Query 040111
Match_columns 133
No_of_seqs 140 out of 1282
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 07:54:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040111.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040111hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rt3_B Ubiquitin-like protein 100.0 2.7E-29 9.3E-34 179.5 5.3 106 1-106 32-146 (159)
2 3u30_A Ubiquitin, linear DI-ub 99.9 9.9E-29 3.4E-33 179.0 4.8 109 1-109 50-164 (172)
3 3b08_A Polyubiquitin-C, ubiqui 99.9 2.3E-27 7.8E-32 167.2 5.4 108 1-108 30-143 (152)
4 3plu_A Ubiquitin-like modifier 99.7 5.4E-19 1.9E-23 116.4 3.8 63 44-106 24-86 (93)
5 2lxa_A Ubiquitin-like protein 99.7 7.9E-19 2.7E-23 114.6 2.7 75 42-116 2-80 (87)
6 1wju_A NEDD8 ultimate buster-1 99.7 4.5E-18 1.5E-22 113.6 4.9 59 51-109 29-87 (100)
7 4eew_A Large proline-rich prot 99.7 4.3E-18 1.5E-22 110.3 4.2 74 34-108 5-83 (88)
8 1uh6_A Ubiquitin-like 5; beta- 99.7 5E-18 1.7E-22 113.4 3.7 65 43-107 30-94 (100)
9 3phx_B Ubiquitin-like protein 99.7 7.6E-18 2.6E-22 107.0 4.3 67 43-109 6-72 (79)
10 4fbj_B NEDD8; effector-HOST ta 99.7 2.1E-17 7.3E-22 107.4 3.6 66 43-108 2-67 (88)
11 2kk8_A Uncharacterized protein 99.7 1.1E-17 3.9E-22 108.1 2.1 66 43-108 12-78 (84)
12 3m63_B Ubiquitin domain-contai 99.7 4E-17 1.4E-21 109.0 4.3 85 24-109 7-95 (101)
13 1sif_A Ubiquitin; hydrophobic 99.7 5.3E-17 1.8E-21 105.6 3.7 71 38-108 6-76 (88)
14 4dwf_A HLA-B-associated transc 99.6 7.5E-17 2.6E-21 104.8 4.3 65 43-108 7-71 (90)
15 3m62_B UV excision repair prot 99.6 6.6E-17 2.2E-21 108.7 4.1 67 43-109 3-69 (106)
16 4a20_A Ubiquitin-like protein 99.6 6.7E-17 2.3E-21 107.6 3.7 64 44-107 22-89 (98)
17 2hj8_A Interferon-induced 17 k 99.6 5.1E-17 1.7E-21 105.6 3.0 66 43-108 6-71 (88)
18 1ndd_A NEDD8, protein (ubiquit 99.6 1E-16 3.5E-21 100.2 4.3 67 43-109 2-68 (76)
19 3v6c_B Ubiquitin; structural g 99.6 9E-17 3.1E-21 104.8 4.1 66 44-109 20-85 (91)
20 3dbh_I NEDD8; cell cycle, acti 99.6 7.5E-17 2.6E-21 104.0 3.6 67 44-110 15-81 (88)
21 2faz_A Ubiquitin-like containi 99.6 9.2E-17 3.2E-21 101.5 3.9 66 43-108 4-71 (78)
22 3mtn_B UBA80, ubcep1, ubiquiti 99.6 1.2E-16 4E-21 102.2 4.2 65 44-108 6-70 (85)
23 2uyz_B Small ubiquitin-related 99.6 8E-17 2.7E-21 102.2 3.3 66 43-108 5-70 (79)
24 3n3k_B Ubiquitin; hydrolase, p 99.6 7.3E-17 2.5E-21 103.3 3.0 63 44-106 6-68 (85)
25 1uel_A HHR23B, UV excision rep 99.6 2.7E-16 9.2E-21 103.5 4.8 68 43-110 2-72 (95)
26 2wyq_A HHR23A, UV excision rep 99.6 1.8E-16 6.2E-21 101.6 3.8 67 43-109 7-76 (85)
27 4hcn_B Polyubiquitin, ubiquiti 99.6 2.1E-16 7.2E-21 104.6 4.0 66 44-109 25-90 (98)
28 1wh3_A 59 kDa 2'-5'-oligoadeny 99.6 2.1E-16 7E-21 101.9 3.5 64 44-107 10-73 (87)
29 2kan_A Uncharacterized protein 99.6 2.6E-16 8.9E-21 103.7 4.1 64 44-108 18-82 (94)
30 3a9j_A Ubiquitin; protein comp 99.6 2.5E-16 8.4E-21 98.5 3.7 67 43-109 2-68 (76)
31 2dzi_A Ubiquitin-like protein 99.6 2.6E-16 9E-21 99.8 3.8 66 44-109 10-75 (81)
32 1yx5_B Ubiquitin; proteasome, 99.6 3.1E-16 1.1E-20 103.6 3.9 77 43-119 2-83 (98)
33 3b1l_X E3 ubiquitin-protein li 99.4 4.9E-17 1.7E-21 102.2 0.0 68 43-110 2-69 (76)
34 3k9o_B Ubiquitin, UBB+1; E2-25 99.6 3.2E-16 1.1E-20 102.8 3.8 64 43-106 3-66 (96)
35 2bwf_A Ubiquitin-like protein 99.6 2.5E-16 8.7E-21 99.0 3.1 66 43-109 6-71 (77)
36 1wyw_B Ubiquitin-like protein 99.6 2.7E-16 9.1E-21 104.0 2.9 65 44-108 24-88 (97)
37 1wgh_A Ubiquitin-like 3, HCG-1 99.6 6.9E-16 2.3E-20 105.6 4.9 60 44-103 19-86 (116)
38 1wy8_A NP95-like ring finger p 99.6 5.7E-16 1.9E-20 100.3 3.7 64 44-107 10-75 (89)
39 2kdb_A Homocysteine-responsive 99.6 8.8E-16 3E-20 102.3 4.7 65 44-108 26-96 (99)
40 1wgd_A Homocysteine-responsive 99.6 1.1E-15 3.9E-20 100.0 5.0 65 44-108 10-80 (93)
41 2kd0_A LRR repeats and ubiquit 99.6 6.9E-16 2.3E-20 99.8 3.6 66 44-109 14-79 (85)
42 2kdi_A Ubiquitin, vacuolar pro 99.6 7.8E-16 2.7E-20 104.8 4.0 65 44-108 12-76 (114)
43 4ajy_B Transcription elongatio 99.6 4.7E-16 1.6E-20 106.4 2.6 61 44-104 3-64 (118)
44 2fnj_B Transcription elongatio 99.6 4.8E-16 1.6E-20 106.5 2.6 60 44-103 3-63 (118)
45 1we6_A Splicing factor, putati 99.6 2.4E-15 8.1E-20 101.7 5.7 65 44-108 30-98 (111)
46 2gow_A HCG-1 protein, ubiquiti 99.6 1.2E-15 4.1E-20 105.6 4.2 62 42-103 18-87 (125)
47 3vdz_A Ubiquitin-40S ribosomal 99.6 1.2E-15 4.1E-20 103.3 4.1 67 43-109 37-103 (111)
48 2l7r_A Ubiquitin-like protein 99.6 1E-15 3.4E-20 100.5 3.1 64 44-109 22-85 (93)
49 1ttn_A DC-UBP, dendritic cell- 99.6 9.3E-16 3.2E-20 102.9 2.7 66 44-109 26-91 (106)
50 1se9_A Ubiquitin family; ubiqu 99.6 1.7E-15 5.8E-20 104.9 4.0 62 43-104 18-87 (126)
51 2ojr_A Ubiquitin; lanthide-bin 99.6 3.7E-15 1.3E-19 100.7 5.6 66 44-109 38-103 (111)
52 2klc_A Ubiquilin-1; ubiquitin- 99.6 2E-15 6.8E-20 100.6 4.0 65 44-109 28-92 (101)
53 3l0w_B Monoubiquitinated proli 99.6 4.6E-15 1.6E-19 107.3 6.2 62 43-104 2-63 (169)
54 3u5e_m 60S ribosomal protein L 99.5 4.6E-16 1.6E-20 107.8 0.0 66 43-108 2-67 (128)
55 1wx8_A Riken cDNA 4931431F19; 99.5 1.8E-15 6.2E-20 99.4 2.7 65 44-109 20-84 (96)
56 1yqb_A Ubiquilin 3; structural 99.5 2E-15 6.9E-20 100.5 2.9 65 44-109 25-89 (100)
57 2dzj_A Synaptic glycoprotein S 99.5 5.1E-15 1.8E-19 96.5 4.6 69 42-110 11-85 (88)
58 3rt3_B Ubiquitin-like protein 99.5 4.1E-15 1.4E-19 105.6 4.0 64 43-106 4-69 (159)
59 1j8c_A Ubiquitin-like protein 99.5 7.4E-15 2.5E-19 101.5 4.9 65 44-109 35-99 (125)
60 1v2y_A 3300001G02RIK protein; 99.5 1.7E-15 5.7E-20 102.0 1.2 64 43-106 9-88 (105)
61 1v5t_A 8430435I17RIK protein; 99.5 4.8E-15 1.6E-19 96.7 3.1 68 44-112 10-82 (90)
62 3q3f_A Ribonuclease/ubiquitin 99.5 5.1E-15 1.8E-19 108.9 3.6 65 44-108 108-172 (189)
63 3u5c_f 40S ribosomal protein S 99.5 1.1E-15 3.7E-20 109.0 0.0 72 43-114 2-78 (152)
64 4dbg_A Ranbp-type and C3HC4-ty 99.5 1E-14 3.5E-19 98.0 4.5 60 44-103 27-88 (105)
65 1v5o_A 1700011N24RIK protein; 99.5 5E-15 1.7E-19 98.7 2.6 67 44-110 10-81 (102)
66 1wx7_A Ubiquilin 3; ubiquitin- 99.5 9E-15 3.1E-19 98.0 3.9 66 44-110 20-85 (106)
67 3u30_A Ubiquitin, linear DI-ub 99.5 6.7E-15 2.3E-19 106.1 3.2 62 43-104 22-83 (172)
68 1wgg_A Ubiquitin carboxyl-term 99.5 5.9E-15 2E-19 97.6 2.6 68 44-113 10-79 (96)
69 2dzm_A FAS-associated factor 1 99.5 1.9E-14 6.6E-19 96.0 3.6 65 44-109 11-77 (100)
70 1we7_A SF3A1 protein; structur 99.5 3E-14 1E-18 96.8 4.5 58 49-106 43-100 (115)
71 1x1m_A Ubiquitin-like protein 99.5 3.8E-14 1.3E-18 95.2 4.4 66 43-108 14-94 (107)
72 1wxv_A BAG-family molecular ch 99.5 4.1E-14 1.4E-18 92.3 4.3 65 44-109 10-80 (92)
73 3b08_A Polyubiquitin-C, ubiqui 99.5 2.9E-14 9.9E-19 99.8 3.7 65 43-107 2-66 (152)
74 2xzm_9 RPS31E; ribosome, trans 99.5 5.9E-15 2E-19 108.5 -0.0 73 43-115 2-74 (189)
75 2kjr_A CG11242; UBL, ubiquitin 99.4 2.8E-14 9.6E-19 94.3 3.0 65 44-108 18-90 (95)
76 1v86_A DNA segment, CHR 7, way 99.4 1.6E-14 5.5E-19 95.2 1.3 63 44-108 20-82 (95)
77 1wia_A Hypothetical ubiquitin- 99.4 5.4E-14 1.8E-18 92.2 3.0 64 44-110 10-74 (95)
78 4b6w_A Tubulin-specific chaper 99.4 9.7E-14 3.3E-18 90.1 3.8 61 48-108 11-78 (86)
79 2kj6_A Tubulin folding cofacto 99.4 1.9E-13 6.5E-18 90.6 4.6 58 51-108 26-90 (97)
80 2daf_A FLJ35834 protein; hypot 99.4 3.3E-13 1.1E-17 92.0 5.7 77 44-120 18-99 (118)
81 3ai5_A Yeast enhanced green fl 99.4 3.4E-13 1.2E-17 105.7 4.1 66 44-109 236-301 (307)
82 2kdi_A Ubiquitin, vacuolar pro 99.3 2.1E-14 7.3E-19 97.6 -2.7 66 1-66 39-113 (114)
83 1oqy_A HHR23A, UV excision rep 99.3 2.2E-13 7.4E-18 109.2 2.4 66 43-108 9-77 (368)
84 1v6e_A Cytoskeleton-associated 99.3 4.8E-13 1.6E-17 88.0 3.2 65 44-108 10-82 (95)
85 1wf9_A NPL4 family protein; be 99.3 8E-13 2.7E-17 88.8 2.3 67 43-110 9-91 (107)
86 1t0y_A Tubulin folding cofacto 99.3 5.2E-12 1.8E-16 86.7 4.9 65 44-108 9-81 (122)
87 1wju_A NEDD8 ultimate buster-1 99.2 1.3E-12 4.4E-17 87.1 1.3 39 1-39 49-88 (100)
88 3plu_A Ubiquitin-like modifier 99.2 1.5E-12 5.1E-17 85.6 1.6 40 1-40 51-91 (93)
89 2lxa_A Ubiquitin-like protein 99.2 2.3E-12 8E-17 83.7 2.1 42 2-43 35-78 (87)
90 2kzr_A Ubiquitin thioesterase 99.2 2.6E-12 8.7E-17 82.9 2.0 67 44-111 3-75 (86)
91 3shq_A UBLCP1; phosphatase, hy 99.2 3.8E-12 1.3E-16 100.3 3.1 70 44-114 8-81 (320)
92 3phx_B Ubiquitin-like protein 99.2 2.5E-12 8.6E-17 81.1 1.6 43 1-43 34-77 (79)
93 2faz_A Ubiquitin-like containi 99.2 7.4E-12 2.5E-16 78.7 1.7 43 1-43 34-77 (78)
94 1uh6_A Ubiquitin-like 5; beta- 99.2 3.9E-12 1.3E-16 84.7 0.3 41 1-41 58-99 (100)
95 2kk8_A Uncharacterized protein 99.2 4.7E-12 1.6E-16 81.5 0.6 43 1-43 40-84 (84)
96 4a20_A Ubiquitin-like protein 99.1 1.1E-11 3.7E-16 82.3 2.1 42 2-43 53-96 (98)
97 2uyz_B Small ubiquitin-related 99.1 7.3E-12 2.5E-16 79.0 0.7 43 1-43 33-76 (79)
98 4fbj_B NEDD8; effector-HOST ta 99.1 1.1E-11 3.9E-16 80.1 1.5 43 1-43 30-73 (88)
99 2fnj_B Transcription elongatio 99.1 1.2E-11 4.1E-16 84.6 1.5 61 1-67 31-99 (118)
100 3v6c_B Ubiquitin; structural g 99.1 1.4E-11 4.8E-16 79.9 1.6 43 1-43 47-90 (91)
101 1se9_A Ubiquitin family; ubiqu 99.1 4.1E-11 1.4E-15 82.8 3.6 42 2-43 53-103 (126)
102 2io1_B Small ubiquitin-related 99.1 5.1E-11 1.7E-15 78.4 3.7 59 44-102 10-68 (94)
103 1yx5_B Ubiquitin; proteasome, 99.1 2.4E-11 8.1E-16 79.9 2.0 52 1-52 30-87 (98)
104 2dzi_A Ubiquitin-like protein 99.1 3.3E-11 1.1E-15 75.9 2.6 43 1-43 37-80 (81)
105 3m62_B UV excision repair prot 99.1 2.2E-11 7.4E-16 81.5 1.8 43 1-43 31-74 (106)
106 4ajy_B Transcription elongatio 99.1 3.4E-11 1.2E-15 82.3 2.7 43 1-43 31-81 (118)
107 1wyw_B Ubiquitin-like protein 99.1 1.5E-11 5.1E-16 81.0 0.7 43 1-43 51-94 (97)
108 4eew_A Large proline-rich prot 99.1 2.3E-11 7.9E-16 78.2 1.5 42 1-42 47-88 (88)
109 3dbh_I NEDD8; cell cycle, acti 99.1 1.8E-11 6.2E-16 78.4 1.0 43 1-43 42-85 (88)
110 2daf_A FLJ35834 protein; hypot 99.1 3.1E-11 1.1E-15 82.3 2.1 42 2-43 47-89 (118)
111 2kan_A Uncharacterized protein 99.1 2.3E-11 7.8E-16 79.8 1.2 43 1-43 44-88 (94)
112 3b1l_X E3 ubiquitin-protein li 98.6 1.6E-11 5.4E-16 76.7 0.0 43 1-43 30-73 (76)
113 2bwf_A Ubiquitin-like protein 99.1 3.7E-11 1.3E-15 75.0 1.7 42 1-42 33-75 (77)
114 1wm3_A Ubiquitin-like protein 99.1 1.7E-10 5.7E-15 72.1 4.7 63 44-106 4-66 (72)
115 4hcn_B Polyubiquitin, ubiquiti 99.1 3.5E-11 1.2E-15 79.2 1.6 43 1-43 52-95 (98)
116 3n3k_B Ubiquitin; hydrolase, p 99.1 3.4E-11 1.2E-15 76.5 1.5 43 1-43 33-76 (85)
117 1wgd_A Homocysteine-responsive 99.1 3.3E-11 1.1E-15 78.5 1.4 41 2-42 40-85 (93)
118 1ndd_A NEDD8, protein (ubiquit 99.1 3.8E-11 1.3E-15 74.5 1.7 42 1-42 30-72 (76)
119 2wyq_A HHR23A, UV excision rep 99.0 4.5E-11 1.5E-15 76.1 1.9 39 5-43 42-81 (85)
120 1wy8_A NP95-like ring finger p 99.0 4E-11 1.4E-15 77.2 1.6 43 1-43 39-82 (89)
121 2io0_B Small ubiquitin-related 99.0 5.1E-10 1.7E-14 73.2 6.6 59 44-102 8-66 (91)
122 4b6w_A Tubulin-specific chaper 99.0 2.5E-11 8.5E-16 78.6 0.3 42 1-42 34-83 (86)
123 1wh3_A 59 kDa 2'-5'-oligoadeny 99.0 4.5E-11 1.5E-15 76.5 1.5 43 1-43 37-80 (87)
124 4dwf_A HLA-B-associated transc 99.0 4.7E-11 1.6E-15 77.1 1.6 43 1-43 35-77 (90)
125 2hj8_A Interferon-induced 17 k 99.0 2.3E-11 7.9E-16 78.6 0.0 42 1-42 34-76 (88)
126 2kd0_A LRR repeats and ubiquit 99.0 7.6E-11 2.6E-15 75.8 2.2 42 1-42 41-83 (85)
127 3m63_B Ubiquitin domain-contai 99.0 5.6E-11 1.9E-15 79.0 1.6 42 1-42 57-99 (101)
128 2l7r_A Ubiquitin-like protein 99.0 3.3E-11 1.1E-15 78.8 0.4 43 1-43 47-90 (93)
129 1uel_A HHR23B, UV excision rep 99.0 1E-10 3.5E-15 76.6 2.6 39 5-43 37-76 (95)
130 3mtn_B UBA80, ubcep1, ubiquiti 99.0 6.3E-11 2.2E-15 75.2 1.5 42 1-42 33-75 (85)
131 3k9o_B Ubiquitin, UBB+1; E2-25 99.0 7E-11 2.4E-15 77.0 1.7 43 1-43 31-74 (96)
132 3a9j_A Ubiquitin; protein comp 99.0 8.1E-11 2.8E-15 73.0 1.8 42 1-42 30-72 (76)
133 1sif_A Ubiquitin; hydrophobic 99.0 7E-11 2.4E-15 76.3 1.5 42 1-42 39-81 (88)
134 1wx8_A Riken cDNA 4931431F19; 99.0 5.4E-11 1.8E-15 77.8 0.6 43 1-43 46-89 (96)
135 1wgh_A Ubiquitin-like 3, HCG-1 99.0 1.4E-10 4.8E-15 79.1 2.5 40 4-43 55-99 (116)
136 1ttn_A DC-UBP, dendritic cell- 99.0 7.9E-11 2.7E-15 78.7 1.2 43 1-43 53-96 (106)
137 3vdz_A Ubiquitin-40S ribosomal 99.0 1.1E-10 3.8E-15 78.6 1.6 43 1-43 65-108 (111)
138 1wgg_A Ubiquitin carboxyl-term 99.0 1E-10 3.6E-15 77.0 1.4 43 1-44 37-80 (96)
139 4dbg_A Ranbp-type and C3HC4-ty 99.0 1.1E-10 3.8E-15 78.3 1.4 42 1-42 56-99 (105)
140 1yqb_A Ubiquilin 3; structural 99.0 7.8E-11 2.7E-15 78.1 0.6 43 1-43 51-94 (100)
141 1we6_A Splicing factor, putati 99.0 1.2E-10 4E-15 78.4 1.3 42 1-42 61-103 (111)
142 1we7_A SF3A1 protein; structur 99.0 1.2E-10 4.1E-15 78.8 1.3 42 1-42 65-107 (115)
143 3l0w_B Monoubiquitinated proli 99.0 2E-10 6.8E-15 82.9 2.4 43 1-43 30-73 (169)
144 2klc_A Ubiquilin-1; ubiquitin- 99.0 1.5E-10 5.1E-15 76.8 1.5 43 1-43 54-97 (101)
145 1wx7_A Ubiquilin 3; ubiquitin- 98.9 1.7E-10 5.9E-15 76.9 1.3 43 1-43 46-89 (106)
146 3u5e_m 60S ribosomal protein L 98.9 9.4E-11 3.2E-15 80.8 0.0 47 1-52 30-77 (128)
147 3a4r_A Nfatc2-interacting prot 98.9 6.4E-10 2.2E-14 70.7 3.8 63 44-106 10-73 (79)
148 1x1m_A Ubiquitin-like protein 98.9 2.2E-10 7.7E-15 76.6 1.7 42 2-43 55-100 (107)
149 1j8c_A Ubiquitin-like protein 98.9 2.4E-10 8.3E-15 78.7 1.9 43 1-43 61-104 (125)
150 3q3f_A Ribonuclease/ubiquitin 98.9 2E-10 6.8E-15 84.4 1.4 43 1-43 135-178 (189)
151 1v5t_A 8430435I17RIK protein; 98.9 2.2E-10 7.5E-15 74.4 1.4 43 1-43 37-83 (90)
152 3u5c_f 40S ribosomal protein S 98.9 1.3E-10 4.4E-15 82.7 0.0 43 1-43 30-73 (152)
153 2d07_B Ubiquitin-like protein 98.9 1.5E-09 5.1E-14 71.1 4.4 62 44-105 20-81 (93)
154 2ojr_A Ubiquitin; lanthide-bin 98.9 5.7E-10 1.9E-14 75.0 2.4 43 1-43 65-108 (111)
155 1wxv_A BAG-family molecular ch 98.9 3.4E-10 1.2E-14 73.4 1.1 43 1-43 41-85 (92)
156 1v5o_A 1700011N24RIK protein; 98.9 2.3E-10 7.9E-15 75.9 0.1 43 1-43 41-85 (102)
157 2gow_A HCG-1 protein, ubiquiti 98.9 3.2E-10 1.1E-14 78.3 0.7 40 4-43 56-100 (125)
158 1wz0_A Ubiquitin-like protein 98.9 2E-09 6.9E-14 72.0 4.3 62 44-105 27-88 (104)
159 2kdb_A Homocysteine-responsive 98.9 7.4E-10 2.5E-14 73.4 2.0 36 5-40 60-99 (99)
160 2k8h_A Small ubiquitin protein 98.8 1.8E-09 6.1E-14 72.9 3.7 63 44-106 29-91 (110)
161 1wjn_A Tubulin-folding protein 98.8 1.7E-09 5.7E-14 71.0 3.5 60 49-108 20-87 (97)
162 2eke_C Ubiquitin-like protein 98.8 3.6E-09 1.2E-13 71.0 3.9 62 44-106 34-95 (106)
163 2kjr_A CG11242; UBL, ubiquitin 98.8 8.5E-10 2.9E-14 72.6 0.8 40 1-40 47-93 (95)
164 2kj6_A Tubulin folding cofacto 98.7 8E-10 2.7E-14 73.0 -0.6 40 1-40 46-93 (97)
165 2dzj_A Synaptic glycoprotein S 98.7 1.6E-09 5.5E-14 70.2 0.6 38 2-39 44-85 (88)
166 2dzm_A FAS-associated factor 1 98.7 1.4E-09 4.7E-14 72.3 -0.3 44 1-45 38-84 (100)
167 1wia_A Hypothetical ubiquitin- 98.7 7.2E-09 2.4E-13 67.5 2.9 35 9-43 42-78 (95)
168 1v86_A DNA segment, CHR 7, way 98.7 8.6E-10 2.9E-14 72.3 -1.8 42 1-43 46-88 (95)
169 1v6e_A Cytoskeleton-associated 98.7 3E-09 1E-13 69.5 0.6 41 1-41 38-86 (95)
170 1v2y_A 3300001G02RIK protein; 98.6 9E-10 3.1E-14 73.8 -2.7 34 10-43 61-96 (105)
171 1t0y_A Tubulin folding cofacto 98.6 1.3E-08 4.3E-13 69.6 1.4 43 1-43 37-87 (122)
172 4efo_A Serine/threonine-protei 98.5 7.6E-08 2.6E-12 63.1 3.8 51 50-100 22-74 (94)
173 2xzm_9 RPS31E; ribosome, trans 98.5 1.9E-08 6.5E-13 73.8 0.0 39 1-43 30-68 (189)
174 1oqy_A HHR23A, UV excision rep 98.5 3.3E-08 1.1E-12 79.1 1.3 40 4-43 43-83 (368)
175 2io1_B Small ubiquitin-related 98.4 7.8E-08 2.7E-12 63.0 2.3 42 2-43 38-80 (94)
176 3shq_A UBLCP1; phosphatase, hy 98.3 3.9E-08 1.3E-12 77.3 -0.8 43 1-43 34-80 (320)
177 1wm3_A Ubiquitin-like protein 98.3 2.9E-07 9.8E-12 57.2 2.7 39 2-40 32-71 (72)
178 3kyd_D Small ubiquitin-related 98.3 6.1E-07 2.1E-11 60.9 4.4 61 44-104 43-103 (115)
179 1wf9_A NPL4 family protein; be 98.3 5.8E-08 2E-12 64.8 -1.0 42 1-42 37-94 (107)
180 2io0_B Small ubiquitin-related 98.3 4.9E-07 1.7E-11 58.8 3.3 42 2-43 36-78 (91)
181 2d07_B Ubiquitin-like protein 98.2 6.2E-07 2.1E-11 58.5 2.3 42 2-43 48-90 (93)
182 2kzr_A Ubiquitin thioesterase 98.1 4.8E-07 1.6E-11 57.9 0.6 41 1-41 30-76 (86)
183 3pge_A SUMO-modified prolifera 98.1 1.8E-06 6.1E-11 63.8 3.5 58 44-102 32-89 (200)
184 3a4r_A Nfatc2-interacting prot 98.1 9.7E-07 3.3E-11 55.8 1.7 39 2-40 39-78 (79)
185 2pjh_A Protein NPL4, nuclear p 98.1 1.1E-06 3.8E-11 55.8 1.7 60 44-104 7-71 (80)
186 1wz0_A Ubiquitin-like protein 98.1 8.7E-07 3E-11 59.0 1.0 42 2-43 55-97 (104)
187 2eke_C Ubiquitin-like protein 98.1 1.6E-06 5.5E-11 58.0 2.3 42 2-43 61-103 (106)
188 2k8h_A Small ubiquitin protein 97.9 1.2E-06 4.2E-11 58.9 -0.2 42 2-43 57-99 (110)
189 3goe_A DNA repair protein RAD6 97.9 1.5E-05 5.3E-10 50.3 4.8 59 45-103 13-72 (82)
190 3tix_A Ubiquitin-like protein 97.9 5.9E-06 2E-10 60.7 3.0 60 44-104 60-119 (207)
191 3ai5_A Yeast enhanced green fl 97.9 3.2E-06 1.1E-10 66.1 1.3 36 1-36 263-298 (307)
192 3v7o_A Minor nucleoprotein VP3 97.7 4.1E-06 1.4E-10 62.3 0.0 64 44-108 24-87 (227)
193 1wjn_A Tubulin-folding protein 97.7 1.2E-05 4E-10 52.3 2.0 41 1-41 42-91 (97)
194 3kyd_D Small ubiquitin-related 97.5 7.3E-05 2.5E-09 50.6 3.1 42 2-43 71-113 (115)
195 3pge_A SUMO-modified prolifera 97.4 6.5E-05 2.2E-09 55.4 2.2 42 2-43 59-101 (200)
196 3uf8_A Ubiquitin-like protein 97.3 0.00014 4.7E-09 53.7 3.5 58 44-102 24-81 (209)
197 2kc2_A Talin-1, F1; FERM, adhe 97.3 5.6E-05 1.9E-09 52.0 0.6 38 43-80 13-50 (128)
198 3qx1_A FAS-associated factor 1 97.2 0.001 3.4E-08 42.0 5.8 66 44-110 10-80 (84)
199 3ix6_A TS, tsase, thymidylate 97.1 6.9E-05 2.4E-09 59.7 0.0 62 44-106 24-85 (360)
200 2jxx_A Nfatc2-interacting prot 97.1 0.00041 1.4E-08 45.5 3.6 61 44-104 28-89 (97)
201 2dzk_A UBX domain-containing p 97.0 0.0014 4.8E-08 43.5 5.9 78 44-121 16-98 (109)
202 3tix_A Ubiquitin-like protein 97.0 0.00022 7.4E-09 52.4 1.7 42 2-43 87-129 (207)
203 3v7o_A Minor nucleoprotein VP3 96.8 0.0002 6.9E-09 53.2 0.0 42 2-43 51-93 (227)
204 2al3_A TUG long isoform; TUG U 96.8 0.0007 2.4E-08 43.8 2.5 63 44-106 12-74 (90)
205 4efo_A Serine/threonine-protei 96.8 0.00041 1.4E-08 45.2 1.3 32 1-32 43-76 (94)
206 4da1_A Protein phosphatase 1K, 96.7 0.00027 9.2E-09 56.4 0.0 61 44-105 33-93 (389)
207 2l76_A Nfatc2-interacting prot 96.0 0.0048 1.7E-07 40.2 3.0 59 44-103 24-82 (95)
208 1wj4_A KIAA0794 protein; UBX d 95.9 0.0054 1.8E-07 41.7 3.1 65 44-109 46-115 (124)
209 3ivf_A Talin-1; FERM domain, c 95.8 0.0092 3.1E-07 47.0 4.6 99 18-119 59-171 (371)
210 3goe_A DNA repair protein RAD6 95.6 0.0077 2.6E-07 37.9 2.6 39 3-41 41-81 (82)
211 3ix6_A TS, tsase, thymidylate 95.2 0.0034 1.2E-07 50.0 0.0 42 2-43 51-93 (360)
212 2bps_A YUKD protein; ubiquitin 95.1 0.012 4.1E-07 37.2 2.4 59 48-106 13-76 (81)
213 2cr5_A Reproduction 8; UBX dom 95.1 0.025 8.5E-07 37.3 4.1 66 44-110 26-95 (109)
214 3uf8_A Ubiquitin-like protein 95.1 0.011 3.6E-07 43.5 2.4 42 2-43 51-93 (209)
215 1s3s_G P47 protein; AAA ATPase 94.7 0.019 6.4E-07 39.0 2.8 64 44-107 55-122 (127)
216 2daj_A KIAA0977 protein, COBL- 94.6 0.031 1.1E-06 35.6 3.4 62 45-106 14-78 (91)
217 4da1_A Protein phosphatase 1K, 94.5 0.0066 2.2E-07 48.3 0.0 42 2-43 60-102 (389)
218 2jxx_A Nfatc2-interacting prot 93.6 0.03 1E-06 36.5 1.8 37 3-39 58-95 (97)
219 2kvr_A Ubiquitin carboxyl-term 92.8 0.077 2.6E-06 36.2 3.0 33 53-85 57-89 (130)
220 4e71_A Plexin-B2, MM1; transme 92.4 0.14 4.7E-06 34.2 3.7 59 50-108 22-105 (111)
221 2juo_A GA-binding protein alph 90.5 0.37 1.3E-05 30.6 4.1 55 54-108 5-59 (89)
222 2l76_A Nfatc2-interacting prot 90.4 0.091 3.1E-06 34.1 1.2 39 3-41 52-91 (95)
223 2pjh_A Protein NPL4, nuclear p 88.9 0.066 2.3E-06 33.3 -0.3 39 2-40 34-78 (80)
224 3h6n_A Plexin-D1; structural g 88.8 0.54 1.9E-05 31.9 4.2 59 50-108 15-99 (127)
225 1oey_A P67-PHOX, neutrophil cy 88.8 0.24 8.3E-06 31.2 2.3 38 52-89 14-51 (83)
226 3qa8_A MGC80376 protein; kinas 88.7 0.74 2.5E-05 39.3 5.9 67 50-116 320-398 (676)
227 2l32_A Small archaeal modifier 87.3 0.52 1.8E-05 28.8 3.1 51 44-98 3-53 (74)
228 4eut_A Serine/threonine-protei 86.8 0.88 3E-05 35.2 4.9 63 53-115 323-389 (396)
229 2r2o_A Plexin-B1; effector dom 86.4 0.42 1.4E-05 32.9 2.5 56 51-106 40-121 (138)
230 3jyu_A Ubiquitin carboxyl-term 85.2 1.5 5.3E-05 32.2 5.3 56 54-109 154-216 (231)
231 1ryj_A Unknown; beta/alpha pro 84.1 2.3 7.9E-05 25.2 4.9 45 55-103 17-61 (70)
232 2ylm_A Ubiquitin carboxyl-term 83.1 0.72 2.5E-05 38.2 2.9 33 53-85 37-69 (530)
233 3ivf_A Talin-1; FERM domain, c 80.9 1.1 3.7E-05 35.0 3.1 53 51-103 12-74 (371)
234 2juo_A GA-binding protein alph 80.9 1.8 6E-05 27.4 3.4 42 2-43 23-65 (89)
235 1vd2_A Protein kinase C, IOTA 76.1 6.7 0.00023 24.8 5.2 47 44-90 7-55 (89)
236 4a3p_A Ubiquitin carboxyl-term 75.1 2.2 7.5E-05 31.0 3.1 55 54-108 142-203 (217)
237 1tyg_B YJBS; alpha beta barrel 72.0 11 0.00038 23.5 5.5 52 56-111 30-86 (87)
238 2al3_A TUG long isoform; TUG U 68.7 1.6 5.5E-05 27.9 0.9 41 2-42 40-81 (90)
239 1wxm_A A-RAF proto-oncogene se 68.1 6.2 0.00021 24.9 3.6 42 44-85 10-51 (86)
240 3hm6_X Plexin-B1; structural g 67.6 5.1 0.00017 34.0 4.0 57 52-108 274-356 (644)
241 1wgr_A Growth factor receptor- 66.9 3.1 0.00011 27.0 2.0 42 44-85 12-54 (100)
242 4gmv_A RAS-associated and plec 66.1 4.7 0.00016 30.7 3.2 56 46-101 36-92 (281)
243 1f0z_A THis protein; ubiquitin 63.1 10 0.00036 21.8 3.8 46 50-101 6-55 (66)
244 2bps_A YUKD protein; ubiquitin 61.1 2.9 9.9E-05 26.0 1.0 28 12-39 52-80 (81)
245 1c1y_B Proto-onkogene serine/t 60.0 6.2 0.00021 24.3 2.4 42 44-85 4-45 (77)
246 1rws_A Hypothetical protein PF 59.8 4.1 0.00014 24.6 1.6 42 55-100 24-65 (77)
247 1fm0_D Molybdopterin convertin 59.7 12 0.0004 22.2 3.7 47 54-101 19-70 (81)
248 3ig3_A Plxna3 protein; plexin 58.8 13 0.00044 31.5 4.8 58 51-108 246-329 (627)
249 3qij_A Protein 4.1; cytoskelet 58.7 6.2 0.00021 29.8 2.8 57 44-100 20-82 (296)
250 3hk0_A Growth factor receptor- 58.6 4.7 0.00016 30.3 2.0 58 44-101 11-69 (256)
251 2q5w_D Molybdopterin convertin 58.3 9.4 0.00032 22.5 3.1 48 53-101 17-66 (77)
252 2cu3_A Unknown function protei 57.2 15 0.00052 21.0 3.8 45 50-101 5-53 (64)
253 1vjk_A Molybdopterin convertin 55.4 29 0.001 21.5 5.2 49 53-101 28-87 (98)
254 3po0_A Small archaeal modifier 55.4 25 0.00086 21.2 4.8 50 52-101 18-78 (89)
255 1rrb_A RAF-1 RBD, RAF proto-on 51.6 25 0.00084 23.0 4.3 42 44-85 21-62 (107)
256 3rpf_C Molybdopterin convertin 51.3 31 0.0011 20.1 4.6 46 55-101 15-63 (74)
257 1ip9_A BEM1 protein; ubiquitin 50.5 37 0.0013 21.2 4.9 29 50-78 20-48 (85)
258 2l05_A Serine/threonine-protei 50.0 11 0.00036 24.2 2.3 42 44-85 20-61 (95)
259 4e74_A Plexin-A4; RBD, structu 46.3 17 0.00057 24.1 3.0 57 51-107 26-108 (117)
260 3ny5_A Serine/threonine-protei 43.1 18 0.00061 23.2 2.6 42 44-85 16-57 (96)
261 1h4r_A Merlin; FERM, neurofibr 42.3 15 0.00052 27.5 2.6 57 44-101 25-86 (314)
262 2k5p_A THis protein, thiamine- 42.1 25 0.00085 21.2 3.1 58 50-113 6-70 (78)
263 2kl0_A Putative thiamin biosyn 41.2 39 0.0013 20.0 3.9 56 50-112 6-65 (73)
264 3tca_A Amyloid beta A4 precurs 41.2 28 0.00097 25.3 3.9 38 44-81 37-74 (291)
265 2i1j_A Moesin; FERM, coiled-co 41.0 17 0.00058 30.3 2.9 58 44-102 7-70 (575)
266 2v1y_A Phosphatidylinositol-4, 39.2 24 0.00083 23.0 2.9 58 44-101 22-93 (108)
267 1ef1_A Moesin; membrane, FERM 38.9 13 0.00044 27.6 1.7 57 44-101 4-66 (294)
268 2c7h_A RBBP6, retinoblastoma-b 36.2 24 0.00083 22.1 2.4 31 54-84 20-51 (86)
269 2ylm_A Ubiquitin carboxyl-term 36.0 15 0.00052 30.2 1.8 31 50-80 449-479 (530)
270 3au4_A Myosin-X; protein-prote 35.9 19 0.00066 29.4 2.4 43 44-86 219-263 (555)
271 2al6_A Focal adhesion kinase 1 34.7 34 0.0012 26.5 3.6 45 42-86 8-57 (375)
272 2eel_A Cell death activator CI 34.3 50 0.0017 20.8 3.7 50 44-95 12-63 (91)
273 3r8s_T 50S ribosomal protein L 34.0 79 0.0027 19.8 4.6 41 52-92 28-69 (93)
274 2zjd_A Microtubule-associated 34.0 46 0.0016 22.3 3.7 45 56-100 57-103 (130)
275 1pqs_A Cell division control p 31.2 32 0.0011 20.9 2.3 36 53-88 3-43 (77)
276 3rui_B Autophagy-related prote 30.9 70 0.0024 20.9 4.1 45 56-100 51-96 (118)
277 1y8x_B Ubiquitin-activating en 30.7 49 0.0017 21.0 3.2 53 51-103 4-74 (98)
278 3m95_A Autophagy related prote 30.4 70 0.0024 21.2 4.1 45 56-100 57-102 (125)
279 2g1e_A Hypothetical protein TA 30.1 88 0.003 18.5 4.5 46 56-101 19-79 (90)
280 2r2q_A Gamma-aminobutyric acid 30.1 72 0.0025 20.4 4.1 45 56-100 48-93 (110)
