BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040113
(887 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 195 bits (495), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 198/652 (30%), Positives = 281/652 (43%), Gaps = 114/652 (17%)
Query: 272 VSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQ 331
V + +L+ LD+S NN S +P + + +L+ LD+S NKLSG+F S I T+L+
Sbjct: 191 VDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF--SRAISTCTELK 247
Query: 332 SLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLIT-LDLSQNSYRG 390
L+ +SN+F G + L+SL+ L++ F+G IP L +T LDLS N + G
Sbjct: 248 LLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 305
Query: 391 TMELDFLLVSLKNXXXXXXXXXXXXXXTKVTSNTTSQKFTVVGLRSCNLIEFP-NFLKNQ 449
+ F + +S F+ E P + L
Sbjct: 306 AVPPFF-----------------GSCSLLESLALSSNNFSG---------ELPMDTLLKM 339
Query: 450 HHLMLLDLSSNRIHGKIPSWLLDPSTQXXXXXXXXXXXXTGFDQQLVVLPGGKRFLLTLD 509
L +LDLS N G++P L + S LLTLD
Sbjct: 340 RGLKVLDLSFNEFSGELPESLTNLSAS----------------------------LLTLD 371
Query: 510 LSSNNLQGPLPVP-----PSRTVNYL-VSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGL 563
LSSNN GP+ +P P T+ L + NN F G+IP L L L LS N LSG
Sbjct: 372 LSSNNFSGPI-LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 430
Query: 564 LPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKL 623
+P LGS S KL L L N G IP M L + L N G IP L NC+ L
Sbjct: 431 IPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 489
Query: 624 EFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRF 683
++ + +N++ P W+G L NL +L L +N F G I DC L +DL+ N F
Sbjct: 490 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC--RSLIWLDLNTNLF 547
Query: 684 TGKLPSKSFL--------------------------CWNAMKIVNTSDLK--YLQDVISP 715
G +P+ F C A ++ ++ L + +
Sbjct: 548 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 607
Query: 716 KEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGXXX 775
++ V S +N G +M D +S N G IP I ++
Sbjct: 608 NPCNITSRVYGGHTSPTFDNNGSMMFLD----------MSYNMLSGYIPKEIGSMPYLFI 657
Query: 776 XXXXXXXXXGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPI 835
G IP +G+L L LDLS+N G+IPQ + LT L ++S+N L+GPI
Sbjct: 658 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 717
Query: 836 PQGRQFATFDNSSFESNSGLCGRPLSRECESDEAPTNEDHSKGAEESIFRRI 887
P+ QF TF + F +N GLCG PL R C+ P+N D + S RR+
Sbjct: 718 PEMGQFETFPPAKFLNNPGLCGYPLPR-CD----PSNADGYAHHQRSHGRRL 764
Score = 112 bits (280), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 154/523 (29%), Positives = 219/523 (41%), Gaps = 77/523 (14%)
Query: 328 TQLQSLDFTSNKFSGELHA--SIGNLRSLEVLAIGR--CNFSGRIPSSLRNLTQLITLDL 383
L SLD + N SG + S+G+ L+ L + +F G++ L+ L L LDL
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLDL 155
Query: 384 SQNSYRGTMELDFLLVSLKNXXXXXXXXXXXXXXTKVTSNTTSQKFTVVGLRSCNLIEFP 443
S NS G + ++L S + +F V S N
Sbjct: 156 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDV--SSNNFSTGI 213
Query: 444 NFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQXXXXXXXXXXXXTGFDQQLVVLPGGKR 503
FL + L LD+S N++ G S + T+
Sbjct: 214 PFLGDCSALQHLDISGNKLSGDF-SRAISTCTE--------------------------- 245
Query: 504 FLLTLDLSSNNLQGPLPVPPSRTVNYL-VSNNSFIGEIPSWLC-KLDSLEILVLSHNNLS 561
L L++SSN GP+P P +++ YL ++ N F GEIP +L D+L L LS N+
Sbjct: 246 -LKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 304
Query: 562 GLLPRCLGSFSDKLSILDLRANNFFGTIP-NTFMKESRLGMIDLSHNLFQGRIPRSLINC 620
G +P GS L L L +NNF G +P +T +K L ++DLS N F G +P SL N
Sbjct: 305 GAVPPFFGS-CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 363
Query: 621 SK-LEFLDIGDNQIRD-IFPSWLGTLPN-LTVLILQSNKFYGIIREPRIDCGFSKLRIID 677
S L LD+ N I P+ N L L LQ+N F G I +C S+L +
Sbjct: 364 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC--SELVSLH 421
Query: 678 LSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWL--LSDEVATYDYSLKMNN 735
LS N +G +PS L L+D+ K WL L E+
Sbjct: 422 LSFNYLSGTIPSS------------LGSLSKLRDL---KLWLNMLEGEIP---------- 456
Query: 736 KGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLT 795
Q + Y K L ++IL N G IP+ ++N G IP +G L
Sbjct: 457 --QELMYVKT---LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 511
Query: 796 NLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQG 838
NL L LSNN+F G IP +L + L + +++ N G IP
Sbjct: 512 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 554
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 179/651 (27%), Positives = 264/651 (40%), Gaps = 97/651 (14%)
Query: 90 SWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEII 149
S G +CS + + LDLS + L G + + +SL L++LN++ N S +
Sbjct: 89 SVSGFKCSAS---LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 145
Query: 150 NLSRLSYLNLSHSSFFGQIPSEIXXXXXXXXXXXXXXXGYGLELQKPNFANLVEKLSNLE 209
L+ L L+LS +S G G K + V + NLE
Sbjct: 146 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG-----NKISGDVDVSRCVNLE 200
Query: 210 TLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQXXXXXXXXXXXXXXXXXXXXXX 269
LD+ + + IP L + S+L L + L G
Sbjct: 201 FLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFS--RAISTCTELKLLNISSNQFV 257
Query: 270 XPVSIGNLHSLKKLDLSINNLSGELPTSIQNLV-SLEELDLSFNKLSGEFPWSIVIGNFT 328
P+ L SL+ L L+ N +GE+P + +L LDLS N G P G+ +
Sbjct: 258 GPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP--PFFGSCS 315
Query: 329 QLQSLDFTSNKFSGELHA-SIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQ-LITLDLSQN 386
L+SL +SN FSGEL ++ +R L+VL + FSG +P SL NL+ L+TLDLS N
Sbjct: 316 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 375
Query: 387 SYRGTMELDFLLVSLKNXXXXXXXXXXXXXXTKVTSNTTSQKFTVVGLRSCNLIEFPNFL 446
++ G + L L + KN + FT + P L
Sbjct: 376 NFSGPI-LPNLCQNPKNTLQELYL--------------QNNGFTG---------KIPPTL 411
Query: 447 KNQHHLMLLDLSSNRIHGKIPSWLLDPSTQXXXXXXXXXXXXTGFDQQLVVLPGGKRFLL 506
N L+ L LS N + G IPS L S + Q+L+ + + L
Sbjct: 412 SNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYV----KTLE 466
Query: 507 TLDLSSNNLQGPLPVPPSRTVN---YLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGL 563
TL L N+L G +P S N +SNN GEIP W+ +L++L IL LS+N+ SG
Sbjct: 467 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 526
Query: 564 LPRCLGSFSDKLSILDLRANNFFGTIPNTFMKES-------------------------- 597
+P LG L LDL N F GTIP K+S
Sbjct: 527 IPAELGD-CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 585
Query: 598 -----------------RLGM---IDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIF 637
RL +++ ++ G + N + FLD+ N +
Sbjct: 586 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 645
Query: 638 PSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLP 688
P +G++P L +L L N G I + D L I+DLS+N+ G++P
Sbjct: 646 PKEIGSMPYLFILNLGHNDISGSIPDEVGD--LRGLNILDLSSNKLDGRIP 694
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 155/601 (25%), Positives = 244/601 (40%), Gaps = 62/601 (10%)
Query: 97 SENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSY 156
S+ G + L +S + + G ++ S + V+LE+L+++ N+F S+ IP + + S L +
Sbjct: 171 SDGCGELKHLAISGNKISGDVDVS----RCVNLEFLDVSSNNF-STGIPF-LGDCSALQH 224
Query: 157 LNLSHSSFFGQIPSEIXXXXXXXXXXXXXXXGYGLELQKPNFANLVEKL--SNLETLDLG 214
L++S + G I L + F + L +L+ L L
Sbjct: 225 LDISGNKLSGDFSRAISTCTELKL----------LNISSNQFVGPIPPLPLKSLQYLSLA 274
Query: 215 YVSIRSTIPHNLANL-SSLTFLSLHSCGLQGRIQXXXXXXXXXXXXXXXXXXXXXXXPV- 272
IP L+ +LT L L G + P+
Sbjct: 275 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 334
Query: 273 SIGNLHSLKKLDLSINNLSGELPTSIQNL-VSLEELDLSFNKLSGEFPWSIVIGNFTQLQ 331
++ + LK LDLS N SGELP S+ NL SL LDLS N SG ++ LQ
Sbjct: 335 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 394
Query: 332 SLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGT 391
L +N F+G++ ++ N L L + SG IPSSL +L++L L L N G
Sbjct: 395 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 454
Query: 392 MELDFLLVSLKNXXXXXXXXXXXXXXTKVTSNTTSQKFT-VVGLRSCNLIEFPNFLKNQH 450
+ + + V T T F + G E P+ L N
Sbjct: 455 IPQELMYVK--------------------TLETLILDFNDLTG-------EIPSGLSNCT 487
Query: 451 HLMLLDLSSNRIHGKIPSWLLDPSTQXXXXXXXXXXXXTGFDQQLVVLPGGKRFLLTLDL 510
+L + LS+NR+ G+IP W+ F + G R L+ LDL
Sbjct: 488 NLNWISLSNNRLTGEIPKWI-----GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 542
Query: 511 SSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNL---SGLLPRC 567
++N G +P + + +N FI K D ++ NL G+
Sbjct: 543 NTNLFNGTIPAAMFKQSGKIAAN--FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 600
Query: 568 LGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLD 627
L S + + ++ + + G TF + +D+S+N+ G IP+ + + L L+
Sbjct: 601 LNRLSTR-NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 659
Query: 628 IGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKL 687
+G N I P +G L L +L L SNK G R P+ + L IDLSNN +G +
Sbjct: 660 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDG--RIPQAMSALTMLTEIDLSNNNLSGPI 717
Query: 688 P 688
P
Sbjct: 718 P 718
Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 133/476 (27%), Positives = 192/476 (40%), Gaps = 113/476 (23%)
Query: 122 SLFKLVHLEWLNLAFNDFKSSEIPSEIINLSR-LSYLNLSHSSFFGQIPSEIXXXXXXXX 180
+L K+ L+ L+L+FN+F S E+P + NLS L L+LS ++F G I
Sbjct: 335 TLLKMRGLKVLDLSFNEF-SGELPESLTNLSASLLTLDLSSNNFSGPI------------ 381
Query: 181 XXXXXXXGYGLELQKPNFANLVEKLSN-LETLDLGYVSIRSTIPHNLANLSSLTFLSLHS 239
NL + N L+ L L IP L+N S L L L
Sbjct: 382 -----------------LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 424
Query: 240 CGLQGRIQXXXXXXXXXXXXXXXXXXXXXXXPVSIGNLHSLKKLDLSINNLSGELPTSIQ 299
L G I P S+G+L L+ L L +N L GE+P +
Sbjct: 425 NYLSGTI------------------------PSSLGSLSKLRDLKLWLNMLEGEIPQELM 460
Query: 300 NLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAI 359
+ +LE L L FN L+GE P + N T L + ++N+ +GE+ IG L +L +L +
Sbjct: 461 YVKTLETLILDFNDLTGEIPSGL--SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 518
Query: 360 GRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLK---NXXXXXXXXXXXXX 416
+FSG IP+ L + LI LDL+ N + GT+ S K N
Sbjct: 519 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 578
Query: 417 XTKVTSNTTSQKFTVVGLRS-----------CNLIEF-------PNFLKNQHHLMLLDLS 458
K + G+RS CN+ P F N +M LD+S
Sbjct: 579 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF-DNNGSMMFLDMS 637
Query: 459 SNRIHGKIPSWLLDPSTQXXXXXXXXXXXXTGFDQQLVVLPGGKRFLLTLDLSSNNLQGP 518
N + G IP + G +L L+L N++ G
Sbjct: 638 YNMLSGYIPKEI-----------------------------GSMPYLFILNLGHNDISGS 668
Query: 519 LP--VPPSRTVNYL-VSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSF 571
+P V R +N L +S+N G IP + L L + LS+NNLSG +P +G F
Sbjct: 669 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQF 723
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 101/249 (40%), Gaps = 22/249 (8%)
Query: 106 LDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFF 165
+ LSN+ L G I + +L +L L L+ N F S IP+E+ + L +L+L+ + F
Sbjct: 492 ISLSNNRLTGEI--PKWIGRLENLAILKLSNNSF-SGNIPAELGDCRSLIWLDLNTNLFN 548
Query: 166 GQIPSEIXXXXXXXXXXXXXXXGY------GLELQKPNFANLVE-------KLSNLETLD 212
G IP+ + Y G++ + NL+E +L+ L T +
Sbjct: 549 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 608
Query: 213 LGYVSIRSTIPHN---LANLSSLTFLSLHSCGLQGRIQXXXXXXXXXXXXXXXXXXXXXX 269
++ R H N S+ FL + L G I
