gr~~e~---~~l~~~l~~~--~~~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~ 90 (386)
T 2qby_A 18 IPDELPHREDQI---RKIASILAPL--YREEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTP 90 (386)
T ss_dssp CCSCCTTCHHHH---HHHHHSSGGG--GGTCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSH
T ss_pred CCCCCCChHHHH---HHHHHHHHHH--HcCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCH
Confidence 335899999999 9999988721 01234457889999999999999999987 33322 24667777666677
Q ss_pred HHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHHhcC--CeEEEEEeCCCCh------hhHHHHHhhCCC-CCCCcEEE
Q 040110 157 KRILDDIMKSLMPTSSWLKIMGKDYKSEKTILRDYLTN--KKYFTVLDDVWIE------KIWDDLREALPD-NQIGSRAL 227 (348)
Q Consensus 157 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~--kr~LlVLDdv~~~------~~~~~l~~~l~~-~~~gskIl 227 (348)
..++..++..++.... ....+..+....+...+.. ++.+||||+++.. ..+..+...+.. ...+..+|
T Consensus 91 ~~~~~~i~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I 167 (386)
T 2qby_A 91 YRVLADLLESLDVKVP---FTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFI 167 (386)
T ss_dssp HHHHHHHTTTTSCCCC---SSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEE
T ss_pred HHHHHHHHHHhCCCCC---CCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEE
Confidence 8888888888865421 1233566666777777653 4899999999652 334444333311 22355677
Q ss_pred EEeCChhh
Q 040110 228 ITVGPHNI 235 (348)
Q Consensus 228 vTTR~~~v 235 (348)
+||+....
T Consensus 168 ~~~~~~~~ 175 (386)
T 2qby_A 168 GITNDVKF 175 (386)
T ss_dssp EEESCGGG
T ss_pred EEECCCCh
Confidence 78877654
No 9
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.03 E-value=2.4e-10 Score=106.16 Aligned_cols=134 Identities=12% Similarity=0.162 Sum_probs=88.7
Q ss_pred cccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCC------CH
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFY------NF 156 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~------~~ 156 (348)
.|+||+.++ +.|.+++. . + +++.|+|++|+|||||++++++. . . .+|+++.... +.
T Consensus 13 ~~~gR~~el---~~L~~~l~----~---~-~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 13 DIFDREEES---RKLEESLE----N---Y-PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGHITR 74 (350)
T ss_dssp GSCSCHHHH---HHHHHHHH----H---C-SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTCBCH
T ss_pred hcCChHHHH---HHHHHHHh----c---C-CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccCCCH
Confidence 899999999 99999887 1 1 58899999999999999999877 2 1 6677664332 56
Q ss_pred HHHHHHHHHHhCCC--------------CCccccCCCCHHHHHHHHHHHhcC-CeEEEEEeCCCChh--------h-HHH
Q 040110 157 KRILDDIMKSLMPT--------------SSWLKIMGKDYKSEKTILRDYLTN-KKYFTVLDDVWIEK--------I-WDD 212 (348)
Q Consensus 157 ~~~~~~i~~~l~~~--------------~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVLDdv~~~~--------~-~~~ 212 (348)
..++..+...+... .........+..++...+.+.+.. ++.+|||||++... . +..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 66677666655420 000011124566677777766653 49999999997643 2 233
Q ss_pred HHhhCCCCCCCcEEEEEeCChhh
Q 040110 213 LREALPDNQIGSRALITVGPHNI 235 (348)
Q Consensus 213 l~~~l~~~~~gskIlvTTR~~~v 235 (348)
+.... ....+.++|+|++...+
T Consensus 155 L~~~~-~~~~~~~~il~g~~~~~ 176 (350)
T 2qen_A 155 FAYAY-DSLPNLKIILTGSEVGL 176 (350)
T ss_dssp HHHHH-HHCTTEEEEEEESSHHH
T ss_pred HHHHH-HhcCCeEEEEECCcHHH
Confidence 32221 11246789999887653
No 10
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.01 E-value=2.3e-09 Score=101.04 Aligned_cols=147 Identities=16% Similarity=0.111 Sum_probs=101.4
Q ss_pred cCcccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcCccccCCc-ceeEEEEeCCCCCHHHH
Q 040110 81 CDALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNNNFVKFYF-DCHAWVRVSNFYNFKRI 159 (348)
Q Consensus 81 ~~~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F-~~~~wv~~~~~~~~~~~ 159 (348)
++.++||+.+. +.+.++|...-.......+.+.|+|++|+|||||++.+++. ..... ...++++++...+...+
T Consensus 16 p~~l~gr~~~~---~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~ 90 (389)
T 1fnn_A 16 PKRLPHREQQL---QQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAI 90 (389)
T ss_dssp CSCCTTCHHHH---HHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHH
T ss_pred CCCCCChHHHH---HHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHH
Confidence 35899999999 99988886210001222347889999999999999999987 33321 24667777777788899
Q ss_pred HHHHHHHhCCCCCccccCCCCHHHHHHHHHHHhc--CCeEEEEEeCCCCh--hhHHHHHhhCCCCC----CCcEEEEEeC
Q 040110 160 LDDIMKSLMPTSSWLKIMGKDYKSEKTILRDYLT--NKKYFTVLDDVWIE--KIWDDLREALPDNQ----IGSRALITVG 231 (348)
Q Consensus 160 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~--~~~~~l~~~l~~~~----~gskIlvTTR 231 (348)
+..++..++.... ....+...+...+...+. +++.+||||+++.. ..+..+...+.... .+..||++|+
T Consensus 91 ~~~l~~~l~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~ 167 (389)
T 1fnn_A 91 IGEIARSLNIPFP---RRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGH 167 (389)
T ss_dssp HHHHHHHTTCCCC---SSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEES
T ss_pred HHHHHHHhCccCC---CCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEEC
Confidence 9999999876421 123456677777777664 56889999999763 45556655553311 3667888887
Q ss_pred Chhh
Q 040110 232 PHNI 235 (348)
Q Consensus 232 ~~~v 235 (348)
....
T Consensus 168 ~~~~ 171 (389)
T 1fnn_A 168 NDAV 171 (389)
T ss_dssp STHH
T ss_pred CchH
Confidence 7643
No 11
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.99 E-value=1.2e-09 Score=101.45 Aligned_cols=135 Identities=13% Similarity=0.114 Sum_probs=83.3
Q ss_pred CcccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCC-----CCH
Q 040110 82 DALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNF-----YNF 156 (348)
Q Consensus 82 ~~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~-----~~~ 156 (348)
+.|+||+.++ +.|.+ +. . +++.|+|++|+|||||++++.+. ... ..+|+++... .+.
T Consensus 13 ~~~~gR~~el---~~L~~-l~----~-----~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~ 74 (357)
T 2fna_A 13 KDFFDREKEI---EKLKG-LR----A-----PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISY 74 (357)
T ss_dssp GGSCCCHHHH---HHHHH-TC----S-----SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCH
T ss_pred HHhcChHHHH---HHHHH-hc----C-----CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCH
Confidence 3899999999 99999 76 1 48999999999999999999887 322 2578876542 344
Q ss_pred HHHHHHHHHHhCC-------------CC-----C--cccc-----CCCCHHHHHHHHHHHhcCCeEEEEEeCCCChh---
Q 040110 157 KRILDDIMKSLMP-------------TS-----S--WLKI-----MGKDYKSEKTILRDYLTNKKYFTVLDDVWIEK--- 208 (348)
Q Consensus 157 ~~~~~~i~~~l~~-------------~~-----~--~~~~-----~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--- 208 (348)
..++..+...+.. .. . .... .......+...+.+..+ ++++|||||++..+
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~ 153 (357)
T 2fna_A 75 KDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLR 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCT
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccC
Confidence 5555554443310 00 0 0000 12345555555554433 49999999997632
Q ss_pred --hHHHHHhhCCCCCCCcEEEEEeCChhh
Q 040110 209 --IWDDLREALPDNQIGSRALITVGPHNI 235 (348)
Q Consensus 209 --~~~~l~~~l~~~~~gskIlvTTR~~~v 235 (348)
++..+...+.....+..+|+|++....
T Consensus 154 ~~~~~~~l~~~~~~~~~~~~i~~g~~~~~ 182 (357)
T 2fna_A 154 GVNLLPALAYAYDNLKRIKFIMSGSEMGL 182 (357)
T ss_dssp TCCCHHHHHHHHHHCTTEEEEEEESSHHH
T ss_pred chhHHHHHHHHHHcCCCeEEEEEcCchHH
Confidence 222222222221236789999998653
No 12
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.88 E-value=1.1e-08 Score=89.23 Aligned_cols=204 Identities=12% Similarity=0.085 Sum_probs=103.2
Q ss_pred cccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCCHHHHHHH
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYNFKRILDD 162 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 162 (348)
.++||+..+ +.+..++.. + .....+.|+|++|+||||||+.+++.......+.. ........ ...
T Consensus 24 ~~~g~~~~~---~~l~~~l~~----~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~-~~~ 88 (250)
T 1njg_A 24 DVVGQEHVL---TALANGLSL----G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDN-CRE 88 (250)
T ss_dssp GCCSCHHHH---HHHHHHHHH----T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHH-HHH
T ss_pred HHhCcHHHH---HHHHHHHHc----C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHH-HHH
Confidence 799999999 999988872 1 12347889999999999999999876321111100 00000000 001
Q ss_pred HHHHhCCCCCccccCC-CCHHHHHHHHHHHh-----cCCeEEEEEeCCCC--hhhHHHHHhhCCCCCCCcEEEEEeCChh
Q 040110 163 IMKSLMPTSSWLKIMG-KDYKSEKTILRDYL-----TNKKYFTVLDDVWI--EKIWDDLREALPDNQIGSRALITVGPHN 234 (348)
Q Consensus 163 i~~~l~~~~~~~~~~~-~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~--~~~~~~l~~~l~~~~~gskIlvTTR~~~ 234 (348)
+............... .....+ ..+.+.+ .+++.+||+||++. ...++.+...+.....+..+|+||+...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 89 IEQGRFVDLIEIDAASRTKVEDT-RDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp HHTTCCSSEEEEETTCGGGHHHH-HHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred HhccCCcceEEecCcccccHHHH-HHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 1100000000000000 111112 2222222 34679999999965 3566777666654455778888887654
Q ss_pred hhhh--------cccCCCCcCCCCcccccCccccCCHHHHHHHHHHhCCCCCCCCCCCcchhccc-cccCCCChhHHHHH
Q 040110 235 ILTS--------IELENGEKNRHDSALVGGPLIRIKHETWQFFILHYGSTPLENETEGPSVGLKL-VSLSELPFPLIVCC 305 (348)
Q Consensus 235 v~~~--------~~l~~~~C~Lp~~~~ig~~L~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~l-~s~~~Lp~~lk~cf 305 (348)
.... +.++ .+.. .+.++.+...+......-+ ......| ....+.|..+....
T Consensus 168 ~~~~~l~~r~~~i~l~--------------~l~~--~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~~~~~~~~ 228 (250)
T 1njg_A 168 KLPVTILSRCLQFHLK--------------ALDV--EQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLT 228 (250)
T ss_dssp GSCHHHHTTSEEEECC--------------CCCH--HHHHHHHHHHHHHTTCCBC---HHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCCHHHHHHhhhccCC--------------CCCH--HHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 2221 2333 3333 3444433333322101111 2233566 55577887776665
Q ss_pred hHhccCCCCceecHHHH
Q 040110 306 LYFCVFPTDIELTTRQL 322 (348)
Q Consensus 306 ~y~a~fp~~~~i~~~~L 322 (348)
..+..+-.+ .|+.+.+
T Consensus 229 ~~~~~~~~~-~i~~~~v 244 (250)
T 1njg_A 229 DQAIASGDG-QVSTQAV 244 (250)
T ss_dssp HHHHTTTTS-SBCHHHH
T ss_pred HHHHhccCc-eecHHHH
Confidence 555555443 5665554
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.75 E-value=2.6e-08 Score=85.73 Aligned_cols=123 Identities=13% Similarity=0.054 Sum_probs=73.9
Q ss_pred cccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcCccccCCcc-eeEEEEeCCCCCHHHHHH
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNNNFVKFYFD-CHAWVRVSNFYNFKRILD 161 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~ 161 (348)
.++|++... +.+.+++. .. ....+.|+|++|+|||+||+.+++... ...+. ..+.+..+.......+..
T Consensus 18 ~~~g~~~~~---~~l~~~l~----~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 87 (226)
T 2chg_A 18 EVVGQDEVI---QRLKGYVE----RK--NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRH 87 (226)
T ss_dssp GCCSCHHHH---HHHHHHHH----TT--CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHH
T ss_pred HHcCcHHHH---HHHHHHHh----CC--CCCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHH
Confidence 799999999 99999987 22 222378999999999999999987621 11122 233344333333322222
Q ss_pred HHHHHhCCCCCccccCCCCHHHHHHHHHHHhcCCeEEEEEeCCCCh--hhHHHHHhhCCCCCCCcEEEEEeCChh
Q 040110 162 DIMKSLMPTSSWLKIMGKDYKSEKTILRDYLTNKKYFTVLDDVWIE--KIWDDLREALPDNQIGSRALITVGPHN 234 (348)
Q Consensus 162 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gskIlvTTR~~~ 234 (348)
.+........ ...+++.+||+||++.. ...+.+...+.....++++|+||+...
T Consensus 88 ~~~~~~~~~~-------------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 88 KIKEFARTAP-------------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp HHHHHHTSCC-------------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred HHHHHhcccC-------------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 2211111100 01257899999999764 344555544443445678888887654
No 14
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.49 E-value=1e-07 Score=87.29 Aligned_cols=121 Identities=15% Similarity=0.102 Sum_probs=71.7
Q ss_pred cccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcCccccC-Ccc-eeEEEEeCCCCCHHHHH
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNNNFVKF-YFD-CHAWVRVSNFYNFKRIL 160 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~-~F~-~~~wv~~~~~~~~~~~~ 160 (348)
.++|++... +.+.+++. .+ ....+.++|++|+||||+|+.+++. ... .+. ..++++.+....... +
T Consensus 22 ~~~g~~~~~---~~l~~~l~----~~--~~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~-i 89 (323)
T 1sxj_B 22 DIVGNKETI---DRLQQIAK----DG--NMPHMIISGMPGIGKTTSVHCLAHE--LLGRSYADGVLELNASDDRGIDV-V 89 (323)
T ss_dssp GCCSCTHHH---HHHHHHHH----SC--CCCCEEEECSTTSSHHHHHHHHHHH--HHGGGHHHHEEEECTTSCCSHHH-H
T ss_pred HHHCCHHHH---HHHHHHHH----cC--CCCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCCEEEecCccccChHH-H
Confidence 799999999 99999887 22 2222789999999999999999877 321 121 233444333223222 2
Q ss_pred HHHHHHhCCCCCccccCCCCHHHHHHHHHHHh-cCCeEEEEEeCCCCh--hhHHHHHhhCCCCCCCcEEEEEeCCh
Q 040110 161 DDIMKSLMPTSSWLKIMGKDYKSEKTILRDYL-TNKKYFTVLDDVWIE--KIWDDLREALPDNQIGSRALITVGPH 233 (348)
Q Consensus 161 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gskIlvTTR~~ 233 (348)
++++..+.... ..+ .+++.++|+||++.. ..++.+...+.....++.+|+||+..
T Consensus 90 ~~~~~~~~~~~------------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~ 147 (323)
T 1sxj_B 90 RNQIKHFAQKK------------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQS 147 (323)
T ss_dssp HTHHHHHHHBC------------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCG
T ss_pred HHHHHHHHhcc------------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCCh
Confidence 22222221000 001 346899999999763 34444444443334567888888664
No 15
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.47 E-value=1.2e-07 Score=79.46 Aligned_cols=44 Identities=23% Similarity=0.336 Sum_probs=37.8
Q ss_pred cccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++||+..+ +.+.+.+. ......+.|+|++|+|||+||+.+++.
T Consensus 23 ~~~g~~~~~---~~l~~~l~------~~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 23 PVIGRDEEI---RRTIQVLQ------RRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCSCHHHH---HHHHHHHT------SSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccchHHH---HHHHHHHh------cCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 799999999 99999988 233445789999999999999999876
No 16
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.43 E-value=4.6e-07 Score=83.29 Aligned_cols=116 Identities=7% Similarity=0.054 Sum_probs=76.7
Q ss_pred cccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcCccccC------CcceeEEEEeCCCCCH
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNNNFVKF------YFDCHAWVRVSNFYNF 156 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~------~F~~~~wv~~~~~~~~ 156 (348)
.+.||+++. +.|...|.+. -.......+.|+|++|+|||++++.+++...... .| ..+.++...-.+.
T Consensus 21 ~L~~Re~E~---~~i~~~L~~~--i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~ 94 (318)
T 3te6_A 21 LLKSQVEDF---TRIFLPIYDS--LMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGM 94 (318)
T ss_dssp HHHHHHHHH---HHHHHHHHHH--HHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--
T ss_pred ccCCHHHHH---HHHHHHHHHH--hcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCH
Confidence 588999999 9998888621 1133455778999999999999999998732111 12 3556776677788
Q ss_pred HHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHH--hcCCeEEEEEeCCCCh
Q 040110 157 KRILDDIMKSLMPTSSWLKIMGKDYKSEKTILRDY--LTNKKYFTVLDDVWIE 207 (348)
Q Consensus 157 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~--L~~kr~LlVLDdv~~~ 207 (348)
..++..|++++..... ........+...+... -.+++++++||+++..
T Consensus 95 ~~~~~~I~~~L~g~~~---~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l 144 (318)
T 3te6_A 95 DALYEKIWFAISKENL---CGDISLEALNFYITNVPKAKKRKTLILIQNPENL 144 (318)
T ss_dssp HHHHHHHHHHHSCCC-----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSS
T ss_pred HHHHHHHHHHhcCCCC---CchHHHHHHHHHHHHhhhccCCceEEEEecHHHh
Confidence 8999999999965421 1122333333333332 2456899999999764
No 17
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.24 E-value=3.8e-07 Score=83.63 Aligned_cols=122 Identities=11% Similarity=0.098 Sum_probs=70.6
Q ss_pred cccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcCccccCC-cc-eeEEEEeCCCCCHHHHH
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNNNFVKFY-FD-CHAWVRVSNFYNFKRIL 160 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~-F~-~~~wv~~~~~~~~~~~~ 160 (348)
.++|++..+ +.+.+++. . .....+.++|++|+||||+|+.+++. .... +. ..+.+..+..... ..+
T Consensus 26 ~~~g~~~~~---~~l~~~l~----~--~~~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~-~~~ 93 (327)
T 1iqp_A 26 DIVGQEHIV---KRLKHYVK----T--GSMPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNASDERGI-NVI 93 (327)
T ss_dssp TCCSCHHHH---HHHHHHHH----H--TCCCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETTCHHHH-HTT
T ss_pred HhhCCHHHH---HHHHHHHH----c--CCCCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeeccccCch-HHH
Confidence 799999999 99998887 2 22334789999999999999999876 3211 11 1223332221111 101
Q ss_pred HHHHHHhCCCCCccccCCCCHHHHHHHHHHHhcCCeEEEEEeCCCCh--hhHHHHHhhCCCCCCCcEEEEEeCChh
Q 040110 161 DDIMKSLMPTSSWLKIMGKDYKSEKTILRDYLTNKKYFTVLDDVWIE--KIWDDLREALPDNQIGSRALITVGPHN 234 (348)
Q Consensus 161 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gskIlvTTR~~~ 234 (348)
...+..+... .....+++.++|+|+++.. ...+.+...+.....++++|+||....
T Consensus 94 ~~~~~~~~~~------------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 94 REKVKEFART------------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSS 151 (327)
T ss_dssp HHHHHHHHHS------------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred HHHHHHHHhh------------------CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCcc
Confidence 1111111000 0001256889999999753 455556555544445678888887643
No 18
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.21 E-value=6.8e-07 Score=74.64 Aligned_cols=44 Identities=25% Similarity=0.330 Sum_probs=37.5
Q ss_pred cccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++||+.++ +.+.+.+. ......+.|+|++|+|||+||+.+++.
T Consensus 23 ~~~g~~~~~---~~l~~~l~------~~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 23 PVIGRDTEI---RRAIQILS------RRTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCSCHHHH---HHHHHHHT------SSSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred hhhcchHHH---HHHHHHHh------CCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 799999999 99999988 233445679999999999999999876
No 19
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.10 E-value=3.7e-06 Score=76.66 Aligned_cols=120 Identities=13% Similarity=0.064 Sum_probs=71.6
Q ss_pred cccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcCccccCCcc-eeEEEEeCCCCCHHHHHH
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNNNFVKFYFD-CHAWVRVSNFYNFKRILD 161 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~ 161 (348)
.++|++... +.+.+++. .+ ....+.++|++|+|||++|+.+++... ...+. ..+.++.+.....
T Consensus 18 ~~~g~~~~~---~~l~~~l~----~~--~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~----- 82 (319)
T 2chq_A 18 EVVGQDEVI---QRLKGYVE----RK--NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGI----- 82 (319)
T ss_dssp GSCSCHHHH---HHHHTTTT----TT--CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCT-----
T ss_pred HHhCCHHHH---HHHHHHHh----CC--CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccCh-----
Confidence 799999999 99999887 22 222378899999999999999987621 11111 1223333321110
Q ss_pred HHHHHhCCCCCccccCCCCHHHHHHHHHHH--h-cCCeEEEEEeCCCCh--hhHHHHHhhCCCCCCCcEEEEEeCChh
Q 040110 162 DIMKSLMPTSSWLKIMGKDYKSEKTILRDY--L-TNKKYFTVLDDVWIE--KIWDDLREALPDNQIGSRALITVGPHN 234 (348)
Q Consensus 162 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~--L-~~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gskIlvTTR~~~ 234 (348)
....+....+... + .+++.++|+|++... ...+.+...+.....++++|+||....
T Consensus 83 -----------------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 83 -----------------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (319)
T ss_dssp -----------------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGG
T ss_pred -----------------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 0111111111111 1 256889999999653 445666666655455677888776543
No 20
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.09 E-value=6.9e-06 Score=73.92 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=36.9
Q ss_pred cccccccccccHHHHHhhcCCCCCC-------CCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSGL-------GQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|.+..+ +.|.+.+...-.. +-....-+.|+|++|+|||+||+.+++.
T Consensus 18 ~i~G~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 18 DIGGLEKQM---QEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp GSCSCHHHH---HHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred HhcCHHHHH---HHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 899999999 8888777410000 0123445789999999999999999887
No 21
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.02 E-value=7.1e-06 Score=66.38 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=32.7
Q ss_pred cccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|+...+ +++.+.+... ..... -|.|+|.+|+|||++|+.+++.
T Consensus 2 ~iiG~s~~~---~~~~~~~~~~---a~~~~-~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSEWI---NQYRRRLQQL---SETDI-AVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSHHH---HHHHHHHHHH---TTCCS-CEEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCHHH---HHHHHHHHHH---hCCCC-CEEEECCCCCCHHHHHHHHHHh
Confidence 478888888 7777766411 01122 3669999999999999999886
No 22
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.97 E-value=3.4e-06 Score=76.84 Aligned_cols=50 Identities=14% Similarity=0.132 Sum_probs=33.9
Q ss_pred cccccccccccHHHHHhhcCCC---------CCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPS---------SGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~---------~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|.+..+ +.|.+++... .-........+.|+|++|+|||++|+.+++.
T Consensus 32 ~i~G~~~~~---~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 32 ELIGLKPVK---DRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp HSSSCHHHH---HHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred HccChHHHH---HHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 488988888 6666554200 0001233446789999999999999988766
No 23
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.97 E-value=1.5e-05 Score=70.65 Aligned_cols=50 Identities=16% Similarity=0.248 Sum_probs=33.5
Q ss_pred cccccccccccHHHHHhhc---CCCC---CCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRL---PPSS---GLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L---~~~~---~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
+++|.+..+ +.+.+++ ..+. ..+-...+-+.|+|++|+|||++|+.+++.
T Consensus 7 ~i~G~~~~~---~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 7 DVAGMHEAK---LEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp SSCSCHHHH---HHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HhCCHHHHH---HHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 688888888 5554433 2110 011133445779999999999999999986
No 24
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.96 E-value=1.4e-05 Score=74.63 Aligned_cols=45 Identities=24% Similarity=0.397 Sum_probs=36.7
Q ss_pred cccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|++..+ +.+...+. .+. ....+.|+|++|+||||+|+.+++.
T Consensus 17 ~~vg~~~~~---~~L~~~l~----~~~-~~~~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 17 DVVGQEHVL---TALANGLS----LGR-IHHAYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp TSCSCHHHH---HHHHHHHH----HTC-CCSEEEEESCTTSSHHHHHHHHHHH
T ss_pred hccCcHHHH---HHHHHHHH----hCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 699999999 99988886 212 2236779999999999999999876
No 25
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.93 E-value=6e-06 Score=69.17 Aligned_cols=101 Identities=14% Similarity=0.081 Sum_probs=55.6
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHH
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYNFKRILDDIMKSLMPTSSWLKIMGKDYKSEKTILRDY 191 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 191 (348)
...+.|+|++|+||||||+.+++.......+. ++++ +..++...+...+.... . ......+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~------~~~~~~~~~~~~~~~~~-------~--~~~~~~~--- 98 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFF------DTKDLIFRLKHLMDEGK-------D--TKFLKTV--- 98 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEE------EHHHHHHHHHHHHHHTC-------C--SHHHHHH---
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEE------EHHHHHHHHHHHhcCch-------H--HHHHHHh---
Confidence 45789999999999999999988732122222 2333 34555555554443220 0 1222222
Q ss_pred hcCCeEEEEEeCCCC--hhhHH--HHHhhCCC-CCCCcEEEEEeCCh
Q 040110 192 LTNKKYFTVLDDVWI--EKIWD--DLREALPD-NQIGSRALITVGPH 233 (348)
Q Consensus 192 L~~kr~LlVLDdv~~--~~~~~--~l~~~l~~-~~~gskIlvTTR~~ 233 (348)
. +.-+||||++.. .+.|. .+...+.. ...|..+|+||...
