Query 040113
Match_columns 887
No_of_seqs 802 out of 5277
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 05:16:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040113.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040113hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.5E-70 7.7E-75 678.9 48.1 584 39-859 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.1E-55 4.6E-60 546.6 38.3 515 176-856 69-585 (968)
3 KOG4194 Membrane glycoprotein 100.0 3.7E-36 8E-41 314.2 7.8 367 231-654 79-448 (873)
4 KOG0472 Leucine-rich repeat pr 100.0 4.6E-39 1E-43 322.0 -15.5 478 103-658 47-541 (565)
5 KOG4194 Membrane glycoprotein 100.0 4.2E-35 9.1E-40 306.4 7.7 368 281-804 81-448 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 2.8E-37 6E-42 309.3 -13.5 485 123-690 41-545 (565)
7 KOG0618 Serine/threonine phosp 100.0 5.9E-35 1.3E-39 321.8 -3.4 209 157-414 3-211 (1081)
8 KOG0618 Serine/threonine phosp 100.0 1.4E-34 3E-39 318.9 -3.4 512 132-839 3-516 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 6.2E-32 1.3E-36 284.1 -3.9 374 205-665 6-382 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 4E-31 8.6E-36 278.0 -1.3 250 126-414 6-257 (1255)
11 KOG4237 Extracellular matrix p 99.9 8.9E-26 1.9E-30 226.9 -2.8 226 543-805 269-498 (498)
12 PLN03210 Resistant to P. syrin 99.9 1.3E-21 2.8E-26 243.5 27.7 360 101-487 532-904 (1153)
13 PLN03210 Resistant to P. syrin 99.9 5.6E-21 1.2E-25 238.0 27.0 345 249-656 553-904 (1153)
14 KOG4237 Extracellular matrix p 99.9 1.1E-23 2.4E-28 212.0 -3.2 275 129-413 69-357 (498)
15 PRK15387 E3 ubiquitin-protein 99.9 7.4E-21 1.6E-25 218.9 17.2 81 748-837 383-463 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 4.4E-20 9.5E-25 212.5 16.6 187 549-819 283-469 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 8.8E-19 1.9E-23 203.5 11.7 183 549-808 242-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.7E-18 3.6E-23 201.2 13.0 227 524-833 199-429 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 9E-19 1.9E-23 190.0 5.6 281 132-412 3-317 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 8E-18 1.7E-22 182.5 5.1 260 156-417 2-293 (319)
21 KOG0617 Ras suppressor protein 99.6 1.5E-17 3.2E-22 148.8 -6.4 163 122-321 28-191 (264)
22 KOG0617 Ras suppressor protein 99.5 1.9E-16 4E-21 141.8 -3.9 87 747-836 127-216 (264)
23 PLN03150 hypothetical protein; 99.4 4.5E-13 9.7E-18 155.9 9.2 118 748-865 419-538 (623)
24 PLN03150 hypothetical protein; 99.4 1.8E-12 3.9E-17 150.9 13.5 125 38-187 369-501 (623)
25 KOG1909 Ran GTPase-activating 99.1 8.7E-12 1.9E-16 125.4 -0.2 137 252-388 155-310 (382)
26 KOG3207 Beta-tubulin folding c 99.0 7.2E-11 1.6E-15 122.1 1.9 120 372-493 142-263 (505)
27 KOG3207 Beta-tubulin folding c 99.0 5.3E-11 1.1E-15 123.0 0.7 165 201-365 167-339 (505)
28 COG4886 Leucine-rich repeat (L 99.0 3.3E-10 7.2E-15 126.4 7.0 104 552-660 97-201 (394)
29 KOG0532 Leucine-rich repeat (L 99.0 2.7E-11 5.9E-16 128.9 -3.1 192 129-363 77-271 (722)
30 COG4886 Leucine-rich repeat (L 99.0 8.6E-10 1.9E-14 123.1 8.0 179 123-316 112-291 (394)
31 KOG0532 Leucine-rich repeat (L 99.0 4.2E-11 9.2E-16 127.5 -2.7 194 426-655 74-270 (722)
32 KOG1909 Ran GTPase-activating 98.9 1.8E-10 3.9E-15 116.1 1.1 205 201-418 25-257 (382)
33 KOG1259 Nischarin, modulator o 98.9 4.4E-10 9.5E-15 110.3 1.5 200 475-687 213-415 (490)
34 KOG4658 Apoptotic ATPase [Sign 98.9 1.7E-09 3.6E-14 128.7 5.7 179 126-315 544-730 (889)
35 KOG1259 Nischarin, modulator o 98.9 5.6E-10 1.2E-14 109.6 1.0 140 245-392 275-415 (490)
36 PF14580 LRR_9: Leucine-rich r 98.9 2E-09 4.4E-14 102.3 4.5 106 230-341 19-126 (175)
37 PF14580 LRR_9: Leucine-rich r 98.8 4.2E-09 9E-14 100.2 4.9 85 325-410 61-148 (175)
38 PF13855 LRR_8: Leucine rich r 98.8 4.5E-09 9.7E-14 82.0 3.4 60 772-831 2-61 (61)
39 PF13855 LRR_8: Leucine rich r 98.8 6.5E-09 1.4E-13 81.1 3.6 61 747-807 1-61 (61)
40 KOG0531 Protein phosphatase 1, 98.7 1.9E-09 4E-14 120.5 -0.7 246 546-837 70-323 (414)
41 KOG4658 Apoptotic ATPase [Sign 98.7 2.4E-08 5.2E-13 118.9 6.8 85 202-287 567-651 (889)
42 KOG0531 Protein phosphatase 1, 98.7 3.1E-09 6.6E-14 118.7 -1.0 171 204-388 116-289 (414)
43 KOG2120 SCF ubiquitin ligase, 98.6 1.5E-09 3.2E-14 106.8 -5.2 184 129-339 187-374 (419)
44 PF08263 LRRNT_2: Leucine rich 98.5 1.1E-07 2.3E-12 67.6 4.3 42 40-97 2-43 (43)
45 KOG2120 SCF ubiquitin ligase, 98.4 2.3E-08 5E-13 98.5 -3.2 158 255-413 186-349 (419)
46 KOG4579 Leucine-rich repeat (L 98.2 6.2E-08 1.4E-12 84.5 -3.1 87 748-838 54-141 (177)
47 KOG4341 F-box protein containi 98.2 3.4E-08 7.4E-13 102.1 -6.1 299 128-433 139-458 (483)
48 KOG2982 Uncharacterized conser 98.2 4E-07 8.8E-12 89.9 1.2 86 374-460 69-156 (418)
49 KOG1859 Leucine-rich repeat pr 98.2 3.4E-08 7.3E-13 108.5 -7.3 125 208-340 166-291 (1096)
50 KOG2982 Uncharacterized conser 98.1 1.9E-06 4.1E-11 85.3 4.1 192 252-465 69-264 (418)
51 COG5238 RNA1 Ran GTPase-activa 98.1 8.1E-07 1.8E-11 86.7 1.2 115 201-315 87-227 (388)
52 KOG1859 Leucine-rich repeat pr 98.1 8.6E-08 1.9E-12 105.4 -7.4 196 230-440 84-292 (1096)
53 COG5238 RNA1 Ran GTPase-activa 98.0 1.4E-06 3.1E-11 85.0 1.3 249 101-366 30-317 (388)
54 KOG4341 F-box protein containi 98.0 4.8E-07 1E-11 93.8 -2.5 303 152-481 138-457 (483)
55 PRK15386 type III secretion pr 97.8 6.3E-05 1.4E-09 80.7 8.9 77 593-683 48-124 (426)
56 KOG4579 Leucine-rich repeat (L 97.7 3.7E-06 8E-11 73.7 -1.4 60 747-808 77-136 (177)
57 PF12799 LRR_4: Leucine Rich r 97.7 2.6E-05 5.6E-10 55.5 2.5 17 791-807 20-36 (44)
58 PF12799 LRR_4: Leucine Rich r 97.6 4.7E-05 1E-09 54.1 2.9 37 748-785 2-38 (44)
59 KOG1644 U2-associated snRNP A' 97.5 0.00015 3.3E-09 68.3 6.0 129 551-683 22-152 (233)
60 KOG3665 ZYG-1-like serine/thre 97.5 6.4E-05 1.4E-09 87.8 4.0 106 152-264 122-230 (699)
61 KOG3665 ZYG-1-like serine/thre 97.5 3.9E-05 8.5E-10 89.5 2.1 135 127-269 122-265 (699)
62 PRK15386 type III secretion pr 97.5 0.00031 6.7E-09 75.5 8.5 55 399-460 49-104 (426)
63 KOG1644 U2-associated snRNP A' 97.3 0.00056 1.2E-08 64.7 6.1 84 255-341 43-126 (233)
64 KOG2739 Leucine-rich acidic nu 96.6 0.0013 2.9E-08 65.0 2.9 67 374-440 63-129 (260)
65 KOG1947 Leucine rich repeat pr 96.6 0.00076 1.6E-08 77.7 1.1 110 205-314 187-307 (482)
66 PF13306 LRR_5: Leucine rich r 96.5 0.0058 1.3E-07 55.8 6.3 103 544-652 8-110 (129)
67 KOG1947 Leucine rich repeat pr 96.5 0.00066 1.4E-08 78.2 -0.4 63 228-290 241-307 (482)
68 KOG2739 Leucine-rich acidic nu 96.3 0.0027 5.8E-08 63.0 2.9 36 374-409 114-150 (260)
69 PF13306 LRR_5: Leucine rich r 96.3 0.024 5.2E-07 51.7 9.2 117 525-648 13-129 (129)
70 KOG2123 Uncharacterized conser 96.0 0.00044 9.4E-09 68.4 -4.4 83 230-316 19-102 (388)
71 KOG2123 Uncharacterized conser 95.7 0.00064 1.4E-08 67.3 -4.2 63 300-366 39-102 (388)
72 PF00560 LRR_1: Leucine Rich R 95.4 0.0066 1.4E-07 35.8 0.8 12 797-808 2-13 (22)
73 PF00560 LRR_1: Leucine Rich R 95.2 0.0069 1.5E-07 35.7 0.6 19 773-792 2-20 (22)
74 KOG4308 LRR-containing protein 93.1 0.0014 3E-08 73.4 -10.0 65 250-314 111-184 (478)
75 KOG4308 LRR-containing protein 91.2 0.0049 1.1E-07 69.1 -8.6 186 129-316 89-304 (478)
76 KOG3864 Uncharacterized conser 87.5 0.1 2.2E-06 49.9 -1.5 82 278-359 101-183 (221)
77 smart00369 LRR_TYP Leucine-ric 86.8 0.5 1.1E-05 29.0 1.8 14 795-808 2-15 (26)
78 smart00370 LRR Leucine-rich re 86.8 0.5 1.1E-05 29.0 1.8 14 795-808 2-15 (26)
79 KOG0473 Leucine-rich repeat pr 86.8 0.032 6.9E-07 54.2 -5.3 83 747-832 42-124 (326)
80 PF13504 LRR_7: Leucine rich r 86.4 0.44 9.5E-06 25.9 1.2 12 672-683 2-13 (17)
81 KOG0473 Leucine-rich repeat pr 85.4 0.034 7.4E-07 54.0 -5.8 82 100-187 41-122 (326)
82 smart00370 LRR Leucine-rich re 83.9 0.74 1.6E-05 28.2 1.6 22 770-791 1-22 (26)
83 smart00369 LRR_TYP Leucine-ric 83.9 0.74 1.6E-05 28.2 1.6 22 770-791 1-22 (26)
84 PF13516 LRR_6: Leucine Rich r 82.6 0.32 6.9E-06 29.2 -0.4 14 796-809 3-16 (24)
85 KOG3864 Uncharacterized conser 75.6 0.72 1.6E-05 44.3 -0.6 40 670-709 150-189 (221)
86 KOG4242 Predicted myosin-I-bin 75.2 11 0.00023 41.3 7.8 59 749-807 415-480 (553)
87 smart00364 LRR_BAC Leucine-ric 71.3 2.5 5.5E-05 25.9 1.2 17 820-837 3-19 (26)
88 smart00365 LRR_SD22 Leucine-ri 69.1 3.9 8.5E-05 25.2 1.7 15 794-808 1-15 (26)
89 KOG4242 Predicted myosin-I-bin 62.9 40 0.00087 37.1 8.9 35 377-411 355-389 (553)
90 smart00368 LRR_RI Leucine rich 51.5 11 0.00024 23.5 1.6 14 795-808 2-15 (28)
91 KOG3763 mRNA export factor TAP 30.6 21 0.00045 40.1 0.7 13 68-80 28-40 (585)
92 smart00367 LRR_CC Leucine-rich 25.4 48 0.001 20.1 1.4 11 152-162 2-12 (26)
93 KOG3763 mRNA export factor TAP 23.9 45 0.00098 37.6 1.8 14 352-365 218-231 (585)
94 TIGR00864 PCC polycystin catio 22.9 45 0.00098 45.3 1.8 32 753-784 1-32 (2740)
95 TIGR00864 PCC polycystin catio 20.8 56 0.0012 44.4 2.0 34 777-810 1-34 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.5e-70 Score=678.90 Aligned_cols=584 Identities=36% Similarity=0.582 Sum_probs=423.0
Q ss_pred CHHHHHHHHHhhhcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCccccceEecCCCCcEEEEEcCCCccccccc
Q 040113 39 HDDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKPEEGNIDCCSWDGVECSENTGHVMKLDLSNSCLYGSIN 118 (887)
Q Consensus 39 ~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~ 118 (887)
.++|++||++||+++.++.+ .+.+|.. ..+||.|.||+|+.. ++|+.|+|+++.+.|.++
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~----------------~~~~w~~---~~~~c~w~gv~c~~~-~~v~~L~L~~~~i~~~~~ 86 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLK----------------YLSNWNS---SADVCLWQGITCNNS-SRVVSIDLSGKNISGKIS 86 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcc----------------cCCCCCC---CCCCCcCcceecCCC-CcEEEEEecCCCccccCC
Confidence 35789999999999865433 5789975 578999999999864 699999999999988876
Q ss_pred CCcccccCCCCCeEECCCCCCCCCCCCcccc-CCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCC
Q 040113 119 SSSSLFKLVHLEWLNLAFNDFKSSEIPSEII-NLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPN 197 (887)
Q Consensus 119 ~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~-~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~ 197 (887)
. .+..+++|++|+|++|++.+. +|..+. .+++|++|+|++|.+.+.+|. +.+++|++|++++|.
T Consensus 87 ~--~~~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~---------- 151 (968)
T PLN00113 87 S--AIFRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNM---------- 151 (968)
T ss_pred h--HHhCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCc----------
Confidence 5 788889999999999888765 776654 888888888888888877774 345566666666554
Q ss_pred hHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCC
Q 040113 198 FANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNL 277 (887)
Q Consensus 198 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 277 (887)
+.+.+|..++.+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++++
T Consensus 152 --------------------~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 211 (968)
T PLN00113 152 --------------------LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM 211 (968)
T ss_pred --------------------ccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCc
Confidence 444445555555555555555555555555555555566666666665555555566666
Q ss_pred CCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEE
Q 040113 278 HSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVL 357 (887)
Q Consensus 278 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 357 (887)
++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|.. ++++++|+.|++++|.+.+.+|..+..+++|++|
T Consensus 212 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 289 (968)
T PLN00113 212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS--LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL 289 (968)
T ss_pred CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh--HhCCCCCCEEECcCCeeeccCchhHhhccCcCEE
Confidence 66666666666666556666666666666666666666555555 5566666666666666666666666666666666
Q ss_pred EccCCcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCC
Q 040113 358 AIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSC 437 (887)
Q Consensus 358 ~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~ 437 (887)
++++|.+.+.+|..+..+++|++|++++|.+.+..+..
T Consensus 290 ~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~------------------------------------------ 327 (968)
T PLN00113 290 DLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA------------------------------------------ 327 (968)
T ss_pred ECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh------------------------------------------
Confidence 66666666666666667777777777777665443322
Q ss_pred CCcccChhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCccccc
Q 040113 438 NLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQG 517 (887)
Q Consensus 438 ~l~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~ 517 (887)
+..+++|+.|++++|.+.+.+|..
T Consensus 328 --------~~~l~~L~~L~L~~n~l~~~~p~~------------------------------------------------ 351 (968)
T PLN00113 328 --------LTSLPRLQVLQLWSNKFSGEIPKN------------------------------------------------ 351 (968)
T ss_pred --------HhcCCCCCEEECcCCCCcCcCChH------------------------------------------------
Confidence 223333444444444433333322
Q ss_pred CCCCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCC
Q 040113 518 PLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKES 597 (887)
Q Consensus 518 ~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~ 597 (887)
+..+++|+.|++++|.+++.+|..+.... +|+.|++++|++.+.+|..+..++
T Consensus 352 --------------------------l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~-~L~~L~l~~n~l~~~~p~~~~~~~ 404 (968)
T PLN00113 352 --------------------------LGKHNNLTVLDLSTNNLTGEIPEGLCSSG-NLFKLILFSNSLEGEIPKSLGACR 404 (968)
T ss_pred --------------------------HhCCCCCcEEECCCCeeEeeCChhHhCcC-CCCEEECcCCEecccCCHHHhCCC
Confidence 33344455555555555555555555544 466666666666666666666666
Q ss_pred cccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEE
Q 040113 598 RLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIID 677 (887)
Q Consensus 598 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 677 (887)
+|+.|++++|++++..|..+.+++.|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|... ..++|+.|+
T Consensus 405 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~---~~~~L~~L~ 481 (968)
T PLN00113 405 SLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF---GSKRLENLD 481 (968)
T ss_pred CCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc---ccccceEEE
Confidence 77777777777777777777777777777777777777777777777778888888887777766543 357889999
Q ss_pred cCCCcCcccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecC
Q 040113 678 LSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSN 757 (887)
Q Consensus 678 Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N 757 (887)
+++|++++.+|.. +.. .+.|+.|+|++|
T Consensus 482 ls~n~l~~~~~~~-~~~---------------------------------------------------l~~L~~L~Ls~N 509 (968)
T PLN00113 482 LSRNQFSGAVPRK-LGS---------------------------------------------------LSELMQLKLSEN 509 (968)
T ss_pred CcCCccCCccChh-hhh---------------------------------------------------hhccCEEECcCC
Confidence 9999998888754 111 356889999999
Q ss_pred cCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccccCCC
Q 040113 758 RFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQ 837 (887)
Q Consensus 758 ~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g~iP~ 837 (887)
++++.+|..++++++|++|+|++|.+++.+|..|+++++|+.|||++|+++|.+|..+..+++|++|++++|+++|.+|.