Sbjct: 609 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 668
Query: 270 XPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQ 329
P +G+L L LDLS N L G +P ++ L L E+DLS N LSG P +G F
Sbjct: 669 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE---MGQFET 725
Query: 330 LQSLDFTSN 338
F +N
Sbjct: 726 FPPAKFLNN 734
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 192 bits (487), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 195/639 (30%), Positives = 276/639 (43%), Gaps = 114/639 (17%)
Query: 272 VSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQ 331
V + +L+ LD+S NN S +P + + +L+ LD+S NKLSG+F S I T+L+
Sbjct: 194 VDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF--SRAISTCTELK 250
Query: 332 SLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLIT-LDLSQNSYRG 390
L+ +SN+F G + L+SL+ L++ F+G IP L +T LDLS N + G
Sbjct: 251 LLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308
Query: 391 TMELDFLLVSLKNXXXXXXXXXXXXXXTKVTSNTTSQKFTVVGLRSCNLIEFP-NFLKNQ 449
+ F + +S F+ E P + L
Sbjct: 309 AVPPFF-----------------GSCSLLESLALSSNNFSG---------ELPMDTLLKM 342
Query: 450 HHLMLLDLSSNRIHGKIPSWLLDPSTQXXXXXXXXXXXXTGFDQQLVVLPGGKRFLLTLD 509
L +LDLS N G++P L + S LLTLD
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNLSAS----------------------------LLTLD 374
Query: 510 LSSNNLQGPLPVP-----PSRTVNYL-VSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGL 563
LSSNN GP+ +P P T+ L + NN F G+IP L L L LS N LSG
Sbjct: 375 LSSNNFSGPI-LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433
Query: 564 LPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKL 623
+P LGS S KL L L N G IP M L + L N G IP L NC+ L
Sbjct: 434 IPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492
Query: 624 EFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRF 683
++ + +N++ P W+G L NL +L L +N F G I DC L +DL+ N F
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC--RSLIWLDLNTNLF 550
Query: 684 TGKLPSKSFL--------------------------CWNAMKIVNTSDLK--YLQDVISP 715
G +P+ F C A ++ ++ L + +
Sbjct: 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610
Query: 716 KEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGXXX 775
++ V S +N G +M D +S N G IP I ++
Sbjct: 611 NPCNITSRVYGGHTSPTFDNNGSMMFLD----------MSYNMLSGYIPKEIGSMPYLFI 660
Query: 776 XXXXXXXXXGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPI 835
G IP +G+L L LDLS+N G+IPQ + LT L ++S+N L+GPI
Sbjct: 661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720
Query: 836 PQGRQFATFDNSSFESNSGLCGRPLSRECESDEAPTNED 874
P+ QF TF + F +N GLCG PL R C+ P+N D
Sbjct: 721 PEMGQFETFPPAKFLNNPGLCGYPLPR-CD----PSNAD 754
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 154/523 (29%), Positives = 220/523 (42%), Gaps = 77/523 (14%)
Query: 328 TQLQSLDFTSNKFSGELHA--SIGNLRSLEVLAIGR--CNFSGRIPSSLRNLTQLITLDL 383
L SLD + N SG + S+G+ L+ L + +F G++ L+ L L LDL
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLDL 158
Query: 384 SQNSYRGTMELDFLLVSLKNXXXXXXXXXXXXXXTKVTSNTTSQKFTVVGLRSCNLIEFP 443
S NS G + ++L S + +F V S N
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDV--SSNNFSTGI 216
Query: 444 NFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQXXXXXXXXXXXXTGFDQQLVVLPGGKR 503
FL + L LD+S N++ G S + T+
Sbjct: 217 PFLGDCSALQHLDISGNKLSGDF-SRAISTCTE--------------------------- 248
Query: 504 FLLTLDLSSNNLQGPLPVPPSRTVNYL-VSNNSFIGEIPSWLC-KLDSLEILVLSHNNLS 561
L L++SSN GP+P P +++ YL ++ N F GEIP +L D+L L LS N+
Sbjct: 249 -LKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307
Query: 562 GLLPRCLGSFSDKLSILDLRANNFFGTIP-NTFMKESRLGMIDLSHNLFQGRIPRSLINC 620
G +P GS S S+ L +NNF G +P +T +K L ++DLS N F G +P SL N
Sbjct: 308 GAVPPFFGSCSLLESLA-LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 366
Query: 621 SK-LEFLDIGDNQIRD-IFPSWLGTLPN-LTVLILQSNKFYGIIREPRIDCGFSKLRIID 677
S L LD+ N I P+ N L L LQ+N F G I +C S+L +
Sbjct: 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC--SELVSLH 424
Query: 678 LSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWL--LSDEVATYDYSLKMNN 735
LS N +G +PS L L+D+ K WL L E+
Sbjct: 425 LSFNYLSGTIPSS------------LGSLSKLRDL---KLWLNMLEGEIP---------- 459
Query: 736 KGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLT 795
Q + Y K L ++IL N G IP+ ++N G IP +G L
Sbjct: 460 --QELMYVKT---LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514
Query: 796 NLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQG 838
NL L LSNN+F G IP +L + L + +++ N G IP
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 178/651 (27%), Positives = 262/651 (40%), Gaps = 97/651 (14%)
Query: 90 SWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEII 149
S G +CS + LDLS + L G + + +SL L++LN++ N S +
Sbjct: 92 SVSGFKCS---ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148
Query: 150 NLSRLSYLNLSHSSFFGQIPSEIXXXXXXXXXXXXXXXGYGLELQKPNFANLVEKLSNLE 209
L+ L L+LS +S G G + V + NLE
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-----VSRCVNLE 203
Query: 210 TLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQXXXXXXXXXXXXXXXXXXXXXX 269
LD+ + + IP L + S+L L + L G
Sbjct: 204 FLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFS--RAISTCTELKLLNISSNQFV 260
Query: 270 XPVSIGNLHSLKKLDLSINNLSGELPTSIQNLV-SLEELDLSFNKLSGEFPWSIVIGNFT 328
P+ L SL+ L L+ N +GE+P + +L LDLS N G P G+ +
Sbjct: 261 GPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP--PFFGSCS 318
Query: 329 QLQSLDFTSNKFSGELHA-SIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQ-LITLDLSQN 386
L+SL +SN FSGEL ++ +R L+VL + FSG +P SL NL+ L+TLDLS N
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Query: 387 SYRGTMELDFLLVSLKNXXXXXXXXXXXXXXTKVTSNTTSQKFTVVGLRSCNLIEFPNFL 446
++ G + L L + KN + FT + P L
Sbjct: 379 NFSGPI-LPNLCQNPKNTLQELYL--------------QNNGFTG---------KIPPTL 414
Query: 447 KNQHHLMLLDLSSNRIHGKIPSWLLDPSTQXXXXXXXXXXXXTGFDQQLVVLPGGKRFLL 506
N L+ L LS N + G IPS L S + Q+L+ + + L
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYV----KTLE 469
Query: 507 TLDLSSNNLQGPLPVPPSRTVN---YLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGL 563
TL L N+L G +P S N +SNN GEIP W+ +L++L IL LS+N+ SG
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529
Query: 564 LPRCLGSFSDKLSILDLRANNFFGTIPNTFMKES-------------------------- 597
+P LG L LDL N F GTIP K+S
Sbjct: 530 IPAELGD-CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 588
Query: 598 -----------------RLGM---IDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIF 637
RL +++ ++ G + N + FLD+ N +
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648
Query: 638 PSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLP 688
P +G++P L +L L N G I + D L I+DLS+N+ G++P
Sbjct: 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGD--LRGLNILDLSSNKLDGRIP 697
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 155/601 (25%), Positives = 244/601 (40%), Gaps = 62/601 (10%)
Query: 97 SENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSY 156
S+ G + L +S + + G ++ S + V+LE+L+++ N+F S+ IP + + S L +
Sbjct: 174 SDGCGELKHLAISGNKISGDVDVS----RCVNLEFLDVSSNNF-STGIPF-LGDCSALQH 227
Query: 157 LNLSHSSFFGQIPSEIXXXXXXXXXXXXXXXGYGLELQKPNFANLVEKL--SNLETLDLG 214
L++S + G I L + F + L +L+ L L
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKL----------LNISSNQFVGPIPPLPLKSLQYLSLA 277
Query: 215 YVSIRSTIPHNLANL-SSLTFLSLHSCGLQGRIQXXXXXXXXXXXXXXXXXXXXXXXPV- 272
IP L+ +LT L L G + P+
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337
Query: 273 SIGNLHSLKKLDLSINNLSGELPTSIQNL-VSLEELDLSFNKLSGEFPWSIVIGNFTQLQ 331
++ + LK LDLS N SGELP S+ NL SL LDLS N SG ++ LQ
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397
Query: 332 SLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGT 391
L +N F+G++ ++ N L L + SG IPSSL +L++L L L N G
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457
Query: 392 MELDFLLVSLKNXXXXXXXXXXXXXXTKVTSNTTSQKFT-VVGLRSCNLIEFPNFLKNQH 450
+ + + V T T F + G E P+ L N
Sbjct: 458 IPQELMYVK--------------------TLETLILDFNDLTG-------EIPSGLSNCT 490
Query: 451 HLMLLDLSSNRIHGKIPSWLLDPSTQXXXXXXXXXXXXTGFDQQLVVLPGGKRFLLTLDL 510
+L + LS+NR+ G+IP W+ F + G R L+ LDL
Sbjct: 491 NLNWISLSNNRLTGEIPKWI-----GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545
Query: 511 SSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNL---SGLLPRC 567
++N G +P + + +N FI K D ++ NL G+
Sbjct: 546 NTNLFNGTIPAAMFKQSGKIAAN--FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 603
Query: 568 LGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLD 627
L S + + ++ + + G TF + +D+S+N+ G IP+ + + L L+
Sbjct: 604 LNRLSTR-NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662
Query: 628 IGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKL 687
+G N I P +G L L +L L SNK G R P+ + L IDLSNN +G +
Sbjct: 663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDG--RIPQAMSALTMLTEIDLSNNNLSGPI 720
Query: 688 P 688
P
Sbjct: 721 P 721
Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 133/476 (27%), Positives = 192/476 (40%), Gaps = 113/476 (23%)
Query: 122 SLFKLVHLEWLNLAFNDFKSSEIPSEIINLSR-LSYLNLSHSSFFGQIPSEIXXXXXXXX 180
+L K+ L+ L+L+FN+F S E+P + NLS L L+LS ++F G I
Sbjct: 338 TLLKMRGLKVLDLSFNEF-SGELPESLTNLSASLLTLDLSSNNFSGPI------------ 384
Query: 181 XXXXXXXGYGLELQKPNFANLVEKLSN-LETLDLGYVSIRSTIPHNLANLSSLTFLSLHS 239
NL + N L+ L L IP L+N S L L L
Sbjct: 385 -----------------LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427
Query: 240 CGLQGRIQXXXXXXXXXXXXXXXXXXXXXXXPVSIGNLHSLKKLDLSINNLSGELPTSIQ 299
L G I P S+G+L L+ L L +N L GE+P +
Sbjct: 428 NYLSGTI------------------------PSSLGSLSKLRDLKLWLNMLEGEIPQELM 463
Query: 300 NLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAI 359
+ +LE L L FN L+GE P + N T L + ++N+ +GE+ IG L +L +L +
Sbjct: 464 YVKTLETLILDFNDLTGEIPSGL--SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521
Query: 360 GRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLK---NXXXXXXXXXXXXX 416
+FSG IP+ L + LI LDL+ N + GT+ S K N
Sbjct: 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 581
Query: 417 XTKVTSNTTSQKFTVVGLRS-----------CNLIEF-------PNFLKNQHHLMLLDLS 458
K + G+RS CN+ P F N +M LD+S
Sbjct: 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF-DNNGSMMFLDMS 640
Query: 459 SNRIHGKIPSWLLDPSTQXXXXXXXXXXXXTGFDQQLVVLPGGKRFLLTLDLSSNNLQGP 518
N + G IP + G +L L+L N++ G
Sbjct: 641 YNMLSGYIPKEI-----------------------------GSMPYLFILNLGHNDISGS 671
Query: 519 LP--VPPSRTVNYL-VSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSF 571
+P V R +N L +S+N G IP + L L + LS+NNLSG +P +G F
Sbjct: 672 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQF 726
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 101/249 (40%), Gaps = 22/249 (8%)
Query: 106 LDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFF 165
+ LSN+ L G I + +L +L L L+ N F S IP+E+ + L +L+L+ + F
Sbjct: 495 ISLSNNRLTGEI--PKWIGRLENLAILKLSNNSF-SGNIPAELGDCRSLIWLDLNTNLFN 551
Query: 166 GQIPSEIXXXXXXXXXXXXXXXGY------GLELQKPNFANLVE-------KLSNLETLD 212
G IP+ + Y G++ + NL+E +L+ L T +
Sbjct: 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611
Query: 213 LGYVSIRSTIPHN---LANLSSLTFLSLHSCGLQGRIQXXXXXXXXXXXXXXXXXXXXXX 269
++ R H N S+ FL + L G I
