Query 040111
Match_columns 133
No_of_seqs 140 out of 1282
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 05:14:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040111.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040111hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01802 AN1_N ubiquitin-like d 99.7 5E-18 1.1E-22 115.0 4.9 80 29-108 9-94 (103)
2 cd01807 GDX_N ubiquitin-like d 99.7 4.8E-18 1E-22 108.3 3.1 67 43-109 2-68 (74)
3 cd01810 ISG15_repeat2 ISG15 ub 99.7 6.6E-18 1.4E-22 107.7 3.7 66 44-109 1-66 (74)
4 cd01797 NIRF_N amino-terminal 99.7 1.4E-17 3E-22 107.5 3.6 68 43-110 2-71 (78)
5 cd01798 parkin_N amino-termina 99.7 1.4E-17 3.1E-22 104.9 3.3 67 44-110 1-67 (70)
6 cd01794 DC_UbP_C dendritic cel 99.7 1.7E-17 3.6E-22 105.1 3.5 65 44-108 1-65 (70)
7 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 5.2E-17 1.1E-21 103.6 3.9 66 44-109 4-69 (73)
8 cd01796 DDI1_N DNA damage indu 99.7 4.2E-17 9.1E-22 103.4 3.2 68 44-111 1-70 (71)
9 PTZ00044 ubiquitin; Provisiona 99.6 7.7E-17 1.7E-21 102.8 3.3 64 43-106 2-65 (76)
10 cd01793 Fubi Fubi ubiquitin-li 99.6 1E-16 2.2E-21 102.2 3.6 63 43-107 2-64 (74)
11 cd01805 RAD23_N Ubiquitin-like 99.6 3E-16 6.4E-21 100.2 3.7 67 43-109 2-70 (77)
12 PF00240 ubiquitin: Ubiquitin 99.6 3.7E-16 8E-21 97.7 3.3 64 47-110 1-64 (69)
13 KOG0004 Ubiquitin/40S ribosoma 99.6 4.3E-16 9.4E-21 111.0 3.9 72 43-114 2-78 (156)
14 cd01804 midnolin_N Ubiquitin-l 99.6 6.7E-16 1.5E-20 99.5 3.5 65 43-108 3-67 (78)
15 cd01806 Nedd8 Nebb8-like ubiq 99.6 9.2E-16 2E-20 97.4 3.8 66 44-109 3-68 (76)
16 cd01792 ISG15_repeat1 ISG15 ub 99.6 6.8E-16 1.5E-20 99.8 3.1 66 43-108 4-71 (80)
17 cd01803 Ubiquitin Ubiquitin. U 99.6 7.9E-16 1.7E-20 97.7 3.4 66 43-108 2-67 (76)
18 cd01809 Scythe_N Ubiquitin-lik 99.6 9.9E-16 2.2E-20 96.3 3.4 66 44-109 3-68 (72)
19 KOG0005 Ubiquitin-like protein 99.6 5E-16 1.1E-20 94.2 1.9 63 44-106 3-65 (70)
20 KOG0003 Ubiquitin/60s ribosoma 99.6 1.4E-16 2.9E-21 107.2 -1.0 64 43-106 2-65 (128)
21 cd01808 hPLIC_N Ubiquitin-like 99.6 1.5E-15 3.3E-20 95.9 3.3 64 44-108 3-66 (71)
22 cd01800 SF3a120_C Ubiquitin-li 99.5 6.3E-15 1.4E-19 94.4 3.4 61 49-109 5-65 (76)
23 cd01812 BAG1_N Ubiquitin-like 99.5 1.2E-14 2.6E-19 91.2 2.8 64 44-108 3-66 (71)
24 cd01790 Herp_N Homocysteine-re 99.5 1.8E-14 4E-19 93.0 3.2 58 44-101 4-65 (79)
25 cd01813 UBP_N UBP ubiquitin pr 99.5 4.3E-14 9.4E-19 90.3 3.3 59 50-108 8-69 (74)
26 smart00213 UBQ Ubiquitin homol 99.4 5.1E-14 1.1E-18 86.0 2.7 60 44-104 3-62 (64)
27 cd01799 Hoil1_N Ubiquitin-like 99.4 8.8E-14 1.9E-18 89.1 3.1 58 48-106 9-67 (75)
28 cd01815 BMSC_UbP_N Ubiquitin-l 99.4 1.3E-13 2.9E-18 88.1 3.2 50 60-109 19-71 (75)
29 TIGR00601 rad23 UV excision re 99.4 2.3E-13 5E-18 110.4 3.6 65 43-107 2-69 (378)
30 cd01763 Sumo Small ubiquitin-r 99.3 1.6E-12 3.5E-17 85.3 4.3 65 44-108 14-78 (87)
31 cd01769 UBL Ubiquitin-like dom 99.3 2.8E-12 6.1E-17 79.2 4.1 64 46-109 2-65 (69)
32 cd01793 Fubi Fubi ubiquitin-li 99.2 1.8E-12 3.8E-17 82.5 1.2 43 1-43 28-71 (74)
33 cd01797 NIRF_N amino-terminal 99.2 1.9E-12 4E-17 83.5 0.6 43 1-43 32-75 (78)
34 KOG0011 Nucleotide excision re 99.2 6.4E-12 1.4E-16 99.1 3.7 68 43-110 2-71 (340)
35 cd01807 GDX_N ubiquitin-like d 99.2 2.1E-12 4.7E-17 82.0 0.6 43 1-43 30-73 (74)
36 cd01814 NTGP5 Ubiquitin-like N 99.2 9.5E-12 2.1E-16 84.8 3.6 58 44-101 7-72 (113)
37 KOG0004 Ubiquitin/40S ribosoma 99.2 4.8E-12 1E-16 90.3 0.4 43 1-43 30-73 (156)
38 cd01794 DC_UbP_C dendritic cel 99.2 5.9E-12 1.3E-16 79.5 0.6 41 1-41 28-69 (70)
39 cd01815 BMSC_UbP_N Ubiquitin-l 99.2 5.7E-12 1.2E-16 80.5 0.4 40 2-41 31-74 (75)
40 cd01795 USP48_C USP ubiquitin- 99.1 6.6E-11 1.4E-15 79.0 4.6 59 52-110 15-74 (107)
41 cd01798 parkin_N amino-termina 99.1 1.2E-11 2.6E-16 77.7 0.7 42 1-42 28-70 (70)
42 KOG0005 Ubiquitin-like protein 99.1 7.1E-12 1.5E-16 76.1 -0.5 40 1-40 30-70 (70)
43 cd01810 ISG15_repeat2 ISG15 ub 99.1 2.2E-11 4.8E-16 77.4 0.9 43 1-43 28-71 (74)
44 cd01802 AN1_N ubiquitin-like d 99.1 3.6E-11 7.9E-16 81.4 1.1 42 1-42 57-99 (103)
45 KOG0003 Ubiquitin/60s ribosoma 99.1 9.5E-12 2.1E-16 83.9 -2.2 43 1-43 30-73 (128)
46 cd01791 Ubl5 UBL5 ubiquitin-li 99.0 3.7E-11 8E-16 76.6 0.4 41 1-41 31-72 (73)
47 cd01808 hPLIC_N Ubiquitin-like 99.0 5.6E-11 1.2E-15 74.9 0.6 42 1-42 29-71 (71)
48 PF00240 ubiquitin: Ubiquitin 99.0 8.2E-11 1.8E-15 73.3 1.2 43 1-43 25-68 (69)
49 PTZ00044 ubiquitin; Provisiona 99.0 7.6E-11 1.6E-15 74.9 0.6 42 1-42 30-72 (76)
50 KOG0010 Ubiquitin-like protein 99.0 3.2E-10 7E-15 93.6 4.3 60 43-103 17-76 (493)
51 cd01800 SF3a120_C Ubiquitin-li 99.0 1.5E-10 3.4E-15 73.9 0.5 43 1-43 27-70 (76)
52 cd01796 DDI1_N DNA damage indu 98.9 2E-10 4.4E-15 72.5 0.6 40 1-40 29-70 (71)
53 cd01805 RAD23_N Ubiquitin-like 98.9 2.7E-10 5.9E-15 72.4 1.1 43 1-43 30-75 (77)
54 cd01809 Scythe_N Ubiquitin-lik 98.9 2.3E-10 4.9E-15 71.6 0.7 42 1-42 30-72 (72)
55 cd01806 Nedd8 Nebb8-like ubiq 98.9 3.7E-10 8.1E-15 71.4 1.7 42 1-42 30-72 (76)
56 cd01804 midnolin_N Ubiquitin-l 98.9 3.6E-10 7.8E-15 72.7 0.5 42 1-43 31-73 (78)
57 cd01814 NTGP5 Ubiquitin-like N 98.9 9.7E-10 2.1E-14 75.0 2.4 51 3-53 42-101 (113)
58 cd01803 Ubiquitin Ubiquitin. U 98.9 5.5E-10 1.2E-14 70.6 0.8 42 1-42 30-72 (76)
59 cd01792 ISG15_repeat1 ISG15 ub 98.8 4.2E-10 9E-15 72.6 -0.3 43 1-43 32-77 (80)
60 KOG0001 Ubiquitin and ubiquiti 98.8 3.3E-09 7.2E-14 65.0 3.6 63 44-106 2-64 (75)
61 PF11976 Rad60-SLD: Ubiquitin- 98.8 2.4E-09 5.1E-14 67.3 1.7 63 44-106 3-66 (72)
62 cd01812 BAG1_N Ubiquitin-like 98.7 2.1E-09 4.6E-14 67.1 0.5 41 1-41 29-70 (71)
63 cd01790 Herp_N Homocysteine-re 98.7 2.9E-09 6.4E-14 68.8 0.4 35 7-41 41-78 (79)
64 PLN02560 enoyl-CoA reductase 98.7 2.8E-08 6E-13 79.0 4.6 67 44-110 3-80 (308)
65 cd01789 Alp11_N Ubiquitin-like 98.6 4.8E-08 1E-12 63.7 4.7 56 53-108 14-76 (84)
66 cd01763 Sumo Small ubiquitin-r 98.6 1.1E-08 2.4E-13 67.0 1.7 42 2-43 42-84 (87)
67 cd01788 ElonginB Ubiquitin-lik 98.6 2E-08 4.4E-13 68.5 2.8 52 53-104 13-64 (119)
68 cd01813 UBP_N UBP ubiquitin pr 98.6 6E-09 1.3E-13 66.4 0.0 41 1-41 29-73 (74)
69 cd01799 Hoil1_N Ubiquitin-like 98.5 1.9E-08 4.1E-13 64.3 -0.0 40 1-41 32-74 (75)
70 PF14560 Ubiquitin_2: Ubiquiti 98.5 8E-08 1.7E-12 62.7 2.8 58 52-109 14-79 (87)
71 cd01795 USP48_C USP ubiquitin- 98.5 4.5E-08 9.7E-13 65.5 1.1 42 1-42 34-77 (107)
72 KOG4248 Ubiquitin-like protein 98.5 1E-07 2.3E-12 84.5 3.1 59 44-102 5-63 (1143)
73 KOG0010 Ubiquitin-like protein 98.4 6E-08 1.3E-12 80.3 0.1 43 1-43 44-87 (493)
74 smart00213 UBQ Ubiquitin homol 98.4 8.7E-08 1.9E-12 58.0 0.8 35 1-35 29-64 (64)
75 cd01801 Tsc13_N Ubiquitin-like 98.4 7E-07 1.5E-11 57.0 4.7 52 59-110 20-74 (77)
76 TIGR00601 rad23 UV excision re 98.3 1.7E-07 3.6E-12 76.4 1.1 44 2-45 31-78 (378)
77 PF13881 Rad60-SLD_2: Ubiquiti 98.3 5.2E-07 1.1E-11 61.9 3.4 56 48-103 9-72 (111)
78 cd00196 UBQ Ubiquitin-like pro 98.3 1.2E-06 2.7E-11 50.7 3.8 59 48-106 4-62 (69)
79 cd01769 UBL Ubiquitin-like dom 98.2 2.8E-07 6.1E-12 56.5 0.5 41 1-41 27-68 (69)
80 KOG0001 Ubiquitin and ubiquiti 98.1 1.9E-06 4.1E-11 52.5 2.2 42 1-42 29-71 (75)
81 KOG0011 Nucleotide excision re 97.8 5.7E-06 1.2E-10 65.8 1.2 39 7-45 38-77 (340)
82 KOG0006 E3 ubiquitin-protein l 97.8 2.4E-05 5.1E-10 62.3 4.6 72 51-125 13-86 (446)
83 PF11976 Rad60-SLD: Ubiquitin- 97.8 7.4E-06 1.6E-10 51.2 1.3 38 3-40 32-71 (72)
84 cd01811 OASL_repeat1 2'-5' oli 97.8 8.8E-05 1.9E-09 47.2 5.3 59 44-103 3-66 (80)
85 PF11543 UN_NPL4: Nuclear pore 97.7 1.7E-05 3.7E-10 51.3 1.4 65 44-109 7-76 (80)
86 cd01789 Alp11_N Ubiquitin-like 97.6 2.2E-05 4.8E-10 51.0 1.2 39 2-40 33-79 (84)
87 KOG4495 RNA polymerase II tran 97.6 5E-05 1.1E-09 50.5 2.4 53 52-104 12-66 (110)
88 KOG4248 Ubiquitin-like protein 97.4 5.6E-05 1.2E-09 67.6 1.2 43 1-43 32-74 (1143)
89 KOG1872 Ubiquitin-specific pro 97.3 0.00027 5.9E-09 58.7 4.5 64 50-113 11-75 (473)
90 PF10302 DUF2407: DUF2407 ubiq 97.3 0.00033 7.1E-09 46.9 4.1 47 54-100 14-64 (97)
91 PF13881 Rad60-SLD_2: Ubiquiti 97.3 0.00015 3.2E-09 49.7 2.1 36 8-43 47-89 (111)
92 PF13019 Telomere_Sde2: Telome 97.1 0.0012 2.6E-08 48.0 5.5 73 44-116 3-92 (162)
93 cd01801 Tsc13_N Ubiquitin-like 96.9 0.00058 1.3E-08 43.4 1.7 34 6-39 38-74 (77)
94 smart00166 UBX Domain present 96.7 0.0043 9.4E-08 39.6 4.8 67 44-110 7-78 (80)
95 KOG3493 Ubiquitin-like protein 96.7 0.00041 8.9E-09 43.0 -0.1 58 46-103 6-63 (73)
96 cd01811 OASL_repeat1 2'-5' oli 96.7 0.00064 1.4E-08 43.3 0.8 39 1-40 30-74 (80)
97 cd01788 ElonginB Ubiquitin-lik 96.6 0.00094 2E-08 45.8 1.1 60 3-67 33-100 (119)
98 PF11470 TUG-UBL1: GLUT4 regul 96.6 0.0019 4.1E-08 40.2 2.3 58 48-105 3-60 (65)
99 PF00789 UBX: UBX domain; Int 96.6 0.004 8.6E-08 39.7 3.9 67 44-110 9-80 (82)
100 PF14560 Ubiquitin_2: Ubiquiti 96.5 0.00061 1.3E-08 44.2 -0.2 39 2-40 34-81 (87)
101 cd01767 UBX UBX (ubiquitin reg 96.2 0.016 3.4E-07 36.7 5.0 64 44-108 5-73 (77)
102 cd01772 SAKS1_UBX SAKS1-like U 96.0 0.018 3.9E-07 36.8 4.8 66 44-110 7-77 (79)
103 PLN02560 enoyl-CoA reductase 95.7 0.0042 9.1E-08 49.6 1.2 38 2-39 34-80 (308)
104 cd01770 p47_UBX p47-like ubiqu 95.7 0.035 7.5E-07 35.6 5.0 65 43-107 6-74 (79)
105 KOG0006 E3 ubiquitin-protein l 95.6 0.0087 1.9E-07 48.0 2.3 40 2-41 34-74 (446)
106 KOG1769 Ubiquitin-like protein 95.5 0.034 7.3E-07 37.3 4.7 59 44-102 23-81 (99)
107 cd00196 UBQ Ubiquitin-like pro 95.4 0.0058 1.3E-07 34.7 0.7 39 2-40 28-67 (69)
108 cd01774 Faf1_like2_UBX Faf1 ik 95.2 0.053 1.2E-06 35.2 4.8 66 44-110 7-82 (85)
109 KOG0013 Uncharacterized conser 95.0 0.032 6.9E-07 42.3 3.7 56 50-105 155-210 (231)
110 cd01773 Faf1_like1_UBX Faf1 ik 94.7 0.087 1.9E-06 34.2 4.7 67 43-110 7-78 (82)
111 smart00455 RBD Raf-like Ras-bi 94.7 0.058 1.2E-06 33.8 3.7 48 45-92 3-52 (70)
112 cd01760 RBD Ubiquitin-like dom 94.3 0.055 1.2E-06 34.2 3.0 44 45-88 3-46 (72)
113 PF08817 YukD: WXG100 protein 94.3 0.027 5.8E-07 35.9 1.5 62 45-106 6-74 (79)
114 cd01771 Faf1_UBX Faf1 UBX doma 93.6 0.19 4.2E-06 32.2 4.7 66 44-110 7-77 (80)
115 cd06406 PB1_P67 A PB1 domain i 93.6 0.061 1.3E-06 34.8 2.2 47 53-99 12-58 (80)
116 cd06409 PB1_MUG70 The MUG70 pr 93.3 0.15 3.2E-06 33.4 3.8 42 45-86 4-48 (86)
117 KOG1872 Ubiquitin-specific pro 91.8 0.099 2.1E-06 43.8 1.8 41 3-43 35-76 (473)
118 PF12754 Blt1: Cell-cycle cont 91.5 0.056 1.2E-06 43.1 0.0 73 44-116 81-185 (309)
119 COG5227 SMT3 Ubiquitin-like pr 91.1 0.57 1.2E-05 31.0 4.5 55 49-103 32-86 (103)
120 KOG4583 Membrane-associated ER 90.9 0.084 1.8E-06 42.7 0.5 58 44-101 12-73 (391)
121 PRK06437 hypothetical protein; 90.1 1.4 3E-05 27.1 5.5 49 50-102 9-57 (67)
122 PF09379 FERM_N: FERM N-termin 90.1 0.26 5.6E-06 30.8 2.2 56 46-101 1-63 (80)
123 PF11620 GABP-alpha: GA-bindin 89.8 0.67 1.5E-05 30.3 3.9 55 54-108 5-59 (88)
124 PRK08364 sulfur carrier protei 89.6 1.6 3.4E-05 27.0 5.5 55 53-111 15-69 (70)
125 cd01817 RGS12_RBD Ubiquitin do 89.4 0.69 1.5E-05 29.4 3.7 44 46-89 4-47 (73)
126 PF02196 RBD: Raf-like Ras-bin 89.4 0.33 7.1E-06 30.4 2.2 44 44-87 3-46 (71)
127 KOG1769 Ubiquitin-like protein 89.2 0.28 6.1E-06 32.9 1.9 40 3-42 52-92 (99)
128 PF10302 DUF2407: DUF2407 ubiq 88.2 0.27 5.8E-06 32.8 1.3 21 8-28 42-62 (97)
129 KOG0007 Splicing factor 3a, su 87.5 0.27 5.9E-06 39.7 1.2 51 48-98 289-340 (341)
130 cd00754 MoaD Ubiquitin domain 87.2 1.8 3.8E-05 26.9 4.6 50 53-102 17-70 (80)
131 KOG1639 Steroid reductase requ 87.0 0.63 1.4E-05 36.3 2.9 54 56-109 17-75 (297)
132 PF15044 CLU_N: Mitochondrial 86.4 0.79 1.7E-05 29.1 2.7 43 58-100 1-44 (76)
133 PF11543 UN_NPL4: Nuclear pore 85.7 0.15 3.2E-06 32.8 -1.0 40 1-40 33-78 (80)
134 cd01818 TIAM1_RBD Ubiquitin do 85.6 1.2 2.7E-05 28.4 3.2 49 46-94 4-52 (77)
135 PF08817 YukD: WXG100 protein 85.6 0.37 8E-06 30.5 0.8 24 16-39 54-78 (79)
136 PF10790 DUF2604: Protein of U 84.6 2.8 6.2E-05 26.1 4.4 61 50-110 4-68 (76)
137 cd06410 PB1_UP2 Uncharacterize 84.2 3.5 7.6E-05 27.4 5.1 40 47-87 18-57 (97)
138 smart00666 PB1 PB1 domain. Pho 83.9 2.4 5.2E-05 26.4 4.1 40 50-89 9-48 (81)
139 cd01787 GRB7_RA RA (RAS-associ 83.3 2.8 6.1E-05 27.4 4.2 57 44-100 5-62 (85)
140 cd06407 PB1_NLP A PB1 domain i 81.9 3.1 6.8E-05 26.7 4.0 41 50-90 8-49 (82)
141 cd06411 PB1_p51 The PB1 domain 81.3 2.4 5.1E-05 27.3 3.2 38 53-90 8-45 (78)
142 PF12436 USP7_ICP0_bdg: ICP0-b 80.6 2 4.2E-05 33.2 3.2 83 3-85 106-223 (249)
143 cd00565 ThiS ThiaminS ubiquiti 80.5 8.4 0.00018 23.1 5.5 53 56-112 9-65 (65)
144 COG5417 Uncharacterized small 80.2 3 6.6E-05 26.6 3.4 58 47-104 12-74 (81)
145 KOG2086 Protein tyrosine phosp 79.5 1.7 3.7E-05 35.7 2.7 61 44-104 308-372 (380)
146 KOG4250 TANK binding protein k 79.3 2 4.4E-05 38.0 3.2 43 50-92 323-365 (732)
147 PF11620 GABP-alpha: GA-bindin 78.6 1.7 3.7E-05 28.4 1.9 41 2-42 23-64 (88)
148 TIGR01682 moaD molybdopterin c 78.4 8.8 0.00019 23.9 5.3 49 54-102 18-70 (80)
149 cd05992 PB1 The PB1 domain is 78.2 6.9 0.00015 24.1 4.7 39 51-89 9-48 (81)
150 PRK07440 hypothetical protein; 78.0 14 0.00029 22.9 5.9 57 50-112 10-70 (70)
151 cd01777 SNX27_RA Ubiquitin dom 77.8 4.3 9.3E-05 26.6 3.6 56 45-100 5-69 (87)
152 KOG0013 Uncharacterized conser 77.7 1.2 2.6E-05 33.9 1.2 39 3-41 178-217 (231)
153 smart00295 B41 Band 4.1 homolo 77.1 2.5 5.3E-05 30.6 2.7 81 44-127 6-98 (207)
154 KOG3206 Alpha-tubulin folding 76.0 4.5 9.8E-05 30.8 3.8 49 54-102 15-70 (234)
155 TIGR01683 thiS thiamine biosyn 75.4 15 0.00032 22.0 5.7 57 50-112 4-64 (64)
156 COG2104 ThiS Sulfur transfer p 74.5 17 0.00037 22.5 5.6 53 56-112 12-68 (68)
157 PTZ00380 microtubule-associate 73.9 4.1 8.9E-05 28.3 2.9 44 57-100 46-89 (121)
158 PRK06488 sulfur carrier protei 73.4 14 0.0003 22.2 5.0 56 50-112 6-65 (65)
159 cd06408 PB1_NoxR The PB1 domai 72.7 6.7 0.00015 25.6 3.6 45 44-89 3-48 (86)
160 PF00564 PB1: PB1 domain; Int 71.0 7.2 0.00016 24.2 3.4 38 51-88 10-48 (84)
161 cd01768 RA RA (Ras-associating 70.8 8.4 0.00018 24.3 3.8 35 51-85 12-48 (87)
162 KOG4572 Predicted DNA-binding 67.4 6.9 0.00015 35.7 3.6 52 50-101 3-56 (1424)
163 PLN02799 Molybdopterin synthas 65.7 9.6 0.00021 23.9 3.2 50 52-101 19-71 (82)
164 KOG2689 Predicted ubiquitin re 64.7 9.1 0.0002 30.3 3.5 66 44-109 213-283 (290)
165 PF11470 TUG-UBL1: GLUT4 regul 63.0 3.2 7E-05 25.6 0.6 37 3-39 28-65 (65)
166 PF00788 RA: Ras association ( 62.6 9.5 0.00021 23.9 2.8 33 53-85 18-52 (93)
167 KOG4583 Membrane-associated ER 62.2 1.1 2.3E-05 36.5 -2.1 34 10-43 52-88 (391)
168 smart00314 RA Ras association 61.6 19 0.00042 22.7 4.2 36 50-85 14-51 (90)
169 PF14533 USP7_C2: Ubiquitin-sp 59.7 4.9 0.00011 30.2 1.2 29 50-78 131-159 (213)
170 PF14453 ThiS-like: ThiS-like 55.1 26 0.00055 21.1 3.5 41 55-101 9-49 (57)
171 PF02597 ThiS: ThiS family; I 54.9 18 0.0004 21.9 3.1 49 53-101 13-66 (77)
172 PF09469 Cobl: Cordon-bleu ubi 54.8 9.3 0.0002 24.5 1.6 36 70-105 2-40 (79)
173 cd01816 Raf_RBD Ubiquitin doma 54.6 28 0.0006 22.1 3.8 41 45-85 3-43 (74)
174 PF11069 DUF2870: Protein of u 54.6 6.6 0.00014 26.3 1.0 18 83-100 3-20 (98)
175 PRK05659 sulfur carrier protei 53.2 46 0.001 19.7 6.0 49 50-104 6-58 (66)
176 PF02991 Atg8: Autophagy prote 52.2 29 0.00062 23.3 3.8 44 57-100 38-82 (104)
177 PF02505 MCR_D: Methyl-coenzym 50.9 14 0.00029 26.8 2.2 44 53-100 76-120 (153)
178 cd06398 PB1_Joka2 The PB1 doma 49.1 35 0.00077 22.3 3.8 39 51-89 9-53 (91)
179 cd01776 Rin1_RA Ubiquitin doma 48.3 36 0.00078 22.2 3.6 32 54-85 16-48 (87)
180 COG5227 SMT3 Ubiquitin-like pr 48.3 14 0.0003 24.5 1.7 39 4-42 57-96 (103)
181 cd06396 PB1_NBR1 The PB1 domai 47.3 29 0.00063 22.3 3.1 29 50-78 8-38 (81)
182 PRK08053 sulfur carrier protei 46.6 63 0.0014 19.3 5.9 57 50-112 6-66 (66)
183 PRK11840 bifunctional sulfur c 45.2 80 0.0017 25.7 5.9 63 50-118 6-72 (326)
184 TIGR03260 met_CoM_red_D methyl 44.8 18 0.0004 26.0 2.0 44 53-100 75-118 (150)
185 cd01611 GABARAP Ubiquitin doma 44.5 38 0.00081 23.0 3.5 45 56-100 45-90 (112)
186 TIGR01687 moaD_arch MoaD famil 42.9 83 0.0018 19.7 5.5 47 53-100 17-76 (88)
187 PF02017 CIDE-N: CIDE-N domain 42.3 53 0.0012 21.0 3.7 41 53-94 13-55 (78)
188 KOG4165 Gamma-glutamyl phospha 40.8 11 0.00024 30.9 0.4 15 112-126 355-369 (433)
189 cd01775 CYR1_RA Ubiquitin doma 40.0 64 0.0014 21.5 3.9 37 49-85 10-47 (97)
190 KOG1639 Steroid reductase requ 38.5 9.1 0.0002 30.1 -0.3 34 5-38 37-75 (297)
191 PF00515 TPR_1: Tetratricopept 38.2 2.5 5.3E-05 21.5 -2.5 14 114-127 21-34 (34)
192 PF14451 Ub-Mut7C: Mut7-C ubiq 38.0 68 0.0015 20.5 3.8 45 51-99 22-67 (81)
193 cd01778 RASSF1_RA Ubiquitin-li 37.1 1E+02 0.0022 20.5 4.5 37 49-85 14-52 (96)
194 smart00266 CAD Domains present 36.6 52 0.0011 20.9 3.0 43 52-95 10-54 (74)
195 PF08783 DWNN: DWNN domain; I 36.1 43 0.00092 21.2 2.5 24 54-77 12-36 (74)
196 KOG4261 Talin [Cytoskeleton] 35.8 31 0.00068 31.4 2.5 75 18-92 58-136 (1003)
197 PF02192 PI3K_p85B: PI3-kinase 35.4 39 0.00083 21.6 2.3 22 54-75 2-23 (78)
198 cd06397 PB1_UP1 Uncharacterize 34.5 74 0.0016 20.6 3.5 38 50-87 8-45 (82)
199 PRK05738 rplW 50S ribosomal pr 34.3 81 0.0017 20.6 3.8 42 51-92 20-62 (92)
200 COG1348 NifH Nitrogenase subun 34.0 17 0.00037 28.5 0.5 14 102-115 123-136 (278)
201 KOG2507 Ubiquitin regulatory p 33.5 42 0.00091 28.4 2.7 63 44-106 317-384 (506)
202 KOG3439 Protein conjugation fa 33.5 73 0.0016 21.9 3.5 39 54-92 47-85 (116)
203 KOG2982 Uncharacterized conser 32.7 69 0.0015 26.3 3.8 49 56-106 352-403 (418)
204 PF00276 Ribosomal_L23: Riboso 31.3 53 0.0012 21.3 2.5 41 52-92 21-62 (91)
205 smart00143 PI3K_p85B PI3-kinas 31.2 48 0.001 21.2 2.2 22 54-75 2-23 (78)
206 KOG0688 Peptide chain release 30.8 22 0.00049 29.1 0.7 61 54-114 31-97 (431)
207 PF08825 E2_bind: E2 binding d 30.7 54 0.0012 21.1 2.4 34 56-89 1-41 (84)
208 cd01615 CIDE_N CIDE_N domain, 30.6 71 0.0015 20.4 2.9 42 52-94 12-55 (78)
209 PF06200 tify: tify domain; I 29.5 61 0.0013 17.6 2.1 13 9-21 5-17 (36)
210 cd06539 CIDE_N_A CIDE_N domain 29.1 84 0.0018 20.1 3.0 50 44-95 5-56 (78)
211 PF08337 Plexin_cytopl: Plexin 26.5 1.1E+02 0.0024 26.6 4.2 59 50-108 200-284 (539)
212 PF11816 DUF3337: Domain of un 25.9 89 0.0019 25.1 3.4 46 55-100 251-311 (331)
213 PF07719 TPR_2: Tetratricopept 24.6 9.9 0.00022 18.9 -1.6 14 114-127 21-34 (34)
214 KOG2561 Adaptor protein NUB1, 24.2 56 0.0012 28.0 2.0 43 60-102 58-100 (568)
215 TIGR03636 L23_arch archaeal ri 23.9 1.3E+02 0.0028 19.0 3.2 34 52-85 15-48 (77)
216 TIGR03676 aRF1/eRF1 peptide ch 23.3 14 0.00031 30.6 -1.6 25 54-78 23-47 (403)
217 PF11996 DUF3491: Protein of u 23.1 42 0.0009 31.0 1.1 28 90-117 45-77 (936)
218 cd06536 CIDE_N_ICAD CIDE_N dom 23.0 1.1E+02 0.0024 19.7 2.8 49 45-95 6-58 (80)
219 PF14533 USP7_C2: Ubiquitin-sp 23.0 96 0.0021 23.2 2.9 48 52-99 34-89 (213)
220 PRK12792 flhA flagellar biosyn 22.5 2E+02 0.0044 25.8 5.2 62 61-128 382-443 (694)
221 COG0299 PurN Folate-dependent 22.4 1E+02 0.0023 23.2 3.0 45 28-76 125-174 (200)
222 KOG2561 Adaptor protein NUB1, 22.4 21 0.00045 30.4 -0.8 42 1-42 69-111 (568)
223 TIGR01398 FlhA flagellar biosy 22.3 2E+02 0.0043 25.8 5.1 62 61-128 368-429 (678)
224 KOG0012 DNA damage inducible p 22.1 96 0.0021 25.6 2.9 55 50-104 11-67 (380)
225 cd01612 APG12_C Ubiquitin-like 21.9 1.6E+02 0.0036 18.9 3.5 46 55-100 19-66 (87)
226 cd06538 CIDE_N_FSP27 CIDE_N do 21.6 1.3E+02 0.0029 19.2 2.9 42 52-94 12-54 (79)
227 PF09079 Cdc6_C: CDC6, C termi 21.4 54 0.0012 20.5 1.1 62 63-129 20-82 (85)
228 COG3914 Spy Predicted O-linked 21.4 34 0.00075 30.0 0.2 38 96-133 420-466 (620)
229 PF13431 TPR_17: Tetratricopep 21.2 18 0.00038 18.9 -1.0 12 118-129 3-14 (34)
230 PRK14548 50S ribosomal protein 21.1 1.6E+02 0.0034 19.0 3.2 34 52-85 22-55 (84)
231 PF06624 RAMP4: Ribosome assoc 21.0 22 0.00048 21.8 -0.7 23 92-114 32-54 (63)
232 PF14732 UAE_UbL: Ubiquitin/SU 21.0 1.7E+02 0.0038 18.6 3.5 50 60-109 7-65 (87)
233 KOG1821 Uncharacterized conser 20.3 19 0.00042 30.3 -1.4 77 4-80 282-376 (662)
No 1