T Consensus 510 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 510 KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred cceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCccccccccCCCcCCCCCC
Q 040113 838 GRQFATFDNSSFESNSGLCGRP 859 (887)
Q Consensus 838 ~~~~~~~~~~~~~~n~~lcg~~ 859 (887)
.++|.++...+|.||+++||.+
T Consensus 590 ~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 590 TGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred cchhcccChhhhcCCccccCCc
Confidence 9999999999999999999865
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.1e-55 Score=546.57 Aligned_cols=515 Identities=35% Similarity=0.537 Sum_probs=379.0
Q ss_pred CCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhc-CCCCCCEEEcccCCCCCccccccCCCC
Q 040113 176 VNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLA-NLSSLTFLSLHSCGLQGRIQSSLGNLS 254 (887)
Q Consensus 176 ~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~ 254 (887)
.+++.|++++|.+. +.++..+..+++|++|++++|++.+.+|..+. .+++|++|++++|.+.+.+|. +.++
T Consensus 69 ~~v~~L~L~~~~i~------~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~ 140 (968)
T PLN00113 69 SRVVSIDLSGKNIS------GKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIP 140 (968)
T ss_pred CcEEEEEecCCCcc------ccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccC
Confidence 35666777666532 22345556666666666666666655554433 556666666666666555443 3455
Q ss_pred CCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEE
Q 040113 255 KLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLD 334 (887)
Q Consensus 255 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 334 (887)
+|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|.. ++++++|+.|+
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~ 218 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE--LGQMKSLKWIY 218 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH--HcCcCCccEEE
Confidence 5666666666655555555555666666666666555555555555555666666555555555544 55555555555
Q ss_pred ccCCCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcc
Q 040113 335 FTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWL 414 (887)
Q Consensus 335 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i 414 (887)
+++|.+.+.+|..++.+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+..
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~---------------------- 276 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI---------------------- 276 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccC----------------------
Confidence 5555555555555555555555555555555555555555555555555555444332
Q ss_pred cccccccCCCCCCCeeEEeeCCCCCcccChhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCcccc
Q 040113 415 SLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQ 494 (887)
Q Consensus 415 ~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 494 (887)
|..+..+++|+.|++++|.+.+.+|.++.. +++|+.|++++|.+
T Consensus 277 ----------------------------p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~--l~~L~~L~l~~n~~------ 320 (968)
T PLN00113 277 ----------------------------PPSIFSLQKLISLDLSDNSLSGEIPELVIQ--LQNLEILHLFSNNF------ 320 (968)
T ss_pred ----------------------------chhHhhccCcCEEECcCCeeccCCChhHcC--CCCCcEEECCCCcc------
Confidence 344555666667777777776666666544 55555555444433
Q ss_pred ccccCCccccccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCc
Q 040113 495 LVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDK 574 (887)
Q Consensus 495 ~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~ 574 (887)
.+.+|..+..+++|+.|++++|.+++.+|..++.+. +
T Consensus 321 ------------------------------------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~-~ 357 (968)
T PLN00113 321 ------------------------------------------TGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN-N 357 (968)
T ss_pred ------------------------------------------CCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCC-C
Confidence 334556678889999999999999999999999988 7
Q ss_pred ceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccC
Q 040113 575 LSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQS 654 (887)
Q Consensus 575 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 654 (887)
|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++++..|..+..+++|+.|++++
T Consensus 358 L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 437 (968)
T PLN00113 358 LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISN 437 (968)
T ss_pred CcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeee
Q 040113 655 NKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMN 734 (887)
Q Consensus 655 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (887)
|++.+.++... ..+++|+.|++++|++.+.+|... .
T Consensus 438 N~l~~~~~~~~--~~l~~L~~L~L~~n~~~~~~p~~~-~----------------------------------------- 473 (968)
T PLN00113 438 NNLQGRINSRK--WDMPSLQMLSLARNKFFGGLPDSF-G----------------------------------------- 473 (968)
T ss_pred CcccCccChhh--ccCCCCcEEECcCceeeeecCccc-c-----------------------------------------
Confidence 99999887665 678999999999999998877431 0
Q ss_pred eccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCcc
Q 040113 735 NKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQ 814 (887)
Q Consensus 735 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~ 814 (887)
...|+.|++++|++++.+|..+.++++|+.|+|++|++++.+|..++++++|++|+|++|+++|.+|..
T Consensus 474 -----------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 542 (968)
T PLN00113 474 -----------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS 542 (968)
T ss_pred -----------cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChh
Confidence 246899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCeeecccCcccccCCCC-CcCccccccccCCCcCCC
Q 040113 815 LVELTFLEFFNVSDNYLTGPIPQG-RQFATFDNSSFESNSGLC 856 (887)
Q Consensus 815 l~~L~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~~n~~lc 856 (887)
++.+++|++|++++|+++|.+|.. ..+..+....+.+|...+
T Consensus 543 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 543 FSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred HhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 999999999999999999999975 223334444555665443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-36 Score=314.23 Aligned_cols=367 Identities=27% Similarity=0.319 Sum_probs=228.4
Q ss_pred CCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEcc
Q 040113 231 SLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLS 310 (887)
Q Consensus 231 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 310 (887)
.-+.|++++|++....+..|.++++|+.+++..|.++ .+|...+...+|+.|+|.+|.|...-.+.++.++.|+.|||+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 4456777777777777777777777777777777775 566655555668888888888877777777778888888888
Q ss_pred CCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCCCCcc
Q 040113 311 FNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRG 390 (887)
Q Consensus 311 ~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~ 390 (887)
.|.++ .++... +..-.++++|+|++|.|+......|..+.+|..|.|++|+++...+..|.++++|+.|+|..|++..
T Consensus 158 rN~is-~i~~~s-fp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 158 RNLIS-EIPKPS-FPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hchhh-cccCCC-CCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence 88777 444321 4444678888888888877777778888888888888888886666677778888888888887765
Q ss_pred ccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCcccChhhhcCCcccEEecccCcccCCCCccc
Q 040113 391 TMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWL 470 (887)
Q Consensus 391 ~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~ 470 (887)
..... |.++++|+.|.+..|.|..+.. ..|-.+.++++|+|+.|+++..-..|+
T Consensus 236 ve~lt--FqgL~Sl~nlklqrN~I~kL~D------------------------G~Fy~l~kme~l~L~~N~l~~vn~g~l 289 (873)
T KOG4194|consen 236 VEGLT--FQGLPSLQNLKLQRNDISKLDD------------------------GAFYGLEKMEHLNLETNRLQAVNEGWL 289 (873)
T ss_pred ehhhh--hcCchhhhhhhhhhcCcccccC------------------------cceeeecccceeecccchhhhhhcccc
Confidence 44444 6777777777777776655542 234455666777777777766666666
Q ss_pred cccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCcCCC
Q 040113 471 LDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSL 550 (887)
Q Consensus 471 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L 550 (887)
+. +++|++|++|+|.+..+....+.. .+++.+|+++.|++...-+..|..+..|
T Consensus 290 fg--Lt~L~~L~lS~NaI~rih~d~Wsf------------------------tqkL~~LdLs~N~i~~l~~~sf~~L~~L 343 (873)
T KOG4194|consen 290 FG--LTSLEQLDLSYNAIQRIHIDSWSF------------------------TQKLKELDLSSNRITRLDEGSFRVLSQL 343 (873)
T ss_pred cc--cchhhhhccchhhhheeecchhhh------------------------cccceeEeccccccccCChhHHHHHHHh
Confidence 65 666666666666666554332110 1122222222223333333444455555
Q ss_pred CeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCc---cccCCCcccEEEccCCeeeeeCCccccCCCCCcEEe
Q 040113 551 EILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPN---TFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLD 627 (887)
Q Consensus 551 ~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 627 (887)
++|.|++|.++...-..|..+. +|+.|||++|.+++.+.+ .|..+++|+.|++.+|++..+...+|.++..|+.|+
T Consensus 344 e~LnLs~Nsi~~l~e~af~~ls-sL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~Ld 422 (873)
T KOG4194|consen 344 EELNLSHNSIDHLAEGAFVGLS-SLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLD 422 (873)
T ss_pred hhhcccccchHHHHhhHHHHhh-hhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceec
Confidence 5555555555544444444444 455555555555544432 345555555555555555544445555555555555
Q ss_pred CCCCcCCCCCCccccCCCCCCEEEccC
Q 040113 628 IGDNQIRDIFPSWLGTLPNLTVLILQS 654 (887)
Q Consensus 628 L~~N~l~~~~~~~~~~l~~L~~L~L~~ 654 (887)
|.+|.|..+-|.+|..+ .|+.|.+..
T Consensus 423 L~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 423 LGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred CCCCcceeecccccccc-hhhhhhhcc
Confidence 55555555555555555 555554433
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=4.6e-39 Score=322.03 Aligned_cols=478 Identities=31% Similarity=0.386 Sum_probs=378.2
Q ss_pred EEEEEcCCCcccccccCCcccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEE
Q 040113 103 VMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLD 182 (887)
Q Consensus 103 v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~ 182 (887)
...+++++|.+.-.. + ++.++..|.+|++++|++.. +|++++.+..++.|+.++|++ ..+|..++.+.+|++|+
T Consensus 47 l~~lils~N~l~~l~-~--dl~nL~~l~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~l-s~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLR-E--DLKNLACLTVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKL-SELPEQIGSLISLVKLD 120 (565)
T ss_pred hhhhhhccCchhhcc-H--hhhcccceeEEEeccchhhh--CCHHHHHHHHHHHhhcccchH-hhccHHHhhhhhhhhhh
Confidence 568889998876432 2 78899999999999999984 899999999999999999998 57999999999999999
Q ss_pred ccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCc
Q 040113 183 LSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLS 262 (887)
Q Consensus 183 l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 262 (887)
.+.|.. ..++..++.+..|..++..+|+++. .|.++..+.+|..+++.+|.+....|..+. ++.|++||..
T Consensus 121 ~s~n~~-------~el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~ 191 (565)
T KOG0472|consen 121 CSSNEL-------KELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCN 191 (565)
T ss_pred ccccce-------eecCchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccc
Confidence 999984 4456788899999999999999874 577788999999999999999865555555 9999999999
Q ss_pred CCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCC
Q 040113 263 LNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSG 342 (887)
Q Consensus 263 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 342 (887)
.|.+. .+|+.++.+.+|+.|++..|.+. ..| .|..|..|++++++.|++. .+|.. ...+++++..||+.+|+++
T Consensus 192 ~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae-~~~~L~~l~vLDLRdNklk- 265 (565)
T KOG0472|consen 192 SNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAE-HLKHLNSLLVLDLRDNKLK- 265 (565)
T ss_pred hhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHH-Hhcccccceeeeccccccc-
Confidence 99874 88999999999999999999998 677 7999999999999999997 66655 2558999999999999998
Q ss_pred ccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCCCCccccchhhh---hcCCCCCCE----EEccCCccc
Q 040113 343 ELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFL---LVSLKNLEV----LSLSSNWLS 415 (887)
Q Consensus 343 ~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~---l~~l~~L~~----L~L~~n~i~ 415 (887)
..|+.+..+++|++||+++|.++ .+|..++++ .|+.|.+.+|.+...-..-.. -.-++.|+. =.++...-.
T Consensus 266 e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~ 343 (565)
T KOG0472|consen 266 EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGG 343 (565)
T ss_pred cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccc
Confidence 78999999999999999999998 578889999 999999999997643221100 000111111 001111000
Q ss_pred ccc--c-----ccCCCCCCCeeEEeeCCCCCcccChhhhcCCc---ccEEecccCcccCCCCccccccCCCCCcEEEccC
Q 040113 416 LLT--K-----VTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHH---LMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSH 485 (887)
Q Consensus 416 ~~~--~-----~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~---L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~ 485 (887)
... . .+........+.+++++-.++.+|+.+..... ...++++.|++. .+|..+.. +..+
T Consensus 344 ~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~--lkel------- 413 (565)
T KOG0472|consen 344 TETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVE--LKEL------- 413 (565)
T ss_pred ccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHH--HHHH-------
Confidence 000 0 01111344677888999899999987655444 789999999997 66765543 2211
Q ss_pred CcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCC
Q 040113 486 NLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLP 565 (887)
Q Consensus 486 n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 565 (887)
...+.++ |+..+.+|..++.+++|..|++++|-+. .+|
T Consensus 414 -------------------vT~l~ls----------------------nn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP 451 (565)
T KOG0472|consen 414 -------------------VTDLVLS----------------------NNKISFVPLELSQLQKLTFLDLSNNLLN-DLP 451 (565)
T ss_pred -------------------HHHHHhh----------------------cCccccchHHHHhhhcceeeecccchhh-hcc
Confidence 1112222 2233466777888999999999998886 788
Q ss_pred CcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCC
Q 040113 566 RCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLP 645 (887)
Q Consensus 566 ~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 645 (887)
..++.+. .|+.|+++.|++. .+|.....+..++.+-.++|++....|..+.++.+|.+|||.+|.+..+ |..+++++
T Consensus 452 ~e~~~lv-~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~I-Pp~Lgnmt 528 (565)
T KOG0472|consen 452 EEMGSLV-RLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQI-PPILGNMT 528 (565)
T ss_pred hhhhhhh-hhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhC-Chhhcccc
Confidence 8888888 6999999999885 6677777778888888888999977777799999999999999999866 67899999
Q ss_pred CCCEEEccCCccc
Q 040113 646 NLTVLILQSNKFY 658 (887)
Q Consensus 646 ~L~~L~L~~N~l~ 658 (887)
+|++|++.+|+|.
T Consensus 529 nL~hLeL~gNpfr 541 (565)
T KOG0472|consen 529 NLRHLELDGNPFR 541 (565)
T ss_pred ceeEEEecCCccC
Confidence 9999999999987
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.2e-35 Score=306.38 Aligned_cols=368 Identities=25% Similarity=0.278 Sum_probs=223.5
Q ss_pred CEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEcc
Q 040113 281 KKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIG 360 (887)
Q Consensus 281 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 360 (887)
+.|++++|.+....+..|.++++|+++++..|.++ .+|.. .+...+|+.|+|.+|.|+......+..++.|+.|||+
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f--~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRF--GHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccc--cccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 45666666666555666666666666666666665 55542 2333346666666666665555556666666666666
Q ss_pred CCcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCc
Q 040113 361 RCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLI 440 (887)
Q Consensus 361 ~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~ 440 (887)
.|.|+..-...|..-.++++|+|++|.++...... |..+.+|..|.|+.|+++.++
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~--F~~lnsL~tlkLsrNrittLp---------------------- 213 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGH--FDSLNSLLTLKLSRNRITTLP---------------------- 213 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeecccccccccccc--ccccchheeeecccCcccccC----------------------
Confidence 66666444444555556666666666665444333 344444444444444443333
Q ss_pred ccChhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCC
Q 040113 441 EFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLP 520 (887)
Q Consensus 441 ~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~ 520 (887)
+..|..+++|+.|+|..|++.- -+++
T Consensus 214 --~r~Fk~L~~L~~LdLnrN~iri--ve~l-------------------------------------------------- 239 (873)
T KOG4194|consen 214 --QRSFKRLPKLESLDLNRNRIRI--VEGL-------------------------------------------------- 239 (873)
T ss_pred --HHHhhhcchhhhhhccccceee--ehhh--------------------------------------------------
Confidence 1223445555555555555431 1111
Q ss_pred CCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCccc
Q 040113 521 VPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLG 600 (887)
Q Consensus 521 ~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 600 (887)
.|..+++|+.|.|..|.++..-...|..+. +++.|+|+.|++...-.+++.+++.|+
T Consensus 240 ----------------------tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~-kme~l~L~~N~l~~vn~g~lfgLt~L~ 296 (873)
T KOG4194|consen 240 ----------------------TFQGLPSLQNLKLQRNDISKLDDGAFYGLE-KMEHLNLETNRLQAVNEGWLFGLTSLE 296 (873)
T ss_pred ----------------------hhcCchhhhhhhhhhcCcccccCcceeeec-ccceeecccchhhhhhcccccccchhh
Confidence 244455556666666666555555555555 466666666666655556666666777
Q ss_pred EEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCC
Q 040113 601 MIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSN 680 (887)
Q Consensus 601 ~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~ 680 (887)
.|++|+|.|..+.++++.-+++|++|+|++|+|+...+..|..+..|++|+|++|.+..+-...+ ..+++|++|||++
T Consensus 297 ~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af--~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 297 QLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF--VGLSSLHKLDLRS 374 (873)
T ss_pred hhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH--HHhhhhhhhcCcC
Confidence 77777777776666667777777777777777777777777777777777777777665533333 5567777777777
Q ss_pred CcCcccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCC
Q 040113 681 NRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFD 760 (887)
Q Consensus 681 N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~ 760 (887)
|.+++.|.... . .|.+ +++|+.|+|.+|++.
T Consensus 375 N~ls~~IEDaa-~-----------------------------------------------~f~g-l~~LrkL~l~gNqlk 405 (873)
T KOG4194|consen 375 NELSWCIEDAA-V-----------------------------------------------AFNG-LPSLRKLRLTGNQLK 405 (873)
T ss_pred CeEEEEEecch-h-----------------------------------------------hhcc-chhhhheeecCceee
Confidence 77765554320 0 0111 456777888888887
Q ss_pred ccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCC
Q 040113 761 GMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN 804 (887)
Q Consensus 761 ~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~ 804 (887)
.+.-.+|..+.+|++|||.+|.|....|.+|..+ .|+.|.+..
T Consensus 406 ~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 406 SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred ecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 6666678888888888888888888888888877 777776644
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.8e-37 Score=309.33 Aligned_cols=485 Identities=30% Similarity=0.387 Sum_probs=383.6
Q ss_pred cccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHh
Q 040113 123 LFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLV 202 (887)
Q Consensus 123 l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~ 202 (887)
...-.-|+.|.+++|.+.. +-+.+.++..|.+|++.+|.++ .+|++++++..++.+++++|++ ..+|..+
T Consensus 41 wW~qv~l~~lils~N~l~~--l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~l-------s~lp~~i 110 (565)
T KOG0472|consen 41 WWEQVDLQKLILSHNDLEV--LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKL-------SELPEQI 110 (565)
T ss_pred hhhhcchhhhhhccCchhh--ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchH-------hhccHHH
Confidence 3344568889999999874 5667999999999999999984 7888999999999999999984 4568889
Q ss_pred hcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCE
Q 040113 203 EKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKK 282 (887)
Q Consensus 203 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 282 (887)
+.+.+|++|+.++|.+. ..+++++.+..|+.++..+|++. ..|+++.++.+|..+++.+|++....|..+. ++.|++
T Consensus 111 ~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ 187 (565)
T KOG0472|consen 111 GSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKH 187 (565)
T ss_pred hhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHh
Confidence 99999999999999987 45677899999999999999998 6788899999999999999999855555454 999999
Q ss_pred EEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCcccccc-CCCCCccEEEccC
Q 040113 283 LDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASI-GNLRSLEVLAIGR 361 (887)
Q Consensus 283 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~ 361 (887)
|+...|.+. .+|+.++.+.+|+.|++..|++. .+| + |.++..|+++.++.|++. .+|+.. .+++++..||+.+
T Consensus 188 ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-e--f~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRd 261 (565)
T KOG0472|consen 188 LDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-E--FPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRD 261 (565)
T ss_pred cccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-C--CCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccc
Confidence 999999987 78999999999999999999998 677 4 889999999999999997 556555 4899999999999
Q ss_pred CcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCC----CCCCe----eEEe
Q 040113 362 CNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNT----TSQKF----TVVG 433 (887)
Q Consensus 362 n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~----~~~~L----~~l~ 433 (887)
|++. .+|..+.-+.+|.+||+++|.+++..+ . ++++ .|+.|.+.+|++..+....... .+..| +.-.