Sbjct: 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 671
Query: 270 XPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQ 329
P +G+L L LDLS N L G +P ++ L L E+DLS N LSG P +G F
Sbjct: 672 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE---MGQFET 728
Query: 330 LQSLDFTSN 338
F +N
Sbjct: 729 FPPAKFLNN 737
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 89/316 (28%), Positives = 116/316 (36%), Gaps = 54/316 (17%)
Query: 570 SFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSH-NLFQGR-IPRSLINCSKLEFLD 627
+ S L D + G + +T + R+ +DLS NL + IP SL N L FL
Sbjct: 23 TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLY 82
Query: 628 IGD-NQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGK 686
IG N + P + L L L + G I P L +D S N +G
Sbjct: 83 IGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI--PDFLSQIKTLVTLDFSYNALSGT 140
Query: 687 LPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVP 746
LP N + I T D + I +Y
Sbjct: 141 LPPSISSLPNLVGI--TFDGNRISGAIPD-------------------------SYGSFS 173
Query: 747 DILTSIILSSNRFDGMIPTSIANLK-------------------GXXXXXXXXXXXXGHI 787
+ TS+ +S NR G IP + ANL G +
Sbjct: 174 KLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233
Query: 788 PSCLGNL---TNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATF 844
LG + NL LDL NN G +PQ L +L FL NVS N L G IPQG F
Sbjct: 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF 293
Query: 845 DNSSFESNSGLCGRPL 860
D S++ +N LCG PL
Sbjct: 294 DVSAYANNKCLCGSPL 309
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 89/362 (24%), Positives = 146/362 (40%), Gaps = 83/362 (22%)
Query: 36 RLCHDDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKPEEGNIDCC--SWDG 93
LC+ + ALLQ K+ L G +SW P DCC +W G
Sbjct: 1 ELCNPQDKQALLQIKKDL-----------------GNPTTLSSWLPTT---DCCNRTWLG 40
Query: 94 VECSENTG--HVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINL 151
V C +T V LDLS L SSL L +L +L + + IP I L
Sbjct: 41 VLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL 100
Query: 152 SRLSYLNLSHSSFFGQIPSEIXXXXXXXXXXXXXXXGYGLELQKPNFANLVEKLSNLETL 211
++L YL ++H++ G IP + + ++ L TL
Sbjct: 101 TQLHYLYITHTNVSGAIP------------------------------DFLSQIKTLVTL 130
Query: 212 DLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQXXXXXXXXXXXXXXXXXXXXXXXP 271
D Y ++ T+P ++++L +L ++ + G I P
Sbjct: 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI------------------------P 166
Query: 272 VSIGNLHSL-KKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQL 330
S G+ L + +S N L+G++P + NL +L +DLS N L G+ S++ G+
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGD--ASVLFGSDKNT 223
Query: 331 QSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRG 390
Q + N + +L +G ++L L + G +P L L L +L++S N+ G
Sbjct: 224 QKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Query: 391 TM 392
+
Sbjct: 283 EI 284
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 87/201 (43%), Gaps = 31/201 (15%)
Query: 271 PVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQL 330
P +I L L L ++ N+SG +P + + +L LD S+N LSG P S I + L
Sbjct: 94 PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS--ISSLPNL 151
Query: 331 QSLDFTSNKFSGELHASIGNLRSL-EVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYR 389
+ F N+ SG + S G+ L + I R +G+IP + NL L +DLS+N
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLE 210
Query: 390 GTMELDFLLVSLKNXXXXXXXXXXXXXXTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQ 449
G + L S KN + N+ + VGL
Sbjct: 211 G--DASVLFGSDKN-----------TQKIHLAKNSLAFDLGKVGL--------------S 243
Query: 450 HHLMLLDLSSNRIHGKIPSWL 470
+L LDL +NRI+G +P L
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGL 264
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 82/209 (39%), Gaps = 30/209 (14%)
Query: 508 LDLSSNNLQGPLPVP------PSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLS 561
LDLS NL P P+P P Y+ N+ +G IP + KL L L ++H N+S
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 562 GLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCS 621
G +P L L LD N GT+P + L I N G IP S + S
Sbjct: 115 GAIPDFLSQIK-TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173
Query: 622 KL-EFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGII--------REPRI------ 666
KL + I N++ P L NL + L N G +I
Sbjct: 174 KLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232
Query: 667 ------DCGFSK-LRIIDLSNNRFTGKLP 688
G SK L +DL NNR G LP
Sbjct: 233 LAFDLGKVGLSKNLNGLDLRNNRIYGTLP 261
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 91/204 (44%), Gaps = 33/204 (16%)
Query: 513 NNLQGPLPVPPSR--TVNYL-VSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLP---- 565
NNL GP+P ++ ++YL +++ + G IP +L ++ +L L S+N LSG LP
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 566 --------------------RCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLS 605
GSFS + + + N G IP TF + L +DLS
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205
Query: 606 HNLFQGRIPRSLINCSKLEFLDIGDNQIR-DIFPSWLGTLPNLTVLILQSNKFYGIIREP 664
N+ +G + + + + N + D+ +G NL L L++N+ YG + +
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL--GKVGLSKNLNGLDLRNNRIYGTLPQG 263
Query: 665 RIDCGFSKLRIIDLSNNRFTGKLP 688
F L +++S N G++P
Sbjct: 264 LTQLKF--LHSLNVSFNNLCGEIP 285
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 98/266 (36%), Gaps = 34/266 (12%)
Query: 304 LEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTS-NKFSGELHASIGNLRSLEVLAIGRC 362
+ LDLS L +P + N L L N G + +I L L L I
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 363 NFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNXXXXXXXXXXXXXXTKVTS 422
N SG IP L + L+TLD S N+ GT+ + SL N +
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS--ISSLPNLVGITFDGNRISGAIPDSY 169
Query: 423 NTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQXXXXXX 482
+ S+ FT + +S NR+ GKI P T
Sbjct: 170 GSFSKLFTS-----------------------MTISRNRLTGKI------PPTFANLNLA 200
Query: 483 XXXXXXTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPL-PVPPSRTVNYL-VSNNSFIGEI 540
+ VL G + + L+ N+L L V S+ +N L + NN G +
Sbjct: 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTL 260
Query: 541 PSWLCKLDSLEILVLSHNNLSGLLPR 566
P L +L L L +S NNL G +P+
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 74/184 (40%), Gaps = 22/184 (11%)
Query: 441 EFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQXXXXXXXXXXXXTGFDQQLV--VL 498
P+FL L+ LD S N + G +P PS FD + +
Sbjct: 116 AIPDFLSQIKTLVTLDFSYNALSGTLP-----PSISSLPNLVGIT-----FDGNRISGAI 165
Query: 499 PGG----KRFLLTLDLSSNNLQGPLPVPPSRTVNYL---VSNNSFIGEIPSWLCKLDSLE 551
P + ++ +S N L G +P P +N +S N G+ + +
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIP-PTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224
Query: 552 ILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQG 611
+ L+ N+L+ L + S L+ LDLR N +GT+P + L +++S N G
Sbjct: 225 KIHLAKNSLAFDLGKV--GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Query: 612 RIPR 615
IP+
Sbjct: 283 EIPQ 286
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 93/394 (23%), Positives = 138/394 (35%), Gaps = 58/394 (14%)
Query: 283 LDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGN-FTQLQSL---DFTSN 338
+DLS+N+++ TS L DL F K+ + P ++ N F L SL N
Sbjct: 35 VDLSLNSIAELNETSFSRLQ-----DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 339 KFSGELHASIGNLRSLEVLAIGRCNFSGRIPSS--LRNLTQLITLDLSQNSYRGTMELDF 396
+F + L +LEVL + +CN G + S + LT L L L N+ + F
Sbjct: 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Query: 397 LLVSLKNXXXXXXXXXXXXXXTKVTSNTTSQKFTVVGLRSCNLIEFPNF----------L 446
L + + N + FT++ L S L + +
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209
Query: 447 KNQHHLMLLDLSSNRIHGKIPSWLLDPSTQXXXXXXXXXXXXTGFDQQLVVLPGGKRFLL 506
KN + LDLS N + D G Q ++L + +
Sbjct: 210 KNTS-ITTLDLSGNGFKESMAKRFFDA--------------IAGTKIQSLILSNS--YNM 252
Query: 507 TLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPR 566
N + P N +F G S + D LS + + LL
Sbjct: 253 GSSFGHTNFKDP-------------DNFTFKGLEASGVKTCD------LSKSKIFALLKS 293
Query: 567 CLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFL 626
F+D L L L N N F + L ++LS N R N KLE L
Sbjct: 294 VFSHFTD-LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVL 352
Query: 627 DIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGI 660
D+ N IR + LPNL L L +N+ +
Sbjct: 353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 80/211 (37%), Gaps = 15/211 (7%)
Query: 547 LDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSH 606
L L L LSHN L L LG L++LD+ N L + L
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 607 NLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRI 666
N + P L KLE L + +NQ+ ++ L L NL L+LQ N Y I P+
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI---PKG 190
Query: 667 DCGFSKLRIIDLSNNRFTGKLPSKSFLCW---NAMKIV---NTSDLKYLQDVISPKEWLL 720
G L L N + F W NA + D+K + ++ +
Sbjct: 191 FFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVKAMTSNVASVQCDN 250
Query: 721 SDEVATYDYSLK----MNNKGQIMTYDKVPD 747
SD+ Y Y K + ++G YD P+
Sbjct: 251 SDKFPVYKYPGKGCPTLGDEGDTDLYDYYPE 281
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
Query: 275 GNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLD 334
G L L LDLS N L LP Q L +L LD+SFN+L+ P + G +LQ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LPLGALRG-LGELQELY 130
Query: 335 FTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRN-LTQLITLDLSQNS 387
N+ + LE L++ + +P+ L N L L TL L +NS
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENS 183
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
Query: 547 LDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSH 606
L L L LSHN L L LG L++LD+ N L + L
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 607 NLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIR 662
N + P L KLE L + +NQ+ ++ L L NL L+LQ N Y I +
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
Query: 275 GNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLD 334
G L L LDLS N L LP Q L +L LD+SFN+L+ P + G +LQ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LPLGALRG-LGELQELY 130
Query: 335 FTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRN-LTQLITLDLSQNS 387
N+ + LE L++ + +P+ L N L L TL L +NS
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENS 183
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 80/211 (37%), Gaps = 15/211 (7%)
Query: 547 LDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSH 606
L L L LSHN L L LG L++LD+ N L + L
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 607 NLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRI 666
N + P L KLE L + +NQ+ ++ L L NL L+LQ N Y I P+
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI---PKG 190
Query: 667 DCGFSKLRIIDLSNNRFTGKLPSKSFLCW---NAMKIV---NTSDLKYLQDVISPKEWLL 720
G L L N + F W NA + D+K + ++ +
Sbjct: 191 FFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVKAVTSNVASVQCDN 250
Query: 721 SDEVATYDYSLK----MNNKGQIMTYDKVPD 747
SD+ Y Y K + ++G YD P+
Sbjct: 251 SDKFPVYKYPGKGCPTLGDEGDTDLYDYYPE 281
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
Query: 275 GNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLD 334