T Consensus 99 -~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 99 -L-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp -H-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred -c-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 2 456899999973 23332 22221111 12356788888654
No 26
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.86 E-value=2.4e-05 Score=72.39 Aligned_cols=44 Identities=11% Similarity=0.118 Sum_probs=36.8
Q ss_pred cccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|++..+ +.+..++. .+... .+.++|++|+||||+|+.+++.
T Consensus 38 ~i~g~~~~~---~~l~~~l~----~~~~~--~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 38 EVTAQDHAV---TVLKKTLK----SANLP--HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp TCCSCCTTH---HHHHHHTT----CTTCC--CEEEECSTTSSHHHHHHHHHHH
T ss_pred HhhCCHHHH---HHHHHHHh----cCCCC--EEEEECCCCCCHHHHHHHHHHH
Confidence 799999999 99999988 22222 2789999999999999999877
No 27
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.85 E-value=1e-05 Score=68.98 Aligned_cols=72 Identities=19% Similarity=0.158 Sum_probs=42.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHHh
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYNFKRILDDIMKSLMPTSSWLKIMGKDYKSEKTILRDYL 192 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L 192 (348)
..+.|+|++|+|||+||+.+++. .......++++++ ..+...+...+... ........+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~~~---------~~~~~~~~~~--- 114 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYV------PELFRELKHSLQDQ---------TMNEKLDYIK--- 114 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEH------HHHHHHHHHC---C---------CCHHHHHHHH---
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEh------HHHHHHHHHHhccc---------hHHHHHHHhc---
Confidence 56789999999999999999987 3333334556643 34445544433211 1233333332
Q ss_pred cCCeEEEEEeCCCC
Q 040110 193 TNKKYFTVLDDVWI 206 (348)
Q Consensus 193 ~~kr~LlVLDdv~~ 206 (348)
. .-+|||||++.
T Consensus 115 -~-~~~lilDei~~ 126 (202)
T 2w58_A 115 -K-VPVLMLDDLGA 126 (202)
T ss_dssp -H-SSEEEEEEECC
T ss_pred -C-CCEEEEcCCCC
Confidence 2 23999999954
No 28
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.84 E-value=3.6e-05 Score=70.80 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=36.7
Q ss_pred cccccccccccHHHHHhhcCC----C--CCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPP----S--SGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~----~--~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|.+..+ +.|.+.+.- + -.......+-+.++|++|+|||+||+.+++.
T Consensus 19 di~G~~~~~---~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 19 DVAGLEGAK---EALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp GSCSCHHHH---HHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred HhcChHHHH---HHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 789999999 888777610 0 0012233456789999999999999999887
No 29
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.84 E-value=2.9e-05 Score=71.26 Aligned_cols=118 Identities=13% Similarity=0.130 Sum_probs=69.8
Q ss_pred cccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCCHHHHHHH
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYNFKRILDD 162 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 162 (348)
.++|.+... +.+.+++. .+ ....++.+.|++|+|||++|+.+++. .. ...+.++.+. .... .+..
T Consensus 27 ~ivg~~~~~---~~l~~~l~----~~-~~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~-~~~~-~i~~ 91 (324)
T 3u61_B 27 ECILPAFDK---ETFKSITS----KG-KIPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSD-CKID-FVRG 91 (324)
T ss_dssp TSCCCHHHH---HHHHHHHH----TT-CCCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTT-CCHH-HHHT
T ss_pred HHhCcHHHH---HHHHHHHH----cC-CCCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEcccc-cCHH-HHHH
Confidence 799999999 99998887 22 23346778899999999999999877 32 1233444332 2222 2222
Q ss_pred HHHHhCCCCCccccCCCCHHHHHHHHHHHhcCCeEEEEEeCCCChh---hHHHHHhhCCCCCCCcEEEEEeCChh
Q 040110 163 IMKSLMPTSSWLKIMGKDYKSEKTILRDYLTNKKYFTVLDDVWIEK---IWDDLREALPDNQIGSRALITVGPHN 234 (348)
Q Consensus 163 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---~~~~l~~~l~~~~~gskIlvTTR~~~ 234 (348)
++..+.... ...+++.++++|++.... ..+.+...+.....+.++|+||....
T Consensus 92 ~~~~~~~~~-------------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 92 PLTNFASAA-------------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp HHHHHHHBC-------------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred HHHHHHhhc-------------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 221111000 012368899999998643 44444444332223567777776644
No 30
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.79 E-value=0.0001 Score=68.36 Aligned_cols=44 Identities=11% Similarity=0.043 Sum_probs=35.5
Q ss_pred cccccccccccHHHHHhhc-CCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRL-PPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L-~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|.+... +.+.+++ . .+. ... +.|+|+.|+||||+|+.+++.
T Consensus 15 ~~vg~~~~~---~~l~~~~~~----~~~-~~~-~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 15 ALSHNEELT---NFLKSLSDQ----PRD-LPH-LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp GCCSCHHHH---HHHHTTTTC----TTC-CCC-EEEECSTTSSHHHHHHTHHHH
T ss_pred HhcCCHHHH---HHHHHHHhh----CCC-CCe-EEEECCCCCCHHHHHHHHHHH
Confidence 789999999 9999988 4 222 223 789999999999999988773
No 31
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.78 E-value=0.0002 Score=65.81 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=35.0
Q ss_pred cccccccccccHHHHHhhcCC----CC--CCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPP----SS--GLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~----~~--~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
+++|.+..+ +.|.+.+.- +. .......+-+.++|++|+|||+||+.+++.
T Consensus 13 di~G~~~~k---~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 13 DVAGLEGAK---EALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp GSCSCHHHH---HHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HhcCHHHHH---HHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 788888888 666655410 00 011223456789999999999999999987
No 32
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.76 E-value=0.00014 Score=65.68 Aligned_cols=50 Identities=14% Similarity=0.114 Sum_probs=36.5
Q ss_pred cccccccccccHHHHHhhcCCCC------CCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSS------GLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~------~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|.+..+ +.+.+.+..+. .........+.|+|++|+||||+|+.+++.
T Consensus 22 ~i~G~~~~~---~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 22 DIAGQDVAK---QALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp GSCCCHHHH---HHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HhCChHHHH---HHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 799999999 88877763100 000123456789999999999999999987
No 33
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.73 E-value=3.2e-05 Score=69.17 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=33.5
Q ss_pred cccccccccccHHHHHh-------hcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQ-------RLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~-------~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|..... +.+.. .+.. ........+.|+|++|+|||+||+.+++.
T Consensus 34 ~~i~~~~~~---~~i~~~~~~l~~~l~~---~~~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 34 GIIKWGDPV---TRVLDDGELLVQQTKN---SDRTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CCCCCSHHH---HHHHHHHHHHHHHHHH---CSSCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCccHHH---HHHHHHHHHHHHHHhc---cCCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 677877766 55555 2320 11345567889999999999999999986
No 34
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.73 E-value=4.3e-05 Score=71.39 Aligned_cols=50 Identities=10% Similarity=0.050 Sum_probs=36.6
Q ss_pred cccccccccccHHHHHhhcCC----CC--CCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPP----SS--GLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~----~~--~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|.+..+ +.|.+.+.. +. .......+.+.|+|++|+|||+||+.+++.
T Consensus 85 ~i~G~~~~~---~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 85 DIAGVEFAK---ATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp GSCSCHHHH---HHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred HhCChHHHH---HHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 799999999 887776631 00 001123456789999999999999999876
No 35
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.72 E-value=7.9e-05 Score=69.45 Aligned_cols=49 Identities=18% Similarity=0.158 Sum_probs=35.7
Q ss_pred cccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|++.....+..+.+.+. .+......+.|+|++|+|||++|+.+++.
T Consensus 45 ~ivG~~~~~~~l~~l~~~~~----~~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 45 GMVGQLAARRAAGVVLEMIR----EGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp TEESCHHHHHHHHHHHHHHH----TTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hccChHHHHHHHHHHHHHHH----cCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 79999998722233555555 22223357789999999999999999987
No 36
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.72 E-value=0.00013 Score=68.80 Aligned_cols=50 Identities=12% Similarity=0.086 Sum_probs=36.6
Q ss_pred cccccccccccHHHHHhhcCCC----C--CCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPS----S--GLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|.+..+ +.|.+.+..+ . .......+-+.|+|++|+|||+||+.+++.
T Consensus 116 ~iiG~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 116 DIAGQDLAK---QALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp GSCSCHHHH---HHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred HhCCHHHHH---HHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 799999999 8888877210 0 000122356789999999999999999876
No 37
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.67 E-value=1.4e-05 Score=64.57 Aligned_cols=46 Identities=17% Similarity=0.204 Sum_probs=31.5
Q ss_pred cccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|+...+ +++.+.+... ..... -|.|+|.+|+|||++|+.+++.
T Consensus 5 ~~iG~s~~~---~~l~~~~~~~---~~~~~-~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 5 DKLGNSAAI---QEMNREVEAA---AKRTS-PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ---CCCHHH---HHHHHHHHHH---HTCSS-CEEEEEETTCCHHHHHGGGCCT
T ss_pred CceeCCHHH---HHHHHHHHHH---hCCCC-cEEEECCCCccHHHHHHHHHHh
Confidence 678988888 7777766411 01122 3668999999999999999877
No 38
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.62 E-value=0.00017 Score=67.26 Aligned_cols=50 Identities=14% Similarity=0.172 Sum_probs=36.0
Q ss_pred cccccccccccHHHHHhhcCC----CC--CCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPP----SS--GLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~----~~--~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|.+..+ +.|.+.+.. +. .......+-+.|+|++|+|||+||+.+++.
T Consensus 52 di~G~~~~~---~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 52 DVAGLEGAK---EALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp GSCCGGGHH---HHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred HhCCHHHHH---HHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 799999999 888776620 00 011122344778999999999999999987
No 39
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.61 E-value=5.7e-05 Score=72.64 Aligned_cols=100 Identities=18% Similarity=0.222 Sum_probs=58.6
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcCccccCCcc--eeEEEEeCCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHH
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNNNFVKFYFD--CHAWVRVSNFYNFKRILDDIMKSLMPTSSWLKIMGKDYKSEKTILR 189 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 189 (348)
...+.|+|++|+||||||+.+++. ....|+ ..++++ ...+...+...+... .. ..+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~------~~~~~~~~~~~~~~~---------~~----~~~~ 188 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYIT------SEKFLNDLVDSMKEG---------KL----NEFR 188 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEE------HHHHHHHHHHHHHTT---------CH----HHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEee------HHHHHHHHHHHHHcc---------cH----HHHH
Confidence 456789999999999999999987 433332 234443 233445555544332 11 2233
Q ss_pred HHhcCCeEEEEEeCCCChh----hHHHHHhhCCC-CCCCcEEEEEeCC
Q 040110 190 DYLTNKKYFTVLDDVWIEK----IWDDLREALPD-NQIGSRALITVGP 232 (348)
Q Consensus 190 ~~L~~kr~LlVLDdv~~~~----~~~~l~~~l~~-~~~gskIlvTTR~ 232 (348)
..+..+.-+|+|||+.... ..+.+...+.. ...|..||+||.+
T Consensus 189 ~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 189 EKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp HHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred HHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4444467799999996431 22333332211 1346778888876
No 40
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.58 E-value=0.00012 Score=64.70 Aligned_cols=53 Identities=23% Similarity=0.232 Sum_probs=33.0
Q ss_pred cccccccccccHHHHHhhcCCCC---CCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSS---GLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
+++|.+..+..+.+++.++..+. ..+....+-+.|+|++|+||||||+.+++.
T Consensus 13 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 13 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp GSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 78898877722234444432110 001112334779999999999999999876
No 41
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.58 E-value=0.00019 Score=61.49 Aligned_cols=89 Identities=11% Similarity=0.029 Sum_probs=53.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc-------cc-cCCCCHHH
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYNFKRILDDIMKSLMPTSSW-------LK-IMGKDYKS 183 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~-~~~~~~~~ 183 (348)
-.++.|+|.+|+|||||+..++. . .-..++|++....++...+.. +...++..... .. ....+..+
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~----~-~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL----L-SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH----H-HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH----H-cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 34889999999999999999987 1 113577887766556655443 33333321000 01 11112234
Q ss_pred HHHHHHHHhcCCeEEEEEeCCCC
Q 040110 184 EKTILRDYLTNKKYFTVLDDVWI 206 (348)
Q Consensus 184 ~~~~l~~~L~~kr~LlVLDdv~~ 206 (348)
....++..++.+.-++|+|.+..
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcHH
Confidence 55555555544578999999864
No 42
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.58 E-value=1.4e-05 Score=69.55 Aligned_cols=61 Identities=3% Similarity=-0.063 Sum_probs=36.0
Q ss_pred cccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVS 151 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~ 151 (348)
.|+|.+......+.+..++. ......+.|+|++|+||||||+.+++. .......+.+++.+
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~------~~~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAAS------GDGVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLG 89 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHH------TCSCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGG
T ss_pred hccCCCCCHHHHHHHHHHHh------CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHH
Confidence 67874321101145555444 123456789999999999999999877 32222345566543
No 43
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.58 E-value=3.8e-05 Score=70.25 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=36.1
Q ss_pred cccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|++..+ +.+..++.... ........+.|+|++|+|||++|+.+++.
T Consensus 13 ~~ig~~~~~---~~l~~~l~~~~-~~~~~~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 13 EYIGQERLK---QKLRVYLEAAK-ARKEPLEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp TCCSCHHHH---HHHHHHHHHHH-HHCSCCCCCEEECCTTCCCHHHHHHHHHH
T ss_pred HhhCHHHHH---HHHHHHHHHHH-ccCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 799999998 77777764110 00122345778999999999999999876
No 44
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.53 E-value=0.00023 Score=68.51 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=36.2
Q ss_pred cccccccccccHHHHHhhcCC----CC--CCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPP----SS--GLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~----~~--~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|.+... +.|.+.+.. +. .......+-+.|+|++|+|||+||+.+++.
T Consensus 135 di~G~~~~k---~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 135 DVAGLEGAK---EALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp GSCSCHHHH---HHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HhcCHHHHH---HHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 789999988 777776520 00 001123456789999999999999999987
No 45
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.52 E-value=0.00028 Score=64.15 Aligned_cols=50 Identities=24% Similarity=0.276 Sum_probs=35.5
Q ss_pred cccccccccccHHHHHhhcCCC-------CCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPS-------SGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~-------~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|.+..+ +.|.+++..+ ...+-...+.+.|+|++|+|||+||+.+++.
T Consensus 16 di~G~~~~~---~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 16 DIGGLEDVK---RELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp GSCSCHHHH---HHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HhCCHHHHH---HHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 788988888 7666655310 0001123456789999999999999999987
No 46
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.52 E-value=0.00013 Score=67.28 Aligned_cols=49 Identities=18% Similarity=0.216 Sum_probs=37.1
Q ss_pred cccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|++..+ +.+..++.... ........+.|+|++|+|||+||+.+++.
T Consensus 30 ~iiG~~~~~---~~l~~~l~~~~-~~~~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 30 GYIGQESIK---KNLNVFIAAAK-KRNECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp GCCSCHHHH---HHHHHHHHHHH-HTTSCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HhCChHHHH---HHHHHHHHHHH-hcCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 799999999 88888775210 01223345789999999999999999877
No 47
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.49 E-value=0.00012 Score=67.14 Aligned_cols=99 Identities=12% Similarity=0.108 Sum_probs=52.8
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHH
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYNFKRILDDIMKSLMPTSSWLKIMGKDYKSEKTILRDY 191 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 191 (348)
...+.|+|++|+||||||+.+++..... .+ ..++++ ...+...+...+... .... +...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~-~~-~~~~i~------~~~~~~~~~~~~~~~---------~~~~----~~~~ 95 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR-GY-RVIYSS------ADDFAQAMVEHLKKG---------TINE----FRNM 95 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT-TC-CEEEEE------HHHHHHHHHHHHHHT---------CHHH----HHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEEE------HHHHHHHHHHHHHcC---------cHHH----HHHH
Confidence 3457799999999999999999862111 11 234443 233444444433211 1122 2222
Q ss_pred hcCCeEEEEEeCCCChh----hHHHHHhhCCC-CCCCcEEEEEeCC
Q 040110 192 LTNKKYFTVLDDVWIEK----IWDDLREALPD-NQIGSRALITVGP 232 (348)
Q Consensus 192 L~~kr~LlVLDdv~~~~----~~~~l~~~l~~-~~~gskIlvTTR~ 232 (348)
+. +..+|+||++.... ..+.+...+.. ...+..||+||.+
T Consensus 96 ~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 96 YK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp HH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred hc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 22 36799999996532 12233222211 1235578887754
No 48
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.43 E-value=0.00048 Score=62.78 Aligned_cols=112 Identities=7% Similarity=-0.048 Sum_probs=65.0
Q ss_pred HHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcCc-cccCCcceeEEEEeCC-CCCHHHHHHHHHHHhCCCCC
Q 040110 95 RNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNNN-FVKFYFDCHAWVRVSN-FYNFKRILDDIMKSLMPTSS 172 (348)
Q Consensus 95 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~-~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~ 172 (348)
+.|.+.+. .+. .....++|+.|+||||+|..+.+.. ...........+..+. ...+.. .+++...+....
T Consensus 7 ~~L~~~i~----~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~~~~~p- 78 (305)
T 2gno_A 7 ETLKRIIE----KSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDFLNYSP- 78 (305)
T ss_dssp HHHHHHHH----TCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHHHTSCC-
T ss_pred HHHHHHHH----CCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHHHhhcc-
Confidence 66666666 222 5678899999999999999997641 1111122334554432 233322 233444443210
Q ss_pred ccccCCCCHHHHHHHHHHHhcCCeEEEEEeCCCC--hhhHHHHHhhCCCCCCCcEEEEEeCCh
Q 040110 173 WLKIMGKDYKSEKTILRDYLTNKKYFTVLDDVWI--EKIWDDLREALPDNQIGSRALITVGPH 233 (348)
Q Consensus 173 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~--~~~~~~l~~~l~~~~~gskIlvTTR~~ 233 (348)
..+++-++|+|++.. ....+.+...+-...+.+.+|++|.+.
T Consensus 79 -------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~ 122 (305)
T 2gno_A 79 -------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRW 122 (305)
T ss_dssp -------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCG
T ss_pred -------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECCh
Confidence 124577889999975 355666766665444567777766543
No 49
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.43 E-value=0.0002 Score=70.29 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=38.6
Q ss_pred cccccccccccHHHHHhhcCCC-----------CCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPS-----------SGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~-----------~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|++... +.+.++|... ...+....+.+.|+|++|+||||+|+.+++.
T Consensus 40 dliG~~~~~---~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 40 QVCGNKGSV---MKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp GCCSCHHHH---HHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HhcCCHHHH---HHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 799999999 9999888620 0001123467889999999999999999987
No 50
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.41 E-value=0.00019 Score=66.40 Aligned_cols=44 Identities=14% Similarity=0.183 Sum_probs=34.6
Q ss_pred cccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|.+..+ +.|...+. .+ ....+.++|++|+||||+|+.+++.
T Consensus 26 ~~~g~~~~~---~~L~~~i~----~g--~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 26 EVYGQNEVI---TTVRKFVD----EG--KLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp GCCSCHHHH---HHHHHHHH----TT--CCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HhcCcHHHH---HHHHHHHh----cC--CCceEEEECCCCCCHHHHHHHHHHH
Confidence 678888888 88887777 22 2222788999999999999999876
No 51
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.40 E-value=0.00045 Score=62.56 Aligned_cols=26 Identities=12% Similarity=0.245 Sum_probs=22.8
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..++.+.++|++|+|||+||+.+++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44567888999999999999999987
No 52
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.37 E-value=0.00017 Score=69.89 Aligned_cols=44 Identities=20% Similarity=0.318 Sum_probs=36.3
Q ss_pred cccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++||+.++ +.+.+.|. . ....-+.++|++|+|||++|+.+++.
T Consensus 181 ~iiGr~~~i---~~l~~~l~----r--~~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 181 PVIGRSKEI---QRVIEVLS----R--RTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CCCCCHHHH---HHHHHHHH----C--SSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CccCcHHHH---HHHHHHHh----c--cCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 689999999 99999986 1 22234568999999999999999876
No 53
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.36 E-value=0.00045 Score=56.00 Aligned_cols=36 Identities=11% Similarity=0.078 Sum_probs=26.9
Q ss_pred HHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 95 RNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 95 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
+.++..|.. - .-..++|+|+.|+|||||++.+++..
T Consensus 25 ~~~~~~l~~----~--~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 25 AELVYVLRH----K--HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp HHHHHHCCC----C--CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHh----c--CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 445555651 1 33478899999999999999998863
No 54
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.35 E-value=0.0002 Score=63.57 Aligned_cols=46 Identities=20% Similarity=0.233 Sum_probs=31.2
Q ss_pred cccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|..... .++.+.+... .... .-+.|+|.+|+|||++|+.+++.
T Consensus 7 ~~ig~~~~~---~~~~~~~~~~---~~~~-~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 7 NLLGEANSF---LEVLEQVSHL---APLD-KPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ---CCCHHH---HHHHHHHHHH---TTSC-SCEEEECCTTSCHHHHHHHHHHT
T ss_pred cceeCCHHH---HHHHHHHHHH---hCCC-CCEEEECCCCCcHHHHHHHHHHh
Confidence 578988888 7776555311 0112 34668999999999999999987
No 55
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.34 E-value=8.2e-05 Score=71.63 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=31.8
Q ss_pred cccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|.+..+.....|...+. ......+.|+|++|+||||||+.+++.
T Consensus 27 ~ivGq~~~~~~~~~L~~~i~------~~~~~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 27 QYIGQQHLLAAGKPLPRAIE------AGHLHSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp TCCSCHHHHSTTSHHHHHHH------HTCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HhCCcHHHHhchHHHHHHHH------cCCCcEEEEECCCCCcHHHHHHHHHHH
Confidence 67776655411123444444 223356789999999999999999987
No 56
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.32 E-value=0.00015 Score=75.43 Aligned_cols=44 Identities=23% Similarity=0.312 Sum_probs=36.3
Q ss_pred cccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++||+.++ +++.+.|. . ....-+.++|++|+|||++|+.+++.
T Consensus 171 ~viGr~~~i---~~l~~~l~----~--~~~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 171 PVIGRDEEI---RRVIQILL----R--RTKNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCSCHHHH---HHHHHHHH----C--SSCCCCEEEECTTSCHHHHHHHHHHH
T ss_pred ccCCcHHHH---HHHHHHHh----c--CCCCceEEEcCCCCCHHHHHHHHHHH
Confidence 589999999 99999887 2 22223578999999999999999876
No 57
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.31 E-value=8.8e-05 Score=67.37 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=35.7
Q ss_pred cccccccccccHHHHHhhcCCC---CCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPS---SGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~---~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|.+..+ +.+...+... -.........+.++|++|+|||++|+.+++.
T Consensus 18 ~i~G~~~~~---~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 18 RVVGQDEAI---RAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp TCCSCHHHH---HHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred hcCCHHHHH---HHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH
Confidence 578888887 7776666411 0011223457889999999999999999876
No 58
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.30 E-value=0.0002 Score=69.65 Aligned_cols=50 Identities=14% Similarity=0.234 Sum_probs=35.8
Q ss_pred cccccccccccHHHHHhhcCCCC-------CCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSS-------GLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~-------~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|.+..+ ++|.+++..+- ..+.....-+.|+|++|+|||++|+.+++.
T Consensus 205 ~i~G~~~~~---~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 205 DIGGCRKQL---AQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp GCCSCHHHH---HHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HcCCHHHHH---HHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 688999999 77777664100 000123345779999999999999999877
No 59
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.30 E-value=0.00039 Score=67.27 Aligned_cols=53 Identities=19% Similarity=0.259 Sum_probs=33.3
Q ss_pred cccccccccccHHHHHhhcCCCC---CCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSS---GLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
+++|.+..+..+.+++..+..+. .-+....+-+.|+|++|+|||+||+.+++.
T Consensus 17 di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 17 DVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp GCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 78898888722244444332110 001112233779999999999999999986
No 60
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.30 E-value=0.00093 Score=68.54 Aligned_cols=44 Identities=20% Similarity=0.229 Sum_probs=36.7
Q ss_pred cccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++||+.++ +++.+.|.. ....-+.|+|.+|+|||++|+.+++.
T Consensus 187 ~~iGr~~~i---~~l~~~l~~------~~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 187 PLIGREKEL---ERAIQVLCR------RRKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp CCCSCHHHH---HHHHHHHTS------SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CccCCHHHH---HHHHHHHhc------cCCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 689999999 999999882 23334678999999999999999875
No 61
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.27 E-value=0.0015 Score=60.13 Aligned_cols=40 Identities=8% Similarity=0.018 Sum_probs=27.3
Q ss_pred CCeEEEEEeCCCCh--hhHHHHHhhCCCCCCCcEEEEEeCCh
Q 040110 194 NKKYFTVLDDVWIE--KIWDDLREALPDNQIGSRALITVGPH 233 (348)
Q Consensus 194 ~kr~LlVLDdv~~~--~~~~~l~~~l~~~~~gskIlvTTR~~ 233 (348)
+++-++|+|+++.- ...+.+...+.....++.+|++|.+.