281 1wgy_A RAP guanine nucleotide 29.8 40 0.0014 21.8 2.7 43 49-91 17-62 (104)
282 3h9d_A ATG8, microtubule-assoc 28.7 67 0.0023 21.1 3.8 45 56-100 52-97 (119)
283 3kuz_A Plexin-C1; structural g 26.2 47 0.0016 22.3 2.6 35 52-86 39-81 (126)
284 2lgx_A Fermitin family homolog 25.6 25 0.00085 23.1 1.1 24 19-42 78-102 (112)
285 2dhz_A RAP guanine nucleotide 25.1 1.1E+02 0.0038 20.2 4.3 43 49-91 17-68 (120)
286 3pvl_A Myosin VIIA isoform 1; 24.4 37 0.0013 28.6 2.3 43 44-86 266-309 (655)
287 2zjr_Q 50S ribosomal protein L 24.3 94 0.0032 19.5 3.7 37 54-90 25-62 (95)
288 3tve_T 50S ribosomal protein L 24.0 1.1E+02 0.0038 19.1 4.0 41 52-92 22-63 (92)
289 4gdk_A Ubiquitin-like protein 23.7 71 0.0024 19.9 3.0 46 55-100 23-70 (91)
290 3onh_A Ubiquitin-activating en 22.5 78 0.0027 21.2 3.1 50 60-109 18-75 (127)
291 1f2r_I Inhibitor of caspase-ac 22.3 82 0.0028 20.2 3.1 40 55-95 31-74 (100)
292 2kqs_B Death domain-associated 22.0 37 0.0013 16.4 1.0 15 117-131 4-18 (26)
293 1eo6_A GATE-16, golgi-associat 21.8 84 0.0029 20.4 3.2 45 56-100 49-94 (117)
294 1dd4_C 50S ribosomal protein L 20.7 76 0.0026 16.8 2.3 16 65-80 19-34 (40)
No 1
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.95 E-value=2.7e-29 Score=179.48 Aligned_cols=106 Identities=20% Similarity=0.123 Sum_probs=100.0
Q ss_pred CCcccCCCCCCeEEE-e-CCEECCCCCCccccccc-cccccccccc------cccCCCCCCCceeeccccCcHHHHHHHh
Q 040111 1 IEDKEGIPPGQQRSI-F-AGKQLEDGRTLADYKIQ-ESTLHLGWRA------DFCKNPDPQNITLEVESSDTIDNVKAKI 71 (133)
Q Consensus 1 I~~~~gip~~~Q~Li-~-~gk~L~D~~tL~~ygI~-~stl~L~~~~------i~Vk~~~g~~~~l~V~~~~tV~~LK~~I 71 (133)
|++.+|||+++|+|+ | +|++|+|+.+|++|||. +++++|+++. ++|++.+|+++.+++++++||++||++|
T Consensus 32 I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i 111 (159)
T 3rt3_B 32 ITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQV 111 (159)
T ss_dssp HHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCEEEEEECTTSCEEEEEECTTSBHHHHHHHH
T ss_pred HHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHH
Confidence 456789999999999 9 79999999999999999 9999999983 8999999999999999999999999999
Q ss_pred hhhcCCCCCceEEEeCCcccCccccccccccEEeE
Q 040111 72 QDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVG 106 (133)
Q Consensus 72 ~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~ 106 (133)
++++|+|+++|+|+|+|+.|+|+.+|++|+|...+
T Consensus 112 ~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~ 146 (159)
T 3rt3_B 112 SGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLS 146 (159)
T ss_dssp HHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTC
T ss_pred HHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCC
Confidence 99999999999999999999999999999985444
No 2
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.95 E-value=9.9e-29 Score=178.99 Aligned_cols=109 Identities=56% Similarity=0.704 Sum_probs=102.0
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc-----cccCCCCCCCceeeccccCcHHHHHHHhhhh
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA-----DFCKNPDPQNITLEVESSDTIDNVKAKIQDK 74 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~-----i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~ 74 (133)
|++++|||+++|+|+|+|++|+|+.+|++|||. +++|+|+++. ++|++.+|+++.+++++++||.+||++|+++
T Consensus 50 I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~ 129 (172)
T 3u30_A 50 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK 129 (172)
T ss_dssp HHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHH
T ss_pred HHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccccceeecccCcceeEEecCCCCHHHHHHHHHHH
Confidence 456789999999999999999999999999999 9999999886 8999999999999999999999999999999
Q ss_pred cCCCCCceEEEeCCcccCccccccccccEEeEEEE
Q 040111 75 KRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIF 109 (133)
Q Consensus 75 ~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~ 109 (133)
+|+|+++|+|+|+|+.|+|+.+|++|++...+.+.
T Consensus 130 ~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~ 164 (172)
T 3u30_A 130 EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 164 (172)
T ss_dssp HCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEE
T ss_pred hCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEE
Confidence 99999999999999999999999999986555443
No 3
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.94 E-value=2.3e-27 Score=167.25 Aligned_cols=108 Identities=56% Similarity=0.711 Sum_probs=100.3
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc-----cccCCCCCCCceeeccccCcHHHHHHHhhhh
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA-----DFCKNPDPQNITLEVESSDTIDNVKAKIQDK 74 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~-----i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~ 74 (133)
|++++|+|+++|+|+|+|++|+|+.+|++|||. ++++++..+. ++|++.+|+++.+++++++||++||++|+++
T Consensus 30 i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~ 109 (152)
T 3b08_A 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK 109 (152)
T ss_dssp HHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHH
T ss_pred HHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeecccccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHH
Confidence 356789999999999999999999999999999 9999999875 8899999999999999999999999999999
Q ss_pred cCCCCCceEEEeCCcccCccccccccccEEeEEE
Q 040111 75 KRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVI 108 (133)
Q Consensus 75 ~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~ 108 (133)
.|+|+++|+|+|+|+.|+|+.+|++|++...+.+
T Consensus 110 ~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i 143 (152)
T 3b08_A 110 EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 143 (152)
T ss_dssp HCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEE
T ss_pred hCcChhhEEEEECCEECCCCCCHHHcCCCCCCEE
Confidence 9999999999999999999999999998654433
No 4
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.75 E-value=5.4e-19 Score=116.38 Aligned_cols=63 Identities=6% Similarity=-0.086 Sum_probs=60.6
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVG 106 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~ 106 (133)
|+||+++|+++.++++|++||.+||++|++++|+||++|||+|+|++|+|+.+|+||+|...+
T Consensus 24 I~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgs 86 (93)
T 3plu_A 24 VVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQT 86 (93)
T ss_dssp EEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTC
T ss_pred EEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999997544
No 5
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=7.9e-19 Score=114.58 Aligned_cols=75 Identities=20% Similarity=0.085 Sum_probs=65.8
Q ss_pred cccccCCCCCCCceeecc--ccCcHHHHHHHh-hhhcCCCCCceEEEeCCcccCcccccccccc-EEeEEEEeCceeee
Q 040111 42 RADFCKNPDPQNITLEVE--SSDTIDNVKAKI-QDKKRIPPPAEADLLKFPFFFFEEVLSFFWF-VVVGVIFCGCRVNF 116 (133)
Q Consensus 42 ~~i~Vk~~~g~~~~l~V~--~~~tV~~LK~~I-~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~-~~~~~~~~~~~~~~ 116 (133)
.+|+||+++|++++++++ +++||.++|++| ++++|+|+++|||+|+|+.|+|+.+|++|+| ...+.+.+-+..|+
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~~ 80 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPNL 80 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCCc
Confidence 358999999999988866 999999999999 9999999999999999999999999999999 46666666555554
No 6
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=4.5e-18 Score=113.60 Aligned_cols=59 Identities=10% Similarity=-0.068 Sum_probs=55.3
Q ss_pred CCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEE
Q 040111 51 PQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIF 109 (133)
Q Consensus 51 g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~ 109 (133)
++.+.++|++++||.+||++|++++|+||++|+|+|+|++|+|+.||++|+|...+.|+
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~ 87 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAM 87 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEE
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEE
Confidence 67899999999999999999999999999999999999999999999999998766554
No 7
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.71 E-value=4.3e-18 Score=110.27 Aligned_cols=74 Identities=16% Similarity=0.107 Sum_probs=60.0
Q ss_pred cccccccccc-----cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEE
Q 040111 34 ESTLHLGWRA-----DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVI 108 (133)
Q Consensus 34 ~stl~L~~~~-----i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~ 108 (133)
+++++++++. ++||+.+|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|++ ..+.+
T Consensus 5 ~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i 83 (88)
T 4eew_A 5 NDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVI 83 (88)
T ss_dssp ----------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEE
T ss_pred CCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEE
Confidence 5566665543 89999999999999999999999999999999999999999999999999999999998 44433
No 8
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=5e-18 Score=113.37 Aligned_cols=65 Identities=12% Similarity=0.028 Sum_probs=61.2
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEE
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGV 107 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~ 107 (133)
.|+||+++|+++.+++++++||.+||++|++++|+|+++|||+|+|++|+|+.+|++|+|...+.
T Consensus 30 ~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gst 94 (100)
T 1uh6_A 30 EVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMN 94 (100)
T ss_dssp EEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEE
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCE
Confidence 39999999999999999999999999999999999999999999999999999999999865543
No 9
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.70 E-value=7.6e-18 Score=106.96 Aligned_cols=67 Identities=12% Similarity=0.067 Sum_probs=62.1
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEE
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIF 109 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~ 109 (133)
.|+||+.+|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|++...+.+.
T Consensus 6 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~ 72 (79)
T 3phx_B 6 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVF 72 (79)
T ss_dssp EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEE
T ss_pred EEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEE
Confidence 3899999999999999999999999999999999999999999999999999999999987655443
No 10
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.67 E-value=2.1e-17 Score=107.42 Aligned_cols=66 Identities=17% Similarity=0.263 Sum_probs=61.0
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEE
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVI 108 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~ 108 (133)
.|+|++.+|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|...+.+
T Consensus 2 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l 67 (88)
T 4fbj_B 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVL 67 (88)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEE
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEE
Confidence 378999999999999999999999999999999999999999999999999999999998655433
No 11
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.67 E-value=1.1e-17 Score=108.15 Aligned_cols=66 Identities=21% Similarity=0.180 Sum_probs=61.5
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcc-cCccccccccccEEeEEE
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPF-FFFEEVLSFFWFVVVGVI 108 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~-L~d~~tL~dy~~~~~~~~ 108 (133)
+|+|++.+|+++.+++++++||++||++|++++|+|+++|+|+|+|++ |+|+.+|++|++...+.+
T Consensus 12 ~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i 78 (84)
T 2kk8_A 12 KFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDI 78 (84)
T ss_dssp EEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCE
T ss_pred EEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEE
Confidence 489999999999999999999999999999999999999999999999 999999999998655543
No 12
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.66 E-value=4e-17 Score=109.01 Aligned_cols=85 Identities=13% Similarity=0.139 Sum_probs=60.2
Q ss_pred CCCccccccc-cccccccccc---cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccc
Q 040111 24 GRTLADYKIQ-ESTLHLGWRA---DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSF 99 (133)
Q Consensus 24 ~~tL~~ygI~-~stl~L~~~~---i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~d 99 (133)
+...++|.|. -..+.+.... |+|++ +|+.+.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++
T Consensus 7 ~~~~~~~~~~~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ 85 (101)
T 3m63_B 7 HHPMSDYDIPTTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVES 85 (101)
T ss_dssp ----------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTT
T ss_pred cCCccccCCCcceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHH
Confidence 3456788877 4444433332 78887 88999999999999999999999999999999999999999999999999
Q ss_pred cccEEeEEEE
Q 040111 100 FWFVVVGVIF 109 (133)
Q Consensus 100 y~~~~~~~~~ 109 (133)
|++...+.|.
T Consensus 86 ~gI~~g~tI~ 95 (101)
T 3m63_B 86 YHIQDGHSVH 95 (101)
T ss_dssp TTCCTTEEEE
T ss_pred CCCCCCCEEE
Confidence 9997665544
No 13
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=5.3e-17 Score=105.56 Aligned_cols=71 Identities=34% Similarity=0.344 Sum_probs=62.2
Q ss_pred cccccccccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEE
Q 040111 38 HLGWRADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVI 108 (133)
Q Consensus 38 ~L~~~~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~ 108 (133)
||....++|++.+|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|++.+.+.+
T Consensus 6 ~~~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i 76 (88)
T 1sif_A 6 HLQGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 76 (88)
T ss_dssp ----CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEE
T ss_pred cccceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEE
Confidence 34455699999999999999999999999999999999999999999999999999999999998655443
No 14
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.65 E-value=7.5e-17 Score=104.75 Aligned_cols=65 Identities=18% Similarity=0.130 Sum_probs=60.4
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEE
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVI 108 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~ 108 (133)
.|+||+.+|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|++ ..+.+
T Consensus 7 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i 71 (90)
T 4dwf_A 7 EVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVI 71 (90)
T ss_dssp EEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEE
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEE
Confidence 389999999999999999999999999999999999999999999999999999999998 44443
No 15
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.65 E-value=6.6e-17 Score=108.71 Aligned_cols=67 Identities=15% Similarity=0.038 Sum_probs=62.3
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEE
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIF 109 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~ 109 (133)
.|+||+.+|+.+.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|...+.|.
T Consensus 3 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~ 69 (106)
T 3m62_B 3 SLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVV 69 (106)
T ss_dssp CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEE
Confidence 4889999999999999999999999999999999999999999999999999999999997665443
No 16
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.64 E-value=6.7e-17 Score=107.56 Aligned_cols=64 Identities=19% Similarity=0.087 Sum_probs=57.9
Q ss_pred cccCCCCCCCcee--eccccCcHHHHHHHh-hhhcCCCCCceEEEeCCcccCcccccccccc-EEeEE
Q 040111 44 DFCKNPDPQNITL--EVESSDTIDNVKAKI-QDKKRIPPPAEADLLKFPFFFFEEVLSFFWF-VVVGV 107 (133)
Q Consensus 44 i~Vk~~~g~~~~l--~V~~~~tV~~LK~~I-~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~-~~~~~ 107 (133)
|+||+++|+.+++ ++++++||.+||++| ++..|+|+++|||+|+|+.|+|+.+|++|+| ...+.
T Consensus 22 I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~t 89 (98)
T 4a20_A 22 LTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANST 89 (98)
T ss_dssp EEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCE
T ss_pred EEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCE
Confidence 8999999998777 455999999999999 8888999999999999999999999999999 54443
No 17
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.64 E-value=5.1e-17 Score=105.57 Aligned_cols=66 Identities=11% Similarity=0.033 Sum_probs=60.9
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEE
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVI 108 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~ 108 (133)
.|+|++.+|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|...+.+
T Consensus 6 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i 71 (88)
T 2hj8_A 6 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTV 71 (88)
T ss_dssp EEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEE
T ss_pred EEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEE
Confidence 388999999999999999999999999999999999999999999999999999999998655444
No 18
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.64 E-value=1e-16 Score=100.20 Aligned_cols=67 Identities=16% Similarity=0.258 Sum_probs=61.3
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEE
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIF 109 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~ 109 (133)
.|+|++.+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+.+.+.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~ 68 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLH 68 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEE
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEE
Confidence 3789999999999999999999999999999999999999999999999999999999986555443
No 19
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.64 E-value=9e-17 Score=104.83 Aligned_cols=66 Identities=38% Similarity=0.390 Sum_probs=61.9
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIF 109 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~ 109 (133)
|+||+.+|+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|...+.+.
T Consensus 20 i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~ 85 (91)
T 3v6c_B 20 IFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 85 (91)
T ss_dssp EEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEE
T ss_pred EEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEE
Confidence 899999999999999999999999999999999999999999999999999999999997655444
No 20
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.64 E-value=7.5e-17 Score=103.96 Aligned_cols=67 Identities=16% Similarity=0.257 Sum_probs=62.4
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEEe
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIFC 110 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~~ 110 (133)
|+|++.+|+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|...+.+.+
T Consensus 15 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l 81 (88)
T 3dbh_I 15 IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHL 81 (88)
T ss_dssp EEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEE
T ss_pred EEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEE
Confidence 8999999999999999999999999999999999999999999999999999999999876655543
No 21
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=9.2e-17 Score=101.55 Aligned_cols=66 Identities=12% Similarity=0.071 Sum_probs=60.4
Q ss_pred ccccCCCCCCCc-eee-ccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEE
Q 040111 43 ADFCKNPDPQNI-TLE-VESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVI 108 (133)
Q Consensus 43 ~i~Vk~~~g~~~-~l~-V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~ 108 (133)
.|+|++.+|+++ .++ +++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|++...+.+
T Consensus 4 ~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i 71 (78)
T 2faz_A 4 WIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTI 71 (78)
T ss_dssp EEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEE
T ss_pred EEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEE
Confidence 378999999985 999 999999999999999999999999999999999999999999998655444
No 22
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=1.2e-16 Score=102.22 Aligned_cols=65 Identities=40% Similarity=0.409 Sum_probs=60.6
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVI 108 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~ 108 (133)
|+|++.+|+++.+++++++||.+||++|++++++|+++|+|+|+|+.|+|+.+|++|++...+.+
T Consensus 6 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l 70 (85)
T 3mtn_B 6 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTL 70 (85)
T ss_dssp EEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEE
T ss_pred EEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEE
Confidence 88999999999999999999999999999999999999999999999999999999998654433
No 23
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.64 E-value=8e-17 Score=102.16 Aligned_cols=66 Identities=12% Similarity=0.043 Sum_probs=61.3
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEE
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVI 108 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~ 108 (133)
.|+|++.+|+++.++|++++||.+||++|+++.|+|+++|+|+|+|++|+|+.||++|++.....|
T Consensus 5 ~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i 70 (79)
T 2uyz_B 5 KLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVI 70 (79)
T ss_dssp EEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEE
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEE
Confidence 388999999999999999999999999999999999999999999999999999999998655543
No 24
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=7.3e-17 Score=103.28 Aligned_cols=63 Identities=38% Similarity=0.337 Sum_probs=59.4
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVG 106 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~ 106 (133)
|+|++.+|+++.+++++++||.+||++|++++++|+++|+|+|+|+.|+|+.+|++|++...+
T Consensus 6 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~ 68 (85)
T 3n3k_B 6 IVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHS 68 (85)
T ss_dssp EEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTC
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCC
Confidence 889999999999999999999999999999999999999999999999999999999985444
No 25
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.62 E-value=2.7e-16 Score=103.53 Aligned_cols=68 Identities=12% Similarity=0.174 Sum_probs=62.2
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhh---cCCCCCceEEEeCCcccCccccccccccEEeEEEEe
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDK---KRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIFC 110 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~---~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~~ 110 (133)
.|+||+.+|+.+.+++++++||++||++|++. +|+|+++|+|+|+|+.|+|+.+|++|+|...+.+.+
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l 72 (95)
T 1uel_A 2 QVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVV 72 (95)
T ss_dssp EEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEE
Confidence 37899999999999999999999999999999 899999999999999999999999999976665543
No 26
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.62 E-value=1.8e-16 Score=101.60 Aligned_cols=67 Identities=12% Similarity=0.132 Sum_probs=61.3
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhh---cCCCCCceEEEeCCcccCccccccccccEEeEEEE
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDK---KRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIF 109 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~---~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~ 109 (133)
.|+|++.+|+.+.+++++++||++||++|+++ +|+|+++|+|+|+|+.|+|+.+|++|++...+.+.