G L L LDLS N L LP Q L +L LD+SFN+L+ P + G +LQ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LPLGALRG-LGELQELY 130
Query: 335 FTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRN-LTQLITLDLSQNS 387
N+ + LE L++ + +P+ L N L L TL L +NS
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENS 183
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
Query: 547 LDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSH 606
L L L LSHN L L LG L++LD+ N L + L
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 607 NLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIR 662
N + P L KLE L + +NQ+ ++ L L NL L+LQ N Y I +
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
Query: 275 GNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLD 334
G L L LDLS N L LP Q L +L LD+SFN+L+ P + G +LQ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LPLGALRG-LGELQELY 130
Query: 335 FTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRN-LTQLITLDLSQNS 387
N+ + LE L++ + +P+ L N L L TL L +NS
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENS 183
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 547 LDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSH 606
L+ E+ +S + L G LP L L+L+ N G PN F S + + L
Sbjct: 36 LNDNELGRISSDGLFGRLPH--------LVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87
Query: 607 NLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKF 657
N + + + +L+ L++ DNQI + P L +LT L L SN F
Sbjct: 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 275 GNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLD 334
G L L KL+L N L+G P + + ++EL L NK+ E + +G QL++L+
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLG-LHQLKTLN 108
Query: 335 FTSNKFSGELHASIGNLRSLEVLAIG 360
N+ S + S +L SL L +
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNLA 134
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 98/251 (39%), Gaps = 74/251 (29%)
Query: 88 CCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSE 147
CCS+ + T + LDLS G+I S++ L L+ L+ + K S
Sbjct: 362 CCSYSDL----GTNSLRHLDLS---FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSA 414
Query: 148 IINLSRLSYLNLSHSSFFGQIPSEIXXXXXXXXXXXXXXXGYGLELQKPNFANLVEKLSN 207
++L +L YL++S+++ K +F + L++
Sbjct: 415 FLSLEKLLYLDISYTN------------------------------TKIDFDGIFLGLTS 444
Query: 208 LETLDLGYVSIR-STIPHNLANLSSLTFLSLHSCGLQGRIQXXXXXXXXXXXXXXXXXXX 266
L TL + S + +T+ + AN ++LTFL L C L+
Sbjct: 445 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE----------------------- 481
Query: 267 XXXXPVSIG---NLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSG------E 317
+S G LH L+ L++S NNL + L SL LD SFN++
Sbjct: 482 ----QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQH 537
Query: 318 FPWSIVIGNFT 328
FP S+ N T
Sbjct: 538 FPKSLAFFNLT 548
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Query: 273 SIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQS 332
S N L+ LDLS + + L L L L+ N + P S T L++
Sbjct: 46 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF--SGLTSLEN 103
Query: 333 LDFTSNKFSGELHASIGNLRSLEVLAIGRCNF--SGRIPSSLRNLTQLITLDLSQN 386
L K + IG L +L+ L + NF S ++P+ NLT L+ +DLS N
Sbjct: 104 LVAVETKLASLESFPIGQLITLKKLNVAH-NFIHSCKLPAYFSNLTNLVHVDLSYN 158
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 98/251 (39%), Gaps = 74/251 (29%)
Query: 88 CCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSE 147
CCS+ + T + LDLS G+I S++ L L+ L+ + K S
Sbjct: 367 CCSYSDL----GTNSLRHLDLS---FNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSA 419
Query: 148 IINLSRLSYLNLSHSSFFGQIPSEIXXXXXXXXXXXXXXXGYGLELQKPNFANLVEKLSN 207
++L +L YL++S+++ K +F + L++
Sbjct: 420 FLSLEKLLYLDISYTN------------------------------TKIDFDGIFLGLTS 449
Query: 208 LETLDLGYVSIR-STIPHNLANLSSLTFLSLHSCGLQGRIQXXXXXXXXXXXXXXXXXXX 266
L TL + S + +T+ + AN ++LTFL L C L+
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE----------------------- 486
Query: 267 XXXXPVSIG---NLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSG------E 317
+S G LH L+ L++S NNL + L SL LD SFN++
Sbjct: 487 ----QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQH 542
Query: 318 FPWSIVIGNFT 328
FP S+ N T
Sbjct: 543 FPKSLAFFNLT 553
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Query: 273 SIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQS 332
S N L+ LDLS + + L L L L+ N + P S T L++
Sbjct: 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF--SGLTSLEN 108
Query: 333 LDFTSNKFSGELHASIGNLRSLEVLAIGRCNF--SGRIPSSLRNLTQLITLDLSQN 386
L K + IG L +L+ L + NF S ++P+ NLT L+ +DLS N
Sbjct: 109 LVAVETKLASLESFPIGQLITLKKLNVAH-NFIHSCKLPAYFSNLTNLVHVDLSYN 163
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 79/211 (37%), Gaps = 15/211 (7%)
Query: 547 LDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSH 606
L L L LSHN L L LG L++LD+ N L + L
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 607 NLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRI 666
N + P L KLE L + +N + ++ L L NL L+LQ N Y I P+
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTI---PKG 190
Query: 667 DCGFSKLRIIDLSNNRFTGKLPSKSFLCW---NAMKIV---NTSDLKYLQDVISPKEWLL 720
G L L N + F W NA + D+K + ++ +
Sbjct: 191 FFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVKAMTSNVASVQCDN 250
Query: 721 SDEVATYDYSLK----MNNKGQIMTYDKVPD 747
SD+ Y Y K + ++G YD P+
Sbjct: 251 SDKFPVYKYPGKGCPTLGDEGDTDLYDYYPE 281
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 275 GNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLD 334
G L L LDLS N L LP Q L +L LD+SFN+L+ P + G +LQ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LPLGALRG-LGELQELY 130
Query: 335 FTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRN-LTQLITLDLSQNS 387
N+ + LE L++ + + +P+ L N L L TL L +NS
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPAGLLNGLENLDTLLLQENS 183
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 79/211 (37%), Gaps = 15/211 (7%)
Query: 547 LDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSH 606
L L L LSHN L L LG L++LD+ N L + L
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 607 NLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRI 666
N + P L KLE L + +N + ++ L L NL L+LQ N Y I P+
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI---PKG 190
Query: 667 DCGFSKLRIIDLSNNRFTGKLPSKSFLCW---NAMKIV---NTSDLKYLQDVISPKEWLL 720
G L L N + F W NA + D+K + ++ +
Sbjct: 191 FFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVKAMTSNVASVQCDN 250
Query: 721 SDEVATYDYSLK----MNNKGQIMTYDKVPD 747
SD+ Y Y K + ++G YD P+
Sbjct: 251 SDKFPVYKYPGKGCPTLGDEGDTDLYDYYPE 281
Score = 35.8 bits (81), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 275 GNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLD 334
G L L LDLS N L LP Q L +L LD+SFN+L+ P + G +LQ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LPLGALRG-LGELQELY 130
Query: 335 FTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRN-LTQLITLDLSQNS 387
N+ + LE L++ N + +P+ L N L L TL L +NS
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENS 183
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 37.7 bits (86), Expect = 0.031, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Query: 283 LDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSG 342
L L N ++ P +L++L+EL L N+L G P V + TQL LD +N+ +
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVG-VFDSLTQLTVLDLGTNQLTV 102
Query: 343 ELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYR 389
A L L+ L + CN +P + LT L L L QN +
Sbjct: 103 LPSAVFDRLVHLKELFMC-CNKLTELPRGIERLTHLTHLALDQNQLK 148
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 271 PVSI-GNLHSLKKLDLSINNLSGELPTSI-QNLVSLEELDLSFNKLSGEFPWSIVIGNFT 328
PV + +L L LDL N L+ LP+++ LV L+EL + NKL+ E P I T
Sbjct: 80 PVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRG--IERLT 135
Query: 329 QLQSLDFTSNKFSGELHASIGNLRSL 354
L L N+ H + L SL
Sbjct: 136 HLTHLALDQNQLKSIPHGAFDRLSSL 161
Score = 30.0 bits (66), Expect = 6.6, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 624 EFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRF 683
+ L + DNQI + P +L NL L L SN+ G + D ++L ++DL N+
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFD-SLTQLTVLDLGTNQL 100
Query: 684 TGKLPSKSF 692
T LPS F
Sbjct: 101 T-VLPSAVF 108
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Query: 547 LDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSH 606
L L L LSHN L L LG L++LD+ N L + L
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 607 NLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIR 662
N + P L KLE L + +N + ++ L L NL L+LQ N Y I +
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 275 GNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLD 334
G L L LDLS N L LP Q L +L LD+SFN+L+ P + G +LQ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LPLGALRG-LGELQELY 130
Query: 335 FTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRN-LTQLITLDLSQNS 387
N+ + LE L++ N + +P+ L N L L TL L +NS
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENS 183
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Query: 547 LDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSH 606
L L L LSHN L L LG L++LD+ N L + L
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 607 NLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIR 662
N + P L KLE L + +N + ++ L L NL L+LQ N Y I +
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Score = 35.8 bits (81), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 275 GNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLD 334
G L L LDLS N L LP Q L +L LD+SFN+L+ P + G +LQ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LPLGALRG-LGELQELY 130
Query: 335 FTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRN-LTQLITLDLSQNS 387
N+ + LE L++ N + +P+ L N L L TL L +NS
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENS 183
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Query: 547 LDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSH 606
L L L LSHN L L LG L++LD+ N L + L
Sbjct: 77 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 134
Query: 607 NLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIR 662
N + P L KLE L + +N + ++ L L NL L+LQ N Y I +
Sbjct: 135 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 190
Score = 36.2 bits (82), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 275 GNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLD 334
G L L LDLS N L LP Q L +L LD+SFN+L+ P + G +LQ L
Sbjct: 75 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRG-LGELQELY 131
Query: 335 FTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRN-LTQLITLDLSQNS 387
N+ + LE L++ N + +P+ L N L L TL L +NS
Sbjct: 132 LKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENS 184
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Query: 547 LDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSH 606
L L L LSHN L L LG L++LD+ N L + L
Sbjct: 76 LPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 607 NLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIR 662
N + P L KLE L + +N + ++ L L NL L+LQ N Y I +