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.72 E-value=5e-18 Score=114.98 Aligned_cols=80 Identities=19% Similarity=0.085 Sum_probs=71.7
Q ss_pred ccccc-cccccccccc-----cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCcccccccccc
Q 040111 29 DYKIQ-ESTLHLGWRA-----DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWF 102 (133)
Q Consensus 29 ~ygI~-~stl~L~~~~-----i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~ 102 (133)
-|.+. -+++|+.++. ++||+.+|+++.++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I 88 (103)
T cd01802 9 FFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNI 88 (103)
T ss_pred ccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCC
Confidence 35566 6788887776 99999999999999999999999999999999999999999999999999999999998
Q ss_pred EEeEEE
Q 040111 103 VVVGVI 108 (133)
Q Consensus 103 ~~~~~~ 108 (133)
...+.+
T Consensus 89 ~~~stL 94 (103)
T cd01802 89 SEGCTL 94 (103)
T ss_pred CCCCEE
Confidence 655543
No 2
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.71 E-value=4.8e-18 Score=108.26 Aligned_cols=67 Identities=13% Similarity=0.088 Sum_probs=62.4
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEE
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIF 109 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~ 109 (133)
.|+||+.+|+++.++|++++||++||++|++++|+|+++|+|+|+|++|+|+.+|++|++.+.+.+.
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~ 68 (74)
T cd01807 2 FLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLN 68 (74)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEE
Confidence 3789999999999999999999999999999999999999999999999999999999997666543
No 3
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.71 E-value=6.6e-18 Score=107.66 Aligned_cols=66 Identities=14% Similarity=0.099 Sum_probs=61.5
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIF 109 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~ 109 (133)
|+||++.|+++++++++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+...+.
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~ 66 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVF 66 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEE
Confidence 689999999999999999999999999999999999999999999999999999999996555443
No 4
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.69 E-value=1.4e-17 Score=107.54 Aligned_cols=68 Identities=12% Similarity=0.068 Sum_probs=62.3
Q ss_pred ccccCCCCCCC-ceee-ccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEEe
Q 040111 43 ADFCKNPDPQN-ITLE-VESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIFC 110 (133)
Q Consensus 43 ~i~Vk~~~g~~-~~l~-V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~~ 110 (133)
+|+||+.+|+. +.++ +++++||+++|++|++++|+|+++|+|+|+|+.|+|+.+|++|++...++|.+
T Consensus 2 ~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l 71 (78)
T cd01797 2 WIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQL 71 (78)
T ss_pred EEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEE
Confidence 47899999997 6885 89999999999999999999999999999999999999999999987776654
No 5
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.69 E-value=1.4e-17 Score=104.91 Aligned_cols=67 Identities=9% Similarity=0.151 Sum_probs=62.6
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEEe
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIFC 110 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~~ 110 (133)
|+||+++|+++.+++++++||+++|++|+++.|+|+++|+|+|+|++|+|+.+|++|++...+.+..
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l 67 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHA 67 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEE
Confidence 5789999999999999999999999999999999999999999999999999999999987766543
No 6
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.69 E-value=1.7e-17 Score=105.05 Aligned_cols=65 Identities=15% Similarity=0.107 Sum_probs=59.8
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVI 108 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~ 108 (133)
+.||.++|+++++++++++||+++|++|++++|+|+++|+|+|+|++|+|+.+|++|++....+|
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv 65 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVV 65 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEE
Confidence 35789999999999999999999999999999999999999999999999999999998654444
No 7
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.67 E-value=5.2e-17 Score=103.62 Aligned_cols=66 Identities=14% Similarity=0.078 Sum_probs=61.6
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIF 109 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~ 109 (133)
|+|++..|+.+.+++++++||++||++|+++.|+|+++|||+|+|+.|+|+.+|++|++.+.+.|.
T Consensus 4 i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~ 69 (73)
T cd01791 4 VVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLE 69 (73)
T ss_pred EEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEE
Confidence 788999999999999999999999999999999999999999999999999999999997666553
No 8
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.66 E-value=4.2e-17 Score=103.35 Aligned_cols=68 Identities=12% Similarity=0.128 Sum_probs=62.1
Q ss_pred cccCCC-CCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCcc-ccccccccEEeEEEEeC
Q 040111 44 DFCKNP-DPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFE-EVLSFFWFVVVGVIFCG 111 (133)
Q Consensus 44 i~Vk~~-~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~-~tL~dy~~~~~~~~~~~ 111 (133)
++|++. +|+++.+++++++||+++|++|++++|+|+++|+|+|+|++|+|+ .+|++|++.+..+++.+
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 468888 899999999999999999999999999999999999999999997 68999999887776653
No 9
>PTZ00044 ubiquitin; Provisional
Probab=99.65 E-value=7.7e-17 Score=102.81 Aligned_cols=64 Identities=17% Similarity=0.081 Sum_probs=60.3
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeE
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVG 106 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~ 106 (133)
+|+||+++|+++++++++++||+++|++|++++|+|+++|+|+|+|+.|+|+.+|++|++....
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~ 65 (76)
T PTZ00044 2 QILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGS 65 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCC
Confidence 3789999999999999999999999999999999999999999999999999999999985444
No 10
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.65 E-value=1e-16 Score=102.19 Aligned_cols=63 Identities=19% Similarity=0.130 Sum_probs=56.9
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEE
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGV 107 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~ 107 (133)
+|+||+. ++++++|++++||+++|++|++++|+|+++|+|+|+|++|+|+.+|++|++.+.+.
T Consensus 2 qi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~t 64 (74)
T cd01793 2 QLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCT 64 (74)
T ss_pred EEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCE
Confidence 3678873 67899999999999999999999999999999999999999999999999955443
No 11
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.62 E-value=3e-16 Score=100.23 Aligned_cols=67 Identities=19% Similarity=0.243 Sum_probs=62.1
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcCC--CCCceEEEeCCcccCccccccccccEEeEEEE
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRI--PPPAEADLLKFPFFFFEEVLSFFWFVVVGVIF 109 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gI--p~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~ 109 (133)
.++|++.+|+.+.+++++++||++||++|++++|+ |+++|+|+|+|+.|+|+.+|++|++...+.++
T Consensus 2 ~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~ 70 (77)
T cd01805 2 KITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVV 70 (77)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEE
Confidence 37899999999999999999999999999999999 99999999999999999999999998766444
No 12
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.61 E-value=3.7e-16 Score=97.75 Aligned_cols=64 Identities=25% Similarity=0.275 Sum_probs=59.6
Q ss_pred CCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEEe
Q 040111 47 KNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIFC 110 (133)
Q Consensus 47 k~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~~ 110 (133)
|+++|+.+.+++++++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|++.+.++|++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l 64 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHL 64 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEE
Confidence 4678899999999999999999999999999999999999999999999999999988776654
No 13
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=4.3e-16 Score=110.96 Aligned_cols=72 Identities=38% Similarity=0.355 Sum_probs=64.7
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEe-----EEEEeCcee
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVV-----GVIFCGCRV 114 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~-----~~~~~~~~~ 114 (133)
+|||+++.++++..++++++||..+|++|++.+|||+++|||+|+|++|+|+.+||||+|... .+...||+.
T Consensus 2 ~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~k 78 (156)
T KOG0004|consen 2 QIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAK 78 (156)
T ss_pred ccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCcc
Confidence 489999999999999999999999999999999999999999999999999999999999443 355566654
No 14
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.60 E-value=6.7e-16 Score=99.50 Aligned_cols=65 Identities=14% Similarity=0.084 Sum_probs=60.0
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEE
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVI 108 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~ 108 (133)
.|+|++..|+.+.+++++++||++||++|+++.|+|+++|+|+|+|+.|+|+ +|++|++.+.+++
T Consensus 3 ~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i 67 (78)
T cd01804 3 NLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKL 67 (78)
T ss_pred EEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEE
Confidence 4789999999999999999999999999999999999999999999999999 9999999665544
No 15
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.59 E-value=9.2e-16 Score=97.36 Aligned_cols=66 Identities=15% Similarity=0.250 Sum_probs=61.3
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIF 109 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~ 109 (133)
|+|++.+|+++.+++++++||++||++|+++.|+|++.|+|+|+|+.|.|+.+|++|++...+++.
T Consensus 3 i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~ 68 (76)
T cd01806 3 IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLH 68 (76)
T ss_pred EEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEE
Confidence 789999999999999999999999999999999999999999999999999999999987655443
No 16
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.59 E-value=6.8e-16 Score=99.82 Aligned_cols=66 Identities=14% Similarity=-0.025 Sum_probs=61.3
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEE--EeCCcccCccccccccccEEeEEE
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEAD--LLKFPFFFFEEVLSFFWFVVVGVI 108 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L--~~~gk~L~d~~tL~dy~~~~~~~~ 108 (133)
.++|++.+|+++.+++++++||++||++|+++.|+|+++|+| +|+|+.|+|+.+|++|++.+.+++
T Consensus 4 ~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l 71 (80)
T cd01792 4 DLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTV 71 (80)
T ss_pred EEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEE
Confidence 478999999999999999999999999999999999999999 899999999999999999765544
No 17
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.59 E-value=7.9e-16 Score=97.66 Aligned_cols=66 Identities=39% Similarity=0.406 Sum_probs=61.1
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEE
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVI 108 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~ 108 (133)
+|+|++.+|+.+.+++++++||++||++|++++|+|++.|+|+|+|+.|+|+.+|++|++...+.+
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i 67 (76)
T cd01803 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 67 (76)
T ss_pred EEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEE
Confidence 378999999999999999999999999999999999999999999999999999999998655443
No 18
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.58 E-value=9.9e-16 Score=96.26 Aligned_cols=66 Identities=24% Similarity=0.140 Sum_probs=61.7
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIF 109 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~ 109 (133)
++||+++|+++.+++++++||+++|++|++.+|+|++.|+|+|+|+.|+|+.+|++|++...+.+.
T Consensus 3 i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~ 68 (72)
T cd01809 3 IKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIH 68 (72)
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEE
Confidence 789999999999999999999999999999999999999999999999999999999997666543
No 19
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=5e-16 Score=94.20 Aligned_cols=63 Identities=14% Similarity=0.269 Sum_probs=59.1
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVG 106 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~ 106 (133)
|.|++++|+.+.++++|+++|..+|.+|++++||||.+|||+|+|++|.|+.+-++|++--.+
T Consensus 3 iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GS 65 (70)
T KOG0005|consen 3 IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGS 65 (70)
T ss_pred eeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccce
Confidence 678999999999999999999999999999999999999999999999999999999875333
No 20
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=1.4e-16 Score=107.25 Aligned_cols=64 Identities=41% Similarity=0.408 Sum_probs=60.4
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeE
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVG 106 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~ 106 (133)
.++++++.|+++.++++|++||.++|++|++++||||++|+|+|+|++|+|+.||++|+|...+
T Consensus 2 ~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~ 65 (128)
T KOG0003|consen 2 QIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 65 (128)
T ss_pred cEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchh
Confidence 4788999999999999999999999999999999999999999999999999999999986554
No 21
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.57 E-value=1.5e-15 Score=95.93 Aligned_cols=64 Identities=9% Similarity=0.051 Sum_probs=58.8
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVI 108 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~ 108 (133)
|+||+.+|+ ..+++++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|++.+.+++
T Consensus 3 i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl 66 (71)
T cd01808 3 VTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTV 66 (71)
T ss_pred EEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEE
Confidence 678899887 5899999999999999999999999999999999999999999999999766544
No 22
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.53 E-value=6.3e-15 Score=94.38 Aligned_cols=61 Identities=16% Similarity=0.233 Sum_probs=56.1
Q ss_pred CCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEE
Q 040111 49 PDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIF 109 (133)
Q Consensus 49 ~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~ 109 (133)
++|+++++++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+...+.
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~ 65 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIH 65 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEE
Confidence 4688999999999999999999999999999999999999999999999999986655443
No 23
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.50 E-value=1.2e-14 Score=91.25 Aligned_cols=64 Identities=14% Similarity=0.016 Sum_probs=58.0
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVI 108 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~ 108 (133)
|.||+. |+.+.+++++++||++||++|++.+|+|++.|+|+|+|+.|.|+.+|++|++.....+
T Consensus 3 i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l 66 (71)
T cd01812 3 VRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKV 66 (71)
T ss_pred EEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEE
Confidence 567776 8889999999999999999999999999999999999999999999999998755433
No 24
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.49 E-value=1.8e-14 Score=93.03 Aligned_cols=58 Identities=10% Similarity=-0.041 Sum_probs=51.9
Q ss_pred cccCCCCCCC--ceeeccccCcHHHHHHHhhhhcC--CCCCceEEEeCCcccCccccccccc
Q 040111 44 DFCKNPDPQN--ITLEVESSDTIDNVKAKIQDKKR--IPPPAEADLLKFPFFFFEEVLSFFW 101 (133)
Q Consensus 44 i~Vk~~~g~~--~~l~V~~~~tV~~LK~~I~~~~g--Ip~~~q~L~~~gk~L~d~~tL~dy~ 101 (133)
++||+++++. +.+++++++||++||++|++..+ .|+++|||+|+||.|+|+.+|++|.
T Consensus 4 l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~ 65 (79)
T cd01790 4 LLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVL 65 (79)
T ss_pred EEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHh
Confidence 6899999998 55566899999999999999875 5689999999999999999999994
No 25
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.46 E-value=4.3e-14 Score=90.29 Aligned_cols=59 Identities=19% Similarity=0.012 Sum_probs=54.1
Q ss_pred CCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEe---CCcccCccccccccccEEeEEE
Q 040111 50 DPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLL---KFPFFFFEEVLSFFWFVVVGVI 108 (133)
Q Consensus 50 ~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~---~gk~L~d~~tL~dy~~~~~~~~ 108 (133)
.|+.+.+++++++||++||++|++.+|+||++|+|+| +|+.+.|+.+|++|++.....|
T Consensus 8 ~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i 69 (74)
T cd01813 8 GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKI 69 (74)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEE
Confidence 5778899999999999999999999999999999996 9999999999999998765533
No 26
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.44 E-value=5.1e-14 Score=86.01 Aligned_cols=60 Identities=28% Similarity=0.257 Sum_probs=56.1
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVV 104 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~ 104 (133)
|+||+.+ +.+.+++++++||++||++|++.+|+|++.|+|+|+|+.|.|+.+|++|++..
T Consensus 3 i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~ 62 (64)
T smart00213 3 LTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQD 62 (64)
T ss_pred EEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcC
Confidence 6788887 68899999999999999999999999999999999999999999999998864
No 27
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.43 E-value=8.8e-14 Score=89.12 Aligned_cols=58 Identities=19% Similarity=0.101 Sum_probs=52.5
Q ss_pred CCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccC-ccccccccccEEeE
Q 040111 48 NPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFF-FEEVLSFFWFVVVG 106 (133)
Q Consensus 48 ~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~-d~~tL~dy~~~~~~ 106 (133)
...|.++.+++++++||++||++|++++|+||++|+| |+|+.|. |+.+|++|++...|
T Consensus 9 ~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g 67 (75)
T cd01799 9 QSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNG 67 (75)
T ss_pred ccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCC
Confidence 4567889999999999999999999999999999999 9999996 66899999997554
No 28
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.41 E-value=1.3e-13 Score=88.08 Aligned_cols=50 Identities=14% Similarity=0.110 Sum_probs=44.7
Q ss_pred ccCcHHHHHHHhhhhc--CCC-CCceEEEeCCcccCccccccccccEEeEEEE
Q 040111 60 SSDTIDNVKAKIQDKK--RIP-PPAEADLLKFPFFFFEEVLSFFWFVVVGVIF 109 (133)
Q Consensus 60 ~~~tV~~LK~~I~~~~--gIp-~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~ 109 (133)
.++||.+||++|+++. |++ +++|||+|+|+.|+|++||++|+|...+++.