T Consensus 7 ~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~ 76 (85)
T 2wyq_A 7 TITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVV 76 (85)
T ss_dssp EEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEE
T ss_pred EEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEE
Confidence 38899999999999999999999999999998 89999999999999999999999999987655443
No 27
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=2.1e-16 Score=104.61 Aligned_cols=66 Identities=41% Similarity=0.419 Sum_probs=61.7
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIF 109 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~ 109 (133)
|+||+.+|+.+.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|...+.|.
T Consensus 25 I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~ 90 (98)
T 4hcn_B 25 IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 90 (98)
T ss_dssp EEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEE
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEE
Confidence 899999999999999999999999999999999999999999999999999999999987655444
No 28
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.62 E-value=2.1e-16 Score=101.88 Aligned_cols=64 Identities=17% Similarity=0.173 Sum_probs=59.8
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGV 107 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~ 107 (133)
|+|++.+|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|++...+.
T Consensus 10 i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~ 73 (87)
T 1wh3_A 10 VFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDT 73 (87)
T ss_dssp EEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEE
T ss_pred EEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCE
Confidence 8899999999999999999999999999999999999999999999999999999999854443
No 29
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.61 E-value=2.6e-16 Score=103.71 Aligned_cols=64 Identities=19% Similarity=0.125 Sum_probs=59.1
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCcc-ccccccccEEeEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFE-EVLSFFWFVVVGVI 108 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~-~tL~dy~~~~~~~~ 108 (133)
|+||++++ ++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+ .+|++|++...+.+
T Consensus 18 I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl 82 (94)
T 2kan_A 18 VTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEI 82 (94)
T ss_dssp EEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEE
T ss_pred EEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEE
Confidence 88999877 889999999999999999999999999999999999999999 99999998655544
No 30
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.61 E-value=2.5e-16 Score=98.46 Aligned_cols=67 Identities=39% Similarity=0.398 Sum_probs=61.1
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEE
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIF 109 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~ 109 (133)
.++|++.+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++...+.+.
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~ 68 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLH 68 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEE
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEE
Confidence 3788999999999999999999999999999999999999999999999999999999986555443
No 31
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.6e-16 Score=99.80 Aligned_cols=66 Identities=15% Similarity=0.086 Sum_probs=60.7
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIF 109 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~ 109 (133)
++|++.+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++...+.+.
T Consensus 10 i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~ 75 (81)
T 2dzi_A 10 LTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLN 75 (81)
T ss_dssp EEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCE
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEE
Confidence 788888899999999999999999999999999999999999999999999999999997655443
No 32
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.61 E-value=3.1e-16 Score=103.57 Aligned_cols=77 Identities=36% Similarity=0.343 Sum_probs=62.9
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEE-----eCceeeee
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIF-----CGCRVNFW 117 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~-----~~~~~~~~ 117 (133)
.|+|++++|+++.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|++.+.+.|. .||.--+|
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~~ 81 (98)
T 1yx5_B 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPNS 81 (98)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC-----
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCcc
Confidence 3789999999999999999999999999999999999999999999999999999999986555443 56666777
Q ss_pred ec
Q 040111 118 NA 119 (133)
Q Consensus 118 ~~ 119 (133)
.-
T Consensus 82 ~~ 83 (98)
T 1yx5_B 82 SS 83 (98)
T ss_dssp --
T ss_pred cc
Confidence 53
No 33
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.40 E-value=4.9e-17 Score=102.25 Aligned_cols=68 Identities=10% Similarity=0.073 Sum_probs=63.1
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEEe
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIFC 110 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~~ 110 (133)
+|+|++.+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++...+.+.+
T Consensus 2 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l 69 (76)
T 3b1l_X 2 IVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHI 69 (76)
Confidence 47899999999999999999999999999999999999999999999999999999999987765544
No 34
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.61 E-value=3.2e-16 Score=102.78 Aligned_cols=64 Identities=41% Similarity=0.404 Sum_probs=59.7
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeE
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVG 106 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~ 106 (133)
.|+|++.+|+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|++...+
T Consensus 3 ~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~ 66 (96)
T 3k9o_B 3 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 66 (96)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTC
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCC
Confidence 3789999999999999999999999999999999999999999999999999999999985443
No 35
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.60 E-value=2.5e-16 Score=98.96 Aligned_cols=66 Identities=11% Similarity=0.086 Sum_probs=60.5
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEE
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIF 109 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~ 109 (133)
.++|++ +|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++...+.+.
T Consensus 6 ~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~ 71 (77)
T 2bwf_A 6 NIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVH 71 (77)
T ss_dssp EEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEE
T ss_pred EEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEE
Confidence 478888 888999999999999999999999999999999999999999999999999997665544
No 36
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.60 E-value=2.7e-16 Score=104.04 Aligned_cols=65 Identities=12% Similarity=0.046 Sum_probs=60.8
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVI 108 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~ 108 (133)
|+|++.+|+++.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.....|
T Consensus 24 I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I 88 (97)
T 1wyw_B 24 LKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVI 88 (97)
T ss_dssp EEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEE
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEE
Confidence 89999999999999999999999999999999999999999999999999999999998654433
No 37
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.60 E-value=6.9e-16 Score=105.57 Aligned_cols=60 Identities=8% Similarity=0.016 Sum_probs=56.6
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhh------hcCC--CCCceEEEeCCcccCccccccccccE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQD------KKRI--PPPAEADLLKFPFFFFEEVLSFFWFV 103 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~------~~gI--p~~~q~L~~~gk~L~d~~tL~dy~~~ 103 (133)
|+||+++|++++++|++++||++||++|++ ++|+ |+++|||+|+|++|+|+.+|++|+|.
T Consensus 19 I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~ 86 (116)
T 1wgh_A 19 LRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLP 86 (116)
T ss_dssp EEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCC
T ss_pred EEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCC
Confidence 899999999999999999999999999999 6675 69999999999999999999999974
No 38
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=5.7e-16 Score=100.28 Aligned_cols=64 Identities=11% Similarity=0.065 Sum_probs=59.0
Q ss_pred cccCCCCC-CCcee-eccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEE
Q 040111 44 DFCKNPDP-QNITL-EVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGV 107 (133)
Q Consensus 44 i~Vk~~~g-~~~~l-~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~ 107 (133)
|+|++.+| +++.+ ++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|++...+.
T Consensus 10 i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~ 75 (89)
T 1wy8_A 10 IQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDI 75 (89)
T ss_dssp EEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCE
T ss_pred EEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCE
Confidence 88999989 68999 599999999999999999999999999999999999999999999854443
No 39
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.59 E-value=8.8e-16 Score=102.30 Aligned_cols=65 Identities=11% Similarity=0.013 Sum_probs=57.3
Q ss_pred cccCCCCCC--CceeeccccCcHHHHHHHhhhh-cCCC-CCceEEEeCCcccCcccccccc--ccEEeEEE
Q 040111 44 DFCKNPDPQ--NITLEVESSDTIDNVKAKIQDK-KRIP-PPAEADLLKFPFFFFEEVLSFF--WFVVVGVI 108 (133)
Q Consensus 44 i~Vk~~~g~--~~~l~V~~~~tV~~LK~~I~~~-~gIp-~~~q~L~~~gk~L~d~~tL~dy--~~~~~~~~ 108 (133)
|+||+++++ .+++++++++||.+||++|+++ .|+| +++|||+|+|++|+|+.+|++| +|.....+
T Consensus 26 I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~ti 96 (99)
T 2kdb_A 26 LIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMV 96 (99)
T ss_dssp EEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEE
T ss_pred EEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEE
Confidence 899999988 5688899999999999999996 5666 5999999999999999999999 98755544
No 40
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=1.1e-15 Score=99.99 Aligned_cols=65 Identities=14% Similarity=0.154 Sum_probs=57.7
Q ss_pred cccCCCCCC--CceeeccccCcHHHHHHHhhhhc--CCCCCceEEEeCCcccCcccccccc--ccEEeEEE
Q 040111 44 DFCKNPDPQ--NITLEVESSDTIDNVKAKIQDKK--RIPPPAEADLLKFPFFFFEEVLSFF--WFVVVGVI 108 (133)
Q Consensus 44 i~Vk~~~g~--~~~l~V~~~~tV~~LK~~I~~~~--gIp~~~q~L~~~gk~L~d~~tL~dy--~~~~~~~~ 108 (133)
|+||+.+++ .+.+++++++||.+||++|++++ |+|+++|+|+|+|+.|+|+.+|++| ++.....+
T Consensus 10 i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i 80 (93)
T 1wgd_A 10 LLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVL 80 (93)
T ss_dssp EEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEE
T ss_pred EEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEE
Confidence 889999888 56667779999999999999998 9999999999999999999999999 88654433
No 41
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.58 E-value=6.9e-16 Score=99.82 Aligned_cols=66 Identities=14% Similarity=0.113 Sum_probs=59.8
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIF 109 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~ 109 (133)
.++++.+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++...+.++
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~ 79 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLM 79 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEE
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEE
Confidence 456677899999999999999999999999999999999999999999999999999997666444
No 42
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=7.8e-16 Score=104.76 Aligned_cols=65 Identities=42% Similarity=0.413 Sum_probs=60.7
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVI 108 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~ 108 (133)
|+|++.+|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|++...+.+
T Consensus 12 i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI 76 (114)
T 2kdi_A 12 IFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTL 76 (114)
T ss_dssp EEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEE
T ss_pred EEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEE
Confidence 88999999999999999999999999999999999999999999999999999999998554433
No 43
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.58 E-value=4.7e-16 Score=106.42 Aligned_cols=61 Identities=15% Similarity=0.074 Sum_probs=54.9
Q ss_pred cccCCCCCC-CceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEE
Q 040111 44 DFCKNPDPQ-NITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVV 104 (133)
Q Consensus 44 i~Vk~~~g~-~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~ 104 (133)
+|++...++ ++.+++++++||.+||++|++++|+||++|||+|+|+.|+|++||++|+|..
T Consensus 3 vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~ 64 (118)
T 4ajy_B 3 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTS 64 (118)
T ss_dssp EEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCG
T ss_pred eEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCc
Confidence 445555555 6888999999999999999999999999999999999999999999999976
No 44
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.58 E-value=4.8e-16 Score=106.54 Aligned_cols=60 Identities=15% Similarity=0.082 Sum_probs=54.3
Q ss_pred cccCCCCCC-CceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccE
Q 040111 44 DFCKNPDPQ-NITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFV 103 (133)
Q Consensus 44 i~Vk~~~g~-~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~ 103 (133)
++++...++ ++.++|++++||++||++|++++|||+++|||+|+|++|+|+++|++|+|.
T Consensus 3 mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~ 63 (118)
T 2fnj_B 3 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFT 63 (118)
T ss_dssp EEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCC
T ss_pred EEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcc
Confidence 345554555 588999999999999999999999999999999999999999999999998
No 45
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.57 E-value=2.4e-15 Score=101.65 Aligned_cols=65 Identities=22% Similarity=0.226 Sum_probs=59.9
Q ss_pred cccCCC---CCCCceeeccc-cCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEE
Q 040111 44 DFCKNP---DPQNITLEVES-SDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVI 108 (133)
Q Consensus 44 i~Vk~~---~g~~~~l~V~~-~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~ 108 (133)
|+|+++ +|+.+.+++++ ++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|...+.+
T Consensus 30 i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l 98 (111)
T 1we6_A 30 IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEIL 98 (111)
T ss_dssp EEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEE
T ss_pred EEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEE
Confidence 889988 88999999998 999999999999999999999999999999999999999998655433
No 46
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.57 E-value=1.2e-15 Score=105.63 Aligned_cols=62 Identities=8% Similarity=0.001 Sum_probs=57.8
Q ss_pred cccccCCCCCCCceeeccccCcHHHHHHHhhh------hcCC--CCCceEEEeCCcccCccccccccccE
Q 040111 42 RADFCKNPDPQNITLEVESSDTIDNVKAKIQD------KKRI--PPPAEADLLKFPFFFFEEVLSFFWFV 103 (133)
Q Consensus 42 ~~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~------~~gI--p~~~q~L~~~gk~L~d~~tL~dy~~~ 103 (133)
..|+||+++|+++++++++++||++||++|++ ++|+ |+++|||+|+|++|+|+.+|++|+|.
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~ 87 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLP 87 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCC
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCC
Confidence 34899999999999999999999999999999 7788 49999999999999999999999985
No 47
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.57 E-value=1.2e-15 Score=103.28 Aligned_cols=67 Identities=39% Similarity=0.399 Sum_probs=61.7
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEE
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIF 109 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~ 109 (133)
.|+||+.+|+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|...+.|.
T Consensus 37 ~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~ 103 (111)
T 3vdz_A 37 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 103 (111)
T ss_dssp EEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEE
Confidence 3899999999999999999999999999999999999999999999999999999999986554443
No 48
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.56 E-value=1e-15 Score=100.54 Aligned_cols=64 Identities=20% Similarity=0.180 Sum_probs=58.8
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIF 109 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~ 109 (133)
|+|++ |+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|++...+.+.
T Consensus 22 I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~ 85 (93)
T 2l7r_A 22 LFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLE 85 (93)
T ss_dssp EEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEE
T ss_pred EEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEE
Confidence 78888 78899999999999999999999999999999999999999999999999986555443
No 49
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.56 E-value=9.3e-16 Score=102.93 Aligned_cols=66 Identities=12% Similarity=0.039 Sum_probs=61.2
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIF 109 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~ 109 (133)
|+||+.+|+.+.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|...+.+.
T Consensus 26 I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~ 91 (106)
T 1ttn_A 26 LRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQ 91 (106)
T ss_dssp EEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEE
T ss_pred EEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEE
Confidence 899999999999999999999999999999999999999999999999999999999997555443
No 50
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.56 E-value=1.7e-15 Score=104.86 Aligned_cols=62 Identities=11% Similarity=0.055 Sum_probs=56.9
Q ss_pred ccccCCCCCCCc-eeeccccCcHHHHHHHh-----hhhcCCCC--CceEEEeCCcccCccccccccccEE
Q 040111 43 ADFCKNPDPQNI-TLEVESSDTIDNVKAKI-----QDKKRIPP--PAEADLLKFPFFFFEEVLSFFWFVV 104 (133)
Q Consensus 43 ~i~Vk~~~g~~~-~l~V~~~~tV~~LK~~I-----~~~~gIp~--~~q~L~~~gk~L~d~~tL~dy~~~~ 104 (133)
.|++|+.+|+.+ ++++++++||++||++| ++++|+|+ ++|||+|+|++|+|+.||++|+|..
T Consensus 18 ~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~ 87 (126)
T 1se9_A 18 EIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPV 87 (126)
T ss_dssp EEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCT
T ss_pred EEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCc
Confidence 389999999888 79999999999999999 56778997 8999999999999999999999864
No 51
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.56 E-value=3.7e-15 Score=100.73 Aligned_cols=66 Identities=39% Similarity=0.406 Sum_probs=60.9
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIF 109 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~ 109 (133)
|+|++.+|+.+.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|++...+.|.
T Consensus 38 I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~ 103 (111)
T 2ojr_A 38 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 103 (111)
T ss_dssp EEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEE
T ss_pred EEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEE
Confidence 889999999999999999999999999999999999999999999999999999999986555443
No 52
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.55 E-value=2e-15 Score=100.61 Aligned_cols=65 Identities=11% Similarity=0.043 Sum_probs=59.4
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIF 109 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~ 109 (133)
|+|++. |+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++...+.|.
T Consensus 28 I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~ 92 (101)
T 2klc_A 28 VTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVH 92 (101)
T ss_dssp EEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEE
T ss_pred EEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEE
Confidence 788888 78899999999999999999999999999999999999999999999999987555443
No 53
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.55 E-value=4.6e-15 Score=107.34 Aligned_cols=62 Identities=44% Similarity=0.438 Sum_probs=58.9
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEE
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVV 104 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~ 104 (133)
+|+||+.+|+++.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|++..
T Consensus 2 qI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~ 63 (169)
T 3l0w_B 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 63 (169)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCT
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCC
Confidence 37899999999999999999999999999999999999999999999999999999999743
No 54
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.54 E-value=4.6e-16 Score=107.75 Aligned_cols=66 Identities=41% Similarity=0.418 Sum_probs=0.0
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEE
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVI 108 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~ 108 (133)
.|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|...+.+
T Consensus 2 ~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti 67 (128)
T 3u5e_m 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 67 (128)
T ss_dssp ------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEE
Confidence 378999999999999999999999999999999999999999999999999999999998665543
No 55
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.54 E-value=1.8e-15 Score=99.40 Aligned_cols=65 Identities=9% Similarity=0.010 Sum_probs=60.2
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIF 109 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~ 109 (133)
|+|++. |+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.....|.
T Consensus 20 i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~ 84 (96)
T 1wx8_A 20 VSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVH 84 (96)
T ss_dssp EEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEE
T ss_pred EEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEE
Confidence 788888 88999999999999999999999999999999999999999999999999997665554
No 56
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.54 E-value=2e-15 Score=100.47 Aligned_cols=65 Identities=14% Similarity=0.063 Sum_probs=59.2
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIF 109 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~ 109 (133)
|+|++.+|+ +.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|++...+.+.
T Consensus 25 I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~ 89 (100)
T 1yqb_A 25 VTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVH 89 (100)
T ss_dssp EEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEE
T ss_pred EEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEE
Confidence 889998886 68999999999999999999999999999999999999999999999987555443
No 57
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=5.1e-15 Score=96.51 Aligned_cols=69 Identities=16% Similarity=0.080 Sum_probs=61.3
Q ss_pred cccccCCCCCCCc--ee-eccccCcHHHHHHHhhhh-cCCCCCceEEEeC--CcccCccccccccccEEeEEEEe
Q 040111 42 RADFCKNPDPQNI--TL-EVESSDTIDNVKAKIQDK-KRIPPPAEADLLK--FPFFFFEEVLSFFWFVVVGVIFC 110 (133)
Q Consensus 42 ~~i~Vk~~~g~~~--~l-~V~~~~tV~~LK~~I~~~-~gIp~~~q~L~~~--gk~L~d~~tL~dy~~~~~~~~~~ 110 (133)
..|+|++..|+.+ .+ +|++++||++||++|+++ .|+||++|+|+|. |+.|+|+.+|++|++...+.+++
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 4589999988775 47 999999999999999995 8999999999976 99999999999999987777665
No 58
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.53 E-value=4.1e-15 Score=105.65 Aligned_cols=64 Identities=13% Similarity=-0.088 Sum_probs=59.8
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEE-e-CCcccCccccccccccEEeE
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADL-L-KFPFFFFEEVLSFFWFVVVG 106 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~-~-~gk~L~d~~tL~dy~~~~~~ 106 (133)
.|+||+.+|+++++++++++||++||++|++.+|+||++|+|+ | +|+.|+|+.+|++|+|...+
T Consensus 4 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~ 69 (159)
T 3rt3_B 4 DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGS 69 (159)
T ss_dssp EEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTC
T ss_pred EEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCC
Confidence 4889999999999999999999999999999999999999999 9 89999999999999985443
No 59
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.52 E-value=7.4e-15 Score=101.50 Aligned_cols=65 Identities=9% Similarity=0.019 Sum_probs=59.7
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIF 109 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~ 109 (133)
|+|++. |+.+.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|...+.|.
T Consensus 35 I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~ 99 (125)
T 1j8c_A 35 VTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVH 99 (125)
T ss_dssp EEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEE
T ss_pred EEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEE
Confidence 888888 88899999999999999999999999999999999999999999999999986555443
No 60
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.52 E-value=1.7e-15 Score=101.99 Aligned_cols=64 Identities=11% Similarity=-0.094 Sum_probs=58.4
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCC---------------CceEEEeCCcccC-ccccccccccEEeE
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPP---------------PAEADLLKFPFFF-FEEVLSFFWFVVVG 106 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~---------------~~q~L~~~gk~L~-d~~tL~dy~~~~~~ 106 (133)
.|+|++++|++++++|++++||++||++|++++|+|+ ++|+|+|+|+.|. |+.+|++|+|.+.+
T Consensus 9 ~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g~ 88 (105)
T 1v2y_A 9 TVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRD 88 (105)
T ss_dssp EEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSSE
T ss_pred EEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCCC
Confidence 3899999999999999999999999999999999988 4679999999997 56999999997655
No 61
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.51 E-value=4.8e-15 Score=96.71 Aligned_cols=68 Identities=15% Similarity=0.088 Sum_probs=60.0
Q ss_pred cccCCCCCCCcee-eccccCcHHHHHHHhhhhcCCCCCceEEE---eCCcccCccccccccccEEeE-EEEeCc
Q 040111 44 DFCKNPDPQNITL-EVESSDTIDNVKAKIQDKKRIPPPAEADL---LKFPFFFFEEVLSFFWFVVVG-VIFCGC 112 (133)
Q Consensus 44 i~Vk~~~g~~~~l-~V~~~~tV~~LK~~I~~~~gIp~~~q~L~---~~gk~L~d~~tL~dy~~~~~~-~~~~~~ 112 (133)
|+|+. .|+++.+ ++++++||.+||++|++++|+|+++|+|+ |+|++|+|+.+|++|+|.... +.+.|.
T Consensus 10 i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 10 IIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp EEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred EEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence 67775 6888999 99999999999999999999999999999 999999999999999986555 444444
No 62
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.51 E-value=5.1e-15 Score=108.95 Aligned_cols=65 Identities=40% Similarity=0.413 Sum_probs=61.0
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVI 108 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~ 108 (133)
|+||+.+|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|...+.+
T Consensus 108 I~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI 172 (189)
T 3q3f_A 108 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 172 (189)
T ss_dssp EEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEE
T ss_pred eeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEE
Confidence 89999999999999999999999999999999999999999999999999999999998554443
No 63
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.51 E-value=1.1e-15 Score=109.05 Aligned_cols=72 Identities=39% Similarity=0.391 Sum_probs=0.0
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEE-----EeCcee
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVI-----FCGCRV 114 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~-----~~~~~~ 114 (133)
+|+|++++|+++.++|++++||++||++|++.+|+|+++|+|+|+|++|+|+.+|++|+|...+.+ +.||+-
T Consensus 2 qI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGgK 78 (152)
T 3u5c_f 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGK 78 (152)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCCc
Confidence 378999999999999999999999999999999999999999999999999999999998655533 356643
No 64
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.51 E-value=1e-14 Score=98.02 Aligned_cols=60 Identities=15% Similarity=0.040 Sum_probs=55.6
Q ss_pred cccCCCCC--CCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccE
Q 040111 44 DFCKNPDP--QNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFV 103 (133)
Q Consensus 44 i~Vk~~~g--~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~ 103 (133)
++|++..+ .+++++|++++||++||++|++++||||++|||+|+|+.++|+.+|++|+|.
T Consensus 27 v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~ 88 (105)
T 4dbg_A 27 VSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVR 88 (105)
T ss_dssp EEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCC
T ss_pred EEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCC
Confidence 77888764 5788999999999999999999999999999999999999999999999993
No 65
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.50 E-value=5e-15 Score=98.71 Aligned_cols=67 Identities=7% Similarity=-0.004 Sum_probs=58.6
Q ss_pred cccCCCCC----CCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCcc-ccccccccEEeEEEEe
Q 040111 44 DFCKNPDP----QNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFE-EVLSFFWFVVVGVIFC 110 (133)
Q Consensus 44 i~Vk~~~g----~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~-~tL~dy~~~~~~~~~~ 110 (133)
|+|++.++ +.+.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+ .+|++|+|.....+++
T Consensus 10 I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l 81 (102)
T 1v5o_A 10 ITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVL 81 (102)
T ss_dssp EEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEE
T ss_pred EEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEE
Confidence 67777544 6889999999999999999999999999999999999999988 6999999976665443
No 66
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.50 E-value=9e-15 Score=97.96 Aligned_cols=66 Identities=14% Similarity=0.055 Sum_probs=59.3
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEEe
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIFC 110 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~~ 110 (133)
|+|+..+++ +.+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.....|.+
T Consensus 20 I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l 85 (106)
T 1wx7_A 20 VTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHL 85 (106)
T ss_dssp EEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEE
T ss_pred EEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEE
Confidence 788888776 689999999999999999999999999999999999999999999999865554443
No 67
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.50 E-value=6.7e-15 Score=106.05 Aligned_cols=62 Identities=42% Similarity=0.425 Sum_probs=59.1
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEE
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVV 104 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~ 104 (133)
.|+|++.+|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|..
T Consensus 22 ~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~ 83 (172)
T 3u30_A 22 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 83 (172)
T ss_dssp EEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCT
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcc
Confidence 38999999999999999999999999999999999999999999999999999999999844
No 68
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.50 E-value=5.9e-15 Score=97.55 Aligned_cols=68 Identities=10% Similarity=0.010 Sum_probs=59.0
Q ss_pred cccCCCCCCCc-eeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEE-EEeCce
Q 040111 44 DFCKNPDPQNI-TLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGV-IFCGCR 113 (133)
Q Consensus 44 i~Vk~~~g~~~-~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~-~~~~~~ 113 (133)
|+||. .|+.+ .+++++++||.+||++|++++|+|+++|+|+|+|+.|+|+ +|++|+|..... .+.|..
T Consensus 10 i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~ 79 (96)
T 1wgg_A 10 VTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSA 79 (96)
T ss_dssp EEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCC
T ss_pred EEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecc
Confidence 67774 57888 6999999999999999999999999999999999999999 999999976653 344443
No 69
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.9e-14 Score=95.95 Aligned_cols=65 Identities=15% Similarity=0.138 Sum_probs=57.5
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEe--CCcccCccccccccccEEeEEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLL--KFPFFFFEEVLSFFWFVVVGVIF 109 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~--~gk~L~d~~tL~dy~~~~~~~~~ 109 (133)
+++++.+|+++.+++++++||++||++|++++||||++|+|++ +|+ |+|+.+|++|++...+.+.
T Consensus 11 ~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~ 77 (100)
T 2dzm_A 11 DFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLY 77 (100)
T ss_dssp EEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEE
T ss_pred EEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEE
Confidence 5667778999999999999999999999999999999999996 666 9999999999997655443
No 70
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.47 E-value=3e-14 Score=96.79 Aligned_cols=58 Identities=14% Similarity=0.212 Sum_probs=53.3
Q ss_pred CCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeE
Q 040111 49 PDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVG 106 (133)
Q Consensus 49 ~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~ 106 (133)
++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++...+
T Consensus 43 L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~ 100 (115)
T 1we7_A 43 LNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGA 100 (115)
T ss_dssp CSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSC
T ss_pred cCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCC
Confidence 3578899999999999999999999999999999999999999999999999984433
No 71
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.46 E-value=3.8e-14 Score=95.22 Aligned_cols=66 Identities=17% Similarity=0.100 Sum_probs=57.9
Q ss_pred ccccCCCCC---CCceeecc--------c-cCcHHHHHHHhhhhc--CCCCCc-eEEEeCCcccCccccccccccEEeEE
Q 040111 43 ADFCKNPDP---QNITLEVE--------S-SDTIDNVKAKIQDKK--RIPPPA-EADLLKFPFFFFEEVLSFFWFVVVGV 107 (133)
Q Consensus 43 ~i~Vk~~~g---~~~~l~V~--------~-~~tV~~LK~~I~~~~--gIp~~~-q~L~~~gk~L~d~~tL~dy~~~~~~~ 107 (133)
.|+||+.++ +.+.++++ + ++||.+||++|++++ |+|+++ |+|+|+|+.|+|+.+|++|++.....