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 189
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 275 GNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLD 334
G L L LDLS N L LP Q L +L LD+SFN+L+ P + G +LQ L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRG-LGELQELY 130
Query: 335 FTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRN-LTQLITLDLSQNS 387
N+ + LE L++ N + +P+ L N L L TL L +NS
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENS 183
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 597 SRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNK 656
S + +++L+HN + P + S+L LD G N I + P LP L VL LQ N+
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 657 FYGIIREPRIDCGFSKLRIIDLSNN 681
I + + C + L +DL +N
Sbjct: 85 LSQISDQTFVFC--TNLTELDLMSN 107
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 5/132 (3%)
Query: 526 TVNYLVSNNSFIG--EIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRAN 583
TV Y V++ S + IP L ++ +L L+HN L L P +S +L+ILD N
Sbjct: 3 TVRYNVADCSHLKLTHIPDDLP--SNITVLNLTHNQLRRLPPTNFTRYS-QLAILDAGFN 59
Query: 584 NFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGT 643
+ P L +++L HN ++ + C+ L LD+ N I I +
Sbjct: 60 SISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKN 119
Query: 644 LPNLTVLILQSN 655
NL L L N
Sbjct: 120 QKNLIKLDLSHN 131
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 495 LVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYL-VSNNSFIGEIPSWLCKLDSLEIL 553
++P +R +L N P P P R + L +SNN+ L L++LEIL
Sbjct: 450 FALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEIL 509
Query: 554 VLSHNNLSGLLPRC 567
HNNL+ L R
Sbjct: 510 DFQHNNLARLWKRA 523
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 77/180 (42%), Gaps = 17/180 (9%)
Query: 503 RFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWL-CKLDSLEILVLSHNNL- 560
R L L +S N+L P PS V + +N I ++P + L ++ + + N L
Sbjct: 102 RKLQKLYISKNHLVEIPPNLPSSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLE 160
Query: 561 -SGLLPRCLGSFSD-KLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLI 618
SG P G+F KL+ L + G IP L + L HN Q L+
Sbjct: 161 NSGFEP---GAFDGLKLNYLRISEAKLTG-IPKDL--PETLNELHLDHNKIQAIELEDLL 214
Query: 619 NCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDL 678
SKL L +G NQIR I L LP L L L +NK R+ G L+++ +
Sbjct: 215 RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS------RVPAGLPDLKLLQV 268
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 88/250 (35%), Gaps = 69/250 (27%)
Query: 88 CCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSE 147
CCS T + LDLS G I SS+ L LE L+ ++ K S
Sbjct: 364 CCSQSDF----GTTSLKYLDLS---FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416
Query: 148 IINLSRLSYLNLSHSSFFGQIPSEIXXXXXXXXXXXXXXXGYGLELQKPNFANLVEKLSN 207
++L L YL++SH+ + F + LS+
Sbjct: 417 FLSLRNLIYLDISHTH------------------------------TRVAFNGIFNGLSS 446
Query: 208 LETLDLGYVSIRST-IPHNLANLSSLTFLSLHSCGLQGRIQXXXXXXXXXXXXXXXXXXX 266
LE L + S + +P L +LTFL L C L+
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE----------------------- 483
Query: 267 XXXXPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSG-------EFP 319
P + +L SL+ L++S NN + L SL+ LD S N + FP
Sbjct: 484 -QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 542
Query: 320 WSIVIGNFTQ 329
S+ N TQ
Sbjct: 543 SSLAFLNLTQ 552
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 13/142 (9%)
Query: 547 LDSLEILVLSHNNLSGLLPRCLGSFSDKLSI-----LDLRANNFFGTIPNTFMKESRLGM 601
L+ LE L H+NL + + FS LS+ LD+ + F S L +
Sbjct: 395 LEQLEHLDFQHSNL-----KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449
Query: 602 IDLSHNLFQGR-IPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGI 660
+ ++ N FQ +P L FLD+ Q+ + P+ +L +L VL + N F+ +
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509
Query: 661 IREPRIDCGFSKLRIIDLSNNR 682
P C + L+++D S N
Sbjct: 510 DTFP-YKC-LNSLQVLDYSLNH 529
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 274 IGNLHSLKKLDLSINNL-SGELPTSIQNLVSLEELDLSFNKL 314
IG+L +LK+L+++ N + S +LP NL +LE LDLS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 547 LDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRA-NNFFGTIPNTFMKESR-LGMIDL 604
L L L+L+ N + L LG+FS S+ L A ++ N + + L +++
Sbjct: 75 LSHLSTLILTGNPIQSL---ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131
Query: 605 SHNLFQG-RIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNL 647
+HNL Q ++P N + LE LD+ N+I+ I+ + L L +
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
Query: 271 PVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQL 330
P + NL +L+ L L N L L +L +LD+S NK+ + + + L
Sbjct: 73 PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY--MFQDLYNL 130
Query: 331 QSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQ 385
+SL+ N H + L SLE L + +CN + +L +L LI L L
Sbjct: 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 10/114 (8%)
Query: 273 SIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQS 332
++ L SL++L+ S N ++ P + NL +LE LD+S NK+S V+ T L+S
Sbjct: 146 ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDIS----VLAKLTNLES 199
Query: 333 LDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQN 386
L T+N+ S +G L +L+ L++ + +L +LT L LDL+ N
Sbjct: 200 LIATNNQISD--ITPLGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANN 249
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 537 IGEIPSWLC-KLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMK 595
I ++ LC KL L++L L HN LS L + F L+ L L +N+ N F+K
Sbjct: 66 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA-FCTNLTELHLMSNSIQKIKNNPFVK 124
Query: 596 ESRLGMIDLSHN 607
+ L +DLSHN
Sbjct: 125 QKNLITLDLSHN 136
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 72/174 (41%), Gaps = 13/174 (7%)
Query: 495 LVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYL-VSNNSFIGEIPSWLCKLDSLEIL 553
++P +R +L N P P P R + L +SNN+ L L+ LEIL
Sbjct: 455 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 514
Query: 554 VLSHNNLSGLLPRC--------LGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLS 605
L HNNL+ L L S L IL+L +N F F L +IDL
Sbjct: 515 DLQHNNLARLWKHANPGGPIYFLKGLS-HLHILNLESNGFDEIPVEVFKDLFELKIIDLG 573
Query: 606 HNLFQGRIPRSLINCS-KLEFLDIGDNQIRDIFPSWLG-TLPNLTVLILQSNKF 657
N +P S+ N L+ L++ N I + G NLT L ++ N F
Sbjct: 574 LNNL-NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 626
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 597 SRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNK 656
+ + +++L+HN + + S+L LD+G N I + P LP L VL LQ N+
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 657 F 657
Sbjct: 90 L 90
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 537 IGEIPSWLC-KLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMK 595
I ++ LC KL L++L L HN LS L + F L+ L L +N+ N F+K
Sbjct: 61 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA-FCTNLTELHLMSNSIQKIKNNPFVK 119
Query: 596 ESRLGMIDLSHN 607
+ L +DLSHN
Sbjct: 120 QKNLITLDLSHN 131
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 72/174 (41%), Gaps = 13/174 (7%)
Query: 495 LVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYL-VSNNSFIGEIPSWLCKLDSLEIL 553
++P +R +L N P P P R + L +SNN+ L L+ LEIL
Sbjct: 450 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 509
Query: 554 VLSHNNLSGLLPRC--------LGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLS 605
L HNNL+ L L S L IL+L +N F F L +IDL
Sbjct: 510 DLQHNNLARLWKHANPGGPIYFLKGLS-HLHILNLESNGFDEIPVEVFKDLFELKIIDLG 568
Query: 606 HNLFQGRIPRSLINCS-KLEFLDIGDNQIRDIFPSWLG-TLPNLTVLILQSNKF 657
N +P S+ N L+ L++ N I + G NLT L ++ N F
Sbjct: 569 LNNL-NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 597 SRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNK 656
+ + +++L+HN + + S+L LD+G N I + P LP L VL LQ N+
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 657 F 657
Sbjct: 85 L 85
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 88/232 (37%), Gaps = 39/232 (16%)
Query: 106 LDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFF 165
LDLS + L S S F + L++L+L+FN + + S + L +L +L+ HS+
Sbjct: 376 LDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNL- 432
Query: 166 GQIPSEIXXXXXXXXXXXXXXXGYGLELQKPNFANLVEKLSNLETLDLGYVSIRST-IPH 224
++ + F + LS+LE L + S + +P
Sbjct: 433 ----KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 488
Query: 225 NLANLSSLTFLSLHSCGLQGRIQXXXXXXXXXXXXXXXXXXXXXXXPVSIGNLHSLKKLD 284
L +LTFL L C L+ P + +L SL+ L+
Sbjct: 489 IFTELRNLTFLDLSQCQLE------------------------QLSPTAFNSLSSLQVLN 524
Query: 285 LSINNLSGELPTSIQNLVSLEELDLSFNKLSG-------EFPWSIVIGNFTQ 329
+S NN + L SL+ LD S N + FP S+ N TQ
Sbjct: 525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 17/185 (9%)
Query: 508 LDLSSNNL--QGPLPVPPSRTVNYLVSNNSFIGEIP--SWLCKLDSLEILVLSHNNLSGL 563
LDLS N L +G T++ + SF G I S L+ LE L H+NL
Sbjct: 376 LDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL--- 432
Query: 564 LPRCLGSFSDKLSI-----LDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGR-IPRSL 617
+ + FS LS+ LD+ + F S L ++ ++ N FQ +P
Sbjct: 433 --KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 490
Query: 618 INCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIID 677
L FLD+ Q+ + P+ +L +L VL + N F+ + P C + L+++D
Sbjct: 491 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP-YKC-LNSLQVLD 548
Query: 678 LSNNR 682
S N
Sbjct: 549 YSLNH 553
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 274 IGNLHSLKKLDLSINNL-SGELPTSIQNLVSLEELDLSFNKL 314
IG+L +LK+L+++ N + S +LP NL +LE LDLS NK+
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 547 LDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRA-NNFFGTIPNTFMKESR-LGMIDL 604
L L L+L+ N + L LG+FS S+ L A ++ N + + L +++
Sbjct: 99 LSHLSTLILTGNPIQSL---ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 155
Query: 605 SHNLFQG-RIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNL 647
+HNL Q ++P N + LE LD+ N+I+ I+ + L L +
Sbjct: 156 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 537 IGEIPSWLC-KLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMK 595
I ++ LC KL L++L L HN LS L + F L+ L L +N+ N F+K
Sbjct: 71 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA-FCTNLTELHLMSNSIQKIKNNPFVK 129
Query: 596 ESRLGMIDLSHN 607
+ L +DLSHN
Sbjct: 130 QKNLITLDLSHN 141
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 72/174 (41%), Gaps = 13/174 (7%)
Query: 495 LVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYL-VSNNSFIGEIPSWLCKLDSLEIL 553
++P +R +L N P P P R + L +SNN+ L L+ LEIL
Sbjct: 460 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 519
Query: 554 VLSHNNLSGLLPRC--------LGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLS 605
L HNNL+ L L S L IL+L +N F F L +IDL
Sbjct: 520 DLQHNNLARLWKHANPGGPIYFLKGLS-HLHILNLESNGFDEIPVEVFKDLFELKIIDLG 578
Query: 606 HNLFQGRIPRSLINCS-KLEFLDIGDNQIRDIFPSWLG-TLPNLTVLILQSNKF 657
N +P S+ N L+ L++ N I + G NLT L ++ N F
Sbjct: 579 LNNL-NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 631
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 597 SRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNK 656
+ + +++L+HN + + S+L LD+G N I + P LP L VL LQ N+