T Consensus 262 Nklk-e~Pde~clLrsL~rLDlSNN~is~Lp~-s--Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dg 336 (565)
T KOG0472|consen 262 NKLK-EVPDEICLLRSLERLDLSNNDISSLPY-S--LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDG 336 (565)
T ss_pred cccc-cCchHHHHhhhhhhhcccCCccccCCc-c--cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCC
Confidence 9998 688999999999999999999987654 3 7888 9999999999976553221111 01111 1111
Q ss_pred eCCCCC---c--ccCh----hhhcCCcccEEecccCcccCCCCccccccCC-CCCcEEEccCCcccCccccccccCCccc
Q 040113 434 LRSCNL---I--EFPN----FLKNQHHLMLLDLSSNRIHGKIPSWLLDPST-QNLSALNLSHNLLTGFDQQLVVLPGGKR 503 (887)
Q Consensus 434 l~~~~l---~--~~~~----~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~~~~~~ 503 (887)
++...- + ..+. ......+.+.|++++-+++ .+|...+...- .-.+..++++|++.
T Consensus 337 lS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-------------- 401 (565)
T KOG0472|consen 337 LSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-------------- 401 (565)
T ss_pred CCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh--------------
Confidence 111111 0 1111 1233556788999988887 56766654111 11333444444433
Q ss_pred cccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCcCCCC-eEEcCCCccCCCCCCcccccCCcceEEecCC
Q 040113 504 FLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLE-ILVLSHNNLSGLLPRCLGSFSDKLSILDLRA 582 (887)
Q Consensus 504 ~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~ 582 (887)
++|..+..+..+. .+.+++|.++ -+|..+..++ +|..|++++
T Consensus 402 -----------------------------------elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~-kLt~L~L~N 444 (565)
T KOG0472|consen 402 -----------------------------------ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQ-KLTFLDLSN 444 (565)
T ss_pred -----------------------------------hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhh-cceeeeccc
Confidence 3444444444443 4566666664 8888899998 799999999
Q ss_pred CcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCC
Q 040113 583 NNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIR 662 (887)
Q Consensus 583 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 662 (887)
|-+. .+|..++.+..|+.|+++.|+|. ..|..+.....|+.+-.++|++....|..+.++.+|++|||.+|.+..+.|
T Consensus 445 N~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp 522 (565)
T KOG0472|consen 445 NLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPP 522 (565)
T ss_pred chhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCCh
Confidence 9886 56888889999999999999998 788888888889999999999999999889999999999999999987654
Q ss_pred CCccccCCCCCCEEEcCCCcCcccCChh
Q 040113 663 EPRIDCGFSKLRIIDLSNNRFTGKLPSK 690 (887)
Q Consensus 663 ~~~~~~~l~~L~~L~Ls~N~l~~~ip~~ 690 (887)
.- +++++|+.|++++|+|. .|..
T Consensus 523 ~L---gnmtnL~hLeL~gNpfr--~Pr~ 545 (565)
T KOG0472|consen 523 IL---GNMTNLRHLELDGNPFR--QPRH 545 (565)
T ss_pred hh---ccccceeEEEecCCccC--CCHH
Confidence 43 79999999999999997 5654
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=5.9e-35 Score=321.82 Aligned_cols=209 Identities=31% Similarity=0.383 Sum_probs=115.8
Q ss_pred EECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEE
Q 040113 157 LNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLS 236 (887)
Q Consensus 157 L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 236 (887)
+|++.+.+ ..||..+..-..++.|+++.|.. -...-+.+.+.-+|+.|+
T Consensus 3 vd~s~~~l-~~ip~~i~~~~~~~~ln~~~N~~------------------------------l~~pl~~~~~~v~L~~l~ 51 (1081)
T KOG0618|consen 3 VDASDEQL-ELIPEQILNNEALQILNLRRNSL------------------------------LSRPLEFVEKRVKLKSLD 51 (1081)
T ss_pred cccccccC-cccchhhccHHHHHhhhcccccc------------------------------ccCchHHhhheeeeEEee
Confidence 45666655 45666665544466666666642 111112222233355555
Q ss_pred cccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCC
Q 040113 237 LHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSG 316 (887)
Q Consensus 237 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 316 (887)
+++|.+. ..|..+..+.+|+.|+++.|.+. ..|....++.+|+++.|.+|.+. ..|..+..+.+|++|+++.|.+.
T Consensus 52 lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~- 127 (1081)
T KOG0618|consen 52 LSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG- 127 (1081)
T ss_pred ccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-
Confidence 5555544 45555556666666666666554 45555666666666666666665 56666666666666666666665
Q ss_pred CCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCCCCccccchhh
Q 040113 317 EFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDF 396 (887)
Q Consensus 317 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 396 (887)
.+|.. +..++.++.+..++|..... ++... ++.+++..|.+.+.++..+..++. .|+|.+|.+. ...
T Consensus 128 ~~Pl~--i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d--- 194 (1081)
T KOG0618|consen 128 PIPLV--IEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD--- 194 (1081)
T ss_pred CCchh--HHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh---
Confidence 55544 55566666666666622111 22221 566666666666666555555554 5677777665 211
Q ss_pred hhcCCCCCCEEEccCCcc
Q 040113 397 LLVSLKNLEVLSLSSNWL 414 (887)
Q Consensus 397 ~l~~l~~L~~L~L~~n~i 414 (887)
+..+++|+.+....|.+
T Consensus 195 -ls~~~~l~~l~c~rn~l 211 (1081)
T KOG0618|consen 195 -LSNLANLEVLHCERNQL 211 (1081)
T ss_pred -hhhccchhhhhhhhccc
Confidence 45556666666555533
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=1.4e-34 Score=318.89 Aligned_cols=512 Identities=28% Similarity=0.349 Sum_probs=268.6
Q ss_pred EECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEE
Q 040113 132 LNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETL 211 (887)
Q Consensus 132 L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L 211 (887)
+|++...+. .||..+-.-..++.|+++.|.+....-+.+.+..+|+.||+++|.+ ..+|..+..+.+|+.|
T Consensus 3 vd~s~~~l~--~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~-------~~fp~~it~l~~L~~l 73 (1081)
T KOG0618|consen 3 VDASDEQLE--LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQI-------SSFPIQITLLSHLRQL 73 (1081)
T ss_pred cccccccCc--ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeecccccc-------ccCCchhhhHHHHhhc
Confidence 344444444 2566666656677777777766433223344455577777776653 2233344444555555
Q ss_pred EccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCC
Q 040113 212 DLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLS 291 (887)
Q Consensus 212 ~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 291 (887)
+++.|.+.. .|.+..++.+|++|.|.+|.+. ..|..+..+++|++|++++|.+. .+|..+..++.++.+..++|...
T Consensus 74 n~s~n~i~~-vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~ 150 (1081)
T KOG0618|consen 74 NLSRNYIRS-VPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKI 150 (1081)
T ss_pred ccchhhHhh-Cchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhh
Confidence 555554432 2344555555555555555544 44555555555555555555553 44444555555555555555111
Q ss_pred CccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCCccCCcc
Q 040113 292 GELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSS 371 (887)
Q Consensus 292 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~ 371 (887)
.. ++... ++.+++..|.+.+ .++..+..+.. .|++.+|.+. . ..
T Consensus 151 ~~----lg~~~-ik~~~l~~n~l~~--------------------------~~~~~i~~l~~--~ldLr~N~~~-~--~d 194 (1081)
T KOG0618|consen 151 QR----LGQTS-IKKLDLRLNVLGG--------------------------SFLIDIYNLTH--QLDLRYNEME-V--LD 194 (1081)
T ss_pred hh----hcccc-chhhhhhhhhccc--------------------------chhcchhhhhe--eeecccchhh-h--hh
Confidence 11 11111 4444444444444 44444443333 3445554443 1 12
Q ss_pred ccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCcccChhhhcCCc
Q 040113 372 LRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHH 451 (887)
Q Consensus 372 l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~ 451 (887)
+..+.+|+.+....|++.... -..++|+.|+.+.|.+... .....+.++++++++.+.+..+|+|+..+.+
T Consensus 195 ls~~~~l~~l~c~rn~ls~l~------~~g~~l~~L~a~~n~l~~~---~~~p~p~nl~~~dis~n~l~~lp~wi~~~~n 265 (1081)
T KOG0618|consen 195 LSNLANLEVLHCERNQLSELE------ISGPSLTALYADHNPLTTL---DVHPVPLNLQYLDISHNNLSNLPEWIGACAN 265 (1081)
T ss_pred hhhccchhhhhhhhcccceEE------ecCcchheeeeccCcceee---ccccccccceeeecchhhhhcchHHHHhccc
Confidence 334445555555555443221 1234555555555544411 1122334444455555555555555555555
Q ss_pred ccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCcEEEc
Q 040113 452 LMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLV 531 (887)
Q Consensus 452 L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l 531 (887)
|+.+++.+|+++ .+|..
T Consensus 266 le~l~~n~N~l~-~lp~r-------------------------------------------------------------- 282 (1081)
T KOG0618|consen 266 LEALNANHNRLV-ALPLR-------------------------------------------------------------- 282 (1081)
T ss_pred ceEecccchhHH-hhHHH--------------------------------------------------------------
Confidence 555555555542 22222
Q ss_pred cCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCc-ccEEEccCCeee
Q 040113 532 SNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESR-LGMIDLSHNLFQ 610 (887)
Q Consensus 532 ~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~ 610 (887)
+....+|+.|++..|.+. .+|....++. +|+.|+|..|++....+..|..... |..|+.+.|++.
T Consensus 283 ------------i~~~~~L~~l~~~~nel~-yip~~le~~~-sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~ 348 (1081)
T KOG0618|consen 283 ------------ISRITSLVSLSAAYNELE-YIPPFLEGLK-SLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS 348 (1081)
T ss_pred ------------HhhhhhHHHHHhhhhhhh-hCCCcccccc-eeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc
Confidence 223334444444444443 3344444444 3555555555543322222222222 455555555555
Q ss_pred eeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChh
Q 040113 611 GRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSK 690 (887)
Q Consensus 611 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~ 690 (887)
......=...+.|+.|++.+|.++...-..+...++|++|+|++|++........ .++..|++|+||+|+++ .+|..
T Consensus 349 ~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~--~kle~LeeL~LSGNkL~-~Lp~t 425 (1081)
T KOG0618|consen 349 TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKL--RKLEELEELNLSGNKLT-TLPDT 425 (1081)
T ss_pred ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHH--hchHHhHHHhcccchhh-hhhHH
Confidence 3222222334567777777777777666667777777777777777765533332 56677777777777776 56633
Q ss_pred hhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcc
Q 040113 691 SFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANL 770 (887)
Q Consensus 691 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l 770 (887)
... ...|++|...+|++. ..| ++.++
T Consensus 426 -va~---------------------------------------------------~~~L~tL~ahsN~l~-~fP-e~~~l 451 (1081)
T KOG0618|consen 426 -VAN---------------------------------------------------LGRLHTLRAHSNQLL-SFP-ELAQL 451 (1081)
T ss_pred -HHh---------------------------------------------------hhhhHHHhhcCCcee-ech-hhhhc
Confidence 222 233556666677776 556 78888
Q ss_pred cCCCEEeCCCCcccc-cCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccccCCCCC
Q 040113 771 KGLQVLNLDNNNLQG-HIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGR 839 (887)
Q Consensus 771 ~~L~~L~Ls~N~l~~-~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g~iP~~~ 839 (887)
+.|+.+|+|.|+++. .+|..... ++|++|||++|.-.-..-+.|..+.++...++.-| .+|++.
T Consensus 452 ~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~----~~~d~~ 516 (1081)
T KOG0618|consen 452 PQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN----NTPDGN 516 (1081)
T ss_pred CcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC----CCCccc
Confidence 888888888888875 34443332 78888888888744344455566666666666555 566664
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=6.2e-32 Score=284.08 Aligned_cols=374 Identities=29% Similarity=0.421 Sum_probs=242.7
Q ss_pred CCCCCEEEccCCCCC-CCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEE
Q 040113 205 LSNLETLDLGYVSIR-STIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKL 283 (887)
Q Consensus 205 l~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 283 (887)
++-.+-.|+++|.++ +..|..+..+++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+..++.|+.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence 334455566666665 345666666666666666666655 45666666666666666666664 233445566666666
Q ss_pred EccCCCCCC-ccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCC
Q 040113 284 DLSINNLSG-ELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRC 362 (887)
Q Consensus 284 ~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 362 (887)
.+..|++.. -+|..+..+..|..|||+.|++. ..|.. +...+++-.|+|++|+|.......+.++..|-.|+|++|
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~--LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTN--LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhh-hcchh--hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 666666532 35555666666777777777666 55655 556666666777777666333334556666667777777
Q ss_pred cCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCccc
Q 040113 363 NFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEF 442 (887)
Q Consensus 363 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~ 442 (887)
++. .+|+.+..+..|++|+|++|.+.-..... +..+++|+.|.+++.+-+ +..+
T Consensus 161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ--LPsmtsL~vLhms~TqRT-----------------------l~N~ 214 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQ--LPSMTSLSVLHMSNTQRT-----------------------LDNI 214 (1255)
T ss_pred hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhc--Cccchhhhhhhcccccch-----------------------hhcC
Confidence 665 45666666777777777777654221111 333344444444443111 1257
Q ss_pred ChhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCCC
Q 040113 443 PNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVP 522 (887)
Q Consensus 443 ~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~ 522 (887)
|..+..+.+|..+|++.|.+. .+|+.+.. +++|+.|+||+|+++.....
T Consensus 215 Ptsld~l~NL~dvDlS~N~Lp-~vPecly~--l~~LrrLNLS~N~iteL~~~---------------------------- 263 (1255)
T KOG0444|consen 215 PTSLDDLHNLRDVDLSENNLP-IVPECLYK--LRNLRRLNLSGNKITELNMT---------------------------- 263 (1255)
T ss_pred CCchhhhhhhhhccccccCCC-cchHHHhh--hhhhheeccCcCceeeeecc----------------------------
Confidence 777888888888888888886 67777776 78888888888877764422
Q ss_pred CCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCccc-ccCCccccCCCcccE
Q 040113 523 PSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFF-GTIPNTFMKESRLGM 601 (887)
Q Consensus 523 ~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~ 601 (887)
.....+|+.|++|.|+++ .+|+++++++ .|+.|++.+|+++ .-+|..++.+.+|+.
T Consensus 264 ---------------------~~~W~~lEtLNlSrNQLt-~LP~avcKL~-kL~kLy~n~NkL~FeGiPSGIGKL~~Lev 320 (1255)
T KOG0444|consen 264 ---------------------EGEWENLETLNLSRNQLT-VLPDAVCKLT-KLTKLYANNNKLTFEGIPSGIGKLIQLEV 320 (1255)
T ss_pred ---------------------HHHHhhhhhhccccchhc-cchHHHhhhH-HHHHHHhccCcccccCCccchhhhhhhHH
Confidence 222345666777777766 6677777776 5777777777664 345667777777888
Q ss_pred EEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCc
Q 040113 602 IDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPR 665 (887)
Q Consensus 602 L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 665 (887)
+..++|++. .+|..+..|..|+.|.|+.|++... |+.+.-++.|++||+..|+-....|.+.
T Consensus 321 f~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTL-PeaIHlL~~l~vLDlreNpnLVMPPKP~ 382 (1255)
T KOG0444|consen 321 FHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITL-PEAIHLLPDLKVLDLRENPNLVMPPKPN 382 (1255)
T ss_pred HHhhccccc-cCchhhhhhHHHHHhcccccceeec-hhhhhhcCCcceeeccCCcCccCCCCcc
Confidence 888877776 7777888888888888888887765 7777788888888888887666655543
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=4e-31 Score=278.04 Aligned_cols=250 Identities=28% Similarity=0.393 Sum_probs=154.8
Q ss_pred CCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcC
Q 040113 126 LVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKL 205 (887)
Q Consensus 126 l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l 205 (887)
++..|-.|+++|.+++..+|.....++.++.|.|....+ ..+|..++.|.+|++|.+++|++..+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L-~~vPeEL~~lqkLEHLs~~HN~L~~v-------------- 70 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL-EQVPEELSRLQKLEHLSMAHNQLISV-------------- 70 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhh-hhChHHHHHHhhhhhhhhhhhhhHhh--------------
Confidence 445566677777777666777777777777777777666 46677777777777777777762211
Q ss_pred CCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCC-ccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEE
Q 040113 206 SNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQG-RIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLD 284 (887)
Q Consensus 206 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 284 (887)
-..++.++.|+.+.+.+|++.. -+|..+-.+..|+.|||++|++. +.|..+..-+++-+|+
T Consensus 71 -----------------hGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLN 132 (1255)
T KOG0444|consen 71 -----------------HGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLN 132 (1255)
T ss_pred -----------------hhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEE
Confidence 1224445555555555555432 35556666667777777777664 5666666666777777
Q ss_pred ccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcC
Q 040113 285 LSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNF 364 (887)
Q Consensus 285 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i 364 (887)
|++|+|.......|.+++.|-.|||++|++. .+|.. +..+..|++|+|++|.+...--..+..+.+|+.|++++.+-
T Consensus 133 LS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ--~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR 209 (1255)
T KOG0444|consen 133 LSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQ--IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR 209 (1255)
T ss_pred cccCccccCCchHHHhhHhHhhhccccchhh-hcCHH--HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc
Confidence 7777776444445566777777777777776 45544 56667777777777766533333344456666777776543
Q ss_pred C-ccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcc
Q 040113 365 S-GRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWL 414 (887)
Q Consensus 365 ~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i 414 (887)
+ ..+|.++..+.+|..+|++.|.+... |.. +..+++|+.|+|++|.|
T Consensus 210 Tl~N~Ptsld~l~NL~dvDlS~N~Lp~v-Pec--ly~l~~LrrLNLS~N~i 257 (1255)
T KOG0444|consen 210 TLDNIPTSLDDLHNLRDVDLSENNLPIV-PEC--LYKLRNLRRLNLSGNKI 257 (1255)
T ss_pred hhhcCCCchhhhhhhhhccccccCCCcc-hHH--HhhhhhhheeccCcCce
Confidence 3 34666777777777777777766422 222 44455555555555533
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=8.9e-26 Score=226.94 Aligned_cols=226 Identities=23% Similarity=0.234 Sum_probs=152.8
Q ss_pred hhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCC
Q 040113 543 WLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSK 622 (887)
Q Consensus 543 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 622 (887)
.|..+++|++|++++|+++++-+.+|.+.. .++.|.|..|++.......|.++..|+.|+|.+|+|+...|.+|..+..