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlh 71 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIH 71 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEE
Confidence 5799999999999995 575 9999999999999999999999998766554
No 29
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.38 E-value=2.3e-13 Score=110.42 Aligned_cols=65 Identities=12% Similarity=0.163 Sum_probs=61.2
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcC---CCCCceEEEeCCcccCccccccccccEEeEE
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKR---IPPPAEADLLKFPFFFFEEVLSFFWFVVVGV 107 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~g---Ip~~~q~L~~~gk~L~d~~tL~dy~~~~~~~ 107 (133)
+|+||++.|+++.++|++++||.+||++|++..| +|+++|+|+|+|+.|+|+.+|++|+|....+
T Consensus 2 kItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~ 69 (378)
T TIGR00601 2 TLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDF 69 (378)
T ss_pred EEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCE
Confidence 4789999999999999999999999999999998 9999999999999999999999999976653
No 30
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.32 E-value=1.6e-12 Score=85.33 Aligned_cols=65 Identities=8% Similarity=-0.040 Sum_probs=61.1
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVI 108 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~ 108 (133)
|+|++.+|+.+.++|.++++++.||.+++++.|+|+++|+|+|+|+.|+++.|+++|++....+|
T Consensus 14 I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I 78 (87)
T cd01763 14 LKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEI 78 (87)
T ss_pred EEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEE
Confidence 88999999999999999999999999999999999999999999999999999999998665544
No 31
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.30 E-value=2.8e-12 Score=79.20 Aligned_cols=64 Identities=23% Similarity=0.277 Sum_probs=58.3
Q ss_pred cCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEE
Q 040111 46 CKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIF 109 (133)
Q Consensus 46 Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~ 109 (133)
|+..+|+.+.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|++...+.|+
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~ 65 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLH 65 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEE
Confidence 5666788999999999999999999999999999999999999999999999999997666544
No 32
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.25 E-value=1.8e-12 Score=82.47 Aligned_cols=43 Identities=33% Similarity=0.407 Sum_probs=39.8
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|||+++|+|+|+|++|+|+.+|++|||. ++++|+.++.
T Consensus 28 i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l 71 (74)
T cd01793 28 VAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRL 71 (74)
T ss_pred HHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEec
Confidence 467899999999999999999999999999999 9999987763
No 33
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.23 E-value=1.9e-12 Score=83.49 Aligned_cols=43 Identities=37% Similarity=0.600 Sum_probs=40.1
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|||+++|+|+|+|++|+|+.+|++|||. +++|+|++++
T Consensus 32 i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~ 75 (78)
T cd01797 32 IQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQ 75 (78)
T ss_pred HHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEec
Confidence 457789999999999999999999999999999 9999998875
No 34
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.23 E-value=6.4e-12 Score=99.13 Aligned_cols=68 Identities=22% Similarity=0.186 Sum_probs=64.1
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcC--CCCCceEEEeCCcccCccccccccccEEeEEEEe
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKR--IPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIFC 110 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~g--Ip~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~~ 110 (133)
.++||++.++++.+++.|++||.++|.+|+...| .|+++|+|+|+||.|.|+.++.+|++....+|++
T Consensus 2 ~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVv 71 (340)
T KOG0011|consen 2 KLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVV 71 (340)
T ss_pred eeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEE
Confidence 3789999999999999999999999999999999 9999999999999999999999999988886654
No 35
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.22 E-value=2.1e-12 Score=82.03 Aligned_cols=43 Identities=37% Similarity=0.644 Sum_probs=39.8
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|+|+++|+|+|+|++|+|+.+|++|||. +++++|++++
T Consensus 30 i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 30 VSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred HHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 467889999999999999999999999999999 9999998764
No 36
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.22 E-value=9.5e-12 Score=84.83 Aligned_cols=58 Identities=10% Similarity=-0.016 Sum_probs=49.6
Q ss_pred cccCCCCCCCc-eeeccccCcHHHHHHHhhhh-----cCCC--CCceEEEeCCcccCccccccccc
Q 040111 44 DFCKNPDPQNI-TLEVESSDTIDNVKAKIQDK-----KRIP--PPAEADLLKFPFFFFEEVLSFFW 101 (133)
Q Consensus 44 i~Vk~~~g~~~-~l~V~~~~tV~~LK~~I~~~-----~gIp--~~~q~L~~~gk~L~d~~tL~dy~ 101 (133)
|.+|..+|.-+ +..+++++||++||++|++. +|+| +++|+|+|+||.|+|++||++|+
T Consensus 7 ~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~ 72 (113)
T cd01814 7 IKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECR 72 (113)
T ss_pred EEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhC
Confidence 55677777543 66788999999999999944 4566 99999999999999999999999
No 37
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=4.8e-12 Score=90.35 Aligned_cols=43 Identities=81% Similarity=1.161 Sum_probs=41.4
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
||.++|||+++|||||.|++|+|..+|+||+|+ .+||||+++.
T Consensus 30 iq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l 73 (156)
T KOG0004|consen 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (156)
T ss_pred hhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEe
Confidence 688999999999999999999999999999999 9999999886
No 38
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.16 E-value=5.9e-12 Score=79.55 Aligned_cols=41 Identities=34% Similarity=0.498 Sum_probs=38.4
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGW 41 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~ 41 (133)
|++++|+|+++|+|+|+|++|+|+.+|.+|+|. ++++||++
T Consensus 28 I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 28 LQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred HHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 467889999999999999999999999999999 99999875
No 39
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.16 E-value=5.7e-12 Score=80.54 Aligned_cols=40 Identities=35% Similarity=0.558 Sum_probs=35.5
Q ss_pred Ccc--cCCC-CCCeEEEeCCEECCCCCCccccccc-cccccccc
Q 040111 2 EDK--EGIP-PGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGW 41 (133)
Q Consensus 2 ~~~--~gip-~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~ 41 (133)
+++ +|+| +++|||||+||+|+|+.||++|||. +++|||+.
T Consensus 31 ~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 31 AAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred HHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 445 4675 9999999999999999999999999 99999864
No 40
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.14 E-value=6.6e-11 Score=78.98 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=51.7
Q ss_pred CCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCc-cccccccccEEeEEEEe
Q 040111 52 QNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFF-EEVLSFFWFVVVGVIFC 110 (133)
Q Consensus 52 ~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d-~~tL~dy~~~~~~~~~~ 110 (133)
...+++|++++||.+||.+|.+..++||.+|+|++.|+.|.| .+||++|++..-++++.
T Consensus 15 ~~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~L 74 (107)
T cd01795 15 GEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILL 74 (107)
T ss_pred CCceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEE
Confidence 356788999999999999999999999999999999999997 57999999875555543
No 41
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.13 E-value=1.2e-11 Score=77.75 Aligned_cols=42 Identities=38% Similarity=0.711 Sum_probs=38.8
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-ccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWR 42 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~ 42 (133)
|++++|+|+++|+|+|+|++|+|+.+|++|||. ++++||+.|
T Consensus 28 i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 28 VAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred HHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 467889999999999999999999999999999 999998754
No 42
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=7.1e-12 Score=76.13 Aligned_cols=40 Identities=58% Similarity=0.918 Sum_probs=37.9
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-ccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLG 40 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~ 40 (133)
|++++|||+.+|||+|.||++.|+.|-++|++. ||++|++
T Consensus 30 vEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 30 VEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred hhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 578999999999999999999999999999999 9999974
No 43
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.10 E-value=2.2e-11 Score=77.38 Aligned_cols=43 Identities=23% Similarity=0.483 Sum_probs=39.2
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|||+++|+|+|+|++|+|+.+|++|||. +++++|.++.
T Consensus 28 I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l 71 (74)
T cd01810 28 VSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRL 71 (74)
T ss_pred HHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEc
Confidence 467789999999999999999999999999999 9999987653
No 44
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.07 E-value=3.6e-11 Score=81.37 Aligned_cols=42 Identities=43% Similarity=0.571 Sum_probs=39.2
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-ccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWR 42 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~ 42 (133)
|++++|||+++|+|+|+|++|+|+.+|++|+|. +++|||.++
T Consensus 57 I~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~~ 99 (103)
T cd01802 57 IQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVLA 99 (103)
T ss_pred HHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 467899999999999999999999999999999 999998765
No 45
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=9.5e-12 Score=83.91 Aligned_cols=43 Identities=84% Similarity=1.171 Sum_probs=39.9
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|||+++|+|+|+|++|+|..|+++|||+ .+|||+..+.
T Consensus 30 i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL 73 (128)
T KOG0003|consen 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (128)
T ss_pred hccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHH
Confidence 678999999999999999999999999999999 9999976554
No 46
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.04 E-value=3.7e-11 Score=76.55 Aligned_cols=41 Identities=24% Similarity=0.274 Sum_probs=37.4
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGW 41 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~ 41 (133)
|+++.|+|+++|||+|+|++|+|+.+|++|||. ++++||..
T Consensus 31 I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 31 IAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred HHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 356779999999999999999999999999999 99999853
No 47
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.02 E-value=5.6e-11 Score=74.90 Aligned_cols=42 Identities=36% Similarity=0.376 Sum_probs=38.3
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-ccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWR 42 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~ 42 (133)
|++++|+|+++|+|+|.|++|+|+.+|++|||. ++++||+++
T Consensus 29 I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 29 VSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred HHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 356779999999999999999999999999999 999998764
No 48
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.02 E-value=8.2e-11 Score=73.32 Aligned_cols=43 Identities=51% Similarity=0.886 Sum_probs=39.0
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++..++|+++|+|+|+|++|+|+.+|.+|||. +++|+|.+++
T Consensus 25 i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 25 IAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp HHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred cccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 356789999999999999999999999999999 9999987763
No 49
>PTZ00044 ubiquitin; Provisional
Probab=99.00 E-value=7.6e-11 Score=74.92 Aligned_cols=42 Identities=43% Similarity=0.700 Sum_probs=38.9
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-ccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWR 42 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~ 42 (133)
|++++|+|+++|+|+|+|++|+|+.+|++|++. ++++|+.++
T Consensus 30 i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (76)
T PTZ00044 30 LQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQ 72 (76)
T ss_pred HHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEE
Confidence 467889999999999999999999999999999 999998765
No 50
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.00 E-value=3.2e-10 Score=93.56 Aligned_cols=60 Identities=15% Similarity=0.156 Sum_probs=56.7
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccE
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFV 103 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~ 103 (133)
.|.||+.++ ...+.|..+.||.+||+.|+.+.++++++++|+|+||.|+|+.+|..|+|.
T Consensus 17 rV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~ 76 (493)
T KOG0010|consen 17 RVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQ 76 (493)
T ss_pred EEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCC
Confidence 388999988 778999999999999999999999999999999999999999999999984
No 51
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=98.95 E-value=1.5e-10 Score=73.91 Aligned_cols=43 Identities=28% Similarity=0.631 Sum_probs=39.1
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|+..+|||+++|+|+|+|+.|+|+.+|++|+|. +++|+|+++.
T Consensus 27 i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~ 70 (76)
T cd01800 27 IHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKE 70 (76)
T ss_pred HHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEec
Confidence 456789999999999999999999999999999 9999987653
No 52
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=98.93 E-value=2e-10 Score=72.53 Aligned_cols=40 Identities=38% Similarity=0.606 Sum_probs=36.3
Q ss_pred CCcccCCCCCCeEEEeCCEECCCC-CCccccccc-ccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDG-RTLADYKIQ-ESTLHLG 40 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~-~tL~~ygI~-~stl~L~ 40 (133)
|++++|+|+++|+|+|+|++|+|+ .+|++|||. +++++|.
T Consensus 29 I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 29 CEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred HHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 467899999999999999999987 689999999 9999874
No 53
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=98.93 E-value=2.7e-10 Score=72.44 Aligned_cols=43 Identities=40% Similarity=0.667 Sum_probs=38.6
Q ss_pred CCcccCC--CCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGI--PPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gi--p~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|+ |+++|+|+|+|++|+|+.+|++|||. +++++++++.
T Consensus 30 i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 30 IEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred HHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence 3567888 99999999999999999999999999 9999987653
No 54
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=98.93 E-value=2.3e-10 Score=71.62 Aligned_cols=42 Identities=45% Similarity=0.764 Sum_probs=38.2
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-ccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWR 42 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~ 42 (133)
|++.+|+|+++|+|+|+|++|+|+.+|++||+. ++++|+..+
T Consensus 30 i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 30 IAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred HHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 356789999999999999999999999999999 999998754
No 55
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=98.93 E-value=3.7e-10 Score=71.35 Aligned_cols=42 Identities=57% Similarity=0.933 Sum_probs=38.9
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-ccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWR 42 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~ 42 (133)
|+++.|+|+++|+|+|+|+.|+|+.+|++|++. +++||+.++
T Consensus 30 i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~ 72 (76)
T cd01806 30 VEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLA 72 (76)
T ss_pred HhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEE
Confidence 467789999999999999999999999999999 999998765
No 56
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=98.89 E-value=3.6e-10 Score=72.67 Aligned_cols=42 Identities=21% Similarity=0.277 Sum_probs=37.7
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|+++.++|+++|+|+|.|++|+|+ +|++|||. +++|+|+...
T Consensus 31 I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~ 73 (78)
T cd01804 31 ISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTV 73 (78)
T ss_pred HHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeec
Confidence 456779999999999999999999 99999999 9999987653
No 57
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=98.88 E-value=9.7e-10 Score=75.02 Aligned_cols=51 Identities=25% Similarity=0.345 Sum_probs=42.6
Q ss_pred cccCCC--CCCeEEEeCCEECCCCCCccccc------cc-cccccccccccccCCCCCCC
Q 040111 3 DKEGIP--PGQQRSIFAGKQLEDGRTLADYK------IQ-ESTLHLGWRADFCKNPDPQN 53 (133)
Q Consensus 3 ~~~gip--~~~Q~Li~~gk~L~D~~tL~~yg------I~-~stl~L~~~~i~Vk~~~g~~ 53 (133)
.++++| +++|+|||+||+|+|+.||++|+ +. .+|+|++++.-.-+...++.
T Consensus 42 ~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~TmHvvlr~~~~~~~~~k~ 101 (113)
T cd01814 42 DKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITMHVVVQPPLADKKTEKK 101 (113)
T ss_pred ccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEEEEEecCCCCCcccccc
Confidence 467888 99999999999999999999999 66 79999998886555544443
No 58
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=98.87 E-value=5.5e-10 Score=70.57 Aligned_cols=42 Identities=83% Similarity=1.199 Sum_probs=38.8
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-ccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWR 42 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~ 42 (133)
|++++|+|+++|+|+|+|+.|+|+.+|++||+. ++++++.++
T Consensus 30 i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (76)
T cd01803 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (76)
T ss_pred HHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence 467789999999999999999999999999999 999998765
No 59
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=98.84 E-value=4.2e-10 Score=72.59 Aligned_cols=43 Identities=33% Similarity=0.356 Sum_probs=39.2
Q ss_pred CCcccCCCCCCeEE--EeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRS--IFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~L--i~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|+|+++|+| +|.|+.|+|+.+|++|||. +++|+|++++
T Consensus 32 I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 32 IAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred HHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence 45678999999999 8999999999999999999 9999988764
No 60
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.84 E-value=3.3e-09 Score=65.03 Aligned_cols=63 Identities=35% Similarity=0.306 Sum_probs=57.4
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVG 106 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~ 106 (133)
+++++..|+.+.+++.+..+|..+|.+|+...|+|+++|++.++|+.|+|+.++++|+|...+
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~ 64 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGS 64 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCC
Confidence 356678899999999999999999999999999999999999999999999999999975444
No 61
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.79 E-value=2.4e-09 Score=67.30 Aligned_cols=63 Identities=16% Similarity=0.113 Sum_probs=56.3
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCC-CceEEEeCCcccCccccccccccEEeE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPP-PAEADLLKFPFFFFEEVLSFFWFVVVG 106 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~-~~q~L~~~gk~L~d~~tL~dy~~~~~~ 106 (133)
|+|+..+|+.+.+.|.+++++..|++..+++.|+|+ +..+|+|.|+.|.++.|+++|++....
T Consensus 3 i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d 66 (72)
T PF11976_consen 3 IKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGD 66 (72)
T ss_dssp EEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTE
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCC
Confidence 577888899999999999999999999999999999 999999999999999999999985433
No 62
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=98.74 E-value=2.1e-09 Score=67.12 Aligned_cols=41 Identities=29% Similarity=0.413 Sum_probs=37.6
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGW 41 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~ 41 (133)
|++.+|+|+++|+|+|+|+.|+|+.+|++|||. +++|+++.
T Consensus 29 i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 29 LAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred HHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 467789999999999999999999999999999 99998764
No 63
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=98.71 E-value=2.9e-09 Score=68.76 Aligned_cols=35 Identities=31% Similarity=0.295 Sum_probs=32.1
Q ss_pred CCCCCeEEEeCCEECCCCCCccccc--cc-cccccccc
Q 040111 7 IPPGQQRSIFAGKQLEDGRTLADYK--IQ-ESTLHLGW 41 (133)
Q Consensus 7 ip~~~Q~Li~~gk~L~D~~tL~~yg--I~-~stl~L~~ 41 (133)
.|+++|||||+||+|+|+.||++|+ +. +.++||+.
T Consensus 41 ~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 41 PLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred CChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 5579999999999999999999996 99 99999864
No 64
>PLN02560 enoyl-CoA reductase
Probab=98.66 E-value=2.8e-08 Score=79.01 Aligned_cols=67 Identities=19% Similarity=0.143 Sum_probs=56.5
Q ss_pred cccCCCCCCCc---eeeccccCcHHHHHHHhhhhcCC-CCCceEEEeC---C----cccCccccccccccEEeEEEEe
Q 040111 44 DFCKNPDPQNI---TLEVESSDTIDNVKAKIQDKKRI-PPPAEADLLK---F----PFFFFEEVLSFFWFVVVGVIFC 110 (133)
Q Consensus 44 i~Vk~~~g~~~---~l~V~~~~tV~~LK~~I~~~~gI-p~~~q~L~~~---g----k~L~d~~tL~dy~~~~~~~~~~ 110 (133)
|.|+..+|+.+ ++++++++||++||++|+++.++ ++++|||.+. | +.|.|+++|+||++...+.++.
T Consensus 3 I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 3 VTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred EEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 56777778776 79999999999999999999986 8999999973 4 4889999999999976665554
No 65
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.65 E-value=4.8e-08 Score=63.67 Aligned_cols=56 Identities=13% Similarity=-0.049 Sum_probs=46.7
Q ss_pred CceeeccccCcHHHHHHHhhhhcCCCCCceEEE-eCCc-----cc-CccccccccccEEeEEE
Q 040111 53 NITLEVESSDTIDNVKAKIQDKKRIPPPAEADL-LKFP-----FF-FFEEVLSFFWFVVVGVI 108 (133)
Q Consensus 53 ~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~-~~gk-----~L-~d~~tL~dy~~~~~~~~ 108 (133)
.....++++.||.+||++++..+|+||+.|+|. |.|+ .| .|+++|++|++.....|
T Consensus 14 ~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~I 76 (84)
T cd01789 14 SFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRI 76 (84)
T ss_pred eeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEE
Confidence 345569999999999999999999999999995 8888 46 56789999998655443
No 66
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=98.64 E-value=1.1e-08 Score=66.97 Aligned_cols=42 Identities=17% Similarity=0.381 Sum_probs=38.7
Q ss_pred CcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 2 EDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 2 ~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
+++.|+|+++|+|+|+|+.|+|+.|+.+|++. +++|++.+++
T Consensus 42 ~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l 84 (87)
T cd01763 42 CQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQ 84 (87)
T ss_pred HHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEec
Confidence 46789999999999999999999999999999 9999987654
No 67
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.64 E-value=2e-08 Score=68.53 Aligned_cols=52 Identities=15% Similarity=0.105 Sum_probs=47.9
Q ss_pred CceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEE
Q 040111 53 NITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVV 104 (133)
Q Consensus 53 ~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~ 104 (133)
++-++..+++||.+||++|+.....||++|+|+-.+..|+|++||+||++++
T Consensus 13 TiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~ 64 (119)
T cd01788 13 TIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTS 64 (119)
T ss_pred EEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccc
Confidence 4667899999999999999999999999999997888899999999999954
No 68
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=98.63 E-value=6e-09 Score=66.43 Aligned_cols=41 Identities=22% Similarity=0.363 Sum_probs=37.2
Q ss_pred CCcccCCCCCCeEEEe---CCEECCCCCCccccccc-cccccccc
Q 040111 1 IEDKEGIPPGQQRSIF---AGKQLEDGRTLADYKIQ-ESTLHLGW 41 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~---~gk~L~D~~tL~~ygI~-~stl~L~~ 41 (133)
|++.+|+|+++|+|+| .|++|+|+.+|++|+|. +++++|+.
T Consensus 29 i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmG 73 (74)
T cd01813 29 IKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMG 73 (74)
T ss_pred HHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEe
Confidence 4677899999999996 89999999999999999 99998864
No 69
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=98.51 E-value=1.9e-08 Score=64.32 Aligned_cols=40 Identities=30% Similarity=0.343 Sum_probs=34.6
Q ss_pred CCcccCCCCCCeEEEeCCEECC-CCCCccccccc--cccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLE-DGRTLADYKIQ--ESTLHLGW 41 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~-D~~tL~~ygI~--~stl~L~~ 41 (133)
|++++|||+++|+| |.|+.|. |+.+|++||+. |++++|.+
T Consensus 32 I~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 32 VFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred HHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 46789999999999 9999884 77999999998 68998753
No 70
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.50 E-value=8e-08 Score=62.74 Aligned_cols=58 Identities=19% Similarity=0.106 Sum_probs=45.1
Q ss_pred CCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeC----C---ccc-CccccccccccEEeEEEE
Q 040111 52 QNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLK----F---PFF-FFEEVLSFFWFVVVGVIF 109 (133)
Q Consensus 52 ~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~----g---k~L-~d~~tL~dy~~~~~~~~~ 109 (133)
......++++.||.+||.+|+..+|+||+.|+|.+. + ..+ .|+++|++|++.....|.
T Consensus 14 ~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~ 79 (87)
T PF14560_consen 14 RSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIH 79 (87)
T ss_dssp SEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEE
T ss_pred eeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEE
Confidence 456778999999999999999999999999999976 1 123 457899999987655443
No 71
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.48 E-value=4.5e-08 Score=65.49 Aligned_cols=42 Identities=29% Similarity=0.256 Sum_probs=37.2
Q ss_pred CCcccCCCCCCeEEEeCCEECC-CCCCccccccc-ccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLE-DGRTLADYKIQ-ESTLHLGWR 42 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~-D~~tL~~ygI~-~stl~L~~~ 42 (133)
|++++++|+.+|+|+|.|+.|. |..||++|||. +|++.|.++
T Consensus 34 ImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llid 77 (107)
T cd01795 34 IMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKAD 77 (107)
T ss_pred HHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence 5678999999999999999995 56999999999 999997643
No 72
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1e-07 Score=84.45 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=57.6
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCcccccccccc
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWF 102 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~ 102 (133)
+.||+++.++.++.+...+||.++|..|.++.+|+.+.|||+|+|+.|.|++++.+|++
T Consensus 5 v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v 63 (1143)
T KOG4248|consen 5 VLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV 63 (1143)
T ss_pred eeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC
Confidence 78999999999999999999999999999999999999999999999999999999987
No 73
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.39 E-value=6e-08 Score=80.34 Aligned_cols=43 Identities=42% Similarity=0.642 Sum_probs=39.3
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|.++.++|+++|+|||.||+|+|+.||..|||. +.|+||+++.
T Consensus 44 I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~ 87 (493)
T KOG0010|consen 44 IAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKS 87 (493)
T ss_pred HHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEecc
Confidence 356789999999999999999999999999999 9999987665
No 74
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=98.39 E-value=8.7e-08 Score=58.04 Aligned_cols=35 Identities=63% Similarity=0.881 Sum_probs=31.5
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ES 35 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~s 35 (133)
|++++|+|+++|+|+|+|+.|+|+.+|++|||. ++
T Consensus 29 i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 29 IAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred HHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 356789999999999999999999999999998 54
No 75
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.37 E-value=7e-07 Score=57.04 Aligned_cols=52 Identities=12% Similarity=0.015 Sum_probs=44.9
Q ss_pred cccCcHHHHHHHhhhhcC-CCCCceEEE--eCCcccCccccccccccEEeEEEEe
Q 040111 59 ESSDTIDNVKAKIQDKKR-IPPPAEADL--LKFPFFFFEEVLSFFWFVVVGVIFC 110 (133)
Q Consensus 59 ~~~~tV~~LK~~I~~~~g-Ip~~~q~L~--~~gk~L~d~~tL~dy~~~~~~~~~~ 110 (133)
+++.||.+||..|++..+ +++++|+|. +.|+.|.|+.+|++|++...+.++.