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 657 F 657
Sbjct: 95 L 95
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 88/250 (35%), Gaps = 69/250 (27%)
Query: 88 CCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSE 147
CCS T + LDLS G I SS+ L LE L+ ++ K S
Sbjct: 69 CCSQSDF----GTTSLKYLDLS---FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 121
Query: 148 IINLSRLSYLNLSHSSFFGQIPSEIXXXXXXXXXXXXXXXGYGLELQKPNFANLVEKLSN 207
++L L YL++SH+ + F + LS+
Sbjct: 122 FLSLRNLIYLDISHTH------------------------------TRVAFNGIFNGLSS 151
Query: 208 LETLDLGYVSIRST-IPHNLANLSSLTFLSLHSCGLQGRIQXXXXXXXXXXXXXXXXXXX 266
LE L + S + +P L +LTFL L C L+
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE----------------------- 188
Query: 267 XXXXPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSG-------EFP 319
P + +L SL+ L++S NN + L SL+ LD S N + FP
Sbjct: 189 -QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 247
Query: 320 WSIVIGNFTQ 329
S+ N TQ
Sbjct: 248 SSLAFLNLTQ 257
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 13/142 (9%)
Query: 547 LDSLEILVLSHNNLSGLLPRCLGSFSDKLSI-----LDLRANNFFGTIPNTFMKESRLGM 601
L+ LE L H+NL + + FS LS+ LD+ + F S L +
Sbjct: 100 LEQLEHLDFQHSNL-----KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154
Query: 602 IDLSHNLFQGR-IPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGI 660
+ ++ N FQ +P L FLD+ Q+ + P+ +L +L VL + N F+ +
Sbjct: 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214
Query: 661 IREPRIDCGFSKLRIIDLSNNR 682
P C + L+++D S N
Sbjct: 215 DTFP-YKC-LNSLQVLDYSLNH 234
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 10/114 (8%)
Query: 273 SIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQS 332
++ L SL++L S N ++ P + NL +LE LD+S NK+S V+ T L+S
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDIS----VLAKLTNLES 199
Query: 333 LDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQN 386
L T+N+ S +G L +L+ L++ + +L +LT L LDL+ N
Sbjct: 200 LIATNNQISD--ITPLGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANN 249
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 100/233 (42%), Gaps = 35/233 (15%)
Query: 598 RLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKF 657
L I+ S+N P L N +KL + + +NQI DI P L L NLT L L +N+
Sbjct: 64 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 119
Query: 658 YGIIREPRIDCGFSKLRIIDLSNNRFT-----GKLPSKSFLCWNAMKIVNTSDLKYLQDV 712
I +P + L ++LS+N + L S L +++ ++ +DLK L ++
Sbjct: 120 TDI--DPL--KNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQV---TDLKPLANL 172
Query: 713 ISPKEW-LLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLK 771
+ + + S++V+ K+ N L S+I ++N+ + P I
Sbjct: 173 TTLERLDISSNKVSDISVLAKLTN-------------LESLIATNNQISDITPLGILTNL 219
Query: 772 GXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNNNFLGQIP-QQLVELTFLEF 823
G L +LTNL LDL+NN P L +LT L+
Sbjct: 220 DELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 268
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 10/114 (8%)
Query: 273 SIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQS 332
++ L SL++L S N ++ P + NL +LE LD+S NK+S V+ T L+S
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDIS----VLAKLTNLES 199
Query: 333 LDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQN 386
L T+N+ S +G L +L+ L++ + +L +LT L LDL+ N
Sbjct: 200 LIATNNQISD--ITPLGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANN 249
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 100/233 (42%), Gaps = 35/233 (15%)
Query: 598 RLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKF 657
L I+ S+N P L N +KL + + +NQI DI P L L NLT L L +N+
Sbjct: 64 NLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 119
Query: 658 YGIIREPRIDCGFSKLRIIDLSNNRFT-----GKLPSKSFLCWNAMKIVNTSDLKYLQDV 712
I +P + L ++LS+N + L S L +++ ++ +DLK L ++
Sbjct: 120 TDI--DPL--KNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQV---TDLKPLANL 172
Query: 713 ISPKEW-LLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLK 771
+ + + S++V+ K+ N L S+I ++N+ + P I
Sbjct: 173 TTLERLDISSNKVSDISVLAKLTN-------------LESLIATNNQISDITPLGILTNL 219
Query: 772 GXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNNNFLGQIP-QQLVELTFLEF 823
G L +LTNL LDL+NN P L +LT L+
Sbjct: 220 DELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKL 268
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 747 DILTSIILSSNRFDGMIPTSIANLKGXXXXXXXXXXXXGHIP-SCLGNLTNLESLDLSNN 805
++L ++LS N FD + S AN H+ CL L NL++LDLS+N
Sbjct: 298 NLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHN 357
Query: 806 NFLGQ--IPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATF 844
+ QL L+ L+ N+S N P G Q F
Sbjct: 358 DIEASDCCSLQLKNLSHLQTLNLSHNE-----PLGLQSQAF 393
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 11/67 (16%)
Query: 101 GHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPS-EIINLSRLSYLNL 159
G+V KL L CL KL +L+ L+L+ ND ++S+ S ++ NLS L LNL
Sbjct: 331 GNVKKLHLGVGCLE----------KLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNL 380
Query: 160 SHSSFFG 166
SH+ G
Sbjct: 381 SHNEPLG 387
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 93 GVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFND 138
GV C E G++ LDLS++ + S S L L HL+ LNL+ N+
Sbjct: 339 GVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNE 384
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 106 LDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFF 165
LDLSN ++ N S+++FK L L L N +E+P+EI NLS L L+LSH+
Sbjct: 229 LDLSNLQIF---NISANIFKYDFLTRLYLNGNSL--TELPAEIKNLSNLRVLDLSHNR-L 282
Query: 166 GQIPSEI 172
+P+E+
Sbjct: 283 TSLPAEL 289
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 280 LKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNK 339
L +L L+ N+L+ ELP I+NL +L LDLS N+L+ +G+ QL+ F N
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS---LPAELGSCFQLKYFYFFDNM 304
Query: 340 FSGELHASIGNLRSLEVLAI 359
+ L GNL +L+ L +
Sbjct: 305 VT-TLPWEFGNLCNLQFLGV 323
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 787 IPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDN 846
+P+ + NL+NL LDLS+N L +P +L L++F DN +T +P +F N
Sbjct: 262 LPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNMVTT-LPW--EFGNLCN 317
Query: 847 SSFESNSGLCGRPLSRE 863
F G+ G PL ++
Sbjct: 318 LQF---LGVEGNPLEKQ 331
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Query: 546 KLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLS 605
+L +L L L N L L PR S + KL+ L L N F K + L + L
Sbjct: 107 QLVNLAELRLDRNQLKSLPPRVFDSLT-KLTYLSLGYNELQSLPKGVFDKLTSLKELRLY 165
Query: 606 HNLFQGRIPRSLIN-CSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSN 655
+N + R+P + ++L+ L + +NQ++ + +L L +L LQ N
Sbjct: 166 NNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 8/112 (7%)
Query: 281 KKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLD---FTS 337
KKLDL N LS + L L L L+ NKL ++ G F +L++L+ T
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-----TLPAGIFKELKNLETLWVTD 94
Query: 338 NKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYR 389
NK L +L L + R P +LT+L L L N +
Sbjct: 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 617 LINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRII 676
L N SKL L DN+I DI P L +LPNL + L++N+ + P + S L I+
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV--SPLANT--SNLFIV 222
Query: 677 DLSNNRFTGK 686
L+N T +
Sbjct: 223 TLTNQTITNQ 232
>pdb|1JWI|A Chain A, Crystal Structure Of Bitiscetin, A Von Willeband Factor-
Dependent Platelet Aggregation Inducer.
pdb|1UEX|A Chain A, Crystal Structure Of Von Willebrand Factor A1 Domain
Complexed With Snake Venom Bitiscetin
Length = 131
Score = 33.1 bits (74), Expect = 0.67, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 71 GCRPKAASWKPEEGNI--DCCSWDGVE--CSENTGHVMKLDLSNSCLYGSINSSSSLFKL 126
GC P +S+K + +W+ E C EN+GH+ +D + + +S +L K
Sbjct: 3 GCLPDWSSYKGHCYKVFKKVGTWEDAEKFCVENSGHLASIDSKEEADFVTKLASQTLTKF 62
Query: 127 VHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSS 163
V+ W+ L ++ K+ + + + S + Y N+ +
Sbjct: 63 VYDAWIGLR-DESKTQQCSPQWTDGSSVVYENVDEPT 98
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 93 GVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFND 138
G C E ++ KLDLS+S + S + L L HL++LNL++N+
Sbjct: 341 GTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNE 386
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 42/142 (29%)
Query: 101 GHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPS-EIINLSRLSYLNL 159
G++ KLDL CL KL +L+ L+L+ +D ++S+ + ++ NL L YLNL
Sbjct: 333 GNMRKLDLGTRCLE----------KLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNL 382
Query: 160 SHSSFFGQIPSEIXXXXXXXXXXXXXXXGYGLELQKPNFANLVEKLSNLETLDLGYVSIR 219
S++ GLE Q ++ LE LD+ + +
Sbjct: 383 SYNE------------------------PLGLEDQA------FKECPQLELLDVAFTHLH 412
Query: 220 STIPHN-LANLSSLTFLSLHSC 240
PH+ NL L L+L C
Sbjct: 413 VKAPHSPFQNLHLLRVLNLSHC 434
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 12/135 (8%)
Query: 575 LSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIR 634
L IL L + N F + +DLSHN G +L + L +L++ N IR
Sbjct: 477 LEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIR 535
Query: 635 DIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLC 694
I P L L +++ L N +DC S + I S+ C
Sbjct: 536 IIPPHLLPALSQQSIINLSHNP---------LDCTCSNIHFITWYKENLHKLEDSEETTC 586
Query: 695 WN--AMKIVNTSDLK 707
N +++ V SD+K
Sbjct: 587 ANPPSLRGVKLSDVK 601
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 79/198 (39%), Gaps = 38/198 (19%)
Query: 202 VEKLSNLETLDLGYVSIRSTIPHN--LANLSSLTFLSL---HSCGLQGRIQXXXXXXXXX 256
+EKL NL+ LDL + I ++ N L NL L +L+L GL+ +
Sbjct: 345 LEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQ----------- 393
Query: 257 XXXXXXXXXXXXXXPVSIGNLHSLKKLDLSINNLSGELPTS-IQNLVSLEELDLSFNKLS 315
+ L+ LD++ +L + P S QNL L L+LS L
Sbjct: 394 ----------------AFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLD 437
Query: 316 GEFPWSIVIGNFTQLQSLDFTSNKFS-GELHAS--IGNLRSLEVLAIGRCNFSGRIPSSL 372
++ L+ L+ N F G + + + + SLE+L + CN +
Sbjct: 438 TSNQH--LLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAF 495
Query: 373 RNLTQLITLDLSQNSYRG 390
L + LDLS NS G
Sbjct: 496 HGLRNVNHLDLSHNSLTG 513
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 274 IGNLHSLKKLDLSINNL-SGELPTSIQNLVSLEELDLSFNKL 314
IG+L +LK+L+++ N + S +LP NL +LE LDLS NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 547 LDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRA-NNFFGTIPNTFMKESR-LGMIDL 604
L L L+L+ N + L LG+FS S+ L A ++ N + + L +++
Sbjct: 76 LSHLSTLILTGNPIQSL---ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 132
Query: 605 SHNLFQG-RIPRSLINCSKLEFLDIGDNQIRDIF 637
+HNL Q ++P N + LE LD+ N+I+ I+
Sbjct: 133 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 166
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 274 IGNLHSLKKLDLSINNL-SGELPTSIQNLVSLEELDLSFNKLSGEF 318
IG+L +LK+L+++ N + S +LP NL +LE LDLS NK+ +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 166
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 547 LDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRA-NNFFGTIPNTFMKESR-LGMIDL 604