T Consensus 14 ~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~~ 93 (107)
T 1x1m_A 14 HLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGST 93 (107)
T ss_dssp CEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTCE
T ss_pred EEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCCE
Confidence 388898888 78888844 4 499999999999999 999999 99999999999999999999865554
Q ss_pred E
Q 040111 108 I 108 (133)
Q Consensus 108 ~ 108 (133)
+
T Consensus 94 i 94 (107)
T 1x1m_A 94 V 94 (107)
T ss_dssp E
T ss_pred E
Confidence 3
No 72
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.46 E-value=4.1e-14 Score=92.28 Aligned_cols=65 Identities=12% Similarity=0.062 Sum_probs=57.1
Q ss_pred cccCCCCCCCceeecccc-----CcHHHHHHHhhhhcCCCCCceEEEeCCcccCc-cccccccccEEeEEEE
Q 040111 44 DFCKNPDPQNITLEVESS-----DTIDNVKAKIQDKKRIPPPAEADLLKFPFFFF-EEVLSFFWFVVVGVIF 109 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~-----~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d-~~tL~dy~~~~~~~~~ 109 (133)
|+|+. .++.+.++++++ +||.+||++|++.+|+|+++|+|+|+|+.|+| +.+|++|++.....|+
T Consensus 10 v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~ 80 (92)
T 1wxv_A 10 VTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVM 80 (92)
T ss_dssp EEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEE
T ss_pred EEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEE
Confidence 77887 477889999985 99999999999999999999999999999999 5689999997655443
No 73
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.46 E-value=2.9e-14 Score=99.82 Aligned_cols=65 Identities=40% Similarity=0.398 Sum_probs=59.9
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEE
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGV 107 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~ 107 (133)
.|+|++.+|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|++...+.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~ 66 (152)
T 3b08_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 66 (152)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCE
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCe
Confidence 37889999999999999999999999999999999999999999999999999999999854443
No 74
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.45 E-value=5.9e-15 Score=108.49 Aligned_cols=73 Identities=8% Similarity=-0.040 Sum_probs=2.2
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEEeCceee
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIFCGCRVN 115 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~~~~~~~ 115 (133)
+|+|++++|++++++|++++||.+||++|++.+|||+++|+|+|+|++|+|+.+|++-....+.+.+.||.++
T Consensus 2 qI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs~~STLhLvlRLrGG~~k 74 (189)
T 2xzm_9 2 QVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVTDDVTYYLSLKLLGGKKK 74 (189)
T ss_dssp ----------------------------------------------------------------------CCC
T ss_pred EEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCcccCCCEEEEEEecCCCccc
Confidence 4899999999999999999999999999999999999999999999999999999943344555677898875
No 75
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.45 E-value=2.8e-14 Score=94.29 Aligned_cols=65 Identities=8% Similarity=-0.081 Sum_probs=54.1
Q ss_pred cccCCCCCC--CceeeccccCcHHHHHHHhhhhcCCCCCceEEEeC--Cc---cc-CccccccccccEEeEEE
Q 040111 44 DFCKNPDPQ--NITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLK--FP---FF-FFEEVLSFFWFVVVGVI 108 (133)
Q Consensus 44 i~Vk~~~g~--~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~--gk---~L-~d~~tL~dy~~~~~~~~ 108 (133)
++|+..+++ .+.+++++++||++||++|++++||||++|||+|+ |+ .| +|+++|++|++...+.+
T Consensus 18 l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gsti 90 (95)
T 2kjr_A 18 VNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRL 90 (95)
T ss_dssp EEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEE
T ss_pred EEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEE
Confidence 556655543 68899999999999999999999999999999997 45 45 88999999998755443
No 76
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.44 E-value=1.6e-14 Score=95.17 Aligned_cols=63 Identities=16% Similarity=0.036 Sum_probs=55.5
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVI 108 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~ 108 (133)
|+|+ ..++++.+++++++||.+||++|++++|+|+++|+|+|.|+.| |+.+|++|+|.....|
T Consensus 20 i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i 82 (95)
T 1v86_A 20 LKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKI 82 (95)
T ss_dssp EEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEE
T ss_pred EEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCCCCCEE
Confidence 6676 3578899999999999999999999999999999999999999 5559999999765543
No 77
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.42 E-value=5.4e-14 Score=92.21 Aligned_cols=64 Identities=16% Similarity=0.037 Sum_probs=58.1
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCcc-ccccccccEEeEEEEe
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFE-EVLSFFWFVVVGVIFC 110 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~-~tL~dy~~~~~~~~~~ 110 (133)
|+|++.+|+.+.++|++++||.+||++|++++ +++|+|+|+|+.|+|+ .+|++|++.....|.+
T Consensus 10 i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l 74 (95)
T 1wia_A 10 VRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHC 74 (95)
T ss_dssp EEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEE
Confidence 78888889999999999999999999999988 9999999999999999 9999999976664443
No 78
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.42 E-value=9.7e-14 Score=90.09 Aligned_cols=61 Identities=15% Similarity=0.047 Sum_probs=52.4
Q ss_pred CCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEe-------CCcccCccccccccccEEeEEE
Q 040111 48 NPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLL-------KFPFFFFEEVLSFFWFVVVGVI 108 (133)
Q Consensus 48 ~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~-------~gk~L~d~~tL~dy~~~~~~~~ 108 (133)
....+...+.+++++||++||++|++++|+||++|||+| .|+.++|+++|++|+|...+.+
T Consensus 11 ~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~i 78 (86)
T 4b6w_A 11 ASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVI 78 (86)
T ss_dssp TCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEE
T ss_pred CCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEE
Confidence 334455678899999999999999999999999999996 5899999999999998654433
No 79
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.40 E-value=1.9e-13 Score=90.63 Aligned_cols=58 Identities=16% Similarity=-0.085 Sum_probs=50.3
Q ss_pred CCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCc---c----cCccccccccccEEeEEE
Q 040111 51 PQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFP---F----FFFEEVLSFFWFVVVGVI 108 (133)
Q Consensus 51 g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk---~----L~d~~tL~dy~~~~~~~~ 108 (133)
+..+.+++++++||++||++|++++||||++|||+|.|+ . ++|+++|++|++...+.|
T Consensus 26 ~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~I 90 (97)
T 2kj6_A 26 SFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRL 90 (97)
T ss_dssp CCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEE
T ss_pred ceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEE
Confidence 457889999999999999999999999999999999883 3 488999999998755433
No 80
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=3.3e-13 Score=92.00 Aligned_cols=77 Identities=14% Similarity=-0.005 Sum_probs=64.3
Q ss_pred cccC-CCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCcccccccccc----EEeEEEEeCceeeeee
Q 040111 44 DFCK-NPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWF----VVVGVIFCGCRVNFWN 118 (133)
Q Consensus 44 i~Vk-~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~----~~~~~~~~~~~~~~~~ 118 (133)
+.|+ .+.++.+.++++++.||++||+.+++..++|+++|+|+|+||.|+|+.||++|++ +.+-+++.---.+|=-
T Consensus 18 vkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~p~~~p~ 97 (118)
T 2daf_A 18 VKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTNPDLYPV 97 (118)
T ss_dssp EEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESCTTTSCC
T ss_pred EEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCCCccCcc
Confidence 5555 6678889999999999999999999999999999999999999999999999998 5555665544444443
Q ss_pred cc
Q 040111 119 AS 120 (133)
Q Consensus 119 ~~ 120 (133)
|.
T Consensus 98 ~~ 99 (118)
T 2daf_A 98 RR 99 (118)
T ss_dssp CC
T ss_pred ee
Confidence 33
No 81
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.36 E-value=3.4e-13 Score=105.68 Aligned_cols=66 Identities=39% Similarity=0.406 Sum_probs=61.5
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVIF 109 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~~ 109 (133)
|+||+++|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|...+.+.
T Consensus 236 I~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~ 301 (307)
T 3ai5_A 236 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 301 (307)
T ss_dssp EEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEE
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEE
Confidence 899999999999999999999999999999999999999999999999999999999987655443
No 82
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.35 E-value=2.1e-14 Score=97.61 Aligned_cols=66 Identities=56% Similarity=0.753 Sum_probs=57.7
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc-----cccC---CCCCCCceeeccccCcHHH
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA-----DFCK---NPDPQNITLEVESSDTIDN 66 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~-----i~Vk---~~~g~~~~l~V~~~~tV~~ 66 (133)
|++++|||+++|+|+|+|++|+|+.+|++|||. +++|+|..+. ++++ +..|+++++++++++||.+
T Consensus 39 I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~~~~~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 39 IQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGSMGGAADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp HHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSCCCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred HHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCceeeccccccccCceEEEEeccccccCC
Confidence 356789999999999999999999999999999 9999999886 6777 3467888899999888864
No 83
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.34 E-value=2.2e-13 Score=109.21 Aligned_cols=66 Identities=12% Similarity=0.141 Sum_probs=60.5
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhh---hcCCCCCceEEEeCCcccCccccccccccEEeEEE
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQD---KKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVI 108 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~---~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~ 108 (133)
.|+||+.+|+++.++|++++||.+||.+|++ ++|||+++|||+|+|+.|+|+++|++|+|...+.|
T Consensus 9 ~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstI 77 (368)
T 1oqy_A 9 TITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFV 77 (368)
T ss_dssp CEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCE
T ss_pred EEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEE
Confidence 3899999999999999999999999999999 67899999999999999999999999998655533
No 84
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.33 E-value=4.8e-13 Score=87.96 Aligned_cols=65 Identities=17% Similarity=-0.057 Sum_probs=53.0
Q ss_pred cccCCCCC-CCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCC---cc----cCccccccccccEEeEEE
Q 040111 44 DFCKNPDP-QNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKF---PF----FFFEEVLSFFWFVVVGVI 108 (133)
Q Consensus 44 i~Vk~~~g-~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~g---k~----L~d~~tL~dy~~~~~~~~ 108 (133)
++|+.... ..+.+++++++||++||++|++++|+||++|||+|+| +. ++|+++|++|++...+.+
T Consensus 10 l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l 82 (95)
T 1v6e_A 10 VFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRI 82 (95)
T ss_dssp EEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEE
T ss_pred EEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEE
Confidence 44444333 2678899999999999999999999999999999986 43 589999999998755543
No 85
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.29 E-value=8e-13 Score=88.79 Aligned_cols=67 Identities=15% Similarity=0.065 Sum_probs=58.1
Q ss_pred ccccCCCCCCCceeecc-ccCcHHHHHHHhhhhcCCCCCceEEEeCCc-----------c----cCccccccccccEEeE
Q 040111 43 ADFCKNPDPQNITLEVE-SSDTIDNVKAKIQDKKRIPPPAEADLLKFP-----------F----FFFEEVLSFFWFVVVG 106 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~-~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk-----------~----L~d~~tL~dy~~~~~~ 106 (133)
.|+||+.+|+. .++|+ +++||.+||++|++++|+|+++|+|++.|+ . ++|+.+|++|++....
T Consensus 9 ~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G~ 87 (107)
T 1wf9_A 9 MLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGS 87 (107)
T ss_dssp EEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTC
T ss_pred EEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCCC
Confidence 38899999876 78999 999999999999999999999999999888 4 5789999999987554
Q ss_pred EEEe
Q 040111 107 VIFC 110 (133)
Q Consensus 107 ~~~~ 110 (133)
.++.
T Consensus 88 ~L~l 91 (107)
T 1wf9_A 88 MVYL 91 (107)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 4443
No 86
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.25 E-value=5.2e-12 Score=86.66 Aligned_cols=65 Identities=8% Similarity=-0.204 Sum_probs=52.9
Q ss_pred cccCCCCCC-CceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCC---c---c-cCccccccccccEEeEEE
Q 040111 44 DFCKNPDPQ-NITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKF---P---F-FFFEEVLSFFWFVVVGVI 108 (133)
Q Consensus 44 i~Vk~~~g~-~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~g---k---~-L~d~~tL~dy~~~~~~~~ 108 (133)
++|+...+. .+.+++++++||++||++|++.+||||++|||+|.| + . ++|+++|++|++...+.|
T Consensus 9 l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~i 81 (122)
T 1t0y_A 9 LEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRI 81 (122)
T ss_dssp EEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEE
T ss_pred EEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEE
Confidence 445444333 678899999999999999999999999999999987 4 3 478999999999665544
No 87
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.24 E-value=1.3e-12 Score=87.05 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=36.5
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHL 39 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L 39 (133)
|++++|+|+++|+|||+||+|+|+.||++|+|. +++|++
T Consensus 49 I~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~v 88 (100)
T 1wju_A 49 IAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMV 88 (100)
T ss_dssp HHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEE
T ss_pred HHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEE
Confidence 567899999999999999999999999999999 999954
No 88
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.24 E-value=1.5e-12 Score=85.55 Aligned_cols=40 Identities=25% Similarity=0.379 Sum_probs=37.7
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-ccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLG 40 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~ 40 (133)
|++++|+|+++|||+|+|++|+|+.||++|+|+ +++|+|.
T Consensus 51 I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 51 LSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp HHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred HHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 467899999999999999999999999999999 9999985
No 89
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.23 E-value=2.3e-12 Score=83.74 Aligned_cols=42 Identities=21% Similarity=0.338 Sum_probs=39.2
Q ss_pred CcccCCCCCCeEEEeCCEECCCCCCcccccc-c-cccccccccc
Q 040111 2 EDKEGIPPGQQRSIFAGKQLEDGRTLADYKI-Q-ESTLHLGWRA 43 (133)
Q Consensus 2 ~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI-~-~stl~L~~~~ 43 (133)
++++|+|+++|||+|+|++|+|+.+|++|+| . +++|+|.+++
T Consensus 35 ~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 35 SEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp HTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred HHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 6778999999999999999999999999999 7 9999998775
No 90
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.22 E-value=2.6e-12 Score=82.92 Aligned_cols=67 Identities=13% Similarity=0.187 Sum_probs=56.9
Q ss_pred cccCCCCCCCceee-ccccCcHHHHHHHhhhhcCCCCCceEEEeCC--cccC---ccccccccccEEeEEEEeC
Q 040111 44 DFCKNPDPQNITLE-VESSDTIDNVKAKIQDKKRIPPPAEADLLKF--PFFF---FEEVLSFFWFVVVGVIFCG 111 (133)
Q Consensus 44 i~Vk~~~g~~~~l~-V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~g--k~L~---d~~tL~dy~~~~~~~~~~~ 111 (133)
|.||+.+|+.. ++ +++++||.+||++|++++|+|+++|+|+|++ ++|. |+.+|++|++...+.+++.
T Consensus 3 i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~ 75 (86)
T 2kzr_A 3 VRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVE 75 (86)
T ss_dssp EEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECC
T ss_pred EEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEE
Confidence 67899999654 66 9999999999999999999999999999874 7874 6789999999766555544
No 91
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.22 E-value=3.8e-12 Score=100.26 Aligned_cols=70 Identities=14% Similarity=0.108 Sum_probs=60.5
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEE---eCCcccCccccccccccEEeE-EEEeCcee
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADL---LKFPFFFFEEVLSFFWFVVVG-VIFCGCRV 114 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~---~~gk~L~d~~tL~dy~~~~~~-~~~~~~~~ 114 (133)
+.|+. +|+.+.+++++++||++||++|++++||||++|+|+ |+|+.|+|+.+|++|+|...+ +.+.|...
T Consensus 8 i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~ 81 (320)
T 3shq_A 8 VIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTE 81 (320)
T ss_dssp EEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC
T ss_pred EEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccch
Confidence 55664 688899999999999999999999999999999999 899999999999999997665 55667654
No 92
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.21 E-value=2.5e-12 Score=81.15 Aligned_cols=43 Identities=30% Similarity=0.458 Sum_probs=39.5
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|+|+++|+|+|+|++|+|+.+|++|||. +++|+|+++.
T Consensus 34 i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl 77 (79)
T 3phx_B 34 VSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL 77 (79)
T ss_dssp HHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred HHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 356789999999999999999999999999999 9999988764
No 93
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.16 E-value=7.4e-12 Score=78.70 Aligned_cols=43 Identities=42% Similarity=0.696 Sum_probs=39.5
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|+|+++|+|+|+|++|+|+.+|++|||. +++|||.+++
T Consensus 34 i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 34 IQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp HHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred HHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 356789999999999999999999999999999 9999988764
No 94
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.15 E-value=3.9e-12 Score=84.71 Aligned_cols=41 Identities=22% Similarity=0.185 Sum_probs=38.2
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGW 41 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~ 41 (133)
|++++|||+++|||+|+|++|+|+.||++|||. +++|+|..
T Consensus 58 Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 58 IAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp HHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred HHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 467899999999999999999999999999999 99999864
No 95
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.15 E-value=4.7e-12 Score=81.53 Aligned_cols=43 Identities=28% Similarity=0.373 Sum_probs=39.4
Q ss_pred CCcccCCCCCCeEEEeCCEE-CCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQ-LEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~-L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|+|+++|+|+|+|++ |+|+.+|++|||. +++|+|++++
T Consensus 40 I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 40 IERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp HHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred HHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 45678999999999999999 9999999999999 9999988763
No 96
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.14 E-value=1.1e-11 Score=82.27 Aligned_cols=42 Identities=21% Similarity=0.338 Sum_probs=39.0
Q ss_pred CcccCCCCCCeEEEeCCEECCCCCCcccccc-c-cccccccccc
Q 040111 2 EDKEGIPPGQQRSIFAGKQLEDGRTLADYKI-Q-ESTLHLGWRA 43 (133)
Q Consensus 2 ~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI-~-~stl~L~~~~ 43 (133)
++++|+|+++|||+|+|++|+|+.+|++|+| . +++|+|++++
T Consensus 53 ~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 53 SEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp HTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred HHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 5678999999999999999999999999999 9 9999998764
No 97
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.13 E-value=7.3e-12 Score=78.98 Aligned_cols=43 Identities=19% Similarity=0.416 Sum_probs=39.1
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|+|+++|+|+|+|++|+|+.||++|+|. +++|++.++.
T Consensus 33 i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~ 76 (79)
T 2uyz_B 33 YCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 76 (79)
T ss_dssp HHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECC
T ss_pred HHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEec
Confidence 356789999999999999999999999999999 9999987653
No 98
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.12 E-value=1.1e-11 Score=80.09 Aligned_cols=43 Identities=58% Similarity=0.879 Sum_probs=38.9
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|+|+++|+|+|+|++|+|+.+|++|||. +++|+|+++.
T Consensus 30 I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl 73 (88)
T 4fbj_B 30 VEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLAL 73 (88)
T ss_dssp HHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBC
T ss_pred HHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEEC
Confidence 356789999999999999999999999999999 9999976654
No 99
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.12 E-value=1.2e-11 Score=84.59 Aligned_cols=61 Identities=26% Similarity=0.388 Sum_probs=47.0
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc--------cccccccccccccCCCCCCCceeeccccCcHHHH
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ--------ESTLHLGWRADFCKNPDPQNITLEVESSDTIDNV 67 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~--------~stl~L~~~~i~Vk~~~g~~~~l~V~~~~tV~~L 67 (133)
|+.++|||+++|||+|+|++|+|+.||++|||. +++|||.++ .+|..-.+++.+-.+--+|
T Consensus 31 I~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr------~~g~fe~l~i~~~s~pp~~ 99 (118)
T 2fnj_B 31 VEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR------ADDTFEALRIEPFSSPPEL 99 (118)
T ss_dssp HHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB------SSSCBCCCCBCCCCCCCC-
T ss_pred HHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec------CCCceeeeEEecCCCCCCc
Confidence 467899999999999999999999999999998 578996554 4555555666555443333
No 100
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.11 E-value=1.4e-11 Score=79.95 Aligned_cols=43 Identities=81% Similarity=1.161 Sum_probs=39.5
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|+|+++|+|+|+|+.|+|+.+|++|||. +++|+|+++.
T Consensus 47 I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rl 90 (91)
T 3v6c_B 47 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 90 (91)
T ss_dssp HHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCC
T ss_pred HHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEec
Confidence 356789999999999999999999999999999 9999988763
No 101
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.10 E-value=4.1e-11 Score=82.80 Aligned_cols=42 Identities=36% Similarity=0.531 Sum_probs=37.5
Q ss_pred CcccCCCC--CCeEEEeCCEECCCCCCccccccc-c------ccccccccc
Q 040111 2 EDKEGIPP--GQQRSIFAGKQLEDGRTLADYKIQ-E------STLHLGWRA 43 (133)
Q Consensus 2 ~~~~gip~--~~Q~Li~~gk~L~D~~tL~~ygI~-~------stl~L~~~~ 43 (133)
++++|||+ ++|||||+||+|+|+.||++|+|. + +++||+++.
T Consensus 53 ~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~tmhlVlrl 103 (126)
T 1se9_A 53 REKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQA 103 (126)
T ss_dssp TTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEEEEEEECC
T ss_pred cccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEEEEEEecc
Confidence 46789997 799999999999999999999999 8 678977665
No 102
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.10 E-value=5.1e-11 Score=78.39 Aligned_cols=59 Identities=2% Similarity=-0.079 Sum_probs=57.2
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCcccccccccc
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWF 102 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~ 102 (133)
|+|++.+|+.+.++|.+++++..|++.++++.|+|+++|+|+|.|+.|.++.|+++|++
T Consensus 10 ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~m 68 (94)
T 2io1_B 10 LKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEM 68 (94)
T ss_dssp EEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTC
T ss_pred EEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCC
Confidence 78899999999999999999999999999999999999999999999999999999996
No 103
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.09 E-value=2.4e-11 Score=79.87 Aligned_cols=52 Identities=69% Similarity=0.948 Sum_probs=39.1
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc-----cccCCCCCC
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA-----DFCKNPDPQ 52 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~-----i~Vk~~~g~ 52 (133)
|++.+|+|+++|+|+|+|+.|+|+.+|++|||. +++|+|..+. ++.++.+|+
T Consensus 30 I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~~~~v~~~ 87 (98)
T 1yx5_B 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPNSSSVDKL 87 (98)
T ss_dssp HHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC-----------
T ss_pred HHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCccccCCCc
Confidence 356789999999999999999999999999999 9999977664 455554443
No 104
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=3.3e-11 Score=75.92 Aligned_cols=43 Identities=42% Similarity=0.696 Sum_probs=39.3
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++.+|+|+++|+|+|+|+.|+|+.+|++|||. +++|++.+++
T Consensus 37 i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 37 VSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp HHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred HHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 356789999999999999999999999999999 9999988764
No 105
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.09 E-value=2.2e-11 Score=81.55 Aligned_cols=43 Identities=16% Similarity=0.304 Sum_probs=39.9
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|||+++|+|+|+|++|+|+.+|++|||. +++|+|+++.
T Consensus 31 I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~ 74 (106)
T 3m62_B 31 LAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQ 74 (106)
T ss_dssp HHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC
T ss_pred HHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcC
Confidence 456789999999999999999999999999999 9999988775
No 106
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.09 E-value=3.4e-11 Score=82.27 Aligned_cols=43 Identities=33% Similarity=0.504 Sum_probs=38.5
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc--------cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ--------ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~--------~stl~L~~~~ 43 (133)
|++++|||+++|||||+|++|+|+.||++|||. +++|||.++.
T Consensus 31 I~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr~ 81 (118)
T 4ajy_B 31 VEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRA 81 (118)
T ss_dssp HHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEECC
T ss_pred HHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEec
Confidence 467899999999999999999999999999985 4689987774
No 107
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.08 E-value=1.5e-11 Score=81.01 Aligned_cols=43 Identities=19% Similarity=0.416 Sum_probs=39.3
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|||+++|||+|+|++|+|+.||++|+|. +++|+|++++
T Consensus 51 i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~ 94 (97)
T 1wyw_B 51 YCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 94 (97)
T ss_dssp HHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESS
T ss_pred HHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEec
Confidence 356789999999999999999999999999999 9999987653
No 108
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.08 E-value=2.3e-11 Score=78.22 Aligned_cols=42 Identities=33% Similarity=0.609 Sum_probs=38.2
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCcccccccccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQESTLHLGWR 42 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~~stl~L~~~ 42 (133)
|++++|+|+++|+|+|+|++|+|+.+|++|||.+++|||++|
T Consensus 47 i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~g~~i~lv~R 88 (88)
T 4eew_A 47 IAASVSIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVER 88 (88)
T ss_dssp HHHHHTCCGGGEEEEETTEECCTTSBGGGGTCTTEEEEEEEC
T ss_pred HHHHhCCCHHHEEEEECCEECCCCCcHHHcCCCCcEEEEEEC
Confidence 356789999999999999999999999999998889998764
No 109
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.08 E-value=1.8e-11 Score=78.39 Aligned_cols=43 Identities=60% Similarity=0.920 Sum_probs=39.0
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|+|+++|+|+|+|++|+|+.+|++|+|. +++|+|.++.
T Consensus 42 i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl 85 (88)
T 3dbh_I 42 VEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRL 85 (88)
T ss_dssp HHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCC
T ss_pred HHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 356789999999999999999999999999999 9999987653
No 110
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=3.1e-11 Score=82.26 Aligned_cols=42 Identities=19% Similarity=0.318 Sum_probs=39.4
Q ss_pred CcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 2 EDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 2 ~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
....++|+++|+|+|+||+|+|+.||.+|||+ +.++||+++.
T Consensus 47 s~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s 89 (118)
T 2daf_A 47 SHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFS 89 (118)
T ss_dssp HHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEE
T ss_pred HhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEec
Confidence 34679999999999999999999999999999 9999999887
No 111
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.07 E-value=2.3e-11 Score=79.84 Aligned_cols=43 Identities=26% Similarity=0.370 Sum_probs=38.7
Q ss_pred CCcccCCCCCCeEEEeCCEECCCC-CCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDG-RTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~-~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|||+++|+|+|+|++|+|+ .+|++|||. +++|+|+++.
T Consensus 44 I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~ 88 (94)
T 2kan_A 44 IHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKS 88 (94)
T ss_dssp HHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECC
T ss_pred HHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeC
Confidence 456789999999999999999999 999999999 9999976553
No 112
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=98.64 E-value=1.6e-11 Score=76.73 Aligned_cols=43 Identities=33% Similarity=0.621 Sum_probs=39.6
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++.+|+|+++|+|+|+|++|+|+.+|++|||. +++|||.++.
T Consensus 30 i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rl 73 (76)
T 3b1l_X 30 VAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRP 73 (76)
Confidence 567899999999999999999999999999999 9999987753
No 113
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.06 E-value=3.7e-11 Score=75.00 Aligned_cols=42 Identities=40% Similarity=0.664 Sum_probs=38.3
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-ccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWR 42 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~ 42 (133)
|++.+|+|+++|+|+|+|+.|+|+.+|++|||. +++|++..+
T Consensus 33 i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 33 INKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp HHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred HHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 356789999999999999999999999999999 999998765
No 114
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.06 E-value=1.7e-10 Score=72.11 Aligned_cols=63 Identities=2% Similarity=-0.109 Sum_probs=58.6
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVG 106 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~ 106 (133)
+.|++.+|+.+.+.+.++++++.|+...+++.|+|+++++++|.|+.|.++.|.++|++-...
T Consensus 4 lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD 66 (72)
T 1wm3_A 4 LKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDED 66 (72)
T ss_dssp EEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTE
T ss_pred EEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCC
Confidence 678888999999999999999999999999999999999999999999999999999975433
No 115
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.06 E-value=3.5e-11 Score=79.22 Aligned_cols=43 Identities=81% Similarity=1.161 Sum_probs=39.2
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|+|+++|+|+|+|++|+|+.+|++|+|. +++|+|+++.
T Consensus 52 I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl 95 (98)
T 4hcn_B 52 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 95 (98)
T ss_dssp HHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBC
T ss_pred HHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 456789999999999999999999999999999 9999987663
No 116
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.05 E-value=3.4e-11 Score=76.54 Aligned_cols=43 Identities=70% Similarity=1.023 Sum_probs=38.8
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++++|+++|+|+|+|++|+|+.+|++|+|. +++|++.++.
T Consensus 33 i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl 76 (85)
T 3n3k_B 33 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKL 76 (85)
T ss_dssp HHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred HHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEec
Confidence 356789999999999999999999999999999 9999976653
No 117
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.05 E-value=3.3e-11 Score=78.54 Aligned_cols=41 Identities=34% Similarity=0.401 Sum_probs=37.0
Q ss_pred Cccc--CCCCCCeEEEeCCEECCCCCCcccc--ccc-ccccccccc
Q 040111 2 EDKE--GIPPGQQRSIFAGKQLEDGRTLADY--KIQ-ESTLHLGWR 42 (133)
Q Consensus 2 ~~~~--gip~~~Q~Li~~gk~L~D~~tL~~y--gI~-~stl~L~~~ 42 (133)
++++ ++|+++|||+|+|++|+|+.+|++| +|. +++|||+++
T Consensus 40 ~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~ 85 (93)
T 1wgd_A 40 SRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN 85 (93)
T ss_dssp HHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred HHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeC
Confidence 3455 9999999999999999999999999 999 999997654
No 118
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.05 E-value=3.8e-11 Score=74.47 Aligned_cols=42 Identities=60% Similarity=0.909 Sum_probs=38.4
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-ccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWR 42 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~ 42 (133)
|++++|+|+++|+|+|+|+.|+|+.+|++|||. +++|++.++
T Consensus 30 i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 30 VEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLA 72 (76)
T ss_dssp HHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred HHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 356789999999999999999999999999999 999998765
No 119
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.05 E-value=4.5e-11 Score=76.15 Aligned_cols=39 Identities=28% Similarity=0.483 Sum_probs=36.3
Q ss_pred cCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 5 EGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 5 ~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
+|+|+++|+|+|+|++|+|+.+|++|||. +++|+|+.+.
T Consensus 42 ~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 42 DAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp TTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred cCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 79999999999999999999999999999 9999987654
No 120
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.05 E-value=4e-11 Score=77.16 Aligned_cols=43 Identities=35% Similarity=0.491 Sum_probs=38.8
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|+|+++|+|+|+|++|+|+.+|++|+|. +++|||+++.