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 46788999999753 45666776665544567777777664
No 62
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.00081 Score=64.23 Aligned_cols=50 Identities=22% Similarity=0.302 Sum_probs=34.6
Q ss_pred cccccccccccHHHHHhhcCC----CC---CCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPP----SS---GLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~----~~---~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
++.|.+..+ ++|.+.+.- ++ ..+-..++=+.++|++|+|||+||+++++.
T Consensus 182 digGl~~~k---~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 182 GIGGLTEQI---RELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp GGCSCHHHH---HHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HhCChHHHH---HHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 567888888 666554420 00 012234556778999999999999999988
No 63
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.24 E-value=0.00034 Score=63.95 Aligned_cols=69 Identities=10% Similarity=0.090 Sum_probs=46.6
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEe--CCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHH
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRV--SNFYNFKRILDDIMKSLMPTSSWLKIMGKDYKSEKTILR 189 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 189 (348)
-+++.|+|++|+|||+||.+++.. .-..++|++. ....+ . ...+.+.....+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~-------------~-------~~~~le~~l~~i~ 177 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLS-------------G-------YNTDFNVFVDDIA 177 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSST-------------T-------CBCCHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhh-------------h-------hhcCHHHHHHHHH
Confidence 356789999999999999999865 1113456666 32211 1 0135566777777
Q ss_pred HHhcCCeEEEEEeCCCC
Q 040110 190 DYLTNKKYFTVLDDVWI 206 (348)
Q Consensus 190 ~~L~~kr~LlVLDdv~~ 206 (348)
+.+...+ +||+|++..
T Consensus 178 ~~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 178 RAMLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHHHCS-EEEEECCTT
T ss_pred HHHhhCC-EEEEecccc
Confidence 7776666 999999964
No 64
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.15 E-value=0.00043 Score=71.06 Aligned_cols=44 Identities=20% Similarity=0.328 Sum_probs=36.6
Q ss_pred cccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++||+.++ +++...|.. ....-+.++|++|+|||++|+.+++.
T Consensus 181 ~iiG~~~~i---~~l~~~l~~------~~~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 181 PVIGRSKEI---QRVIEVLSR------RTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp CCCCCHHHH---HHHHHHHHC------SSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CccCchHHH---HHHHHHHhC------CCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 689999999 999999872 22223678999999999999999876
No 65
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.13 E-value=7.5e-05 Score=66.45 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=33.3
Q ss_pred cccccccccccHHHHHhhcC---CCC---CCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLP---PSS---GLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~---~~~---~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|.+..+ +.+.+.+. .+. ..+....+-+.|+|++|+|||+||+.+++.
T Consensus 12 ~i~G~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 12 DMAGNEEAK---EEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp TSSSCTTTH---HHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HhCCcHHHH---HHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 799999988 66655442 000 000111223668999999999999999986
No 66
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.08 E-value=0.00027 Score=64.45 Aligned_cols=46 Identities=17% Similarity=0.288 Sum_probs=33.9
Q ss_pred cccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|+...+ .++.+.+... .....-+.|+|.+|+|||++|+.+++.
T Consensus 3 ~iig~s~~~---~~~~~~~~~~----a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 3 HMIGSSPAM---QHLLNEIAMV----APSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp CCCCCSHHH---HHHHHHHHHH----CSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CcEECCHHH---HHHHHHHHHH----hCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 578888888 7777766421 112234668999999999999999875
No 67
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.07 E-value=0.0015 Score=60.75 Aligned_cols=89 Identities=15% Similarity=0.074 Sum_probs=58.5
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc-ccCCCCHHHHHHHHH
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYNFKRILDDIMKSLMPTSSWL-KIMGKDYKSEKTILR 189 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~l~ 189 (348)
.-.++.|.|++|+||||||.+++... ...=..++|++....++.. .++.++...... -....+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~--~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA--QKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 34689999999999999999998762 2111246788777766654 556665542211 122345667777776
Q ss_pred HHhc-CCeEEEEEeCCCC
Q 040110 190 DYLT-NKKYFTVLDDVWI 206 (348)
Q Consensus 190 ~~L~-~kr~LlVLDdv~~ 206 (348)
..++ .+.-++|+|.+..
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 6654 4566899998753
No 68
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.06 E-value=0.0018 Score=55.64 Aligned_cols=116 Identities=13% Similarity=0.023 Sum_probs=61.4
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc------------------
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYNFKRILDDIMKSLMPTSSWL------------------ 174 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~------------------ 174 (348)
.+++|.|.+|+|||||++.++....... ..++|+... .....+...+. .++......
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~--~~v~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDG--DPCIYVTTE--ESRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHT--CCEEEEESS--SCHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCC--CeEEEEEcc--cCHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCce
Confidence 5889999999999999999885521111 235565543 24444444332 443321100
Q ss_pred -ccCCCCHHHHHHHHHHHhcC-C--eEEEEEeCCCC-----hhhHHHHHhhCCC--CCCCcEEEEEeCCh
Q 040110 175 -KIMGKDYKSEKTILRDYLTN-K--KYFTVLDDVWI-----EKIWDDLREALPD--NQIGSRALITVGPH 233 (348)
Q Consensus 175 -~~~~~~~~~~~~~l~~~L~~-k--r~LlVLDdv~~-----~~~~~~l~~~l~~--~~~gskIlvTTR~~ 233 (348)
.....+..++...+...+.. + ..+||||.... ......+...+.. ...|..||++|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 00112556666666655532 3 34999999862 2222333222211 12467788888765
No 69
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.02 E-value=0.017 Score=55.07 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=28.7
Q ss_pred HHHHhhcCCCCC---CCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 95 RNLHQRLPPSSG---LGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 95 ~~l~~~L~~~~~---~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
+++.++|.+... ......++|.++|.+|+||||++..++..
T Consensus 80 ~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 80 NELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp HHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 555666653211 12245789999999999999999888755
No 70
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.00068 Score=63.93 Aligned_cols=50 Identities=20% Similarity=0.311 Sum_probs=34.6
Q ss_pred cccccccccccHHHHHhhcCC----CC---CCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPP----SS---GLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~----~~---~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
++.|.+..+ ++|.+.+.- ++ .-+-..++=+.++|++|+|||.||+++++.
T Consensus 149 dIgGl~~~k---~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 149 MVGGLTKQI---KEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp GSCSCHHHH---HHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred HhCCHHHHH---HHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 567888888 666655421 00 012233445778999999999999999987
No 71
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.92 E-value=0.004 Score=57.10 Aligned_cols=95 Identities=15% Similarity=0.142 Sum_probs=58.8
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcCccccCC----cceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc----c-ccCCCCH
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNNNFVKFY----FDCHAWVRVSNFYNFKRILDDIMKSLMPTSSW----L-KIMGKDY 181 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~-~~~~~~~ 181 (348)
.-.++.|+|.+|+||||||.+++........ -..++|++....++...+. +++..++..... . -....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCH
Confidence 3458889999999999999998865212211 1367899888877776655 345566543210 0 0112233
Q ss_pred H---HHHHHHHHHhc--CCeEEEEEeCCCC
Q 040110 182 K---SEKTILRDYLT--NKKYFTVLDDVWI 206 (348)
Q Consensus 182 ~---~~~~~l~~~L~--~kr~LlVLDdv~~ 206 (348)
+ ++...+...++ .+.-+||+|.+..
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 3 34455565664 4678999999853
No 72
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.92 E-value=0.0076 Score=55.70 Aligned_cols=96 Identities=7% Similarity=0.020 Sum_probs=58.5
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhcCccccC----CcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc----c----ccC
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYNNNFVKF----YFDCHAWVRVSNFYNFKRILDDIMKSLMPTSSW----L----KIM 177 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~----~~~ 177 (348)
+.-.++.|+|.+|+||||||.+++....... .-..++|++....++...+. .++..++..... . ...
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCC
Confidence 3456889999999999999999886522211 12367899888877776654 344555543110 0 011
Q ss_pred CCCHHHHHHHHHHHhc---CCeEEEEEeCCCC
Q 040110 178 GKDYKSEKTILRDYLT---NKKYFTVLDDVWI 206 (348)
Q Consensus 178 ~~~~~~~~~~l~~~L~---~kr~LlVLDdv~~ 206 (348)
.....++...+...++ .+.-+||+|.+..
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 1222244444555553 5677999999853
No 73
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.89 E-value=0.00078 Score=64.93 Aligned_cols=50 Identities=18% Similarity=0.162 Sum_probs=34.8
Q ss_pred CcccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 82 DALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 82 ~~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
+.++|.+..+..+..+++.+. .+....+-+.++|++|+|||+||+.+++.
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~----~~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIK----SKKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHH----TTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHH----hCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 379999998822223444443 22223345778999999999999999987
No 74
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.88 E-value=0.0033 Score=54.44 Aligned_cols=94 Identities=6% Similarity=-0.019 Sum_probs=55.0
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcCccccC----CcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc----c-ccCCCCHH
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNNNFVKF----YFDCHAWVRVSNFYNFKRILDDIMKSLMPTSSW----L-KIMGKDYK 182 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~-~~~~~~~~ 182 (348)
-.++.|+|++|+|||||+..+........ .-..++|+.....++...+ ..++..++..... . -....+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 35899999999999999999887421211 1246788877665555444 3344555443100 0 01122333
Q ss_pred H---HHHHHHHHhc-CCeEEEEEeCCCC
Q 040110 183 S---EKTILRDYLT-NKKYFTVLDDVWI 206 (348)
Q Consensus 183 ~---~~~~l~~~L~-~kr~LlVLDdv~~ 206 (348)
+ ....+.+.+. .+.-+||||.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 3 2333555553 4678999999864
No 75
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.85 E-value=0.004 Score=56.37 Aligned_cols=86 Identities=10% Similarity=0.019 Sum_probs=46.8
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeC-CCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHH
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVS-NFYNFKRILDDIMKSLMPTSSWLKIMGKDYKSEKTILR 189 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 189 (348)
...+++++|.+|+||||++..++......... .+..+... ......+.+.......+.+.. ...+...+...+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~----~~~~~~~l~~al~ 178 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-KIAFITTDTYRIAAVEQLKTYAELLQAPLE----VCYTKEEFQQAKE 178 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-CEEEEECCCSSTTHHHHHHHHHTTTTCCCC----BCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-EEEEEecCcccchHHHHHHHHHHhcCCCeE----ecCCHHHHHHHHH
Confidence 45699999999999999999988663221222 23344332 223344444444444444321 1223444444444
Q ss_pred HHhcCCeEEEEEeC
Q 040110 190 DYLTNKKYFTVLDD 203 (348)
Q Consensus 190 ~~L~~kr~LlVLDd 203 (348)
. + .+.=++|+|-
T Consensus 179 ~-~-~~~dlvIiDT 190 (296)
T 2px0_A 179 L-F-SEYDHVFVDT 190 (296)
T ss_dssp H-G-GGSSEEEEEC
T ss_pred H-h-cCCCEEEEeC
Confidence 3 3 3445777884
No 76
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.83 E-value=0.0032 Score=58.77 Aligned_cols=87 Identities=14% Similarity=0.055 Sum_probs=56.8
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc-ccCCCCHHHHHHHHHH
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYNFKRILDDIMKSLMPTSSWL-KIMGKDYKSEKTILRD 190 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~l~~ 190 (348)
-.++.|.|.+|+||||||.++.... ...=..++|++....++.. ++..++.+.... -....+.+++...+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 3478889999999999999987662 2111368899888777654 245555432110 1122456777777766
Q ss_pred HhcC-CeEEEEEeCCC
Q 040110 191 YLTN-KKYFTVLDDVW 205 (348)
Q Consensus 191 ~L~~-kr~LlVLDdv~ 205 (348)
..+. .--+||+|.+.
T Consensus 147 l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHTTTCCSEEEEECTT
T ss_pred HHhcCCCCEEEEeChH
Confidence 6654 45689999975
No 77
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.0011 Score=63.12 Aligned_cols=50 Identities=16% Similarity=0.245 Sum_probs=35.1
Q ss_pred cccccccccccHHHHHhhcCC----C---CCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPP----S---SGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~----~---~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
++.|.+..+ ++|.+.+.- + ..-+-..++=+.++|++|+|||+||+++++.
T Consensus 173 digGl~~~k---~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 173 DVGGLDMQK---QEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp GSCSCHHHH---HHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred HhccHHHHH---HHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 567888888 777665521 0 0012234555779999999999999999987
No 78
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.77 E-value=0.0014 Score=67.23 Aligned_cols=97 Identities=13% Similarity=0.215 Sum_probs=56.9
Q ss_pred cccccccccccHHHHHhhc----CCC---CCCCCCCcEEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCC
Q 040110 83 ALLGLQSKIINLRNLHQRL----PPS---SGLGQPTHSVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYN 155 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L----~~~---~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~ 155 (348)
++.|.+..+ ++|.+.+ ..+ ..-+-..++-|.++|++|+|||+||+++++. ...+| +.++.+
T Consensus 205 dIgGl~~~~---~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~---- 272 (806)
T 3cf2_A 205 DIGGCRKQL---AQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP---- 272 (806)
T ss_dssp GCCSCCTTH---HHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHH----
T ss_pred hhcCHHHHH---HHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhH----
Confidence 577889888 6665543 211 1122344566789999999999999999988 43332 333221
Q ss_pred HHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 040110 156 FKRILDDIMKSLMPTSSWLKIMGKDYKSEKTILRDYLTNKKYFTVLDDVWI 206 (348)
Q Consensus 156 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~ 206 (348)
+ +. +.. .......+...+.......+.+|+||+++.
T Consensus 273 --~----l~---sk~------~gese~~lr~lF~~A~~~~PsIIfIDEiDa 308 (806)
T 3cf2_A 273 --E----IM---SKL------AGESESNLRKAFEEAEKNAPAIIFIDELDA 308 (806)
T ss_dssp --H----HH---SSC------TTHHHHHHHHHHHHHTTSCSEEEEEESGGG
T ss_pred --H----hh---ccc------chHHHHHHHHHHHHHHHcCCeEEEEehhcc
Confidence 1 11 110 111223333334444456789999999863
No 79
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.77 E-value=0.00083 Score=69.37 Aligned_cols=50 Identities=14% Similarity=0.242 Sum_probs=36.3
Q ss_pred cccccccccccHHHHHhhcCC----C---CCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPP----S---SGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~----~---~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|.+..+ +.|.+++.. + ..-.-.....+.|+|++|+||||||+.+++.
T Consensus 205 di~G~~~~~---~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 205 DVGGCRKQL---AQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp GCCSCSGGG---GHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred HhCChHHHH---HHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 689999999 777666531 0 0011233446889999999999999999887
No 80
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.0013 Score=62.98 Aligned_cols=50 Identities=20% Similarity=0.265 Sum_probs=35.1
Q ss_pred cccccccccccHHHHHhhcC----CCC---CCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLP----PSS---GLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~----~~~---~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
++.|.+..+ ++|.+.+. .++ .-+-..++=|.++|++|+|||+||+++++.
T Consensus 210 DIgGl~~~k---~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 210 DVGGCKDQI---EKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp SCTTCHHHH---HHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred HhccHHHHH---HHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 567888888 77766542 000 012234556779999999999999999987
No 81
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.75 E-value=0.0062 Score=55.63 Aligned_cols=94 Identities=12% Similarity=0.039 Sum_probs=58.4
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcCccccC---------Cc-----ceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc---
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNNNFVKF---------YF-----DCHAWVRVSNFYNFKRILDDIMKSLMPTSSW--- 173 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~---------~F-----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--- 173 (348)
.-.++.|.|.+|+|||+||.+++....... .. ..++|++....++...+.. ++..++.+...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 456889999999999999999876421111 11 3678898888877776654 45556543210
Q ss_pred -c-ccCCCCHH---HHHHHHHHHhcC--CeEEEEEeCCC
Q 040110 174 -L-KIMGKDYK---SEKTILRDYLTN--KKYFTVLDDVW 205 (348)
Q Consensus 174 -~-~~~~~~~~---~~~~~l~~~L~~--kr~LlVLDdv~ 205 (348)
. -....+.+ ++...+...++. +.-+||+|.+.
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 0 01112333 344556666643 56799999985
No 82
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.75 E-value=0.0037 Score=57.98 Aligned_cols=89 Identities=16% Similarity=0.057 Sum_probs=56.6
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc-ccCCCCHHHHHHHHH
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYNFKRILDDIMKSLMPTSSWL-KIMGKDYKSEKTILR 189 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~l~ 189 (348)
.-.++.|.|.+|+||||||.++.... ...=..++|++....++.. .++.++...... -....+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~--~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANA--QAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 34588999999999999999987652 2111357888887776653 345555432210 112235666666666
Q ss_pred HHhcC-CeEEEEEeCCCC
Q 040110 190 DYLTN-KKYFTVLDDVWI 206 (348)
Q Consensus 190 ~~L~~-kr~LlVLDdv~~ 206 (348)
...+. +.-+||+|.+..
T Consensus 133 ~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHTTTCCSEEEEECGGG
T ss_pred HHHhcCCCCEEEEcChHh
Confidence 55543 567999999853
No 83
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.68 E-value=0.002 Score=66.14 Aligned_cols=50 Identities=12% Similarity=0.175 Sum_probs=35.6
Q ss_pred cccccccccccHHHHHhhcCCC---CCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPS---SGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~---~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|.+..+ +.+...+... ..........+.++|++|+|||++|+.+++.
T Consensus 492 ~viGq~~a~---~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 492 RVIGQDEAV---VAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp TSCSCHHHH---HHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH
T ss_pred cCcChHHHH---HHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 578888877 7766666411 0111233446889999999999999999877
No 84
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.66 E-value=0.0075 Score=58.61 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=34.2
Q ss_pred cccccccccccHHHHHhhcCCCC---CCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSS---GLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
+++|.+..+..++++...+..+. .-+-.-.+=+.|+|++|+||||||+.+++.
T Consensus 32 dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 32 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp SSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 78998888733344444443110 001111223789999999999999999987
No 85
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.65 E-value=0.00079 Score=58.46 Aligned_cols=114 Identities=11% Similarity=-0.068 Sum_probs=62.5
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHH
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYNFKRILDDIMKSLMPTSSWLKIMGKDYKSEKTILRD 190 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 190 (348)
.-.++.|+|..|+||||++..+.++...+ ... ++.+..... .. ....++..++.... ........++...+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~-g~k-Vli~~~~~d--~r-~~~~i~srlG~~~~--~~~~~~~~~i~~~i~~ 83 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYA-DVK-YLVFKPKID--TR-SIRNIQSRTGTSLP--SVEVESAPEILNYIMS 83 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHT-TCC-EEEEEECCC--GG-GCSSCCCCCCCSSC--CEEESSTHHHHHHHHS
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhc-CCE-EEEEEeccC--ch-HHHHHHHhcCCCcc--ccccCCHHHHHHHHHH
Confidence 34688899999999999998887763222 122 333322221 11 11234444544322 1112334556666666
Q ss_pred HhcCCe-EEEEEeCCCCh--hhHHHHHhhCCCCCCCcEEEEEeCChh
Q 040110 191 YLTNKK-YFTVLDDVWIE--KIWDDLREALPDNQIGSRALITVGPHN 234 (348)
Q Consensus 191 ~L~~kr-~LlVLDdv~~~--~~~~~l~~~l~~~~~gskIlvTTR~~~ 234 (348)
.+.+.+ -+||+|.+... ++.+.+.. +.+ .|-.||+|-+..+
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDKN 127 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSBC
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEecccc
Confidence 555444 49999998642 34444432 222 2678999988433
No 86
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.65 E-value=0.0018 Score=55.18 Aligned_cols=37 Identities=24% Similarity=0.435 Sum_probs=28.6
Q ss_pred HHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 95 RNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 95 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
++|.+.+.. ......+++|+|+.|+|||||++.+...
T Consensus 9 ~~~~~~~~~----~~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 9 QGVLERLDP----RQPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHSCT----TCCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHh----cCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 566666651 1345579999999999999999998766
No 87
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.63 E-value=0.0052 Score=55.97 Aligned_cols=86 Identities=6% Similarity=0.029 Sum_probs=56.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCccccCCc--ceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc-ccCCCCHHHH-HHHHH
Q 040110 114 VVAILDSRGFDKTAFAAEIYNNNFVKFYF--DCHAWVRVSNFYNFKRILDDIMKSLMPTSSWL-KIMGKDYKSE-KTILR 189 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~-~~~l~ 189 (348)
++-|.|++|+|||||+.++... ....+ ..++|++....++.. .+++++.+.... -....+.++. ...+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 6889999999999999988766 22221 357899888777753 367777653321 1123355555 44333
Q ss_pred HH--h-cCCeEEEEEeCCCC
Q 040110 190 DY--L-TNKKYFTVLDDVWI 206 (348)
Q Consensus 190 ~~--L-~~kr~LlVLDdv~~ 206 (348)
.. + +.+.-|+|+|.+..
T Consensus 103 ~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTT
T ss_pred HHHHhhccCceEEEEecccc
Confidence 32 3 34688999999864
No 88
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.0015 Score=62.29 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=35.9
Q ss_pred cccccccccccHHHHHhhcC----CCC---CCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLP----PSS---GLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~----~~~---~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
++.|.+..+ ++|.+.+. .++ ..+-..++=+.++|++|+|||.||+++++.
T Consensus 182 digGl~~~k---~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 182 DVGGLDKQI---EELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp GSCSCHHHH---HHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred hcCcHHHHH---HHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 677888888 77776542 110 012234556778999999999999999987
No 89
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.57 E-value=0.033 Score=50.29 Aligned_cols=90 Identities=13% Similarity=-0.026 Sum_probs=45.8
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCC-CCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHH
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNF-YNFKRILDDIMKSLMPTSSWLKIMGKDYKSEKTILRD 190 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 190 (348)
..+++++|.+|+||||++..++....... ..+.++..... ......+.......+.+... .....+..++.....+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g--~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~-~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKG--FKVGLVGADVYRPAALEQLQQLGQQIGVPVYG-EPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTT--CCEEEEECCCSSSHHHHHHHHHHHHHTCCEEC-CTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEecCCCCHHHHHHHHHHhccCCeEEEe-cCCCCCHHHHHHHHHH
Confidence 67899999999999999998876632111 12344443221 22223334444444443111 1112344444433344
Q ss_pred Hhc-CCeEEEEEeCC
Q 040110 191 YLT-NKKYFTVLDDV 204 (348)
Q Consensus 191 ~L~-~kr~LlVLDdv 204 (348)
.++ ..-=++|+|-.
T Consensus 175 ~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 443 33236666754
No 90
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.56 E-value=0.032 Score=53.10 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=22.1
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...++.++|.+|+||||++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999888755
No 91
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.55 E-value=0.006 Score=56.72 Aligned_cols=88 Identities=13% Similarity=0.020 Sum_probs=54.8
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc-ccCCCCHHHHHHHHH
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYNFKRILDDIMKSLMPTSSWL-KIMGKDYKSEKTILR 189 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~l~ 189 (348)
.-.++.|.|.+|+||||||.+++... ...=..++|++....++.. .+..++...... -....+.+++...+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~--~~~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 34588899999999999999988662 2111257889887777643 245555432110 111234555655555
Q ss_pred HHhc-CCeEEEEEeCCC
Q 040110 190 DYLT-NKKYFTVLDDVW 205 (348)
Q Consensus 190 ~~L~-~kr~LlVLDdv~ 205 (348)
...+ .+--+||+|.+.
T Consensus 135 ~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHTCCSEEEEECGG
T ss_pred HHHhccCCCEEEEcCHH
Confidence 4443 455689999974
No 92
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.45 E-value=0.0012 Score=60.23 Aligned_cols=24 Identities=13% Similarity=0.212 Sum_probs=21.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...+.|+|++|+|||+||..+++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346779999999999999999986
No 93
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.41 E-value=0.0048 Score=55.15 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 040110 115 VAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 115 i~I~G~gGvGKTtLA~~v~~~ 135 (348)
+.++|++|+||||||+.++..
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 889999999999999999986
No 94
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.39 E-value=0.04 Score=50.51 Aligned_cols=26 Identities=23% Similarity=0.187 Sum_probs=22.9
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
....+++|+|+.|+||||++..++..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999998765
No 95
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.38 E-value=0.013 Score=55.92 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=22.1
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+.+|.++|.+|+||||++..++..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4789999999999999999888754
No 96
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.37 E-value=0.011 Score=53.26 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=20.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|.|.+|+|||||++.++..
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 47899999999999999998876
No 97
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.35 E-value=0.0025 Score=66.25 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=34.6
Q ss_pred cccccccccccHHHHHhhcCCCC---CCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSS---GLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|.+..+ +.+...+.... .........+.|+|++|+|||++|+.+++.
T Consensus 559 ~viG~~~a~---~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 559 RVVGQDEAI---RAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp HSCSCHHHH---HHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred ccCCcHHHH---HHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 468888877 66666553110 011223457889999999999999999876
No 98
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.34 E-value=0.0018 Score=53.39 Aligned_cols=23 Identities=4% Similarity=0.067 Sum_probs=21.0
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+|.|.|++|+||||+|+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47889999999999999999876
No 99
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.33 E-value=0.0019 Score=52.81 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=20.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+|.|.|++|+||||+|+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999866
No 100
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.33 E-value=0.06 Score=47.67 Aligned_cols=23 Identities=30% Similarity=0.289 Sum_probs=20.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||.+.++.-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999765
No 101
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.33 E-value=0.0018 Score=54.92 Aligned_cols=38 Identities=16% Similarity=0.132 Sum_probs=28.2
Q ss_pred HHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 95 RNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 95 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
+.|.+.+.. .......+++|.|..|+||||+++.+...