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 588999999999999976 689999995 8999999999999999976555554
No 76
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.32 E-value=1.7e-07 Score=76.43 Aligned_cols=44 Identities=32% Similarity=0.512 Sum_probs=39.0
Q ss_pred CcccC---CCCCCeEEEeCCEECCCCCCccccccc-cccccccccccc
Q 040111 2 EDKEG---IPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRADF 45 (133)
Q Consensus 2 ~~~~g---ip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~i~ 45 (133)
++..| +|+++|+|||+||+|+|+.+|++|||. +++|++++++-.
T Consensus 31 ~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~k 78 (378)
T TIGR00601 31 EAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKPK 78 (378)
T ss_pred HHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccCC
Confidence 34556 999999999999999999999999999 999999888743
No 77
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.32 E-value=5.2e-07 Score=61.86 Aligned_cols=56 Identities=14% Similarity=0.042 Sum_probs=44.2
Q ss_pred CCCCC-CceeeccccCcHHHHHHHhhhhc-------CCCCCceEEEeCCcccCccccccccccE
Q 040111 48 NPDPQ-NITLEVESSDTIDNVKAKIQDKK-------RIPPPAEADLLKFPFFFFEEVLSFFWFV 103 (133)
Q Consensus 48 ~~~g~-~~~l~V~~~~tV~~LK~~I~~~~-------gIp~~~q~L~~~gk~L~d~~tL~dy~~~ 103 (133)
..+|. ..++..++++||.+||+.|...+ -..++..||+|.||.|+|+.+|+++++.
T Consensus 9 l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~ 72 (111)
T PF13881_consen 9 LADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLP 72 (111)
T ss_dssp ETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--
T ss_pred EeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCC
Confidence 34777 78889999999999999999775 1357899999999999999999999753
No 78
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.27 E-value=1.2e-06 Score=50.71 Aligned_cols=59 Identities=20% Similarity=0.184 Sum_probs=51.1
Q ss_pred CCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeE
Q 040111 48 NPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVG 106 (133)
Q Consensus 48 ~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~ 106 (133)
..++....+.+.++.|+.++|++|+++.|++++.|.|++.|..+.+...+.+|.+....
T Consensus 4 ~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 62 (69)
T cd00196 4 LNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGD 62 (69)
T ss_pred ecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCC
Confidence 34677788899999999999999999999999999999999999998877777665444
No 79
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=98.23 E-value=2.8e-07 Score=56.48 Aligned_cols=41 Identities=63% Similarity=0.929 Sum_probs=36.6
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGW 41 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~ 41 (133)
|++..|+|+++|+|+|+|+.|+|..+|.+|++. +++|++..
T Consensus 27 i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 27 IAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred HHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 346689999999999999999999999999999 99988753
No 80
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.10 E-value=1.9e-06 Score=52.51 Aligned_cols=42 Identities=74% Similarity=1.013 Sum_probs=37.6
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-ccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWR 42 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~ 42 (133)
|+...|+|.++|++.+.|+.|+|+.++.+|+|. ++++++..+
T Consensus 29 i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~ 71 (75)
T KOG0001|consen 29 IRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLS 71 (75)
T ss_pred HHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEe
Confidence 345679999999999999999999999999999 999997654
No 81
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=97.84 E-value=5.7e-06 Score=65.81 Aligned_cols=39 Identities=31% Similarity=0.520 Sum_probs=36.7
Q ss_pred CCCCCeEEEeCCEECCCCCCccccccc-cccccccccccc
Q 040111 7 IPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRADF 45 (133)
Q Consensus 7 ip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~i~ 45 (133)
.|+++|.|||+||+|.|+.|+.+|+|. +..+.+++++-.
T Consensus 38 yP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~k 77 (340)
T KOG0011|consen 38 YPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKDK 77 (340)
T ss_pred CchhhheeeecceeccCCcchhhhccccCceEEEEEecCc
Confidence 999999999999999999999999999 999998888754
No 82
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=2.4e-05 Score=62.35 Aligned_cols=72 Identities=13% Similarity=0.206 Sum_probs=55.7
Q ss_pred CCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCcccccccccc--EEeEEEEeCceeeeeecccccCc
Q 040111 51 PQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWF--VVVGVIFCGCRVNFWNASLRFDP 125 (133)
Q Consensus 51 g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~--~~~~~~~~~~~~~~~~~~~~~~~ 125 (133)
...++++|+.+.+|.+||+.++.+.|+|+++.+++|+||+|.++.++..+++ +...-|+ ..+=|.|--+|+.
T Consensus 13 ~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~---~lRP~~~~qk~ns 86 (446)
T KOG0006|consen 13 SHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIM---LLRPWRKGQKFNS 86 (446)
T ss_pred cCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhh---ccCcccccccccc
Confidence 3457889999999999999999999999999999999999999999996654 3222222 2444555555544
No 83
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=97.82 E-value=7.4e-06 Score=51.18 Aligned_cols=38 Identities=39% Similarity=0.643 Sum_probs=33.4
Q ss_pred cccCCCC-CCeEEEeCCEECCCCCCccccccc-ccccccc
Q 040111 3 DKEGIPP-GQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLG 40 (133)
Q Consensus 3 ~~~gip~-~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~ 40 (133)
++.|+|+ +..+|+|.|+.|+++.|++++|+. +++|++.
T Consensus 32 ~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 32 EKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVI 71 (72)
T ss_dssp HHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred HhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEE
Confidence 5679999 999999999999999999999999 9999875
No 84
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.75 E-value=8.8e-05 Score=47.18 Aligned_cols=59 Identities=12% Similarity=0.100 Sum_probs=49.6
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeC-----CcccCccccccccccE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLK-----FPFFFFEEVLSFFWFV 103 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~-----gk~L~d~~tL~dy~~~ 103 (133)
+.|+........+.|+|.++|..+|++|....|++- +|||.|. -+.|.+..+|++|+|=
T Consensus 3 VtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiF 66 (80)
T cd01811 3 VTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIF 66 (80)
T ss_pred EEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcce
Confidence 566777777788999999999999999999999887 9999983 2456688999999974
No 85
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=97.69 E-value=1.7e-05 Score=51.30 Aligned_cols=65 Identities=18% Similarity=0.164 Sum_probs=38.8
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeC---Cccc--CccccccccccEEeEEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLK---FPFF--FFEEVLSFFWFVVVGVIF 109 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~---gk~L--~d~~tL~dy~~~~~~~~~ 109 (133)
|.|++.+| ...+++++++|+.+|+++|++..++|++.|.|... ...+ .++++|+++++.-...+|
T Consensus 7 lRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmly 76 (80)
T PF11543_consen 7 LRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLY 76 (80)
T ss_dssp EEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE
T ss_pred EEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEE
Confidence 56777665 45689999999999999999999999999998632 2344 357899999987544444
No 86
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=97.62 E-value=2.2e-05 Score=51.02 Aligned_cols=39 Identities=28% Similarity=0.524 Sum_probs=33.3
Q ss_pred CcccCCCCCCeEE-EeCCE-----EC-CCCCCccccccc-ccccccc
Q 040111 2 EDKEGIPPGQQRS-IFAGK-----QL-EDGRTLADYKIQ-ESTLHLG 40 (133)
Q Consensus 2 ~~~~gip~~~Q~L-i~~gk-----~L-~D~~tL~~ygI~-~stl~L~ 40 (133)
+...|+|++.|+| +|.|+ .| +|+.+|+.||+. +.+||+.
T Consensus 33 ~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 33 ELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred HHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 4568999999999 58888 46 788999999999 9999964
No 87
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.58 E-value=5e-05 Score=50.54 Aligned_cols=53 Identities=15% Similarity=0.082 Sum_probs=46.2
Q ss_pred CCceeeccccCcHHHHHHHhhhhcCCCCCceEEEe-CC-cccCccccccccccEE
Q 040111 52 QNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLL-KF-PFFFFEEVLSFFWFVV 104 (133)
Q Consensus 52 ~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~-~g-k~L~d~~tL~dy~~~~ 104 (133)
.++-++.+++.||.+||.+++....-|++.|+|+- .. ..|+|.++|+|++|+.
T Consensus 12 ttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts 66 (110)
T KOG4495|consen 12 TTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTS 66 (110)
T ss_pred eeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccccc
Confidence 34667889999999999999999999999999986 33 6788999999999864
No 88
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=5.6e-05 Score=67.61 Aligned_cols=43 Identities=30% Similarity=0.598 Sum_probs=39.8
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccccccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~~stl~L~~~~ 43 (133)
|.++.+||.+.|||||+|++|.|++++.+|+|.|-+|||+-|.
T Consensus 32 ~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~vdgk~~hlverp 74 (1143)
T KOG4248|consen 32 IRASVNIPSEKQRLIYQGRVLQDDKKVQEYNVDGKVIHLVERP 74 (1143)
T ss_pred HHHhcccccccceeeecceeeccchhhhhccCCCeEEEeeccC
Confidence 3467899999999999999999999999999999999999886
No 89
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.00027 Score=58.66 Aligned_cols=64 Identities=11% Similarity=0.063 Sum_probs=56.4
Q ss_pred CCCCceee-ccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEEeCce
Q 040111 50 DPQNITLE-VESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIFCGCR 113 (133)
Q Consensus 50 ~g~~~~l~-V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~~~~~ 113 (133)
.|+..+++ ++.++|+..+|+++...+|+||+.|++++.|..+.|+-.+....|.++..++.+|-
T Consensus 11 ~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt 75 (473)
T KOG1872|consen 11 GGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGT 75 (473)
T ss_pred cCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeecc
Confidence 46667776 99999999999999999999999999999999999998888888888887776654
No 90
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=97.34 E-value=0.00033 Score=46.90 Aligned_cols=47 Identities=13% Similarity=0.034 Sum_probs=39.5
Q ss_pred ceeecc--ccCcHHHHHHHhhhhcC--CCCCceEEEeCCcccCcccccccc
Q 040111 54 ITLEVE--SSDTIDNVKAKIQDKKR--IPPPAEADLLKFPFFFFEEVLSFF 100 (133)
Q Consensus 54 ~~l~V~--~~~tV~~LK~~I~~~~g--Ip~~~q~L~~~gk~L~d~~tL~dy 100 (133)
..+++. .+.||..||++|.+..+ ..-..+||+|+|+.|.|+..|+.-
T Consensus 14 l~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 14 LPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred ceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 456666 78999999999999983 667788999999999998877654
No 91
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=97.30 E-value=0.00015 Score=49.73 Aligned_cols=36 Identities=39% Similarity=0.676 Sum_probs=27.1
Q ss_pred CCCCeEEEeCCEECCCCCCccccccc-cc------cccccccc
Q 040111 8 PPGQQRSIFAGKQLEDGRTLADYKIQ-ES------TLHLGWRA 43 (133)
Q Consensus 8 p~~~Q~Li~~gk~L~D~~tL~~ygI~-~s------tl~L~~~~ 43 (133)
.++..||||.||.|+|+.||.++++. +. ++||+++.
T Consensus 47 s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~vmHlvvrp 89 (111)
T PF13881_consen 47 SPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTVMHLVVRP 89 (111)
T ss_dssp SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EEEEEEE-S
T ss_pred ChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEEEEEEecC
Confidence 34679999999999999999999987 44 78877765
No 92
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=97.14 E-value=0.0012 Score=48.02 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=56.0
Q ss_pred cccCCCCC----CCceeeccccCcHHHHHHHhhhhcCCCCCce-EEEe-CCccc--Cccccccccc-------c--EEeE
Q 040111 44 DFCKNPDP----QNITLEVESSDTIDNVKAKIQDKKRIPPPAE-ADLL-KFPFF--FFEEVLSFFW-------F--VVVG 106 (133)
Q Consensus 44 i~Vk~~~g----~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q-~L~~-~gk~L--~d~~tL~dy~-------~--~~~~ 106 (133)
|+|++++| .++.+.+++++||.+|+..|.+..++|+..| .|.+ .++.+ .++.+++++. + ..+.
T Consensus 3 Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~l~ 82 (162)
T PF13019_consen 3 VLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLRLS 82 (162)
T ss_pred EEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEEEE
Confidence 78899988 5778889999999999999999999998884 4555 45555 3455666553 2 3456
Q ss_pred EEEeCceeee
Q 040111 107 VIFCGCRVNF 116 (133)
Q Consensus 107 ~~~~~~~~~~ 116 (133)
+-+|||.+-|
T Consensus 83 ~rl~GGKGGF 92 (162)
T PF13019_consen 83 LRLRGGKGGF 92 (162)
T ss_pred EeccCCCccH
Confidence 7789998877
No 93
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=96.87 E-value=0.00058 Score=43.41 Aligned_cols=34 Identities=29% Similarity=0.337 Sum_probs=29.6
Q ss_pred CCCCCCeEEE--eCCEECCCCCCccccccc-cccccc
Q 040111 6 GIPPGQQRSI--FAGKQLEDGRTLADYKIQ-ESTLHL 39 (133)
Q Consensus 6 gip~~~Q~Li--~~gk~L~D~~tL~~ygI~-~stl~L 39 (133)
.+|+++|||. +.|+.|.|+.+|.+||+. ++++++
T Consensus 38 ~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 38 QLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 4688999995 779999999999999999 988764
No 94
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=96.70 E-value=0.0043 Score=39.59 Aligned_cols=67 Identities=13% Similarity=-0.013 Sum_probs=54.9
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEE--eCCcccCc---cccccccccEEeEEEEe
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADL--LKFPFFFF---EEVLSFFWFVVVGVIFC 110 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~--~~gk~L~d---~~tL~dy~~~~~~~~~~ 110 (133)
|.||.++|+.+.....+++|++++.+-+....+.......|+ |..+.+.+ +.||.+.++...++++.
T Consensus 7 I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 7 LQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred EEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 778999999999999999999999999977667666677776 67777864 36899999877776654
No 95
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.00041 Score=42.99 Aligned_cols=58 Identities=16% Similarity=0.127 Sum_probs=50.0
Q ss_pred cCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccE
Q 040111 46 CKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFV 103 (133)
Q Consensus 46 Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~ 103 (133)
+...-|+...+.-.+++||.++|..|+..+|-.++.-.|---+..++|.-+|++|.|-
T Consensus 6 ~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeih 63 (73)
T KOG3493|consen 6 LNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIH 63 (73)
T ss_pred hhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEec
Confidence 3444577778888899999999999999999999988888788888999999999874
No 96
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=96.67 E-value=0.00064 Score=43.27 Aligned_cols=39 Identities=33% Similarity=0.490 Sum_probs=31.7
Q ss_pred CCcccCCCCCCeEEEeC---CE--ECCCCCCccccccc-ccccccc
Q 040111 1 IEDKEGIPPGQQRSIFA---GK--QLEDGRTLADYKIQ-ESTLHLG 40 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~---gk--~L~D~~tL~~ygI~-~stl~L~ 40 (133)
|++..|++ ..|||.|+ |+ .|++..+|++|||+ +..|.|+
T Consensus 30 I~~~~~~~-g~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~ll 74 (80)
T cd01811 30 IRRSRNCS-GLQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLL 74 (80)
T ss_pred HHHhhCcc-cceEEEeecCCcccccccccccHhhhcceeccEEEEE
Confidence 34567888 69999998 54 37999999999999 8887764
No 97
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=96.58 E-value=0.00094 Score=45.85 Aligned_cols=60 Identities=27% Similarity=0.371 Sum_probs=39.8
Q ss_pred cccCCCCCCeEEEeCCEECCCCCCcccccc-------c-cccccccccccccCCCCCCCceeeccccCcHHHH
Q 040111 3 DKEGIPPGQQRSIFAGKQLEDGRTLADYKI-------Q-ESTLHLGWRADFCKNPDPQNITLEVESSDTIDNV 67 (133)
Q Consensus 3 ~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI-------~-~stl~L~~~~i~Vk~~~g~~~~l~V~~~~tV~~L 67 (133)
.-...|++.|||+-.+.+|+|..||+|||+ + .+++=|.+ |..+|..-.+++.+-.+--+|
T Consensus 33 gI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~-----r~~d~~fE~l~I~p~S~pp~l 100 (119)
T cd01788 33 GILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAF-----RSSDDTFEPLRIEPFSSPPEL 100 (119)
T ss_pred HHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEE-----ecCCCCccceeeeeCCCCCCc
Confidence 335679999999966678999999999999 5 55555433 334455445555554443333
No 98
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=96.56 E-value=0.0019 Score=40.16 Aligned_cols=58 Identities=9% Similarity=-0.039 Sum_probs=41.3
Q ss_pred CCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEe
Q 040111 48 NPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVV 105 (133)
Q Consensus 48 ~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~ 105 (133)
..+++...+.+.|++++.++-+....+.|+++++..|.|+++.++-+.+...-++.++
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~ 60 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNN 60 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCC
Confidence 3567888999999999999999999999999999999999999988888877766543
No 99
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.56 E-value=0.004 Score=39.70 Aligned_cols=67 Identities=12% Similarity=0.060 Sum_probs=55.5
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCc-eEEE--eCCcccCcc--ccccccccEEeEEEEe
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPA-EADL--LKFPFFFFE--EVLSFFWFVVVGVIFC 110 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~-q~L~--~~gk~L~d~--~tL~dy~~~~~~~~~~ 110 (133)
|-||.++|+.+.-...+++|+.+|.+-|......+... ..|+ |..+.+.++ .+|++.++...+.+++
T Consensus 9 I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 9 IQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp EEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred EEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 77899999999889999999999999999887766654 7776 677888764 5999998877776654
No 100
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=96.49 E-value=0.00061 Score=44.23 Aligned_cols=39 Identities=33% Similarity=0.579 Sum_probs=29.5
Q ss_pred CcccCCCCCCeEEEeC----CE---EC-CCCCCccccccc-ccccccc
Q 040111 2 EDKEGIPPGQQRSIFA----GK---QL-EDGRTLADYKIQ-ESTLHLG 40 (133)
Q Consensus 2 ~~~~gip~~~Q~Li~~----gk---~L-~D~~tL~~ygI~-~stl~L~ 40 (133)
+...|+|++.|+|.+. +. .+ +|..+|.+||+. +.+||+.
T Consensus 34 ~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 34 EKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp HHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred HHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 4568999999999876 22 24 578999999999 9999863
No 101
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=96.16 E-value=0.016 Score=36.66 Aligned_cols=64 Identities=13% Similarity=0.036 Sum_probs=50.4
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEE--eCCcccCc---cccccccccEEeEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADL--LKFPFFFF---EEVLSFFWFVVVGVI 108 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~--~~gk~L~d---~~tL~dy~~~~~~~~ 108 (133)
|.||.++|+.+.-....++|+.+|.+-|.....- .....|+ |..+.+.+ +.||.+.++...+++
T Consensus 5 i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~~~ 73 (77)
T cd01767 5 IQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEVVF 73 (77)
T ss_pred EEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCccceEE
Confidence 6789999999888999999999999999875432 5556676 66777754 679999998755544
No 102
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.00 E-value=0.018 Score=36.79 Aligned_cols=66 Identities=11% Similarity=0.023 Sum_probs=52.5
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEE--eCCcccCc---cccccccccEEeEEEEe
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADL--LKFPFFFF---EEVLSFFWFVVVGVIFC 110 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~--~~gk~L~d---~~tL~dy~~~~~~~~~~ 110 (133)
|.||.++|+.+.-....++|++++.+-|+...+-+ ....|+ |-.+.+.+ +.||.+.++.+.+++++
T Consensus 7 i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 7 IQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 67899999998888999999999999998755432 446666 77888864 47999999887776654
No 103
>PLN02560 enoyl-CoA reductase
Probab=95.75 E-value=0.0042 Score=49.57 Aligned_cols=38 Identities=26% Similarity=0.500 Sum_probs=30.9
Q ss_pred CcccCC-CCCCeEEEeC---C----EECCCCCCccccccc-cccccc
Q 040111 2 EDKEGI-PPGQQRSIFA---G----KQLEDGRTLADYKIQ-ESTLHL 39 (133)
Q Consensus 2 ~~~~gi-p~~~Q~Li~~---g----k~L~D~~tL~~ygI~-~stl~L 39 (133)
+++.++ ++++|||.+. | +.|+|+.+|.+||+. ++++++
T Consensus 34 sk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 34 HKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred HHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 456665 8999999983 3 378999999999999 988663
No 104
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.67 E-value=0.035 Score=35.58 Aligned_cols=65 Identities=9% Similarity=-0.005 Sum_probs=51.5
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcCC-CCCceEEE--eCCcccCc-cccccccccEEeEE
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRI-PPPAEADL--LKFPFFFF-EEVLSFFWFVVVGV 107 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gI-p~~~q~L~--~~gk~L~d-~~tL~dy~~~~~~~ 107 (133)
.|.||.++|+.+......++||++|.+-|....+- ......|+ |-.+.|.| +.||.|.++.+..+
T Consensus 6 ~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v 74 (79)
T cd01770 6 SIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVI 74 (79)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEE
Confidence 37799999999999999999999999999986542 33556676 77888876 67999998875443
No 105
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.0087 Score=48.01 Aligned_cols=40 Identities=33% Similarity=0.631 Sum_probs=36.1
Q ss_pred CcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccc
Q 040111 2 EDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGW 41 (133)
Q Consensus 2 ~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~ 41 (133)
+++.|+|+++.++||.||.|+|+.|+..+.+. -+.+|.+.
T Consensus 34 ak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~ 74 (446)
T KOG0006|consen 34 AKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIML 74 (446)
T ss_pred HHhhCCChhheEEEEeccccccCceeecccccccchhhhhc
Confidence 56799999999999999999999999999988 88888763
No 106
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.034 Score=37.26 Aligned_cols=59 Identities=5% Similarity=-0.038 Sum_probs=52.2
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCcccccccccc
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWF 102 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~ 102 (133)
+.|+.-++....+.|..+++...|+..-+++.|++.+..|++|.|+.+...+|-++.++
T Consensus 23 LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~m 81 (99)
T KOG1769|consen 23 LKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEM 81 (99)
T ss_pred EEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCC
Confidence 44555456667889999999999999999999999999999999999999999998886
No 107
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=95.42 E-value=0.0058 Score=34.65 Aligned_cols=39 Identities=46% Similarity=0.644 Sum_probs=33.8
Q ss_pred CcccCCCCCCeEEEeCCEECCCCCCccccccc-ccccccc
Q 040111 2 EDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLG 40 (133)
Q Consensus 2 ~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~ 40 (133)
.++.|+|++.|.|+++|..+++...+.+|++. ++++++.
T Consensus 28 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 67 (69)
T cd00196 28 AKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLV 67 (69)
T ss_pred HHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEE
Confidence 34567899999999999999998888899999 8888864
No 108
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.21 E-value=0.053 Score=35.25 Aligned_cols=66 Identities=11% Similarity=0.025 Sum_probs=53.4
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCC--cccC--------ccccccccccEEeEEEEe
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKF--PFFF--------FEEVLSFFWFVVVGVIFC 110 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~g--k~L~--------d~~tL~dy~~~~~~~~~~ 110 (133)
|.+|.++|+.+.-....++|+++|.+-|.. .+-.++...|+.+- +.+. .+.||.+-|+...++.|+
T Consensus 7 I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V 82 (85)
T cd01774 7 IVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFV 82 (85)
T ss_pred EEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEE
Confidence 678999999988888899999999999964 55677889999666 8885 257999999876666553
No 109
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.01 E-value=0.032 Score=42.26 Aligned_cols=56 Identities=11% Similarity=0.072 Sum_probs=51.3
Q ss_pred CCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEe
Q 040111 50 DPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVV 105 (133)
Q Consensus 50 ~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~ 105 (133)
+++.+.+.+...+|+.++|.++..+.|+.+-.|++.|+|+.+-|...|..+++-..