L L L+L+ N + L LG+FS S+ L A ++ N + + L +++
Sbjct: 76 LSHLSTLILTGNPIQSL---ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 132
Query: 605 SHNLFQG-RIPRSLINCSKLEFLDIGDNQIRDIF 637
+HNL Q ++P N + LE LD+ N+I+ I+
Sbjct: 133 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 166
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 274 IGNLHSLKKLDLSINNL-SGELPTSIQNLVSLEELDLSFNKLSGEF 318
IG+L +LK+L+++ N + S +LP NL +LE LDLS NK+ +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 547 LDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRA-NNFFGTIPNTFMKESR-LGMIDL 604
L L L+L+ N + L LG+FS S+ L A ++ N + + L +++
Sbjct: 75 LSHLSTLILTGNPIQSL---ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131
Query: 605 SHNLFQG-RIPRSLINCSKLEFLDIGDNQIRDIF 637
+HNL Q ++P N + LE LD+ N+I+ I+
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 274 IGNLHSLKKLDLSINNL-SGELPTSIQNLVSLEELDLSFNKLSGEF 318
IG+L +LK+L+++ N + S +LP NL +LE LDLS NK+ +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 167
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 547 LDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRA-NNFFGTIPNTFMKESR-LGMIDL 604
L L L+L+ N + L LG+FS S+ L A ++ N + + L +++
Sbjct: 77 LSHLSTLILTGNPIQSL---ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 133
Query: 605 SHNLFQG-RIPRSLINCSKLEFLDIGDNQIRDIF 637
+HNL Q ++P N + LE LD+ N+I+ I+
Sbjct: 134 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 167
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 274 IGNLHSLKKLDLSINNL-SGELPTSIQNLVSLEELDLSFNKL 314
IG+L +LK+L+++ N + S +LP NL +LE LDLS NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 547 LDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRA-NNFFGTIPNTFMKESR-LGMIDL 604
L L L+L+ N + L LG+FS S+ L A ++ N + + L +++
Sbjct: 77 LSHLSTLILTGNPIQSL---ALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNV 133
Query: 605 SHNLFQG-RIPRSLINCSKLEFLDIGDNQIRDIF 637
+HNL Q ++P N + LE LD+ N+I+ I+
Sbjct: 134 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 167
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 274 IGNLHSLKKLDLSINNL-SGELPTSIQNLVSLEELDLSFNKL 314
IG+L +LK+L+++ N + S +LP NL +LE LDLS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 11/120 (9%)
Query: 547 LDSLEILVLSHNNLSGLLPRCLGSFSDKLSI-----LDLRANNFFGTIPNTFMKESRLGM 601
L+ LE L H+NL + + FS LS+ LD+ + F S L +
Sbjct: 395 LEQLEHLDFQHSNL-----KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449
Query: 602 IDLSHNLFQGR-IPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGI 660
+ ++ N FQ +P L FLD+ Q+ + P+ +L +L VL + SN+ +
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 547 LDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRA-NNFFGTIPNTFMKESR-LGMIDL 604
L L L+L+ N + L LG+FS S+ L A ++ N + + L +++
Sbjct: 75 LSHLSTLILTGNPIQSL---ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131
Query: 605 SHNLFQG-RIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNL 647
+HNL Q ++P N + LE LD+ N+I+ I+ + L L +
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 58/157 (36%), Gaps = 38/157 (24%)
Query: 88 CCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSE 147
CCS T + LDLS G I SS+ L LE L+ ++ K S
Sbjct: 364 CCSQSDF----GTTSLKYLDLS---FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416
Query: 148 IINLSRLSYLNLSHSSFFGQIPSEIXXXXXXXXXXXXXXXGYGLELQKPNFANLVEKLSN 207
++L L YL++SH+ + F + LS+
Sbjct: 417 FLSLRNLIYLDISHTH------------------------------TRVAFNGIFNGLSS 446
Query: 208 LETLDLGYVSIRST-IPHNLANLSSLTFLSLHSCGLQ 243
LE L + S + +P L +LTFL L C L+
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 575 LSILDLRANNFFGT-IPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQI 633
L +L + N+F +P+ F + L +DLS + P + + S L+ L++ NQ+
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Query: 634 RDIFPSWLGTLPNLTVLILQSNKFYGIIREPRID 667
+ + L +L + L +N + PRID
Sbjct: 507 KSVPDGIFDRLTSLQKIWLHTNPW--DCSCPRID 538
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 68/171 (39%), Gaps = 38/171 (22%)
Query: 550 LEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTF----------MKESRL 599
L +LVL N+LS L PR + + KL+ L + NN +TF + +RL
Sbjct: 119 LTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177
Query: 600 GMIDLS--HNLFQGRIPRSLINCSKL----EFLDIGDNQIRDIF---------------- 637
+DLS +LF + +L++ + E LD N I +
Sbjct: 178 THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN 237
Query: 638 ---PSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTG 685
+WL P L + L N+ I+ P + +L + +SNNR
Sbjct: 238 LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFV--KMQRLERLYISNNRLVA 286
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 10/121 (8%)
Query: 549 SLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNL 608
++E L SHN+++ + G + +L+IL L+ NN T + L +DLS+N
Sbjct: 206 AVEELDASHNSINVVR----GPVNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNE 259
Query: 609 FQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGT-LPNLTVLILQSNKFYGIIR-EPRI 666
+ + + +LE L I +N++ + + G +P L VL L N + R +P+
Sbjct: 260 LEKIMYHPFVKMQRLERLYISNNRL--VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQF 317
Query: 667 D 667
D
Sbjct: 318 D 318
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 283 LDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGN-FTQLQSL---DFTSN 338
+DLS+N+++ TS L DL F K+ + P ++ N F L SL N
Sbjct: 35 VDLSLNSIAELNETSFSRLQ-----DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 339 KFSGELHASIGNLRSLEVLAIGRCNFSGRIPSS--LRNLTQLITLDLSQNSYRGTMELDF 396
+F + L +LEVL + +CN G + S + LT L L L N+ + F
Sbjct: 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Query: 397 LL 398
L
Sbjct: 150 FL 151
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 24/140 (17%)
Query: 525 RTVNYLVSNNSFIGEIPSWLCKLD----------------SLEILVLSHNNLSGLLPRCL 568
+T ++ NN+F G + KLD +LE+L L+ NL G +
Sbjct: 64 QTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLS-- 121
Query: 569 GSFSDKLSILD---LRANNFFGTIPNT-FMKESRLGMIDLSHNLFQGRIPRSLINCSKLE 624
G+F L+ L+ LR NN P + F+ R ++DL+ N + L+N
Sbjct: 122 GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKH 181
Query: 625 F--LDIGDNQIRDIFPSWLG 642
F L + ++D+ WLG
Sbjct: 182 FTLLRLSSITLQDMNEYWLG 201
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 68/171 (39%), Gaps = 38/171 (22%)
Query: 550 LEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTF----------MKESRL 599
L +LVL N+LS L PR + + KL+ L + NN +TF + +RL
Sbjct: 125 LTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183
Query: 600 GMIDLS--HNLFQGRIPRSLINCSKL----EFLDIGDNQIRDIF---------------- 637
+DLS +LF + +L++ + E LD N I +
Sbjct: 184 THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN 243
Query: 638 ---PSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTG 685
+WL P L + L N+ I+ P + +L + +SNNR
Sbjct: 244 LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFV--KMQRLERLYISNNRLVA 292
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 10/121 (8%)
Query: 549 SLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNL 608
++E L SHN+++ + G + +L+IL L+ NN T + L +DLS+N
Sbjct: 212 AVEELDASHNSINVVR----GPVNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNE 265
Query: 609 FQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGT-LPNLTVLILQSNKFYGIIR-EPRI 666
+ + + +LE L I +N++ + + G +P L VL L N + R +P+
Sbjct: 266 LEKIMYHPFVKMQRLERLYISNNRL--VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQF 323
Query: 667 D 667
D
Sbjct: 324 D 324
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 152 SRLSYLNLSHSSFFGQIPSEIXXXXXXXXXXXXXXXGYGLELQKPNFANLVEKLSNLETL 211
SRL LNLS F + ++ GY LQK + + LV + NL L
Sbjct: 168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227
Query: 212 DLG-YVSIRSTIPHNLANLSSLTFLSLHSC 240
DL V +++ L+ L LSL C
Sbjct: 228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 542 SWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGM 601
S + L S++ L L+ ++ + P L S+ L +L L N P + L
Sbjct: 107 SAIAGLQSIKTLDLTSTQITDVTP--LAGLSN-LQVLYLDLNQITNISP--LAGLTNLQY 161
Query: 602 IDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGI 660
+ + +N P L N SKL L DN+I DI P L +LPNL + L+ N+ +
Sbjct: 162 LSIGNNQVNDLTP--LANLSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISDV 216
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 78/195 (40%), Gaps = 25/195 (12%)
Query: 203 EKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQXXXXXXXXXXXXXXX 262
++ + LETL L +R+ +P ++A+L+ L LS+ +C +
Sbjct: 124 QQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ-- 180
Query: 263 XXXXXXXXPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSI 322
+ NL SL+ I +L P SI NL +L+ L + + LS P
Sbjct: 181 ----------GLVNLQSLRLEWTGIRSL----PASIANLQNLKSLKIRNSPLSALGP--- 223
Query: 323 VIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLD 382
I + +L+ LD G L+ L + C+ +P + LTQL LD
Sbjct: 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283
Query: 383 LSQNSYRGTMELDFL 397
L RG + L L
Sbjct: 284 L-----RGCVNLSRL 293
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 70/181 (38%), Gaps = 25/181 (13%)
Query: 129 LEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEIXXXXXXXXXXXXXXXG 188
LE L LA N ++ +P+ I +L+RL L++ ++P +
Sbjct: 129 LETLTLARNPLRA--LPASIASLNRLRELSIRACPELTELPEPLAST------------- 173
Query: 189 YGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQX 248
+ + + L NL++L L + IRS +P ++ANL +L L + + L +
Sbjct: 174 --------DASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSA-LGP 223
Query: 249 XXXXXXXXXXXXXXXXXXXXXXPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELD 308
P G LK+L L + LP I L LE+LD
Sbjct: 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283
Query: 309 L 309
L
Sbjct: 284 L 284
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 152 SRLSYLNLSHSSFFGQIPSEIXXXXXXXXXXXXXXXGYGLELQKPNFANLVEKLSNLETL 211
SRL LNLS F + ++ GY LQK + + LV + NL L
Sbjct: 130 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 189
Query: 212 DLG-YVSIRSTIPHNLANLSSLTFLSLHSC 240
DL V +++ L+ L LSL C
Sbjct: 190 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 219
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 10/109 (9%)
Query: 591 NTF--MKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLT 648
NTF + S + +DLSH R L+ L++ N+I I L NL
Sbjct: 258 NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317
Query: 649 VLILQSN--------KFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPS 689
VL L N FYG+ + ID + + II +F KL +
Sbjct: 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 59/155 (38%), Gaps = 8/155 (5%)
Query: 534 NSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTF 593
N+F G S + LD LSH + L R + D L +L+L N F
Sbjct: 258 NTFAGLARSSVRHLD------LSHGFVFSLNSRVFETLKD-LKVLNLAYNKINKIADEAF 310
Query: 594 MKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQ 653
L +++LS+NL + K+ ++D+ N I I L L L L+
Sbjct: 311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLR 370
Query: 654 SNKFYGIIREPRI-DCGFSKLRIIDLSNNRFTGKL 687
N I P I D S +++ L T L
Sbjct: 371 DNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANL 405
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 298 IQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVL 357