T Consensus 8 ~~l~~~~~~---~~~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 8 DFLCKTILA---IKTAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp HHHHHHHHT---SCCSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHH---hccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 556665551 11345579999999999999999998764
No 102
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.30 E-value=0.011 Score=53.75 Aligned_cols=107 Identities=11% Similarity=0.013 Sum_probs=56.2
Q ss_pred HHHHhhcCCCCC--CCCCCcEEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCCH--HHHHHHHHHHhCCC
Q 040110 95 RNLHQRLPPSSG--LGQPTHSVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYNF--KRILDDIMKSLMPT 170 (348)
Q Consensus 95 ~~l~~~L~~~~~--~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~--~~~~~~i~~~l~~~ 170 (348)
+.|.+.|.+... .......+++|+|++|+||||++..++....... ..+..+.. ..+.. .+-+...++.++.+
T Consensus 85 ~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g--~kV~lv~~-D~~r~~a~eqL~~~~~~~gl~ 161 (306)
T 1vma_A 85 EIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEG--KSVVLAAA-DTFRAAAIEQLKIWGERVGAT 161 (306)
T ss_dssp HHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEE-CTTCHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcC--CEEEEEcc-ccccHHHHHHHHHHHHHcCCc
Confidence 556666653210 1124567999999999999999999887632211 12334433 22322 22234455555543
Q ss_pred CCccccCCCCHHHH-HHHHHHHhcCCeEEEEEeCCC
Q 040110 171 SSWLKIMGKDYKSE-KTILRDYLTNKKYFTVLDDVW 205 (348)
Q Consensus 171 ~~~~~~~~~~~~~~-~~~l~~~L~~kr~LlVLDdv~ 205 (348)
... .....+...+ ...+...+..+.-++|+|-.-
T Consensus 162 ~~~-~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 162 VIS-HSEGADPAAVAFDAVAHALARNKDVVIIDTAG 196 (306)
T ss_dssp EEC-CSTTCCHHHHHHHHHHHHHHTTCSEEEEEECC
T ss_pred EEe-cCCccCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 111 1112233332 334555555555578888653
No 103
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.29 E-value=0.0022 Score=52.34 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=18.6
Q ss_pred EEEEEECCCCCcHHHHHHHH
Q 040110 113 SVVAILDSRGFDKTAFAAEI 132 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v 132 (348)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37889999999999999999
No 104
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.22 E-value=0.0028 Score=52.16 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=20.4
Q ss_pred EEEEEECCCCCcHHHHHHHHhc
Q 040110 113 SVVAILDSRGFDKTAFAAEIYN 134 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~ 134 (348)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4788999999999999999987
No 105
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.20 E-value=0.0044 Score=55.96 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=23.5
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 109 QPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 109 ~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.....+|+|.|..|+||||||+.+...
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 346779999999999999999988765
No 106
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.16 E-value=0.0032 Score=52.50 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=21.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
-.+++|+|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 458999999999999999999876
No 107
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.15 E-value=0.0029 Score=53.47 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=21.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..+|.|+|++|+||||+++.+...
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 458899999999999999999876
No 108
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.0065 Score=57.61 Aligned_cols=50 Identities=22% Similarity=0.349 Sum_probs=34.3
Q ss_pred cccccccccccHHHHHhhcC----CCC---CCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLP----PSS---GLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~----~~~---~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
++.|.+..+ ++|.+.+. .++ ..+-..++=+.++|++|+|||.||+++++.
T Consensus 183 DIgGld~~k---~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 183 DIGGLESQI---QEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp GTCSCHHHH---HHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred ecCcHHHHH---HHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH
Confidence 566788888 66655442 110 012234456779999999999999999988
No 109
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.10 E-value=0.021 Score=51.95 Aligned_cols=49 Identities=20% Similarity=0.131 Sum_probs=33.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCCHHHHHHHHHH
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYNFKRILDDIMK 165 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 165 (348)
.++.|.|.+|+||||||..++.+..... ..++|++.. -+..++...++.
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~ 117 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIV 117 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHH
Confidence 4788899999999999999876532222 467777654 445555555544
No 110
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.10 E-value=0.003 Score=52.55 Aligned_cols=23 Identities=9% Similarity=0.330 Sum_probs=20.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|++|+|||||++.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 48999999999999999999865
No 111
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.06 E-value=0.021 Score=54.26 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=22.1
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...+++++|.+|+||||++..++..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999988765
No 112
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.04 E-value=0.0041 Score=52.58 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=22.5
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...+++|+|++|+|||||++.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999877
No 113
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.03 E-value=0.0029 Score=51.92 Aligned_cols=23 Identities=9% Similarity=0.235 Sum_probs=20.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+|+|+|+.|+|||||++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999876
No 114
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.03 E-value=0.034 Score=52.46 Aligned_cols=95 Identities=8% Similarity=0.019 Sum_probs=53.6
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcCccccC----CcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc-----cccCCCCH
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNNNFVKF----YFDCHAWVRVSNFYNFKRILDDIMKSLMPTSSW-----LKIMGKDY 181 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~ 181 (348)
.-.++.|+|.+|+|||||+..++-...... .-..++|++....++...+ ..+++.++..... .-....+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCCh
Confidence 345899999999999999997653211111 1235788877666665544 3366666543110 00111222
Q ss_pred H---HHHHHHHHHh-cCCeEEEEEeCCCC
Q 040110 182 K---SEKTILRDYL-TNKKYFTVLDDVWI 206 (348)
Q Consensus 182 ~---~~~~~l~~~L-~~kr~LlVLDdv~~ 206 (348)
. +....+...+ ..+.-+||+|.+..
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 2 2333333333 24678999999753
No 115
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.03 E-value=0.0051 Score=50.57 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=22.0
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...+++|+|+.|+||||+++.+...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3468999999999999999998765
No 116
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.02 E-value=0.018 Score=53.24 Aligned_cols=97 Identities=12% Similarity=0.115 Sum_probs=55.5
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhcCccccCCc---c-eeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc-------c-cC
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYNNNFVKFYF---D-CHAWVRVSNFYNFKRILDDIMKSLMPTSSWL-------K-IM 177 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F---~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-------~-~~ 177 (348)
+.-.++.|+|+.|+|||||+..++......... . .++|++....+....+ ..++..++...... . ..
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCC
Confidence 345689999999999999999988662111111 2 3478876655543333 33455444321100 0 00
Q ss_pred CCCHHHHHHHHHHHhc------CCeEEEEEeCCCCh
Q 040110 178 GKDYKSEKTILRDYLT------NKKYFTVLDDVWIE 207 (348)
Q Consensus 178 ~~~~~~~~~~l~~~L~------~kr~LlVLDdv~~~ 207 (348)
.....++...+...+. .+.-+||+|.+-..
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 1112334455555554 46889999998654
No 117
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.00 E-value=0.0017 Score=59.84 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=34.1
Q ss_pred cccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|.+..+ +.+...+.... ........+.++|++|+||||||+.+++.
T Consensus 26 ~~~g~~~~~---~~l~~~i~~~~-~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 26 EFIGQENVK---KKLSLALEAAK-MRGEVLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp GCCSCHHHH---HHHHHHHHHHH-HHTCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred HccCcHHHH---HHHHHHHHHHH-hcCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 678887777 66655553100 00123356889999999999999999987
No 118
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.99 E-value=0.011 Score=58.22 Aligned_cols=50 Identities=16% Similarity=0.183 Sum_probs=33.0
Q ss_pred cccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|.+... +.+.+.+.-..-........+.++|++|+||||||+.++..
T Consensus 82 di~G~~~vk---~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 82 EHHGLEKVK---ERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HCSSCHHHH---HHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HhccHHHHH---HHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 578877776 65544331000001113457899999999999999999877
No 119
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.99 E-value=0.0024 Score=59.47 Aligned_cols=112 Identities=12% Similarity=0.073 Sum_probs=65.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc--cccCCCCHHHHHHHHH
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYNFKRILDDIMKSLMPTSSW--LKIMGKDYKSEKTILR 189 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~l~ 189 (348)
-.+++|+|+.|+|||||.+.+... +.......+ +++..+.... +...... ......+.......+.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i-~t~ed~~e~~---------~~~~~~~v~q~~~~~~~~~~~~~La 190 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHI-LTIEDPIEFV---------HESKKCLVNQREVHRDTLGFSEALR 190 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEE-EEEESSCCSC---------CCCSSSEEEEEEBTTTBSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEE-EEccCcHHhh---------hhccccceeeeeeccccCCHHHHHH
Confidence 448999999999999999998765 221111222 2222221100 0000000 0000111123445788
Q ss_pred HHhcCCeEEEEEeCCCChhhHHHHHhhCCCCCCCcEEEEEeCChhhhhh
Q 040110 190 DYLTNKKYFTVLDDVWIEKIWDDLREALPDNQIGSRALITVGPHNILTS 238 (348)
Q Consensus 190 ~~L~~kr~LlVLDdv~~~~~~~~l~~~l~~~~~gskIlvTTR~~~v~~~ 238 (348)
..|...+=+|++|.+.+.+.++.+.... ..|.-|++||-..+.+..
T Consensus 191 ~aL~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~~ 236 (356)
T 3jvv_A 191 SALREDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAAKT 236 (356)
T ss_dssp HHTTSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHHHH
T ss_pred HHhhhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHHHH
Confidence 8899999999999998776666554442 235568999988777644
No 120
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.97 E-value=0.0038 Score=51.86 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=21.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+.|.|+|++|+||||+|+.+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 347889999999999999999876
No 121
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.97 E-value=0.017 Score=55.60 Aligned_cols=90 Identities=12% Similarity=0.179 Sum_probs=56.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcccc-CCcceeEEEEeCCCC-CHHHHHHHHHHHhCCC-------CCc--cccCCCC--
Q 040110 114 VVAILDSRGFDKTAFAAEIYNNNFVK-FYFDCHAWVRVSNFY-NFKRILDDIMKSLMPT-------SSW--LKIMGKD-- 180 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~~~~~-~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~--~~~~~~~-- 180 (348)
.++|.|.+|+|||+|+..+.++ +. .+-+.++++-++... .+.+++.++...=... ... ....+..
T Consensus 167 r~gIfgg~GvGKT~L~~~l~~~--~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~~ 244 (498)
T 1fx0_B 167 KIGLFGGAGVGKTVLIMELINN--IAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPG 244 (498)
T ss_dssp CEEEEECSSSSHHHHHHHHHHH--TTTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHH
T ss_pred eEEeecCCCCCchHHHHHHHHH--HHhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCHH
Confidence 4789999999999999998876 32 234677888887765 4567777776542221 111 0111111
Q ss_pred ----HHHHHHHHHHHhc---CCeEEEEEeCCC
Q 040110 181 ----YKSEKTILRDYLT---NKKYFTVLDDVW 205 (348)
Q Consensus 181 ----~~~~~~~l~~~L~---~kr~LlVLDdv~ 205 (348)
.....-.+.++++ ++.+||++||+-
T Consensus 245 ~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 245 ARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp HHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 1122233455554 479999999984
No 122
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.95 E-value=0.0034 Score=58.34 Aligned_cols=50 Identities=16% Similarity=0.130 Sum_probs=34.0
Q ss_pred cccccccccccHHHHHhhcC--------C-CCCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLP--------P-SSGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~--------~-~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|.+..+ +.+...+. . ...........+.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~---~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAK---KVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHH---HHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHH---HHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 467888877 77766661 0 00011123345778999999999999999987
No 123
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.95 E-value=0.0047 Score=51.95 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=23.2
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
....+|+|.|+.|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999999875
No 124
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.94 E-value=0.0041 Score=51.70 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=21.0
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+|.|.|++|+||||+|+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999999876
No 125
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.93 E-value=0.0023 Score=57.69 Aligned_cols=50 Identities=18% Similarity=0.225 Sum_probs=34.9
Q ss_pred cccccccccccHHHHHhhcCCC---CCC-----CCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPS---SGL-----GQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~---~~~-----~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|.+..+ +.+...+... ... ......-+.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~---~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 16 HIIGQADAK---RAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TCCSCHHHH---HHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hcCChHHHH---HHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 588999888 8777766410 000 0112335678999999999999999876
No 126
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.90 E-value=0.0053 Score=51.17 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=22.0
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...+|.|.|++|+||||+|+.+...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468899999999999999999875
No 127
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.88 E-value=0.0033 Score=53.13 Aligned_cols=24 Identities=13% Similarity=0.266 Sum_probs=21.6
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..+|.|.|+.|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999876
No 128
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.88 E-value=0.005 Score=54.17 Aligned_cols=27 Identities=11% Similarity=0.107 Sum_probs=22.6
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 109 QPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 109 ~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.....+|+|.|+.|+||||+|+.+...
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999999875
No 129
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.86 E-value=0.0046 Score=52.14 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 48999999999999999999865
No 130
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.85 E-value=0.0049 Score=52.11 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=22.0
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...+++|+|+.|+|||||++.+...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3458999999999999999999876
No 131
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.83 E-value=0.0063 Score=51.32 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=23.4
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 109 QPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 109 ~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.....+|+|.|+.|+||||+|+.+.+.
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999999865
No 132
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.83 E-value=0.005 Score=52.33 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=22.1
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...+++|+|+.|+|||||++.+...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999998775
No 133
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.82 E-value=0.0056 Score=52.19 Aligned_cols=24 Identities=8% Similarity=0.317 Sum_probs=21.8
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..+++|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 458999999999999999999877
No 134
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.81 E-value=0.023 Score=52.30 Aligned_cols=89 Identities=11% Similarity=0.017 Sum_probs=53.0
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCC---------C-----------
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYNFKRILDDIMKSLMPTS---------S----------- 172 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------~----------- 172 (348)
.++.|.|.+|+||||||..++.+..... ..++|++. .-+..++...++.....-. +
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~g--~~Vl~fSl--Ems~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a~ 122 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALNDD--RGVAVFSL--EMSAEQLALRALSDLTSINMHDLESGRLDDDQWENLAKCF 122 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTT--CEEEEEES--SSCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEeC--CCCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 4788899999999999999887632211 24566654 3445555555543321100 0
Q ss_pred ------c---cccCCCCHHHHHHHHHHHhcC--CeEEEEEeCCC
Q 040110 173 ------W---LKIMGKDYKSEKTILRDYLTN--KKYFTVLDDVW 205 (348)
Q Consensus 173 ------~---~~~~~~~~~~~~~~l~~~L~~--kr~LlVLDdv~ 205 (348)
. ...+..++.++...+++..+. +.-++|+|.+.
T Consensus 123 ~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLq 166 (338)
T 4a1f_A 123 DHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQ 166 (338)
T ss_dssp HHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEE
T ss_pred HHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechH
Confidence 0 022334667777777665533 46788888764
No 135
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.78 E-value=0.0053 Score=51.01 Aligned_cols=23 Identities=22% Similarity=0.253 Sum_probs=20.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+|.|.|++|+||||+++.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999875
No 136
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.76 E-value=0.006 Score=50.77 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=21.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..+|.|.|++|+||||+|+.+...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999998765
No 137
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.74 E-value=0.0056 Score=50.46 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=19.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHh
Q 040110 112 HSVVAILDSRGFDKTAFAAEIY 133 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~ 133 (348)
-.+++|+|+.|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4589999999999999999754
No 138
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.74 E-value=0.049 Score=52.24 Aligned_cols=65 Identities=17% Similarity=0.218 Sum_probs=43.0
Q ss_pred HHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCC-CHHHHHHHHHHH
Q 040110 96 NLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFY-NFKRILDDIMKS 166 (348)
Q Consensus 96 ~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~ 166 (348)
+.++.|.+- ..+ ..++|.|.+|+|||+|+..+.++.. +.+-+.++++-++... .+.++++++...
T Consensus 142 r~ID~l~pi----gkG-Qr~~Ifgg~G~GKT~L~~~i~~~~~-~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPY----AKG-GKIGLFGGAGVGKTVLIMELINNVA-KAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCE----ETT-CEEEEEECTTSSHHHHHHHHHHHTT-TTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEeccccc----ccC-CeeeeecCCCCChHHHHHHHHHhhH-hhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 556666521 112 2578999999999999999987621 2233566777777664 456777777654
No 139
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.73 E-value=0.0063 Score=51.58 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=22.8
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
....+++|+|++|+||||+|+.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999999876
No 140
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.73 E-value=0.006 Score=51.43 Aligned_cols=23 Identities=13% Similarity=0.365 Sum_probs=21.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+||||+++.+...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999999876
No 141
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.73 E-value=0.0062 Score=55.63 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=21.7
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
++.+||+|.|-|||||||.+..+.--
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~a 71 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAA 71 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHH
Confidence 46789999999999999988776544
No 142
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.72 E-value=0.0056 Score=50.01 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=21.4
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999876
No 143
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.71 E-value=0.0061 Score=53.76 Aligned_cols=23 Identities=22% Similarity=0.144 Sum_probs=20.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++.|.|+.|+||||||+.++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999999875
No 144
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.71 E-value=0.0056 Score=52.54 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=20.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+|+|+|+.|+||||+++.+...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998765
No 145
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.71 E-value=0.0062 Score=50.80 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=20.0
Q ss_pred EEEEEECCCCCcHHHHHHHHhc
Q 040110 113 SVVAILDSRGFDKTAFAAEIYN 134 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~ 134 (348)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 146
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.71 E-value=0.036 Score=47.82 Aligned_cols=90 Identities=16% Similarity=0.104 Sum_probs=50.9
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc---------c-------
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYNFKRILDDIMKSLMPTSSWL---------K------- 175 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---------~------- 175 (348)
-.++.|.|.+|+||||||.+++... ...=..++|++... ...++...+ ..++...... .
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e~--~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~~~~~ 97 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALEE--HPVQVRQNM-AQFGWDVKPYEEKGMFAMVDAFTAGIG 97 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESSS--CHHHHHHHH-HTTTCCCHHHHHHTSEEEEECSTTTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccC--CHHHHHHHH-HHcCCCHHHHhhCCcEEEEecchhhcc
Confidence 3478999999999999998876552 11112566766443 344444333 2333221000 0
Q ss_pred ----------cCCCCHHHHHHHHHHHhcC-CeEEEEEeCCCC
Q 040110 176 ----------IMGKDYKSEKTILRDYLTN-KKYFTVLDDVWI 206 (348)
Q Consensus 176 ----------~~~~~~~~~~~~l~~~L~~-kr~LlVLDdv~~ 206 (348)
....+..++...+.+.++. +.-++|+|.+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~ 139 (247)
T 2dr3_A 98 KSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTT 139 (247)
T ss_dssp C--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGG
T ss_pred cccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchH
Confidence 0123555666667666642 445899998853
No 147
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.69 E-value=0.0059 Score=51.29 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 040110 114 VVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.|+|.|+.|+||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5889999999999999999876
No 148
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.69 E-value=0.0052 Score=51.88 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=20.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhc
Q 040110 113 SVVAILDSRGFDKTAFAAEIYN 134 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~ 134 (348)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999987
No 149
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.67 E-value=0.0051 Score=50.89 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=21.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..+|.|.|++|+||||+++.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 456889999999999999999866
No 150
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.66 E-value=0.005 Score=51.43 Aligned_cols=23 Identities=13% Similarity=0.339 Sum_probs=20.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999865
No 151
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.66 E-value=0.0068 Score=51.30 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=20.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhc
Q 040110 113 SVVAILDSRGFDKTAFAAEIYN 134 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~ 134 (348)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 152
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.65 E-value=0.0075 Score=50.86 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.8
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...+|.|.|++|+||||+|+.+...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999875
No 153
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.65 E-value=0.0055 Score=51.95 Aligned_cols=25 Identities=8% Similarity=0.220 Sum_probs=21.8
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...++.|+|++|+|||||++.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457889999999999999999876
No 154
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.65 E-value=0.015 Score=55.83 Aligned_cols=50 Identities=12% Similarity=0.222 Sum_probs=33.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCccccCCc-ceeEEEEeCCCC-CHHHHHHHHHH
Q 040110 114 VVAILDSRGFDKTAFAAEIYNNNFVKFYF-DCHAWVRVSNFY-NFKRILDDIMK 165 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~~~~~~~F-~~~~wv~~~~~~-~~~~~~~~i~~ 165 (348)
.++|+|.+|+|||||+..+..+ ....+ +.++++.+++.. ...+++.++..
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~--~~~~~~~i~V~~~iGerttev~el~~~l~~ 204 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHN--IAQEHGGISVFAGVGERTREGNDLYHEMKD 204 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHH--HHHHTCCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhh--hhhccCcEEEEeeeccCchHHHHHHHHhhh
Confidence 4789999999999999998877 33222 345666666654 34455555543
No 155
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.65 E-value=0.0075 Score=50.23 Aligned_cols=24 Identities=25% Similarity=0.219 Sum_probs=21.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...|.|+|+.|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999999998865
No 156
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.62 E-value=0.0063 Score=50.80 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=21.5
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..+|.|.|+.|+||||+|+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999865
No 157
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.59 E-value=0.00096 Score=56.09 Aligned_cols=23 Identities=13% Similarity=-0.070 Sum_probs=19.1
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++.|+|+.|+||||++..++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999766654
No 158
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.57 E-value=0.0077 Score=49.91 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..|.+.|+.|+||||+++.+.+.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999999865
No 159
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.55 E-value=0.0073 Score=50.29 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 040110 114 VVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998765
No 160
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.54 E-value=0.0081 Score=53.13 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=21.5
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468899999999999999999875
No 161
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.54 E-value=0.046 Score=49.31 Aligned_cols=90 Identities=12% Similarity=-0.024 Sum_probs=47.4
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCCHH--HHHHHHHHHhCCCCCccccCCCCHHHHHH-H
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYNFK--RILDDIMKSLMPTSSWLKIMGKDYKSEKT-I 187 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-~ 187 (348)
...+++++|.+|+||||++..++....... ..+.++... ..... ..+..+....+...-. .....+..++.. .
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~--~~v~l~~~d-~~~~~~~~ql~~~~~~~~l~~~~-~~~~~~p~~l~~~~ 172 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAAD-TQRPAAREQLRLLGEKVGVPVLE-VMDGESPESIRRRV 172 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTT--CCEEEEECC-SSCHHHHHHHHHHHHHHTCCEEE-CCTTCCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEecCC-cccHhHHHHHHHhcccCCeEEEE-cCCCCCHHHHHHHH
Confidence 567899999999999999999887632211 123344332 22221 2233444445443111 111234555543 3
Q ss_pred HHHHhcCCeEEEEEeCC
Q 040110 188 LRDYLTNKKYFTVLDDV 204 (348)
Q Consensus 188 l~~~L~~kr~LlVLDdv 204 (348)
+......+.=++|+|-.
T Consensus 173 l~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 173 EEKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHHTCCEEEEECC
T ss_pred HHHHHhCCCCEEEEeCC
Confidence 33333344457778875
No 162
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.52 E-value=0.01 Score=53.35 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=22.6
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
....++.|.|++|+||||+|+.+...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578889999999999999999865
No 163
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.52 E-value=0.071 Score=51.78 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=21.3
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...++|+|+|.+|+||||++..+...
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45779999999999999999998744
No 164
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.52 E-value=0.0087 Score=50.54 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=21.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+|.|.|++|+||||+|+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57899999999999999999876
No 165
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.51 E-value=0.0082 Score=50.67 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=23.2
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
....+|+|+|+.|+||||+++.+...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999998865
No 166
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.50 E-value=0.011 Score=49.08 Aligned_cols=25 Identities=24% Similarity=0.177 Sum_probs=22.3
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...+|.|.|++|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568899999999999999999876
No 167
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.50 E-value=0.0052 Score=51.65 Aligned_cols=22 Identities=14% Similarity=0.357 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 040110 114 VVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.|.|.|++|+|||||++.+...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999998766
No 168
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.49 E-value=0.0063 Score=49.75 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+|.|.|+.|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999875
No 169
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.49 E-value=0.0068 Score=51.28 Aligned_cols=51 Identities=16% Similarity=0.031 Sum_probs=30.5
Q ss_pred HHHHHHHHhcC-CeEEEEEeCCCCh-----hhHHHHHhhCCCCCCCcEEEEEeCChh
Q 040110 184 EKTILRDYLTN-KKYFTVLDDVWIE-----KIWDDLREALPDNQIGSRALITVGPHN 234 (348)
Q Consensus 184 ~~~~l~~~L~~-kr~LlVLDdv~~~-----~~~~~l~~~l~~~~~gskIlvTTR~~~ 234 (348)
.....++.+.+ +-=|||||++-.. -..+++...+.......-||+|+|+..
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 44445556644 4569999998431 233444444433334567999999853
No 170
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.48 E-value=0.0097 Score=49.39 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=21.6
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 171
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.48 E-value=0.0055 Score=50.84 Aligned_cols=22 Identities=9% Similarity=0.181 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 040110 114 VVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
+|.|.|++|+||||+|+.+...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999875
No 172
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.48 E-value=0.0061 Score=51.60 Aligned_cols=23 Identities=13% Similarity=0.339 Sum_probs=20.4
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
++++|+|+.|+|||||++.+...
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999998764
No 173
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.47 E-value=0.0081 Score=52.51 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=21.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..+++|+|+.|+|||||++.+...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999844
No 174
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.47 E-value=0.0074 Score=49.67 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 040110 114 VVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.|.|.|++|+||||+|+.+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999876
No 175
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.44 E-value=0.0073 Score=50.55 Aligned_cols=23 Identities=13% Similarity=0.284 Sum_probs=21.0
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+|+|.|++|+||||+|+.+...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999876
No 176
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.42 E-value=0.012 Score=53.72 Aligned_cols=27 Identities=11% Similarity=0.074 Sum_probs=23.6
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 109 QPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 109 ~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...+.+++|.|+.|+|||||++.+...
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456779999999999999999998765
No 177
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.41 E-value=0.012 Score=50.72 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=24.0
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 109 QPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 109 ~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
-...++|.|.|++|+||||+|+.+...