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg 210 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKG 210 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCC
Confidence 56778888999999999999999999999999999999999999999999987544
No 110
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.70 E-value=0.087 Score=34.17 Aligned_cols=67 Identities=12% Similarity=0.072 Sum_probs=55.6
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEE--eCCcccCc---cccccccccEEeEEEEe
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADL--LKFPFFFF---EEVLSFFWFVVVGVIFC 110 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~--~~gk~L~d---~~tL~dy~~~~~~~~~~ 110 (133)
.|.||.++|+...-....++++++|-.-++. .|.+++...|+ |--+.+.. +.||.+.++..-.++|+
T Consensus 7 ~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfV 78 (82)
T cd01773 7 RLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFV 78 (82)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEE
Confidence 4789999999998888899999999999888 68899999998 66677642 47999999877666654
No 111
>smart00455 RBD Raf-like Ras-binding domain.
Probab=94.66 E-value=0.058 Score=33.82 Aligned_cols=48 Identities=21% Similarity=0.185 Sum_probs=41.7
Q ss_pred ccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCC--cccC
Q 040111 45 FCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKF--PFFF 92 (133)
Q Consensus 45 ~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~g--k~L~ 92 (133)
.|..++|+...+.+.|+.|+.++-..+.++.|+.++...+...| ++|.
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g~~k~ld 52 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRGEKKPLD 52 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccee
Confidence 35578999999999999999999999999999999999998855 4444
No 112
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=94.31 E-value=0.055 Score=34.20 Aligned_cols=44 Identities=20% Similarity=0.175 Sum_probs=39.8
Q ss_pred ccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCC
Q 040111 45 FCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKF 88 (133)
Q Consensus 45 ~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~g 88 (133)
.|..++|+...+.+.|.+|+.++-.++.++.|+.|+...+...|
T Consensus 3 ~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 3 RVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 45678999999999999999999999999999999999988654
No 113
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=94.26 E-value=0.027 Score=35.87 Aligned_cols=62 Identities=8% Similarity=-0.007 Sum_probs=42.6
Q ss_pred ccCCCCCCCceeeccccCcHHHHHHHhhhhcCCC---CC---ceEEE-eCCcccCccccccccccEEeE
Q 040111 45 FCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIP---PP---AEADL-LKFPFFFFEEVLSFFWFVVVG 106 (133)
Q Consensus 45 ~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp---~~---~q~L~-~~gk~L~d~~tL~dy~~~~~~ 106 (133)
.|...+|+.+.+.++.+.+|++|...|.+..+.+ +. ..+|. -+|..|.++.+|++|++....
T Consensus 6 tv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd 74 (79)
T PF08817_consen 6 TVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGD 74 (79)
T ss_dssp EEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-
T ss_pred EEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCC
Confidence 3444446788899999999999999999987753 23 35666 789999999999999986443
No 114
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.60 E-value=0.19 Score=32.20 Aligned_cols=66 Identities=8% Similarity=-0.092 Sum_probs=54.2
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEE--eCCcccC--c-cccccccccEEeEEEEe
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADL--LKFPFFF--F-EEVLSFFWFVVVGVIFC 110 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~--~~gk~L~--d-~~tL~dy~~~~~~~~~~ 110 (133)
|.+|.++|+...-....++++++|-.-+.. .|.++...+|+ |--+.+. | +.||.+.++...+++|+
T Consensus 7 i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~-~~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~V 77 (80)
T cd01771 7 LRVRTPSGDFLERRFLGDTPLQVLLNFVAS-KGYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLIL 77 (80)
T ss_pred EEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEE
Confidence 678999999988889999999999999976 48888889998 7778774 2 56999998876666554
No 115
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=93.56 E-value=0.061 Score=34.76 Aligned_cols=47 Identities=17% Similarity=0.078 Sum_probs=38.6
Q ss_pred CceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccc
Q 040111 53 NITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSF 99 (133)
Q Consensus 53 ~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~d 99 (133)
++.+.+++.-+..+|.++|.++.++|+++..|.|....=.+--+|+|
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~s~~~v~l~d 58 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEASGEDVILSD 58 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCCCCCccCcCh
Confidence 78899999999999999999999999999999997655433333433
No 116
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=93.35 E-value=0.15 Score=33.39 Aligned_cols=42 Identities=12% Similarity=0.131 Sum_probs=36.2
Q ss_pred ccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCC---CceEEEe
Q 040111 45 FCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPP---PAEADLL 86 (133)
Q Consensus 45 ~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~---~~q~L~~ 86 (133)
.++++.|+.+.+.+.++..+.+|++.|+++.|+.. +...|.|
T Consensus 4 K~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 4 KFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred EeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 46788999999999999999999999999999876 4556644
No 117
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=91.78 E-value=0.099 Score=43.81 Aligned_cols=41 Identities=24% Similarity=0.381 Sum_probs=37.9
Q ss_pred cccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 3 DKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 3 ~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
..+|+||++|++.+.|..+.|+-.+..-+|+ +.+++|+.+.
T Consensus 35 ~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~ 76 (473)
T KOG1872|consen 35 ALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTA 76 (473)
T ss_pred HhcCCCccceeEEEecccccccccccccccCCCCEEEeeccc
Confidence 4589999999999999999999999999999 9999998876
No 118
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=91.47 E-value=0.056 Score=43.11 Aligned_cols=73 Identities=16% Similarity=0.144 Sum_probs=0.0
Q ss_pred cccCCCCCCCceeec--c-c--cCcHHHHHHHhhh----------hcCCCCCceE-----EEeCCcccCccccccccc--
Q 040111 44 DFCKNPDPQNITLEV--E-S--SDTIDNVKAKIQD----------KKRIPPPAEA-----DLLKFPFFFFEEVLSFFW-- 101 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V--~-~--~~tV~~LK~~I~~----------~~gIp~~~q~-----L~~~gk~L~d~~tL~dy~-- 101 (133)
|.+|.+-+....+.+ . + +.+|.++|..+++ .+++|.+..+ |.|+-+++.|.++|.+..
T Consensus 81 V~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l~~ 160 (309)
T PF12754_consen 81 VHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVLAD 160 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHHhc
Confidence 445555444433322 2 2 6899999999999 8899999999 999999998888877663
Q ss_pred ----------cEEeEEEEeCceeee
Q 040111 102 ----------FVVVGVIFCGCRVNF 116 (133)
Q Consensus 102 ----------~~~~~~~~~~~~~~~ 116 (133)
=.+.|+.+.||+.-.
T Consensus 161 ~~~~l~~~~~~vE~gvMVlGGa~~~ 185 (309)
T PF12754_consen 161 SESRLLSGGKEVEFGVMVLGGAAVI 185 (309)
T ss_dssp -------------------------
T ss_pred ccchhccCCceEEEEEEEECCcccC
Confidence 145566666776544
No 119
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=91.11 E-value=0.57 Score=31.02 Aligned_cols=55 Identities=5% Similarity=0.007 Sum_probs=49.7
Q ss_pred CCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccE
Q 040111 49 PDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFV 103 (133)
Q Consensus 49 ~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~ 103 (133)
-+|.++.+.+..+++-..|....+.+.|=..+..|++|.|+.++-++|-.|+++-
T Consensus 32 qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmE 86 (103)
T COG5227 32 QDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDME 86 (103)
T ss_pred CCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCc
Confidence 3566778899999999999999999999999999999999999999999998863
No 120
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=90.88 E-value=0.084 Score=42.67 Aligned_cols=58 Identities=9% Similarity=0.092 Sum_probs=46.0
Q ss_pred cccCCCCCCCc--eeeccccCcHHHHHHHhhhhcC--CCCCceEEEeCCcccCccccccccc
Q 040111 44 DFCKNPDPQNI--TLEVESSDTIDNVKAKIQDKKR--IPPPAEADLLKFPFFFFEEVLSFFW 101 (133)
Q Consensus 44 i~Vk~~~g~~~--~l~V~~~~tV~~LK~~I~~~~g--Ip~~~q~L~~~gk~L~d~~tL~dy~ 101 (133)
+++|.++.+.. ++..+..-||.+||..+....- =-..+|||+|.||.|.|...|+|.-
T Consensus 12 lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~l 73 (391)
T KOG4583|consen 12 LLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWL 73 (391)
T ss_pred EEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHH
Confidence 56788776654 4555678899999999988763 3467899999999999998888764
No 121
>PRK06437 hypothetical protein; Provisional
Probab=90.13 E-value=1.4 Score=27.13 Aligned_cols=49 Identities=8% Similarity=-0.038 Sum_probs=39.0
Q ss_pred CCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCcccccccccc
Q 040111 50 DPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWF 102 (133)
Q Consensus 50 ~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~ 102 (133)
.++...++++...|+++|-+. .|++++...+..+|+.+..+..|++=+=
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~~~~~L~dgD~ 57 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVLEDHNVKKEDD 57 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECCCceEcCCCCE
Confidence 445567888888999988755 5899998889999999998777877543
No 122
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=90.06 E-value=0.26 Score=30.81 Aligned_cols=56 Identities=14% Similarity=0.082 Sum_probs=40.9
Q ss_pred cCCCCCCCceeeccccCcHHHHHHHhhhhcCCC-CCceEEEe----C--CcccCccccccccc
Q 040111 46 CKNPDPQNITLEVESSDTIDNVKAKIQDKKRIP-PPAEADLL----K--FPFFFFEEVLSFFW 101 (133)
Q Consensus 46 Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp-~~~q~L~~----~--gk~L~d~~tL~dy~ 101 (133)
|+.++|....+++++++|+.++-.+|++..|+. .+-.-|.+ . ..-|+.+++|.++.
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~ 63 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQL 63 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGST
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHc
Confidence 456788889999999999999999999999974 44555666 1 22345556666653
No 123
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=89.82 E-value=0.67 Score=30.29 Aligned_cols=55 Identities=11% Similarity=0.016 Sum_probs=39.4
Q ss_pred ceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEE
Q 040111 54 ITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVI 108 (133)
Q Consensus 54 ~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~ 108 (133)
+...++-.+++..||..++.+.|++.+...+...+..|+.+++|-|=.+.-.|.|
T Consensus 5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlV 59 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLV 59 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEE
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEE
Confidence 4556777889999999999999999999999999988999999999987555554
No 124
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=89.64 E-value=1.6 Score=27.02 Aligned_cols=55 Identities=7% Similarity=0.015 Sum_probs=38.8
Q ss_pred CceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEEeC
Q 040111 53 NITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIFCG 111 (133)
Q Consensus 53 ~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~~~ 111 (133)
...+++++..|++++-+.+ ++++..-.+..+|.....+..|++=+-..+--.++|
T Consensus 15 ~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~~~~l~~gD~Veii~~V~G 69 (70)
T PRK08364 15 EKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALEDDPVKDGDYVEVIPVVSG 69 (70)
T ss_pred ceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCCCcCcCCCCEEEEEccccC
Confidence 4567778888999988764 777777777788888877777777764333333344
No 125
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=89.44 E-value=0.69 Score=29.36 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=38.4
Q ss_pred cCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCc
Q 040111 46 CKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFP 89 (133)
Q Consensus 46 Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk 89 (133)
|..++|+...+.+.|..||.++-.+..++.|+.++.--++..|.
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~ 47 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGG 47 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecC
Confidence 34578999999999999999999999999999999888876553
No 126
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=89.42 E-value=0.33 Score=30.41 Aligned_cols=44 Identities=20% Similarity=0.178 Sum_probs=35.2
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeC
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLK 87 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~ 87 (133)
+.|..++|+...+.+.+..|+.+.-.++.++.|+.++...+...
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~ 46 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLV 46 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEE
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEc
Confidence 34566889999999999999999999999999999997777643
No 127
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=89.24 E-value=0.28 Score=32.87 Aligned_cols=40 Identities=18% Similarity=0.431 Sum_probs=36.0
Q ss_pred cccCCCCCCeEEEeCCEECCCCCCccccccc-ccccccccc
Q 040111 3 DKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWR 42 (133)
Q Consensus 3 ~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~ 42 (133)
++.|++...-|++|.|+.+.+..|-.+.+.. +..|.+...
T Consensus 52 ~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~ 92 (99)
T KOG1769|consen 52 ERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQE 92 (99)
T ss_pred HHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEee
Confidence 5789999999999999999999999999999 999886543
No 128
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=88.24 E-value=0.27 Score=32.83 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=17.4
Q ss_pred CCCCeEEEeCCEECCCCCCcc
Q 040111 8 PPGQQRSIFAGKQLEDGRTLA 28 (133)
Q Consensus 8 p~~~Q~Li~~gk~L~D~~tL~ 28 (133)
.-.++||||+|+.|.|+..|.
T Consensus 42 s~~rLRlI~~Gr~L~d~t~l~ 62 (97)
T PF10302_consen 42 SRRRLRLIYAGRLLNDHTDLS 62 (97)
T ss_pred ccccEEeeecCcccCccchhh
Confidence 345699999999999988774
No 129
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=87.54 E-value=0.27 Score=39.68 Aligned_cols=51 Identities=25% Similarity=0.300 Sum_probs=45.1
Q ss_pred CCCCCCceeecc-ccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCcccccc
Q 040111 48 NPDPQNITLEVE-SSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLS 98 (133)
Q Consensus 48 ~~~g~~~~l~V~-~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~ 98 (133)
..+|+.+.+.+. .++.+..+|.++.+..+|+++.|++.+.|..+.|+.+++
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~~ 340 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSLA 340 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCcccccc
Confidence 567888888777 789999999999999999999999999999999985543
No 130
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=87.19 E-value=1.8 Score=26.86 Aligned_cols=50 Identities=8% Similarity=-0.084 Sum_probs=36.7
Q ss_pred CceeeccccCcHHHHHHHhhhhcCC----CCCceEEEeCCcccCcccccccccc
Q 040111 53 NITLEVESSDTIDNVKAKIQDKKRI----PPPAEADLLKFPFFFFEEVLSFFWF 102 (133)
Q Consensus 53 ~~~l~V~~~~tV~~LK~~I~~~~gI----p~~~q~L~~~gk~L~d~~tL~dy~~ 102 (133)
...++++...|+.+|.+.+.++.+- ......+..+|+....+..|++-+-
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~~~~l~~gD~ 70 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRLDTPLKDGDE 70 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCCCcccCCCCE
Confidence 3567777789999999999987542 3345566678888887777777653
No 131
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=87.03 E-value=0.63 Score=36.34 Aligned_cols=54 Identities=20% Similarity=0.097 Sum_probs=39.2
Q ss_pred eeccccCcHHHHHHHhhhh-cCCCCCceEEE----eCCcccCccccccccccEEeEEEE
Q 040111 56 LEVESSDTIDNVKAKIQDK-KRIPPPAEADL----LKFPFFFFEEVLSFFWFVVVGVIF 109 (133)
Q Consensus 56 l~V~~~~tV~~LK~~I~~~-~gIp~~~q~L~----~~gk~L~d~~tL~dy~~~~~~~~~ 109 (133)
.+.+..+|+.|++..|..+ ..+.+..+|+. -+|+++.|+.+|++|+.-+...|+
T Consensus 17 ~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~ 75 (297)
T KOG1639|consen 17 KDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIY 75 (297)
T ss_pred ecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEE
Confidence 5567889999999766665 46777544443 589999999999999765443333
No 132
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=86.45 E-value=0.79 Score=29.07 Aligned_cols=43 Identities=14% Similarity=-0.068 Sum_probs=37.0
Q ss_pred ccccCcHHHHHHHhhhhcC-CCCCceEEEeCCcccCcccccccc
Q 040111 58 VESSDTIDNVKAKIQDKKR-IPPPAEADLLKFPFFFFEEVLSFF 100 (133)
Q Consensus 58 V~~~~tV~~LK~~I~~~~g-Ip~~~q~L~~~gk~L~d~~tL~dy 100 (133)
|.++++|.++++-+.+... ..-....|.++|+.|.+...|+++
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i 44 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEI 44 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhh
Confidence 5688999999999999865 677888899999999888888877
No 133
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=85.73 E-value=0.15 Score=32.78 Aligned_cols=40 Identities=25% Similarity=0.359 Sum_probs=19.0
Q ss_pred CCcccCCCCCCeEEEeC--C-EEC--CCCCCccccccc-ccccccc
Q 040111 1 IEDKEGIPPGQQRSIFA--G-KQL--EDGRTLADYKIQ-ESTLHLG 40 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~--g-k~L--~D~~tL~~ygI~-~stl~L~ 40 (133)
|++..++|.+.|.|+.+ + ..| .++.+|+++||+ |+.+.|.
T Consensus 33 I~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 33 ISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp HHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred HHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 34567899999988755 2 245 578999999999 9988763
No 134
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=85.56 E-value=1.2 Score=28.41 Aligned_cols=49 Identities=16% Similarity=0.141 Sum_probs=41.1
Q ss_pred cCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCcc
Q 040111 46 CKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFE 94 (133)
Q Consensus 46 Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~ 94 (133)
|-.++|+...+.+.+++|+.++-+....+.++.|....|-..-..++|.
T Consensus 4 V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrlk~~~~e~~ 52 (77)
T cd01818 4 VCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRLKFLRMENH 52 (77)
T ss_pred EECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEEEEEecCCc
Confidence 5568899999999999999999999999999999988876544445554
No 135
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=85.56 E-value=0.37 Score=30.51 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=18.6
Q ss_pred eCCEECCCCCCccccccc-cccccc
Q 040111 16 FAGKQLEDGRTLADYKIQ-ESTLHL 39 (133)
Q Consensus 16 ~~gk~L~D~~tL~~ygI~-~stl~L 39 (133)
-.|..|+++.||+++||. |+.++|
T Consensus 54 ~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 54 AGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred cCCcccCCcCcHhHcCCCCCCEEEe
Confidence 458899999999999999 998876
No 136
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=84.61 E-value=2.8 Score=26.06 Aligned_cols=61 Identities=16% Similarity=0.133 Sum_probs=47.2
Q ss_pred CCCCceeeccccCcHHHHHHHhhhhc---CCCCCceEEE-eCCcccCccccccccccEEeEEEEe
Q 040111 50 DPQNITLEVESSDTIDNVKAKIQDKK---RIPPPAEADL-LKFPFFFFEEVLSFFWFVVVGVIFC 110 (133)
Q Consensus 50 ~g~~~~l~V~~~~tV~~LK~~I~~~~---gIp~~~q~L~-~~gk~L~d~~tL~dy~~~~~~~~~~ 110 (133)
+|++..++..++....-+.++--+.. |-|++..-|- -+|..|+-++.+.||+|+...-.|.
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFL 68 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFL 68 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEE
Confidence 68888888888887777776655554 4788888887 5788888899999999987665543
No 137
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=84.21 E-value=3.5 Score=27.42 Aligned_cols=40 Identities=8% Similarity=-0.004 Sum_probs=33.9
Q ss_pred CCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeC
Q 040111 47 KNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLK 87 (133)
Q Consensus 47 k~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~ 87 (133)
+...|++..+.|+.+.+-.+|+.++.+..+++.. ..|-|.
T Consensus 18 ~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky~ 57 (97)
T cd06410 18 RYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKYQ 57 (97)
T ss_pred EEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEEE
Confidence 3446889999999999999999999999999876 666653
No 138
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=83.94 E-value=2.4 Score=26.42 Aligned_cols=40 Identities=8% Similarity=0.076 Sum_probs=34.8
Q ss_pred CCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCc
Q 040111 50 DPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFP 89 (133)
Q Consensus 50 ~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk 89 (133)
++..+.+.++++.|-.+|+.+|+++.+++....+|-|...
T Consensus 9 ~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~De 48 (81)
T smart00666 9 GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDE 48 (81)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECC
Confidence 4567888999999999999999999999888888988743
No 139
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=83.35 E-value=2.8 Score=27.35 Aligned_cols=57 Identities=18% Similarity=0.141 Sum_probs=42.9
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCC-CCCceEEEeCCcccCcccccccc
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRI-PPPAEADLLKFPFFFFEEVLSFF 100 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gI-p~~~q~L~~~gk~L~d~~tL~dy 100 (133)
+.|-..+|.+..+.|+..+|+.++-+.++++... +.....|+=.-..|.-++.+.|.
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDH 62 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDH 62 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccch
Confidence 4556678999999999999999999999999985 55556666555555555555554
No 140
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=81.90 E-value=3.1 Score=26.73 Aligned_cols=41 Identities=12% Similarity=0.021 Sum_probs=33.1
Q ss_pred CCCCceeeccccCcHHHHHHHhhhhcCCCC-CceEEEeCCcc
Q 040111 50 DPQNITLEVESSDTIDNVKAKIQDKKRIPP-PAEADLLKFPF 90 (133)
Q Consensus 50 ~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~-~~q~L~~~gk~ 90 (133)
+|..+.+.++++.+..+|++.|+++.++.. ....|-|-.-.
T Consensus 8 ~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Dde 49 (82)
T cd06407 8 GEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDD 49 (82)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCC
Confidence 566788999999999999999999999865 56667664443
No 141
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=81.30 E-value=2.4 Score=27.27 Aligned_cols=38 Identities=8% Similarity=0.099 Sum_probs=33.4
Q ss_pred CceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcc
Q 040111 53 NITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPF 90 (133)
Q Consensus 53 ~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~ 90 (133)
++.+.+.+..+..+|..+|.++...+++.-+|.|.-..
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~~~ 45 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRAPG 45 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecCCC
Confidence 45678889999999999999999999999999986543
No 142
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=80.64 E-value=2 Score=33.18 Aligned_cols=83 Identities=16% Similarity=0.307 Sum_probs=53.2
Q ss_pred cccCCCCCCeEEEeC----CE--ECCCCCCccccccc-cccccccccc-------------------------ccc---C
Q 040111 3 DKEGIPPGQQRSIFA----GK--QLEDGRTLADYKIQ-ESTLHLGWRA-------------------------DFC---K 47 (133)
Q Consensus 3 ~~~gip~~~Q~Li~~----gk--~L~D~~tL~~ygI~-~stl~L~~~~-------------------------i~V---k 47 (133)
++-|+|++..-++|. ++ .++...|+....+. |+.|..-... |.+ .
T Consensus 106 ~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v~~Yy~~l~nrv~V~f~~~~ 185 (249)
T PF12436_consen 106 ERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDVKEYYDFLYNRVEVEFKPKD 185 (249)
T ss_dssp HHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SHHHHHHHHHHEEEEEEEETT
T ss_pred HHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCHHHHHHHHhCeEEEEEEECC
Confidence 457889888888776 55 37889999999999 8877655421 111 1
Q ss_pred CCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEE
Q 040111 48 NPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADL 85 (133)
Q Consensus 48 ~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~ 85 (133)
.+.+..+.+.+...+|-.++-++|++..|++|...||.
T Consensus 186 ~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 186 NPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp STT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 34455789999999999999999999999999999887
No 143
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=80.50 E-value=8.4 Score=23.12 Aligned_cols=53 Identities=17% Similarity=0.025 Sum_probs=35.4
Q ss_pred eeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCcc----ccccccccEEeEEEEeCc
Q 040111 56 LEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFE----EVLSFFWFVVVGVIFCGC 112 (133)
Q Consensus 56 l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~----~tL~dy~~~~~~~~~~~~ 112 (133)
++++...|+.+|.+++ +++++...+..+|+....+ ..|.+=+-..+--.++||
T Consensus 9 ~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~~~~~~~L~~gD~V~ii~~v~GG 65 (65)
T cd00565 9 REVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRSEWASTPLQDGDRIEIVTAVGGG 65 (65)
T ss_pred EEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHHHcCceecCCCCEEEEEEeccCC
Confidence 4556678999988764 5778888888899888765 566665544333444443
No 144
>COG5417 Uncharacterized small protein [Function unknown]
Probab=80.18 E-value=3 Score=26.62 Aligned_cols=58 Identities=10% Similarity=-0.009 Sum_probs=47.1
Q ss_pred CCCCCCCceeeccccCcHHHHHHHhhhhcCC--C---CCceEEEeCCcccCccccccccccEE
Q 040111 47 KNPDPQNITLEVESSDTIDNVKAKIQDKKRI--P---PPAEADLLKFPFFFFEEVLSFFWFVV 104 (133)
Q Consensus 47 k~~~g~~~~l~V~~~~tV~~LK~~I~~~~gI--p---~~~q~L~~~gk~L~d~~tL~dy~~~~ 104 (133)
+.-+|.++.+.++...++..+-..+.+...+ + -.+.+.+-.++.|.++..|+||+|++
T Consensus 12 t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~Iad 74 (81)
T COG5417 12 TNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIAD 74 (81)
T ss_pred EecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccC
Confidence 3446888999999999999988888777653 2 24567889999999999999999874
No 145
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=79.51 E-value=1.7 Score=35.70 Aligned_cols=61 Identities=8% Similarity=-0.018 Sum_probs=49.9
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcC-CCCCceEEE--eCCcccCc-cccccccccEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKR-IPPPAEADL--LKFPFFFF-EEVLSFFWFVV 104 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~g-Ip~~~q~L~--~~gk~L~d-~~tL~dy~~~~ 104 (133)
|-||..+|+........+.||.+++.-|..... -+...+.|+ |--|+|.| +.||.+-++.+
T Consensus 308 IQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~N 372 (380)
T KOG2086|consen 308 IQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLN 372 (380)
T ss_pred EEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchh
Confidence 788899999988889999999999999999874 556567776 67788887 57999877643
No 146
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=79.27 E-value=2 Score=37.98 Aligned_cols=43 Identities=14% Similarity=0.198 Sum_probs=37.4
Q ss_pred CCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccC
Q 040111 50 DPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFF 92 (133)
Q Consensus 50 ~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~ 92 (133)
+...+.+-++++.|+..++..|...+|||.+.|-|+|.|..-.