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a-~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~ 347 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAA-ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS 347 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhhhcchh-hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence 467788888888888888888888888777 6888888888887777777888888888888888888777777877777
Q ss_pred CcEEeCCCCcCCCC-CCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCc---ccCChhhhhccccc
Q 040113 623 LEFLDIGDNQIRDI-FPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFT---GKLPSKSFLCWNAM 698 (887)
Q Consensus 623 L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~---~~ip~~~~~~~~~l 698 (887)
|.+|.|-.|.+..- --.|++.. |..+...|..+- ..-..++.++++.+.+. ..-|++
T Consensus 348 l~~l~l~~Np~~CnC~l~wl~~W-------lr~~~~~~~~~C----q~p~~~~~~~~~dv~~~~~~c~~~ee-------- 408 (498)
T KOG4237|consen 348 LSTLNLLSNPFNCNCRLAWLGEW-------LRKKSVVGNPRC----QSPGFVRQIPISDVAFGDFRCGGPEE-------- 408 (498)
T ss_pred eeeeehccCcccCccchHHHHHH-------HhhCCCCCCCCC----CCCchhccccchhccccccccCCccc--------
Confidence 88887777766432 11222211 111121121111 01223455555554432 122221
Q ss_pred hhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeC
Q 040113 699 KIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNL 778 (887)
Q Consensus 699 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~L 778 (887)
..+...-.++...+..+.-+.+.+++....+.++|...++|++.+|.++ .+|.+ .+.+| .+|+
T Consensus 409 -------------~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~-~vp~~--~~~~l-~~dl 471 (498)
T KOG4237|consen 409 -------------LGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAIT-SVPDE--LLRSL-LLDL 471 (498)
T ss_pred -------------cCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccchhc-ccCHH--HHhhh-hccc
Confidence 0011112233344556667778888888888889999999999999998 77776 67788 8999
Q ss_pred CCCcccccCCccccCCCCCCEEeCCCC
Q 040113 779 DNNNLQGHIPSCLGNLTNLESLDLSNN 805 (887)
Q Consensus 779 s~N~l~~~~p~~l~~L~~L~~L~Ls~N 805 (887)
|+|+++..--..|.++++|.+|-||+|
T Consensus 472 s~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 472 SNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred ccCceehhhcccccchhhhheeEEecC
Confidence 999998877788889999999888876
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.3e-21 Score=243.55 Aligned_cols=360 Identities=23% Similarity=0.259 Sum_probs=270.7
Q ss_pred CcEEEEEcCCCcccccccCCcccccCCCCCeEECCCCCCCC-----CCCCccccCCC-CCCEEECCCCCCCccCCccccC
Q 040113 101 GHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKS-----SEIPSEIINLS-RLSYLNLSHSSFFGQIPSEILE 174 (887)
Q Consensus 101 ~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~-----~~lp~~~~~l~-~L~~L~Ls~n~~~~~~p~~l~~ 174 (887)
.+|+.+.+.-..+........++..+++|++|.+..+.... ..+|..+..++ +|+.|++.++.+ ..+|..+ .
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l-~~lP~~f-~ 609 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL-RCMPSNF-R 609 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC-CCCCCcC-C
Confidence 45666655433332211123368889999999997664321 23677777764 699999999887 6778776 5
Q ss_pred CCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCC
Q 040113 175 LVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLS 254 (887)
Q Consensus 175 l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 254 (887)
..+|+.|++.++.+.. ++..+..+++|+.|+++++.....+|. ++.+++|+.|++++|.....+|..+..++
T Consensus 610 ~~~L~~L~L~~s~l~~-------L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~ 681 (1153)
T PLN03210 610 PENLVKLQMQGSKLEK-------LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLN 681 (1153)
T ss_pred ccCCcEEECcCccccc-------cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccC
Confidence 7999999999998533 345567899999999998876666664 88899999999999987778899999999
Q ss_pred CCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEE
Q 040113 255 KLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLD 334 (887)
Q Consensus 255 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 334 (887)
+|++|++++|...+.+|..+ ++++|+.|++++|...+.+|.. ..+|++|++++|.+. .+|.. + .+++|+.|.
T Consensus 682 ~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~--~-~l~~L~~L~ 753 (1153)
T PLN03210 682 KLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSN--L-RLENLDELI 753 (1153)
T ss_pred CCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-ccccc--c-ccccccccc
Confidence 99999999987667788765 7899999999999876666653 468999999999986 66754 3 578888888
Q ss_pred ccCCCCC-------CccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEE
Q 040113 335 FTSNKFS-------GELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVL 407 (887)
Q Consensus 335 L~~n~l~-------~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L 407 (887)
+.++... ...+......++|+.|++++|...+.+|..++++++|+.|++++|...+..|.. ..+++|+.|
T Consensus 754 l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~---~~L~sL~~L 830 (1153)
T PLN03210 754 LCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG---INLESLESL 830 (1153)
T ss_pred ccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC---CCccccCEE
Confidence 8775421 111222334578999999999888889999999999999999998755555544 268899999
Q ss_pred EccCCcccccccccCCCCCCCeeEEeeCCCCCcccChhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCc
Q 040113 408 SLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNL 487 (887)
Q Consensus 408 ~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~ 487 (887)
++++|. .+..++. ...+++.|+++++.+..+|.++..+++|+.|++++|.-...+|..... +++|+.+++++|.
T Consensus 831 ~Ls~c~--~L~~~p~--~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~--L~~L~~L~l~~C~ 904 (1153)
T PLN03210 831 DLSGCS--RLRTFPD--ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISK--LKHLETVDFSDCG 904 (1153)
T ss_pred ECCCCC--ccccccc--cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCccccc--ccCCCeeecCCCc
Confidence 999983 2222221 246788899999988888988888899999999886554556655544 6677777776663
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=5.6e-21 Score=237.95 Aligned_cols=345 Identities=23% Similarity=0.302 Sum_probs=187.7
Q ss_pred ccCCCCCCcEEeCcCCC------CCCcchhhccCCC-CCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCch
Q 040113 249 SLGNLSKLLHLDLSLNE------LLGELPVSIGNLH-SLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWS 321 (887)
Q Consensus 249 ~l~~l~~L~~L~Ls~n~------l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 321 (887)
+|.++++|+.|.+..+. +...+|..+..++ +|+.|++.++.+. .+|..+ ...+|++|++.+|++. .++..
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~ 629 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDG 629 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccc
Confidence 34455555555554332 1122344444432 3566666655554 444444 3455666666666554 33333
Q ss_pred hhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCC
Q 040113 322 IVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSL 401 (887)
Q Consensus 322 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l 401 (887)
+..+++|+.|+++++...+.+|. ++.+++|++|++++|.....+|..+..+++|+.|++++|...+..|.. .++
T Consensus 630 --~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~---i~l 703 (1153)
T PLN03210 630 --VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG---INL 703 (1153)
T ss_pred --cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc---CCC
Confidence 44556666666665544334442 555566666666666555556666666666666666665433333332 145
Q ss_pred CCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCcccChhhhcCCcccEEecccCcccCCCCccccccCCCCCcEE
Q 040113 402 KNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSAL 481 (887)
Q Consensus 402 ~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L 481 (887)
++|+.|++++|. .+.. +|.. ..+|+.|++++|.+. .+|..+. +++|+.|
T Consensus 704 ~sL~~L~Lsgc~--~L~~----------------------~p~~---~~nL~~L~L~~n~i~-~lP~~~~---l~~L~~L 752 (1153)
T PLN03210 704 KSLYRLNLSGCS--RLKS----------------------FPDI---STNISWLDLDETAIE-EFPSNLR---LENLDEL 752 (1153)
T ss_pred CCCCEEeCCCCC--Cccc----------------------cccc---cCCcCeeecCCCccc-ccccccc---ccccccc
Confidence 566666666552 1111 1110 123444444444432 2332221 3445555
Q ss_pred EccCCcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccC
Q 040113 482 NLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLS 561 (887)
Q Consensus 482 ~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 561 (887)
++.++....+.... ..+.......+++++.|++++|...+.+|..++++++|+.|++++|...
T Consensus 753 ~l~~~~~~~l~~~~-----------------~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L 815 (1153)
T PLN03210 753 ILCEMKSEKLWERV-----------------QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINL 815 (1153)
T ss_pred cccccchhhccccc-----------------cccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCc
Confidence 54443221111000 0000000111345566666666666677778888888888888887655
Q ss_pred CCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccc
Q 040113 562 GLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWL 641 (887)
Q Consensus 562 ~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~ 641 (887)
+.+|..+ .++ +|+.|++++|.....+|.. ..+|+.|++++|.++ .+|..+..+++|+.|++++|+-...+|..+
T Consensus 816 ~~LP~~~-~L~-sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~ 889 (1153)
T PLN03210 816 ETLPTGI-NLE-SLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNI 889 (1153)
T ss_pred CeeCCCC-Ccc-ccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCccc
Confidence 5677665 455 6888888887655555542 356778888888877 567777788888888888754444456667
Q ss_pred cCCCCCCEEEccCCc
Q 040113 642 GTLPNLTVLILQSNK 656 (887)
Q Consensus 642 ~~l~~L~~L~L~~N~ 656 (887)
..+++|+.+++++|.
T Consensus 890 ~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 890 SKLKHLETVDFSDCG 904 (1153)
T ss_pred ccccCCCeeecCCCc
Confidence 777888888887775
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=1.1e-23 Score=212.00 Aligned_cols=275 Identities=23% Similarity=0.200 Sum_probs=174.8
Q ss_pred CCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccC-CCCCCccccCCChHHHhhcCCC
Q 040113 129 LEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSL-NSGYGLELQKPNFANLVEKLSN 207 (887)
Q Consensus 129 L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~-n~~~~l~~~~~~~~~~~~~l~~ 207 (887)
-..++|..|.|+.. -|..|+.+++||.||||+|.|+..-|++|..+++|..|-+.+ |+|+.+. ...|+++..
T Consensus 69 tveirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~------k~~F~gL~s 141 (498)
T KOG4237|consen 69 TVEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP------KGAFGGLSS 141 (498)
T ss_pred ceEEEeccCCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh------hhHhhhHHH
Confidence 44566667777653 345577777777777777777777777777777776665555 6655544 456777777
Q ss_pred CCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCC------------Ccchhhcc
Q 040113 208 LETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELL------------GELPVSIG 275 (887)
Q Consensus 208 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~------------~~~p~~l~ 275 (887)
|+.|.+.-|++.-...+.|..+++|..|.+.+|.+...-...+..+..++.+.+..|.+. ...|..++
T Consensus 142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets 221 (498)
T KOG4237|consen 142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS 221 (498)
T ss_pred HHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence 777777777777777777888888888888888776444446777778888777777632 11222333
Q ss_pred CCCCCCEEEccCCCCCCccchhhhCC-CCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCc
Q 040113 276 NLHSLKKLDLSINNLSGELPTSIQNL-VSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSL 354 (887)
Q Consensus 276 ~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 354 (887)
..+-..-..+.+.++....+..|... ..+..=-.+.+...+..|. ..|..+++|++|+|++|++++.-+.+|.....+
T Consensus 222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~-~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l 300 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPA-KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAEL 300 (498)
T ss_pred cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChH-HHHhhcccceEeccCCCccchhhhhhhcchhhh
Confidence 33333333344444443333333221 1111111223333333443 337777888888888888877777777777788
Q ss_pred cEEEccCCcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCc
Q 040113 355 EVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNW 413 (887)
Q Consensus 355 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~ 413 (887)
++|.|..|++...-...|.++..|+.|+|.+|+++...+.. |..+..|.+|.+-.|+
T Consensus 301 ~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~a--F~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 301 QELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGA--FQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccc--ccccceeeeeehccCc
Confidence 88888888776555566777777777777777777666655 6666777777776663
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=7.4e-21 Score=218.86 Aligned_cols=81 Identities=27% Similarity=0.386 Sum_probs=45.7
Q ss_pred ceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecc
Q 040113 748 ILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVS 827 (887)
Q Consensus 748 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls 827 (887)
.|+.|++++|.|++ +|.. .++|+.|++++|++++ +|..+ .+|+.|++++|+++ .+|..+.+++.|++|+++
T Consensus 383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 453 (788)
T ss_pred ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence 35556666666653 3332 2356666666666653 44322 34555666666665 456666666666666666
Q ss_pred cCcccccCCC
Q 040113 828 DNYLTGPIPQ 837 (887)
Q Consensus 828 ~N~l~g~iP~ 837 (887)
+|+|+|.+|+
T Consensus 454 ~N~Ls~~~~~ 463 (788)
T PRK15387 454 GNPLSERTLQ 463 (788)
T ss_pred CCCCCchHHH
Confidence 6666665553
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=4.4e-20 Score=212.53 Aligned_cols=187 Identities=28% Similarity=0.374 Sum_probs=118.7
Q ss_pred CCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeC
Q 040113 549 SLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDI 628 (887)
Q Consensus 549 ~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 628 (887)
+|+.|++++|+++ .+|.. +++|+.|++++|++++. |.. ...|+.|++++|++++ +|. + ..+|+.|+|
T Consensus 283 ~L~~L~Ls~N~Lt-~LP~~----p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~~-LP~-l--p~~Lq~LdL 349 (788)
T PRK15387 283 GLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLTS-LPT-L--PSGLQELSV 349 (788)
T ss_pred hcCEEECcCCccc-ccccc----ccccceeECCCCccccC-CCC---cccccccccccCcccc-ccc-c--ccccceEec
Confidence 4555666666655 23321 12466666666666542 221 2345566666666663 332 1 136777777
Q ss_pred CCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCccc
Q 040113 629 GDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKY 708 (887)
Q Consensus 629 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~ 708 (887)
++|+++++ |.. .++|+.|++++|++..+ |.. ..+|+.|++++|+++ .+|..
T Consensus 350 S~N~Ls~L-P~l---p~~L~~L~Ls~N~L~~L-P~l-----~~~L~~LdLs~N~Lt-~LP~l------------------ 400 (788)
T PRK15387 350 SDNQLASL-PTL---PSELYKLWAYNNRLTSL-PAL-----PSGLKELIVSGNRLT-SLPVL------------------ 400 (788)
T ss_pred CCCccCCC-CCC---CcccceehhhccccccC-ccc-----ccccceEEecCCccc-CCCCc------------------
Confidence 77777654 322 24566777777777653 221 246788888888776 34421
Q ss_pred cccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCC
Q 040113 709 LQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIP 788 (887)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p 788 (887)
+..|+.|++++|+|++ +|... .+|+.|++++|+++ .+|
T Consensus 401 -------------------------------------~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP 438 (788)
T PRK15387 401 -------------------------------------PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLP 438 (788)
T ss_pred -------------------------------------ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccC
Confidence 3457788888888874 56533 45778888888888 678
Q ss_pred ccccCCCCCCEEeCCCCcccccCCccccCCC
Q 040113 789 SCLGNLTNLESLDLSNNNFLGQIPQQLVELT 819 (887)
Q Consensus 789 ~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~ 819 (887)
..+.++++|+.|+|++|++++.+|..+..++
T Consensus 439 ~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~ 469 (788)
T PRK15387 439 ESLIHLSSETTVNLEGNPLSERTLQALREIT 469 (788)
T ss_pred hHHhhccCCCeEECCCCCCCchHHHHHHHHh
Confidence 8888888999999999999888888775543
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=8.8e-19 Score=203.49 Aligned_cols=183 Identities=25% Similarity=0.408 Sum_probs=97.8
Q ss_pred CCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeC
Q 040113 549 SLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDI 628 (887)
Q Consensus 549 ~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 628 (887)
+|+.|++++|.+. .+|..+. .+|+.|++++|+++. +|..+. .+|+.|++++|++++ +|..+. ++|+.|++
T Consensus 242 ~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~L 311 (754)
T PRK15370 242 TIQEMELSINRIT-ELPERLP---SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNV 311 (754)
T ss_pred cccEEECcCCccC-cCChhHh---CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHh
Confidence 3445555555544 3343332 135555555555542 333222 245555555555553 233222 34566666
Q ss_pred CCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCccc
Q 040113 629 GDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKY 708 (887)
Q Consensus 629 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~ 708 (887)
++|+++.. |..+ .++|+.|++++|.++++ |..+ .++|+.|++++|+++ .+|...
T Consensus 312 s~N~Lt~L-P~~l--~~sL~~L~Ls~N~Lt~L-P~~l----~~sL~~L~Ls~N~L~-~LP~~l----------------- 365 (754)
T PRK15370 312 QSNSLTAL-PETL--PPGLKTLEAGENALTSL-PASL----PPELQVLDVSKNQIT-VLPETL----------------- 365 (754)
T ss_pred cCCccccC-Cccc--cccceeccccCCccccC-Chhh----cCcccEEECCCCCCC-cCChhh-----------------
Confidence 66666543 3222 24566666666666553 2222 256777777777665 344321
Q ss_pred cccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCC
Q 040113 709 LQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIP 788 (887)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p 788 (887)
++.|+.|+|++|.++ .+|..+. ..|+.|++++|+++ .+|
T Consensus 366 -------------------------------------p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP 404 (754)
T PRK15370 366 -------------------------------------PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLP 404 (754)
T ss_pred -------------------------------------cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCc
Confidence 335667777777777 4455444 25777777777776 344
Q ss_pred cc----ccCCCCCCEEeCCCCccc
Q 040113 789 SC----LGNLTNLESLDLSNNNFL 808 (887)
Q Consensus 789 ~~----l~~L~~L~~L~Ls~N~l~ 808 (887)
.. ++.++.+..|+|.+|+++
T Consensus 405 ~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 405 ESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hhHHHHhhcCCCccEEEeeCCCcc
Confidence 33 334466777777777776
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=1.7e-18 Score=201.16 Aligned_cols=227 Identities=26% Similarity=0.434 Sum_probs=169.6
Q ss_pred CCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEE
Q 040113 524 SRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMID 603 (887)
Q Consensus 524 ~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 603 (887)
..+..|++++|++. .+|..+. ++|+.|++++|+++ .+|..+. .+|+.|+|++|++. .+|..+. ++|+.|+
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~ 268 (754)
T PRK15370 199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEMELSINRIT-ELPERLP--SALQSLD 268 (754)
T ss_pred cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEECcCCccC-cCChhHh--CCCCEEE
Confidence 34555555555555 3454443 58999999999988 5676543 37999999999987 4565553 5799999
Q ss_pred ccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcC
Q 040113 604 LSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRF 683 (887)
Q Consensus 604 Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 683 (887)
+++|+++ .+|..+. ++|+.|++++|++++. |..+. ++|+.|++++|+++.. |... .++|+.|++++|.+
T Consensus 269 Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~L-P~~lp--~sL~~L~Ls~N~Lt~L-P~~l----~~sL~~L~Ls~N~L 337 (754)
T PRK15370 269 LFHNKIS-CLPENLP--EELRYLSVYDNSIRTL-PAHLP--SGITHLNVQSNSLTAL-PETL----PPGLKTLEAGENAL 337 (754)
T ss_pred CcCCccC-ccccccC--CCCcEEECCCCccccC-cccch--hhHHHHHhcCCccccC-Cccc----cccceeccccCCcc
Confidence 9999998 4666554 5899999999999875 44332 4788999999998864 3322 36889999999988
Q ss_pred cccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccC
Q 040113 684 TGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMI 763 (887)
Q Consensus 684 ~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~i 763 (887)
++ +|.. ++++|+.|++++|+|+ .+
T Consensus 338 t~-LP~~------------------------------------------------------l~~sL~~L~Ls~N~L~-~L 361 (754)
T PRK15370 338 TS-LPAS------------------------------------------------------LPPELQVLDVSKNQIT-VL 361 (754)
T ss_pred cc-CChh------------------------------------------------------hcCcccEEECCCCCCC-cC
Confidence 73 5532 1457899999999998 57
Q ss_pred hhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccc----cCCCCCCeeecccCcccc
Q 040113 764 PTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQL----VELTFLEFFNVSDNYLTG 833 (887)
Q Consensus 764 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l----~~L~~L~~L~ls~N~l~g 833 (887)
|..+. +.|+.|+|++|+++ .+|..+. .+|+.|++++|+++ .+|..+ ..++.+..+++.+|+++.