T Consensus 39 i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 82 (89)
T 1wy8_A 39 VWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRP 82 (89)
T ss_dssp HHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECC
T ss_pred HHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeC
Confidence 356789999999999999999999999999999 9999976553
No 121
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.04 E-value=5.1e-10 Score=73.19 Aligned_cols=59 Identities=2% Similarity=-0.079 Sum_probs=57.1
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCcccccccccc
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWF 102 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~ 102 (133)
|.|++.+|+.+.++|.+++++..|+...+++.|+|+++++++|.|+.|.++.|.++|++
T Consensus 8 ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~m 66 (91)
T 2io0_B 8 LKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEM 66 (91)
T ss_dssp EEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTC
T ss_pred EEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCC
Confidence 78888999999999999999999999999999999999999999999999999999997
No 122
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.04 E-value=2.5e-11 Score=78.62 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=37.6
Q ss_pred CCcccCCCCCCeEEEe-------CCEECCCCCCccccccc-ccccccccc
Q 040111 1 IEDKEGIPPGQQRSIF-------AGKQLEDGRTLADYKIQ-ESTLHLGWR 42 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~-------~gk~L~D~~tL~~ygI~-~stl~L~~~ 42 (133)
|++++|||+++|||+| .|++|+|+.+|++|||. |++|||+-+
T Consensus 34 i~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 34 VFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp HHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred HHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence 4678999999999996 58899999999999999 999998643
No 123
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.04 E-value=4.5e-11 Score=76.52 Aligned_cols=43 Identities=42% Similarity=0.557 Sum_probs=38.7
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|+|+++|+|+|+|++|+|+.+|++|+|. +++|+|.++.
T Consensus 37 i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (87)
T 1wh3_A 37 IEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKK 80 (87)
T ss_dssp HHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECS
T ss_pred HHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEec
Confidence 356789999999999999999999999999999 9999976553
No 124
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.04 E-value=4.7e-11 Score=77.07 Aligned_cols=43 Identities=35% Similarity=0.614 Sum_probs=38.7
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccccccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~~stl~L~~~~ 43 (133)
|++++|+|+++|+|+|+|++|+|+.+|++|||.+++|||+++.
T Consensus 35 i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i~g~~i~l~~~~ 77 (90)
T 4dwf_A 35 IAASVSIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERA 77 (90)
T ss_dssp HHHHHTCCGGGEEEEETTEECCTTSBGGGGTCTTEEEEEEECC
T ss_pred HHHHhCCCHHHEEEEECCeECCCCCCHHHcCCCCcEEEEEecC
Confidence 4567899999999999999999999999999988899977664
No 125
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.03 E-value=2.3e-11 Score=78.57 Aligned_cols=42 Identities=31% Similarity=0.478 Sum_probs=38.3
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-ccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWR 42 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~ 42 (133)
|++++|||+++|+|+|+|++|+|+.+|++|||. +++|+|..+
T Consensus 34 I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~ 76 (88)
T 2hj8_A 34 VSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR 76 (88)
T ss_dssp HHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC
T ss_pred HHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence 356789999999999999999999999999999 999997554
No 126
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.02 E-value=7.6e-11 Score=75.85 Aligned_cols=42 Identities=26% Similarity=0.332 Sum_probs=38.3
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-ccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWR 42 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~ 42 (133)
|++.+|+|+++|+|+|+|++|+|+.+|++|||. +++|+|+.+
T Consensus 41 I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 41 LQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp HHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred HHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 356789999999999999999999999999999 999998764
No 127
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.02 E-value=5.6e-11 Score=78.97 Aligned_cols=42 Identities=40% Similarity=0.664 Sum_probs=38.8
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-ccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWR 42 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~ 42 (133)
|++++|+|+++|+|+|+|++|+|+.+|++|||. +++|+|+.+
T Consensus 57 I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 57 INKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp HHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCC
T ss_pred HHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 356789999999999999999999999999999 999998765
No 128
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.02 E-value=3.3e-11 Score=78.78 Aligned_cols=43 Identities=35% Similarity=0.516 Sum_probs=39.1
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|+|+++|+|+|+|++|+|+.+|++|+|. +++|+|+++.
T Consensus 47 I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl 90 (93)
T 2l7r_A 47 VASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRM 90 (93)
T ss_dssp HHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCC
T ss_pred HHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 456789999999999999999999999999999 9999987653
No 129
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.02 E-value=1e-10 Score=76.58 Aligned_cols=39 Identities=31% Similarity=0.508 Sum_probs=36.5
Q ss_pred cCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 5 EGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 5 ~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
+|+|+++|+|+|+|++|+|+.+|++|||. +++|+|+++.
T Consensus 37 ~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~ 76 (95)
T 1uel_A 37 DAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 76 (95)
T ss_dssp TTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESS
T ss_pred CCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeC
Confidence 79999999999999999999999999999 9999976654
No 130
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.02 E-value=6.3e-11 Score=75.17 Aligned_cols=42 Identities=79% Similarity=1.079 Sum_probs=38.3
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-ccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWR 42 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~ 42 (133)
|++++++|+++|+|+|+|+.|+|+.+|++|+|. +++|+|.++
T Consensus 33 i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r 75 (85)
T 3mtn_B 33 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLR 75 (85)
T ss_dssp HHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECC
T ss_pred HHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEE
Confidence 356789999999999999999999999999999 999997654
No 131
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.01 E-value=7e-11 Score=77.03 Aligned_cols=43 Identities=81% Similarity=1.161 Sum_probs=38.8
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|+|+++|+|+|+|+.|+|+.+|++|||. +++|+|+++.
T Consensus 31 i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~ 74 (96)
T 3k9o_B 31 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 74 (96)
T ss_dssp HHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred HHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEc
Confidence 356789999999999999999999999999999 9999976554
No 132
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.01 E-value=8.1e-11 Score=72.98 Aligned_cols=42 Identities=83% Similarity=1.199 Sum_probs=38.3
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-ccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWR 42 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~ 42 (133)
|++..|+|+++|+|+|+|+.|+|+.+|++|||. +++|++.++
T Consensus 30 i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLR 72 (76)
T ss_dssp HHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred HHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence 356789999999999999999999999999999 999997765
No 133
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.01 E-value=7e-11 Score=76.35 Aligned_cols=42 Identities=83% Similarity=1.199 Sum_probs=37.7
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-ccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWR 42 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~ 42 (133)
|++++|+|+++|+|+|+|++|+|+.+|++|||. +++|+|.++
T Consensus 39 I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r 81 (88)
T 1sif_A 39 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 81 (88)
T ss_dssp HHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-
T ss_pred HHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 356789999999999999999999999999999 999997654
No 134
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.99 E-value=5.4e-11 Score=77.80 Aligned_cols=43 Identities=30% Similarity=0.298 Sum_probs=38.8
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|+|+++|+|+|+|++|+|+.+|++|+|. +++|||+++.
T Consensus 46 I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~ 89 (96)
T 1wx8_A 46 ISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRS 89 (96)
T ss_dssp HHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCC
T ss_pred HHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeC
Confidence 356789999999999999999999999999999 9999976553
No 135
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.99 E-value=1.4e-10 Score=79.11 Aligned_cols=40 Identities=30% Similarity=0.434 Sum_probs=35.2
Q ss_pred ccCC--CCCCeEEEeCCEECCCCCCccccccc-c--ccccccccc
Q 040111 4 KEGI--PPGQQRSIFAGKQLEDGRTLADYKIQ-E--STLHLGWRA 43 (133)
Q Consensus 4 ~~gi--p~~~Q~Li~~gk~L~D~~tL~~ygI~-~--stl~L~~~~ 43 (133)
++++ |+++|||||+||+|+|+.||++|+|. + +++||+++.
T Consensus 55 ke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLvlr~ 99 (116)
T 1wgh_A 55 EEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLVARE 99 (116)
T ss_dssp SCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEEECS
T ss_pred ccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEEccC
Confidence 5675 69999999999999999999999997 5 688988776
No 136
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.99 E-value=7.9e-11 Score=78.69 Aligned_cols=43 Identities=28% Similarity=0.526 Sum_probs=39.1
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|||+++|+|+|+|++|+|+.+|++|||. +++|||+++.
T Consensus 53 I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~ 96 (106)
T 1ttn_A 53 LHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQ 96 (106)
T ss_dssp HHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCC
T ss_pred HHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 356799999999999999999999999999999 9999987654
No 137
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=98.98 E-value=1.1e-10 Score=78.63 Aligned_cols=43 Identities=81% Similarity=1.161 Sum_probs=39.1
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|+|+++|+|+|+|++|+|+.+|++|+|. +++|||+++.
T Consensus 65 I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl 108 (111)
T 3vdz_A 65 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 108 (111)
T ss_dssp HHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECC
T ss_pred HHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 356789999999999999999999999999999 9999987663
No 138
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.97 E-value=1e-10 Score=76.96 Aligned_cols=43 Identities=23% Similarity=0.377 Sum_probs=39.2
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-ccccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRAD 44 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~i 44 (133)
|++++|||+++|+|+|.|++|+|+ +|++|||. +++|+|+.+.-
T Consensus 37 I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 37 LFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp HHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred HHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 467899999999999999999999 99999999 99999987663
No 139
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=98.97 E-value=1.1e-10 Score=78.26 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=38.3
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCcccccc-c-ccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKI-Q-ESTLHLGWR 42 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI-~-~stl~L~~~ 42 (133)
|++++|||+++|||+|+|+.++|+.||.+||| . |+++||.+.
T Consensus 56 I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 56 VFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp HHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred HHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 45789999999999999999999999999999 6 999998764
No 140
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=98.97 E-value=7.8e-11 Score=78.08 Aligned_cols=43 Identities=35% Similarity=0.428 Sum_probs=38.9
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|+|+++|+|+|+|++|+|+.+|++|||. +++|+|+++.
T Consensus 51 I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~ 94 (100)
T 1yqb_A 51 ISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKR 94 (100)
T ss_dssp HHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECC
T ss_pred HHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcC
Confidence 356789999999999999999999999999999 9999977653
No 141
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.96 E-value=1.2e-10 Score=78.38 Aligned_cols=42 Identities=29% Similarity=0.371 Sum_probs=38.2
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-ccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWR 42 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~ 42 (133)
|++.+|||+++|+|+|+|++|+|+.+|++|||. +++|+|+++
T Consensus 61 I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r 103 (111)
T 1we6_A 61 IAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLR 103 (111)
T ss_dssp HHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECS
T ss_pred HHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence 456789999999999999999999999999999 999996554
No 142
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=98.96 E-value=1.2e-10 Score=78.83 Aligned_cols=42 Identities=29% Similarity=0.644 Sum_probs=38.3
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-ccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWR 42 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~ 42 (133)
|++.+|||+++|+|+|+|++|+|+.+|++|+|. +++|||+++
T Consensus 65 I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~r 107 (115)
T 1we7_A 65 IHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALK 107 (115)
T ss_dssp HHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEEEC
T ss_pred HHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEE
Confidence 356789999999999999999999999999999 999997654
No 143
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=98.96 E-value=2e-10 Score=82.87 Aligned_cols=43 Identities=81% Similarity=1.161 Sum_probs=40.4
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|+|+++|+|+|+|++|+|+.+|++|||. +++|||+++.
T Consensus 30 I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl 73 (169)
T 3l0w_B 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (169)
T ss_dssp HHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred HHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEe
Confidence 456789999999999999999999999999999 9999999886
No 144
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=98.95 E-value=1.5e-10 Score=76.78 Aligned_cols=43 Identities=35% Similarity=0.363 Sum_probs=38.8
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++.+|+|+++|+|+|+|++|+|+.+|++|||. +++|+|..+.
T Consensus 54 I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~ 97 (101)
T 2klc_A 54 ISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKT 97 (101)
T ss_dssp HHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECC
T ss_pred HHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcC
Confidence 356789999999999999999999999999999 9999987653
No 145
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.94 E-value=1.7e-10 Score=76.89 Aligned_cols=43 Identities=35% Similarity=0.428 Sum_probs=39.0
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|||+++|+|+|+|+.|+|+.+|++|+|. +++|||+++.
T Consensus 46 I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~ 89 (106)
T 1wx7_A 46 ISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKR 89 (106)
T ss_dssp HHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECC
T ss_pred HHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcC
Confidence 356789999999999999999999999999999 9999977654
No 146
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=98.93 E-value=9.4e-11 Score=80.83 Aligned_cols=47 Identities=72% Similarity=1.000 Sum_probs=0.5
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccccccCCCCCC
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRADFCKNPDPQ 52 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~i~Vk~~~g~ 52 (133)
|++.+|||+++|+|+|+|++|+|+.||++|||. +++|+|+ ++...|.
T Consensus 30 I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~-----~rl~GG~ 77 (128)
T 3u5e_m 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV-----LRLRGGI 77 (128)
T ss_dssp ----------------------------------------------------C
T ss_pred HHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEE-----EEcCCCC
Confidence 567899999999999999999999999999999 9999954 4555554
No 147
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.93 E-value=6.4e-10 Score=70.74 Aligned_cols=63 Identities=2% Similarity=-0.065 Sum_probs=58.2
Q ss_pred cccCCCCCC-CceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeE
Q 040111 44 DFCKNPDPQ-NITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVG 106 (133)
Q Consensus 44 i~Vk~~~g~-~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~ 106 (133)
|.|++.+|+ .+.+.|.+++++..|+...+++.|+++++++++|.|+.|.++.|.++|++-..-
T Consensus 10 ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD 73 (79)
T 3a4r_A 10 LRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGD 73 (79)
T ss_dssp EEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTC
T ss_pred EEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCC
Confidence 788899996 789999999999999999999999999999999999999999999999975433
No 148
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.93 E-value=2.2e-10 Score=76.62 Aligned_cols=42 Identities=33% Similarity=0.517 Sum_probs=38.1
Q ss_pred Cccc--CCCCCC-eEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 2 EDKE--GIPPGQ-QRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 2 ~~~~--gip~~~-Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
++++ |+|+++ |+|+|+|++|+|+.+|++|||. +++|||+.+.
T Consensus 55 ~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~~i~lv~~~ 100 (107)
T 1x1m_A 55 AGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTVHVLRKS 100 (107)
T ss_dssp HHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTCEEEEEESS
T ss_pred HHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCCEEEEEeCC
Confidence 4556 999999 9999999999999999999999 9999987654
No 149
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.93 E-value=2.4e-10 Score=78.68 Aligned_cols=43 Identities=35% Similarity=0.346 Sum_probs=38.5
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|||+++|+|+|+|++|+|+.+|.+|||. +++|+|+.+.
T Consensus 61 I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~ 104 (125)
T 1j8c_A 61 ISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKR 104 (125)
T ss_dssp HHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-
T ss_pred HHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEecc
Confidence 356789999999999999999999999999999 9999976654
No 150
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=98.92 E-value=2e-10 Score=84.40 Aligned_cols=43 Identities=81% Similarity=1.161 Sum_probs=39.3
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|||+++|+|+|+|++|+|+.+|++|+|. +++|||+++.
T Consensus 135 I~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lvlrl 178 (189)
T 3q3f_A 135 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 178 (189)
T ss_dssp HHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCC
T ss_pred HHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEc
Confidence 456789999999999999999999999999999 9999977664
No 151
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=98.92 E-value=2.2e-10 Score=74.38 Aligned_cols=43 Identities=19% Similarity=0.357 Sum_probs=39.3
Q ss_pred CCcccCCCCCCeEEE---eCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSI---FAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li---~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|||+++|+|+ |.|++|+|+.+|++|+|. +++|+|+...
T Consensus 37 I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 37 LKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp HHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred HHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 467899999999999 999999999999999999 9999987654
No 152
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=98.91 E-value=1.3e-10 Score=82.71 Aligned_cols=43 Identities=81% Similarity=1.161 Sum_probs=0.0
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++.+|||+++|+|+|+|++|+|+.+|++|||. +++|+|+++.
T Consensus 30 I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl 73 (152)
T 3u5c_f 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp --------------------------------------------
T ss_pred HHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeec
Confidence 577899999999999999999999999999999 9999988876
No 153
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.88 E-value=1.5e-09 Score=71.12 Aligned_cols=62 Identities=2% Similarity=-0.111 Sum_probs=58.0
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEe
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVV 105 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~ 105 (133)
|.|++.+|+.+.+.|.+++++..|+...+++.|+++++++|+|.|+.|.++.|+++|++-..
T Consensus 20 ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medg 81 (93)
T 2d07_B 20 LKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDE 81 (93)
T ss_dssp EEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTT
T ss_pred EEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCC
Confidence 78888899989999999999999999999999999999999999999999999999997433
No 154
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=98.88 E-value=5.7e-10 Score=75.03 Aligned_cols=43 Identities=81% Similarity=1.161 Sum_probs=38.9
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|+|+++|+|+|+|+.|+|+.+|++|||. +++|+|.++.
T Consensus 65 I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl 108 (111)
T 2ojr_A 65 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 108 (111)
T ss_dssp HHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECC
T ss_pred HHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 356789999999999999999999999999999 9999987653
No 155
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.88 E-value=3.4e-10 Score=73.42 Aligned_cols=43 Identities=30% Similarity=0.455 Sum_probs=37.6
Q ss_pred CCcccCCCCCCeEEEeCCEECCC-CCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLED-GRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D-~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|+|+++|+|+|.|++|+| +.+|++|||. +++|+|+.+.
T Consensus 41 i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~ 85 (92)
T 1wxv_A 41 VEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKK 85 (92)
T ss_dssp HHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCC
T ss_pred HHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecC
Confidence 35678999999999999999988 6689999999 9999986543
No 156
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.87 E-value=2.3e-10 Score=75.90 Aligned_cols=43 Identities=19% Similarity=0.363 Sum_probs=38.1
Q ss_pred CCcccCCCCCCeEEEeCCEECCCC-CCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDG-RTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~-~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|||+++|+|+|+|++|+|+ .+|++|||. +++|+|..+.
T Consensus 41 I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 41 CELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85 (102)
T ss_dssp HHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred HHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence 456789999999999999999987 699999999 9999976553
No 157
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=98.87 E-value=3.2e-10 Score=78.26 Aligned_cols=40 Identities=30% Similarity=0.404 Sum_probs=35.3
Q ss_pred ccCCC--CCCeEEEeCCEECCCCCCccccccc-cc--cccccccc
Q 040111 4 KEGIP--PGQQRSIFAGKQLEDGRTLADYKIQ-ES--TLHLGWRA 43 (133)
Q Consensus 4 ~~gip--~~~Q~Li~~gk~L~D~~tL~~ygI~-~s--tl~L~~~~ 43 (133)
++|+| +++|||||+||+|+|+.||++|+|. ++ ++||+++.
T Consensus 56 ke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv~r~ 100 (125)
T 2gow_A 56 EEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLVARE 100 (125)
T ss_dssp CCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEEECS
T ss_pred ccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEEecC
Confidence 67885 8999999999999999999999998 65 78877766
No 158
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.86 E-value=2e-09 Score=71.96 Aligned_cols=62 Identities=2% Similarity=-0.111 Sum_probs=58.2
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEe
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVV 105 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~ 105 (133)
|.|++.+|+.+.+.|.+++++..|+...+++.|+++++++|+|.|+.|.++.|+++|++-..
T Consensus 27 IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medg 88 (104)
T 1wz0_A 27 LKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDE 88 (104)
T ss_dssp EEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTT
T ss_pred EEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCC
Confidence 78888899999999999999999999999999999999999999999999999999997433
No 159
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=98.85 E-value=7.4e-10 Score=73.45 Aligned_cols=36 Identities=31% Similarity=0.414 Sum_probs=32.9
Q ss_pred cCCCC-CCeEEEeCCEECCCCCCcccc--ccc-ccccccc
Q 040111 5 EGIPP-GQQRSIFAGKQLEDGRTLADY--KIQ-ESTLHLG 40 (133)
Q Consensus 5 ~gip~-~~Q~Li~~gk~L~D~~tL~~y--gI~-~stl~L~ 40 (133)
+|+|+ ++|||||+||+|+|+.+|++| +|. +++|||+
T Consensus 60 ~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 60 PSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp TTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred cCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 56665 999999999999999999999 999 9999974
No 160
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.84 E-value=1.8e-09 Score=72.93 Aligned_cols=63 Identities=10% Similarity=-0.059 Sum_probs=58.7
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVG 106 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~ 106 (133)
|.|++.+|+.+.+.|.+++++..|+...+++.|+|+++++|+|.|+.|.++.|+++|++-..-
T Consensus 29 IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD 91 (110)
T 2k8h_A 29 VKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDD 91 (110)
T ss_dssp EEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEE
T ss_pred EEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCC
Confidence 788888999999999999999999999999999999999999999999999999999974333
No 161
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.84 E-value=1.7e-09 Score=71.02 Aligned_cols=60 Identities=15% Similarity=0.098 Sum_probs=50.0
Q ss_pred CCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCC-------ccc-CccccccccccEEeEEE
Q 040111 49 PDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKF-------PFF-FFEEVLSFFWFVVVGVI 108 (133)
Q Consensus 49 ~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~g-------k~L-~d~~tL~dy~~~~~~~~ 108 (133)
.+++.+...+++++||++||.+|+..+|+|+..|+|.|.+ ..| +|.++|++|++.....|
T Consensus 20 ~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I 87 (97)
T 1wjn_A 20 PERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCL 87 (97)
T ss_dssp SSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEE
Confidence 4677888999999999999999999999999999999873 224 56789999998644433
No 162
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.79 E-value=3.6e-09 Score=70.99 Aligned_cols=62 Identities=3% Similarity=-0.098 Sum_probs=57.8
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVG 106 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~ 106 (133)
|.|++ +|+.+.+.|.+++++..|+...+++.|+++++++++|.|+.|.++.|.++|++-..-
T Consensus 34 IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD 95 (106)
T 2eke_C 34 LKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDND 95 (106)
T ss_dssp EEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTE
T ss_pred EEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCC
Confidence 78888 899999999999999999999999999999999999999999999999999975433
No 163
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=98.79 E-value=8.5e-10 Score=72.60 Aligned_cols=40 Identities=18% Similarity=0.172 Sum_probs=35.2
Q ss_pred CCcccCCCCCCeEEEeC--CE---EC-CCCCCccccccc-ccccccc
Q 040111 1 IEDKEGIPPGQQRSIFA--GK---QL-EDGRTLADYKIQ-ESTLHLG 40 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~--gk---~L-~D~~tL~~ygI~-~stl~L~ 40 (133)
|++++|||+++|||+|. |+ +| +|+.+|++|||. +++|+|+
T Consensus 47 I~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 47 LEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp HHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred HHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 46789999999999998 55 55 899999999999 9999974
No 164
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=98.74 E-value=8e-10 Score=73.03 Aligned_cols=40 Identities=18% Similarity=0.123 Sum_probs=35.2
Q ss_pred CCcccCCCCCCeEEEeCC---EE----CCCCCCccccccc-ccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAG---KQ----LEDGRTLADYKIQ-ESTLHLG 40 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~g---k~----L~D~~tL~~ygI~-~stl~L~ 40 (133)
|++++|||+++|||+|.| +. ++|+.+|++|+|. +++|+|+
T Consensus 46 Ie~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlv 93 (97)
T 2kj6_A 46 LWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHII 93 (97)
T ss_dssp HHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEE
T ss_pred HHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEE
Confidence 467899999999999998 33 4899999999999 9999975
No 165
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=1.6e-09 Score=70.24 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=34.2
Q ss_pred Cc-ccCCCCCCeEEEeC--CEECCCCCCccccccc-cccccc
Q 040111 2 ED-KEGIPPGQQRSIFA--GKQLEDGRTLADYKIQ-ESTLHL 39 (133)
Q Consensus 2 ~~-~~gip~~~Q~Li~~--gk~L~D~~tL~~ygI~-~stl~L 39 (133)
++ +.|+|+++|||+|. |++|+|+.||++|||. +++|++
T Consensus 44 ~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 44 TKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp HHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred HHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 44 58999999999987 9999999999999999 999875
No 166
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.71 E-value=1.4e-09 Score=72.31 Aligned_cols=44 Identities=18% Similarity=0.157 Sum_probs=38.4
Q ss_pred CCcccCCCCCCeEEEe--CCEECCCCCCccccccc-cccccccccccc
Q 040111 1 IEDKEGIPPGQQRSIF--AGKQLEDGRTLADYKIQ-ESTLHLGWRADF 45 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~--~gk~L~D~~tL~~ygI~-~stl~L~~~~i~ 45 (133)
|++++|||+++|+|+| .|+ |+|+.+|++|+|+ +++|||++..+.
T Consensus 38 I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~~ 84 (100)
T 2dzm_A 38 LENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDLP 84 (100)
T ss_dssp HHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSSC
T ss_pred HHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCCC
Confidence 4678999999999997 566 9999999999999 999998776643
No 167
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.70 E-value=7.2e-09 Score=67.47 Aligned_cols=35 Identities=29% Similarity=0.483 Sum_probs=32.8
Q ss_pred CCCeEEEeCCEECCCC-CCccccccc-cccccccccc
Q 040111 9 PGQQRSIFAGKQLEDG-RTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 9 ~~~Q~Li~~gk~L~D~-~tL~~ygI~-~stl~L~~~~ 43 (133)
+++|+|+|+|++|+|+ .+|++|||. +++|||+++.
T Consensus 42 ~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~ 78 (95)
T 1wia_A 42 ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSP 78 (95)
T ss_dssp TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCC
T ss_pred cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECC
Confidence 6999999999999999 999999999 9999987765
No 168
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.68 E-value=8.6e-10 Score=72.30 Aligned_cols=42 Identities=24% Similarity=0.449 Sum_probs=36.7
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|||+++|+|+|.|++|+ +.+|++|+|. +++|+|+.+.
T Consensus 46 I~~~tgip~~~QrL~~~Gk~Ld-d~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 46 IHSITGLPPAMQKVMYKGLVPE-DKTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp HHHHHCSCSTTCCCBSSSBCCS-SSBHHHHCCCTTEEEEECCSS
T ss_pred HHHHHCcCHHHeEEEECCeeCC-cCcHHHCCCCCCCEEEEEecc
Confidence 4567899999999999999994 5599999999 9999987654
No 169
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.67 E-value=3e-09 Score=69.55 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=35.6
Q ss_pred CCcccCCCCCCeEEEeCC---EE----CCCCCCccccccc-cccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAG---KQ----LEDGRTLADYKIQ-ESTLHLGW 41 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~g---k~----L~D~~tL~~ygI~-~stl~L~~ 41 (133)
|++++|||+++|||+|.| +. ++|+.+|++|||. +++||+.-
T Consensus 38 i~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 38 LELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp HHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred HHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 467899999999999987 43 5899999999999 99999754
No 170
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.64 E-value=9e-10 Score=73.83 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=29.9
Q ss_pred CCeEEEeCCEECC-CCCCccccccc-cccccccccc
Q 040111 10 GQQRSIFAGKQLE-DGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 10 ~~Q~Li~~gk~L~-D~~tL~~ygI~-~stl~L~~~~ 43 (133)
++|+|+|+|++|. |+.||++|||. +++|||+.+.
T Consensus 61 ~q~~Li~~Gk~L~dD~~tL~dygI~~g~~l~lv~~l 96 (105)
T 1v2y_A 61 RTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIKKL 96 (105)
T ss_dssp TTEEEESSSCEECCSSSBHHHHTCCSSEEEEEEECS
T ss_pred eeEEEEeCCcCccCCcCCHHHcCCCCCCEEEEEehh
Confidence 5789999999996 67999999999 9999987654
No 171
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=98.57 E-value=1.3e-08 Score=69.62 Aligned_cols=43 Identities=14% Similarity=0.151 Sum_probs=36.7
Q ss_pred CCcccCCCCCCeEEEeCC---E---E-CCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAG---K---Q-LEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~g---k---~-L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|||+++|||+|.| + + ++|+.+|++|||. +++|||.-..
T Consensus 37 i~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~~ 87 (122)
T 1t0y_A 37 LELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDVT 87 (122)
T ss_dssp HHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEECT
T ss_pred HHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeCC
Confidence 467899999999999987 4 3 4899999999999 9999986543
No 172
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.51 E-value=7.6e-08 Score=63.14 Aligned_cols=51 Identities=8% Similarity=0.078 Sum_probs=43.4
Q ss_pred CCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCc--ccccccc
Q 040111 50 DPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFF--EEVLSFF 100 (133)
Q Consensus 50 ~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d--~~tL~dy 100 (133)
.+..+.+.+.+++|+..+|++|++++||||++|+|+|+|+.|.- ..+-+.|
T Consensus 22 ~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~ 74 (94)
T 4efo_A 22 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHF 74 (94)
T ss_dssp TTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGS
T ss_pred cceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccC
Confidence 35668899999999999999999999999999999999988764 3444455
No 173
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=98.46 E-value=1.9e-08 Score=73.78 Aligned_cols=39 Identities=13% Similarity=0.122 Sum_probs=0.0
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCccccccccccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~~stl~L~~~~ 43 (133)
|++.+|||+++|+|+|+|++|+|+.||+ .+++|||+++.
T Consensus 30 I~~keGIP~~qQRLIf~GK~LeD~~TLs----~~STLhLvlRL 68 (189)
T 2xzm_9 30 ISQDMGFEIDMMTLVNNGFIAPNTELVT----DDVTYYLSLKL 68 (189)
T ss_dssp -------------------------------------------
T ss_pred HHHHhCcChhHEEEEecCeECCCCCccc----CCCEEEEEEec
Confidence 6788999999999999999999999998 67899987765
No 174
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.46 E-value=3.3e-08 Score=79.13 Aligned_cols=40 Identities=28% Similarity=0.493 Sum_probs=35.4
Q ss_pred ccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 4 KEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 4 ~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
++|||+++|+|+|+||+|+|+.+|.+|||. +++|++++..