T Consensus 323 ~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~h 365 (732)
T KOG4250|consen 323 QATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLSH 365 (732)
T ss_pred cceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCccc
Confidence 3456788899999999999999999999999999999866544
No 147
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=78.61 E-value=1.7 Score=28.43 Aligned_cols=41 Identities=27% Similarity=0.315 Sum_probs=26.3
Q ss_pred CcccCCCCCCeEEEeCCEECCCCCCccccccc-ccccccccc
Q 040111 2 EDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWR 42 (133)
Q Consensus 2 ~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~ 42 (133)
+++.+++-+.=.+..++.+|+++.+|.|.+++ ...+.+.+.
T Consensus 23 e~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQ 64 (88)
T PF11620_consen 23 ERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQ 64 (88)
T ss_dssp HHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEE
T ss_pred HHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEE
Confidence 45677777777888899899999999999999 888886544
No 148
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=78.42 E-value=8.8 Score=23.95 Aligned_cols=49 Identities=12% Similarity=0.040 Sum_probs=34.6
Q ss_pred ceeecccc-CcHHHHHHHhhhhcC-CC--CCceEEEeCCcccCcccccccccc
Q 040111 54 ITLEVESS-DTIDNVKAKIQDKKR-IP--PPAEADLLKFPFFFFEEVLSFFWF 102 (133)
Q Consensus 54 ~~l~V~~~-~tV~~LK~~I~~~~g-Ip--~~~q~L~~~gk~L~d~~tL~dy~~ 102 (133)
..++++.+ .|+.+|.+.+.++.+ +. .....+..+++...++..|++-+-
T Consensus 18 ~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~~~~l~dgDe 70 (80)
T TIGR01682 18 ETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTDDALLNEGDE 70 (80)
T ss_pred EEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCCCcCcCCCCE
Confidence 46777766 899999999998864 21 133456678887777777777653
No 149
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=78.22 E-value=6.9 Score=24.13 Aligned_cols=39 Identities=13% Similarity=0.018 Sum_probs=32.5
Q ss_pred CCCceeecc-ccCcHHHHHHHhhhhcCCCCCceEEEeCCc
Q 040111 51 PQNITLEVE-SSDTIDNVKAKIQDKKRIPPPAEADLLKFP 89 (133)
Q Consensus 51 g~~~~l~V~-~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk 89 (133)
|..+.+.+. .+.|..+|+++|+++.+++.....+-|...
T Consensus 9 ~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~ 48 (81)
T cd05992 9 GEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDE 48 (81)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCC
Confidence 567788888 899999999999999999876677777653
No 150
>PRK07440 hypothetical protein; Provisional
Probab=78.02 E-value=14 Score=22.86 Aligned_cols=57 Identities=9% Similarity=-0.041 Sum_probs=41.4
Q ss_pred CCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccC----ccccccccccEEeEEEEeCc
Q 040111 50 DPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFF----FEEVLSFFWFVVVGVIFCGC 112 (133)
Q Consensus 50 ~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~----d~~tL~dy~~~~~~~~~~~~ 112 (133)
+|+. .+++...|+.+|-.. .++++....+-.+|..+. ++..|++-+-.++--++.||
T Consensus 10 NG~~--~~~~~~~tl~~lL~~----l~~~~~~vav~~N~~iv~r~~w~~~~L~~gD~IEIv~~v~GG 70 (70)
T PRK07440 10 NGET--RTCSSGTSLPDLLQQ----LGFNPRLVAVEYNGEILHRQFWEQTQVQPGDRLEIVTIVGGG 70 (70)
T ss_pred CCEE--EEcCCCCCHHHHHHH----cCCCCCeEEEEECCEEeCHHHcCceecCCCCEEEEEEEecCC
Confidence 4554 455667888887653 678888888889999998 66778888766666666665
No 151
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=77.76 E-value=4.3 Score=26.60 Aligned_cols=56 Identities=16% Similarity=0.117 Sum_probs=42.3
Q ss_pred ccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceE---------EEeCCcccCcccccccc
Q 040111 45 FCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEA---------DLLKFPFFFFEEVLSFF 100 (133)
Q Consensus 45 ~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~---------L~~~gk~L~d~~tL~dy 100 (133)
.|-.++|..+.+++..+++..++-+.++.+.|+|.+-+. ..|.-|.++++.+-.-|
T Consensus 5 ~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~YFaLFev~~~~f~RKL~dfE~Ph~ly 69 (87)
T cd01777 5 RIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQNYFALFEVINHSFVRKLAPNEFPHKLY 69 (87)
T ss_pred EEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHhheeeeEEecceEEEeccCccCCceEE
Confidence 344577999999999999999999999999999976554 22445555556665555
No 152
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.74 E-value=1.2 Score=33.88 Aligned_cols=39 Identities=33% Similarity=0.447 Sum_probs=33.0
Q ss_pred cccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccc
Q 040111 3 DKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGW 41 (133)
Q Consensus 3 ~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~ 41 (133)
.++|+.+-.|+.+|+|+.|-|...|.+++|. ++...+.+
T Consensus 178 Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqv 217 (231)
T KOG0013|consen 178 AAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQV 217 (231)
T ss_pred HhhccchhhheeeccCCceeccccceeeeecCCCEEEEEE
Confidence 3567778889999999999999999999999 87666543
No 153
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=77.10 E-value=2.5 Score=30.58 Aligned_cols=81 Identities=20% Similarity=0.128 Sum_probs=52.2
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCC-CceEEEeCC------cccCccccccccccE--EeEEEEeCcee
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPP-PAEADLLKF------PFFFFEEVLSFFWFV--VVGVIFCGCRV 114 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~-~~q~L~~~g------k~L~d~~tL~dy~~~--~~~~~~~~~~~ 114 (133)
+.|..++|....+++++++|++++-..++++.|++. ..-.|.+.. ..+....++.+.... ..-+.| +.
T Consensus 6 ~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~f---r~ 82 (207)
T smart00295 6 LKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYF---RV 82 (207)
T ss_pred EEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEE---EE
Confidence 567788999999999999999999999999999853 223344321 234445555555432 112222 56
Q ss_pred eeeecc---cccCccc
Q 040111 115 NFWNAS---LRFDPEN 127 (133)
Q Consensus 115 ~~~~~~---~~~~~~~ 127 (133)
+||... +..||.-
T Consensus 83 r~~~~~~~~~~~d~~~ 98 (207)
T smart00295 83 KFYPPDPLQLKEDPTR 98 (207)
T ss_pred EEccCCHHHhcchhHH
Confidence 777654 4456543
No 154
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=76.03 E-value=4.5 Score=30.81 Aligned_cols=49 Identities=12% Similarity=0.013 Sum_probs=39.0
Q ss_pred ceeeccccCcHHHHHHHhhhhcCCCCCceEEE-eCC-----cccCc-ccccccccc
Q 040111 54 ITLEVESSDTIDNVKAKIQDKKRIPPPAEADL-LKF-----PFFFF-EEVLSFFWF 102 (133)
Q Consensus 54 ~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~-~~g-----k~L~d-~~tL~dy~~ 102 (133)
...+.+++.|++++|.+++-.+|.+++.+.|. |.| -.|.| +..|.+|..
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~ 70 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKV 70 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCC
Confidence 34556789999999999999999999999987 555 34554 578888863
No 155
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=75.41 E-value=15 Score=21.97 Aligned_cols=57 Identities=14% Similarity=0.030 Sum_probs=36.2
Q ss_pred CCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCc----cccccccccEEeEEEEeCc
Q 040111 50 DPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFF----EEVLSFFWFVVVGVIFCGC 112 (133)
Q Consensus 50 ~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d----~~tL~dy~~~~~~~~~~~~ 112 (133)
+|+. ++++.+.|+.+|.+. .+++++...+..+|+.+.. +..|.+=+-...--.+.||
T Consensus 4 Ng~~--~~~~~~~tv~~ll~~----l~~~~~~v~v~vN~~iv~~~~~~~~~L~~gD~veii~~V~GG 64 (64)
T TIGR01683 4 NGEP--VEVEDGLTLAALLES----LGLDPRRVAVAVNGEIVPRSEWDDTILKEGDRIEIVTFVGGG 64 (64)
T ss_pred CCeE--EEcCCCCcHHHHHHH----cCCCCCeEEEEECCEEcCHHHcCceecCCCCEEEEEEeccCC
Confidence 4444 344567789998875 4677777778889988742 2356666544444444443
No 156
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=74.50 E-value=17 Score=22.51 Aligned_cols=53 Identities=15% Similarity=0.080 Sum_probs=38.8
Q ss_pred eeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccC----ccccccccccEEeEEEEeCc
Q 040111 56 LEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFF----FEEVLSFFWFVVVGVIFCGC 112 (133)
Q Consensus 56 l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~----d~~tL~dy~~~~~~~~~~~~ 112 (133)
++++...|+++|-++ .|++++.-....+|.... .+..|++=+...+--++.||
T Consensus 12 ~e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr~~~~~~~l~~gD~ievv~~v~GG 68 (68)
T COG2104 12 VEIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPRSQWADTILKEGDRIEVVRVVGGG 68 (68)
T ss_pred EEcCCCCcHHHHHHH----hCCCCceEEEEECCEEccchhhhhccccCCCEEEEEEeecCC
Confidence 555666899998765 789999999999999998 56667776555555555554
No 157
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=73.91 E-value=4.1 Score=28.32 Aligned_cols=44 Identities=5% Similarity=-0.022 Sum_probs=35.4
Q ss_pred eccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCcccccccc
Q 040111 57 EVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFF 100 (133)
Q Consensus 57 ~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy 100 (133)
=|+.+.||+++...|..+.++++++--|..++.....+.++++.
T Consensus 46 lVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~l 89 (121)
T PTZ00380 46 ALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGDI 89 (121)
T ss_pred EcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHHH
Confidence 58999999999999999999999994454577666666677654
No 158
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=73.40 E-value=14 Score=22.15 Aligned_cols=56 Identities=13% Similarity=-0.050 Sum_probs=36.0
Q ss_pred CCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCc----cccccccccEEeEEEEeCc
Q 040111 50 DPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFF----EEVLSFFWFVVVGVIFCGC 112 (133)
Q Consensus 50 ~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d----~~tL~dy~~~~~~~~~~~~ 112 (133)
+|+.+.+ + ..|+.+|.+.+ +++++...+-.++....- +..|++-+-.+.--.+.||
T Consensus 6 Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~~~~~~~~~L~dgD~Ieiv~~V~GG 65 (65)
T PRK06488 6 NGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVHKEARAQFVLHEGDRIEILSPMQGG 65 (65)
T ss_pred CCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcCHHHcCccccCCCCEEEEEEeccCC
Confidence 5665554 3 35888888764 677766667788888764 5567777655444444444
No 159
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=72.66 E-value=6.7 Score=25.60 Aligned_cols=45 Identities=13% Similarity=0.002 Sum_probs=34.1
Q ss_pred cccCCC-CCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCc
Q 040111 44 DFCKNP-DPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFP 89 (133)
Q Consensus 44 i~Vk~~-~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk 89 (133)
+.||.. .|..+.+.++++.+-.+|..+|.+++++. ....+-|..-
T Consensus 3 ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE 48 (86)
T cd06408 3 IRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD 48 (86)
T ss_pred EEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence 344444 57788899999999999999999999995 4555555443
No 160
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=71.00 E-value=7.2 Score=24.23 Aligned_cols=38 Identities=16% Similarity=0.097 Sum_probs=32.0
Q ss_pred CCCce-eeccccCcHHHHHHHhhhhcCCCCCceEEEeCC
Q 040111 51 PQNIT-LEVESSDTIDNVKAKIQDKKRIPPPAEADLLKF 88 (133)
Q Consensus 51 g~~~~-l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~g 88 (133)
+..+. +.+.++.+..+|+.+|+++.+.+....+|.|..
T Consensus 10 ~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 10 GDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp TEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 33444 788888999999999999999998888998854
No 161
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=70.76 E-value=8.4 Score=24.26 Aligned_cols=35 Identities=23% Similarity=0.196 Sum_probs=30.1
Q ss_pred CCCceeeccccCcHHHHHHHhhhhcCCC--CCceEEE
Q 040111 51 PQNITLEVESSDTIDNVKAKIQDKKRIP--PPAEADL 85 (133)
Q Consensus 51 g~~~~l~V~~~~tV~~LK~~I~~~~gIp--~~~q~L~ 85 (133)
+...++.|++++|..++-+.+.++.++. ++...|+
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 5668899999999999999999999986 6666666
No 162
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=67.38 E-value=6.9 Score=35.68 Aligned_cols=52 Identities=17% Similarity=0.089 Sum_probs=44.2
Q ss_pred CCCCceeecc-ccCcHHHHHHHhhhhcCCCCCceEEE-eCCcccCccccccccc
Q 040111 50 DPQNITLEVE-SSDTIDNVKAKIQDKKRIPPPAEADL-LKFPFFFFEEVLSFFW 101 (133)
Q Consensus 50 ~g~~~~l~V~-~~~tV~~LK~~I~~~~gIp~~~q~L~-~~gk~L~d~~tL~dy~ 101 (133)
.|+..+++.+ ...|+++||.+|+.+.|+...+|.++ -+|..|.-+++|..|-
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~S 56 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEIS 56 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhc
Confidence 4677777766 46899999999999999999999977 5888898899999884
No 163
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=65.71 E-value=9.6 Score=23.86 Aligned_cols=50 Identities=16% Similarity=0.035 Sum_probs=32.6
Q ss_pred CCceeeccccCcHHHHHHHhhhhcC-CCC--CceEEEeCCcccCccccccccc
Q 040111 52 QNITLEVESSDTIDNVKAKIQDKKR-IPP--PAEADLLKFPFFFFEEVLSFFW 101 (133)
Q Consensus 52 ~~~~l~V~~~~tV~~LK~~I~~~~g-Ip~--~~q~L~~~gk~L~d~~tL~dy~ 101 (133)
....++++...|+++|.+.+..+.. +.. ..-.+..+++...++..|.+-+
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~~~l~dgD 71 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTESAALKDGD 71 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCCcCcCCCC
Confidence 3456778888999999999977651 111 1123556777766666676654
No 164
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=64.72 E-value=9.1 Score=30.29 Aligned_cols=66 Identities=15% Similarity=0.031 Sum_probs=51.6
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEE--eCCcccCc---cccccccccEEeEEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADL--LKFPFFFF---EEVLSFFWFVVVGVIF 109 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~--~~gk~L~d---~~tL~dy~~~~~~~~~ 109 (133)
+-||.++|++...+..+.+|...++..++...|..++-..+. |--+.+.+ .++|...+++.-+++.
T Consensus 213 lQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~li 283 (290)
T KOG2689|consen 213 LQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLI 283 (290)
T ss_pred EEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchhee
Confidence 778999999999999999999999999999998877666665 44444443 3688888876655443
No 165
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=63.02 E-value=3.2 Score=25.60 Aligned_cols=37 Identities=19% Similarity=0.217 Sum_probs=24.9
Q ss_pred cccCCCCCCeEEEeCCEECCCCCCccccccc-cccccc
Q 040111 3 DKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHL 39 (133)
Q Consensus 3 ~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L 39 (133)
+++|+.+++=.|.|++|.|+-...+.--|+. ++.+.|
T Consensus 28 ~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 28 KKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp HHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred HHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 5688888888999999999988899899998 888764
No 166
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=62.60 E-value=9.5 Score=23.92 Aligned_cols=33 Identities=24% Similarity=0.182 Sum_probs=28.7
Q ss_pred CceeeccccCcHHHHHHHhhhhcCC--CCCceEEE
Q 040111 53 NITLEVESSDTIDNVKAKIQDKKRI--PPPAEADL 85 (133)
Q Consensus 53 ~~~l~V~~~~tV~~LK~~I~~~~gI--p~~~q~L~ 85 (133)
..++.|++++|+.++-.++.++.++ .|....|+
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 5788999999999999999999998 56667774
No 167
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=62.22 E-value=1.1 Score=36.47 Aligned_cols=34 Identities=35% Similarity=0.437 Sum_probs=27.5
Q ss_pred CCeEEEeCCEECCCCCCccccccc---cccccccccc
Q 040111 10 GQQRSIFAGKQLEDGRTLADYKIQ---ESTLHLGWRA 43 (133)
Q Consensus 10 ~~Q~Li~~gk~L~D~~tL~~ygI~---~stl~L~~~~ 43 (133)
..|||+|+||.|.|+..|.|.=++ ....||+...
T Consensus 52 ~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlvcns 88 (391)
T KOG4583|consen 52 LDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLVCNS 88 (391)
T ss_pred hhHHHHhhccccccchhHHHHHHHHHHHHHHHHhcCC
Confidence 469999999999999999998876 4466665544
No 168
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=61.65 E-value=19 Score=22.72 Aligned_cols=36 Identities=19% Similarity=0.141 Sum_probs=30.1
Q ss_pred CCCCceeeccccCcHHHHHHHhhhhcCCCC--CceEEE
Q 040111 50 DPQNITLEVESSDTIDNVKAKIQDKKRIPP--PAEADL 85 (133)
Q Consensus 50 ~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~--~~q~L~ 85 (133)
++...++.|++++|..++-..+.++.++.. ....|+
T Consensus 14 ~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~ 51 (90)
T smart00314 14 GGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLV 51 (90)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEE
Confidence 456688999999999999999999999864 566665
No 169
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=59.65 E-value=4.9 Score=30.23 Aligned_cols=29 Identities=14% Similarity=0.290 Sum_probs=21.6
Q ss_pred CCCCceeeccccCcHHHHHHHhhhhcCCC
Q 040111 50 DPQNITLEVESSDTIDNVKAKIQDKKRIP 78 (133)
Q Consensus 50 ~g~~~~l~V~~~~tV~~LK~~I~~~~gIp 78 (133)
.|-++.+.|.+++|..++|.+|+++.|++
T Consensus 131 hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~ 159 (213)
T PF14533_consen 131 HGIPFLFVVKPGETFSDTKERLQKRLGVS 159 (213)
T ss_dssp EEEEEEEEEETT--HHHHHHHHHHHH---
T ss_pred CCCCEEEEeeCCCcHHHHHHHHHHHhCCC
Confidence 46678889999999999999999999987
No 170
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=55.11 E-value=26 Score=21.10 Aligned_cols=41 Identities=15% Similarity=-0.070 Sum_probs=32.4
Q ss_pred eeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccc
Q 040111 55 TLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFW 101 (133)
Q Consensus 55 ~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~ 101 (133)
.++++.+.|..+||.++.. +.=.++++|=+..++..|.+-+
T Consensus 9 ~~~~~~~~tl~~lr~~~k~------~~DI~I~NGF~~~~d~~L~e~D 49 (57)
T PF14453_consen 9 EIETEENTTLFELRKESKP------DADIVILNGFPTKEDIELKEGD 49 (57)
T ss_pred EEEcCCCcCHHHHHHhhCC------CCCEEEEcCcccCCccccCCCC
Confidence 4667788899999987654 3337899999999998888764
No 171
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=54.89 E-value=18 Score=21.85 Aligned_cols=49 Identities=10% Similarity=-0.033 Sum_probs=36.2
Q ss_pred CceeeccccCcHHHHHHHhhhhcC-C-CCCceEEEeCCcccCc---cccccccc
Q 040111 53 NITLEVESSDTIDNVKAKIQDKKR-I-PPPAEADLLKFPFFFF---EEVLSFFW 101 (133)
Q Consensus 53 ~~~l~V~~~~tV~~LK~~I~~~~g-I-p~~~q~L~~~gk~L~d---~~tL~dy~ 101 (133)
...+.+....||.+|.+.+.++.+ . ......+..+|+...+ +.+|.+=+
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~~~~~~~l~~gD 66 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPDDGLDTPLKDGD 66 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGGGTTTSBEETTE
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCCccCCcCcCCCC
Confidence 445677889999999999988764 2 3466677789988888 66665543
No 172
>PF09469 Cobl: Cordon-bleu ubiquitin-like domain; InterPro: IPR019025 The Cordon-bleu protein domain is highly conserved among vertebrates. The sequence contains three repeated lysine, arginine, and proline-rich regions, the KKRAP motif. The exact function of the protein is unknown but it is thought to be involved in mid-brain neural tube closure. It is expressed specifically in the node []. ; PDB: 2DAJ_A.
Probab=54.76 E-value=9.3 Score=24.52 Aligned_cols=36 Identities=14% Similarity=-0.022 Sum_probs=22.8
Q ss_pred HhhhhcCCCCCceEEE---eCCcccCccccccccccEEe
Q 040111 70 KIQDKKRIPPPAEADL---LKFPFFFFEEVLSFFWFVVV 105 (133)
Q Consensus 70 ~I~~~~gIp~~~q~L~---~~gk~L~d~~tL~dy~~~~~ 105 (133)
.|.+++.+.|+.-.|. -++.+|+-.++|.+|+|-++
T Consensus 2 ~IC~KCEfdp~htvLLrD~~s~e~LdLsKSLndlGirEL 40 (79)
T PF09469_consen 2 AICEKCEFDPEHTVLLRDYQSGEELDLSKSLNDLGIREL 40 (79)
T ss_dssp HHHHHTT--TTSEEEES-SS---B--TTS-HHHHT-SEE
T ss_pred ccccccccCcceEEEeecCCCCCcccccccHHHhhHHHH
Confidence 5888999999999988 46778888999999998654
No 173
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=54.64 E-value=28 Score=22.11 Aligned_cols=41 Identities=20% Similarity=0.197 Sum_probs=34.3
Q ss_pred ccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEE
Q 040111 45 FCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADL 85 (133)
Q Consensus 45 ~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~ 85 (133)
.+..++.+...++|.|..|+.+.-.+.-...|+.|+.-..+
T Consensus 3 r~~LPnqQrT~V~vrpG~tl~daL~KaLk~R~l~pe~C~V~ 43 (74)
T cd01816 3 RVFLPNKQRTVVNVRPGMTLRDALAKALKVRGLQPECCAVF 43 (74)
T ss_pred eEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCChhHeEEE
Confidence 45567888889999999999999999999999997755554
No 174
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=54.60 E-value=6.6 Score=26.28 Aligned_cols=18 Identities=11% Similarity=-0.256 Sum_probs=16.9
Q ss_pred EEEeCCcccCcccccccc
Q 040111 83 ADLLKFPFFFFEEVLSFF 100 (133)
Q Consensus 83 ~L~~~gk~L~d~~tL~dy 100 (133)
.|-|+|++|..+.+|+||
T Consensus 3 ~LW~aGK~l~~~k~l~dy 20 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY 20 (98)
T ss_pred eEEeccccccCCCcHHHh
Confidence 578999999999999999
No 175
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=53.19 E-value=46 Score=19.69 Aligned_cols=49 Identities=10% Similarity=-0.033 Sum_probs=32.2
Q ss_pred CCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccC----ccccccccccEE
Q 040111 50 DPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFF----FEEVLSFFWFVV 104 (133)
Q Consensus 50 ~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~----d~~tL~dy~~~~ 104 (133)
+|+. ++++...|+.++-.. .++++..-.+..+|..+. ++..|++=+-.+
T Consensus 6 NG~~--~~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~~~~~~~l~~gD~ve 58 (66)
T PRK05659 6 NGEP--RELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRSQHASTALREGDVVE 58 (66)
T ss_pred CCeE--EEcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHHHcCcccCCCCCEEE
Confidence 4554 455667888877654 688888888888886555 555566554333
No 176
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=52.23 E-value=29 Score=23.34 Aligned_cols=44 Identities=9% Similarity=0.053 Sum_probs=31.1
Q ss_pred eccccCcHHHHHHHhhhhcCCCCCceE-EEeCCcccCcccccccc
Q 040111 57 EVESSDTIDNVKAKIQDKKRIPPPAEA-DLLKFPFFFFEEVLSFF 100 (133)
Q Consensus 57 ~V~~~~tV~~LK~~I~~~~gIp~~~q~-L~~~gk~L~d~~tL~dy 100 (133)
=|+.+.||+++...|..+..+++++=- |+.++.....+.++++.