T Consensus 362 P~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 362 PETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred Chhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 77664 68999999999999 5676654 47999999999998 455544 445788999999999873
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=9e-19 Score=189.99 Aligned_cols=281 Identities=23% Similarity=0.246 Sum_probs=146.1
Q ss_pred EECCCCCCCCCCCCccccCCCCCCEEECCCCCCCcc----CCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCC
Q 040113 132 LNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQ----IPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSN 207 (887)
Q Consensus 132 L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~ 207 (887)
|+|..+.+++...+..+..+.+|++|+++++.++.. ++..+...++|++|+++++.+.........++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 344444444333333444444555555555554321 3333444455555555555422101011223445555666
Q ss_pred CCEEEccCCCCCCCchhhhcCCCC---CCEEEcccCCCCC----ccccccCCC-CCCcEEeCcCCCCCCc----chhhcc
Q 040113 208 LETLDLGYVSIRSTIPHNLANLSS---LTFLSLHSCGLQG----RIQSSLGNL-SKLLHLDLSLNELLGE----LPVSIG 275 (887)
Q Consensus 208 L~~L~L~~n~~~~~~~~~l~~l~~---L~~L~L~~n~l~~----~~~~~l~~l-~~L~~L~Ls~n~l~~~----~p~~l~ 275 (887)
|++|++++|.+....+..+..+.+ |++|++++|.+.+ .+...+..+ ++|+.|++++|.+++. ++..+.
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 666666666665544444444433 7777777666652 222334455 6677777777766632 334455
Q ss_pred CCCCCCEEEccCCCCCCc----cchhhhCCCCCCEEEccCCcCCCCCCch--hhccCCCCccEEEccCCCCCCccccccC
Q 040113 276 NLHSLKKLDLSINNLSGE----LPTSIQNLVSLEELDLSFNKLSGEFPWS--IVIGNFTQLQSLDFTSNKFSGELHASIG 349 (887)
Q Consensus 276 ~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 349 (887)
.+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..... ..+..+++|++|++++|.+++.....+.
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~ 242 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA 242 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHH
Confidence 566677777777776632 2334445567777777777665322111 1144566677777777766643222221
Q ss_pred -----CCCCccEEEccCCcCCc----cCCccccCCCCCCEEEcCCCCCccccch--hhhhcCC-CCCCEEEccCC
Q 040113 350 -----NLRSLEVLAIGRCNFSG----RIPSSLRNLTQLITLDLSQNSYRGTMEL--DFLLVSL-KNLEVLSLSSN 412 (887)
Q Consensus 350 -----~l~~L~~L~L~~n~i~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~--~~~l~~l-~~L~~L~L~~n 412 (887)
..+.|++|++++|.++. .+...+..+++|+++++++|.+...... ...+... +.|+.+++.+|
T Consensus 243 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 243 SALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 13567777777776652 1233444556777777777776644211 1113333 56666666655
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=8e-18 Score=182.53 Aligned_cols=260 Identities=25% Similarity=0.257 Sum_probs=166.1
Q ss_pred EEECCCCCCC-ccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCC------CchhhhcC
Q 040113 156 YLNLSHSSFF-GQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRS------TIPHNLAN 228 (887)
Q Consensus 156 ~L~Ls~n~~~-~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~------~~~~~l~~ 228 (887)
.|+|..+.+. +..+..+..+.+|+.|+++++.+..-. ...++..+...+++++|+++++.+.+ .++..+..
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~--~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~ 79 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEA--AKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK 79 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHH--HHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh
Confidence 4677777776 344555667788999999988743211 12456667778889999998887762 23455667
Q ss_pred CCCCCEEEcccCCCCCccccccCCCCC---CcEEeCcCCCCCC----cchhhccCC-CCCCEEEccCCCCCCc----cch
Q 040113 229 LSSLTFLSLHSCGLQGRIQSSLGNLSK---LLHLDLSLNELLG----ELPVSIGNL-HSLKKLDLSINNLSGE----LPT 296 (887)
Q Consensus 229 l~~L~~L~L~~n~l~~~~~~~l~~l~~---L~~L~Ls~n~l~~----~~p~~l~~l-~~L~~L~L~~n~l~~~----~~~ 296 (887)
+++|++|++++|.+.+..+..+..+.+ |++|++++|.+.+ .+...+..+ ++|++|++++|.+++. ++.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 788888888888887655555544444 8888888888763 233445566 7888888888887743 334
Q ss_pred hhhCCCCCCEEEccCCcCCCCCCch--hhccCCCCccEEEccCCCCCCc----cccccCCCCCccEEEccCCcCCccCCc
Q 040113 297 SIQNLVSLEELDLSFNKLSGEFPWS--IVIGNFTQLQSLDFTSNKFSGE----LHASIGNLRSLEVLAIGRCNFSGRIPS 370 (887)
Q Consensus 297 ~l~~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~~ 370 (887)
.+..+++|++|++++|.+.+..... ..+..+++|++|++++|.+++. +...+..+++|++|++++|.+++....
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 5566777888888888776421111 0134456788888888877643 233455667777788877777643222
Q ss_pred ccc-----CCCCCCEEEcCCCCCc--cccchhhhhcCCCCCCEEEccCCccccc
Q 040113 371 SLR-----NLTQLITLDLSQNSYR--GTMELDFLLVSLKNLEVLSLSSNWLSLL 417 (887)
Q Consensus 371 ~l~-----~l~~L~~L~L~~n~l~--~~~~~~~~l~~l~~L~~L~L~~n~i~~~ 417 (887)
.+. ..+.|++|++++|.++ +.......+..+++|+++++++|.+...
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 211 2367777777777765 2222222355556677777777755543
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=1.5e-17 Score=148.82 Aligned_cols=163 Identities=29% Similarity=0.469 Sum_probs=120.7
Q ss_pred ccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHH
Q 040113 122 SLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANL 201 (887)
Q Consensus 122 ~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~ 201 (887)
.+..+.+++.|.|++|+++. +|+.|..+.+|+.|++++|++ ..+|.+++.+++|++|+++.|++
T Consensus 28 gLf~~s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnqi-e~lp~~issl~klr~lnvgmnrl------------- 91 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQI-EELPTSISSLPKLRILNVGMNRL------------- 91 (264)
T ss_pred cccchhhhhhhhcccCceee--cCCcHHHhhhhhhhhcccchh-hhcChhhhhchhhhheecchhhh-------------
Confidence 55666777788888888874 677788888888888888887 56787888888888888777762
Q ss_pred hhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCC-ccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCC
Q 040113 202 VEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQG-RIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSL 280 (887)
Q Consensus 202 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 280 (887)
...|..|+.++.|++|++..|.+.. .+|..|-.++.|+.|.++.|.+. .+|..++++++|
T Consensus 92 ------------------~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~l 152 (264)
T KOG0617|consen 92 ------------------NILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNL 152 (264)
T ss_pred ------------------hcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcce
Confidence 1345556666666666666666543 46667777777888888888774 677778888888
Q ss_pred CEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCch
Q 040113 281 KKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWS 321 (887)
Q Consensus 281 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 321 (887)
+.|.+.+|.+. .+|..++.++.|++|++.+|+++ .+|..
T Consensus 153 qil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppe 191 (264)
T KOG0617|consen 153 QILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPE 191 (264)
T ss_pred eEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChh
Confidence 88888888876 67788888888888888888887 45544
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=1.9e-16 Score=141.81 Aligned_cols=87 Identities=29% Similarity=0.608 Sum_probs=71.2
Q ss_pred CceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCC---CCe
Q 040113 747 DILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTF---LEF 823 (887)
Q Consensus 747 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~---L~~ 823 (887)
..|+-|+|++|.|. .+|..++++++||.|.+..|.+. .+|..++.|++|++|.+.+|+++ .+|..++++.- =++
T Consensus 127 ~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v 203 (264)
T KOG0617|consen 127 TTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQV 203 (264)
T ss_pred HHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHH
Confidence 34667788899887 78889999999999999999988 78999999999999999999998 56667777643 356
Q ss_pred eecccCcccccCC
Q 040113 824 FNVSDNYLTGPIP 836 (887)
Q Consensus 824 L~ls~N~l~g~iP 836 (887)
+.+.+|+...+|-
T Consensus 204 ~r~E~NPwv~pIa 216 (264)
T KOG0617|consen 204 MRMEENPWVNPIA 216 (264)
T ss_pred HhhhhCCCCChHH
Confidence 6777888765553
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.40 E-value=4.5e-13 Score=155.93 Aligned_cols=118 Identities=39% Similarity=0.703 Sum_probs=106.6
Q ss_pred ceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecc
Q 040113 748 ILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVS 827 (887)
Q Consensus 748 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls 827 (887)
.++.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|+.++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccCCCCC--cCccccccccCCCcCCCCCCCCCCCC
Q 040113 828 DNYLTGPIPQGR--QFATFDNSSFESNSGLCGRPLSRECE 865 (887)
Q Consensus 828 ~N~l~g~iP~~~--~~~~~~~~~~~~n~~lcg~~~~~~c~ 865 (887)
+|+++|.+|... .+.......+.||+++||.|-...|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999752 12233456789999999987656775
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.39 E-value=1.8e-12 Score=150.94 Aligned_cols=125 Identities=34% Similarity=0.484 Sum_probs=92.6
Q ss_pred CCHHHHHHHHHhhhcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCC----ccccceEecCC--C--CcEEEEEcC
Q 040113 38 CHDDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKPEEGNIDC----CSWDGVECSEN--T--GHVMKLDLS 109 (887)
Q Consensus 38 ~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~----c~w~gv~c~~~--~--~~v~~L~L~ 109 (887)
+.++|.+||+++|+++..+. ..+|.. ..| |.|.||.|... . .+|+.|+|+
T Consensus 369 t~~~~~~aL~~~k~~~~~~~------------------~~~W~g----~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~ 426 (623)
T PLN03150 369 TLLEEVSALQTLKSSLGLPL------------------RFGWNG----DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLD 426 (623)
T ss_pred cCchHHHHHHHHHHhcCCcc------------------cCCCCC----CCCCCcccccccceeeccCCCCceEEEEEECC
Confidence 45678999999999875432 136753 233 37999999532 1 258889999
Q ss_pred CCcccccccCCcccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCC
Q 040113 110 NSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNS 187 (887)
Q Consensus 110 ~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~ 187 (887)
++.+.|.++. .+..+++|++|+|++|.+.+. +|..++.+++|++|+|++|.+.|.+|..++++++|++|+|++|.
T Consensus 427 ~n~L~g~ip~--~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 427 NQGLRGFIPN--DISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501 (623)
T ss_pred CCCccccCCH--HHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc
Confidence 8888888776 777888888888888887765 77778888888888888888877777777777777777666665
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.12 E-value=8.7e-12 Score=125.39 Aligned_cols=137 Identities=22% Similarity=0.263 Sum_probs=63.3
Q ss_pred CCCCCcEEeCcCCCCCCc----chhhccCCCCCCEEEccCCCCCCc----cchhhhCCCCCCEEEccCCcCCCCCC--ch
Q 040113 252 NLSKLLHLDLSLNELLGE----LPVSIGNLHSLKKLDLSINNLSGE----LPTSIQNLVSLEELDLSFNKLSGEFP--WS 321 (887)
Q Consensus 252 ~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~--~~ 321 (887)
.-++|+++..+.|++... +...|...+.|+.+.++.|.|... +...+..+++|+.|||.+|.++.... -.
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 345566666666655422 233445555666666666655321 23345556666666666665542111 11
Q ss_pred hhccCCCCccEEEccCCCCCCcccccc-----CCCCCccEEEccCCcCCcc----CCccccCCCCCCEEEcCCCCC
Q 040113 322 IVIGNFTQLQSLDFTSNKFSGELHASI-----GNLRSLEVLAIGRCNFSGR----IPSSLRNLTQLITLDLSQNSY 388 (887)
Q Consensus 322 ~~~~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~L~~n~l 388 (887)
..+..+++|+.|++++|.+...-...+ ...+.|+.|.+.+|.++.. +...+...+.|+.|+|++|.+
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 113344455555555555442221111 1234455555555544422 112223344455555555544
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=7.2e-11 Score=122.08 Aligned_cols=120 Identities=30% Similarity=0.306 Sum_probs=75.7
Q ss_pred ccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCc--ccChhhhcC
Q 040113 372 LRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLI--EFPNFLKNQ 449 (887)
Q Consensus 372 l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~--~~~~~l~~~ 449 (887)
...+++++.|||+.|-+..-.+.......+|+|+.|+++.|++...........++.++.|.++.|++. ++-..+..+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 344666666666666655544444456667777777777776554443333336778888888888887 555667778
Q ss_pred CcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccc
Q 040113 450 HHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQ 493 (887)
Q Consensus 450 ~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~ 493 (887)
|+|+.|++..|... ........-+..|+.|+|++|++..++.
T Consensus 222 Psl~~L~L~~N~~~--~~~~~~~~i~~~L~~LdLs~N~li~~~~ 263 (505)
T KOG3207|consen 222 PSLEVLYLEANEII--LIKATSTKILQTLQELDLSNNNLIDFDQ 263 (505)
T ss_pred CcHHHhhhhccccc--ceecchhhhhhHHhhccccCCccccccc
Confidence 89999999988522 1111112225667777777777665553
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=5.3e-11 Score=123.03 Aligned_cols=165 Identities=29% Similarity=0.305 Sum_probs=68.8
Q ss_pred HhhcCCCCCEEEccCCCCCCCchhhh-cCCCCCCEEEcccCCCCCc-cccccCCCCCCcEEeCcCCCCCCcchhhccCCC
Q 040113 201 LVEKLSNLETLDLGYVSIRSTIPHNL-ANLSSLTFLSLHSCGLQGR-IQSSLGNLSKLLHLDLSLNELLGELPVSIGNLH 278 (887)
Q Consensus 201 ~~~~l~~L~~L~L~~n~~~~~~~~~l-~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 278 (887)
....+++|+.|+++.|++........ ..+++|+.|.++.|.++.. +-..+..+++|+.|+|..|.....-.....-+.
T Consensus 167 i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~ 246 (505)
T KOG3207|consen 167 IAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQ 246 (505)
T ss_pred HHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhh
Confidence 33444444444444444332211111 1234555555555554421 111223445555555555532212122222334
Q ss_pred CCCEEEccCCCCCCcc-chhhhCCCCCCEEEccCCcCCCCC-Cch---hhccCCCCccEEEccCCCCCCcc-ccccCCCC
Q 040113 279 SLKKLDLSINNLSGEL-PTSIQNLVSLEELDLSFNKLSGEF-PWS---IVIGNFTQLQSLDFTSNKFSGEL-HASIGNLR 352 (887)
Q Consensus 279 ~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~-~~~---~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~ 352 (887)
.|++|+|++|++.... -...+.++.|+.|+++.+.+...- |+. .....+++|+.|++..|++...- -..+..++
T Consensus 247 ~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~ 326 (505)
T KOG3207|consen 247 TLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLE 326 (505)
T ss_pred HHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccc
Confidence 4555555555544211 122344555555555555544211 100 00233556666666666653211 12233345
Q ss_pred CccEEEccCCcCC
Q 040113 353 SLEVLAIGRCNFS 365 (887)
Q Consensus 353 ~L~~L~L~~n~i~ 365 (887)
+|+.|.+..|.+.
T Consensus 327 nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 327 NLKHLRITLNYLN 339 (505)
T ss_pred hhhhhhccccccc
Confidence 5555555555554
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.02 E-value=3.3e-10 Score=126.43 Aligned_cols=104 Identities=32% Similarity=0.368 Sum_probs=51.1
Q ss_pred eEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCC-cccEEEccCCeeeeeCCccccCCCCCcEEeCCC
Q 040113 552 ILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKES-RLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGD 630 (887)
Q Consensus 552 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~ 630 (887)
.+++..|.+...+. .+..+. .++.|++.+|.++.+.+ ...... +|+.|++++|++. .+|..+..+++|+.|++++
T Consensus 97 ~l~~~~~~~~~~~~-~~~~~~-~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELLELT-NLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccCch-hhhccc-ceeEEecCCcccccCcc-ccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 45566665532222 222223 46666666666654332 233332 5666666666665 3334455555666666666
Q ss_pred CcCCCCCCccccCCCCCCEEEccCCccccc
Q 040113 631 NQIRDIFPSWLGTLPNLTVLILQSNKFYGI 660 (887)
Q Consensus 631 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 660 (887)
|++.... .....++.|+.|++++|++...
T Consensus 173 N~l~~l~-~~~~~~~~L~~L~ls~N~i~~l 201 (394)
T COG4886 173 NDLSDLP-KLLSNLSNLNNLDLSGNKISDL 201 (394)
T ss_pred chhhhhh-hhhhhhhhhhheeccCCccccC
Confidence 6555542 2222445555555555555443
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.99 E-value=2.7e-11 Score=128.88 Aligned_cols=192 Identities=32% Similarity=0.488 Sum_probs=125.1
Q ss_pred CCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCC
Q 040113 129 LEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNL 208 (887)
Q Consensus 129 L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L 208 (887)
-...||+.|++.. +|..++.+..|..+.|.+|.+ ..+|..++++..|.+||++.
T Consensus 77 t~~aDlsrNR~~e--lp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~----------------------- 130 (722)
T KOG0532|consen 77 TVFADLSRNRFSE--LPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSS----------------------- 130 (722)
T ss_pred hhhhhcccccccc--CchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhcc-----------------------
Confidence 3445555555542 455555555555555555544 34444455555555554444
Q ss_pred CEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCC
Q 040113 209 ETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSIN 288 (887)
Q Consensus 209 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 288 (887)
|+++ ..|..++.|+ |+.|-+++|+++ .+|..++...+|..||.+.|.+. .+|..++.+.+|+.|.+..|
T Consensus 131 -------NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn 199 (722)
T KOG0532|consen 131 -------NQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRN 199 (722)
T ss_pred -------chhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhh
Confidence 4444 2344444443 788888888877 67778888888888888888885 56777888888888888888
Q ss_pred CCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCC---CCccEEEccCCc
Q 040113 289 NLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNL---RSLEVLAIGRCN 363 (887)
Q Consensus 289 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~n~ 363 (887)
++. .+|..+..+ .|..||++.|+++ .+|.. |.+++.|++|.|.+|.+. ..|..+... .-.++|+..-|+
T Consensus 200 ~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~--fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 200 HLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVD--FRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hhh-hCCHHHhCC-ceeeeecccCcee-ecchh--hhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 887 566666643 6888888888887 77877 888888888888888876 344444322 223566666663
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.97 E-value=8.6e-10 Score=123.15 Aligned_cols=179 Identities=42% Similarity=0.523 Sum_probs=87.1
Q ss_pred cccCCCCCeEECCCCCCCCCCCCccccCCC-CCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHH
Q 040113 123 LFKLVHLEWLNLAFNDFKSSEIPSEIINLS-RLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANL 201 (887)
Q Consensus 123 l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~-~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~ 201 (887)
+..++.++.|++.+|.++. +|...+.+. +|+.|++++|.+ ..+|..++.+++|+.|++++|++..+ +..
T Consensus 112 ~~~~~~l~~L~l~~n~i~~--i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l~~N~l~~l-------~~~ 181 (394)
T COG4886 112 LLELTNLTSLDLDNNNITD--IPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLSDL-------PKL 181 (394)
T ss_pred hhcccceeEEecCCccccc--Cccccccchhhcccccccccch-hhhhhhhhccccccccccCCchhhhh-------hhh
Confidence 3444556666666666653 455555553 666666666655 33444455666666666666653222 222
Q ss_pred hhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCC
Q 040113 202 VEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLK 281 (887)
Q Consensus 202 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 281 (887)
.+..+.|+.|++++|++... |..+.....|++|.+++|... ..+..+.++.++..+.+.+|++.. ++..++.+++++
T Consensus 182 ~~~~~~L~~L~ls~N~i~~l-~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~ 258 (394)
T COG4886 182 LSNLSNLNNLDLSGNKISDL-PPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLE 258 (394)
T ss_pred hhhhhhhhheeccCCccccC-chhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccc
Confidence 23455555555555555432 222233344555555555322 233344445555555555554431 233444445555
Q ss_pred EEEccCCCCCCccchhhhCCCCCCEEEccCCcCCC
Q 040113 282 KLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSG 316 (887)
Q Consensus 282 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 316 (887)
+|++++|.++.. +. ++.+.+++.|++++|.+..