T Consensus 43 ~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k 83 (368)
T 1oqy_A 43 RDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 83 (368)
T ss_dssp SSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEEC
T ss_pred cCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEec
Confidence 678999999999999999999999999999 9999444433
No 175
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.43 E-value=7.8e-08 Score=62.99 Aligned_cols=42 Identities=21% Similarity=0.353 Sum_probs=38.6
Q ss_pred CcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 2 EDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 2 ~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
+++.|+|+++|||+|.|+.|+++.|+++|++. +++|++++++
T Consensus 38 ~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~ 80 (94)
T 2io1_B 38 CERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQ 80 (94)
T ss_dssp HHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred HHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEec
Confidence 46789999999999999999999999999999 9999976654
No 176
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=98.35 E-value=3.9e-08 Score=77.33 Aligned_cols=43 Identities=19% Similarity=0.318 Sum_probs=39.3
Q ss_pred CCcccCCCCCCeEEE---eCCEECCCCCCccccccc-cccccccccc
Q 040111 1 IEDKEGIPPGQQRSI---FAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 1 I~~~~gip~~~Q~Li---~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
|++++|||+++|+|+ |.|++|+|+.+|++|||+ |++|+|+.+.
T Consensus 34 I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~ 80 (320)
T 3shq_A 34 IFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGST 80 (320)
T ss_dssp HHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCC
T ss_pred HHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccc
Confidence 467899999999999 899999999999999999 9999999876
No 177
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.31 E-value=2.9e-07 Score=57.18 Aligned_cols=39 Identities=23% Similarity=0.392 Sum_probs=36.3
Q ss_pred CcccCCCCCCeEEEeCCEECCCCCCccccccc-ccccccc
Q 040111 2 EDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLG 40 (133)
Q Consensus 2 ~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~ 40 (133)
+++.|+|+++|||+|.|+.|.++.|.++|++. +++|++.
T Consensus 32 ~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 32 CERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp HHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred HHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 46789999999999999999999999999999 9999975
No 178
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.30 E-value=6.1e-07 Score=60.89 Aligned_cols=61 Identities=10% Similarity=0.018 Sum_probs=57.4
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVV 104 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~ 104 (133)
|.|+..+|..+.+.|.+++++..|+...+++.|+++++++++|.|+.|.++.|.+++++-.
T Consensus 43 LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MED 103 (115)
T 3kyd_D 43 LKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEE 103 (115)
T ss_dssp EEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCT
T ss_pred EEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCC
Confidence 7788888998999999999999999999999999999999999999999999999998743
No 179
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.28 E-value=5.8e-08 Score=64.81 Aligned_cols=42 Identities=17% Similarity=0.225 Sum_probs=36.9
Q ss_pred CCcccCCCCCCeEEEeCCE-----------E----CCCCCCccccccc-ccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGK-----------Q----LEDGRTLADYKIQ-ESTLHLGWR 42 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk-----------~----L~D~~tL~~ygI~-~stl~L~~~ 42 (133)
|+++++||+++|+|+|.|+ + ++|+.+|++|||. +++|||...
T Consensus 37 I~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G~~L~l~~~ 94 (107)
T 1wf9_A 37 IQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMVYLAYE 94 (107)
T ss_dssp HHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCEEECCCS
T ss_pred HHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCCCEEEEEeC
Confidence 4578999999999999988 4 5899999999999 999997654
No 180
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.27 E-value=4.9e-07 Score=58.84 Aligned_cols=42 Identities=21% Similarity=0.353 Sum_probs=38.2
Q ss_pred CcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 2 EDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 2 ~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
+++.|+|++++||+|.|+.|.++.|+++|++. +++|++.+++
T Consensus 36 ~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q 78 (91)
T 2io0_B 36 CERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQ 78 (91)
T ss_dssp HHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC
T ss_pred HHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEec
Confidence 46789999999999999999999999999999 9999976554
No 181
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.18 E-value=6.2e-07 Score=58.46 Aligned_cols=42 Identities=21% Similarity=0.353 Sum_probs=38.3
Q ss_pred CcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 2 EDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 2 ~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
+++.|+|++++||+|.|+.|.++.|+++|++. +++|++.+++
T Consensus 48 ~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q 90 (93)
T 2d07_B 48 CERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQ 90 (93)
T ss_dssp HHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC
T ss_pred HHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeec
Confidence 46789999999999999999999999999999 9999987654
No 182
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.11 E-value=4.8e-07 Score=57.85 Aligned_cols=41 Identities=34% Similarity=0.428 Sum_probs=34.8
Q ss_pred CCcccCCCCCCeEEEeC--CEECC---CCCCccccccc-cccccccc
Q 040111 1 IEDKEGIPPGQQRSIFA--GKQLE---DGRTLADYKIQ-ESTLHLGW 41 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~--gk~L~---D~~tL~~ygI~-~stl~L~~ 41 (133)
|++++|||+++|+|+|+ +|+|+ |+.+|++|||. +++|++.-
T Consensus 30 I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 30 IAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp HHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred HHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 45678999999999997 47774 78999999999 99999653
No 183
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.10 E-value=1.8e-06 Score=63.78 Aligned_cols=58 Identities=3% Similarity=-0.065 Sum_probs=54.1
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCcccccccccc
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWF 102 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~ 102 (133)
|.|+. +|..+.+.+.+++++..|+...+++.|+|+.++|++|.|+.|.++.|.+++++
T Consensus 32 LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~M 89 (200)
T 3pge_A 32 LKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDM 89 (200)
T ss_dssp EEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTC
T ss_pred EEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCC
Confidence 55654 78889999999999999999999999999999999999999999999999996
No 184
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.09 E-value=9.7e-07 Score=55.81 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=36.0
Q ss_pred CcccCCCCCCeEEEeCCEECCCCCCccccccc-ccccccc
Q 040111 2 EDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLG 40 (133)
Q Consensus 2 ~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~ 40 (133)
+++.|+|+++|||+|.|+.|.++.|.++|++. +++|++.
T Consensus 39 ~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 39 EEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp HHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred HHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 46789999999999999999999999999999 9999864
No 185
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.07 E-value=1.1e-06 Score=55.76 Aligned_cols=60 Identities=8% Similarity=-0.031 Sum_probs=50.4
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcc-----cCccccccccccEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPF-----FFFEEVLSFFWFVV 104 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~-----L~d~~tL~dy~~~~ 104 (133)
+.||+.+| +..+++++++|+.+|+++|++..+++++.|.+.++..+ ...+.+|+++++..
T Consensus 7 lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~h 71 (80)
T 2pjh_A 7 IRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKH 71 (80)
T ss_dssp CEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCT
T ss_pred EEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCC
Confidence 66777776 55688999999999999999999999999999887776 34677899998864
No 186
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.05 E-value=8.7e-07 Score=59.04 Aligned_cols=42 Identities=21% Similarity=0.353 Sum_probs=38.0
Q ss_pred CcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 2 EDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 2 ~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
+++.|+|+++|||+|.|+.|.++.|+.+|++. +++|++++++
T Consensus 55 ~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q 97 (104)
T 1wz0_A 55 CERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQ 97 (104)
T ss_dssp HHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCC
T ss_pred HHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEec
Confidence 46789999999999999999999999999999 9999976543
No 187
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.05 E-value=1.6e-06 Score=57.98 Aligned_cols=42 Identities=12% Similarity=0.288 Sum_probs=38.3
Q ss_pred CcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 2 EDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 2 ~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
+++.|+|++++||+|.|+.|.++.|.++|++. +++|++.+++
T Consensus 61 ~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q 103 (106)
T 2eke_C 61 AKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 103 (106)
T ss_dssp HHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC
T ss_pred HHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeec
Confidence 46789999999999999999999999999999 9999987654
No 188
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=97.92 E-value=1.2e-06 Score=58.93 Aligned_cols=42 Identities=17% Similarity=0.355 Sum_probs=38.1
Q ss_pred CcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 2 EDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 2 ~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
+++.|+|+++|||+|.|+.|.++.|+++|++. +++|++++.+
T Consensus 57 ~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q 99 (110)
T 2k8h_A 57 CKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQ 99 (110)
T ss_dssp HHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCC
T ss_pred HHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcc
Confidence 46789999999999999999999999999999 9999976554
No 189
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.91 E-value=1.5e-05 Score=50.28 Aligned_cols=59 Identities=5% Similarity=0.012 Sum_probs=53.3
Q ss_pred ccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCC-ceEEEeCCcccCccccccccccE
Q 040111 45 FCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPP-AEADLLKFPFFFFEEVLSFFWFV 103 (133)
Q Consensus 45 ~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~-~q~L~~~gk~L~d~~tL~dy~~~ 103 (133)
..++....-+.+.|.++++|.+|-+.-+.+.|||++ ..+|.|.|..|+.+++++||.++
T Consensus 13 ~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~Dleme 72 (82)
T 3goe_A 13 LLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELE 72 (82)
T ss_dssp EEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCC
T ss_pred hhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCc
Confidence 445555667889999999999999999999999999 99999999999999999999874
No 190
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=97.89 E-value=5.9e-06 Score=60.70 Aligned_cols=60 Identities=3% Similarity=-0.087 Sum_probs=54.9
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVV 104 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~ 104 (133)
|.|+. +|..+.+.|.+++++..|+...+++.|+++.+++++|.|+.|.++.|.+++++-.
T Consensus 60 LKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMED 119 (207)
T 3tix_A 60 LKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMED 119 (207)
T ss_dssp EEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCT
T ss_pred EEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCC
Confidence 55653 7888999999999999999999999999999999999999999999999999733
No 191
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=97.87 E-value=3.2e-06 Score=66.11 Aligned_cols=36 Identities=78% Similarity=1.212 Sum_probs=31.9
Q ss_pred CCcccCCCCCCeEEEeCCEECCCCCCcccccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQEST 36 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~~st 36 (133)
|++++|||+++|+|+|+|++|+|+.+|++|+|....
T Consensus 263 I~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gs 298 (307)
T 3ai5_A 263 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 298 (307)
T ss_dssp HHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTC
T ss_pred HHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCC
Confidence 456789999999999999999999999999986444
No 192
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=97.74 E-value=4.1e-06 Score=62.29 Aligned_cols=64 Identities=5% Similarity=-0.069 Sum_probs=0.0
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVI 108 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~ 108 (133)
|.| ..+|..+.+.|.++++...|+...+++.|++++++|++|.|+.+.++.|.+++++...-.|
T Consensus 24 LKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtI 87 (227)
T 3v7o_A 24 LKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDII 87 (227)
T ss_dssp -----------------------------------------------------------------
T ss_pred EEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEE
Confidence 566 5678889999999999999999999999999999999999999999999999997544433
No 193
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.72 E-value=1.2e-05 Score=52.35 Aligned_cols=41 Identities=17% Similarity=0.355 Sum_probs=34.3
Q ss_pred CCcccCCCCCCeEEEeCC------E-EC-CCCCCccccccc-cccccccc
Q 040111 1 IEDKEGIPPGQQRSIFAG------K-QL-EDGRTLADYKIQ-ESTLHLGW 41 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~g------k-~L-~D~~tL~~ygI~-~stl~L~~ 41 (133)
|++.+|+|+.+|+|+|.+ . .| +|..+|+.||+. +++||+..
T Consensus 42 i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~d 91 (97)
T 1wjn_A 42 LSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVRW 91 (97)
T ss_dssp HHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEEC
T ss_pred HHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEEe
Confidence 467899999999999873 2 36 678999999999 99999754
No 194
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=97.46 E-value=7.3e-05 Score=50.57 Aligned_cols=42 Identities=19% Similarity=0.431 Sum_probs=38.3
Q ss_pred CcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 2 EDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 2 ~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
+++.|+|+.++|++|.|+.|.++.|..++++. +++|++.+.+
T Consensus 71 ~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 71 CQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp HHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred HHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence 35789999999999999999999999999999 9999987654
No 195
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=97.37 E-value=6.5e-05 Score=55.37 Aligned_cols=42 Identities=12% Similarity=0.288 Sum_probs=39.9
Q ss_pred CcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 2 EDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 2 ~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
+++.|+|+.++|++|.|+.|.++.|..++++. +++|++.+++
T Consensus 59 ~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q 101 (200)
T 3pge_A 59 AKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 101 (200)
T ss_dssp HHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC
T ss_pred HHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEecc
Confidence 46789999999999999999999999999999 9999999988
No 196
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.33 E-value=0.00014 Score=53.73 Aligned_cols=58 Identities=3% Similarity=-0.065 Sum_probs=52.1
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCcccccccccc
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWF 102 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~ 102 (133)
|.|+. ++..+.+.+.++++...|+...+++.|+|+++++++|.|+.+.++++..+..+
T Consensus 24 ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ 81 (209)
T 3uf8_A 24 LKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDM 81 (209)
T ss_dssp EEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTC
T ss_pred EEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhh
Confidence 55665 67778899999999999999999999999999999999999999988888764
No 197
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.25 E-value=5.6e-05 Score=52.03 Aligned_cols=38 Identities=18% Similarity=0.100 Sum_probs=35.5
Q ss_pred ccccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCC
Q 040111 43 ADFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPP 80 (133)
Q Consensus 43 ~i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~ 80 (133)
.+.|+.++|...++.|+.+.+|.+++..|+.+.||+..
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~ 50 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNH 50 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCc
Confidence 48999999999999999999999999999999999754
No 198
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.16 E-value=0.001 Score=42.03 Aligned_cols=66 Identities=12% Similarity=-0.020 Sum_probs=56.1
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEE--eCCcccC---ccccccccccEEeEEEEe
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADL--LKFPFFF---FEEVLSFFWFVVVGVIFC 110 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~--~~gk~L~---d~~tL~dy~~~~~~~~~~ 110 (133)
|-||.++|+.+.-....++||.+|..-|.. .+.++....|+ |..+.+. .+.+|.+.++.+.+++++
T Consensus 10 i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~v 80 (84)
T 3qx1_A 10 LRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFL 80 (84)
T ss_dssp EEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEE
T ss_pred EEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEE
Confidence 778999999888888999999999999988 67888889998 5678884 368999999987776664
No 199
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.12 E-value=6.9e-05 Score=59.69 Aligned_cols=62 Identities=3% Similarity=-0.098 Sum_probs=0.0
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVG 106 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~ 106 (133)
+.|+. +|..+.+.|.++++...|+...+++.|+++++++++|.|+.+.++.|.+++++...-
T Consensus 24 LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD 85 (360)
T 3ix6_A 24 LKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDND 85 (360)
T ss_dssp ---------------------------------------------------------------
T ss_pred EEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccc
Confidence 56665 577888999999999999999999999999999999999999999999999864433
No 200
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.11 E-value=0.00041 Score=45.45 Aligned_cols=61 Identities=2% Similarity=-0.034 Sum_probs=54.5
Q ss_pred cccCCCCCC-CceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEE
Q 040111 44 DFCKNPDPQ-NITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVV 104 (133)
Q Consensus 44 i~Vk~~~g~-~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~ 104 (133)
|.|+..+|. .+.+.|.++++...|...-+++.|++++..+++|.|..+..+.|..++++-.
T Consensus 28 LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMED 89 (97)
T 2jxx_A 28 LRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMES 89 (97)
T ss_dssp EEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCT
T ss_pred EEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCC
Confidence 566667774 6889999999999999999999999999999999999999999999988743
No 201
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.04 E-value=0.0014 Score=43.55 Aligned_cols=78 Identities=8% Similarity=-0.134 Sum_probs=63.9
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEE--eCCcccC--c-cccccccccEEeEEEEeCceeeeee
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADL--LKFPFFF--F-EEVLSFFWFVVVGVIFCGCRVNFWN 118 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~--~~gk~L~--d-~~tL~dy~~~~~~~~~~~~~~~~~~ 118 (133)
|-||.++|..+.-....++||.+|.+-|....+.+.....|+ |..+.+. | +.+|.+.++.+.+++++--.-++..
T Consensus 16 IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~~~~~~ 95 (109)
T 2dzk_A 16 IQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPAGRPAT 95 (109)
T ss_dssp EEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECCSSCCC
T ss_pred EEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEECcCCcc
Confidence 789999999888889999999999999999888877888888 6788887 3 6799999998878777665555555
Q ss_pred ccc
Q 040111 119 ASL 121 (133)
Q Consensus 119 ~~~ 121 (133)
+..
T Consensus 96 a~~ 98 (109)
T 2dzk_A 96 SIV 98 (109)
T ss_dssp CCC
T ss_pred eee
Confidence 443
No 202
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.00022 Score=52.41 Aligned_cols=42 Identities=10% Similarity=0.251 Sum_probs=39.1
Q ss_pred CcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 2 EDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 2 ~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
+++.|+|+.+++++|.|+.|.++.|..++++. +++|++.+.+
T Consensus 87 cERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ 129 (207)
T 3tix_A 87 AKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQ 129 (207)
T ss_dssp HHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCC
T ss_pred HHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEec
Confidence 35789999999999999999999999999999 9999988777
No 203
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=96.79 E-value=0.0002 Score=53.23 Aligned_cols=42 Identities=12% Similarity=0.288 Sum_probs=0.0
Q ss_pred CcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 2 EDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 2 ~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
+++.|+|++++|++|.|+.+.++.|.+++++. +++|+++..+
T Consensus 51 cERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ 93 (227)
T 3v7o_A 51 AKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93 (227)
T ss_dssp -------------------------------------------
T ss_pred HHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecc
Confidence 57889999999999999999999999999999 9999987766
No 204
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.78 E-value=0.0007 Score=43.76 Aligned_cols=63 Identities=11% Similarity=0.026 Sum_probs=56.4
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVG 106 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~ 106 (133)
+.|-.++++...+.|.|++++.++-+.-.++.|+.+++..|.|+++.++-..+++.-++++++
T Consensus 12 v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnA 74 (90)
T 2al3_A 12 VSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNA 74 (90)
T ss_dssp EEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSC
T ss_pred EEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCC
Confidence 667788899999999999999999999999999999999999999999888888888876443
No 205
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=96.76 E-value=0.00041 Score=45.25 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=24.1
Q ss_pred CCcccCCCCCCeEEEeCCEEC--CCCCCcccccc
Q 040111 1 IEDKEGIPPGQQRSIFAGKQL--EDGRTLADYKI 32 (133)
Q Consensus 1 I~~~~gip~~~Q~Li~~gk~L--~D~~tL~~ygI 32 (133)
|++++|||+++|+|+|.|+.| +....-..|--
T Consensus 43 V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~ 76 (94)
T 4efo_A 43 VYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK 76 (94)
T ss_dssp HHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCC
T ss_pred HHHHhCCCHHHHHHHhCCCccccCCCCccccCCC
Confidence 467899999999999999875 44444445543
No 206
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=96.68 E-value=0.00027 Score=56.36 Aligned_cols=61 Identities=3% Similarity=-0.099 Sum_probs=0.0
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEe
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVV 105 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~ 105 (133)
|.|+. ++..+.+.+.++++...|+...+++.|+++.++++.|.|+.+.++.|.+++++...
T Consensus 33 lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~ 93 (389)
T 4da1_A 33 LKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDN 93 (389)
T ss_dssp --------------------------------------------------------------
T ss_pred EEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCC
Confidence 55555 67778899999999999999999999999999999999999999999999986433
No 207
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=95.98 E-value=0.0048 Score=40.16 Aligned_cols=59 Identities=8% Similarity=-0.014 Sum_probs=53.0
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFV 103 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~ 103 (133)
+.|+. .|..+.+.+..++....|....+++.|++++..+++|.|..+.++.|-++.++.
T Consensus 24 iKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~me 82 (95)
T 2l76_A 24 LKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLG 82 (95)
T ss_dssp EEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCC
T ss_pred EEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCC
Confidence 55664 577888999999999999999999999999999999999999999998888764
No 208
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=95.91 E-value=0.0054 Score=41.66 Aligned_cols=65 Identities=12% Similarity=0.080 Sum_probs=54.5
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEE--eCCccc--Cc-cccccccccEEeEEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADL--LKFPFF--FF-EEVLSFFWFVVVGVIF 109 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~--~~gk~L--~d-~~tL~dy~~~~~~~~~ 109 (133)
|-||.++|..+.-....++||.+|..-|... +.++....|+ |-.+.| .| +.+|.+.++.+.++++
T Consensus 46 IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Li 115 (124)
T 1wj4_A 46 LMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVF 115 (124)
T ss_dssp EEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCE
T ss_pred EEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEE
Confidence 8899999998888899999999999999886 8888888888 678888 34 6899999987655443
No 209
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=95.83 E-value=0.0092 Score=46.98 Aligned_cols=99 Identities=17% Similarity=0.167 Sum_probs=71.5
Q ss_pred CEECCCCCCccccccc-cccccccccc--cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCC-CCceEEEeCC-----
Q 040111 18 GKQLEDGRTLADYKIQ-ESTLHLGWRA--DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIP-PPAEADLLKF----- 88 (133)
Q Consensus 18 gk~L~D~~tL~~ygI~-~stl~L~~~~--i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp-~~~q~L~~~g----- 88 (133)
|+=|++++||+.|++. +..++..-+. +.|..++|....+++++++|+.++-..|+++.|+. ++.--|.+..
T Consensus 59 ~~Wl~~~~~l~~y~~~~~~~l~~~~~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~ 138 (371)
T 3ivf_A 59 GIWLEAGKALDYYMLRNGDTMEYRKKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKK 138 (371)
T ss_dssp CEECCTTSBGGGGTCCTTCEEEEEECEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC-----
T ss_pred CEeccCCCCHHHhCCCCCceeeccCceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEeccccc
Confidence 3448888999999999 9998887666 77889999999999999999999999999999974 4445565532
Q ss_pred ----cccCccccccccccEE-eEEEEeCceeeeeec
Q 040111 89 ----PFFFFEEVLSFFWFVV-VGVIFCGCRVNFWNA 119 (133)
Q Consensus 89 ----k~L~d~~tL~dy~~~~-~~~~~~~~~~~~~~~ 119 (133)
..|+.++++.+-+... ..+.| +++||-.
T Consensus 139 ~~~~~wL~~~k~l~~q~~~~~~~l~f---rvKf~~~ 171 (371)
T 3ivf_A 139 DDELNWLDHGRTLREQGVEEHETLLL---RRKFFYS 171 (371)
T ss_dssp -----CCCTTSBTGGGTCCTTCEEEE---EECCCCB
T ss_pred chHHHHHhcCchhHhhCCCCCceEEE---EEEEecC
Confidence 3344455555543211 12222 5777753
No 210
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=95.60 E-value=0.0077 Score=37.93 Aligned_cols=39 Identities=15% Similarity=0.211 Sum_probs=34.9
Q ss_pred cccCCCCC-CeEEEeCCEECCCCCCccccccc-cccccccc
Q 040111 3 DKEGIPPG-QQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGW 41 (133)
Q Consensus 3 ~~~gip~~-~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~ 41 (133)
.+.|||++ .-+|.|.|..|+.+.++.+|++. +.-|.+++
T Consensus 41 ~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 41 TEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp HHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 45799999 89999999999999999999999 88887654
No 211
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=95.18 E-value=0.0034 Score=49.96 Aligned_cols=42 Identities=12% Similarity=0.288 Sum_probs=0.0
Q ss_pred CcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 2 EDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 2 ~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
+++.|++++++|++|.|+.+.++.|.+++++. +++|++..++
T Consensus 51 ~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q 93 (360)
T 3ix6_A 51 AKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93 (360)
T ss_dssp -------------------------------------------
T ss_pred HHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhcc
Confidence 57889999999999999999999999999999 9999998887
No 212
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=95.13 E-value=0.012 Score=37.20 Aligned_cols=59 Identities=12% Similarity=-0.097 Sum_probs=49.1
Q ss_pred CCCCCCceeeccccCcHHHHHHHhhhhcCCCC-----CceEEEeCCcccCccccccccccEEeE
Q 040111 48 NPDPQNITLEVESSDTIDNVKAKIQDKKRIPP-----PAEADLLKFPFFFFEEVLSFFWFVVVG 106 (133)
Q Consensus 48 ~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~-----~~q~L~~~gk~L~d~~tL~dy~~~~~~ 106 (133)
--.++.+.+.++...|+..|.+.+.+..+++. .+.++.-.+..|.+++.|+||.+++..
T Consensus 13 ~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD 76 (81)
T 2bps_A 13 HYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGD 76 (81)
T ss_dssp TTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTC
T ss_pred ccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCC
Confidence 34688999999999999999999999998653 345666788889999999999987543
No 213
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.12 E-value=0.025 Score=37.32 Aligned_cols=66 Identities=8% Similarity=-0.181 Sum_probs=54.4
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEE--eCCcccC-c-cccccccccEEeEEEEe
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADL--LKFPFFF-F-EEVLSFFWFVVVGVIFC 110 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~--~~gk~L~-d-~~tL~dy~~~~~~~~~~ 110 (133)
|-||.++|+.+.-....++||.+|..-|... +..+....|+ |-.+.+. | +.||.+.++.+.+++++
T Consensus 26 IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~V 95 (109)
T 2cr5_A 26 VALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNV 95 (109)
T ss_dssp EEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEE
T ss_pred EEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEE
Confidence 7899999998888888999999999999964 6667778887 6678886 3 68999999887776654
No 214
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=95.06 E-value=0.011 Score=43.47 Aligned_cols=42 Identities=12% Similarity=0.288 Sum_probs=38.8
Q ss_pred CcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 2 EDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 2 ~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
+++.|+|++++|++|.|+.+.++.|..+..+. +++|++...+
T Consensus 51 ~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq 93 (209)
T 3uf8_A 51 AKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93 (209)
T ss_dssp HHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSC
T ss_pred HHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccc
Confidence 46789999999999999999999999999999 9999977766
No 215
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=94.73 E-value=0.019 Score=39.03 Aligned_cols=64 Identities=9% Similarity=0.024 Sum_probs=52.8
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhc-CCCCCceEEE--eCCcccCc-cccccccccEEeEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKK-RIPPPAEADL--LKFPFFFF-EEVLSFFWFVVVGV 107 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~-gIp~~~q~L~--~~gk~L~d-~~tL~dy~~~~~~~ 107 (133)
|-||.++|..+.-....++||.+|.+-|.... +.+.....|+ |-.+.+.| +.||.+.++.+.++
T Consensus 55 IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psav 122 (127)
T 1s3s_G 55 IQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVI 122 (127)
T ss_dssp EEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEE
T ss_pred EEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceE
Confidence 88999999988888999999999999999863 4666778887 67888886 68999999865333
No 216
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.65 E-value=0.031 Score=35.63 Aligned_cols=62 Identities=11% Similarity=0.012 Sum_probs=51.5
Q ss_pred ccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEe---CCcccCccccccccccEEeE
Q 040111 45 FCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLL---KFPFFFFEEVLSFFWFVVVG 106 (133)
Q Consensus 45 ~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~---~gk~L~d~~tL~dy~~~~~~ 106 (133)
.|+....+...+.|+|..+..++-..|.+++.+.|+.-.|.. .+.+|+-+.+|.||++.++-
T Consensus 14 vVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirELy 78 (91)
T 2daj_A 14 VINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRELY 78 (91)
T ss_dssp EEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSEEE
T ss_pred EEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhhhh
Confidence 344444566778999999999999999999999999999984 56677789999999997643
No 217
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=94.49 E-value=0.0066 Score=48.26 Aligned_cols=42 Identities=10% Similarity=0.273 Sum_probs=0.0
Q ss_pred CcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 2 EDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 2 ~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
+++.|+|+++++++|.|+.+.++.|..+.++. +.+|++...+
T Consensus 60 ~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q 102 (389)
T 4da1_A 60 AKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQ 102 (389)
T ss_dssp -------------------------------------------
T ss_pred HHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecc
Confidence 46789999999999999999999999999999 9999977766
No 218
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=93.57 E-value=0.03 Score=36.47 Aligned_cols=37 Identities=16% Similarity=0.308 Sum_probs=34.0
Q ss_pred cccCCCCCCeEEEeCCEECCCCCCccccccc-cccccc
Q 040111 3 DKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHL 39 (133)
Q Consensus 3 ~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L 39 (133)
++.|++++.-+++|.|..|.++.|..+.++. +.+|.+
T Consensus 58 ~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv 95 (97)
T 2jxx_A 58 EAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEV 95 (97)
T ss_dssp HHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEE
T ss_pred HHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEE
Confidence 4678999999999999999999999999999 988875
No 219
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=92.76 E-value=0.077 Score=36.19 Aligned_cols=33 Identities=6% Similarity=0.079 Sum_probs=30.4
Q ss_pred CceeeccccCcHHHHHHHhhhhcCCCCCceEEE
Q 040111 53 NITLEVESSDTIDNVKAKIQDKKRIPPPAEADL 85 (133)
Q Consensus 53 ~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~ 85 (133)
..++.|..++|+.+++.+|++..|+|+++|||-
T Consensus 57 ~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW 89 (130)
T 2kvr_A 57 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLW 89 (130)
T ss_dssp CEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEE
T ss_pred cceEEEeccCcHHHHHHHHHHHhCCCcccEEEE
Confidence 356789999999999999999999999999986
No 220
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=92.42 E-value=0.14 Score=34.17 Aligned_cols=59 Identities=22% Similarity=0.174 Sum_probs=40.9
Q ss_pred CCCCceeeccccCcHHHHHHHhhhhc--CCC------CCceEEEe----CCcccCcc-------------ccccccccEE
Q 040111 50 DPQNITLEVESSDTIDNVKAKIQDKK--RIP------PPAEADLL----KFPFFFFE-------------EVLSFFWFVV 104 (133)
Q Consensus 50 ~g~~~~l~V~~~~tV~~LK~~I~~~~--gIp------~~~q~L~~----~gk~L~d~-------------~tL~dy~~~~ 104 (133)
.++.+++.|-..+||.++|++|-+.. |.| +++..|-+ +|+.|.|. .||++|+|.+
T Consensus 22 ~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 101 (111)
T 4e71_A 22 GVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRD 101 (111)
T ss_dssp CCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCT
T ss_pred CCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCC
Confidence 34568888889999999999999884 554 46777876 34556552 3688888876
Q ss_pred eEEE
Q 040111 105 VGVI 108 (133)
Q Consensus 105 ~~~~ 108 (133)
.+.+
T Consensus 102 gatl 105 (111)
T 4e71_A 102 GATL 105 (111)
T ss_dssp TCEE
T ss_pred CCEE
Confidence 5544
No 221
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=90.55 E-value=0.37 Score=30.56 Aligned_cols=55 Identities=13% Similarity=0.049 Sum_probs=46.6
Q ss_pred ceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccEEeEEE
Q 040111 54 ITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFVVVGVI 108 (133)
Q Consensus 54 ~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~~~~~~ 108 (133)
+.-+++-++++..||..++.+.|++.+...+...+.+|+.+++|.|=.+.-.|.|
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlV 59 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTV 59 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEE
Confidence 3446677889999999999999999999999999999999999999876544443
No 222
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=90.39 E-value=0.091 Score=34.07 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=35.7
Q ss_pred cccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccc
Q 040111 3 DKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGW 41 (133)
Q Consensus 3 ~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~ 41 (133)
++.|+++..-|++|.|..+.++.|..+.++. +.+|..++
T Consensus 52 ~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 52 THLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp HHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred hhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 5789999999999999999999999999999 99988654
No 223
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=88.89 E-value=0.066 Score=33.32 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=30.3
Q ss_pred CcccCCCCCCeEEEeCCEE-----CCCCCCccccccc-ccccccc
Q 040111 2 EDKEGIPPGQQRSIFAGKQ-----LEDGRTLADYKIQ-ESTLHLG 40 (133)
Q Consensus 2 ~~~~gip~~~Q~Li~~gk~-----L~D~~tL~~ygI~-~stl~L~ 40 (133)
++..++|++.|.+.++-.+ +.++.+|++.||. |++|.+.