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356789999999999999999999876
No 178
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.41 E-value=0.01 Score=51.93 Aligned_cols=25 Identities=8% Similarity=0.125 Sum_probs=22.0
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...+++|.|+.|+|||||++.+...
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999998764
No 179
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.41 E-value=0.0088 Score=49.42 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=22.0
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...+++|.|..|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999876
No 180
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.41 E-value=0.0055 Score=59.62 Aligned_cols=43 Identities=19% Similarity=0.089 Sum_probs=35.7
Q ss_pred cccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
.++|++..+ +.+...+. .. .-+.++|++|+|||+||+.+++..
T Consensus 23 ~ivGq~~~i---~~l~~al~------~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYERSHAI---RLCLLAAL------SG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSCHHHH---HHHHHHHH------HT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHHHHHH---HHHHHHHh------cC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 689999999 88888777 11 247789999999999999999873
No 181
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.40 E-value=0.009 Score=48.59 Aligned_cols=22 Identities=5% Similarity=0.028 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 040110 114 VVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999875
No 182
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.37 E-value=0.0034 Score=57.45 Aligned_cols=42 Identities=14% Similarity=0.142 Sum_probs=35.0
Q ss_pred cccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|++..+ +.+...+. . . .-+.++|++|+|||+||+.+.+.
T Consensus 28 ~i~g~~~~~---~~l~~~l~----~--~--~~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 28 VVVGQKYMI---NRLLIGIC----T--G--GHILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp TCCSCHHHH---HHHHHHHH----H--T--CCEEEESCCCHHHHHHHHHHHHH
T ss_pred ceeCcHHHH---HHHHHHHH----c--C--CeEEEECCCCCcHHHHHHHHHHH
Confidence 689999999 88888877 1 1 24678999999999999999886
No 183
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.36 E-value=0.0089 Score=49.70 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 040110 114 VVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
+|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999875
No 184
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.36 E-value=0.0093 Score=51.08 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=21.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...|.|.|++|+||||+|+.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347889999999999999999876
No 185
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.35 E-value=0.011 Score=53.94 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=22.8
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
....+++|.|+.|+|||||++.+..-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 35579999999999999999998765
No 186
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.33 E-value=0.017 Score=48.11 Aligned_cols=22 Identities=9% Similarity=0.043 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 040110 114 VVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999876
No 187
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.33 E-value=0.006 Score=50.37 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=17.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..+|.|.|+.|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999999999866
No 188
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.33 E-value=0.0094 Score=50.64 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=20.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||++.+..-
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 48999999999999999998765
No 189
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.33 E-value=0.011 Score=52.11 Aligned_cols=27 Identities=11% Similarity=0.036 Sum_probs=23.2
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 109 QPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 109 ~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.....++.|.|++|+||||+|+.+...
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 344578899999999999999999876
No 190
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.32 E-value=0.015 Score=54.47 Aligned_cols=40 Identities=10% Similarity=-0.147 Sum_probs=26.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcccc-CCcceeEEEEeCCCC
Q 040110 114 VVAILDSRGFDKTAFAAEIYNNNFVK-FYFDCHAWVRVSNFY 154 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~~~~~-~~F~~~~wv~~~~~~ 154 (348)
.++|+|.+|+|||||++.+.+....+ ..+. ++++-+++..
T Consensus 176 r~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~ 216 (422)
T 3ice_A 176 RGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERP 216 (422)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCH
T ss_pred EEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCCh
Confidence 68899999999999999887652111 1222 3456666543
No 191
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.30 E-value=0.012 Score=48.63 Aligned_cols=24 Identities=17% Similarity=0.122 Sum_probs=21.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
-.+|+|.|+.|+||||+++.+...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999875
No 192
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.26 E-value=0.031 Score=47.66 Aligned_cols=57 Identities=16% Similarity=0.214 Sum_probs=34.9
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcCcccc---C-CcceeEEEEeCCCCCHHHHHHHHHHHhC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNNNFVK---F-YFDCHAWVRVSNFYNFKRILDDIMKSLM 168 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~---~-~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 168 (348)
.-.+++|+|+.|+|||||++.++...... . .-...+|+.-...+.... +..+...++
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~ 84 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRG 84 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcC
Confidence 34689999999999999999997631111 1 123577776554444333 333444443
No 193
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.24 E-value=0.01 Score=50.35 Aligned_cols=25 Identities=4% Similarity=0.308 Sum_probs=21.9
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..++++|+|+.|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3468899999999999999999865
No 194
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.21 E-value=0.012 Score=49.87 Aligned_cols=24 Identities=4% Similarity=-0.053 Sum_probs=21.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..+|+|.|+.|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999876
No 195
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.20 E-value=0.01 Score=50.23 Aligned_cols=24 Identities=4% Similarity=0.099 Sum_probs=21.6
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..+|.|.|+.|+||||+|+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999876
No 196
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.19 E-value=0.012 Score=52.64 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=22.1
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhc
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYN 134 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~ 134 (348)
..+.+|+|.|+.|+||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999883
No 197
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.18 E-value=0.012 Score=51.79 Aligned_cols=24 Identities=13% Similarity=0.248 Sum_probs=21.5
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..+|+|+|+.|+||||+++.+...
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999855
No 198
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.17 E-value=0.012 Score=49.40 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=21.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+|+|.|+.|+||||+++.+...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999999887
No 199
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.15 E-value=0.0046 Score=56.78 Aligned_cols=44 Identities=16% Similarity=0.108 Sum_probs=31.4
Q ss_pred cccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|.+... +.+...+.. .. ..-+.|+|++|+|||+||+.+++.
T Consensus 25 ~i~G~~~~~---~~l~~~~~~----~~--~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 25 AIVGQEDMK---LALLLTAVD----PG--IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GSCSCHHHH---HHHHHHHHC----GG--GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hccChHHHH---HHHHHHhhC----CC--CceEEEECCCCccHHHHHHHHHHh
Confidence 789988866 554444331 11 112778999999999999999875
No 200
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.14 E-value=0.0087 Score=51.45 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||++.+...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999998865
No 201
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.12 E-value=0.015 Score=49.71 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.8
Q ss_pred cEEEEEECCCCCcHHHHHHHHhc
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYN 134 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~ 134 (348)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 202
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.10 E-value=0.011 Score=51.03 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=21.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...|.|.|++|+||||+|+.+...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999876
No 203
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.09 E-value=0.012 Score=50.13 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 040110 114 VVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4779999999999999999765
No 204
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.08 E-value=0.014 Score=52.95 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.9
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...+++|+|++|+||||++..++..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4569999999999999999998754
No 205
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.05 E-value=0.021 Score=47.30 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=22.1
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.....|+|+|.+|+|||||...+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34457889999999999999999876
No 206
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.04 E-value=0.015 Score=50.79 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=22.1
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
....|.|.|++|+||||+|+.+.+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999999999865
No 207
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.03 E-value=0.011 Score=51.67 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 040110 115 VAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 115 i~I~G~gGvGKTtLA~~v~~~ 135 (348)
+.|+|++|+|||||++.+++.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999987
No 208
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.02 E-value=0.013 Score=50.55 Aligned_cols=24 Identities=8% Similarity=0.227 Sum_probs=21.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
-.+++|+|+.|+|||||.+.+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999875
No 209
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.00 E-value=0.013 Score=49.89 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 040110 114 VVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.|+|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999999765
No 210
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.95 E-value=0.016 Score=47.19 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
-.+++|+|+.|.|||||++.+..-
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999998865
No 211
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.94 E-value=0.076 Score=51.29 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=22.8
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
....+++|+|..|+|||||++.++..
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHH
Confidence 34679999999999999999998865
No 212
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.94 E-value=0.011 Score=50.64 Aligned_cols=24 Identities=17% Similarity=-0.014 Sum_probs=21.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...|.|.|++|+||||+++.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999999876
No 213
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.92 E-value=0.014 Score=50.53 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHhc
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYN 134 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~ 134 (348)
-.+++|+|+.|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 35899999999999999998873
No 214
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.91 E-value=0.012 Score=54.86 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..+.++|++|+|||++|+.+++.
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
Confidence 34778999999999999999987
No 215
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.91 E-value=0.0065 Score=51.55 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 040110 114 VVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
+|+|.|+.|+||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6889999999999999998765
No 216
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.90 E-value=0.017 Score=49.07 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=21.6
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..+|.|.|+.|+||||+++.+...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999999999876
No 217
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.85 E-value=0.018 Score=52.26 Aligned_cols=26 Identities=15% Similarity=0.097 Sum_probs=22.7
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
....+++|+|+.|+|||||++.+...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34579999999999999999998875
No 218
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.80 E-value=0.016 Score=48.76 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 040110 114 VVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
+|+|.|+.|+||||+|+.+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999875
No 219
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.74 E-value=0.01 Score=51.23 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=15.8
Q ss_pred EEEEEECCCCCcHHHHHHHHh-cC
Q 040110 113 SVVAILDSRGFDKTAFAAEIY-NN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~-~~ 135 (348)
.+++|+|+.|+|||||++.+. ..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 589999999999999999998 54
No 220
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.73 E-value=0.0091 Score=49.42 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=20.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|..|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998766
No 221
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.72 E-value=0.013 Score=50.07 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=20.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..|.|.|++|+||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999876
No 222
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.70 E-value=0.017 Score=50.39 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=20.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||.+.+..-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 47999999999999999998754
No 223
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.69 E-value=0.018 Score=50.37 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||.+.+..-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999998754
No 224
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.69 E-value=0.14 Score=49.73 Aligned_cols=51 Identities=8% Similarity=0.084 Sum_probs=33.8
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCCHHHHHHHHHH
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYNFKRILDDIMK 165 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 165 (348)
-.++.|.|.+|+||||||.+++.+...... ..++|++... +..++...++.
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g-~~vl~~s~E~--s~~~l~~r~~~ 292 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMG-KKVGLAMLEE--SVEETAEDLIG 292 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSC-CCEEEEESSS--CHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcC-CcEEEEeccC--CHHHHHHHHHH
Confidence 347788999999999999998876322211 2466776543 45566665543
No 225
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.69 E-value=0.13 Score=48.95 Aligned_cols=50 Identities=22% Similarity=0.089 Sum_probs=33.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCCHHHHHHHHHH
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYNFKRILDDIMK 165 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 165 (348)
.++.|.|.+|+||||||..++.+...... ..++|++.. -+..++...++.
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~~g-~~vl~~slE--~~~~~l~~R~~~ 250 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALKEG-VGVGIYSLE--MPAAQLTLRMMC 250 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTC-CCEEEEESS--SCHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEECC--CCHHHHHHHHHH
Confidence 47888999999999999998876322111 246676554 345566666553
No 226
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.65 E-value=0.016 Score=51.52 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=31.8
Q ss_pred cccccccccccHHHHHhhcCCCC---C-CCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSS---G-LGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~---~-~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
+++|.+.....++.+...+.... . .-.-... +.|+|++|+|||||++.+++.
T Consensus 41 ~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 41 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp GSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHH
Confidence 78888877722233333221000 0 0011223 889999999999999999987
No 227
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.61 E-value=0.053 Score=60.63 Aligned_cols=88 Identities=13% Similarity=0.020 Sum_probs=55.7
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc-ccCCCCHHHHHHHHH
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYNFKRILDDIMKSLMPTSSWL-KIMGKDYKSEKTILR 189 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~l~ 189 (348)
..+.+.|+|++|+|||+||.++........ ..++|+++...++... ++.++.+.... -......++....+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G--~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 456788999999999999999876522221 2567888777776655 44555321110 111223345555555
Q ss_pred HHhc-CCeEEEEEeCCC
Q 040110 190 DYLT-NKKYFTVLDDVW 205 (348)
Q Consensus 190 ~~L~-~kr~LlVLDdv~ 205 (348)
...+ .+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 5543 467899999994
No 228
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.60 E-value=0.016 Score=53.68 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=21.4
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
....+.|+|++|+||||+++.++..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHH
Confidence 4556889999999999999988765
No 229
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.60 E-value=0.14 Score=44.07 Aligned_cols=93 Identities=14% Similarity=0.054 Sum_probs=49.0
Q ss_pred EEEEEECCCCCcHHHHHHHHh-cCccccCCcc-eeEEEEeCCCCCHHHHHHHHHHHhCCCCCc----------------c
Q 040110 113 SVVAILDSRGFDKTAFAAEIY-NNNFVKFYFD-CHAWVRVSNFYNFKRILDDIMKSLMPTSSW----------------L 174 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~-~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----------------~ 174 (348)
..+.|.|..|+||||+...+. +......... ..+.+.........++.+.+...++..... .
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 368899999999998665443 2211112222 233333333333345555555554432110 0
Q ss_pred ccCCCCHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 040110 175 KIMGKDYKSEKTILRDYLTNKKYFTVLDDVWI 206 (348)
Q Consensus 175 ~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~ 206 (348)
..--.+...+...+...+.+ --+||+|.+..
T Consensus 157 ~Ivv~Tpg~l~~~l~~~l~~-~~~lVlDEah~ 187 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEAGIRG-ISHVIVDEIHE 187 (235)
T ss_dssp EEEEEEHHHHHHHHHHCCTT-CCEEEECCTTS
T ss_pred eEEEECHHHHHHHHHhhhcC-CcEEEEECCcc
Confidence 11123566677777665544 34788999976
No 230
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.59 E-value=0.017 Score=48.61 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 040110 114 VVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
+++|+|+.|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5889999999999999998765
No 231
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.58 E-value=0.02 Score=47.41 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=22.1
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...+++|.|..|+|||||+..+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3568999999999999999998876
No 232
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.58 E-value=0.011 Score=53.30 Aligned_cols=25 Identities=12% Similarity=0.258 Sum_probs=19.0
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...+|+|.|..|+||||+|+.+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998764
No 233
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.57 E-value=0.015 Score=51.23 Aligned_cols=23 Identities=13% Similarity=0.133 Sum_probs=20.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+|+|+|+.|+||||+++.+...
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999999875
No 234
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.57 E-value=0.017 Score=49.85 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=20.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||.+.+..-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998754
No 235
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.56 E-value=0.06 Score=51.57 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=32.1
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCCHHHHHHHHH
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYNFKRILDDIM 164 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 164 (348)
.++.|.|.+|+||||||..++........ ..++|++... +..++...++
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~g-~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATKTN-ENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHHSS-CCEEEEESSS--CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhCC-CcEEEEECCC--CHHHHHHHHH
Confidence 47889999999999999998876322111 1466765433 3445555443
No 236
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.55 E-value=0.023 Score=51.50 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=21.9
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...+++|+|+.|+||||++..++..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4579999999999999999988754
No 237
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.55 E-value=0.022 Score=48.66 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=22.2
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
....|+|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678899999999999999998876
No 238
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.47 E-value=0.027 Score=52.20 Aligned_cols=27 Identities=15% Similarity=0.097 Sum_probs=23.1
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 109 QPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 109 ~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.....+|+|+|.+|+|||||+..+...
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 346779999999999999999988755
No 239
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.46 E-value=0.024 Score=49.05 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...|.|.|+.|+||||+|+.+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999876
No 240
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.46 E-value=0.022 Score=49.63 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.5
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..+++|.|++|+||||+|+.+...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999866
No 241
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.45 E-value=0.023 Score=51.00 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=20.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47889999999999999999873
No 242
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.44 E-value=0.032 Score=53.24 Aligned_cols=105 Identities=11% Similarity=0.148 Sum_probs=57.5
Q ss_pred HHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcCccccC-Ccc-eeEEEEeCCCC-CHHHHHHHHHHHhCCCCC
Q 040110 96 NLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNNNFVKF-YFD-CHAWVRVSNFY-NFKRILDDIMKSLMPTSS 172 (348)
Q Consensus 96 ~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~-~F~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~ 172 (348)
+.++.|.+- ..+- .++|.|..|+|||+|+.++.+...... +=+ .++++-+++.. .+.++++++...=.....
T Consensus 140 raID~l~pi----grGQ-r~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rt 214 (465)
T 3vr4_D 140 SAIDHLNTL----VRGQ-KLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRS 214 (465)
T ss_dssp HHHHTTSCC----BTTC-BCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGE
T ss_pred eEEeccccc----ccCC-EEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccce
Confidence 556666632 2222 267899999999999999988743311 111 56666666543 456666665543111100
Q ss_pred c--cccCCCCHHHH------HHHHHHHhc---CCeEEEEEeCCC
Q 040110 173 W--LKIMGKDYKSE------KTILRDYLT---NKKYFTVLDDVW 205 (348)
Q Consensus 173 ~--~~~~~~~~~~~------~~~l~~~L~---~kr~LlVLDdv~ 205 (348)
. ....+...... .-.+.++++ ++.+||++||+-
T Consensus 215 vvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 215 VMFMNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 0 01122222211 112445553 689999999984
No 243
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.44 E-value=0.023 Score=49.21 Aligned_cols=26 Identities=19% Similarity=0.088 Sum_probs=22.5
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
....+|+|.|+.|+||||+++.+...
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999998875
No 244
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.44 E-value=0.022 Score=48.96 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 040110 114 VVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999876
No 245
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.44 E-value=0.021 Score=49.82 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=21.0
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||.+.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999866
No 246
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.43 E-value=0.021 Score=50.60 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||.+.+..-
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998754
No 247
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.42 E-value=0.023 Score=52.31 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=21.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+|+|.|+.|+||||||..++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999998876
No 248
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.41 E-value=0.018 Score=49.20 Aligned_cols=22 Identities=27% Similarity=0.137 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 040110 114 VVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
+++|+|+.|+|||||++.+..-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999998753
No 249
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.40 E-value=0.037 Score=45.49 Aligned_cols=25 Identities=8% Similarity=0.186 Sum_probs=21.7
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
....|+++|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457889999999999999999874
No 250
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.39 E-value=0.022 Score=50.93 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||++.+..-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999998754
No 251
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.35 E-value=0.03 Score=51.44 Aligned_cols=24 Identities=8% Similarity=0.361 Sum_probs=21.8
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..+|.|+|+.|+||||||..++..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999877
No 252
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.34 E-value=0.021 Score=48.59 Aligned_cols=22 Identities=18% Similarity=0.090 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 040110 114 VVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999876
No 253
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.34 E-value=0.035 Score=48.54 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=22.2
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
....++.+.|.||+||||++..+...
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 44678888999999999999999855
No 254
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.33 E-value=0.026 Score=48.03 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=22.8
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
....+++|+|.+|+|||||+..+...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999998876
No 255
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.31 E-value=0.027 Score=46.93 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=21.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
...++|+|..|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998763
No 256
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.31 E-value=0.026 Score=53.53 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=23.3
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 109 QPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 109 ~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.....+|.|+|++|+||||+|+.+...
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 345678999999999999999999876
No 257
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.31 E-value=0.023 Score=50.46 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||++.+..-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 47999999999999999999764
No 258
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.30 E-value=0.028 Score=50.75 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=22.0
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 109 QPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 109 ~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
....++|+|+|-||+||||+|..++..
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~ 64 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAA 64 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHH
Confidence 456788999999999999999888765
No 259
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.29 E-value=0.046 Score=47.29 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=22.7
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
.-.+|.|.|+.|+||||+++.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44688999999999999999998873
No 260
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.29 E-value=0.023 Score=49.58 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||.+.++.-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999998754
No 261
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.28 E-value=0.038 Score=44.68 Aligned_cols=23 Identities=9% Similarity=0.203 Sum_probs=20.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..++|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999865
No 262
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.28 E-value=0.026 Score=49.36 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=21.0
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
-.+++|+|+.|+|||||.+.++.-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998754
No 263
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.27 E-value=0.025 Score=48.21 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 040110 114 VVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
+|.|.|++|+||+|+|+.+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5778999999999999999876
No 264
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.27 E-value=0.024 Score=50.11 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||.+.++.-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998654
No 265
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.26 E-value=0.025 Score=49.69 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||.+.+..-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999874
No 266
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.23 E-value=0.17 Score=47.27 Aligned_cols=36 Identities=22% Similarity=0.171 Sum_probs=26.4
Q ss_pred HHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 95 RNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 95 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
-++++.|.+- ..+- .++|+|.+|+|||+|+..+.+.
T Consensus 163 iraID~l~Pi----grGQ-R~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 163 TRLIDLFAPI----GKGQ-RGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp HHHHHHHSCC----BTTC-EEEEEECTTCCHHHHHHHHHHH
T ss_pred chhhhhcccc----cCCc-eEEEecCCCCChhHHHHHHHHH
Confidence 4566777632 2222 5789999999999999988876
No 267
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.22 E-value=0.033 Score=44.32 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=20.4
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..|.++|.+|+|||||...+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999866
No 268
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.21 E-value=0.025 Score=50.17 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||.+.+..-
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Confidence 48999999999999999998754
No 269
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.20 E-value=0.026 Score=48.93 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=21.0
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||.+.++.-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999876
No 270
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.20 E-value=0.025 Score=49.64 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||.+.+..-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998765
No 271
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.18 E-value=0.097 Score=58.60 Aligned_cols=88 Identities=13% Similarity=0.026 Sum_probs=58.5
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc-ccCCCCHHHHHHHHH
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYNFKRILDDIMKSLMPTSSWL-KIMGKDYKSEKTILR 189 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~l~ 189 (348)
.-+++.|.|.+|+||||||.+++... ...=..++|++.....+.. .++.++.+.... -.+..+.+++...+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~--a~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 34588899999999999999998763 2222367888887777654 255666543221 112346677777776
Q ss_pred HHh-cCCeEEEEEeCCC
Q 040110 190 DYL-TNKKYFTVLDDVW 205 (348)
Q Consensus 190 ~~L-~~kr~LlVLDdv~ 205 (348)
... +.+.-++|+|.+.
T Consensus 455 ~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCcEEEECCHH
Confidence 554 3456799999985
No 272
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.15 E-value=0.033 Score=50.62 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..+|.|.|+.|+||||||..++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 357899999999999999999876
No 273
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.15 E-value=0.069 Score=51.45 Aligned_cols=101 Identities=15% Similarity=0.149 Sum_probs=56.1
Q ss_pred HHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHH-HHHhcCccccCCcc-eeEEEEeCCCC-CHHHHHHHHHHHhCCCCC
Q 040110 96 NLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFA-AEIYNNNFVKFYFD-CHAWVRVSNFY-NFKRILDDIMKSLMPTSS 172 (348)
Q Consensus 96 ~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA-~~v~~~~~~~~~F~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~ 172 (348)
+.++.|.+- ..+- .++|.|.+|+|||+|| ..+.+.. .-+ .++++-+++.. .+.++.+++...=.....
T Consensus 151 raID~l~Pi----grGQ-R~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~t 221 (502)
T 2qe7_A 151 KAIDSMIPI----GRGQ-RELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYT 221 (502)
T ss_dssp HHHHHSSCC----BTTC-BCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTE
T ss_pred eeccccccc----ccCC-EEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCccee
Confidence 556666632 1222 3678999999999995 4677762 234 34667777654 455666666653222211
Q ss_pred cc--ccCCCCHHHH------HHHHHHHh--cCCeEEEEEeCCC
Q 040110 173 WL--KIMGKDYKSE------KTILRDYL--TNKKYFTVLDDVW 205 (348)
Q Consensus 173 ~~--~~~~~~~~~~------~~~l~~~L--~~kr~LlVLDdv~ 205 (348)
.. ...+...... .-.+-+++ .++.+|+++||+-
T Consensus 222 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 222 IVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 10 1111221111 11233444 4689999999984
No 274
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.13 E-value=0.028 Score=49.95 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=21.0
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||.+.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999874
No 275
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.12 E-value=0.022 Score=48.84 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||.+.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999998765
No 276
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.11 E-value=0.027 Score=46.51 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 040110 114 VVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
-|+|+|.+|+|||||...+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 277
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.11 E-value=0.027 Score=49.72 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=20.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||.+.++.-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999765
No 278
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.10 E-value=0.03 Score=51.17 Aligned_cols=23 Identities=13% Similarity=0.250 Sum_probs=21.1
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+|.|+|+.|+||||||+.++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999876
No 279
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.09 E-value=0.032 Score=51.77 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=22.4
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
....+++|+|+.|+||||++..++..
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhh
Confidence 34679999999999999999988764
No 280
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.08 E-value=0.083 Score=58.29 Aligned_cols=89 Identities=12% Similarity=0.001 Sum_probs=58.8
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc-ccCCCCHHHHHHHHH
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYNFKRILDDIMKSLMPTSSWL-KIMGKDYKSEKTILR 189 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~l~ 189 (348)
.-+++.|.|.+|+||||||.+++.... ..=..++|++....++.. .++.++.+.... -....+.+++...+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~--~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 345888999999999999999876632 222368888888777753 256666543221 122345666666666
Q ss_pred HHhc-CCeEEEEEeCCCC
Q 040110 190 DYLT-NKKYFTVLDDVWI 206 (348)
Q Consensus 190 ~~L~-~kr~LlVLDdv~~ 206 (348)
...+ .+.-++|+|.+..
T Consensus 455 ~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHTCCSEEEESCSTT
T ss_pred HHHHhcCCCEEEECCHHH
Confidence 5553 4567999999864
No 281
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.08 E-value=0.025 Score=48.22 Aligned_cols=24 Identities=8% Similarity=0.127 Sum_probs=20.9
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...+.|+|++|+||||+|..+++.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHH
Confidence 345889999999999999998876
No 282
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.07 E-value=0.027 Score=50.16 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||.+.++.-
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999765
No 283
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.06 E-value=0.031 Score=48.26 Aligned_cols=26 Identities=19% Similarity=0.132 Sum_probs=22.5
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..-.+++|.|+.|+|||||++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34568999999999999999998765
No 284
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.05 E-value=0.028 Score=49.76 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||.+.+..-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 48999999999999999999765
No 285
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.00 E-value=0.054 Score=43.91 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=21.5
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
....|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4556889999999999999999765
No 286
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.99 E-value=0.03 Score=49.26 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=20.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||.+.++.-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 37899999999999999998765
No 287
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.97 E-value=0.21 Score=47.69 Aligned_cols=38 Identities=24% Similarity=0.111 Sum_probs=27.4
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSN 152 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~ 152 (348)
.++.|.|.+|+||||||.+++.+..... ..++|++...