T Consensus 259 ~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 259 TLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred eecccccccccc-cc-ccccCccCEEeccCccccc
Confidence 555555555422 21 4445555555555555443
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.96 E-value=4.2e-11 Score=127.45 Aligned_cols=194 Identities=26% Similarity=0.317 Sum_probs=121.7
Q ss_pred CCCeeEEeeCCCCCcccChhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCccccc
Q 040113 426 SQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFL 505 (887)
Q Consensus 426 ~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L 505 (887)
+..-...+++.|.+.++|..+..+..|+.+.++.|.+. .+|..+.. +..|+.++|+.|++...+...+..+ |
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~--L~~lt~l~ls~NqlS~lp~~lC~lp-----L 145 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICN--LEALTFLDLSSNQLSHLPDGLCDLP-----L 145 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhh--hhHHHHhhhccchhhcCChhhhcCc-----c
Confidence 44445667777888888888888888888888888876 56666655 7778888888888888777766655 6
Q ss_pred cEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcc
Q 040113 506 LTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNF 585 (887)
Q Consensus 506 ~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l 585 (887)
+.|-+++|+++ .+|..++....|..||.+.|.+. .+|..++++. +|+.|.+..|++
T Consensus 146 kvli~sNNkl~----------------------~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~-slr~l~vrRn~l 201 (722)
T KOG0532|consen 146 KVLIVSNNKLT----------------------SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLT-SLRDLNVRRNHL 201 (722)
T ss_pred eeEEEecCccc----------------------cCCcccccchhHHHhhhhhhhhh-hchHHhhhHH-HHHHHHHhhhhh
Confidence 66766666665 34444555556666666666654 4555555555 466666666665
Q ss_pred cccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCcccc---CCCCCCEEEccCC
Q 040113 586 FGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLG---TLPNLTVLILQSN 655 (887)
Q Consensus 586 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~L~~N 655 (887)
... |..+.. -.|..||+++|+++ .+|-.|..++.|++|.|.+|.+..- |..+. ...-.++|+..-|
T Consensus 202 ~~l-p~El~~-LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP-PAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 202 EDL-PEELCS-LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP-PAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhC-CHHHhC-CceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC-hHHHHhccceeeeeeecchhc
Confidence 432 333332 24566666666666 5566666666666666666666543 32221 2223445555555
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.95 E-value=1.8e-10 Score=116.11 Aligned_cols=205 Identities=23% Similarity=0.236 Sum_probs=92.0
Q ss_pred HhhcCCCCCEEEccCCCCCCC----chhhhcCCCCCCEEEcccCC---CCCccc-------cccCCCCCCcEEeCcCCCC
Q 040113 201 LVEKLSNLETLDLGYVSIRST----IPHNLANLSSLTFLSLHSCG---LQGRIQ-------SSLGNLSKLLHLDLSLNEL 266 (887)
Q Consensus 201 ~~~~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~L~~n~---l~~~~~-------~~l~~l~~L~~L~Ls~n~l 266 (887)
.+..+..+..+++++|.+... +...+.+.++|+..++++-. ....+| .++..+++|++||||.|-+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 334444555555555554322 22334444555555554421 111222 2334566777777777766
Q ss_pred CCcchhh----ccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCC
Q 040113 267 LGELPVS----IGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSG 342 (887)
Q Consensus 267 ~~~~p~~----l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 342 (887)
....++. +.++..|++|+|.+|.+.......++. .|.+|. .++ ..+.-+.|+++....|++..
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~k---------k~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VNK---------KAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HHh---------ccCCCcceEEEEeecccccc
Confidence 5443332 345666777777777664222222211 011111 000 02223445555555554432
Q ss_pred c----cccccCCCCCccEEEccCCcCCcc----CCccccCCCCCCEEEcCCCCCcc--ccchhhhhcCCCCCCEEEccCC
Q 040113 343 E----LHASIGNLRSLEVLAIGRCNFSGR----IPSSLRNLTQLITLDLSQNSYRG--TMELDFLLVSLKNLEVLSLSSN 412 (887)
Q Consensus 343 ~----~~~~l~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~l~~l~~L~~L~L~~n 412 (887)
. +...|...+.|+.+.+..|.|... +...+..+++|++|||.+|.++. .......+..++.|+.|++++|
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 1 122334445555555555544321 12334455555555555555432 2222233445555555555555
Q ss_pred cccccc
Q 040113 413 WLSLLT 418 (887)
Q Consensus 413 ~i~~~~ 418 (887)
.+..-+
T Consensus 252 ll~~~G 257 (382)
T KOG1909|consen 252 LLENEG 257 (382)
T ss_pred cccccc
Confidence 444333
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.89 E-value=4.4e-10 Score=110.32 Aligned_cols=200 Identities=22% Similarity=0.172 Sum_probs=127.6
Q ss_pred CCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCcEEEccC---ccccccCChhhhCcCCCC
Q 040113 475 TQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSN---NSFIGEIPSWLCKLDSLE 551 (887)
Q Consensus 475 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~---n~~~~~~~~~~~~l~~L~ 551 (887)
+.+|+++.++++.-..+..... ..+.|+++.+.+..++......+ .-...|.+. .-..|..-..+.....|+
T Consensus 213 f~~l~~~~~s~~~~~~i~~~~~----~kptl~t~~v~~s~~~~~~~l~p-e~~~~D~~~~E~~t~~G~~~~~~dTWq~Lt 287 (490)
T KOG1259|consen 213 FRNLKTLKFSALSTENIVDIEL----LKPTLQTICVHNTTIQDVPSLLP-ETILADPSGSEPSTSNGSALVSADTWQELT 287 (490)
T ss_pred hhhhheeeeeccchhheeceee----cCchhheeeeecccccccccccc-hhhhcCccCCCCCccCCceEEecchHhhhh
Confidence 5677777777765544433221 22336666665554443211111 111111111 111222222233346788
Q ss_pred eEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCC
Q 040113 552 ILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDN 631 (887)
Q Consensus 552 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N 631 (887)
++|||+|.|+ .+.+...-.| .++.|++++|.|.... .+..+++|+.||||+|.++. ...+=..+-+.+.|.|+.|
T Consensus 288 elDLS~N~I~-~iDESvKL~P-kir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 288 ELDLSGNLIT-QIDESVKLAP-KLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred hccccccchh-hhhhhhhhcc-ceeEEeccccceeeeh--hhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehhhh
Confidence 9999999887 4555554455 7999999999987553 37788899999999998884 3344456778889999999
Q ss_pred cCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccC
Q 040113 632 QIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKL 687 (887)
Q Consensus 632 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~i 687 (887)
.|... ..++++-+|..||+++|++...-.. ...++++-|+.+.|-+|++.+..
T Consensus 363 ~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV-~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 363 KIETL--SGLRKLYSLVNLDLSSNQIEELDEV-NHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hHhhh--hhhHhhhhheeccccccchhhHHHh-cccccccHHHHHhhcCCCccccc
Confidence 88776 5678888899999999998654221 22367888999999999988543
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.87 E-value=1.7e-09 Score=128.67 Aligned_cols=179 Identities=27% Similarity=0.261 Sum_probs=101.2
Q ss_pred CCCCCeEECCCCC--CCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhh
Q 040113 126 LVHLEWLNLAFND--FKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVE 203 (887)
Q Consensus 126 l~~L~~L~L~~n~--~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~ 203 (887)
.+.|+.|-+..|. +... -+..|..++.|++|||++|.-.+.+|..|++|.+||+|++++..+ ..+|..++
T Consensus 544 ~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I-------~~LP~~l~ 615 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI-------SHLPSGLG 615 (889)
T ss_pred CCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc-------cccchHHH
Confidence 3456677666664 3321 233466777777777777766677777777777777777777763 34567777
Q ss_pred cCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCC--CCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCC
Q 040113 204 KLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCG--LQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLK 281 (887)
Q Consensus 204 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~--l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 281 (887)
+++.|.+|++..+.....+|.....+++|++|.+.... .+...-..+.++.+|+.+....... .+-..+..++.|.
T Consensus 616 ~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~ 693 (889)
T KOG4658|consen 616 NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLR 693 (889)
T ss_pred HHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHH
Confidence 77777777777776555556666667777777776553 1222223344455555554433221 1111122222222
Q ss_pred ----EEEccCCCCCCccchhhhCCCCCCEEEccCCcCC
Q 040113 282 ----KLDLSINNLSGELPTSIQNLVSLEELDLSFNKLS 315 (887)
Q Consensus 282 ----~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 315 (887)
.+.+.++... ..+..+..+.+|+.|.+.++...
T Consensus 694 ~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 694 SLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred HHhHhhhhcccccc-eeecccccccCcceEEEEcCCCc
Confidence 2222222222 33444566667777777666654
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.86 E-value=5.6e-10 Score=109.58 Aligned_cols=140 Identities=26% Similarity=0.295 Sum_probs=90.9
Q ss_pred ccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhc
Q 040113 245 RIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVI 324 (887)
Q Consensus 245 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 324 (887)
..-..+...+.|+.+||++|.|+ .+-+++.-.++++.|++++|.+... +.++.+++|+.|||++|.++....+ -
T Consensus 275 ~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gw---h 348 (490)
T KOG1259|consen 275 SALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGW---H 348 (490)
T ss_pred ceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhh---H
Confidence 33334445667788888888775 4556666677888888888887633 3377778888888888877643333 2
Q ss_pred cCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCCcc-CCccccCCCCCCEEEcCCCCCcccc
Q 040113 325 GNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGR-IPSSLRNLTQLITLDLSQNSYRGTM 392 (887)
Q Consensus 325 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~-~~~~l~~l~~L~~L~L~~n~l~~~~ 392 (887)
.++-++++|.|+.|.+. .-..++.+-+|..|++++|+|... -...++++|.|+.+.+.+|.+.+..
T Consensus 349 ~KLGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhcCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 34557777777777764 233455666777777777776532 1234666777777777777666544
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.85 E-value=2e-09 Score=102.28 Aligned_cols=106 Identities=33% Similarity=0.392 Sum_probs=26.5
Q ss_pred CCCCEEEcccCCCCCccccccC-CCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhh-hCCCCCCEE
Q 040113 230 SSLTFLSLHSCGLQGRIQSSLG-NLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSI-QNLVSLEEL 307 (887)
Q Consensus 230 ~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L 307 (887)
.++++|+|++|.+... +.++ .+.+|+.|++++|.+... +.+..+++|++|++++|.++. +.+.+ ..+++|++|
T Consensus 19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EE
T ss_pred cccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEE
Confidence 3455555555555422 2233 345566666666655432 245555666666666666653 22223 345666666
Q ss_pred EccCCcCCCCCCchhhccCCCCccEEEccCCCCC
Q 040113 308 DLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFS 341 (887)
Q Consensus 308 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~ 341 (887)
++++|++.. +..-..++.+++|+.|++.+|.++
T Consensus 94 ~L~~N~I~~-l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 94 YLSNNKISD-LNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp E-TTS---S-CCCCGGGGG-TT--EEE-TT-GGG
T ss_pred ECcCCcCCC-hHHhHHHHcCCCcceeeccCCccc
Confidence 666666542 221122445555555555555543
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.80 E-value=4.2e-09 Score=100.18 Aligned_cols=85 Identities=25% Similarity=0.306 Sum_probs=27.5
Q ss_pred cCCCCccEEEccCCCCCCcccccc-CCCCCccEEEccCCcCCcc-CCccccCCCCCCEEEcCCCCCcccc-chhhhhcCC
Q 040113 325 GNFTQLQSLDFTSNKFSGELHASI-GNLRSLEVLAIGRCNFSGR-IPSSLRNLTQLITLDLSQNSYRGTM-ELDFLLVSL 401 (887)
Q Consensus 325 ~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~i~~~-~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~l~~l 401 (887)
..++.|+.|++++|.++.. ...+ ..+++|++|++++|++... .-..+..+++|++|++.+|++.... ...+.+..+
T Consensus 61 ~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~l 139 (175)
T PF14580_consen 61 PGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKL 139 (175)
T ss_dssp ---TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-
T ss_pred cChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHc
Confidence 3344444444444444422 1111 2344455555555544321 1123445566666666666654332 123346667
Q ss_pred CCCCEEEcc
Q 040113 402 KNLEVLSLS 410 (887)
Q Consensus 402 ~~L~~L~L~ 410 (887)
|+|+.||-.
T Consensus 140 P~Lk~LD~~ 148 (175)
T PF14580_consen 140 PSLKVLDGQ 148 (175)
T ss_dssp TT-SEETTE
T ss_pred ChhheeCCE
Confidence 777776543
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.78 E-value=4.5e-09 Score=81.96 Aligned_cols=60 Identities=42% Similarity=0.636 Sum_probs=32.8
Q ss_pred CCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcc
Q 040113 772 GLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYL 831 (887)
Q Consensus 772 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l 831 (887)
+|++|++++|+++...++.|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 345555555555544445555555555555555555555555555555555555555543
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.75 E-value=6.5e-09 Score=81.07 Aligned_cols=61 Identities=46% Similarity=0.638 Sum_probs=57.3
Q ss_pred CceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcc
Q 040113 747 DILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNF 807 (887)
Q Consensus 747 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l 807 (887)
++|+.|++++|+++...+..|.++++|++|++++|.++...|+.|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4689999999999977778999999999999999999999999999999999999999986
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.71 E-value=1.9e-09 Score=120.47 Aligned_cols=246 Identities=24% Similarity=0.237 Sum_probs=165.6
Q ss_pred CcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcE
Q 040113 546 KLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEF 625 (887)
Q Consensus 546 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 625 (887)
.+..++.+.+..|.+.. +-..+..+. +|+.|++.+|+|.++.. .+..+++|++|++++|+|+... .+..++.|+.
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~-~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLK-SLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKE 144 (414)
T ss_pred HhHhHHhhccchhhhhh-hhccccccc-ceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhh
Confidence 35566777788887763 333455566 68899999998876543 2667888999999999998664 3666777999
Q ss_pred EeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCC
Q 040113 626 LDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSD 705 (887)
Q Consensus 626 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~ 705 (887)
|++++|.|... ..+..++.|+.+++++|++..+-+.. ...+.+++.+++++|.+...-....... +..+...+
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~--~~~~~~l~~l~l~~n~i~~i~~~~~~~~---l~~~~l~~ 217 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE--LSELISLEELDLGGNSIREIEGLDLLKK---LVLLSLLD 217 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh--hhhccchHHHhccCCchhcccchHHHHH---HHHhhccc
Confidence 99999999877 56777889999999999988764410 1457888899999998863222221111 11111110
Q ss_pred ccccccccCCccccccccccccccceeeeecccccccccc--CC--ceeEEEeecCcCCccChhhhhcccCCCEEeCCCC
Q 040113 706 LKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKV--PD--ILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNN 781 (887)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N 781 (887)
.... ....+ .. +|+.+++++|++. .++..+..+..+..|++++|
T Consensus 218 n~i~-------------------------------~~~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 218 NKIS-------------------------------KLEGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSN 265 (414)
T ss_pred ccce-------------------------------eccCcccchhHHHHHHhcccCccc-cccccccccccccccchhhc
Confidence 0000 00000 11 3788899999987 44466778888999999999
Q ss_pred cccccCCccccCCCCCCEEeCCCCccccc---CCcc-ccCCCCCCeeecccCcccccCCC
Q 040113 782 NLQGHIPSCLGNLTNLESLDLSNNNFLGQ---IPQQ-LVELTFLEFFNVSDNYLTGPIPQ 837 (887)
Q Consensus 782 ~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~---~p~~-l~~L~~L~~L~ls~N~l~g~iP~ 837 (887)
++... ..+.....+..+....|.+... .... ......+..+.+.+|......+.
T Consensus 266 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (414)
T KOG0531|consen 266 RISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISSL 323 (414)
T ss_pred ccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccccc
Confidence 88765 3356667788888888887622 2221 45667788888999988876653
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.67 E-value=2.4e-08 Score=118.95 Aligned_cols=85 Identities=34% Similarity=0.497 Sum_probs=39.3
Q ss_pred hhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCC
Q 040113 202 VEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLK 281 (887)
Q Consensus 202 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 281 (887)
|..++.|+.|||++|.--+.+|..++.+-+||+|+++++.+. .+|..+++++.|.+|++..+.....+|.....+.+|+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence 444555555555554444444444444445555544444444 3444444444444444444433333333333344444
Q ss_pred EEEccC
Q 040113 282 KLDLSI 287 (887)
Q Consensus 282 ~L~L~~ 287 (887)
+|.+..
T Consensus 646 ~L~l~~ 651 (889)
T KOG4658|consen 646 VLRLPR 651 (889)
T ss_pred EEEeec
Confidence 444433
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.66 E-value=3.1e-09 Score=118.72 Aligned_cols=171 Identities=30% Similarity=0.334 Sum_probs=78.1
Q ss_pred cCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcch-hhccCCCCCCE
Q 040113 204 KLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELP-VSIGNLHSLKK 282 (887)
Q Consensus 204 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~ 282 (887)
.+++|++|++++|.++...+ +..++.|+.|++++|.+... ..+..++.|+.+++++|.+...-+ . ...+.+++.
T Consensus 116 ~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~ 190 (414)
T KOG0531|consen 116 SLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEE 190 (414)
T ss_pred hhhcchheeccccccccccc--hhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHH
Confidence 33444444444444433322 33444455555555555422 233345566666666666543322 1 345556666
Q ss_pred EEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCC--ccEEEccCCCCCCccccccCCCCCccEEEcc
Q 040113 283 LDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQ--LQSLDFTSNKFSGELHASIGNLRSLEVLAIG 360 (887)
Q Consensus 283 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 360 (887)
+++.+|.+... ..+..+..+..+++..|.++..-+ +..+.. |+.+++++|++.. .+..+..+..+..|++.