T Consensus 34 ~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 34 AKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp HHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred HHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 4567899888888776443 3578899999999 9998864
No 224
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=88.84 E-value=0.54 Score=31.94 Aligned_cols=59 Identities=14% Similarity=0.128 Sum_probs=43.0
Q ss_pred CCCCceeeccccCcHHHHHHHhhhhc--CCC------CCceEEEe-CC---c-ccCcc-------------ccccccccE
Q 040111 50 DPQNITLEVESSDTIDNVKAKIQDKK--RIP------PPAEADLL-KF---P-FFFFE-------------EVLSFFWFV 103 (133)
Q Consensus 50 ~g~~~~l~V~~~~tV~~LK~~I~~~~--gIp------~~~q~L~~-~g---k-~L~d~-------------~tL~dy~~~ 103 (133)
++..+++.|=..+||.++|++|-+.. |.| +++..|-| .| + .|.|. .||++|+|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 45568888889999999999999884 554 46778886 33 3 35552 378999987
Q ss_pred EeEEE
Q 040111 104 VVGVI 108 (133)
Q Consensus 104 ~~~~~ 108 (133)
+.+.+
T Consensus 95 dgatv 99 (127)
T 3h6n_A 95 EGASL 99 (127)
T ss_dssp TTCEE
T ss_pred CCCEE
Confidence 66644
No 225
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=88.76 E-value=0.24 Score=31.23 Aligned_cols=38 Identities=5% Similarity=0.041 Sum_probs=35.3
Q ss_pred CCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCc
Q 040111 52 QNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFP 89 (133)
Q Consensus 52 ~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk 89 (133)
-++.+.|++..+..+|+++|.++.++|++.-.|.|...
T Consensus 14 ~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 14 YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 57889999999999999999999999999999999775
No 226
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=88.68 E-value=0.74 Score=39.27 Aligned_cols=67 Identities=15% Similarity=0.144 Sum_probs=47.9
Q ss_pred CCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCC-cccCcccccccccc-----------EEeEEEEeCceeee
Q 040111 50 DPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKF-PFFFFEEVLSFFWF-----------VVVGVIFCGCRVNF 116 (133)
Q Consensus 50 ~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~g-k~L~d~~tL~dy~~-----------~~~~~~~~~~~~~~ 116 (133)
..+...+.+.+++|+.+++..|++.+|||++.|.+++.+ -.+....+.+.|.+ ...-+.|..|..+|
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQYVIDCTVIDGRQGEGDLIFLFDNRKTVY 398 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGSCCCSCC-------CCCEEECSSCC---
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhheeccccccccCCCCceEEEEecccccc
Confidence 455667888999999999999999999999999999754 44444556665431 22346777777777
No 227
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=87.34 E-value=0.52 Score=28.78 Aligned_cols=51 Identities=8% Similarity=0.012 Sum_probs=37.8
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCcccccc
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLS 98 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~ 98 (133)
+.|+........+++++..|+++|-+. .|+|++...+..+|+....+..+.
T Consensus 3 v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lgl~~~~VvV~vNG~~v~~d~~l~ 53 (74)
T 2l32_A 3 VTVEVVGEETSEVAVDDDGTYADLVRA----VDLSPHEVTVLVDGRPVPEDQSVE 53 (74)
T ss_dssp EEEECSSSSEEEEECSTTCSHHHHHHT----TCCCSSCCCEECCCCCCCTTSSSC
T ss_pred EEEEEeCccceeEEcCCCCcHHHHHHH----cCCCcceEEEEECCEECCHHHCCC
Confidence 344444333345789999999998754 899999998889999998777553
No 228
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=86.82 E-value=0.88 Score=35.25 Aligned_cols=63 Identities=8% Similarity=-0.047 Sum_probs=43.6
Q ss_pred CceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCccc--Ccccccccccc--EEeEEEEeCceee
Q 040111 53 NITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFF--FFEEVLSFFWF--VVVGVIFCGCRVN 115 (133)
Q Consensus 53 ~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L--~d~~tL~dy~~--~~~~~~~~~~~~~ 115 (133)
...+.+.+..|+.++++++++.++++++.|.+++.+..+ +...+.+.|.= .+.-+++++..+|
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (396)
T 4eut_A 323 AHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSREGN 389 (396)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCCCCSSSCEEEEECC--
T ss_pred EEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCCCCCCCCeEEEecCCC
Confidence 456677889999999999999999999999999988333 23455666642 2222455544443
No 229
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=86.45 E-value=0.42 Score=32.95 Aligned_cols=56 Identities=21% Similarity=0.204 Sum_probs=40.8
Q ss_pred CCCceeeccccCcHHHHHHHhhhhc--CCC------CCceEEEe----CCc-ccCcc-------------ccccccccEE
Q 040111 51 PQNITLEVESSDTIDNVKAKIQDKK--RIP------PPAEADLL----KFP-FFFFE-------------EVLSFFWFVV 104 (133)
Q Consensus 51 g~~~~l~V~~~~tV~~LK~~I~~~~--gIp------~~~q~L~~----~gk-~L~d~-------------~tL~dy~~~~ 104 (133)
.+.+++.|=..+||.++|++|-+.. |.| +++.-|-+ +|+ .|.|. .||+.|++..
T Consensus 40 ~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 40 AQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 3568889999999999999999984 565 44556665 233 36653 3789999876
Q ss_pred eE
Q 040111 105 VG 106 (133)
Q Consensus 105 ~~ 106 (133)
.+
T Consensus 120 ga 121 (138)
T 2r2o_A 120 GA 121 (138)
T ss_dssp TC
T ss_pred CC
Confidence 55
No 230
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=85.19 E-value=1.5 Score=32.24 Aligned_cols=56 Identities=11% Similarity=0.101 Sum_probs=43.1
Q ss_pred ceeeccccCcHHHHHHHhhhhcCCCCC-ceEEEe-C----CcccCc-cccccccccEEeEEEE
Q 040111 54 ITLEVESSDTIDNVKAKIQDKKRIPPP-AEADLL-K----FPFFFF-EEVLSFFWFVVVGVIF 109 (133)
Q Consensus 54 ~~l~V~~~~tV~~LK~~I~~~~gIp~~-~q~L~~-~----gk~L~d-~~tL~dy~~~~~~~~~ 109 (133)
++..+...+||.+++..+....+|+++ ..||-. . ...|.| +.+|.++++...-.|+
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~il 216 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLV 216 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEE
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEE
Confidence 445678999999999999999999997 688773 2 345665 5899999886555444
No 231
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=84.11 E-value=2.3 Score=25.24 Aligned_cols=45 Identities=18% Similarity=0.053 Sum_probs=34.2
Q ss_pred eeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCccccccccccE
Q 040111 55 TLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFFWFV 103 (133)
Q Consensus 55 ~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy~~~ 103 (133)
.++++...|+.+|.+.+ ++++....+..+|.....+..|++=+-.
T Consensus 17 ~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~~L~~gD~V 61 (70)
T 1ryj_A 17 ILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEEEIFDGDII 61 (70)
T ss_dssp EEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTSBCCTTCEE
T ss_pred eEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcccCCCCCEE
Confidence 45666778999999875 6777777788899988877777776533
No 232
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=83.06 E-value=0.72 Score=38.18 Aligned_cols=33 Identities=6% Similarity=0.079 Sum_probs=30.3
Q ss_pred CceeeccccCcHHHHHHHhhhhcCCCCCceEEE
Q 040111 53 NITLEVESSDTIDNVKAKIQDKKRIPPPAEADL 85 (133)
Q Consensus 53 ~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~ 85 (133)
..++.|..++|+.+|+.+|++..|+|+++|||-
T Consensus 37 ~~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW 69 (530)
T 2ylm_A 37 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLW 69 (530)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTSCGGGEEEE
T ss_pred cceEEEcCcCCHHHHHHHHHHHhCcCcccEEEE
Confidence 456899999999999999999999999999985
No 233
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=80.86 E-value=1.1 Score=34.97 Aligned_cols=53 Identities=17% Similarity=0.183 Sum_probs=44.2
Q ss_pred CCCceeeccccCcHHHHHHHhhhhcC----CCCCceEEEe------CCcccCccccccccccE
Q 040111 51 PQNITLEVESSDTIDNVKAKIQDKKR----IPPPAEADLL------KFPFFFFEEVLSFFWFV 103 (133)
Q Consensus 51 g~~~~l~V~~~~tV~~LK~~I~~~~g----Ip~~~q~L~~------~gk~L~d~~tL~dy~~~ 103 (133)
+.+.++..++++||.++-.+|.++.. .++++.-|.. .|+-|++.++|..|++.
T Consensus 12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~ 74 (371)
T 3ivf_A 12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLR 74 (371)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCC
T ss_pred ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCC
Confidence 55677889999999999999988863 4788889988 45669999999999963
No 234
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=80.85 E-value=1.8 Score=27.42 Aligned_cols=42 Identities=19% Similarity=0.259 Sum_probs=35.6
Q ss_pred CcccCCCCCCeEEEeCCEECCCCCCccccccc-cccccccccc
Q 040111 2 EDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWRA 43 (133)
Q Consensus 2 ~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~~ 43 (133)
+++.|++-+.=.+..++.+|+++.+|.|.+++ ...+.+.+.-
T Consensus 23 e~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 23 EPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp HHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred HHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 56778888888888999999999999999999 8888765543
No 235
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=76.12 E-value=6.7 Score=24.77 Aligned_cols=47 Identities=9% Similarity=-0.122 Sum_probs=36.1
Q ss_pred cccCCC-CCCCceeeccccCcHHHHHHHhhhhcCCCCCc-eEEEeCCcc
Q 040111 44 DFCKNP-DPQNITLEVESSDTIDNVKAKIQDKKRIPPPA-EADLLKFPF 90 (133)
Q Consensus 44 i~Vk~~-~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~-q~L~~~gk~ 90 (133)
+.||.. +|..+.+.++++.+-.+|.+++.+.+++++++ ..+.|....
T Consensus 7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEe 55 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEE 55 (89)
T ss_dssp EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSS
T ss_pred EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCC
Confidence 344432 46778889999999999999999999987655 667776553
No 236
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=75.15 E-value=2.2 Score=31.05 Aligned_cols=55 Identities=18% Similarity=0.147 Sum_probs=41.2
Q ss_pred ceeeccccCcHHHHHHHhhhhcCCCCC-ceEEEe---C--CcccCc-cccccccccEEeEEE
Q 040111 54 ITLEVESSDTIDNVKAKIQDKKRIPPP-AEADLL---K--FPFFFF-EEVLSFFWFVVVGVI 108 (133)
Q Consensus 54 ~~l~V~~~~tV~~LK~~I~~~~gIp~~-~q~L~~---~--gk~L~d-~~tL~dy~~~~~~~~ 108 (133)
.++.++..+||.+++..+.+..+||++ +.||-. . ...|.| +.||.++++...-.|
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~i 203 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVL 203 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEE
T ss_pred eEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEE
Confidence 456778999999999999999999997 677752 1 234555 468999987544433
No 237
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=72.05 E-value=11 Score=23.48 Aligned_cols=52 Identities=12% Similarity=-0.058 Sum_probs=33.6
Q ss_pred eecccc-CcHHHHHHHhhhhcCCCCCceEEEeCCcccCc----cccccccccEEeEEEEeC
Q 040111 56 LEVESS-DTIDNVKAKIQDKKRIPPPAEADLLKFPFFFF----EEVLSFFWFVVVGVIFCG 111 (133)
Q Consensus 56 l~V~~~-~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d----~~tL~dy~~~~~~~~~~~ 111 (133)
++++.. .||.+|.+.+ ++++....+..+|..... +..|++=+-..+--.++|
T Consensus 30 ~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~~~V~G 86 (87)
T 1tyg_B 30 VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKERYHEVELCDRDVIEIVHFVGG 86 (87)
T ss_dssp ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGGGTTTSBCCSSSEEEEEEECCC
T ss_pred EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChhhcCCcCCCCCCEEEEEccccc
Confidence 445565 7999998875 677777777788888764 345766654433333333
No 238
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=68.69 E-value=1.6 Score=27.86 Aligned_cols=41 Identities=10% Similarity=0.039 Sum_probs=35.4
Q ss_pred CcccCCCCCCeEEEeCCEECCCCCCccccccc-ccccccccc
Q 040111 2 EDKEGIPPGQQRSIFAGKQLEDGRTLADYKIQ-ESTLHLGWR 42 (133)
Q Consensus 2 ~~~~gip~~~Q~Li~~gk~L~D~~tL~~ygI~-~stl~L~~~ 42 (133)
.+++|+.+++=.|-|++|+|+-...+.--|+. ++.+.|+..
T Consensus 40 C~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 40 CRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp HHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred HHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence 35788988888999999999888999999999 999997543
No 239
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=68.11 E-value=6.2 Score=24.89 Aligned_cols=42 Identities=10% Similarity=0.013 Sum_probs=36.7
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADL 85 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~ 85 (133)
+.+..++++...++|.+..|+.+.-.+..++.++.|+.-..+
T Consensus 10 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 51 (86)
T 1wxm_A 10 VKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVY 51 (86)
T ss_dssp EEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEE
T ss_pred EEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 567788999999999999999999999999999988765555
No 240
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=67.60 E-value=5.1 Score=34.00 Aligned_cols=57 Identities=21% Similarity=0.220 Sum_probs=41.1
Q ss_pred CCceeeccccCcHHHHHHHhhhhc--CCC------CCceEEEe-C---Cc-ccCcc-------------ccccccccEEe
Q 040111 52 QNITLEVESSDTIDNVKAKIQDKK--RIP------PPAEADLL-K---FP-FFFFE-------------EVLSFFWFVVV 105 (133)
Q Consensus 52 ~~~~l~V~~~~tV~~LK~~I~~~~--gIp------~~~q~L~~-~---gk-~L~d~-------------~tL~dy~~~~~ 105 (133)
+.+++.|-..+||.++|++|-+.. |.| +++..|-+ . |+ .|.|. .||++|++.+.
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 457888889999999999999773 555 45666776 2 32 35552 37999999776
Q ss_pred EEE
Q 040111 106 GVI 108 (133)
Q Consensus 106 ~~~ 108 (133)
+++
T Consensus 354 a~v 356 (644)
T 3hm6_X 354 ATV 356 (644)
T ss_dssp CEE
T ss_pred cEE
Confidence 644
No 241
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=66.95 E-value=3.1 Score=26.97 Aligned_cols=42 Identities=12% Similarity=-0.001 Sum_probs=33.6
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCC-CCceEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIP-PPAEADL 85 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp-~~~q~L~ 85 (133)
+.|-..+|....+.|++++|+.++-++++++.+.. .....|+
T Consensus 12 vkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLv 54 (100)
T 1wgr_A 12 VKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLV 54 (100)
T ss_dssp EEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEE
Confidence 44455788999999999999999999999999864 4444454
No 242
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=66.10 E-value=4.7 Score=30.74 Aligned_cols=56 Identities=14% Similarity=0.093 Sum_probs=39.9
Q ss_pred cCCCCCCCceeeccccCcHHHHHHHhhhhcCCC-CCceEEEeCCcccCccccccccc
Q 040111 46 CKNPDPQNITLEVESSDTIDNVKAKIQDKKRIP-PPAEADLLKFPFFFFEEVLSFFW 101 (133)
Q Consensus 46 Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp-~~~q~L~~~gk~L~d~~tL~dy~ 101 (133)
|-..+|.+..+.|++++|+.+|-+.++.+.+.+ ++...|+=.-..+.-+++|.+|-
T Consensus 36 v~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE 92 (281)
T 4gmv_A 36 VHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHE 92 (281)
T ss_dssp EEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTS
T ss_pred EEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccch
Confidence 334568889999999999999999999988754 44455553344444456666664
No 243
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=63.12 E-value=10 Score=21.85 Aligned_cols=46 Identities=7% Similarity=0.029 Sum_probs=31.2
Q ss_pred CCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCc----cccccccc
Q 040111 50 DPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFF----EEVLSFFW 101 (133)
Q Consensus 50 ~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d----~~tL~dy~ 101 (133)
+|+. ++++...|+.+|.+.+ ++++....+..+|..... +..|++=+
T Consensus 6 Ng~~--~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~~~~~~~L~~gD 55 (66)
T 1f0z_A 6 NDQA--MQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPREQWAQHIVQDGD 55 (66)
T ss_dssp SSCE--ECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHHHHTTCCCCTTE
T ss_pred CCEE--EEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCchhcCCcCCCCCC
Confidence 4454 4556778999998876 567777777788887764 34566543
No 244
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=61.07 E-value=2.9 Score=26.02 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=22.4
Q ss_pred eEEEeCCEECCCCCCccccccc-cccccc
Q 040111 12 QRSIFAGKQLEDGRTLADYKIQ-ESTLHL 39 (133)
Q Consensus 12 Q~Li~~gk~L~D~~tL~~ygI~-~stl~L 39 (133)
-+..-.+..|.++.+|++|+|. |+.+.+
T Consensus 52 irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 52 IRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 4444557789999999999999 988764
No 245
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=59.95 E-value=6.2 Score=24.34 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=35.2
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADL 85 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~ 85 (133)
+.+..++++...++|.|..|+.+--.+.-++.|+.|+.-..+
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~V~ 45 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 45 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 445667888889999999999999999999999988755554
No 246
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=59.81 E-value=4.1 Score=24.55 Aligned_cols=42 Identities=2% Similarity=-0.019 Sum_probs=28.9
Q ss_pred eeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCcccccccc
Q 040111 55 TLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFEEVLSFF 100 (133)
Q Consensus 55 ~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~~tL~dy 100 (133)
.+++++..||.+|.+.+ ++++....+..+|+....+..|++=
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~~~L~dG 65 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLEDDEVKDG 65 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSSSCCCSS
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCCCCcCCC
Confidence 34566778999998765 4666666677777777665555554
No 247
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=59.69 E-value=12 Score=22.19 Aligned_cols=47 Identities=6% Similarity=0.050 Sum_probs=31.0
Q ss_pred ceeeccccCcHHHHHHHhhhhcC-----CCCCceEEEeCCcccCccccccccc
Q 040111 54 ITLEVESSDTIDNVKAKIQDKKR-----IPPPAEADLLKFPFFFFEEVLSFFW 101 (133)
Q Consensus 54 ~~l~V~~~~tV~~LK~~I~~~~g-----Ip~~~q~L~~~gk~L~d~~tL~dy~ 101 (133)
..++ ....||.+|.+.+..... ++.....+..+|+....+..|++=+
T Consensus 19 ~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~~~~l~~gD 70 (81)
T 1fm0_D 19 TEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSFDHPLTDGD 70 (81)
T ss_dssp EEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCTTCBCCTTC
T ss_pred EEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCCCCCCCCCC
Confidence 4455 567899999999876532 3333446777887776666676654
No 248
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=58.82 E-value=13 Score=31.51 Aligned_cols=58 Identities=17% Similarity=0.185 Sum_probs=40.9
Q ss_pred CCCceeeccccCcHHHHHHHhhhhc--CCC------CCceEEEe-CC---c-ccCcc-------------ccccccccEE
Q 040111 51 PQNITLEVESSDTIDNVKAKIQDKK--RIP------PPAEADLL-KF---P-FFFFE-------------EVLSFFWFVV 104 (133)
Q Consensus 51 g~~~~l~V~~~~tV~~LK~~I~~~~--gIp------~~~q~L~~-~g---k-~L~d~-------------~tL~dy~~~~ 104 (133)
.+.+++.|-..+||.++|++|-+.. |.| +++..|-+ .| + .|.|+ .||++|++++
T Consensus 246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 3557888889999999999999873 554 56677765 22 2 34441 4799999877
Q ss_pred eEEE
Q 040111 105 VGVI 108 (133)
Q Consensus 105 ~~~~ 108 (133)
.+++
T Consensus 326 ga~v 329 (627)
T 3ig3_A 326 GSLV 329 (627)
T ss_dssp TCEE
T ss_pred CceE
Confidence 6644
No 249
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=58.70 E-value=6.2 Score=29.75 Aligned_cols=57 Identities=5% Similarity=-0.153 Sum_probs=43.4
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCC-CceEEEeCC-----cccCcccccccc
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPP-PAEADLLKF-----PFFFFEEVLSFF 100 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~-~~q~L~~~g-----k~L~d~~tL~dy 100 (133)
+.|..++|....+++++.+|+.++-..|+++.|+.. +.--|.+.. ..|+.++++.+.
T Consensus 20 ~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q 82 (296)
T 3qij_A 20 CKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQ 82 (296)
T ss_dssp EEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHH
T ss_pred EEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHh
Confidence 778889999999999999999999999999999753 334555432 235556666654
No 250
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=58.65 E-value=4.7 Score=30.28 Aligned_cols=58 Identities=12% Similarity=-0.037 Sum_probs=37.9
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCC-CCceEEEeCCcccCccccccccc
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIP-PPAEADLLKFPFFFFEEVLSFFW 101 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp-~~~q~L~~~gk~L~d~~tL~dy~ 101 (133)
+.|-..+|.+..+.|++++|+.+|-+.+.++.... .....|+=.-..+.-+++|.|+-
T Consensus 11 vkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE 69 (256)
T 3hk0_A 11 VKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHE 69 (256)
T ss_dssp EEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTS
T ss_pred EEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccch
Confidence 34445678889999999999999999999987754 44444443344455566677663
No 251
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=58.34 E-value=9.4 Score=22.46 Aligned_cols=48 Identities=6% Similarity=-0.022 Sum_probs=31.2
Q ss_pred CceeeccccCcHHHHHHHhhhhcCCCCCce--EEEeCCcccCccccccccc
Q 040111 53 NITLEVESSDTIDNVKAKIQDKKRIPPPAE--ADLLKFPFFFFEEVLSFFW 101 (133)
Q Consensus 53 ~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q--~L~~~gk~L~d~~tL~dy~ 101 (133)
...++++...||.+|.+.+..... ..... .+..+|+....+..|++=+
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~~~L~~gD 66 (77)
T 2q5w_D 17 QEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKSDFIQPND 66 (77)
T ss_dssp EEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTTSEECTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCCCCcCCCC
Confidence 345677777899999999877642 01222 5667777776666666543
No 252
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=57.25 E-value=15 Score=20.99 Aligned_cols=45 Identities=16% Similarity=0.006 Sum_probs=30.1
Q ss_pred CCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCcc----ccccccc
Q 040111 50 DPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFE----EVLSFFW 101 (133)
Q Consensus 50 ~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~----~tL~dy~ 101 (133)
+|+.+ ++ ...|+.+|.+.+ ++++....+..+|.....+ ..|++=+
T Consensus 5 Ng~~~--~~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~~~~~~~L~dgD 53 (64)
T 2cu3_A 5 NGEPR--PL-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGLEVPDRPLRDGD 53 (64)
T ss_dssp TTEEE--CC-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGGGCCCCCCCTTC
T ss_pred CCEEE--Ec-CCCcHHHHHHHc----CCCCCcEEEEECCEECCccccCCcCCCCCC
Confidence 45544 44 568999998876 5666666777888777643 5566654
No 253
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=55.40 E-value=29 Score=21.49 Aligned_cols=49 Identities=8% Similarity=0.072 Sum_probs=33.0
Q ss_pred CceeeccccCcHHHHHHHhhhhcC-C----------CCCceEEEeCCcccCccccccccc
Q 040111 53 NITLEVESSDTIDNVKAKIQDKKR-I----------PPPAEADLLKFPFFFFEEVLSFFW 101 (133)
Q Consensus 53 ~~~l~V~~~~tV~~LK~~I~~~~g-I----------p~~~q~L~~~gk~L~d~~tL~dy~ 101 (133)
...++++...||.+|.+.+..... + ......+..+|+....+.+|++=+
T Consensus 28 ~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~~~~L~dGD 87 (98)
T 1vjk_A 28 EEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDEELKDGD 87 (98)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTCBCCTTC
T ss_pred eEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCCCCCCCCCC
Confidence 456777778899999999987641 1 123345667777776666666654
No 254
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=55.36 E-value=25 Score=21.18 Aligned_cols=50 Identities=8% Similarity=-0.015 Sum_probs=33.1
Q ss_pred CCceeeccccCcHHHHHHHhhhhcC-CC----C------CceEEEeCCcccCccccccccc
Q 040111 52 QNITLEVESSDTIDNVKAKIQDKKR-IP----P------PAEADLLKFPFFFFEEVLSFFW 101 (133)
Q Consensus 52 ~~~~l~V~~~~tV~~LK~~I~~~~g-Ip----~------~~q~L~~~gk~L~d~~tL~dy~ 101 (133)
....++++...||.+|.+.+..+.. +. . ....+.-+|+....+..|++=+
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~~~l~~gD 78 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALGEATAAGD 78 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTTSBCCTTC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCCcccCCCC
Confidence 3456777778899999999988752 11 0 1245666777776666666543
No 255
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=51.58 E-value=25 Score=22.98 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=36.1
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADL 85 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~ 85 (133)
|.+..++++...++|.+..|+.+.-.+.-+..|+-|+.-..+
T Consensus 21 ir~hLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 62 (107)
T 1rrb_A 21 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 62 (107)
T ss_dssp EEEECTTTCCEEEECCTTCBHHHHHHHHHHHHTCCTTTEEEE
T ss_pred EEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHceeE
Confidence 667788899999999999999999999999999987755444
No 256
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=51.25 E-value=31 Score=20.14 Aligned_cols=46 Identities=13% Similarity=0.062 Sum_probs=27.7
Q ss_pred eeeccccCcHHHHHHHhhhhcCCCC--CceEEEeCCcccC-ccccccccc
Q 040111 55 TLEVESSDTIDNVKAKIQDKKRIPP--PAEADLLKFPFFF-FEEVLSFFW 101 (133)
Q Consensus 55 ~l~V~~~~tV~~LK~~I~~~~gIp~--~~q~L~~~gk~L~-d~~tL~dy~ 101 (133)
.+++ ...||.+|.+.+....++.. ..-.+.-+|+... .+..|++=+
T Consensus 15 ~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~l~~gD 63 (74)
T 3rpf_C 15 NFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTPLKDGD 63 (74)
T ss_dssp CEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCCCCTTC
T ss_pred EEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcCCCCCC
Confidence 3566 66899999999987544322 3344555666633 345555543
No 257
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=50.48 E-value=37 Score=21.21 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=26.0
Q ss_pred CCCCceeeccccCcHHHHHHHhhhhcCCC
Q 040111 50 DPQNITLEVESSDTIDNVKAKIQDKKRIP 78 (133)
Q Consensus 50 ~g~~~~l~V~~~~tV~~LK~~I~~~~gIp 78 (133)
++..+.+.|+++-+..+|+.+|.++..+.