T Consensus 38 Lvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~el 82 (104)
T PF02991_consen 38 LVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGEL 82 (104)
T ss_dssp EEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHHH
T ss_pred EEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHHH
Confidence 368899999999999999999887533 44566555566777654
No 177
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=50.85 E-value=14 Score=26.76 Aligned_cols=44 Identities=16% Similarity=0.235 Sum_probs=29.8
Q ss_pred Cceeeccc-cCcHHHHHHHhhhhcCCCCCceEEEeCCcccCcccccccc
Q 040111 53 NITLEVES-SDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFF 100 (133)
Q Consensus 53 ~~~l~V~~-~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy 100 (133)
.+.++++. .+.+..+++.-++...++.+ +..|+.++...|++||
T Consensus 76 ri~lele~~~~~ie~I~~iCee~lpf~y~----i~~G~f~r~~~TvtDY 120 (153)
T PF02505_consen 76 RIILELEDEEDVIEKIREICEEVLPFGYD----IKEGKFIRTKPTVTDY 120 (153)
T ss_pred EEEEEecCcHHHHHHHHHHHHHhCCCceE----eeeeEEeccCCchhhh
Confidence 35677777 56666666555444433332 3579999999999999
No 178
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=49.07 E-value=35 Score=22.27 Aligned_cols=39 Identities=8% Similarity=0.048 Sum_probs=28.8
Q ss_pred CCCceeecc-----ccCcHHHHHHHhhhhcCCCC-CceEEEeCCc
Q 040111 51 PQNITLEVE-----SSDTIDNVKAKIQDKKRIPP-PAEADLLKFP 89 (133)
Q Consensus 51 g~~~~l~V~-----~~~tV~~LK~~I~~~~gIp~-~~q~L~~~gk 89 (133)
|..+.+.++ ++.+..+|+++|++...+++ ....|.|...
T Consensus 9 ~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~De 53 (91)
T cd06398 9 GTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDE 53 (91)
T ss_pred CEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECC
Confidence 444555555 46899999999999999988 5566666443
No 179
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=48.31 E-value=36 Score=22.18 Aligned_cols=32 Identities=22% Similarity=0.165 Sum_probs=28.6
Q ss_pred ceeeccccCcHHHHHHHhhhhcCC-CCCceEEE
Q 040111 54 ITLEVESSDTIDNVKAKIQDKKRI-PPPAEADL 85 (133)
Q Consensus 54 ~~l~V~~~~tV~~LK~~I~~~~gI-p~~~q~L~ 85 (133)
.++-|.|.+|+++|=++++++..+ .|++..|.
T Consensus 16 KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LF 48 (87)
T cd01776 16 KTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLF 48 (87)
T ss_pred eeeecCCCCcHHHHHHHHHHHhccCChhheeEE
Confidence 578899999999999999999997 68888876
No 180
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=48.29 E-value=14 Score=24.54 Aligned_cols=39 Identities=18% Similarity=0.321 Sum_probs=31.7
Q ss_pred ccCCCCCCeEEEeCCEECCCCCCccccccc-ccccccccc
Q 040111 4 KEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWR 42 (133)
Q Consensus 4 ~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~ 42 (133)
+.|=..+..|+.|.|+..+-++|-.+++.. +..|..+..
T Consensus 57 rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~e 96 (103)
T COG5227 57 RQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTE 96 (103)
T ss_pred HhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHH
Confidence 456667788999999999999999999998 877765443
No 181
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=47.34 E-value=29 Score=22.34 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=25.5
Q ss_pred CCCCceeeccc--cCcHHHHHHHhhhhcCCC
Q 040111 50 DPQNITLEVES--SDTIDNVKAKIQDKKRIP 78 (133)
Q Consensus 50 ~g~~~~l~V~~--~~tV~~LK~~I~~~~gIp 78 (133)
+|.+..+.+++ +.+-.+|++.|+.+.+++
T Consensus 8 ~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 8 NGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred CCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 56677888888 669999999999999999
No 182
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=46.59 E-value=63 Score=19.33 Aligned_cols=57 Identities=9% Similarity=0.077 Sum_probs=34.6
Q ss_pred CCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccC----ccccccccccEEeEEEEeCc
Q 040111 50 DPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFF----FEEVLSFFWFVVVGVIFCGC 112 (133)
Q Consensus 50 ~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~----d~~tL~dy~~~~~~~~~~~~ 112 (133)
+|+.+ +++...|+.+|-+. .++++..-.+-.++..+. +...|.+-+-.++--.+.||
T Consensus 6 Ng~~~--~~~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~r~~w~~~~L~~gD~Ieii~~v~GG 66 (66)
T PRK08053 6 NDQPM--QCAAGQTVHELLEQ----LNQLQPGAALAINQQIIPREQWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_pred CCeEE--EcCCCCCHHHHHHH----cCCCCCcEEEEECCEEeChHHcCccccCCCCEEEEEEEccCC
Confidence 45553 44566789888865 455555566777888776 33456666655444444554
No 183
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=45.17 E-value=80 Score=25.66 Aligned_cols=63 Identities=13% Similarity=-0.082 Sum_probs=46.2
Q ss_pred CCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccC----ccccccccccEEeEEEEeCceeeeee
Q 040111 50 DPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFF----FEEVLSFFWFVVVGVIFCGCRVNFWN 118 (133)
Q Consensus 50 ~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~----d~~tL~dy~~~~~~~~~~~~~~~~~~ 118 (133)
||+. ++++.+.|+.+|-.. .+++++...+..+|+.+. ++..|.+-+-.++--++.||...-.+
T Consensus 6 NGk~--~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVpr~~w~~t~LkeGD~IEII~~VgGGs~~~~~ 72 (326)
T PRK11840 6 NGEP--RQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVPRSEYGQVALEEGDELEIVHFVGGGSDLVAD 72 (326)
T ss_pred CCEE--EecCCCCcHHHHHHH----cCCCCCeEEEEECCEECCHHHcCccccCCCCEEEEEEEecCCCCCCCC
Confidence 4554 445567788877654 689999999999999998 45689998877777777777664433
No 184
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=44.82 E-value=18 Score=25.99 Aligned_cols=44 Identities=14% Similarity=0.193 Sum_probs=29.3
Q ss_pred CceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCcccccccc
Q 040111 53 NITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFF 100 (133)
Q Consensus 53 ~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy 100 (133)
.+.+++...+.+.++++.-.+..-++-+ +..|+.++...|++||
T Consensus 75 rI~le~~~~~~i~~I~eiC~e~~pF~y~----i~~g~f~r~~~TvtDY 118 (150)
T TIGR03260 75 RIILELEDEDIVEEIEEICKEMLPFGYE----VRVGKFLRTKPTVTDY 118 (150)
T ss_pred EEEEEecCHHHHHHHHHHHHhhCCCceE----eeeeeEeecCCchhhh
Confidence 3456666666666666554444443333 4678899999999999
No 185
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=44.54 E-value=38 Score=23.04 Aligned_cols=45 Identities=16% Similarity=0.085 Sum_probs=33.2
Q ss_pred eeccccCcHHHHHHHhhhhcCCCCCceEEEe-CCcccCcccccccc
Q 040111 56 LEVESSDTIDNVKAKIQDKKRIPPPAEADLL-KFPFFFFEEVLSFF 100 (133)
Q Consensus 56 l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~-~gk~L~d~~tL~dy 100 (133)
.-|+.+.||+++...|..+..+++++--.+| ++.....+.++++.
T Consensus 45 flVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~l 90 (112)
T cd01611 45 YLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQL 90 (112)
T ss_pred EEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHH
Confidence 4588999999999999999999888755444 55444456666553
No 186
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=42.91 E-value=83 Score=19.65 Aligned_cols=47 Identities=13% Similarity=0.040 Sum_probs=29.1
Q ss_pred CceeeccccCcHHHHHHHhhhhcC-----CC------CCceEEEeCCcccCccc--ccccc
Q 040111 53 NITLEVESSDTIDNVKAKIQDKKR-----IP------PPAEADLLKFPFFFFEE--VLSFF 100 (133)
Q Consensus 53 ~~~l~V~~~~tV~~LK~~I~~~~g-----Ip------~~~q~L~~~gk~L~d~~--tL~dy 100 (133)
...++++ ..||.+|.+.+.++.+ +- -....+..+|+....+. +|++-
T Consensus 17 ~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~~~l~dg 76 (88)
T TIGR01687 17 SEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLGTELKDG 76 (88)
T ss_pred eEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCCCCCCCC
Confidence 4566765 8899999999988763 10 11244555666655444 55554
No 187
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=42.33 E-value=53 Score=20.98 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=30.9
Q ss_pred CceeeccccCcHHHHHHHhhhhcCCCCCceEEEe--CCcccCcc
Q 040111 53 NITLEVESSDTIDNVKAKIQDKKRIPPPAEADLL--KFPFFFFE 94 (133)
Q Consensus 53 ~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~--~gk~L~d~ 94 (133)
.....|.. .+..+|+.+..++.+++.+.-+|+. .|...+|+
T Consensus 13 ~~k~Gv~A-~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddE 55 (78)
T PF02017_consen 13 SVKKGVAA-SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDE 55 (78)
T ss_dssp SCEEEEEE-SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSC
T ss_pred CceEeEEc-CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccH
Confidence 34455544 5799999999999999977666664 89999876
No 188
>KOG4165 consensus Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism]
Probab=40.77 E-value=11 Score=30.95 Aligned_cols=15 Identities=40% Similarity=0.457 Sum_probs=12.0
Q ss_pred ceeeeeecccccCcc
Q 040111 112 CRVNFWNASLRFDPE 126 (133)
Q Consensus 112 ~~~~~~~~~~~~~~~ 126 (133)
+...|||||+||--+
T Consensus 355 Sa~vf~NASTRFaDG 369 (433)
T KOG4165|consen 355 SACVFHNASTRFADG 369 (433)
T ss_pred hhheeeccccccccc
Confidence 567899999999643
No 189
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=39.99 E-value=64 Score=21.54 Aligned_cols=37 Identities=16% Similarity=0.132 Sum_probs=28.7
Q ss_pred CCCCCceeeccccCcHHHHHHHhhhhcCCCC-CceEEE
Q 040111 49 PDPQNITLEVESSDTIDNVKAKIQDKKRIPP-PAEADL 85 (133)
Q Consensus 49 ~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~-~~q~L~ 85 (133)
.++...++..+.++||+++-.+++.+..+++ +..+|+
T Consensus 10 ~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~ 47 (97)
T cd01775 10 SDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLS 47 (97)
T ss_pred cCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEE
Confidence 3555678899999999999999999988765 444443
No 190
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=38.54 E-value=9.1 Score=30.08 Aligned_cols=34 Identities=29% Similarity=0.342 Sum_probs=24.2
Q ss_pred cCCCCCCeEEEe----CCEECCCCCCccccccc-ccccc
Q 040111 5 EGIPPGQQRSIF----AGKQLEDGRTLADYKIQ-ESTLH 38 (133)
Q Consensus 5 ~gip~~~Q~Li~----~gk~L~D~~tL~~ygI~-~stl~ 38 (133)
..+-+.++|+-+ .|++|.|+.+|.+|+.. +.++.
T Consensus 37 ~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~ 75 (297)
T KOG1639|consen 37 LKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIY 75 (297)
T ss_pred hccCccchhheeeccCCCccccchhHHHHhccCCCCEEE
Confidence 344554455543 38899999999999999 85554
No 191
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=38.20 E-value=2.5 Score=21.55 Aligned_cols=14 Identities=29% Similarity=0.911 Sum_probs=10.4
Q ss_pred eeeeecccccCccc
Q 040111 114 VNFWNASLRFDPEN 127 (133)
Q Consensus 114 ~~~~~~~~~~~~~~ 127 (133)
+.++.+++++||.|
T Consensus 21 ~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 21 LEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHCcCC
Confidence 45677888888875
No 192
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=38.03 E-value=68 Score=20.47 Aligned_cols=45 Identities=16% Similarity=0.094 Sum_probs=33.0
Q ss_pred CCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEe-CCcccCccccccc
Q 040111 51 PQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLL-KFPFFFFEEVLSF 99 (133)
Q Consensus 51 g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~-~gk~L~d~~tL~d 99 (133)
+..+....++..||+++= |..|+|....-++. +|+.-.-++.+++
T Consensus 22 ~~~~~~~~~~~~tvkd~I----EsLGVP~tEV~~i~vNG~~v~~~~~~~~ 67 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVI----ESLGVPHTEVGLILVNGRPVDFDYRLKD 67 (81)
T ss_pred CCceEEecCCCCcHHHHH----HHcCCChHHeEEEEECCEECCCcccCCC
Confidence 345677888889988765 34899999888774 8887776655553
No 193
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein. RASSF1 (also known as RASSF3 and NORE1) is a tumour suppressor protein with a C-terminal Ras-associating (RA) domain that binds Ras. RASSF1 also binds the proapoptotic protein kinase MST1 and is thus thought to regulate the proapoptotic signalling pathway. RASSF1 also associates with microtubule-associated proteins like MAP1B and regulates tubulin polymerization. RASSF1 also binds CDC20 and regulates mitosis by inhibiting the anaphase-promoting complex and preventing degradation of cyclin A and cyclin B until the spindle checkpoint becomes fully operational.
Probab=37.11 E-value=1e+02 Score=20.54 Aligned_cols=37 Identities=22% Similarity=0.230 Sum_probs=29.1
Q ss_pred CCCCCceeeccccCcHHHHHHHhhhhcCCC--CCceEEE
Q 040111 49 PDPQNITLEVESSDTIDNVKAKIQDKKRIP--PPAEADL 85 (133)
Q Consensus 49 ~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp--~~~q~L~ 85 (133)
+.+....+.|++++|+.++-+.+-++..|. |....|+
T Consensus 14 p~~s~k~v~IsS~tTt~eVI~~LL~KF~v~~nP~kFALY 52 (96)
T cd01778 14 PKDTAKHLHISSKTTVREVIEALLKKFLVVDNPRKFALF 52 (96)
T ss_pred cCCceeEEEEecCCcHHHHHHHHHHhheeccCCcceEEE
Confidence 456677899999999999999999998864 4445554
No 194
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=36.63 E-value=52 Score=20.86 Aligned_cols=43 Identities=21% Similarity=0.223 Sum_probs=31.8
Q ss_pred CCceeeccccCcHHHHHHHhhhhcCCCCCceEEE--eCCcccCccc
Q 040111 52 QNITLEVESSDTIDNVKAKIQDKKRIPPPAEADL--LKFPFFFFEE 95 (133)
Q Consensus 52 ~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~--~~gk~L~d~~ 95 (133)
++....|..+ +..+|+.+..++.++|...-+|+ -.|...+|+.
T Consensus 10 r~~k~GV~A~-sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEe 54 (74)
T smart00266 10 RNVRKGVAAS-SLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEE 54 (74)
T ss_pred CCeeEEEEcC-CHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHH
Confidence 3444555444 69999999999999986555554 5899998863
No 195
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=36.07 E-value=43 Score=21.16 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=17.8
Q ss_pred ceeecc-ccCcHHHHHHHhhhhcCC
Q 040111 54 ITLEVE-SSDTIDNVKAKIQDKKRI 77 (133)
Q Consensus 54 ~~l~V~-~~~tV~~LK~~I~~~~gI 77 (133)
-.+..+ ...+|.+||..|.++.++
T Consensus 12 ~~i~fdG~~Isv~dLKr~I~~~~~l 36 (74)
T PF08783_consen 12 DTITFDGTSISVFDLKREIIEKKKL 36 (74)
T ss_dssp EEEEESSSEEEHHHHHHHHHHHHT-
T ss_pred cEEEECCCeeEHHHHHHHHHHHhCC
Confidence 345555 468999999999888765
No 196
>KOG4261 consensus Talin [Cytoskeleton]
Probab=35.80 E-value=31 Score=31.35 Aligned_cols=75 Identities=24% Similarity=0.145 Sum_probs=56.9
Q ss_pred CEECCCCCCccccccc-cccccccc--cccccCCCCCCCceeeccccCcHHHHHHHhhhhcCCC-CCceEEEeCCcccC
Q 040111 18 GKQLEDGRTLADYKIQ-ESTLHLGW--RADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIP-PPAEADLLKFPFFF 92 (133)
Q Consensus 18 gk~L~D~~tL~~ygI~-~stl~L~~--~~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp-~~~q~L~~~gk~L~ 92 (133)
|-.|+..++|.+|=.. +.++.-.- +...|+.++|..-++.|+.+.+|.+|.--|..+.||. -+...|.-....++
T Consensus 58 ~~wle~grt~~~y~~~n~d~~ey~~k~r~lkvrmldg~vkti~vd~sq~v~~L~~~ic~~igItnyeeyslvre~~~~~ 136 (1003)
T KOG4261|consen 58 GIWLEAGRTLDYYMLRNGDTLEYKRKQRPLKVRMLDGAVKTIMVDDSQPVSQLMMTICNKIGITNYEEYSLVREDIEEQ 136 (1003)
T ss_pred ceeecCCccHHHHHHhcccccchhhhcccceeeecccccceeeecccccHHHHHHHHHhccCccchhhhhhhHHHHHHh
Confidence 4568889999988888 77776432 3389999999999999999999999999999999974 33444443333333
No 197
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=35.43 E-value=39 Score=21.55 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=17.3
Q ss_pred ceeeccccCcHHHHHHHhhhhc
Q 040111 54 ITLEVESSDTIDNVKAKIQDKK 75 (133)
Q Consensus 54 ~~l~V~~~~tV~~LK~~I~~~~ 75 (133)
++++++.+.|+.++|+.+-+.-
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A 23 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEA 23 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHG
T ss_pred eEEEccCcCcHHHHHHHHHHHH
Confidence 4688999999999999776653
No 198
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=34.55 E-value=74 Score=20.57 Aligned_cols=38 Identities=8% Similarity=0.024 Sum_probs=31.1
Q ss_pred CCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeC
Q 040111 50 DPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLK 87 (133)
Q Consensus 50 ~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~ 87 (133)
+|.+..+..+..-|-+.|+++|+....+|+...-+.|-
T Consensus 8 ~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYi 45 (82)
T cd06397 8 LGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYI 45 (82)
T ss_pred CCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEE
Confidence 45666677777788999999999999999987777773
No 199
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=34.34 E-value=81 Score=20.56 Aligned_cols=42 Identities=14% Similarity=0.007 Sum_probs=34.3
Q ss_pred CCCceeeccccCcHHHHHHHhhhhcCCCCCceE-EEeCCcccC
Q 040111 51 PQNITLEVESSDTIDNVKAKIQDKKRIPPPAEA-DLLKFPFFF 92 (133)
Q Consensus 51 g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~-L~~~gk~L~ 92 (133)
.....+.|++..|=.++|+.|+...|+++...+ +...|+.-.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~kr 62 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKTKR 62 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCceee
Confidence 356789999999999999999999999987776 446666543
No 200
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=33.98 E-value=17 Score=28.52 Aligned_cols=14 Identities=29% Similarity=0.598 Sum_probs=11.9
Q ss_pred cEEeEEEEeCceee
Q 040111 102 FVVVGVIFCGCRVN 115 (133)
Q Consensus 102 ~~~~~~~~~~~~~~ 115 (133)
+-++|+|+||||+-
T Consensus 123 yDVLGDVVCGGFAm 136 (278)
T COG1348 123 YDVLGDVVCGGFAM 136 (278)
T ss_pred EeccCceeecceee
Confidence 37889999999974
No 201
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=33.54 E-value=42 Score=28.44 Aligned_cols=63 Identities=16% Similarity=0.041 Sum_probs=50.7
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEE--eCCcccCcc---ccccccccEEeE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADL--LKFPFFFFE---EVLSFFWFVVVG 106 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~--~~gk~L~d~---~tL~dy~~~~~~ 106 (133)
+.||.++|.+++-..+.++-...++.-+....++.....-|- |--+++.++ ++|.+.++.+..
T Consensus 317 LqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~psa 384 (506)
T KOG2507|consen 317 LQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSA 384 (506)
T ss_pred EEEecCCccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHhccCCcc
Confidence 788999999998888888888899999998887776666654 888888764 688888875554
No 202
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=33.53 E-value=73 Score=21.87 Aligned_cols=39 Identities=10% Similarity=0.078 Sum_probs=34.1
Q ss_pred ceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccC
Q 040111 54 ITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFF 92 (133)
Q Consensus 54 ~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~ 92 (133)
....|++++|++.+-..|....++++.+|..+|=+.-+.
T Consensus 47 ~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sFA 85 (116)
T KOG3439|consen 47 SKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSFA 85 (116)
T ss_pred ceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCccC
Confidence 346788999999999999999999999999998776665
No 203
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.67 E-value=69 Score=26.33 Aligned_cols=49 Identities=8% Similarity=-0.186 Sum_probs=34.7
Q ss_pred eeccccCcHHHHHHHhhhhcCCCCCceEEEe---CCcccCccccccccccEEeE
Q 040111 56 LEVESSDTIDNVKAKIQDKKRIPPPAEADLL---KFPFFFFEEVLSFFWFVVVG 106 (133)
Q Consensus 56 l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~---~gk~L~d~~tL~dy~~~~~~ 106 (133)
..+.-.-||.++|.++..+-|+.+..++|+| .|+.. +..=++|++..+.
T Consensus 352 ~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~--~~ss~~~N~~L~~ 403 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTD--DFSSSDYNMPLHY 403 (418)
T ss_pred eEEEeehHHHHHHHHhccccccccceeEEEEEcccCccC--CccccCCCCcceE
Confidence 3455667899999999999999999999997 34433 2233366654443
No 204
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=31.30 E-value=53 Score=21.27 Aligned_cols=41 Identities=15% Similarity=-0.011 Sum_probs=34.3
Q ss_pred CCceeeccccCcHHHHHHHhhhhcCCCCCceE-EEeCCcccC
Q 040111 52 QNITLEVESSDTIDNVKAKIQDKKRIPPPAEA-DLLKFPFFF 92 (133)
Q Consensus 52 ~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~-L~~~gk~L~ 92 (133)
...++.|+++.|=.++|+.|+...|+++...+ +.+.|+.-.
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR 62 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKR 62 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceE
Confidence 45788999999999999999999999987766 447777654
No 205
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=31.19 E-value=48 Score=21.18 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=18.3
Q ss_pred ceeeccccCcHHHHHHHhhhhc
Q 040111 54 ITLEVESSDTIDNVKAKIQDKK 75 (133)
Q Consensus 54 ~~l~V~~~~tV~~LK~~I~~~~ 75 (133)
+.+++..+.|+.++|+.+-+.-
T Consensus 2 i~l~v~~~aTl~~IK~~lw~~A 23 (78)
T smart00143 2 VTLRVLREATLSTIKHELFKQA 23 (78)
T ss_pred eeEEccccccHHHHHHHHHHHH
Confidence 4678899999999999887663
No 206
>KOG0688 consensus Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis]
Probab=30.76 E-value=22 Score=29.10 Aligned_cols=61 Identities=20% Similarity=0.212 Sum_probs=35.5
Q ss_pred ceeeccccCcHHHHHHHhhhhcC----CCCCceEEEeCCcccCccccccccc-cEEeE-EEEeCcee
Q 040111 54 ITLEVESSDTIDNVKAKIQDKKR----IPPPAEADLLKFPFFFFEEVLSFFW-FVVVG-VIFCGCRV 114 (133)
Q Consensus 54 ~~l~V~~~~tV~~LK~~I~~~~g----Ip~~~q~L~~~gk~L~d~~tL~dy~-~~~~~-~~~~~~~~ 114 (133)
+++-++|.+.|+..-++++++.| |-..--||.-.|..-.-..+|.-|+ ++++| +++||--+
T Consensus 31 isliippkdqisr~skmLadeygtasnikSrVnRlsvl~AitSaq~rLklynkvPpnglvly~gti~ 97 (431)
T KOG0688|consen 31 ISLIIPPKDQISRVSKMLADEYGTASNIKSRVNRLSVLGAITSAQSRLKLYNKVPPNGLVLYTGTIV 97 (431)
T ss_pred EEEEeCchHHHHHHHHHHHHhhhhhhhhhhhhcchhhhhhhhhhhhhhHHhccCCCCceEEEeeeeE
Confidence 66777788888888888887765 3333334433333334445566664 44455 66665433
No 207
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=30.65 E-value=54 Score=21.10 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=24.8
Q ss_pred eeccccCcHHHHHHHhhhhcC-------CCCCceEEEeCCc
Q 040111 56 LEVESSDTIDNVKAKIQDKKR-------IPPPAEADLLKFP 89 (133)
Q Consensus 56 l~V~~~~tV~~LK~~I~~~~g-------Ip~~~q~L~~~gk 89 (133)
++++++.|..++-..+.++.. +..+.-.|+..+.