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSlEm 235 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEM 235 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECSSS
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEECCC
Confidence 4788899999999999999887732221 2566765543
No 288
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.96 E-value=0.037 Score=50.58 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=23.0
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
....+++|+|.+|+||||++..++..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999998866
No 289
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.94 E-value=0.031 Score=46.70 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=21.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...++|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999999876
No 290
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.94 E-value=0.03 Score=49.71 Aligned_cols=23 Identities=9% Similarity=0.131 Sum_probs=20.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||.+.++.-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 47999999999999999998754
No 291
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.92 E-value=0.038 Score=48.92 Aligned_cols=109 Identities=12% Similarity=0.119 Sum_probs=58.7
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCCHHHHHH---HHHH--HhCCCCCccccCCCCHHHHH
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYNFKRILD---DIMK--SLMPTSSWLKIMGKDYKSEK 185 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~---~i~~--~l~~~~~~~~~~~~~~~~~~ 185 (348)
.-.+++|+|+.|+|||||++.+..- +...+...+.+. ..+... +.. .+.. .++. .. ..+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~-g~~i~~--~~~~~~~~v~q~~~gl-------~~---~~l~ 88 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITI-EDPIEY--VFKHKKSIVNQREVGE-------DT---KSFA 88 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEE-ESSCCS--CCCCSSSEEEEEEBTT-------TB---SCHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEc-CCccee--ecCCcceeeeHHHhCC-------CH---HHHH
Confidence 3458999999999999999998765 221112333221 111000 000 0000 0000 11 2234
Q ss_pred HHHHHHhcCCeEEEEEeCCCChhhHHHHHhhCCCCCCCcEEEEEeCChhhhh
Q 040110 186 TILRDYLTNKKYFTVLDDVWIEKIWDDLREALPDNQIGSRALITVGPHNILT 237 (348)
Q Consensus 186 ~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~l~~~~~gskIlvTTR~~~v~~ 237 (348)
..+.+.|...+=+|++|...+.+....+.... ..|.-|++||-+.++..
T Consensus 89 ~~la~aL~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~~~ 137 (261)
T 2eyu_A 89 DALRAALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAID 137 (261)
T ss_dssp HHHHHHHHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSHHH
T ss_pred HHHHHHHhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchHHH
Confidence 56677776677788999997554443333322 23566888888766543
No 292
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.92 E-value=0.037 Score=46.84 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=20.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
+.+.|.|++|+||||||..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999999999999876
No 293
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.92 E-value=0.042 Score=49.85 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=22.1
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...++.|.|+.|+||||||..++..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 3568899999999999999999865
No 294
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.91 E-value=0.031 Score=49.23 Aligned_cols=124 Identities=12% Similarity=0.078 Sum_probs=63.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcccc-CC---cceeEEEEeCC----CCCH----------------------HHHHHH
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNNNFVK-FY---FDCHAWVRVSN----FYNF----------------------KRILDD 162 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~~~~~-~~---F~~~~wv~~~~----~~~~----------------------~~~~~~ 162 (348)
.+++|+|+.|+|||||.+.++.-.... .. ...+.++.-.. ..++ .+-..+
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~ 111 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQ 111 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHH
Confidence 378999999999999999998652111 00 01122221110 0011 122345
Q ss_pred HHHHhCCCCCc-cccCCCCHHHHH-HHHHHHhcCCeEEEEEeCCCCh------hhHHHHHhhCCCCCCCcEEEEEeCChh
Q 040110 163 IMKSLMPTSSW-LKIMGKDYKSEK-TILRDYLTNKKYFTVLDDVWIE------KIWDDLREALPDNQIGSRALITVGPHN 234 (348)
Q Consensus 163 i~~~l~~~~~~-~~~~~~~~~~~~-~~l~~~L~~kr~LlVLDdv~~~------~~~~~l~~~l~~~~~gskIlvTTR~~~ 234 (348)
+++.++..... .....-+..+.+ -.|.+.|-.++-+|+||..-+. ..+..+...+.. ..|..||++|.+..
T Consensus 112 ~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~~g~tvi~vtHd~~ 190 (253)
T 2nq2_C 112 ALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQ-SQNMTVVFTTHQPN 190 (253)
T ss_dssp HHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHH-TSCCEEEEEESCHH
T ss_pred HHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHH
Confidence 55555543110 011222333322 3455666677889999997653 122222222211 22566888888866
Q ss_pred hhh
Q 040110 235 ILT 237 (348)
Q Consensus 235 v~~ 237 (348)
.+.
T Consensus 191 ~~~ 193 (253)
T 2nq2_C 191 QVV 193 (253)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 295
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=93.90 E-value=0.06 Score=51.96 Aligned_cols=89 Identities=18% Similarity=0.176 Sum_probs=50.0
Q ss_pred EEEEECCCCCcHHHHH-HHHhcCccccCCcc-eeEEEEeCCCC-CHHHHHHHHHHHhCCCCCcc--ccCCCCHHHH----
Q 040110 114 VVAILDSRGFDKTAFA-AEIYNNNFVKFYFD-CHAWVRVSNFY-NFKRILDDIMKSLMPTSSWL--KIMGKDYKSE---- 184 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA-~~v~~~~~~~~~F~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~---- 184 (348)
.++|.|.+|+|||+|| ..+.+. . .-+ .++++-+++.. .+.++.+++...=....... ...+......
T Consensus 177 R~~I~g~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~ 252 (515)
T 2r9v_A 177 RELIIGDRQTGKTAIAIDTIINQ--K--GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAP 252 (515)
T ss_dssp BEEEEEETTSSHHHHHHHHHHTT--T--TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHHH
T ss_pred EEEEEcCCCCCccHHHHHHHHHh--h--cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHHH
Confidence 4789999999999996 477776 2 234 34667777654 45566666654211111100 1111111111
Q ss_pred --HHHHHHHh--cCCeEEEEEeCCCC
Q 040110 185 --KTILRDYL--TNKKYFTVLDDVWI 206 (348)
Q Consensus 185 --~~~l~~~L--~~kr~LlVLDdv~~ 206 (348)
.-.+-+++ +++.+|+++||+-.
T Consensus 253 ~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 253 YAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 11233344 46899999999843
No 296
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.90 E-value=0.031 Score=50.01 Aligned_cols=23 Identities=13% Similarity=0.070 Sum_probs=20.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||.+.++.-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 37899999999999999998754
No 297
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.89 E-value=0.031 Score=50.63 Aligned_cols=24 Identities=8% Similarity=0.196 Sum_probs=21.0
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
-.+++|+|+.|+|||||++.+..-
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhh
Confidence 347999999999999999998755
No 298
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.85 E-value=0.053 Score=44.58 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=22.1
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.....|+|+|.+|+|||||...+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567889999999999999998866
No 299
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=93.84 E-value=0.066 Score=51.64 Aligned_cols=87 Identities=13% Similarity=0.109 Sum_probs=48.2
Q ss_pred EEEEECCCCCcHHHHH-HHHhcCccccCCcc-eeEEEEeCCCC-CHHHHHHHHHHHhCCCCCcc--ccCC------C---
Q 040110 114 VVAILDSRGFDKTAFA-AEIYNNNFVKFYFD-CHAWVRVSNFY-NFKRILDDIMKSLMPTSSWL--KIMG------K--- 179 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA-~~v~~~~~~~~~F~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~--~~~~------~--- 179 (348)
.++|.|.+|+|||+|| ..+.+.. . -+ .++++-+++.. .+.++.+++...=....... ...+ .
T Consensus 165 R~~Ifg~~g~GKT~Lal~~I~~~~--~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~ 240 (507)
T 1fx0_A 165 RELIIGDRQTGKTAVATDTILNQQ--G--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAP 240 (507)
T ss_dssp BCBEEESSSSSHHHHHHHHHHTCC--T--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHH
T ss_pred EEEEecCCCCCccHHHHHHHHHhh--c--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHH
Confidence 3678999999999996 5777762 2 34 35667777654 34455555543211110000 0000 1
Q ss_pred -CHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 040110 180 -DYKSEKTILRDYLTNKKYFTVLDDVWI 206 (348)
Q Consensus 180 -~~~~~~~~l~~~L~~kr~LlVLDdv~~ 206 (348)
..-...++++. +++.+||++||+-.
T Consensus 241 ~~a~tiAEyfrd--~G~dVLli~Dsltr 266 (507)
T 1fx0_A 241 YTGAALAEYFMY--RERHTLIIYDDLSK 266 (507)
T ss_dssp HHHHHHHHHHHH--TTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHH--cCCcEEEEEecHHH
Confidence 11122333433 57999999999854
No 300
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.84 E-value=0.042 Score=43.98 Aligned_cols=24 Identities=4% Similarity=0.138 Sum_probs=20.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.--|.++|.+|+|||||...+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999999865
No 301
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.74 E-value=0.094 Score=53.78 Aligned_cols=97 Identities=16% Similarity=0.218 Sum_probs=55.4
Q ss_pred cccccccccccHHHHHhhcCCCC-------CCCCCCcEEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSS-------GLGQPTHSVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYN 155 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~-------~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~ 155 (348)
.+.|.+... +.|.+.+.-+- ..+-...+-+.++|++|+|||.||+++++. ....| +.++
T Consensus 478 diggl~~~k---~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~~~f-----~~v~---- 543 (806)
T 3cf2_A 478 DIGGLEDVK---RELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQANF-----ISIK---- 543 (806)
T ss_dssp TCCSCHHHH---HHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT--TTCEE-----EECC----
T ss_pred HhCCHHHHH---HHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH--hCCce-----EEec----
Confidence 566777777 66666654210 112233444678999999999999999988 33322 2222
Q ss_pred HHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 040110 156 FKRILDDIMKSLMPTSSWLKIMGKDYKSEKTILRDYLTNKKYFTVLDDVWI 206 (348)
Q Consensus 156 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~ 206 (348)
..+ ++... -..+...+...+...-+..+++|.+|+++.
T Consensus 544 ~~~----l~s~~---------vGese~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 544 GPE----LLTMW---------FGESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp HHH----HHTTT---------CSSCHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred cch----hhccc---------cchHHHHHHHHHHHHHHcCCceeechhhhH
Confidence 111 11111 112333333333334355789999999863
No 302
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.68 E-value=0.091 Score=44.92 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=21.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
-..|.|.|+.|+||||+++.+.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 357889999999999999999876
No 303
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.66 E-value=0.031 Score=49.72 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=20.8
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
-.++.|+|.+|+|||||+..++..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 348899999999999999998754
No 304
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.66 E-value=0.06 Score=47.71 Aligned_cols=35 Identities=11% Similarity=0.040 Sum_probs=26.0
Q ss_pred HHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 97 LHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 97 l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
+..+|. ...+....+.++|++|+|||.+|.++++.
T Consensus 93 l~~~l~----~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 93 FLGWAT----KKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHT----TCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHh----CCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 555555 22133456889999999999999999875
No 305
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.66 E-value=0.041 Score=54.76 Aligned_cols=42 Identities=10% Similarity=0.191 Sum_probs=34.7
Q ss_pred cccccccccccHHHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|.+..+ +.+...+. .+ ..+.|+|++|+||||||+.++..
T Consensus 42 ~i~G~~~~l---~~l~~~i~----~g----~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 42 QVIGQEHAV---EVIKTAAN----QK----RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HCCSCHHHH---HHHHHHHH----TT----CCEEEECCTTSSHHHHHHHHHHT
T ss_pred eEECchhhH---hhcccccc----CC----CEEEEEeCCCCCHHHHHHHHhcc
Confidence 689988888 77777776 11 36889999999999999999887
No 306
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.64 E-value=0.036 Score=44.10 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 040110 114 VVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
-|.++|.+|+|||||...+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999997663
No 307
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.64 E-value=0.042 Score=45.16 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=21.6
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
...-|+|+|.+|+|||||...+.+..
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCC
Confidence 34567899999999999999998763
No 308
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.63 E-value=0.12 Score=43.45 Aligned_cols=50 Identities=8% Similarity=-0.077 Sum_probs=31.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCCHHHHHHHHHH
Q 040110 114 VVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYNFKRILDDIMK 165 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 165 (348)
.|+|=|.-|+||||.++.+++. .+..--.++...-.......+.++.++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~--L~~~g~~v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY--LEKRGKKVILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCCCCcHHHHHHHHhh
Confidence 4678899999999999999887 3332223344433333444455555553
No 309
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.62 E-value=0.036 Score=52.91 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=32.2
Q ss_pred cccccccccccHHHHHhhcCC-------CCC-CCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPP-------SSG-LGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~-------~~~-~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|.+..+ +.+...+.. ... ......+-+.++|++|+||||+|+.++..
T Consensus 16 ~IvGqe~ak---~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 16 HIIGQADAK---RAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TCCSCHHHH---HHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HhCCHHHHH---HHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 567777766 666544410 000 01112344778999999999999999877
No 310
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.61 E-value=0.038 Score=52.65 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.8
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...+|+|+|.+|+||||++..++..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999988765
No 311
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.58 E-value=0.042 Score=49.03 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=20.9
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|+|.|-||+||||+|..++..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~ 25 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAA 25 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHH
Confidence 468888999999999999888765
No 312
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.58 E-value=0.035 Score=49.39 Aligned_cols=22 Identities=9% Similarity=0.463 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 040110 114 VVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|+|+.|+|||||.+.++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998754
No 313
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.54 E-value=0.041 Score=51.42 Aligned_cols=25 Identities=16% Similarity=0.053 Sum_probs=22.0
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...+++|+|++|+|||||++.+...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4458999999999999999999864
No 314
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.53 E-value=0.055 Score=44.51 Aligned_cols=27 Identities=19% Similarity=0.413 Sum_probs=22.5
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
.....|+|+|.+|+|||||...+.+..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 344568899999999999999998763
No 315
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.52 E-value=0.057 Score=43.57 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=20.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..-|+|+|.+|+|||||...+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 345789999999999999998765
No 316
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.52 E-value=0.058 Score=48.74 Aligned_cols=31 Identities=13% Similarity=0.221 Sum_probs=26.1
Q ss_pred HHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 95 RNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 95 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
++|.+.+. -.+++++|+.|+|||||.+.+. .
T Consensus 157 ~~L~~~l~---------G~i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 157 DELVDYLE---------GFICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp HHHHHHTT---------TCEEEEECSTTSSHHHHHHHHH-S
T ss_pred HHHHhhcc---------CcEEEEECCCCCCHHHHHHHHH-H
Confidence 77777766 1378999999999999999998 6
No 317
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.51 E-value=0.047 Score=45.23 Aligned_cols=28 Identities=14% Similarity=0.090 Sum_probs=22.7
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 109 QPTHSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 109 ~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
......|.|+|.+|+|||||...+.+..
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4556678899999999999999988764
No 318
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.48 E-value=0.06 Score=43.19 Aligned_cols=25 Identities=20% Similarity=0.209 Sum_probs=21.0
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
.--|+++|.+|+|||||...+.+..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3457899999999999999988653
No 319
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.43 E-value=0.047 Score=47.36 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=21.6
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...|.|.|..|+||||+++.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 357899999999999999999876
No 320
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.42 E-value=0.058 Score=43.97 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=21.2
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
....|+|+|.+|+|||||...+...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4556889999999999999998754
No 321
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.42 E-value=0.033 Score=49.12 Aligned_cols=26 Identities=12% Similarity=0.082 Sum_probs=22.5
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.....|.|.|..|+||||+|+.+...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999998876
No 322
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.42 E-value=0.044 Score=45.15 Aligned_cols=24 Identities=17% Similarity=0.398 Sum_probs=20.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCc
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
..|+++|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 357889999999999999998663
No 323
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.41 E-value=0.045 Score=48.13 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.1
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
++|+|.|-||+||||+|..++..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~ 24 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSG 24 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHHH
Confidence 57888899999999999888765
No 324
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.39 E-value=0.041 Score=52.67 Aligned_cols=104 Identities=12% Similarity=0.083 Sum_probs=57.2
Q ss_pred HHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcCccccCCc--ceeEEEEeCCCC-CHHHHHHHHHHHhCCCCC
Q 040110 96 NLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNNNFVKFYF--DCHAWVRVSNFY-NFKRILDDIMKSLMPTSS 172 (348)
Q Consensus 96 ~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F--~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~ 172 (348)
+.++.|.+- ..+- .++|.|.+|+|||+|+.++++.....+.- +.++++-+++.. .+.+++.++...=.....
T Consensus 141 r~ID~l~pi----grGQ-r~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rt 215 (469)
T 2c61_A 141 STIDGTNTL----VRGQ-KLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERA 215 (469)
T ss_dssp HHHHTTSCC----BTTC-BCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGE
T ss_pred Eeeeeeecc----ccCC-EEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccce
Confidence 456666532 1122 36778999999999999998874332211 256666666553 456677776653111111
Q ss_pred c--cccCCCCHHH------HHHHHHHHhc---CCeEEEEEeCC
Q 040110 173 W--LKIMGKDYKS------EKTILRDYLT---NKKYFTVLDDV 204 (348)
Q Consensus 173 ~--~~~~~~~~~~------~~~~l~~~L~---~kr~LlVLDdv 204 (348)
. ....+..... ..-.+.++++ ++.+||++||+
T Consensus 216 vvV~~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 216 VVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 0 0111222211 1122344443 68999999997
No 325
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.38 E-value=0.051 Score=44.91 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=22.2
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.....|+|+|.+|+|||||...+.+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567889999999999999999866
No 326
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.35 E-value=0.062 Score=43.53 Aligned_cols=27 Identities=11% Similarity=0.277 Sum_probs=22.4
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
....-|+|+|.+|+|||||...+.+..
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCc
Confidence 345568899999999999999988763
No 327
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.35 E-value=0.047 Score=43.53 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=20.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCc
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
.-|+++|.+|+|||||...+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 457899999999999999998663
No 328
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.34 E-value=0.033 Score=50.55 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=21.0
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
-.+++|+|+.|+|||||++.+..-
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 347999999999999999998764
No 329
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.29 E-value=0.055 Score=45.72 Aligned_cols=27 Identities=11% Similarity=0.172 Sum_probs=22.5
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
.....|.++|.+|+|||||...+.+..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344568899999999999999998763
No 330
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.27 E-value=0.073 Score=42.72 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=20.8
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...|+++|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999999765
No 331
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=93.27 E-value=0.21 Score=48.11 Aligned_cols=87 Identities=15% Similarity=0.147 Sum_probs=49.7
Q ss_pred EEEEECCCCCcHHHHH-HHHhcCccccCCcc-eeEEEEeCCCC-CHHHHHHHHHHHhCCCCCcc--ccCCCCHH------
Q 040110 114 VVAILDSRGFDKTAFA-AEIYNNNFVKFYFD-CHAWVRVSNFY-NFKRILDDIMKSLMPTSSWL--KIMGKDYK------ 182 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA-~~v~~~~~~~~~F~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~--~~~~~~~~------ 182 (348)
.++|.|..|+|||+|| ..+.|. . +-+ .++++-+++.. .+.++..++...=....... ...+....
T Consensus 164 R~~Ifg~~g~GKT~l~l~~I~n~--~--~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a~ 239 (513)
T 3oaa_A 164 RELIIGDRQTGKTALAIDAIINQ--R--DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAP 239 (513)
T ss_dssp BCEEEESSSSSHHHHHHHHHHTT--S--SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHHH
T ss_pred EEEeecCCCCCcchHHHHHHHhh--c--cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHHH
Confidence 3678999999999996 466665 1 223 35677777664 45566666554321211110 11111111
Q ss_pred ----HHHHHHHHHhcCCeEEEEEeCCCC
Q 040110 183 ----SEKTILRDYLTNKKYFTVLDDVWI 206 (348)
Q Consensus 183 ----~~~~~l~~~L~~kr~LlVLDdv~~ 206 (348)
...++++. +++.+||++||+-.
T Consensus 240 ~~a~tiAEyfrd--~G~dVLli~Dsltr 265 (513)
T 3oaa_A 240 YAGCAMGEYFRD--RGEDALIIYDDLSK 265 (513)
T ss_dssp HHHHHHHHHHHH--TTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHh--cCCCEEEEecChHH
Confidence 12233332 57899999999853
No 332
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.20 E-value=0.054 Score=43.45 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 040110 114 VVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
-|+++|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4779999999999999999865
No 333
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.17 E-value=0.045 Score=49.84 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=22.5
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...+++|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4679999999999999999999865
No 334
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.16 E-value=0.096 Score=45.15 Aligned_cols=56 Identities=9% Similarity=0.004 Sum_probs=33.7
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCCHHHHHHHHHH
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYNFKRILDDIMK 165 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 165 (348)
.....|.|.|+.|+||||+++.+.+.......+++.....-.......+.+++++.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHh
Confidence 34568889999999999999999887322123443332222223233444555554
No 335
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.16 E-value=0.054 Score=43.14 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 040110 114 VVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
-|+++|.+|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999987653
No 336
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.14 E-value=0.045 Score=50.74 Aligned_cols=124 Identities=10% Similarity=0.078 Sum_probs=65.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCccccC---Cc----------------ceeEEEEeCC----CCCH-------------
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNNNFVKF---YF----------------DCHAWVRVSN----FYNF------------- 156 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~~~~~~---~F----------------~~~~wv~~~~----~~~~------------- 156 (348)
.+++|+|+.|+|||||.+.++.-..... .| ..+.+|.-.. ..++
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~ 110 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKG 110 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCC
Confidence 4789999999999999999976421100 00 1122221110 0111
Q ss_pred -----HHHHHHHHHHhCCCCCcc-ccCCCCHHHHH-HHHHHHhcCCeEEEEEeCCCCh------hh-HHHHHhhCCCCCC
Q 040110 157 -----KRILDDIMKSLMPTSSWL-KIMGKDYKSEK-TILRDYLTNKKYFTVLDDVWIE------KI-WDDLREALPDNQI 222 (348)
Q Consensus 157 -----~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~-~~l~~~L~~kr~LlVLDdv~~~------~~-~~~l~~~l~~~~~ 222 (348)
.+-..++++.++...... .....+-.+.+ -.|.+.|-.++-+|+||.--+. .. ++.+..... ..
T Consensus 111 ~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~--~~ 188 (359)
T 3fvq_A 111 RTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALR--AN 188 (359)
T ss_dssp CSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH--HT
T ss_pred ChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--hC
Confidence 123445666666532110 12223333333 3466677788889999997653 11 222322221 23
Q ss_pred CcEEEEEeCChhhhhh
Q 040110 223 GSRALITVGPHNILTS 238 (348)
Q Consensus 223 gskIlvTTR~~~v~~~ 238 (348)
|..||++|-+...+..
T Consensus 189 g~tvi~vTHd~~ea~~ 204 (359)
T 3fvq_A 189 GKSAVFVSHDREEALQ 204 (359)
T ss_dssp TCEEEEECCCHHHHHH
T ss_pred CCEEEEEeCCHHHHHH
Confidence 6678888888766554
No 337
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.12 E-value=0.053 Score=43.36 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 040110 114 VVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
-|.++|.+|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47789999999999999988663
No 338
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=93.12 E-value=0.037 Score=52.75 Aligned_cols=105 Identities=11% Similarity=0.128 Sum_probs=56.4
Q ss_pred HHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcCcccc--------CCcc-eeEEEEeCCCC-CHHHHHHHHHH
Q 040110 96 NLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNNNFVK--------FYFD-CHAWVRVSNFY-NFKRILDDIMK 165 (348)
Q Consensus 96 ~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~--------~~F~-~~~wv~~~~~~-~~~~~~~~i~~ 165 (348)
+.++.|.+- ..+- .++|.|.+|+|||+|+.++.+..... ++=+ .++++-+++.. .+.++..++..
T Consensus 136 raID~l~pi----grGQ-r~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~ 210 (464)
T 3gqb_B 136 STIDVMNTL----VRGQ-KLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFER 210 (464)
T ss_dssp HHHHTTSCC----BTTC-BCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred eeeeccccc----ccCC-EEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhh
Confidence 555666632 1222 36788999999999999998874431 1112 45666666543 45566666544
Q ss_pred HhCCCCCc--cccCCCC-HHHH-----HHHHHHHhc---CCeEEEEEeCCC
Q 040110 166 SLMPTSSW--LKIMGKD-YKSE-----KTILRDYLT---NKKYFTVLDDVW 205 (348)
Q Consensus 166 ~l~~~~~~--~~~~~~~-~~~~-----~~~l~~~L~---~kr~LlVLDdv~ 205 (348)
.=...... ....+.. .... .-.+.++++ ++.+||++||+-
T Consensus 211 ~g~~~rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 211 TGALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp TSGGGGEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred cccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 21011000 0111111 1111 123444543 689999999984
No 339
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.12 E-value=0.053 Score=43.30 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 040110 114 VVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
-|+++|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999865
No 340
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.10 E-value=0.055 Score=43.34 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=20.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCc
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
--|+++|.+|+|||||...+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 357899999999999999998763
No 341
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.09 E-value=0.077 Score=43.75 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=20.7
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..--|+|+|.+|+|||||...+.+.
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3446789999999999999887765
No 342
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.09 E-value=0.066 Score=43.39 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=21.8
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
...-|+|+|.+|+|||||...+.+..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 44568899999999999999987653
No 343
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.08 E-value=0.071 Score=44.38 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=22.1
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
....-|+|+|.+|+|||||...+....