T Consensus 191 l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~----l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~ 263 (414)
T KOG0531|consen 191 LDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG----LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLS 263 (414)
T ss_pred HhccCCchhcc--cchHHHHHHHHhhcccccceeccC----cccchhHHHHHHhcccCcccc-ccccccccccccccchh
Confidence 66666655422 223333344444555555542221 112222 5566666665542 22344445555555655
Q ss_pred CCcCCccCCccccCCCCCCEEEcCCCCC
Q 040113 361 RCNFSGRIPSSLRNLTQLITLDLSQNSY 388 (887)
Q Consensus 361 ~n~i~~~~~~~l~~l~~L~~L~L~~n~l 388 (887)
.|++... ..+.....+..+....+.+
T Consensus 264 ~n~~~~~--~~~~~~~~~~~~~~~~~~~ 289 (414)
T KOG0531|consen 264 SNRISNL--EGLERLPKLSELWLNDNKL 289 (414)
T ss_pred hcccccc--ccccccchHHHhccCcchh
Confidence 5555422 1222333444444444443
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.5e-09 Score=106.81 Aligned_cols=184 Identities=23% Similarity=0.219 Sum_probs=86.5
Q ss_pred CCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCC
Q 040113 129 LEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNL 208 (887)
Q Consensus 129 L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L 208 (887)
|++|||+...|+...+...+..|.+|+.|.|.++++.+.+-..+.+-.+|+.|+++.+... ......-.+..++.|
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~----t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGF----TENALQLLLSSCSRL 262 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccccc----chhHHHHHHHhhhhH
Confidence 5666666666554333334555666666666666665555555666666666666655411 111223344555555
Q ss_pred CEEEccCCCCCCCchhhh-cC-CCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEcc
Q 040113 209 ETLDLGYVSIRSTIPHNL-AN-LSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLS 286 (887)
Q Consensus 209 ~~L~L~~n~~~~~~~~~l-~~-l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 286 (887)
..|++++|.........+ .. -++|+.|++++++-. -....+..-...+++|..|||+
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn---------------------l~~sh~~tL~~rcp~l~~LDLS 321 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN---------------------LQKSHLSTLVRRCPNLVHLDLS 321 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh---------------------hhhhHHHHHHHhCCceeeeccc
Confidence 555555555433222111 11 134444444444310 0001122222345555555555
Q ss_pred CCC-CCCccchhhhCCCCCCEEEccCCcCCCCCCchh-hccCCCCccEEEccCCC
Q 040113 287 INN-LSGELPTSIQNLVSLEELDLSFNKLSGEFPWSI-VIGNFTQLQSLDFTSNK 339 (887)
Q Consensus 287 ~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~~~~l~~L~~L~L~~n~ 339 (887)
+|. ++......|.+++.|++|.++.|.. .+|... .+...+.|.+|++.++-
T Consensus 322 D~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 322 DSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred cccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 543 2223334455556666666665542 222211 14455666666665553
No 44
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.53 E-value=1.1e-07 Score=67.62 Aligned_cols=42 Identities=40% Similarity=0.818 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhhcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCccccceEec
Q 040113 40 DDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKPEEGNIDCCSWDGVECS 97 (887)
Q Consensus 40 ~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~ 97 (887)
++|++||++||+++..++. ..+.+|+... ..+||+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~---------------~~l~~W~~~~-~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPS---------------GVLSSWNPSS-DSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC----------------CCCTT--TT---S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccC---------------cccccCCCcC-CCCCeeeccEEeC
Confidence 5799999999999986443 2799999731 2799999999995
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=2.3e-08 Score=98.54 Aligned_cols=158 Identities=22% Similarity=0.239 Sum_probs=90.8
Q ss_pred CCcEEeCcCCCCCCc-chhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEE
Q 040113 255 KLLHLDLSLNELLGE-LPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSL 333 (887)
Q Consensus 255 ~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L 333 (887)
+|+++||+...++.. +-..+..+.+|+.|.+.++++...+...+++-.+|+.|+++.+.--........+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 577777777666532 2233456677777777777777777777777777777777765422233333346667777777
Q ss_pred EccCCCCCCccccc-cCC-CCCccEEEccCCcCC---ccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEE
Q 040113 334 DFTSNKFSGELHAS-IGN-LRSLEVLAIGRCNFS---GRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLS 408 (887)
Q Consensus 334 ~L~~n~l~~~~~~~-l~~-l~~L~~L~L~~n~i~---~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ 408 (887)
+++.|.+....... +.. -++|+.|+++++.-. ..+..-...+++|.+|||++|..... .....+..++.|++|.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLS 344 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-hHHHHHHhcchheeee
Confidence 77777665332211 111 245667777665311 11112234567777777777643322 1112356677777777
Q ss_pred ccCCc
Q 040113 409 LSSNW 413 (887)
Q Consensus 409 L~~n~ 413 (887)
++.|+
T Consensus 345 lsRCY 349 (419)
T KOG2120|consen 345 LSRCY 349 (419)
T ss_pred hhhhc
Confidence 77774
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.24 E-value=6.2e-08 Score=84.53 Aligned_cols=87 Identities=29% Similarity=0.418 Sum_probs=52.0
Q ss_pred ceeEEEeecCcCCccChhhhh-cccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeec
Q 040113 748 ILTSIILSSNRFDGMIPTSIA-NLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNV 826 (887)
Q Consensus 748 ~L~~L~Ls~N~l~~~ip~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~l 826 (887)
.|+.++|++|.+. ..|..|. ..+.++.|||++|.++ .+|..+..++.|+.|+++.|.+. ..|+.+..|.+|-+|+.
T Consensus 54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 3556666666666 3333333 3346666666666666 45555666667777777777666 34555555666666666
Q ss_pred ccCcccccCCCC
Q 040113 827 SDNYLTGPIPQG 838 (887)
Q Consensus 827 s~N~l~g~iP~~ 838 (887)
.+|.+. +||..
T Consensus 131 ~~na~~-eid~d 141 (177)
T KOG4579|consen 131 PENARA-EIDVD 141 (177)
T ss_pred CCCccc-cCcHH
Confidence 666554 55544
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.22 E-value=3.4e-08 Score=102.10 Aligned_cols=299 Identities=20% Similarity=0.155 Sum_probs=140.9
Q ss_pred CCCeEECCCCCCCCC-CCCccccCCCCCCEEECCCCCC-CccCCcccc-CCCCCcEEEccCCCCCCccccCCChHHHhhc
Q 040113 128 HLEWLNLAFNDFKSS-EIPSEIINLSRLSYLNLSHSSF-FGQIPSEIL-ELVNLVSLDLSLNSGYGLELQKPNFANLVEK 204 (887)
Q Consensus 128 ~L~~L~L~~n~~~~~-~lp~~~~~l~~L~~L~Ls~n~~-~~~~p~~l~-~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~ 204 (887)
.|+.|.++++.-.+. .+-..-.+++++++|++.+|.. +...-..++ .+++|++|++..+. .+....+......
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~----~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS----SITDVSLKYLAEG 214 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc----hhHHHHHHHHHHh
Confidence 355555555542211 1112233555566665555532 211112222 35666666665532 1111122233445
Q ss_pred CCCCCEEEccCCC-CCCC-chhhhcCCCCCCEEEcccCCCCCcccccc----CCCCCCcEEeCcCCCC-CCcc-hhhccC
Q 040113 205 LSNLETLDLGYVS-IRST-IPHNLANLSSLTFLSLHSCGLQGRIQSSL----GNLSKLLHLDLSLNEL-LGEL-PVSIGN 276 (887)
Q Consensus 205 l~~L~~L~L~~n~-~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~Ls~n~l-~~~~-p~~l~~ 276 (887)
+++|++|+++++. +++. +.....++..++.+.+.+|.-.+ .+.+ +.+..+..+++..+.. +..- -..-..
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~ 292 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG 292 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence 6666666666654 2321 11223344555555555443111 1111 2334444555444422 2211 111134
Q ss_pred CCCCCEEEccCCCCCCc-cchhh-hCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCC--CccccccCCCC
Q 040113 277 LHSLKKLDLSINNLSGE-LPTSI-QNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFS--GELHASIGNLR 352 (887)
Q Consensus 277 l~~L~~L~L~~n~l~~~-~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~ 352 (887)
+..|++|..+++.-.+. .-..+ .++++|+.|.++.++.-+..-....-.+.+.|+.+++..+... +.+...-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 55666776666543222 22222 3456777777777663323322222345666777777766532 11223334567
Q ss_pred CccEEEccCCcCCccC-----CccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCc-ccccccccCCCCC
Q 040113 353 SLEVLAIGRCNFSGRI-----PSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNW-LSLLTKVTSNTTS 426 (887)
Q Consensus 353 ~L~~L~L~~n~i~~~~-----~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~-i~~~~~~~~~~~~ 426 (887)
.|+.+.+++|...... ...-..+..|..+.+++++........ .+..+++|+.+++.++. ++..+...+...+
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le-~l~~c~~Leri~l~~~q~vtk~~i~~~~~~l 451 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE-HLSICRNLERIELIDCQDVTKEAISRFATHL 451 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH-HHhhCcccceeeeechhhhhhhhhHHHHhhC
Confidence 7777777776433221 112234567778888888766544433 36777888888887774 2222222333345
Q ss_pred CCeeEEe
Q 040113 427 QKFTVVG 433 (887)
Q Consensus 427 ~~L~~l~ 433 (887)
+++++.-
T Consensus 452 p~i~v~a 458 (483)
T KOG4341|consen 452 PNIKVHA 458 (483)
T ss_pred ccceehh
Confidence 5555443
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=4e-07 Score=89.94 Aligned_cols=86 Identities=27% Similarity=0.261 Sum_probs=46.3
Q ss_pred CCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCc--ccChhhhcCCc
Q 040113 374 NLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLI--EFPNFLKNQHH 451 (887)
Q Consensus 374 ~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~--~~~~~l~~~~~ 451 (887)
..+.++.+||.+|.++.-......+.++|.|+.|+++.|.+...-.... ....+|+.+-+.+..+. .....+..+|.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 3566777777777776544444456777777777777775432211110 23445555555555443 33334444444
Q ss_pred ccEEecccC
Q 040113 452 LMLLDLSSN 460 (887)
Q Consensus 452 L~~L~Ls~n 460 (887)
+++|.++.|
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 455444444
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.19 E-value=3.4e-08 Score=108.48 Aligned_cols=125 Identities=33% Similarity=0.347 Sum_probs=63.1
Q ss_pred CCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchh-hccCCCCCCEEEcc
Q 040113 208 LETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPV-SIGNLHSLKKLDLS 286 (887)
Q Consensus 208 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~L~ 286 (887)
|.+.+.++|.+. .+..++.-++.|+.|+|++|+++.. ..+..+++|++|||++|.+. .+|. ....+ +|+.|.++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeeec
Confidence 334444444443 1223344455566666666665533 24555666666666666654 2222 11222 26666666
Q ss_pred CCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCC
Q 040113 287 INNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKF 340 (887)
Q Consensus 287 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l 340 (887)
+|.++.. ..+.++.+|+.||+++|-+.+.- .-..+..+..|+.|.|.+|.+
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hs-eL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHS-ELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcch-hhhHHHHHHHHHHHhhcCCcc
Confidence 6665422 33556666666666666555321 111244455666666666654
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=1.9e-06 Score=85.31 Aligned_cols=192 Identities=18% Similarity=0.183 Sum_probs=90.0
Q ss_pred CCCCCcEEeCcCCCCCC--cchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCC
Q 040113 252 NLSKLLHLDLSLNELLG--ELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQ 329 (887)
Q Consensus 252 ~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 329 (887)
.++.++.+||.+|.++. .+..-+.+++.|++|+++.|++...+-..-....+|+.|.|.+..+.-.-.. ..+..+|.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~-s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQST-SSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhh-hhhhcchh
Confidence 34556666666666542 2223344555666666666655433221112344555555555444321111 11334444
Q ss_pred ccEEEccCCCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEc
Q 040113 330 LQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSL 409 (887)
Q Consensus 330 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L 409 (887)
++.|.++.|.+.. +.+..+.+.. .-+.+++|.+-.|...--..........|++..+-+
T Consensus 148 vtelHmS~N~~rq--------------~n~Dd~c~e~-------~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v 206 (418)
T KOG2982|consen 148 VTELHMSDNSLRQ--------------LNLDDNCIED-------WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFV 206 (418)
T ss_pred hhhhhhccchhhh--------------hccccccccc-------cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheee
Confidence 5555555443211 1111111100 012334444434332211111112334556666666
Q ss_pred cCCcccccccccCCCCCCCeeEEeeCCCCCcccC--hhhhcCCcccEEecccCcccCC
Q 040113 410 SSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFP--NFLKNQHHLMLLDLSSNRIHGK 465 (887)
Q Consensus 410 ~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~--~~l~~~~~L~~L~Ls~n~l~~~ 465 (887)
..|++...........++.+..|++..+++..+. +.+..+++|..|.++++.+.+.
T Consensus 207 ~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 207 CEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred ecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 6666655555444445556666666666665332 4567778888888888776543
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.12 E-value=8.1e-07 Score=86.70 Aligned_cols=115 Identities=23% Similarity=0.246 Sum_probs=59.8
Q ss_pred HhhcCCCCCEEEccCCCCCCCchhh----hcCCCCCCEEEcccCCCCCc----ccc---------ccCCCCCCcEEeCcC
Q 040113 201 LVEKLSNLETLDLGYVSIRSTIPHN----LANLSSLTFLSLHSCGLQGR----IQS---------SLGNLSKLLHLDLSL 263 (887)
Q Consensus 201 ~~~~l~~L~~L~L~~n~~~~~~~~~----l~~l~~L~~L~L~~n~l~~~----~~~---------~l~~l~~L~~L~Ls~ 263 (887)
.+.+|++|+..+|+.|.+....|.. +++-+.|++|.+++|.+.-. +.. ...+-+.|++.....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 4455666666666666665544433 34456666777766655321 111 123446666776666
Q ss_pred CCCCCc----chhhccCCCCCCEEEccCCCCCCc-----cchhhhCCCCCCEEEccCCcCC
Q 040113 264 NELLGE----LPVSIGNLHSLKKLDLSINNLSGE-----LPTSIQNLVSLEELDLSFNKLS 315 (887)
Q Consensus 264 n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~ 315 (887)
|++..- ....+..-..|+++.+.+|.|... +-..+..+.+|+.||+.+|.++
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 665421 111233335666666666665422 1112344556666666666654
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.06 E-value=8.6e-08 Score=105.36 Aligned_cols=196 Identities=23% Similarity=0.246 Sum_probs=99.6
Q ss_pred CCCCEEEcccCCCCCcc-ccccCCCCCCcEEeCcCCCCCCcchhhccCC-CCCCEEEccCCCCCCccchhhhC-------
Q 040113 230 SSLTFLSLHSCGLQGRI-QSSLGNLSKLLHLDLSLNELLGELPVSIGNL-HSLKKLDLSINNLSGELPTSIQN------- 300 (887)
Q Consensus 230 ~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~------- 300 (887)
++++.|.+-.-.-.+.. |-.+..+.+|++|.+.++.+.. ...+..+ ..|++|.-.+ .++ .+-+.|+.
T Consensus 84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~-Sl~-Al~~v~ascggd~~n 159 (1096)
T KOG1859|consen 84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHN-SLD-ALRHVFASCGGDISN 159 (1096)
T ss_pred hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhc-cHH-HHHHHHHHhcccccc
Confidence 44555554433322222 5567788999999999988753 1111111 1233332111 110 00000100
Q ss_pred ---CCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCCccCCc-cccCCC
Q 040113 301 ---LVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPS-SLRNLT 376 (887)
Q Consensus 301 ---l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~-~l~~l~ 376 (887)
--.|...+.++|.+. .+... +.-++.|+.|+|++|+++.. +.+..++.|++|||+.|.+.. +|. ....+
T Consensus 160 s~~Wn~L~~a~fsyN~L~-~mD~S--Lqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc- 232 (1096)
T KOG1859|consen 160 SPVWNKLATASFSYNRLV-LMDES--LQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGC- 232 (1096)
T ss_pred chhhhhHhhhhcchhhHH-hHHHH--HHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhh-
Confidence 113555555666554 33333 44456666666666666532 255566666666666666652 222 12223
Q ss_pred CCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCc
Q 040113 377 QLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLI 440 (887)
Q Consensus 377 ~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~ 440 (887)
.|+.|.+++|.++.... +.++++|+.||+++|-+.....+.+.+.+..|+.|.+.+|.+.
T Consensus 233 ~L~~L~lrnN~l~tL~g----ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 233 KLQLLNLRNNALTTLRG----IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hheeeeecccHHHhhhh----HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 26666666666554332 4566666666666666655555555555555666666665544
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.04 E-value=1.4e-06 Score=85.00 Aligned_cols=249 Identities=19% Similarity=0.153 Sum_probs=117.8
Q ss_pred CcEEEEEcCCCcccccccC--CcccccCCCCCeEECCCCCCCCC--CCC-------ccccCCCCCCEEECCCCCCCccCC
Q 040113 101 GHVMKLDLSNSCLYGSINS--SSSLFKLVHLEWLNLAFNDFKSS--EIP-------SEIINLSRLSYLNLSHSSFFGQIP 169 (887)
Q Consensus 101 ~~v~~L~L~~~~l~~~~~~--~~~l~~l~~L~~L~L~~n~~~~~--~lp-------~~~~~l~~L~~L~Ls~n~~~~~~p 169 (887)
..++.++||+|.+...... ...+.+-++|+..+++.-..... .++ +.+-+|++|+..+||.|.|....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 4678888998887543321 11344556777777775322110 122 235577888888888887766666
Q ss_pred ccc----cCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCc
Q 040113 170 SEI----LELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGR 245 (887)
Q Consensus 170 ~~l----~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 245 (887)
..+ +.-+.|+||.+++|.+.-+. .+.+...+..+.. .....+-|.|++.....|++..-
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~a--G~rigkal~~la~---------------nKKaa~kp~Le~vicgrNRleng 172 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIA--GGRIGKALFHLAY---------------NKKAADKPKLEVVICGRNRLENG 172 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccc--hhHHHHHHHHHHH---------------HhhhccCCCceEEEeccchhccC
Confidence 433 44566777777776532211 1222222111100 00112234444544444443311
Q ss_pred c----ccccCCCCCCcEEeCcCCCCCCc-----chhhccCCCCCCEEEccCCCCCCccc----hhhhCCCCCCEEEccCC
Q 040113 246 I----QSSLGNLSKLLHLDLSLNELLGE-----LPVSIGNLHSLKKLDLSINNLSGELP----TSIQNLVSLEELDLSFN 312 (887)
Q Consensus 246 ~----~~~l~~l~~L~~L~Ls~n~l~~~-----~p~~l~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n 312 (887)
. ...+..-..|+.+.+..|.|... +-..+..+.+|++|++++|.++.... ..+..-+.|++|.+.+|
T Consensus 173 s~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 173 SKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred cHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 0 01122223455555555544321 11122334555566666655543222 22233344566666666
Q ss_pred cCCCCCCchhh----ccCCCCccEEEccCCCCCCccccc-------cCCCCCccEEEccCCcCCc
Q 040113 313 KLSGEFPWSIV----IGNFTQLQSLDFTSNKFSGELHAS-------IGNLRSLEVLAIGRCNFSG 366 (887)
Q Consensus 313 ~l~~~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~-------l~~l~~L~~L~L~~n~i~~ 366 (887)
-++..-..... -...++|..|-..+|...+.+... -..+|-|..|.+.+|++..
T Consensus 253 lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 253 LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred hhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 55432221110 012355666666666544332211 1345667777777777653
No 54
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.02 E-value=4.8e-07 Score=93.82 Aligned_cols=303 Identities=21% Similarity=0.119 Sum_probs=143.5
Q ss_pred CCCCEEECCCCCCCccCC--ccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCC-CCCCCchh-hhc
Q 040113 152 SRLSYLNLSHSSFFGQIP--SEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYV-SIRSTIPH-NLA 227 (887)
Q Consensus 152 ~~L~~L~Ls~n~~~~~~p--~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n-~~~~~~~~-~l~ 227 (887)
..|+.|.++++.-.+.-+ ..-.+++++++|.+.++. .+.+..+-..-..+++|++|++..| .++..... ...