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~p 41 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSP 41 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSS
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCC
Confidence 578899999999999999843 3345555665554
No 208
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=30.56 E-value=71 Score=20.41 Aligned_cols=42 Identities=14% Similarity=0.085 Sum_probs=31.3
Q ss_pred CCceeeccccCcHHHHHHHhhhhcCCCCCceEEE--eCCcccCcc
Q 040111 52 QNITLEVESSDTIDNVKAKIQDKKRIPPPAEADL--LKFPFFFFE 94 (133)
Q Consensus 52 ~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~--~~gk~L~d~ 94 (133)
++....|..+ +..+|+.+..++.++|...-+|+ -.|.+.+|+
T Consensus 12 r~~k~GV~A~-sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddE 55 (78)
T cd01615 12 RSRKKGVAAS-SLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDE 55 (78)
T ss_pred CCeeEEEEcC-CHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccH
Confidence 4445555444 69999999999999965555554 589999886
No 209
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=29.45 E-value=61 Score=17.56 Aligned_cols=13 Identities=15% Similarity=0.294 Sum_probs=10.1
Q ss_pred CCCeEEEeCCEEC
Q 040111 9 PGQQRSIFAGKQL 21 (133)
Q Consensus 9 ~~~Q~Li~~gk~L 21 (133)
..+.+++|+|+..
T Consensus 5 ~~qLTIfY~G~V~ 17 (36)
T PF06200_consen 5 TAQLTIFYGGQVC 17 (36)
T ss_pred CCcEEEEECCEEE
Confidence 3567889999974
No 210
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=29.11 E-value=84 Score=20.12 Aligned_cols=50 Identities=16% Similarity=-0.029 Sum_probs=33.8
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceE--EEeCCcccCccc
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEA--DLLKFPFFFFEE 95 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~--L~~~gk~L~d~~ 95 (133)
..|+..+ +.....|.. .+..+|+.+..++.+++.+.-+ |.-.|...+++.
T Consensus 5 fkV~~~~-r~~k~GV~A-~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~Ee 56 (78)
T cd06539 5 FRVSNHD-RSSRRGVMA-SSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEE 56 (78)
T ss_pred EEEecCC-CCceEEEEe-cCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHH
Confidence 3344443 333444444 4699999999999999755444 567999998763
No 211
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=26.51 E-value=1.1e+02 Score=26.60 Aligned_cols=59 Identities=22% Similarity=0.174 Sum_probs=37.7
Q ss_pred CCCCceeeccccCcHHHHHHHhhhhc--CCC------CCceEEEe--C--Cc-ccCcc-------------ccccccccE
Q 040111 50 DPQNITLEVESSDTIDNVKAKIQDKK--RIP------PPAEADLL--K--FP-FFFFE-------------EVLSFFWFV 103 (133)
Q Consensus 50 ~g~~~~l~V~~~~tV~~LK~~I~~~~--gIp------~~~q~L~~--~--gk-~L~d~-------------~tL~dy~~~ 103 (133)
....+.+.|=..|||.++|++|-+.. +.| +++.-|.+ + |+ .|+|+ .||++|+++
T Consensus 200 ~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~ 279 (539)
T PF08337_consen 200 GSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVP 279 (539)
T ss_dssp SSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--
T ss_pred CCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCC
Confidence 34557888889999999999999883 443 45555543 1 22 45543 368999987
Q ss_pred EeEEE
Q 040111 104 VVGVI 108 (133)
Q Consensus 104 ~~~~~ 108 (133)
+.+.+
T Consensus 280 dga~v 284 (539)
T PF08337_consen 280 DGATV 284 (539)
T ss_dssp TTEEE
T ss_pred CCceE
Confidence 66643
No 212
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=25.89 E-value=89 Score=25.06 Aligned_cols=46 Identities=11% Similarity=0.013 Sum_probs=34.6
Q ss_pred eeeccccCcHHHHHHHhhhhc--------------C-CCCCceEEEeCCcccCcccccccc
Q 040111 55 TLEVESSDTIDNVKAKIQDKK--------------R-IPPPAEADLLKFPFFFFEEVLSFF 100 (133)
Q Consensus 55 ~l~V~~~~tV~~LK~~I~~~~--------------g-Ip~~~q~L~~~gk~L~d~~tL~dy 100 (133)
.+....--.|..+..-|.++. . -|.+..-|+|+|+.|..+-||+..
T Consensus 251 rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTV 311 (331)
T PF11816_consen 251 RLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATV 311 (331)
T ss_pred eecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHH
Confidence 455555566777788888777 2 355566799999999999999877
No 213
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=24.63 E-value=9.9 Score=18.87 Aligned_cols=14 Identities=29% Similarity=0.897 Sum_probs=9.9
Q ss_pred eeeeecccccCccc
Q 040111 114 VNFWNASLRFDPEN 127 (133)
Q Consensus 114 ~~~~~~~~~~~~~~ 127 (133)
..++.++++.||.|
T Consensus 21 ~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 21 IEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHCcCC
Confidence 34567788888875
No 214
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.15 E-value=56 Score=27.99 Aligned_cols=43 Identities=14% Similarity=-0.035 Sum_probs=38.3
Q ss_pred ccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCcccccccccc
Q 040111 60 SSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWF 102 (133)
Q Consensus 60 ~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~ 102 (133)
..-|-.++...|+++.||+-+..+.+-+||++.-.+||.+=+.
T Consensus 58 L~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQgl 100 (568)
T KOG2561|consen 58 LHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGL 100 (568)
T ss_pred cccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhh
Confidence 3456778999999999999999999999999999999998875
No 215
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=23.90 E-value=1.3e+02 Score=19.05 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=29.5
Q ss_pred CCceeeccccCcHHHHHHHhhhhcCCCCCceEEE
Q 040111 52 QNITLEVESSDTIDNVKAKIQDKKRIPPPAEADL 85 (133)
Q Consensus 52 ~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~ 85 (133)
....+.|++..+=.++|+.|+..+|+.+...+-+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~ 48 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTL 48 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeE
Confidence 4678999999999999999999999988776643
No 216
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms. Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.
Probab=23.26 E-value=14 Score=30.59 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=19.0
Q ss_pred ceeeccccCcHHHHHHHhhhhcCCC
Q 040111 54 ITLEVESSDTIDNVKAKIQDKKRIP 78 (133)
Q Consensus 54 ~~l~V~~~~tV~~LK~~I~~~~gIp 78 (133)
+++-++|...|.++-+++.+..|..
T Consensus 23 isl~ipp~~~i~~v~~~l~~e~~~a 47 (403)
T TIGR03676 23 ISLYIPPDKQISDVVNQLRDEYSQA 47 (403)
T ss_pred EEEEeCCCCcHHHHHHHHHHHHhhh
Confidence 6677888888888888887776643
No 217
>PF11996 DUF3491: Protein of unknown function (DUF3491); InterPro: IPR021882 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 286 to 3225 amino acids in length. This protein is found associated with PF04488 from PFAM. This protein is found associated with PF04488 from PFAM.
Probab=23.06 E-value=42 Score=30.97 Aligned_cols=28 Identities=14% Similarity=0.003 Sum_probs=22.7
Q ss_pred ccCccccccccccEEeE-----EEEeCceeeee
Q 040111 90 FFFFEEVLSFFWFVVVG-----VIFCGCRVNFW 117 (133)
Q Consensus 90 ~L~d~~tL~dy~~~~~~-----~~~~~~~~~~~ 117 (133)
.+++-.++.||+|++.| .|+.||+++|=
T Consensus 45 r~~~a~syKdYkftv~GG~GGlTVqiGGaG~YN 77 (936)
T PF11996_consen 45 RIEQAYSYKDYKFTVRGGKGGLTVQIGGAGYYN 77 (936)
T ss_pred hHHHHHhhcceeEEEecCCCceEEEeCCceeee
Confidence 34556789999998776 89999999995
No 218
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=23.01 E-value=1.1e+02 Score=19.67 Aligned_cols=49 Identities=10% Similarity=-0.014 Sum_probs=33.4
Q ss_pred ccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCC----CceEEEeCCcccCccc
Q 040111 45 FCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPP----PAEADLLKFPFFFFEE 95 (133)
Q Consensus 45 ~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~----~~q~L~~~gk~L~d~~ 95 (133)
.|+.. .++....|..+ +..+|+.+..++.+++. -...|.-.|...+|+.
T Consensus 6 kV~~~-~r~~k~GV~A~-sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~VddEe 58 (80)
T cd06536 6 VVCNV-SRQKQHGVAAS-SLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDED 58 (80)
T ss_pred EEecC-CCCeeEeEEcC-CHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEccHH
Confidence 34443 34445555444 69999999999999983 3344556999998863
No 219
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=22.98 E-value=96 Score=23.19 Aligned_cols=48 Identities=17% Similarity=0.122 Sum_probs=26.6
Q ss_pred CCceeeccccCcHHHHHHHhhhhcCCCCC---ceEEE--eCCcc---cCccccccc
Q 040111 52 QNITLEVESSDTIDNVKAKIQDKKRIPPP---AEADL--LKFPF---FFFEEVLSF 99 (133)
Q Consensus 52 ~~~~l~V~~~~tV~~LK~~I~~~~gIp~~---~q~L~--~~gk~---L~d~~tL~d 99 (133)
+.+.+-|+.+.||.+|-..++.+.+++.+ ..||. ++++. +..+.++++
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~ 89 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISS 89 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGG
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhh
Confidence 45778899999999999999999998765 33333 45554 334555543
No 220
>PRK12792 flhA flagellar biosynthesis protein FlhA; Reviewed
Probab=22.49 E-value=2e+02 Score=25.84 Aligned_cols=62 Identities=6% Similarity=0.003 Sum_probs=46.2
Q ss_pred cCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEEeCceeeeeecccccCccce
Q 040111 61 SDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIFCGCRVNFWNASLRFDPENV 128 (133)
Q Consensus 61 ~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (133)
.+.+..++++++...|+.....++..+. .|.. .+|.|...|+-+..|.+. .++-++.||+++
T Consensus 382 ~~ri~~iR~~~a~e~G~~~P~iri~dn~-~L~~----~~Y~I~i~gv~v~~g~l~-~~~llai~~~~~ 443 (694)
T PRK12792 382 AHRVAKMRRKFAKQYGFVVPEIKLTDSL-SLPP----KTYQIKIHGTVVATQELR-PGELLVVVGDGP 443 (694)
T ss_pred HHHHHHHHHHHHHHcCCCCCceEEEeCC-CCCC----CeEEEEECCEEEEEEEec-CCeEEEeCCCcc
Confidence 4678999999999999877777765443 3443 478888888887777764 677788888765
No 221
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=22.38 E-value=1e+02 Score=23.23 Aligned_cols=45 Identities=16% Similarity=0.213 Sum_probs=30.7
Q ss_pred cccccc--cccccccccccccCCCCCCCc---eeeccccCcHHHHHHHhhhhcC
Q 040111 28 ADYKIQ--ESTLHLGWRADFCKNPDPQNI---TLEVESSDTIDNVKAKIQDKKR 76 (133)
Q Consensus 28 ~~ygI~--~stl~L~~~~i~Vk~~~g~~~---~l~V~~~~tV~~LK~~I~~~~g 76 (133)
-++|.+ |+|+|++- -..-+|..+ .+.+.+++|.+.|.++|.+.+-
T Consensus 125 ~~aG~k~sG~TVH~V~----e~vD~GpII~Q~~Vpv~~~Dt~etl~~RV~~~Eh 174 (200)
T COG0299 125 LEAGVKVSGCTVHFVT----EGVDTGPIIAQAAVPVLPGDTAETLEARVLEQEH 174 (200)
T ss_pred HHcCCCccCcEEEEEc----cCCCCCCeEEEEeeeecCCCCHHHHHHHHHHHHH
Confidence 456776 88888532 222234332 3567799999999999998763
No 222
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=22.38 E-value=21 Score=30.44 Aligned_cols=42 Identities=29% Similarity=0.383 Sum_probs=33.9
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-ccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWR 42 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~ 42 (133)
|.++.||+-..-..|-+||+|+-..||.+-|+. +..+.+.+.
T Consensus 69 iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~~ 111 (568)
T KOG2561|consen 69 IAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVAVG 111 (568)
T ss_pred HHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHHhc
Confidence 346788998888889999999999999999998 776654443
No 223
>TIGR01398 FlhA flagellar biosynthesis protein FlhA. This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model.
Probab=22.34 E-value=2e+02 Score=25.81 Aligned_cols=62 Identities=13% Similarity=0.111 Sum_probs=46.1
Q ss_pred cCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEEeCceeeeeecccccCccce
Q 040111 61 SDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIFCGCRVNFWNASLRFDPENV 128 (133)
Q Consensus 61 ~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (133)
.+.+..+++++++..|+.....++..+. .|.. .+|.|...|+-+..|.+. .++-++.||+++
T Consensus 368 ~~ri~~iR~~~a~elG~~~P~iri~dn~-~L~~----~~Y~I~i~gv~v~~g~l~-~~~~la~~~~~~ 429 (678)
T TIGR01398 368 LDRIRSIRKQLAQEYGFVMPVIRIRDNL-RLPP----NEYRIKIKGVEVARGELR-PGKYLAMNPGNA 429 (678)
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEeCC-CCCC----CeEEEEECCEEEEEEEEc-CCeEEEECCCcc
Confidence 4678999999999999877667664442 3443 478888888888777664 778888888763
No 224
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=22.14 E-value=96 Score=25.64 Aligned_cols=55 Identities=9% Similarity=-0.007 Sum_probs=46.8
Q ss_pred CCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCcc--ccccccccEE
Q 040111 50 DPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFE--EVLSFFWFVV 104 (133)
Q Consensus 50 ~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~--~tL~dy~~~~ 104 (133)
....+++++..+.....+++.++...|++.+.--|+|++.++.+. ..|..|++..
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~ 67 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKD 67 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhccccc
Confidence 345678888888889999999999999999999999999999875 5788887643
No 225
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=21.91 E-value=1.6e+02 Score=18.88 Aligned_cols=46 Identities=9% Similarity=0.157 Sum_probs=32.8
Q ss_pred eeeccccCcHHHHHHHhhhhcCCCCCceEEEe-CCccc-Ccccccccc
Q 040111 55 TLEVESSDTIDNVKAKIQDKKRIPPPAEADLL-KFPFF-FFEEVLSFF 100 (133)
Q Consensus 55 ~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~-~gk~L-~d~~tL~dy 100 (133)
..-|+++.|++++..-|..+.++++++-..+| ++..+ ..+.++++.
T Consensus 19 kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~L 66 (87)
T cd01612 19 VFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNL 66 (87)
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHH
Confidence 35588999999999999999999887755444 54423 234565554
No 226
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=21.64 E-value=1.3e+02 Score=19.24 Aligned_cols=42 Identities=10% Similarity=-0.021 Sum_probs=30.7
Q ss_pred CCceeeccccCcHHHHHHHhhhhcCCC-CCceEEEeCCcccCcc
Q 040111 52 QNITLEVESSDTIDNVKAKIQDKKRIP-PPAEADLLKFPFFFFE 94 (133)
Q Consensus 52 ~~~~l~V~~~~tV~~LK~~I~~~~gIp-~~~q~L~~~gk~L~d~ 94 (133)
++....|.. .+..+|+.+..++.+++ +....|.-.|...+|+
T Consensus 12 rs~k~GV~A-~sL~eL~~K~~~~l~l~~~~~lvL~eDGT~Vd~E 54 (79)
T cd06538 12 RSLRKGIMA-DSLEDLLNKVLDALLLDCISSLVLDEDGTGVDTE 54 (79)
T ss_pred CceeEeEEc-CCHHHHHHHHHHHcCCCCccEEEEecCCcEEccH
Confidence 344555544 46999999999999995 3335566799999876
No 227
>PF09079 Cdc6_C: CDC6, C terminal ; InterPro: IPR015163 The C-terminal domain of CDC6 assumes a winged helix fold, with a five alpha-helical bundle (alpha15-alpha19) structure, backed on one side by three beta strands (beta6-beta8). It has been shown that this domain acts as a DNA-localisation factor, however its exact function is, as yet, unknown. Putative functions include: (1) mediation of protein-protein interactions and (2) regulation of nucleotide binding and hydrolysis. Mutagenesis studies have shown that this domain is essential for appropriate Cdc6 activity []. ; PDB: 2QBY_A 2V1U_A 1W5T_A 1W5S_B 1FNN_B.
Probab=21.44 E-value=54 Score=20.47 Aligned_cols=62 Identities=21% Similarity=0.201 Sum_probs=40.4
Q ss_pred cHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEEeC-ceeeeeecccccCcccee
Q 040111 63 TIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIFCG-CRVNFWNASLRFDPENVL 129 (133)
Q Consensus 63 tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 129 (133)
.|-+.=..+++..|+.|-.++ +..+--..|+.++|......=-| +++++..=++..||+-|.
T Consensus 20 ~vy~~Y~~lc~~~~~~pls~~-----r~~~~l~eL~~~gli~~~~~~~G~~~G~~~~~~l~~d~~~v~ 82 (85)
T PF09079_consen 20 EVYEVYEELCESLGVDPLSYR-----RFSDYLSELEMLGLIESERKGRGRGRGRTREISLNVDPEDVL 82 (85)
T ss_dssp HHHHHHHHHHHHTTS----HH-----HHHHHHHHHHHTTSEEEEEEE-TT-CTEEEEEEECSSSHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCHH-----HHHHHHHHHHhCCCeEEEeecCCCCCCeEEEEEecCCHHHHH
Confidence 345555677777777554332 22222467889999988888788 689999999999998764
No 228
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=21.39 E-value=34 Score=29.97 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=30.3
Q ss_pred cccccccEEeEEEEeCcee---------eeeecccccCccceeeccC
Q 040111 96 VLSFFWFVVVGVIFCGCRV---------NFWNASLRFDPENVLWLLG 133 (133)
Q Consensus 96 tL~dy~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 133 (133)
+=.+.++++.++|||.+.. ..|-+-++.=|+-|+||+|
T Consensus 420 sR~~lglp~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~ 466 (620)
T COG3914 420 SRAQLGLPEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKA 466 (620)
T ss_pred chhhcCCCCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEec
Confidence 3456789999999886653 3488999999999999985
No 229
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=21.23 E-value=18 Score=18.86 Aligned_cols=12 Identities=17% Similarity=0.515 Sum_probs=10.1
Q ss_pred ecccccCcccee
Q 040111 118 NASLRFDPENVL 129 (133)
Q Consensus 118 ~~~~~~~~~~~~ 129 (133)
.|++..||.|..
T Consensus 3 ~kAie~~P~n~~ 14 (34)
T PF13431_consen 3 KKAIELNPNNAE 14 (34)
T ss_pred HHHHHHCCCCHH
Confidence 578999999975
No 230
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=21.06 E-value=1.6e+02 Score=19.00 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=29.7
Q ss_pred CCceeeccccCcHHHHHHHhhhhcCCCCCceEEE
Q 040111 52 QNITLEVESSDTIDNVKAKIQDKKRIPPPAEADL 85 (133)
Q Consensus 52 ~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~ 85 (133)
....+.|++..+=.++|+.|+..+|+.+...+-+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~ 55 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTL 55 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeE
Confidence 4678999999999999999999999988776643
No 231
>PF06624 RAMP4: Ribosome associated membrane protein RAMP4; InterPro: IPR010580 This entry contains Serp1/Ramp4, which has been shown to interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. It has also been shown to protect unfolded target proteins against degradation during ER stress. It may facilitate glycosylation of target proteins after termination of ER stress and may modulate the use of N-glycosylation sites on target proteins [, ].
Probab=21.03 E-value=22 Score=21.78 Aligned_cols=23 Identities=9% Similarity=0.160 Sum_probs=18.1
Q ss_pred CccccccccccEEeEEEEeCcee
Q 040111 92 FFEEVLSFFWFVVVGVIFCGCRV 114 (133)
Q Consensus 92 ~d~~tL~dy~~~~~~~~~~~~~~ 114 (133)
++..+++-+.+-...+++|||.+
T Consensus 32 ~~k~pVgp~~L~l~iFVV~Gs~i 54 (63)
T PF06624_consen 32 EKKYPVGPWLLGLFIFVVCGSAI 54 (63)
T ss_pred cccCCcCHHHHhhhheeeEcHHH
Confidence 45678888878888899999853
No 232
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=21.02 E-value=1.7e+02 Score=18.65 Aligned_cols=50 Identities=16% Similarity=0.064 Sum_probs=24.9
Q ss_pred ccCcHHHHHHHhhh-hcCCCCC----ceEEEeCCcc----cCccccccccccEEeEEEE
Q 040111 60 SSDTIDNVKAKIQD-KKRIPPP----AEADLLKFPF----FFFEEVLSFFWFVVVGVIF 109 (133)
Q Consensus 60 ~~~tV~~LK~~I~~-~~gIp~~----~q~L~~~gk~----L~d~~tL~dy~~~~~~~~~ 109 (133)
...|+.+|-.+|-. +.|+... ..+++|..-. -..+++|++++|...++.-
T Consensus 7 ~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~ 65 (87)
T PF14732_consen 7 KKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILT 65 (87)
T ss_dssp TT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEE
T ss_pred hhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEE
Confidence 45789999887654 4565431 3344443333 1225789999987655443
No 233
>KOG1821 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.34 E-value=19 Score=30.29 Aligned_cols=77 Identities=22% Similarity=0.285 Sum_probs=52.6
Q ss_pred ccCCCCCCeEEEe---------CCEE-CCCCCCccccc-cc-cccccccccccccCCC------CCCCceeeccccCcHH
Q 040111 4 KEGIPPGQQRSIF---------AGKQ-LEDGRTLADYK-IQ-ESTLHLGWRADFCKNP------DPQNITLEVESSDTID 65 (133)
Q Consensus 4 ~~gip~~~Q~Li~---------~gk~-L~D~~tL~~yg-I~-~stl~L~~~~i~Vk~~------~g~~~~l~V~~~~tV~ 65 (133)
.+++||++|.|-- .|.+ |+|...+.+.| |. +-.+.+.+..+.-|.- +.+.+.+..+++.+..
T Consensus 282 ~eaLPpeqqmlqkaE~Ea~ea~kg~~clddgf~IehnggipankklkmlLke~~YkeK~kekdkdakk~~~~d~~~niLQ 361 (662)
T KOG1821|consen 282 QEALPPEQQMLQKAEKEAEEAAKGLPCLDDGFLIEHNGGIPANKKLKMLLKEIEYKEKGKEKDKDAKKHNLGDNNNNILQ 361 (662)
T ss_pred HHhCChHHHHHHHHhhhchhhhcCCcccccceEEeccCCCCcchhhhhhhHHHHHHhhcccccchhhhhccCCCcccccc
Confidence 3689999999853 3554 78888887665 66 7777776666544432 2233556666777777
Q ss_pred HHHHHhhhhcCCCCC
Q 040111 66 NVKAKIQDKKRIPPP 80 (133)
Q Consensus 66 ~LK~~I~~~~gIp~~ 80 (133)
-+.+.|++..-.++.
T Consensus 362 Pv~qaIQaaeam~~~ 376 (662)
T KOG1821|consen 362 PVDQAIQAAEAMENH 376 (662)
T ss_pred hHHHHHHHHhhcCCc
Confidence 788899988877655
Done!