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCC
Confidence 344568899999999999999987653
No 344
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.05 E-value=0.051 Score=44.32 Aligned_cols=23 Identities=13% Similarity=0.118 Sum_probs=20.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999865
No 345
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.03 E-value=0.054 Score=50.32 Aligned_cols=125 Identities=6% Similarity=-0.006 Sum_probs=66.4
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCccccC---Cc-----------------ceeEEEEeCC----CCCHHH----------
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNNNFVKF---YF-----------------DCHAWVRVSN----FYNFKR---------- 158 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~~~~~~---~F-----------------~~~~wv~~~~----~~~~~~---------- 158 (348)
.+++|+|+.|+|||||.+.+..-..... .| ..+.+|.-.. ..++.+
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~ 134 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN 134 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSC
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcC
Confidence 4899999999999999999875421110 00 0122332111 112221
Q ss_pred --------HHHHHHHHhCCCCCcc-ccCCCCHHHH-HHHHHHHhcCCeEEEEEeCCCCh------hhHHHHHhhCCCCCC
Q 040110 159 --------ILDDIMKSLMPTSSWL-KIMGKDYKSE-KTILRDYLTNKKYFTVLDDVWIE------KIWDDLREALPDNQI 222 (348)
Q Consensus 159 --------~~~~i~~~l~~~~~~~-~~~~~~~~~~-~~~l~~~L~~kr~LlVLDdv~~~------~~~~~l~~~l~~~~~ 222 (348)
-..++++.++...... ....-+-.+. .-.|.+.|..++-+|+||..-+. ...-.+...+. ...
T Consensus 135 ~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~-~~~ 213 (366)
T 3tui_C 135 TPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDIN-RRL 213 (366)
T ss_dssp CCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH-HHS
T ss_pred CCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHH-HhC
Confidence 2344555555532110 1222333333 33466777888889999997653 12222222221 123
Q ss_pred CcEEEEEeCChhhhhh
Q 040110 223 GSRALITVGPHNILTS 238 (348)
Q Consensus 223 gskIlvTTR~~~v~~~ 238 (348)
|..||++|-+-..+..
T Consensus 214 g~Tii~vTHdl~~~~~ 229 (366)
T 3tui_C 214 GLTILLITHEMDVVKR 229 (366)
T ss_dssp CCEEEEEESCHHHHHH
T ss_pred CCEEEEEecCHHHHHH
Confidence 6678888888776654
No 346
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.02 E-value=0.046 Score=43.76 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 040110 114 VVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
-|+++|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4779999999999999998754
No 347
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.01 E-value=0.054 Score=50.19 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=20.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||.+.++.-
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 47999999999999999998754
No 348
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.00 E-value=0.071 Score=42.74 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 040110 114 VVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
-|+|+|.+|+|||||...+...
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999998643
No 349
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.98 E-value=0.077 Score=45.82 Aligned_cols=107 Identities=16% Similarity=0.145 Sum_probs=54.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCc------cccCCCCHHHHHHH
Q 040110 114 VVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYNFKRILDDIMKSLMPTSSW------LKIMGKDYKSEKTI 187 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~~~~ 187 (348)
.|.+.|.||+||||+|..+...... ..++. ..+.+...-+.... .++..+...... ......+....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~-~G~~V-~v~d~D~q~~~~~~--al~~gl~~~~~~~~~~~~~~~~e~~l~~~--- 80 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLR-QGVRV-MAGVVETHGRAETE--ALLNGLPQQPLLRTEYRGMTLEEMDLDAL--- 80 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH-TTCCE-EEEECCCTTCHHHH--HHHTTSCBCCCEEEEETTEEEEECCHHHH---
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH-CCCCE-EEEEeCCCCChhHH--HHhcCccccCcceeecCCcccccccHHHH---
Confidence 4667899999999999888876322 23443 33444333232211 112222211000 00112333332
Q ss_pred HHHHhcCCeEEEEEeCCCCh--------hhHHHHHhhCCCCCCCcEEEEEeCChh
Q 040110 188 LRDYLTNKKYFTVLDDVWIE--------KIWDDLREALPDNQIGSRALITVGPHN 234 (348)
Q Consensus 188 l~~~L~~kr~LlVLDdv~~~--------~~~~~l~~~l~~~~~gskIlvTTR~~~ 234 (348)
+..+.=++|+|++-.. .-|.++...++ .|..|++|+.-.+
T Consensus 81 ----L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~---sgidVitT~Nlqh 128 (228)
T 2r8r_A 81 ----LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA---AGIDVYTTVNVQH 128 (228)
T ss_dssp ----HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH---TTCEEEEEEEGGG
T ss_pred ----HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc---CCCCEEEEccccc
Confidence 2235668999976431 35666655433 2556887776443
No 350
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.97 E-value=0.048 Score=49.05 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=21.0
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||.+.+..-
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 48999999999999999999866
No 351
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.96 E-value=0.054 Score=50.25 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...++|+|..|+|||||++.+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999998765
No 352
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.94 E-value=0.056 Score=50.51 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=20.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||.+.+..-
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHcC
Confidence 47899999999999999999764
No 353
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.93 E-value=0.06 Score=43.61 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=22.2
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
+...-|+|+|.+|+|||||...+.+..
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCC
Confidence 344567899999999999999987653
No 354
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.87 E-value=0.11 Score=42.38 Aligned_cols=26 Identities=12% Similarity=0.319 Sum_probs=21.7
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
...-|.|+|.+|+|||||...+.+..
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34567899999999999999988663
No 355
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.86 E-value=0.074 Score=43.81 Aligned_cols=25 Identities=8% Similarity=0.134 Sum_probs=21.3
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...-|+|+|.+|+|||||...+...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3456889999999999999998765
No 356
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.86 E-value=0.058 Score=50.05 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||.+.++.-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHCC
Confidence 47899999999999999999754
No 357
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.85 E-value=0.061 Score=50.57 Aligned_cols=23 Identities=17% Similarity=0.411 Sum_probs=20.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+|.|.|+.|+||||||..++..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 57899999999999999998754
No 358
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.84 E-value=0.094 Score=42.39 Aligned_cols=24 Identities=13% Similarity=0.176 Sum_probs=20.5
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.--|+|+|.+|+|||||...+.+.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 345789999999999999998765
No 359
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=92.84 E-value=0.064 Score=48.55 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=24.1
Q ss_pred CCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 108 GQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 108 ~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..+....|+|+|.+|+|||||..++...
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3566789999999999999999998865
No 360
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.83 E-value=0.066 Score=44.95 Aligned_cols=26 Identities=12% Similarity=0.115 Sum_probs=20.9
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
..--|+++|.+|+|||||...+.+..
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 34457899999999999999887653
No 361
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.82 E-value=0.06 Score=50.01 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||.+.++.-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 47899999999999999999764
No 362
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.82 E-value=0.06 Score=44.26 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 040110 114 VVAILDSRGFDKTAFAAEIYN 134 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~ 134 (348)
+.+|+|..|+|||||+.+++-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 788999999999999999864
No 363
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.78 E-value=0.077 Score=43.49 Aligned_cols=26 Identities=15% Similarity=0.086 Sum_probs=21.7
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
+...-|+|+|.+|+|||||...+.+.
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcC
Confidence 33456789999999999999999865
No 364
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.77 E-value=0.067 Score=43.26 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=21.2
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...-|+|+|.+|+|||||...+.+.
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3446789999999999999999765
No 365
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.75 E-value=0.065 Score=42.84 Aligned_cols=23 Identities=9% Similarity=0.193 Sum_probs=20.0
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.-|+++|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998865
No 366
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.75 E-value=0.062 Score=50.10 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=20.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||.+.++.-
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHHcC
Confidence 48899999999999999998754
No 367
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.74 E-value=0.061 Score=50.17 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||.+.++.-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCcHHHHHHHHHHcC
Confidence 47899999999999999999764
No 368
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.73 E-value=0.076 Score=42.91 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=22.0
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
...-|.|+|.+|+|||||...+.+..
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 34568899999999999999998664
No 369
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.72 E-value=0.082 Score=43.19 Aligned_cols=23 Identities=17% Similarity=0.453 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 040110 114 VVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
-|+|+|.+|+|||||...+.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57799999999999999998664
No 370
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.68 E-value=0.064 Score=42.78 Aligned_cols=21 Identities=10% Similarity=0.088 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 040110 115 VAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 115 i~I~G~gGvGKTtLA~~v~~~ 135 (348)
|+++|.+|+|||||...+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 679999999999999998754
No 371
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.66 E-value=0.088 Score=45.02 Aligned_cols=26 Identities=12% Similarity=0.286 Sum_probs=22.4
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.....|+|+|.+|+|||||...+...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44567889999999999999999866
No 372
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.65 E-value=0.063 Score=46.52 Aligned_cols=25 Identities=24% Similarity=0.225 Sum_probs=20.8
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
....++|.|++|+||||+|+.+...
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHHH
Confidence 3446899999999999999999876
No 373
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.65 E-value=0.074 Score=47.99 Aligned_cols=32 Identities=16% Similarity=0.261 Sum_probs=26.5
Q ss_pred HHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 95 RNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 95 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
+++.+.+. -.+++|+|++|+|||||.+.+...
T Consensus 161 ~~lf~~l~---------geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 161 EELKEYLK---------GKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp HHHHHHHS---------SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred HHHHHHhc---------CCeEEEECCCCCcHHHHHHHhccc
Confidence 66777666 137899999999999999999876
No 374
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.62 E-value=0.056 Score=45.89 Aligned_cols=23 Identities=13% Similarity=0.146 Sum_probs=20.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+|+|.|+.|+||||+++.+...
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999998765
No 375
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.62 E-value=0.078 Score=48.95 Aligned_cols=25 Identities=16% Similarity=0.084 Sum_probs=22.1
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...+++|+|.+|+|||||...+...
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999998753
No 376
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.59 E-value=0.046 Score=45.90 Aligned_cols=25 Identities=20% Similarity=0.112 Sum_probs=21.4
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.-..++|+|..|+|||||.+.+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999988765
No 377
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.59 E-value=0.084 Score=45.60 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=22.4
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
.....|+|+|.+|+|||||...+....
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCC
Confidence 345678899999999999999998764
No 378
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.59 E-value=0.084 Score=43.55 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=21.6
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
...-|+|+|.+|+|||||...+.+..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 34567899999999999999988653
No 379
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.57 E-value=0.068 Score=43.97 Aligned_cols=24 Identities=17% Similarity=0.036 Sum_probs=19.9
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..-|.|+|.+|+|||||.+.+.+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh
Confidence 345789999999999999877654
No 380
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=92.56 E-value=0.2 Score=48.28 Aligned_cols=93 Identities=13% Similarity=0.133 Sum_probs=51.1
Q ss_pred EEEEECCCCCcHHHHH-HHHhcCccc----cCCcc-eeEEEEeCCCC-CHHHHHHHHHHHhCCCCCcc--ccCCCCHHHH
Q 040110 114 VVAILDSRGFDKTAFA-AEIYNNNFV----KFYFD-CHAWVRVSNFY-NFKRILDDIMKSLMPTSSWL--KIMGKDYKSE 184 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA-~~v~~~~~~----~~~F~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~ 184 (348)
.++|.|.+|+|||+|| ..+.|.... .++-+ .++++-+++.. .+.++.+++...=....... ...+......
T Consensus 164 R~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r 243 (510)
T 2ck3_A 164 RELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQ 243 (510)
T ss_dssp BCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHHH
T ss_pred EEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHHH
Confidence 3678999999999995 566666321 12234 46677777664 45566666654211111110 1111111111
Q ss_pred ------HHHHHHHh--cCCeEEEEEeCCCC
Q 040110 185 ------KTILRDYL--TNKKYFTVLDDVWI 206 (348)
Q Consensus 185 ------~~~l~~~L--~~kr~LlVLDdv~~ 206 (348)
.-.+-+++ .++.+||++||+-.
T Consensus 244 ~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 244 YLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 11233334 46899999999853
No 381
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=92.56 E-value=0.12 Score=53.87 Aligned_cols=21 Identities=10% Similarity=0.036 Sum_probs=19.4
Q ss_pred cEEEEEECCCCCcHHHHHHHH
Q 040110 112 HSVVAILDSRGFDKTAFAAEI 132 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v 132 (348)
-.+++|+|+.|.||||+.+.+
T Consensus 662 g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999988
No 382
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.55 E-value=0.085 Score=42.93 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=21.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
..-|.|+|.+|+|||||...+.+..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 4567899999999999999998653
No 383
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.55 E-value=0.078 Score=51.78 Aligned_cols=25 Identities=12% Similarity=0.182 Sum_probs=21.9
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...+|.++|++|+||||+|+.+...
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~ 58 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRY 58 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999999999765
No 384
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=92.55 E-value=0.12 Score=46.09 Aligned_cols=42 Identities=7% Similarity=0.149 Sum_probs=28.2
Q ss_pred HHHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 95 RNLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 95 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
+++.+.|.............|+|+|.+|+|||||...+....
T Consensus 9 ~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 9 NRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp HHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred HHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 444444442211223345578999999999999999998764
No 385
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.54 E-value=0.11 Score=42.94 Aligned_cols=25 Identities=12% Similarity=0.197 Sum_probs=21.0
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
..-|.|+|.+|+|||||...+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4457899999999999999988653
No 386
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.54 E-value=0.053 Score=50.09 Aligned_cols=125 Identities=16% Similarity=0.075 Sum_probs=64.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCccccC---Ccc------------eeEEEEeC----CCCCHHH---------------
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNNNFVKF---YFD------------CHAWVRVS----NFYNFKR--------------- 158 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~~~~~~---~F~------------~~~wv~~~----~~~~~~~--------------- 158 (348)
.+++|+|+.|+|||||.+.++.-..... .|+ .+.++.-. ...++.+
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~ 106 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK 106 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHH
T ss_pred CEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHH
Confidence 4799999999999999999976522110 010 12222111 1112221
Q ss_pred HHHHHHHHhCCCCCcc-ccCCCCHHHHH-HHHHHHhcCCeEEEEEeCCCCh------hhHHHHHhhCCCCCCCcEEEEEe
Q 040110 159 ILDDIMKSLMPTSSWL-KIMGKDYKSEK-TILRDYLTNKKYFTVLDDVWIE------KIWDDLREALPDNQIGSRALITV 230 (348)
Q Consensus 159 ~~~~i~~~l~~~~~~~-~~~~~~~~~~~-~~l~~~L~~kr~LlVLDdv~~~------~~~~~l~~~l~~~~~gskIlvTT 230 (348)
-..++++.++...... .....+-.+.+ -.|.+.|-.++-+|+||.--+. ..+..+...+.. ..|..||++|
T Consensus 107 ~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~-~~g~tii~vT 185 (348)
T 3d31_A 107 RVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHK-KNKLTVLHIT 185 (348)
T ss_dssp HHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHH-HTTCEEEEEE
T ss_pred HHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHH-hcCCEEEEEe
Confidence 2345566665532110 12223333333 3466777788889999997653 112222222211 1255688888
Q ss_pred CChhhhhh
Q 040110 231 GPHNILTS 238 (348)
Q Consensus 231 R~~~v~~~ 238 (348)
.+...+..
T Consensus 186 Hd~~~~~~ 193 (348)
T 3d31_A 186 HDQTEARI 193 (348)
T ss_dssp SCHHHHHH
T ss_pred CCHHHHHH
Confidence 88665543
No 387
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.53 E-value=0.06 Score=44.13 Aligned_cols=23 Identities=4% Similarity=0.147 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q 040110 114 VVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
-|+|+|.+|+|||||...+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47799999999999999988763
No 388
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.52 E-value=0.056 Score=43.90 Aligned_cols=23 Identities=9% Similarity=0.148 Sum_probs=20.1
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
--|+++|.+|+|||||...+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45779999999999999998865
No 389
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.48 E-value=0.071 Score=44.35 Aligned_cols=24 Identities=8% Similarity=0.279 Sum_probs=20.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..-|.++|.+|+|||||...+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 345779999999999999987765
No 390
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.47 E-value=0.08 Score=42.34 Aligned_cols=23 Identities=9% Similarity=0.307 Sum_probs=20.1
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.-|+|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35789999999999999998765
No 391
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.45 E-value=0.089 Score=48.32 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=21.4
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhc
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYN 134 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~ 134 (348)
...+++|+|.+|+|||||.+.+..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999874
No 392
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.44 E-value=0.074 Score=43.33 Aligned_cols=23 Identities=13% Similarity=0.146 Sum_probs=19.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
--|+++|.+|+|||||...+.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998765
No 393
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.42 E-value=0.092 Score=43.33 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=20.9
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
.--|.|+|.+|+|||||...+.+..
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCC
Confidence 3457899999999999999987653
No 394
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.40 E-value=0.077 Score=43.08 Aligned_cols=25 Identities=12% Similarity=0.308 Sum_probs=21.0
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
..-|.++|.+|+|||||...+....
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3457899999999999999987653
No 395
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.38 E-value=0.095 Score=43.47 Aligned_cols=25 Identities=8% Similarity=0.046 Sum_probs=21.0
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...-|+|+|.+|+|||||...+...
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CccEEEEECCCCCCHHHHHHHHHhC
Confidence 3446889999999999999998754
No 396
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.36 E-value=0.069 Score=44.29 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=20.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..|+++|.+|+|||||...+.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36789999999999999999865
No 397
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=92.36 E-value=0.075 Score=44.42 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=20.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...|+++|.+|+|||||...+.+.
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999998764
No 398
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.34 E-value=0.097 Score=45.26 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=18.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
-..|.|-|+.|+||||+++.+.+.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347889999999999999999877
No 399
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.33 E-value=0.1 Score=42.90 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=21.3
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
....|+|+|.+|+|||||...+.+.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999999854
No 400
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.33 E-value=0.13 Score=42.40 Aligned_cols=26 Identities=8% Similarity=0.181 Sum_probs=21.9
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
...-|.|+|..|+|||||...+.+..
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34567899999999999999998764
No 401
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.32 E-value=0.077 Score=44.25 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=20.3
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhc
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYN 134 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~ 134 (348)
....|+|+|.+|+|||||...+.+
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 445688999999999999999853
No 402
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.32 E-value=0.079 Score=43.06 Aligned_cols=23 Identities=13% Similarity=0.098 Sum_probs=20.1
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.-|+|+|.+|+|||||...+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35779999999999999998866
No 403
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.32 E-value=0.095 Score=43.67 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=21.9
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
....|+|+|.+|+|||||...+.+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 44568899999999999999987653
No 404
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.32 E-value=0.086 Score=42.88 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=21.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
...|+|+|.+|+|||||...+.+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4567899999999999999998553
No 405
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.29 E-value=0.13 Score=43.91 Aligned_cols=52 Identities=12% Similarity=0.035 Sum_probs=32.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCCHHHHHHHHHH
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYNFKRILDDIMK 165 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 165 (348)
..|.+-|+.|+||||+++.+...... ..+..+.+..-.....+.+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQ-LGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-cCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 37889999999999999999877322 23333344333333334555566554
No 406
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.28 E-value=0.08 Score=43.92 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=21.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
..-|+|+|.+|+|||||...+.+..
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3457899999999999999988663
No 407
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.28 E-value=0.093 Score=42.84 Aligned_cols=26 Identities=8% Similarity=0.140 Sum_probs=21.7
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
...-|.|+|.+|+|||||...+.+..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 34567899999999999999988653
No 408
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=92.28 E-value=0.046 Score=54.36 Aligned_cols=51 Identities=14% Similarity=0.034 Sum_probs=34.0
Q ss_pred CcccccccccccHHHHHhhcCCCCCC--CC---CCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 82 DALLGLQSKIINLRNLHQRLPPSSGL--GQ---PTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 82 ~~~vGr~~~~~~~~~l~~~L~~~~~~--~~---~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
+.++|.+... +.+.-.|...... .+ .+..-+.++|++|+|||+||+.+++.
T Consensus 295 ~~I~G~e~vk---~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 295 PSIYGHWELK---EALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp STTSCCHHHH---HHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred chhcChHHHH---HHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence 3789999877 7776666511000 00 01113678999999999999998876
No 409
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.27 E-value=0.072 Score=43.02 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=20.0
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.-|+|+|..|+|||||...+.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45788999999999999998755
No 410
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.26 E-value=0.12 Score=42.54 Aligned_cols=25 Identities=8% Similarity=0.193 Sum_probs=21.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
.--|+|+|.+|+|||||...+....
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4457899999999999999998763
No 411
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=92.25 E-value=0.1 Score=44.20 Aligned_cols=99 Identities=13% Similarity=0.030 Sum_probs=53.1
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCCHHHHHHH-HHHHhCCCCCcc---ccCCC----C
Q 040110 109 QPTHSVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYNFKRILDD-IMKSLMPTSSWL---KIMGK----D 180 (348)
Q Consensus 109 ~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~-i~~~l~~~~~~~---~~~~~----~ 180 (348)
.....+|+|+|++|+||+|+|..+.+. .. |....-+ .+.+.+++ .+...+...... ..... .
T Consensus 8 ~~~~~II~itGk~~SGKd~va~~l~~~--~g--~~~~~vv------~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~ 77 (202)
T 3ch4_B 8 GAPRLVLLFSGKRKSGKDFVTEALQSR--LG--ADVCAVL------RLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKD 77 (202)
T ss_dssp CCCSEEEEEEECTTSSHHHHHHHHHHH--HC--TTTEEEE------CTHHHHHHHHHHTTTCCCC-------CCSSHHHH
T ss_pred cCCCEEEEEECCCCCChHHHHHHHHHH--cC--CCCceEE------EccHHHHHHHHHHcCCCchhhcchhhhHHHHHHH
Confidence 346679999999999999999988653 11 1111111 44455553 455554432110 00000 1
Q ss_pred HHHHHHHHHH---------HhcC-CeEEEEEeCCCChhhHHHHHhhC
Q 040110 181 YKSEKTILRD---------YLTN-KKYFTVLDDVWIEKIWDDLREAL 217 (348)
Q Consensus 181 ~~~~~~~l~~---------~L~~-kr~LlVLDdv~~~~~~~~l~~~l 217 (348)
+......+++ .+.. ..-.+|+|||....+.+.|...+
T Consensus 78 m~~~g~~~R~~d~~~~~~~~~~~~~~~~vII~dvR~~~Ev~~fr~~~ 124 (202)
T 3ch4_B 78 MIRWGEEKRQADPGFFCRKIVEGISQPIWLVSDTRRVSDIQWFREAY 124 (202)
T ss_dssp HHHHHHHHHHHCTTTTHHHHSBTCCCSEEEECCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCchHHHHHHHHhcCCCcEEEeCCCCHHHHHHHHHhC
Confidence 1111111111 1111 12278999999999999888765
No 412
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.21 E-value=0.05 Score=50.40 Aligned_cols=23 Identities=30% Similarity=0.291 Sum_probs=20.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||.+.++.-
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 47999999999999999998754
No 413
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.20 E-value=0.091 Score=48.99 Aligned_cols=111 Identities=14% Similarity=0.129 Sum_probs=59.9
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcCccccCCcceeE-EEEeCCCCCHHHHHHHHHHHhCCCCC-ccc-cCCCCHHHHHHH
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHA-WVRVSNFYNFKRILDDIMKSLMPTSS-WLK-IMGKDYKSEKTI 187 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~-wv~~~~~~~~~~~~~~i~~~l~~~~~-~~~-~~~~~~~~~~~~ 187 (348)
.-.+++|+|+.|+|||||++.+... +.......+ ++. .+... .+..... .+. .-..+...+...
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~--~~~~~~g~I~~~e--~~~e~---------~~~~~~~~v~Q~~~g~~~~~~~~~ 201 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIE--DPIEY---------VFKHKKSIVNQREVGEDTKSFADA 201 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH--HHHHSCCEEEEEE--SSCCS---------CCCCSSSEEEEEEBTTTBSCSHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh--cCcCCCcEEEEec--ccHhh---------hhccCceEEEeeecCCCHHHHHHH
Confidence 4468999999999999999998765 221112222 222 11110 0000000 000 000011223456
Q ss_pred HHHHhcCCeEEEEEeCCCChhhHHHHHhhCCCCCCCcEEEEEeCChhhhh
Q 040110 188 LRDYLTNKKYFTVLDDVWIEKIWDDLREALPDNQIGSRALITVGPHNILT 237 (348)
Q Consensus 188 l~~~L~~kr~LlVLDdv~~~~~~~~l~~~l~~~~~gskIlvTTR~~~v~~ 237 (348)
+...|...+-+|++|.+.+.+....+.... ..|..|+.|+-..++..
T Consensus 202 l~~~L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~~~~ 248 (372)
T 2ewv_A 202 LRAALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAID 248 (372)
T ss_dssp HHHHTTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCSHHH
T ss_pred HHHHhhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcchHHH
Confidence 777777777889999997665554433332 23556888887766443
No 414
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.17 E-value=0.091 Score=48.29 Aligned_cols=26 Identities=12% Similarity=0.087 Sum_probs=22.2
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
....+++|+|.+|+|||||+..+...
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999998654
No 415
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.17 E-value=0.13 Score=44.68 Aligned_cols=52 Identities=12% Similarity=-0.008 Sum_probs=32.0
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCCHHHHHHHHH
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYNFKRILDDIM 164 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 164 (348)
..+|.|.|+.|+||||+++.+...... ..++.+....-.......+.+++++
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~-~~~~~~~~~rep~~t~~g~~ir~~l 78 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQ-NGIDHITRTREPGGTLLAEKLRALV 78 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-cCCCeeeeecCCCCCHHHHHHHHHH
Confidence 357889999999999999999877322 3455344443333323334444444
No 416
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.16 E-value=0.1 Score=42.22 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=21.6
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
...-|+++|.+|+|||||...+.+..