+ NL +LE LD+S NK+S V+ T L+SL T+N+ S +G L +L+ L
Sbjct: 173 LANLTTLERLDISSNKVSDIS----VLAKLTNLESLIATNNQISD--ITPLGILTNLDEL 226
Query: 358 AIGRCNFSGRIPSSLRNLTQLITLDLSQN 386
++ + +L +LT L LDL+ N
Sbjct: 227 SLNGNQL--KDIGTLASLTNLTDLDLANN 253
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
Query: 271 PVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQL 330
P + L+++DLS N +S P + Q L SL L L NK++ E P S+ G L
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEG-LFSL 106
Query: 331 QSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRG 390
Q L +NK + + +L +L +L++ + L + T+ L+QN +
Sbjct: 107 QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166
Query: 391 TMELDFL 397
L +L
Sbjct: 167 DCHLKWL 173
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 62/131 (47%), Gaps = 5/131 (3%)
Query: 537 IGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKE 596
+ +I ++ SL+ L +S N++S + S++ L L++ +N TI
Sbjct: 363 LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--P 420
Query: 597 SRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNK 656
R+ ++DL N + IP+ ++ L+ L++ NQ++ + L +L + L +N
Sbjct: 421 PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479
Query: 657 FYGIIREPRID 667
+ PRID
Sbjct: 480 WDCSC--PRID 488
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 14/182 (7%)
Query: 508 LDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEI-PSWLCKLDSLEILVLSHNNLSGLLPR 566
+D S N L +P S+ L + ++I E+ S + L L IL++SHN + L
Sbjct: 5 VDRSKNGLIH-VPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDI 62
Query: 567 CLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGR-IPRSLINCSKLEF 625
+ F+ +L LDL N + + L +DLS N F I + N S+L+F
Sbjct: 63 SVFKFNQELEYLDLSHNKL---VKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKF 119
Query: 626 LDIGDNQIRD--IFPSWLGTLPNLTVLILQSNKFYGIIREPR--IDCGFSKLRIIDLSNN 681
L + + + P + L N++ ++L + YG +P D L I+ +N
Sbjct: 120 LGLSTTHLEKSSVLP--IAHL-NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK 176
Query: 682 RF 683
F
Sbjct: 177 EF 178
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 298 IQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVL 357
+ NL +LE LD+S NK+S V+ T L+SL T+N+ S +G L +L+ L
Sbjct: 168 LANLTTLERLDISSNKVSDIS----VLAKLTNLESLIATNNQISD--ITPLGILTNLDEL 221
Query: 358 AIGRCNFSGRIPSSLRNLTQLITLDLSQN 386
++ + +L +LT L LDL+ N
Sbjct: 222 SLNGNQL--KDIGTLASLTNLTDLDLANN 248
>pdb|1BNF|A Chain A, Barnase T70cS92C DISULFIDE MUTANT
pdb|1BNF|B Chain B, Barnase T70cS92C DISULFIDE MUTANT
pdb|1BNF|C Chain C, Barnase T70cS92C DISULFIDE MUTANT
Length = 110
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 677 DLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLL 720
D+ +NR GKLP KS CW I TS + ++ +WL+
Sbjct: 54 DIFSNR-EGKLPGKSGRCWREADINYTSGFRNSDRILYSCDWLI 96
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
Query: 271 PVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQL 330
P + L+++DLS N +S P + Q L SL L L NK++ E P S+ G L
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEG-LFSL 106
Query: 331 QSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRG 390
Q L +NK + + +L +L +L++ + L + T+ L+QN +
Sbjct: 107 QLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166
Query: 391 TMELDFL 397
L +L
Sbjct: 167 DCHLKWL 173
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 298 IQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVL 357
+ NL +LE LD+S NK+S V+ T L+SL T+N+ S +G L +L+ L
Sbjct: 172 LANLTTLERLDISSNKVSDIS----VLAKLTNLESLIATNNQISD--ITPLGILTNLDEL 225
Query: 358 AIGRCNFSGRIPSSLRNLTQLITLDLSQN 386
++ + +L +LT L LDL+ N
Sbjct: 226 SLNGNQL--KDIGTLASLTNLTDLDLANN 252
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 65/126 (51%), Gaps = 24/126 (19%)
Query: 276 NLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNK-----LSGEFP-----WSIVIG 325
+L SL+ LDLS N+LS + L SL+ L+L N ++ FP ++ IG
Sbjct: 72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131
Query: 326 N---FTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLD 382
N F++++ +DF A + +L LE+ A+ N+ + S+R++ L TL
Sbjct: 132 NVETFSEIRRIDF----------AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL-TLH 180
Query: 383 LSQNSY 388
LS++++
Sbjct: 181 LSESAF 186
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 298 IQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVL 357
+ NL +LE LD+S NK+S V+ T L+SL T+N+ S +G L +L+ L
Sbjct: 168 LANLTTLERLDISSNKVSDIS----VLAKLTNLESLIATNNQISD--ITPLGILTNLDEL 221
Query: 358 AIGRCNFSGRIPSSLRNLTQLITLDLSQN 386
++ + +L +LT L LDL+ N
Sbjct: 222 SLNGNQL--KDIGTLASLTNLTDLDLANN 248
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 64/155 (41%), Gaps = 30/155 (19%)
Query: 190 GLELQKPNFANLVEK----LSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGR 245
+ LQK F N+ S L+ LDL + S +P L LS+L L L + +
Sbjct: 258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENL 316
Query: 246 IQXXXXXXXXXXXXXXXXXXXXXXXPVSIGNLHSLKKLDLSINNLSGELPTS-IQNLVSL 304
Q +S N SL L + N EL T ++NL +L
Sbjct: 317 CQ------------------------ISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352
Query: 305 EELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNK 339
ELDLS + + ++ + N + LQSL+ + N+
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 65/126 (51%), Gaps = 24/126 (19%)
Query: 276 NLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNK-----LSGEFP-----WSIVIG 325
+L SL+ LDLS N+LS + L SL+ L+L N ++ FP ++ IG
Sbjct: 98 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 157
Query: 326 N---FTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLD 382
N F++++ +DF A + +L LE+ A+ N+ + S+R++ L TL
Sbjct: 158 NVETFSEIRRIDF----------AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL-TLH 206
Query: 383 LSQNSY 388
LS++++
Sbjct: 207 LSESAF 212
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 126 LVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSF 164
+ L L+L+FNDF + E NL++L++L LS + F
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 51/113 (45%), Gaps = 15/113 (13%)
Query: 551 EILVLSHNNLSGL-LPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLF 609
+ L LS N++S L +P SF +L +L L N + F+ L +D+SHN
Sbjct: 55 KALSLSQNSISELRMPDI--SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112
Query: 610 QGRIPRSLINC---SKLEFLDIGDNQIRDIFP--SWLGTLPNLTVLILQSNKF 657
Q I+C + L LD+ N D+ P G L LT L L + KF
Sbjct: 113 QN------ISCCPMASLRHLDLSFNDF-DVLPVCKEFGNLTKLTFLGLSAAKF 158
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 64/139 (46%), Gaps = 12/139 (8%)
Query: 547 LDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSH 606
+ SLE L +S N+L+ ++++ + +L+L +N G++ ++ ++DL +
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHN 459
Query: 607 NLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRI 666
N IP+ + + L+ L++ NQ++ + L +L + L N +
Sbjct: 460 NRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW--------- 509
Query: 667 DCGFSKLRIIDLSNNRFTG 685
DC +R + N+ +G
Sbjct: 510 DCTCPGIRYLSEWINKHSG 528
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 58/152 (38%), Gaps = 2/152 (1%)
Query: 507 TLDLSSNNLQGPLPVPPSRTVNYLVSNNSF-IGEIPSWLCKLDSLEILVLSHNNLSGLLP 565
T+D S+ L P T ++NN F + E KL L + S+N ++ +
Sbjct: 15 TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE 74
Query: 566 RCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEF 625
S IL L +N F L + L N S I S +
Sbjct: 75 GAFEGASGVNEIL-LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRL 133
Query: 626 LDIGDNQIRDIFPSWLGTLPNLTVLILQSNKF 657
L + DNQI + P TL +L+ L L +N F
Sbjct: 134 LSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 3/133 (2%)
Query: 561 SGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKES-RLGMIDLSHNLFQGRIPRSLIN 619
SG L ++ + LDL +NN I N+ ++ L + L+ N S +
Sbjct: 40 SGSLNSIPSGLTEAVKSLDL-SNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS 98
Query: 620 CSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLS 679
LE LD+ N + ++ SW L +LT L L N Y + E + +KL+I+ +
Sbjct: 99 LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVG 157
Query: 680 NNRFTGKLPSKSF 692
N K+ K F
Sbjct: 158 NMDTFTKIQRKDF 170
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 281 KKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKF 340
++L L+ N ++ P +LV+L++L + NKL+ P + V TQL LD N
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IP-TGVFDKLTQLTQLDLNDNHL 93
Query: 341 SGELHASIGNLRSL 354
+ NL+SL
Sbjct: 94 KSIPRGAFDNLKSL 107
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 621 SKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDL 678
+KL+ L + DNQI DI P L L L L L N I + R CG L +++L
Sbjct: 151 TKLDTLSLEDNQISDIVP--LACLTKLQNLYLSKNH----ISDLRALCGLKNLDVLEL 202
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 6/142 (4%)
Query: 723 EVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGXXXXXXXXXX 782
E D ++ +NKG + +P +T + L N+F ++P ++N K
Sbjct: 7 ECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNR 65
Query: 783 XXGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFA 842
N+T L +L LS N P+ L L ++ N ++ +P+G
Sbjct: 66 ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV-VPEG---- 120
Query: 843 TFDNSSFESNSGLCGRPLSREC 864
F++ S S+ + PL +C
Sbjct: 121 AFNDLSALSHLAIGANPLYCDC 142
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Query: 271 PVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQL 330
P + N L +DLS N +S S N+ L L LS+N+L P + L
Sbjct: 47 PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRT--FDGLKSL 104
Query: 331 QSLDFTSNKFSGELHASIGNLRSLEVLAIG 360
+ L N S + +L +L LAIG
Sbjct: 105 RLLSLHGNDISVVPEGAFNDLSALSHLAIG 134
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 623 LEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNR 682
LE LD+ N + ++ SW L +LT L L N Y + E + +KL+I+ + N
Sbjct: 76 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMD 134
Query: 683 FTGKLPSKSF 692
K+ K F
Sbjct: 135 TFTKIQRKDF 144
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 13/161 (8%)
Query: 527 VNYLVSNNSFIGEIPSWLC-KLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNF 585
+ YL+ + + +P+ + KL +L+ LVL N L L ++ L+ L+L N
Sbjct: 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN-LTYLNLAHNQL 145
Query: 586 FGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLIN-CSKLEFLDIGDNQIRDIFPSWLGTL 644
F K + L +DLS+N Q +P + + ++L+ L + NQ++ + L
Sbjct: 146 QSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 204
Query: 645 PNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTG 685
+L + L N + DC +R + N+ +G
Sbjct: 205 TSLQYIWLHDNPW---------DCTCPGIRYLSEWINKHSG 236
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,055,863
Number of Sequences: 62578
Number of extensions: 888244
Number of successful extensions: 2772
Number of sequences better than 100.0: 98
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 1871
Number of HSP's gapped (non-prelim): 564
length of query: 887
length of database: 14,973,337
effective HSP length: 107
effective length of query: 780
effective length of database: 8,277,491
effective search space: 6456442980
effective search space used: 6456442980
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)