T Consensus 20 ~DDIiAIrvP~di~~~~L~dKi~~RLk~~ 48 (85)
T 1ip9_A 20 KDDIFALMLKGDTTYKELRSKIAPRIDTD 48 (85)
T ss_dssp TTCCEEEEECSCCCHHHHHHHHHHHHTSS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 35689999999999999999999999883
No 258
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=50.01 E-value=11 Score=24.23 Aligned_cols=42 Identities=14% Similarity=0.042 Sum_probs=36.1
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADL 85 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~ 85 (133)
+.+..++++...++|.+..|+.+.-.+..++.|+.|+.-..+
T Consensus 20 irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~R~L~pe~C~Vy 61 (95)
T 2l05_A 20 VRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVY 61 (95)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHHHTCCGGGEEEE
T ss_pred EEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHcEEE
Confidence 566678898999999999999999999999999987765554
No 259
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=46.29 E-value=17 Score=24.14 Aligned_cols=57 Identities=21% Similarity=0.217 Sum_probs=39.5
Q ss_pred CCCceeeccccCcHHHHHHHhhhhc--CCC------CCceEEEe-CCc----ccCcc-------------ccccccccEE
Q 040111 51 PQNITLEVESSDTIDNVKAKIQDKK--RIP------PPAEADLL-KFP----FFFFE-------------EVLSFFWFVV 104 (133)
Q Consensus 51 g~~~~l~V~~~~tV~~LK~~I~~~~--gIp------~~~q~L~~-~gk----~L~d~-------------~tL~dy~~~~ 104 (133)
.+.+++.|=..+||.++|++|-+.. |.| +++..|.+ .|. .|.|. .||++|++.+
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 4457788889999999999999874 555 45667776 332 24442 3688888875
Q ss_pred eEE
Q 040111 105 VGV 107 (133)
Q Consensus 105 ~~~ 107 (133)
.+.
T Consensus 106 gat 108 (117)
T 4e74_A 106 GSV 108 (117)
T ss_dssp TCE
T ss_pred CCE
Confidence 543
No 260
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=43.13 E-value=18 Score=23.21 Aligned_cols=42 Identities=14% Similarity=0.042 Sum_probs=35.9
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEE
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADL 85 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~ 85 (133)
+.+..++++...++|.+..|+.+--.+.-++.|+.|+.-..+
T Consensus 16 irvhLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 57 (96)
T 3ny5_A 16 VRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVY 57 (96)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCChHHeEEE
Confidence 666778888899999999999999999999999987755554
No 261
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=42.28 E-value=15 Score=27.55 Aligned_cols=57 Identities=5% Similarity=-0.177 Sum_probs=41.9
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCC-CceEEEe--CCc--ccCccccccccc
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPP-PAEADLL--KFP--FFFFEEVLSFFW 101 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~-~~q~L~~--~gk--~L~d~~tL~dy~ 101 (133)
+.|..++| +..+++++++|+.++-..|++..|+.- +.--|.| .|. .|+.++++.+..
T Consensus 25 ~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~ 86 (314)
T 1h4r_A 25 VRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHD 86 (314)
T ss_dssp EEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSS
T ss_pred EEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcC
Confidence 56778888 778999999999999999999999863 3334544 222 356666777754
No 262
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=42.13 E-value=25 Score=21.22 Aligned_cols=58 Identities=10% Similarity=-0.059 Sum_probs=38.6
Q ss_pred CCCCceeecc--ccCcHHHHHHHhhhhcCCC-CCceEEEeCCcccCcc----ccccccccEEeEEEEeCce
Q 040111 50 DPQNITLEVE--SSDTIDNVKAKIQDKKRIP-PPAEADLLKFPFFFFE----EVLSFFWFVVVGVIFCGCR 113 (133)
Q Consensus 50 ~g~~~~l~V~--~~~tV~~LK~~I~~~~gIp-~~~q~L~~~gk~L~d~----~tL~dy~~~~~~~~~~~~~ 113 (133)
+|+. .+++ ...|+.+|-+. .|++ +....+..+|..+.-+ ..|++=+-.++--.+.||.
T Consensus 6 NGe~--~e~~~~~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv~~VgGG~ 70 (78)
T 2k5p_A 6 NGKP--STVDGAESLNVTELLSA----LKVAQAEYVTVELNGEVLEREAFDATTVKDGDAVEFLYFMGGGK 70 (78)
T ss_dssp TTEE--EECSSCSCEEHHHHHHH----HTCSCTTTCCEEETTEECCTTHHHHCEECSSBCEEECCCCCCSC
T ss_pred CCEE--EEcCCCCCCcHHHHHHH----cCCCCCCcEEEEECCEECChHHcCcccCCCCCEEEEEeeecCCC
Confidence 4554 3444 56899998765 4777 7777788999887653 5677766555544555554
No 263
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=41.17 E-value=39 Score=19.99 Aligned_cols=56 Identities=11% Similarity=-0.083 Sum_probs=37.4
Q ss_pred CCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEeCCcccCcc----ccccccccEEeEEEEeCc
Q 040111 50 DPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLLKFPFFFFE----EVLSFFWFVVVGVIFCGC 112 (133)
Q Consensus 50 ~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~~gk~L~d~----~tL~dy~~~~~~~~~~~~ 112 (133)
+|+.. ++ +..|+.+|-+. .|+++....+..+|..+.-+ ..|++=+-..+--.+.||
T Consensus 6 NG~~~--e~-~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv~~VgGG 65 (73)
T 2kl0_A 6 NGEQR--EV-QSASVAALMTE----LDCTGGHFAVALNYDVVPRGKWDETPVTAGDEIEILTPRQGG 65 (73)
T ss_dssp TTEEE--CC-CCSBHHHHHHH----TTCCSSSCEEEESSSEECHHHHTTCBCCTTCEEEEECCCCCC
T ss_pred CCEEE--Ec-CCCcHHHHHHH----cCCCCCcEEEEECCEECChHHcCcccCCCCCEEEEEccccCC
Confidence 45543 44 56889998764 68888888888999887643 467776655444444554
No 264
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=41.16 E-value=28 Score=25.29 Aligned_cols=38 Identities=13% Similarity=0.076 Sum_probs=31.0
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCc
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPA 81 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~ 81 (133)
+.|-..+|.+..+.|++++|..++-+.+.++.+++.+.
T Consensus 37 v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~ 74 (291)
T 3tca_A 37 VKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNV 74 (291)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCT
T ss_pred EEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCC
Confidence 33445678888999999999999999999999876543
No 265
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=41.02 E-value=17 Score=30.28 Aligned_cols=58 Identities=3% Similarity=-0.122 Sum_probs=41.0
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCC-CceEEEeCC-----cccCcccccccccc
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPP-PAEADLLKF-----PFFFFEEVLSFFWF 102 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~-~~q~L~~~g-----k~L~d~~tL~dy~~ 102 (133)
+.|..++| ++.+.+++++|+.+|-..|+...|+.- +..-|.|.. ..|+.+.++.+.++
T Consensus 7 v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~ 70 (575)
T 2i1j_A 7 VRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDV 70 (575)
T ss_dssp EEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCB
T ss_pred EEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcc
Confidence 45667777 677999999999999999999999853 334455422 24555666666543
No 266
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=39.19 E-value=24 Score=22.98 Aligned_cols=58 Identities=19% Similarity=0.142 Sum_probs=39.1
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhc-CC-------CCCceEEEe---CCc--ccCcc-ccccccc
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKK-RI-------PPPAEADLL---KFP--FFFFE-EVLSFFW 101 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~-gI-------p~~~q~L~~---~gk--~L~d~-~tL~dy~ 101 (133)
+.+=.++|-.+++++..+.|+.++|+.+-++- .. .++...+.. .|. ++.|+ +.|.|..
T Consensus 22 v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~ 93 (108)
T 2v1y_A 22 VECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLR 93 (108)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSC
T ss_pred EEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecc
Confidence 33445788889999999999999999777663 22 355555553 122 25554 6787776
No 267
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=38.90 E-value=13 Score=27.61 Aligned_cols=57 Identities=5% Similarity=-0.080 Sum_probs=40.1
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCc-eEEEe---CCc--ccCccccccccc
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPA-EADLL---KFP--FFFFEEVLSFFW 101 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~-q~L~~---~gk--~L~d~~tL~dy~ 101 (133)
+.|..++| +..+++++++|+.++-+.|++..|+...+ --|.+ .|. .|+.++++.+.+
T Consensus 4 ~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~ 66 (294)
T 1ef1_A 4 VRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQD 66 (294)
T ss_dssp EEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSC
T ss_pred EEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhc
Confidence 44566777 57799999999999999999999985433 34544 222 355566776654
No 268
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=36.19 E-value=24 Score=22.06 Aligned_cols=31 Identities=10% Similarity=0.125 Sum_probs=22.6
Q ss_pred ceeecc-ccCcHHHHHHHhhhhcCCCCCceEE
Q 040111 54 ITLEVE-SSDTIDNVKAKIQDKKRIPPPAEAD 84 (133)
Q Consensus 54 ~~l~V~-~~~tV~~LK~~I~~~~gIp~~~q~L 84 (133)
.++..+ ...+|.+||..|.++.++-..+--|
T Consensus 20 ~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL 51 (86)
T 2c7h_A 20 DTVTFDGLHISLCDLKKQIMGREKLKAADCDL 51 (86)
T ss_dssp EEEEESSSEEEHHHHHHHHHHHHTCCTTTEEE
T ss_pred ceEEEcCCEEEHHHHHHHHHHHhCCCCCcccE
Confidence 455665 5689999999999998775444444
No 269
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=35.99 E-value=15 Score=30.21 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=27.5
Q ss_pred CCCCceeeccccCcHHHHHHHhhhhcCCCCC
Q 040111 50 DPQNITLEVESSDTIDNVKAKIQDKKRIPPP 80 (133)
Q Consensus 50 ~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~ 80 (133)
.|.++.+.|.+.+|..++|++|+++.|++..
T Consensus 449 ~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~~k 479 (530)
T 2ylm_A 449 FGIPFLLRIHQGEHFREVMKRIQSLLDIQEK 479 (530)
T ss_dssp EEEEEEEEEETTCCHHHHHHHHHHHHCCCHH
T ss_pred cCCCeEEEecCCCcHHHHHHHHHHHhCCCHh
Confidence 4777889999999999999999999999843
No 270
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=35.89 E-value=19 Score=29.39 Aligned_cols=43 Identities=12% Similarity=-0.019 Sum_probs=36.4
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCC--CceEEEe
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPP--PAEADLL 86 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~--~~q~L~~ 86 (133)
+.|..++|....+++++.+|+.++-..|+++.|+.. +.--|.+
T Consensus 219 ~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 219 STVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp EEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred eEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 667778999999999999999999999999999974 4455654
No 271
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=34.73 E-value=34 Score=26.48 Aligned_cols=45 Identities=9% Similarity=0.064 Sum_probs=34.5
Q ss_pred cccccCCCCCC----CceeeccccCcHHHHHHHhhhhcCCC-CCceEEEe
Q 040111 42 RADFCKNPDPQ----NITLEVESSDTIDNVKAKIQDKKRIP-PPAEADLL 86 (133)
Q Consensus 42 ~~i~Vk~~~g~----~~~l~V~~~~tV~~LK~~I~~~~gIp-~~~q~L~~ 86 (133)
+.+.|..++|+ ...+.+++++|++++=..|+++.||. .+.--|.+
T Consensus 8 ~~l~V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~ 57 (375)
T 2al6_A 8 KVFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRL 57 (375)
T ss_dssp EEECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEE
T ss_pred ceEEEEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEE
Confidence 33567777776 78899999999999999999999984 22334544
No 272
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.31 E-value=50 Score=20.80 Aligned_cols=50 Identities=18% Similarity=0.021 Sum_probs=34.4
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEEe--CCcccCccc
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADLL--KFPFFFFEE 95 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~--~gk~L~d~~ 95 (133)
..|+.. .++....|... +..+|+.+..++.+++...-+|+. .|..++|+.
T Consensus 12 fkV~~~-~Rs~k~GV~A~-sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEe 63 (91)
T 2eel_A 12 FRVSNH-DRSSRRGVMAS-SLQELISKTLDALVIATGLVTLVLEEDGTVVDTEE 63 (91)
T ss_dssp EEEECT-TSCCCEEEEES-SHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHH
T ss_pred EEEecC-CCCeEEeEEcC-CHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechh
Confidence 344432 33444555443 699999999999999766666664 699998874
No 273
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=33.99 E-value=79 Score=19.82 Aligned_cols=41 Identities=20% Similarity=0.112 Sum_probs=34.2
Q ss_pred CCceeeccccCcHHHHHHHhhhhcCCCCCceE-EEeCCcccC
Q 040111 52 QNITLEVESSDTIDNVKAKIQDKKRIPPPAEA-DLLKFPFFF 92 (133)
Q Consensus 52 ~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~-L~~~gk~L~ 92 (133)
....+.|++..+=.++|+.++..+++.+...+ +...|+.=.
T Consensus 28 n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~kR 69 (93)
T 3r8s_T 28 NTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKR 69 (93)
T ss_dssp SEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCBCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCceee
Confidence 46789999999999999999999999888776 556776544
No 274
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=33.98 E-value=46 Score=22.29 Aligned_cols=45 Identities=9% Similarity=0.014 Sum_probs=34.8
Q ss_pred eeccccCcHHHHHHHhhhhcCCCCCceEEE-eCCcccC-cccccccc
Q 040111 56 LEVESSDTIDNVKAKIQDKKRIPPPAEADL-LKFPFFF-FEEVLSFF 100 (133)
Q Consensus 56 l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~-~~gk~L~-d~~tL~dy 100 (133)
.-|+.+.||+++...|..+..+++++--.+ |-+..+. .+.++++.
T Consensus 57 flVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~l 103 (130)
T 2zjd_A 57 FLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEV 103 (130)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHH
T ss_pred EEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHH
Confidence 458899999999999999999999887766 7665554 35555544
No 275
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=31.22 E-value=32 Score=20.89 Aligned_cols=36 Identities=22% Similarity=0.104 Sum_probs=28.6
Q ss_pred CceeeccccCcHHHHHHHhhhhcCCC-----CCceEEEeCC
Q 040111 53 NITLEVESSDTIDNVKAKIQDKKRIP-----PPAEADLLKF 88 (133)
Q Consensus 53 ~~~l~V~~~~tV~~LK~~I~~~~gIp-----~~~q~L~~~g 88 (133)
.+.+-|+++.+-.+|..+|.++.+.+ ....+|-|..
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEc
Confidence 46788999999999999999999975 3555666654
No 276
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=30.86 E-value=70 Score=20.93 Aligned_cols=45 Identities=13% Similarity=0.107 Sum_probs=33.3
Q ss_pred eeccccCcHHHHHHHhhhhcCCCCCceEEEe-CCcccCcccccccc
Q 040111 56 LEVESSDTIDNVKAKIQDKKRIPPPAEADLL-KFPFFFFEEVLSFF 100 (133)
Q Consensus 56 l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~-~gk~L~d~~tL~dy 100 (133)
.-|+.+.||+++...|..+..+++++--.+| ++.....+.++++.
T Consensus 51 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~l 96 (118)
T 3rui_B 51 YLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAI 96 (118)
T ss_dssp EEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHH
Confidence 4588999999999999999999888766555 55433345565543
No 277
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=30.72 E-value=49 Score=21.01 Aligned_cols=53 Identities=8% Similarity=0.051 Sum_probs=34.3
Q ss_pred CCCceeeccccCcHHHHHHHhhhhcCCC-------CC----ceEEEeCC-cccCc------cccccccccE
Q 040111 51 PQNITLEVESSDTIDNVKAKIQDKKRIP-------PP----AEADLLKF-PFFFF------EEVLSFFWFV 103 (133)
Q Consensus 51 g~~~~l~V~~~~tV~~LK~~I~~~~gIp-------~~----~q~L~~~g-k~L~d------~~tL~dy~~~ 103 (133)
+....++++++.|..++-+.+.+...+. .. ...|+..+ ..|+. +++|.+.++.
T Consensus 4 ~~~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~ 74 (98)
T 1y8x_B 4 QLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLV 74 (98)
T ss_dssp -CCCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCC
T ss_pred CCcEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCC
Confidence 3456789999999999999999954322 12 45566555 24443 3567777643
No 278
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=30.38 E-value=70 Score=21.24 Aligned_cols=45 Identities=11% Similarity=0.022 Sum_probs=33.4
Q ss_pred eeccccCcHHHHHHHhhhhcCCCCCceEEEe-CCcccCcccccccc
Q 040111 56 LEVESSDTIDNVKAKIQDKKRIPPPAEADLL-KFPFFFFEEVLSFF 100 (133)
Q Consensus 56 l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~-~gk~L~d~~tL~dy 100 (133)
.-|+.+.||+++...|..+..++|++--.+| ++.....+.++++.
T Consensus 57 flVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~l 102 (125)
T 3m95_A 57 YLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSL 102 (125)
T ss_dssp EEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred EEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHH
Confidence 4588999999999999999999988866555 54433345666543
No 279
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=30.07 E-value=88 Score=18.46 Aligned_cols=46 Identities=4% Similarity=-0.133 Sum_probs=28.7
Q ss_pred eeccccCcHHHHHHHhhhhcC------C-----CCCceEEEeCCcccC----ccccccccc
Q 040111 56 LEVESSDTIDNVKAKIQDKKR------I-----PPPAEADLLKFPFFF----FEEVLSFFW 101 (133)
Q Consensus 56 l~V~~~~tV~~LK~~I~~~~g------I-----p~~~q~L~~~gk~L~----d~~tL~dy~ 101 (133)
++++...||.+|.+.+..+.. + ......+..+|+... .+..|++=+
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~~~~~l~~gD 79 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMKGLDTEIKDDD 79 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTCSSSCBCCTTC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccCCCCcCCCCCC
Confidence 455566899999999887642 1 113445667887765 344555543
No 280
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=30.07 E-value=72 Score=20.42 Aligned_cols=45 Identities=11% Similarity=0.038 Sum_probs=32.5
Q ss_pred eeccccCcHHHHHHHhhhhcCCCCCceEEEe-CCcccCcccccccc
Q 040111 56 LEVESSDTIDNVKAKIQDKKRIPPPAEADLL-KFPFFFFEEVLSFF 100 (133)
Q Consensus 56 l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~-~gk~L~d~~tL~dy 100 (133)
.-|+.+.|++++...|..+.++++++--.+| ++.....+.++++.
T Consensus 48 flVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 93 (110)
T 2r2q_A 48 YLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQL 93 (110)
T ss_dssp EEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred EEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHH
Confidence 4677899999999999999999888755444 55433445566554
No 281
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=29.78 E-value=40 Score=21.80 Aligned_cols=43 Identities=7% Similarity=0.059 Sum_probs=34.2
Q ss_pred CCCCCceeeccccCcHHHHHHHhhhhcCCCCCceEEE---eCCccc
Q 040111 49 PDPQNITLEVESSDTIDNVKAKIQDKKRIPPPAEADL---LKFPFF 91 (133)
Q Consensus 49 ~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~---~~gk~L 91 (133)
++....++.+..+.|+.+++..++++.+...+.+.|+ ++|-..
T Consensus 17 ~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~ 62 (104)
T 1wgy_A 17 TEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKH 62 (104)
T ss_dssp SSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCC
T ss_pred ccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEe
Confidence 3455677888899999999999999999877788887 555443
No 282
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=28.69 E-value=67 Score=21.08 Aligned_cols=45 Identities=7% Similarity=0.022 Sum_probs=33.8
Q ss_pred eeccccCcHHHHHHHhhhhcCCCCCceEEEe-CCcccCcccccccc
Q 040111 56 LEVESSDTIDNVKAKIQDKKRIPPPAEADLL-KFPFFFFEEVLSFF 100 (133)
Q Consensus 56 l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~-~gk~L~d~~tL~dy 100 (133)
.-|+.+.||+++...|..+..+++++--.+| ++.....+.++++.
T Consensus 52 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~l 97 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADI 97 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHH
Confidence 4688999999999999999999888755444 66644445666554
No 283
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=26.21 E-value=47 Score=22.25 Aligned_cols=35 Identities=31% Similarity=0.272 Sum_probs=26.0
Q ss_pred CCceeeccccCcHHHHHHHhhhhc----CCC----CCceEEEe
Q 040111 52 QNITLEVESSDTIDNVKAKIQDKK----RIP----PPAEADLL 86 (133)
Q Consensus 52 ~~~~l~V~~~~tV~~LK~~I~~~~----gIp----~~~q~L~~ 86 (133)
+.+++.|-..+||.++|++|-+.. |.| +++..|-|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEw 81 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLEL 81 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEE
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEE
Confidence 357788889999999999998762 665 44555655
No 284
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=25.62 E-value=25 Score=23.08 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=19.6
Q ss_pred EECCCCCCccccccc-ccccccccc
Q 040111 19 KQLEDGRTLADYKIQ-ESTLHLGWR 42 (133)
Q Consensus 19 k~L~D~~tL~~ygI~-~stl~L~~~ 42 (133)
+.|+-..||..|||+ ++.++...+
T Consensus 78 WLlkt~~tLDk~giqADa~L~ftp~ 102 (112)
T 2lgx_A 78 WLLKTHWTLDKYGIQADAKLQFTPQ 102 (112)
T ss_dssp EECCTTSCHHHHTCCTTCBBCBBC-
T ss_pred hhhcchhhHhhhceeccccceecCC
Confidence 357889999999999 999886554
No 285
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=25.10 E-value=1.1e+02 Score=20.19 Aligned_cols=43 Identities=12% Similarity=0.148 Sum_probs=32.7
Q ss_pred CCCCCceeeccccCcHHHHHHHhhhhcCCCCC------ceEEE---eCCccc
Q 040111 49 PDPQNITLEVESSDTIDNVKAKIQDKKRIPPP------AEADL---LKFPFF 91 (133)
Q Consensus 49 ~~g~~~~l~V~~~~tV~~LK~~I~~~~gIp~~------~q~L~---~~gk~L 91 (133)
++....++.+..+.|+.+++..++++.+..-+ .+.|+ ++|-..
T Consensus 17 ~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~ 68 (120)
T 2dhz_A 17 PDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKV 68 (120)
T ss_dssp TTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCE
T ss_pred ccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEe
Confidence 45566788889999999999999999887543 67776 555443
No 286
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=24.42 E-value=37 Score=28.65 Aligned_cols=43 Identities=16% Similarity=0.008 Sum_probs=36.5
Q ss_pred cccCCCCCCCceeeccccCcHHHHHHHhhhhcCC-CCCceEEEe
Q 040111 44 DFCKNPDPQNITLEVESSDTIDNVKAKIQDKKRI-PPPAEADLL 86 (133)
Q Consensus 44 i~Vk~~~g~~~~l~V~~~~tV~~LK~~I~~~~gI-p~~~q~L~~ 86 (133)
+.|..++|....+++++.+|+.++-..|+++.|+ ..+..-|.+
T Consensus 266 ~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 266 LPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp EEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred EEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 5677889999999999999999999999999996 445556665
No 287
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=24.31 E-value=94 Score=19.55 Aligned_cols=37 Identities=14% Similarity=-0.015 Sum_probs=31.5
Q ss_pred ceeeccccCcHHHHHHHhhhhcCCCCCceEE-EeCCcc
Q 040111 54 ITLEVESSDTIDNVKAKIQDKKRIPPPAEAD-LLKFPF 90 (133)
Q Consensus 54 ~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L-~~~gk~ 90 (133)
..+.|++..|=.++|+.++..+++.+...+- ...|+.
T Consensus 25 y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK~ 62 (95)
T 2zjr_Q 25 YSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKR 62 (95)
T ss_dssp CEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCCC
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCCcc
Confidence 8899999999999999999999998887764 456644
No 288
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=23.96 E-value=1.1e+02 Score=19.08 Aligned_cols=41 Identities=10% Similarity=-0.052 Sum_probs=33.5
Q ss_pred CCceeeccccCcHHHHHHHhhhhcCCCCCceE-EEeCCcccC
Q 040111 52 QNITLEVESSDTIDNVKAKIQDKKRIPPPAEA-DLLKFPFFF 92 (133)
Q Consensus 52 ~~~~l~V~~~~tV~~LK~~I~~~~gIp~~~q~-L~~~gk~L~ 92 (133)
....+.|++..+=.++|+.++..+++.+...+ +...|+.=+
T Consensus 22 n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK~kR 63 (92)
T 3tve_T 22 GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKR 63 (92)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCCEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCceee
Confidence 56789999999999999999999999877765 456666443
No 289
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=23.72 E-value=71 Score=19.87 Aligned_cols=46 Identities=13% Similarity=0.113 Sum_probs=34.8
Q ss_pred eeeccccCcHHHHHHHhhhhcCCCCCceEEEe-CCcccC-cccccccc
Q 040111 55 TLEVESSDTIDNVKAKIQDKKRIPPPAEADLL-KFPFFF-FEEVLSFF 100 (133)
Q Consensus 55 ~l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~-~gk~L~-d~~tL~dy 100 (133)
..-|+.+.|++++..-|..+..+++++--.+| ++..+. .+.++++.
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~L 70 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTL 70 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHH
Confidence 46788999999999999999999888766555 555443 35666554
No 290
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=22.54 E-value=78 Score=21.20 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=31.7
Q ss_pred ccCcHHHHHHHhhhhcCCC-------CCceEEEeCCcccCc-cccccccccEEeEEEE
Q 040111 60 SSDTIDNVKAKIQDKKRIP-------PPAEADLLKFPFFFF-EEVLSFFWFVVVGVIF 109 (133)
Q Consensus 60 ~~~tV~~LK~~I~~~~gIp-------~~~q~L~~~gk~L~d-~~tL~dy~~~~~~~~~ 109 (133)
...|..+|-..+.++.|.+ .++++|+|.--.=.+ +++|++.++...+++.
T Consensus 18 ~~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLt 75 (127)
T 3onh_A 18 NKMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIIL 75 (127)
T ss_dssp HHCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEE
T ss_pred cccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEE
Confidence 3468888877787777754 235666654322222 5799999987655443
No 291
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=22.30 E-value=82 Score=20.16 Aligned_cols=40 Identities=8% Similarity=0.027 Sum_probs=28.8
Q ss_pred eeeccccCcHHHHHHHhhhhcCCCCC--ceEEE--eCCcccCccc
Q 040111 55 TLEVESSDTIDNVKAKIQDKKRIPPP--AEADL--LKFPFFFFEE 95 (133)
Q Consensus 55 ~l~V~~~~tV~~LK~~I~~~~gIp~~--~q~L~--~~gk~L~d~~ 95 (133)
...|.. .+..+|+.+..++.+++.. .-+|+ ..|..++|+.
T Consensus 31 k~GV~A-~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEe 74 (100)
T 1f2r_I 31 QHGVAA-SSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDD 74 (100)
T ss_dssp EEEEEE-SSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSS
T ss_pred EEeEEc-CCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechh
Confidence 444544 4699999999999999653 34444 5799998763
No 292
>2kqs_B Death domain-associated protein 6; SUMO, SIM, DAXX, nucleus, phosphoprotein, UBL conjugation PA apoptosis, transcription, transcription regulation; NMR {Homo sapiens}
Probab=21.98 E-value=37 Score=16.39 Aligned_cols=15 Identities=27% Similarity=0.492 Sum_probs=11.2
Q ss_pred eecccccCccceeec
Q 040111 117 WNASLRFDPENVLWL 131 (133)
Q Consensus 117 ~~~~~~~~~~~~~~~ 131 (133)
...++.|||..|-.|
T Consensus 4 v~~~tqcdP~evivl 18 (26)
T 2kqs_B 4 TSVATQCDPEEIIVL 18 (26)
T ss_pred ccccccCCcceEEEc
Confidence 457888999887654
No 293
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=21.76 E-value=84 Score=20.39 Aligned_cols=45 Identities=13% Similarity=0.039 Sum_probs=32.6
Q ss_pred eeccccCcHHHHHHHhhhhcCCCCCceEEEe-CCcccCcccccccc
Q 040111 56 LEVESSDTIDNVKAKIQDKKRIPPPAEADLL-KFPFFFFEEVLSFF 100 (133)
Q Consensus 56 l~V~~~~tV~~LK~~I~~~~gIp~~~q~L~~-~gk~L~d~~tL~dy 100 (133)
.-|+.+.|++++...|..+..+++++-..+| ++.....+.++++.
T Consensus 49 flVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 94 (117)
T 1eo6_A 49 YLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQL 94 (117)
T ss_dssp EEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred EEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHH
Confidence 4577889999999999999999888755445 55433445666554
No 294
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=20.67 E-value=76 Score=16.76 Aligned_cols=16 Identities=19% Similarity=0.322 Sum_probs=12.3
Q ss_pred HHHHHHhhhhcCCCCC
Q 040111 65 DNVKAKIQDKKRIPPP 80 (133)
Q Consensus 65 ~~LK~~I~~~~gIp~~ 80 (133)
.+|-..+++++|+++.
T Consensus 19 ~eLvk~leekfGVsaa 34 (40)
T 1dd4_C 19 AELVKKLEDKFGVTAA 34 (40)
T ss_dssp HHHHHHHHHHTCCCSC
T ss_pred HHHHHHHHHHHCCCcc
Confidence 4666788899999864
Done!