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC
Confidence 34467899999999999999987654
No 417
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.09 E-value=0.24 Score=42.01 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=30.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCCHHHHHHHHH
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYNFKRILDDIM 164 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 164 (348)
..|+|-|.-|+||||+++.+.+. ....++.+ ...-.......+.+++++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~--L~~~~~v~-~~~eP~~t~~g~~ir~~l 51 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHR--LVKDYDVI-MTREPGGVPTGEEIRKIV 51 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH--HTTTSCEE-EEESSTTCHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHH--HHCCCCEE-EeeCCCCChHHHHHHHHH
Confidence 36888999999999999999887 44444432 222222333344444444
No 418
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.09 E-value=0.11 Score=42.73 Aligned_cols=25 Identities=12% Similarity=0.200 Sum_probs=21.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
..-|+|+|.+|+|||||...+.+..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4567899999999999999988663
No 419
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.08 E-value=0.075 Score=49.87 Aligned_cols=23 Identities=17% Similarity=0.262 Sum_probs=20.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||.+.+..-
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCChHHHHHHHHhCC
Confidence 47999999999999999999754
No 420
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.02 E-value=0.26 Score=54.46 Aligned_cols=90 Identities=13% Similarity=0.041 Sum_probs=62.9
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCcc-ccCCCCHHHHHHH
Q 040110 109 QPTHSVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYNFKRILDDIMKSLMPTSSWL-KIMGKDYKSEKTI 187 (348)
Q Consensus 109 ~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~ 187 (348)
-+.-++|-|+|+.|+||||||.++... ....=..++|+......+..- ++.++.+.... -.....-++.+..
T Consensus 1428 ~prg~~iei~g~~~sGkttl~~~~~a~--~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~ 1500 (1706)
T 3cmw_A 1428 LPMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEI 1500 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHH--HHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHH
Confidence 345578999999999999999998865 222224678888888877654 77877765432 1223344666777
Q ss_pred HHHHhcC-CeEEEEEeCCC
Q 040110 188 LRDYLTN-KKYFTVLDDVW 205 (348)
Q Consensus 188 l~~~L~~-kr~LlVLDdv~ 205 (348)
+...++. .--++|+|.|.
T Consensus 1501 ~~~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1501 CDALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHHHHTCCSEEEESCST
T ss_pred HHHHHHcCCCCEEEEccHH
Confidence 7777754 56788999985
No 421
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.98 E-value=0.12 Score=42.70 Aligned_cols=25 Identities=12% Similarity=0.279 Sum_probs=21.0
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...-|+|+|.+|+|||||...+...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3446789999999999999999764
No 422
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.98 E-value=0.11 Score=42.40 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=22.2
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
....|+++|.+|+|||||...+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568899999999999999998764
No 423
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=91.97 E-value=0.092 Score=43.93 Aligned_cols=25 Identities=8% Similarity=0.068 Sum_probs=21.3
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...-|+|+|.+|+|||||...+.+.
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhhC
Confidence 3456889999999999999998765
No 424
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=91.97 E-value=0.086 Score=43.85 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=19.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHhc
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYN 134 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~ 134 (348)
..-|+|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34578999999999999998874
No 425
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.96 E-value=0.093 Score=44.15 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=20.8
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
...|.|+|.+|+|||||...+.+..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999998663
No 426
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=91.94 E-value=0.1 Score=47.05 Aligned_cols=25 Identities=12% Similarity=0.256 Sum_probs=21.9
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
....|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3458999999999999999999765
No 427
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=91.91 E-value=0.097 Score=43.74 Aligned_cols=42 Identities=19% Similarity=0.107 Sum_probs=27.2
Q ss_pred EEEEEE-CCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCCH
Q 040110 113 SVVAIL-DSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYNF 156 (348)
Q Consensus 113 ~vi~I~-G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~ 156 (348)
++|+|+ +-||+||||+|..++.....+ .. .++-+......+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~-g~-~vlliD~D~~~~~ 44 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRS-GY-NIAVVDTDPQMSL 44 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHT-TC-CEEEEECCTTCHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHC-CC-eEEEEECCCCCCH
Confidence 578888 579999999999887663221 11 3455555544443
No 428
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.89 E-value=0.045 Score=51.79 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.8
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhc
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYN 134 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~ 134 (348)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456899999999999999999987
No 429
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.88 E-value=0.093 Score=43.37 Aligned_cols=25 Identities=8% Similarity=0.146 Sum_probs=21.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
.--|.++|.+|+|||||...+.+..
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 3457899999999999999998764
No 430
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.88 E-value=0.094 Score=43.21 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=21.0
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
..-|+|+|.+|+|||||...+.+..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 3457899999999999999998653
No 431
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=91.87 E-value=1.3 Score=40.71 Aligned_cols=25 Identities=12% Similarity=0.258 Sum_probs=22.1
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
....|+|+|..|+|||||...+...
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4558999999999999999999875
No 432
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.86 E-value=0.086 Score=43.62 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=21.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
.--|+|+|.+|+|||||...+.+..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4467899999999999999998663
No 433
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=91.85 E-value=0.16 Score=46.79 Aligned_cols=27 Identities=11% Similarity=0.113 Sum_probs=21.7
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 109 QPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 109 ~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
....+++.+.|.||+||||+|..++..
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~ 41 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQ 41 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHH
Confidence 345678888999999999999887643
No 434
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.83 E-value=0.12 Score=42.89 Aligned_cols=26 Identities=15% Similarity=0.200 Sum_probs=21.7
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
...-|+|+|.+|+|||||...+.+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34567899999999999999988663
No 435
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=91.82 E-value=0.53 Score=45.94 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=33.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCC-HHHHHHHH
Q 040110 114 VVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYN-FKRILDDI 163 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i 163 (348)
.++|.|..|+|||+|+.++.+.. +-+.++++-+++... +.+++.++
T Consensus 229 r~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 229 TAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp EEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred eEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence 57899999999999999988752 224677888877654 44555554
No 436
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.80 E-value=0.086 Score=43.95 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=21.9
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
...-|+|+|.+|+|||||...+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34567899999999999999998764
No 437
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=91.79 E-value=0.17 Score=49.98 Aligned_cols=26 Identities=12% Similarity=0.005 Sum_probs=22.6
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
....+|.|.|++|+||||+|+.+...
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~ 419 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVT 419 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHH
Confidence 34568899999999999999999876
No 438
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.79 E-value=0.091 Score=51.05 Aligned_cols=26 Identities=4% Similarity=0.052 Sum_probs=22.7
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
...+|.+.|++|+||||+|+.+....
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred cceEEEecccCCCCHHHHHHHHHHHH
Confidence 34688899999999999999999883
No 439
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=91.79 E-value=0.1 Score=45.84 Aligned_cols=43 Identities=12% Similarity=-0.017 Sum_probs=28.5
Q ss_pred CCcEEEEEE-CCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCC
Q 040110 110 PTHSVVAIL-DSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYN 155 (348)
Q Consensus 110 ~~~~vi~I~-G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~ 155 (348)
...++|+|+ +-||+||||+|..++.... + .. .++-+......+
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~-g~-~VlliD~D~~~~ 68 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-K-NN-KVLLIDMDTQAS 68 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-T-TS-CEEEEEECTTCH
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-C-CC-CEEEEECCCCCC
Confidence 456788886 4699999999999887744 2 22 344555544433
No 440
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.79 E-value=0.1 Score=50.11 Aligned_cols=25 Identities=8% Similarity=0.134 Sum_probs=21.6
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...+|.++|++|+||||+++.+...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457889999999999999999865
No 441
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.76 E-value=0.095 Score=42.82 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=20.8
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
....|.|+|..|+|||||...+.+.
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Confidence 3446789999999999999999865
No 442
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.75 E-value=0.12 Score=42.98 Aligned_cols=26 Identities=12% Similarity=0.248 Sum_probs=21.1
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
....-|+|+|.+|+|||||...+...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 34556889999999999999999765
No 443
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.73 E-value=0.1 Score=42.95 Aligned_cols=24 Identities=13% Similarity=0.302 Sum_probs=20.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCc
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
.-|+|+|.+|+|||||...+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 467899999999999999998663
No 444
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=91.73 E-value=0.07 Score=48.18 Aligned_cols=22 Identities=9% Similarity=0.404 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 040110 114 VVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
-|+|+|.+|+|||||.+.++..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3589999999999999998753
No 445
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.70 E-value=0.09 Score=44.19 Aligned_cols=25 Identities=12% Similarity=0.211 Sum_probs=21.1
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...-|+|+|.+|+|||||...+.+.
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456789999999999999998765
No 446
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=91.68 E-value=0.089 Score=48.57 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=21.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|..|+|||||.+.+.+.
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999987
No 447
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=91.68 E-value=0.11 Score=44.75 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=20.4
Q ss_pred CcEEEEEEC-CCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILD-SRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G-~gGvGKTtLA~~v~~~ 135 (348)
..++|+|++ -||+||||+|..++..
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~ 28 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFA 28 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHH
Confidence 457888875 6999999999988766
No 448
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=91.65 E-value=0.13 Score=43.78 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=19.9
Q ss_pred cEEEEEECCCCCcHHHHHHHHhc
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYN 134 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~ 134 (348)
..-|+|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34688999999999999999874
No 449
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.63 E-value=0.075 Score=49.31 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||++.+...
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 47899999999999999999876
No 450
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.62 E-value=0.11 Score=43.70 Aligned_cols=25 Identities=12% Similarity=0.162 Sum_probs=21.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
..-|+|+|.+|+|||||...+....
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999998763
No 451
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=91.62 E-value=0.2 Score=45.87 Aligned_cols=26 Identities=12% Similarity=0.077 Sum_probs=21.1
Q ss_pred CCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 110 PTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 110 ~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...+++.+.|-||+||||+|..++..
T Consensus 14 ~~~~i~~~sgkGGvGKTt~a~~lA~~ 39 (334)
T 3iqw_A 14 RSLRWIFVGGKGGVGKTTTSCSLAIQ 39 (334)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHH
Confidence 34567778899999999999887654
No 452
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.60 E-value=0.07 Score=52.43 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=21.8
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
-.+++|+|+.|+|||||++.+...
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHh
Confidence 368999999999999999999877
No 453
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=91.55 E-value=0.095 Score=44.29 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=21.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+|+|.|+.|+||||+++.++..
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~ 29 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEH 29 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHH
Confidence 48999999999999999999887
No 454
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.55 E-value=0.13 Score=42.74 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=20.1
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
...-|.|+|.+|+|||||...+.+..
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34467899999999999999988653
No 455
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.54 E-value=0.11 Score=48.21 Aligned_cols=22 Identities=9% Similarity=0.221 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 040110 114 VVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
+++|+|++|+|||||.+.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcc
Confidence 7899999999999999999876
No 456
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=91.49 E-value=0.14 Score=47.68 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=22.6
Q ss_pred CCCcEEEEEEC-CCCCcHHHHHHHHhcC
Q 040110 109 QPTHSVVAILD-SRGFDKTAFAAEIYNN 135 (348)
Q Consensus 109 ~~~~~vi~I~G-~gGvGKTtLA~~v~~~ 135 (348)
....++|+|+| -||+||||+|..++..
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~ 167 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIA 167 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHH
Confidence 45678999985 8999999999888765
No 457
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.47 E-value=0.13 Score=45.52 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=21.0
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...|+++|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999998765
No 458
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.47 E-value=0.097 Score=43.71 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=20.6
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...-|+|+|.+|+|||||...+.+.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456789999999999999998765
No 459
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.47 E-value=0.18 Score=42.14 Aligned_cols=26 Identities=8% Similarity=0.273 Sum_probs=21.3
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
...-|+|+|.+|+|||||...+....
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34567899999999999999988653
No 460
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.46 E-value=0.1 Score=43.09 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 040110 114 VVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
-+.|.|.+|+||||||..+...
T Consensus 18 gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 5678999999999999998765
No 461
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.46 E-value=0.095 Score=43.26 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=20.5
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.--|+|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 345789999999999999998865
No 462
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=91.44 E-value=0.16 Score=52.79 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=20.0
Q ss_pred CcEEEEEECCCCCcHHHHHHHHh
Q 040110 111 THSVVAILDSRGFDKTAFAAEIY 133 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~ 133 (348)
.-.+++|+|+.|.|||||.+.+.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHH
Confidence 34689999999999999999875
No 463
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.36 E-value=0.12 Score=42.85 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=20.0
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
..-|.|+|..|+|||||...+.+..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457899999999999999987653
No 464
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.32 E-value=0.1 Score=44.09 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=20.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..-|+|+|.+|+|||||...+.+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999998765
No 465
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.31 E-value=0.1 Score=43.02 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=21.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
...|+|+|.+|+|||||...+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4467899999999999999987664
No 466
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.31 E-value=0.1 Score=43.55 Aligned_cols=26 Identities=8% Similarity=0.190 Sum_probs=21.6
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
...-|+|+|.+|+|||||...+.+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC
Confidence 34567899999999999999987653
No 467
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.31 E-value=0.1 Score=49.55 Aligned_cols=21 Identities=14% Similarity=0.474 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 040110 115 VAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 115 i~I~G~gGvGKTtLA~~v~~~ 135 (348)
++|+|..|+|||||.+.++..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 899999999999999999764
No 468
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.31 E-value=0.084 Score=48.36 Aligned_cols=107 Identities=14% Similarity=0.087 Sum_probs=57.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCCHHHHHHHHHHHhCCCCCccccCCCCHHHHHHHHHHHh
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYNFKRILDDIMKSLMPTSSWLKIMGKDYKSEKTILRDYL 192 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~L 192 (348)
.+++|+|+.|+|||||++.+..- +.. -...+.+.-......... -+.+. -... .-......+...|
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~--~~~-~~g~i~i~~~~e~~~~~~----~~~i~------~~~g-gg~~~r~~la~aL 237 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF--IPK-EERIISIEDTEEIVFKHH----KNYTQ------LFFG-GNITSADCLKSCL 237 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG--SCT-TSCEEEEESSCCCCCSSC----SSEEE------EECB-TTBCHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--CcC-CCcEEEECCeeccccccc----hhEEE------EEeC-CChhHHHHHHHHh
Confidence 37899999999999999999876 222 234444432111110000 00000 0000 1123345567778
Q ss_pred cCCeEEEEEeCCCChhhHHHHHhhCCCCCCCcEEEEEeCChhhh
Q 040110 193 TNKKYFTVLDDVWIEKIWDDLREALPDNQIGSRALITVGPHNIL 236 (348)
Q Consensus 193 ~~kr~LlVLDdv~~~~~~~~l~~~l~~~~~gskIlvTTR~~~v~ 236 (348)
..++=+|+||.+.+.+.++.+.. +.. + +.-+|+||...+..
T Consensus 238 ~~~p~ilildE~~~~e~~~~l~~-~~~-g-~~tvi~t~H~~~~~ 278 (330)
T 2pt7_A 238 RMRPDRIILGELRSSEAYDFYNV-LCS-G-HKGTLTTLHAGSSE 278 (330)
T ss_dssp TSCCSEEEECCCCSTHHHHHHHH-HHT-T-CCCEEEEEECSSHH
T ss_pred hhCCCEEEEcCCChHHHHHHHHH-Hhc-C-CCEEEEEEcccHHH
Confidence 88888999999987655554433 322 1 22266666655543
No 469
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=91.29 E-value=0.083 Score=44.73 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=22.4
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
....|+|+|..|+|||||...+....
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45578899999999999999998764
No 470
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=91.26 E-value=0.14 Score=44.76 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=22.0
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
....|+|+|.+|+|||||...+....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678899999999999999997653
No 471
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.24 E-value=0.079 Score=54.61 Aligned_cols=50 Identities=24% Similarity=0.286 Sum_probs=35.9
Q ss_pred cccccccccccHHHHHhhcCCCCC-------CCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPSSG-------LGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|.+... +.|.+.+.-+-. .+-.....+.++|++|+||||||+.+++.
T Consensus 478 di~gl~~vk---~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 478 DIGGLEDVK---RELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp SSSCCCCHH---HHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred ccccchhhh---hhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHH
Confidence 678888888 777776642100 11123445789999999999999999987
No 472
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.23 E-value=0.11 Score=42.86 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=20.9
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..-|+++|.+|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999999866
No 473
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.17 E-value=0.11 Score=43.52 Aligned_cols=24 Identities=8% Similarity=0.167 Sum_probs=20.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCc
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
.-|+|+|.+|+|||||...+....
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHhcCC
Confidence 357899999999999999998753
No 474
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.13 E-value=0.13 Score=43.32 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=20.8
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..-|.|+|.+|+|||||...+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346789999999999999998865
No 475
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=91.13 E-value=0.19 Score=43.14 Aligned_cols=39 Identities=18% Similarity=-0.009 Sum_probs=25.2
Q ss_pred EEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCC
Q 040110 115 VAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYN 155 (348)
Q Consensus 115 i~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~ 155 (348)
|+|.|-||+||||+|..++....... . .++-|......+
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g-~-~VlliD~D~~~~ 41 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDY-D-KIYAVDGDPDSC 41 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTC-S-CEEEEEECTTSC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCC-C-eEEEEeCCCCcC
Confidence 56689999999999999877632222 2 344455443333
No 476
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=91.10 E-value=0.2 Score=44.43 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=21.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...|+++|.+|+|||||...+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 346889999999999999999865
No 477
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=91.09 E-value=0.15 Score=50.84 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=22.2
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...+|.+.|++|+||||+|+.+...
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~ 75 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEY 75 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 4568899999999999999999876
No 478
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.09 E-value=0.13 Score=44.35 Aligned_cols=49 Identities=18% Similarity=0.263 Sum_probs=29.9
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCCCHHHHHHHH
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFYNFKRILDDI 163 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 163 (348)
-.++.|.|.+|+|||+||.+++.+...+ .-..+++++.. .+...+...+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~-~~~~v~~~s~E--~~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLE--ERARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESS--SCHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCceeeccc--CCHHHHHHHH
Confidence 3478899999999999998876431111 11245555543 3444554443
No 479
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=91.09 E-value=0.24 Score=44.44 Aligned_cols=28 Identities=11% Similarity=0.187 Sum_probs=23.6
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 109 QPTHSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 109 ~~~~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
......|+|+|..|+|||||..++....
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHCCC
Confidence 3456689999999999999999997663
No 480
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.07 E-value=0.12 Score=48.86 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=22.0
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.-.+++|+|+.|+|||||.+.+...
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhh
Confidence 4468999999999999999998765
No 481
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=91.03 E-value=0.22 Score=42.60 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=21.1
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..|.+-|+.|+||||+++.+.+.
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~ 28 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKK 28 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999999887
No 482
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.01 E-value=0.09 Score=50.48 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||++.++.-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 36899999999999999998765
No 483
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=91.00 E-value=0.13 Score=44.01 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 040110 114 VVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 114 vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
-|.|+|.+|+|||+|...+.++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4678999999999999998765
No 484
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.00 E-value=0.13 Score=52.45 Aligned_cols=50 Identities=14% Similarity=0.245 Sum_probs=35.2
Q ss_pred cccccccccccHHHHHhhcCCC-CC--CCCCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 83 ALLGLQSKIINLRNLHQRLPPS-SG--LGQPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 83 ~~vGr~~~~~~~~~l~~~L~~~-~~--~~~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.++|.+..+ +.+...+... .+ ........+.++|++|+|||++|+.+++.
T Consensus 459 ~v~g~~~~~---~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 459 LVFGQDKAI---EALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp TSCSCHHHH---HHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hccCHHHHH---HHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 477888877 7766655311 00 11233457889999999999999999887
No 485
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=90.98 E-value=0.13 Score=43.55 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=20.9
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
.--|.|+|.+|+|||||...+.+..
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3457799999999999999987653
No 486
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.93 E-value=0.095 Score=42.71 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=10.5
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
...-|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEEECCCCC------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999988755
No 487
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.88 E-value=0.12 Score=43.06 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=20.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCc
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
.-|+|+|.+|+|||||...+....
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 357899999999999999998653
No 488
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=90.82 E-value=0.17 Score=43.18 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=22.8
Q ss_pred CCCcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 109 QPTHSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 109 ~~~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
......|+++|.-|+||||+++.+...
T Consensus 6 ~~~~~~iglTGgigsGKStv~~~l~~~ 32 (210)
T 4i1u_A 6 HHHMYAIGLTGGIGSGKTTVADLFAAR 32 (210)
T ss_dssp CCSCCEEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHC
Confidence 345678999999999999999987653
No 489
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=90.77 E-value=0.12 Score=49.26 Aligned_cols=23 Identities=9% Similarity=0.221 Sum_probs=21.1
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|..|+|||||++.+.+.
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 37899999999999999999887
No 490
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=90.73 E-value=0.65 Score=45.47 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=38.5
Q ss_pred HHHhhcCCCCCCCCCCcEEEEEECCCCCcHHHHHHHHhcCccccCCcceeEEEEeCCCC-CHHHHHHHH
Q 040110 96 NLHQRLPPSSGLGQPTHSVVAILDSRGFDKTAFAAEIYNNNFVKFYFDCHAWVRVSNFY-NFKRILDDI 163 (348)
Q Consensus 96 ~l~~~L~~~~~~~~~~~~vi~I~G~gGvGKTtLA~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i 163 (348)
++++.|.+- ..+ ..++|.|..|+|||+|+.++.+.. +-+.++++-++... .+.+++.++
T Consensus 221 rvID~l~Pi----grG-qr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 221 RVIDTFFPV----TKG-GAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHHSCC----BTT-CEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhhccCCc----cCC-CEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence 555666522 122 257899999999999999998762 22467777777653 344444443
No 491
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.72 E-value=0.13 Score=50.45 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=20.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||++.++.-
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999875
No 492
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=90.69 E-value=0.34 Score=44.01 Aligned_cols=24 Identities=25% Similarity=0.133 Sum_probs=18.6
Q ss_pred cEEEEEECCCCCcHHHHHHHHhcC
Q 040110 112 HSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
..++...|.||+||||+|..++..
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~ 37 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALW 37 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHH
Confidence 445556689999999999887644
No 493
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.66 E-value=0.13 Score=48.81 Aligned_cols=22 Identities=9% Similarity=0.437 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHhcCc
Q 040110 115 VAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 115 i~I~G~gGvGKTtLA~~v~~~~ 136 (348)
|+|+|.+|+|||||...++...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 5999999999999999998653
No 494
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=90.63 E-value=0.17 Score=45.66 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=21.8
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcC
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
....|+|+|.+|+|||||..++...
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999865
No 495
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.61 E-value=0.14 Score=49.30 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=20.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||.+.+..-
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 68999999999999999998754
No 496
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.57 E-value=0.21 Score=39.98 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHh
Q 040110 112 HSVVAILDSRGFDKTAFAAEIY 133 (348)
Q Consensus 112 ~~vi~I~G~gGvGKTtLA~~v~ 133 (348)
..+.+|+|+.|.||||+..+++
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4578899999999999998875
No 497
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=90.51 E-value=0.13 Score=42.71 Aligned_cols=21 Identities=10% Similarity=0.177 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 040110 115 VAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 115 i~I~G~gGvGKTtLA~~v~~~ 135 (348)
+.|+|.+|+||||+|.++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 678999999999999998855
No 498
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=90.50 E-value=0.16 Score=44.88 Aligned_cols=26 Identities=12% Similarity=0.265 Sum_probs=22.0
Q ss_pred CcEEEEEECCCCCcHHHHHHHHhcCc
Q 040110 111 THSVVAILDSRGFDKTAFAAEIYNNN 136 (348)
Q Consensus 111 ~~~vi~I~G~gGvGKTtLA~~v~~~~ 136 (348)
....|+++|.+|+|||||...+....
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568899999999999999998764
No 499
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.45 E-value=0.15 Score=50.04 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNN 135 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~ 135 (348)
.+++|+|+.|+|||||++.+..-
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999864
No 500
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.39 E-value=0.15 Score=49.97 Aligned_cols=125 Identities=14% Similarity=0.060 Sum_probs=63.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcccc-CC--cc-eeEEEEeCC----CCCHHHHHHH--------------HHHHhCCC
Q 040110 113 SVVAILDSRGFDKTAFAAEIYNNNFVK-FY--FD-CHAWVRVSN----FYNFKRILDD--------------IMKSLMPT 170 (348)
Q Consensus 113 ~vi~I~G~gGvGKTtLA~~v~~~~~~~-~~--F~-~~~wv~~~~----~~~~~~~~~~--------------i~~~l~~~ 170 (348)
.+++|+|+.|+|||||++.++.-.... .. +. .+.++.-.. ..++.+++.. ++..++..
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 392 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGII 392 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCh
Confidence 478999999999999999998753211 11 12 233332211 1233333222 12222221
Q ss_pred CCc-cccCCCCHHHHH-HHHHHHhcCCeEEEEEeCCCCh------hhHHHHHhhCCCCCCCcEEEEEeCChhhhhh
Q 040110 171 SSW-LKIMGKDYKSEK-TILRDYLTNKKYFTVLDDVWIE------KIWDDLREALPDNQIGSRALITVGPHNILTS 238 (348)
Q Consensus 171 ~~~-~~~~~~~~~~~~-~~l~~~L~~kr~LlVLDdv~~~------~~~~~l~~~l~~~~~gskIlvTTR~~~v~~~ 238 (348)
... .....-+-.+.+ -.|.+.|..+.-+|+||.--+. ..+..+...+.. ..|..||++|-+...+..
T Consensus 393 ~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~-~~g~tvi~vsHd~~~~~~ 467 (538)
T 1yqt_A 393 DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME-KNEKTALVVEHDVLMIDY 467 (538)
T ss_dssp GGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-HHTCEEEEECSCHHHHHH
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHH
Confidence 000 012223333333 3466677788889999997653 122222222211 124457888887665553
Done!