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~----~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK----KITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcce----eccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence 467888888886544333 333468888888888775 2222344455566777888877773 34433333 223
Q ss_pred CCCCCCEEEcccCC-CCCc-cccccCCCCCCcEEeCcCCCCCCc--chhhccCCCCCCEEEccCCCCCCccc--hhhhCC
Q 040113 228 NLSSLTFLSLHSCG-LQGR-IQSSLGNLSKLLHLDLSLNELLGE--LPVSIGNLHSLKKLDLSINNLSGELP--TSIQNL 301 (887)
Q Consensus 228 ~l~~L~~L~L~~n~-l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~~--~~l~~l 301 (887)
.+++|++|++++|. +++. +.....+++.++.+.+.+|.-.+. +-..-+.+..+.++++..|....... ..-..+
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 56677777776664 2221 111223444455554444321110 00001222334444444442211110 011234
Q ss_pred CCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCCccCCcc-ccCCCCCCE
Q 040113 302 VSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSS-LRNLTQLIT 380 (887)
Q Consensus 302 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~-l~~l~~L~~ 380 (887)
..|+.|+.+++...+..+-.....+..+|+.+.++.++- ++..-... -.+.+.|+.
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~-----------------------fsd~~ft~l~rn~~~Le~ 350 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQ-----------------------FSDRGFTMLGRNCPHLER 350 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccch-----------------------hhhhhhhhhhcCChhhhh
Confidence 445555555443322222222223344444444444431 11111011 123455555
Q ss_pred EEcCCCCCccccchhhhhcCCCCCCEEEccCCcc-ccccccc---CCCCCCCeeEEeeCCCCCc--ccChhhhcCCcccE
Q 040113 381 LDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWL-SLLTKVT---SNTTSQKFTVVGLRSCNLI--EFPNFLKNQHHLML 454 (887)
Q Consensus 381 L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i-~~~~~~~---~~~~~~~L~~l~l~~~~l~--~~~~~l~~~~~L~~ 454 (887)
+++..+...........-.+++.|+.+.++.|.. +..+... .......+..+.+++|... ...+.+..+++|+.
T Consensus 351 l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Ler 430 (483)
T KOG4341|consen 351 LDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLER 430 (483)
T ss_pred hcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccce
Confidence 5555554332222222244556666666665532 1111110 1124556777777777665 45567788889999
Q ss_pred EecccCcccCCCCccccccCCCCCcEE
Q 040113 455 LDLSSNRIHGKIPSWLLDPSTQNLSAL 481 (887)
Q Consensus 455 L~Ls~n~l~~~~p~~~~~~~~~~L~~L 481 (887)
+++.+++-...-+..-+...+|+++..
T Consensus 431 i~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 431 IELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred eeeechhhhhhhhhHHHHhhCccceeh
Confidence 998888754333322222335554443
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.82 E-value=6.3e-05 Score=80.66 Aligned_cols=77 Identities=12% Similarity=0.135 Sum_probs=45.8
Q ss_pred ccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCC
Q 040113 593 FMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSK 672 (887)
Q Consensus 593 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~ 672 (887)
+..+.+++.|++++|.++ .+| .+ ..+|++|.++++.--..+|+.+ .++|+.|++++|.....+| .+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP--------~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP--------ES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc--------cc
Confidence 344577888888888777 345 22 2468888887754444445443 2477788887773222221 34
Q ss_pred CCEEEcCCCcC
Q 040113 673 LRIIDLSNNRF 683 (887)
Q Consensus 673 L~~L~Ls~N~l 683 (887)
|+.|+++++..
T Consensus 114 Le~L~L~~n~~ 124 (426)
T PRK15386 114 VRSLEIKGSAT 124 (426)
T ss_pred cceEEeCCCCC
Confidence 66666665543
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.74 E-value=3.7e-06 Score=73.72 Aligned_cols=60 Identities=28% Similarity=0.401 Sum_probs=30.7
Q ss_pred CceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCccc
Q 040113 747 DILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFL 808 (887)
Q Consensus 747 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~ 808 (887)
+.++.|+|++|.|+ .+|.++..++.|+.||++.|.+. ..|..+..|.+|.+||.-+|.+.
T Consensus 77 ~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 77 PTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred chhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 34455555555555 44555555555555555555554 33444444555555555555444
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.69 E-value=2.6e-05 Score=55.47 Aligned_cols=17 Identities=65% Similarity=0.888 Sum_probs=6.8
Q ss_pred ccCCCCCCEEeCCCCcc
Q 040113 791 LGNLTNLESLDLSNNNF 807 (887)
Q Consensus 791 l~~L~~L~~L~Ls~N~l 807 (887)
+++|++|+.|++++|++
T Consensus 20 l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 20 LSNLPNLETLNLSNNPI 36 (44)
T ss_dssp GTTCTTSSEEEETSSCC
T ss_pred HhCCCCCCEEEecCCCC
Confidence 33344444444444433
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.62 E-value=4.7e-05 Score=54.15 Aligned_cols=37 Identities=35% Similarity=0.548 Sum_probs=32.1
Q ss_pred ceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccc
Q 040113 748 ILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQG 785 (887)
Q Consensus 748 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 785 (887)
.|++|++++|+|+ .+|..+++|++|+.|++++|+++.
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 5899999999999 567789999999999999999984
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.54 E-value=0.00015 Score=68.35 Aligned_cols=129 Identities=20% Similarity=0.183 Sum_probs=87.5
Q ss_pred CeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCC
Q 040113 551 EILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGD 630 (887)
Q Consensus 551 ~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~ 630 (887)
+.+++.+.++. .-..++....+...+||++|.+... ..|..++.|.+|.+++|.|+.+.|.--.-+++|..|.|.+
T Consensus 22 ~e~~LR~lkip--~ienlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGLKIP--VIENLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccccccccccc--chhhccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 44555555443 1122334444677888888887543 3567788888899999998877776666677888999998
Q ss_pred CcCCCCC-CccccCCCCCCEEEccCCcccccCC-CCccccCCCCCCEEEcCCCcC
Q 040113 631 NQIRDIF-PSWLGTLPNLTVLILQSNKFYGIIR-EPRIDCGFSKLRIIDLSNNRF 683 (887)
Q Consensus 631 N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~~~l~~L~~L~Ls~N~l 683 (887)
|.|.... -..+..+|.|++|.+-+|+.+..-. .....+.+++|+.||.++=..
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 8876541 1346778899999998888765421 122345678999999876543
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.52 E-value=6.4e-05 Score=87.81 Aligned_cols=106 Identities=28% Similarity=0.343 Sum_probs=50.6
Q ss_pred CCCCEEECCCCCC-CccCCccccC-CCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCC
Q 040113 152 SRLSYLNLSHSSF-FGQIPSEILE-LVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANL 229 (887)
Q Consensus 152 ~~L~~L~Ls~n~~-~~~~p~~l~~-l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l 229 (887)
.+|++||+++... ...-|..++. +|.|++|.+++-.+ ....+.....++++|..||+++++++.. ..++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~-----~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~L 194 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF-----DNDDFSQLCASFPNLRSLDISGTNISNL--SGISRL 194 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCcee-----cchhHHHHhhccCccceeecCCCCccCc--HHHhcc
Confidence 3566666666432 2222334443 56666666655331 1123444455556666666665555443 345555
Q ss_pred CCCCEEEcccCCCCC-ccccccCCCCCCcEEeCcCC
Q 040113 230 SSLTFLSLHSCGLQG-RIQSSLGNLSKLLHLDLSLN 264 (887)
Q Consensus 230 ~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n 264 (887)
++|++|.+.+=.+.. ..-..+.++++|++||+|..
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 555555554433321 11122344555555555544
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.51 E-value=3.9e-05 Score=89.53 Aligned_cols=135 Identities=24% Similarity=0.218 Sum_probs=83.3
Q ss_pred CCCCeEECCCCCCCCCCCCcccc-CCCCCCEEECCCCCCCc-cCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhc
Q 040113 127 VHLEWLNLAFNDFKSSEIPSEII-NLSRLSYLNLSHSSFFG-QIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEK 204 (887)
Q Consensus 127 ~~L~~L~L~~n~~~~~~lp~~~~-~l~~L~~L~Ls~n~~~~-~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~ 204 (887)
.+|++||+++...-...-|..++ .||.|++|.+++-.+.. .+-.-..++++|++||+|++.+..+ ..+++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--------~GIS~ 193 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--------SGISR 193 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--------HHHhc
Confidence 46778888775543222334444 47888888887765532 2233344678888888888875544 36778
Q ss_pred CCCCCEEEccCCCCCC-CchhhhcCCCCCCEEEcccCCCCCcc--c----cccCCCCCCcEEeCcCCCCCCc
Q 040113 205 LSNLETLDLGYVSIRS-TIPHNLANLSSLTFLSLHSCGLQGRI--Q----SSLGNLSKLLHLDLSLNELLGE 269 (887)
Q Consensus 205 l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~--~----~~l~~l~~L~~L~Ls~n~l~~~ 269 (887)
+++|++|.+.+-.+.. ..-..+..+++|++||+|........ . +.-..+|+|+.||.|++.+...
T Consensus 194 LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 194 LKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred cccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 8888888877766654 33445777888888888876644221 0 1112356666666666655543
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.50 E-value=0.00031 Score=75.45 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=25.9
Q ss_pred cCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCC-CcccChhhhcCCcccEEecccC
Q 040113 399 VSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCN-LIEFPNFLKNQHHLMLLDLSSN 460 (887)
Q Consensus 399 ~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~-l~~~~~~l~~~~~L~~L~Ls~n 460 (887)
..+++++.|++++|.+..++. .+.+|+.|.+++|. +..+|..+. ++|+.|++++|
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~-----LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV-----LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC-----CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 345666667766665554442 22345555555442 223333221 34444444444
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.26 E-value=0.00056 Score=64.67 Aligned_cols=84 Identities=23% Similarity=0.190 Sum_probs=41.2
Q ss_pred CCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEE
Q 040113 255 KLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLD 334 (887)
Q Consensus 255 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 334 (887)
....+||++|.+... ..|..++.|.+|.+.+|+|+...|.--.-+++|+.|.|.+|.+. .+.+-.-+..++.|+.|.
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceee
Confidence 445556666655321 23445556666666666665444443344455666666665554 111111134455555555
Q ss_pred ccCCCCC
Q 040113 335 FTSNKFS 341 (887)
Q Consensus 335 L~~n~l~ 341 (887)
+-+|..+
T Consensus 120 ll~Npv~ 126 (233)
T KOG1644|consen 120 LLGNPVE 126 (233)
T ss_pred ecCCchh
Confidence 5555443
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.61 E-value=0.0013 Score=65.04 Aligned_cols=67 Identities=28% Similarity=0.366 Sum_probs=34.0
Q ss_pred CCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCc
Q 040113 374 NLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLI 440 (887)
Q Consensus 374 ~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~ 440 (887)
.+++|++|.++.|..............+++|+++++++|++..+..+.....+.+|..|++.+|..+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 3555666666666332222222224445666666666666665554444444455555555555444
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.58 E-value=0.00076 Score=77.70 Aligned_cols=110 Identities=26% Similarity=0.122 Sum_probs=49.0
Q ss_pred CCCCCEEEccCCCCCCC--chhhhcCCCCCCEEEcccC-CCCCcc----ccccCCCCCCcEEeCcCCC-CCCcchhhcc-
Q 040113 205 LSNLETLDLGYVSIRST--IPHNLANLSSLTFLSLHSC-GLQGRI----QSSLGNLSKLLHLDLSLNE-LLGELPVSIG- 275 (887)
Q Consensus 205 l~~L~~L~L~~n~~~~~--~~~~l~~l~~L~~L~L~~n-~l~~~~----~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~- 275 (887)
++.|+.|.+..+.-... .......+++|+.|+++++ ...... ......+++|+.|+++++. ++...-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45555555555432222 2233445556666665552 111111 1122344556666666555 3333222222
Q ss_pred CCCCCCEEEccCCC-CCCccch-hhhCCCCCCEEEccCCcC
Q 040113 276 NLHSLKKLDLSINN-LSGELPT-SIQNLVSLEELDLSFNKL 314 (887)
Q Consensus 276 ~l~~L~~L~L~~n~-l~~~~~~-~l~~l~~L~~L~L~~n~l 314 (887)
.+++|++|.+..|. ++...-. ....++.|++|+++.+..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 25566666655554 3332222 223455566666665544
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.50 E-value=0.0058 Score=55.85 Aligned_cols=103 Identities=18% Similarity=0.281 Sum_probs=35.3
Q ss_pred hhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCC
Q 040113 544 LCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKL 623 (887)
Q Consensus 544 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 623 (887)
|.++++|+.+.+.. .+.......|..+. +|+.+.+.++ +.......|..+.+++.+.+.+ .+.......|..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~-~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCT-SLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-T-T-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccc-cccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 44455555555543 23323333344443 3555555443 3333334444444455554433 2222333344444444
Q ss_pred cEEeCCCCcCCCCCCccccCCCCCCEEEc
Q 040113 624 EFLDIGDNQIRDIFPSWLGTLPNLTVLIL 652 (887)
Q Consensus 624 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 652 (887)
+.+++..+ +..+....|.+. +|+.+.+
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~ 110 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINI 110 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEE
Confidence 44444433 333333333333 4444433
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.45 E-value=0.00066 Score=78.17 Aligned_cols=63 Identities=32% Similarity=0.262 Sum_probs=29.3
Q ss_pred CCCCCCEEEcccCC-CCCccccccC-CCCCCcEEeCcCCC-CCCc-chhhccCCCCCCEEEccCCCC
Q 040113 228 NLSSLTFLSLHSCG-LQGRIQSSLG-NLSKLLHLDLSLNE-LLGE-LPVSIGNLHSLKKLDLSINNL 290 (887)
Q Consensus 228 ~l~~L~~L~L~~n~-l~~~~~~~l~-~l~~L~~L~Ls~n~-l~~~-~p~~l~~l~~L~~L~L~~n~l 290 (887)
.+++|+.|+++++. +++..-..+. .+++|++|.+.++. ++.. +-.....+++|++|++++|..
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 34555555555555 3332222222 25556666555554 3322 112223455566666665544
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.30 E-value=0.0027 Score=62.95 Aligned_cols=36 Identities=25% Similarity=0.198 Sum_probs=16.7
Q ss_pred CCCCCCEEEcCCCCCcccc-chhhhhcCCCCCCEEEc
Q 040113 374 NLTQLITLDLSQNSYRGTM-ELDFLLVSLKNLEVLSL 409 (887)
Q Consensus 374 ~l~~L~~L~L~~n~l~~~~-~~~~~l~~l~~L~~L~L 409 (887)
.+++|..|++.+|..+... .....+.-+++|++|+-
T Consensus 114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 3445555566555544321 11223445555555543
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.29 E-value=0.024 Score=51.68 Aligned_cols=117 Identities=18% Similarity=0.196 Sum_probs=66.1
Q ss_pred CCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEc
Q 040113 525 RTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDL 604 (887)
Q Consensus 525 ~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 604 (887)
+++.+.+.+ .+...-...|..+++|+.+.+.++ +.......|..+. +++.+.+.+ .+.......|..+++|+.+++
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCK-SLESITFPN-NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-T-T-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccc-ccccccccc-ccccccccccccccccccccc
Confidence 445555443 333344456888889999999885 6655566777776 699999976 555566678888999999999
Q ss_pred cCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCC
Q 040113 605 SHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLT 648 (887)
Q Consensus 605 s~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 648 (887)
..+ +.......|.++ .|+.+.+.. .+..+....|.++++|+
T Consensus 89 ~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 89 PSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred Ccc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 876 666777789888 999999886 56666666777777664
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.95 E-value=0.00044 Score=68.40 Aligned_cols=83 Identities=28% Similarity=0.279 Sum_probs=37.9
Q ss_pred CCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCcc-chhhhCCCCCCEEE
Q 040113 230 SSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGEL-PTSIQNLVSLEELD 308 (887)
Q Consensus 230 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~ 308 (887)
.+.+.|++.+|.+.++ .....++.|++|.|+-|+|+.. ..+..|++|++|+|..|.|.... -..+.++++|+.|.
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3445555555555432 2234455555555555555432 22444555555555555544211 11234444444444
Q ss_pred ccCCcCCC
Q 040113 309 LSFNKLSG 316 (887)
Q Consensus 309 L~~n~l~~ 316 (887)
|..|...|
T Consensus 95 L~ENPCc~ 102 (388)
T KOG2123|consen 95 LDENPCCG 102 (388)
T ss_pred hccCCccc
Confidence 44444433
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.74 E-value=0.00064 Score=67.25 Aligned_cols=63 Identities=30% Similarity=0.315 Sum_probs=25.8
Q ss_pred CCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCcc-ccccCCCCCccEEEccCCcCCc
Q 040113 300 NLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGEL-HASIGNLRSLEVLAIGRCNFSG 366 (887)
Q Consensus 300 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~i~~ 366 (887)
+++.|+.|.|+-|+++..-| +..+++|++|+|..|.|.... ...+.++++|+.|.|..|...|
T Consensus 39 kMp~lEVLsLSvNkIssL~p----l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAP----LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCG 102 (388)
T ss_pred hcccceeEEeeccccccchh----HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCccc
Confidence 34444444444444443222 334444444444444443211 1223344444444444444433
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.37 E-value=0.0066 Score=35.77 Aligned_cols=12 Identities=67% Similarity=0.814 Sum_probs=5.1
Q ss_pred CCEEeCCCCccc
Q 040113 797 LESLDLSNNNFL 808 (887)
Q Consensus 797 L~~L~Ls~N~l~ 808 (887)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.24 E-value=0.0069 Score=35.70 Aligned_cols=19 Identities=47% Similarity=0.761 Sum_probs=9.5
Q ss_pred CCEEeCCCCcccccCCcccc
Q 040113 773 LQVLNLDNNNLQGHIPSCLG 792 (887)
Q Consensus 773 L~~L~Ls~N~l~~~~p~~l~ 792 (887)
|++|||++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4444444
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.13 E-value=0.0014 Score=73.44 Aligned_cols=65 Identities=37% Similarity=0.371 Sum_probs=31.7
Q ss_pred cCCCCCCcEEeCcCCCCCCcch----hhccCC-CCCCEEEccCCCCCCc----cchhhhCCCCCCEEEccCCcC
Q 040113 250 LGNLSKLLHLDLSLNELLGELP----VSIGNL-HSLKKLDLSINNLSGE----LPTSIQNLVSLEELDLSFNKL 314 (887)
Q Consensus 250 l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l-~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l 314 (887)
+...+.|+.|++++|.+.+.-. ..+... ..+++|++..|.+++. +.+.+.....++.++++.|.+
T Consensus 111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence 3444555555555555543211 111121 3455555555655433 334445555666666666655
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.20 E-value=0.0049 Score=69.09 Aligned_cols=186 Identities=28% Similarity=0.313 Sum_probs=92.9
Q ss_pred CCeEECCCCCCCCCC---CCccccCCCCCCEEECCCCCCCccCCc----cccCC-CCCcEEEccCCCCCCccccCCChHH
Q 040113 129 LEWLNLAFNDFKSSE---IPSEIINLSRLSYLNLSHSSFFGQIPS----EILEL-VNLVSLDLSLNSGYGLELQKPNFAN 200 (887)
Q Consensus 129 L~~L~L~~n~~~~~~---lp~~~~~l~~L~~L~Ls~n~~~~~~p~----~l~~l-~~L~~L~l~~n~~~~l~~~~~~~~~ 200 (887)
+..|.|.+|.+.... +-..+.....|+.|++++|.+.+.--. .+... ..|++|++..|.+... ....+..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~--g~~~l~~ 166 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSE--GAAPLAA 166 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhccccccc--chHHHHH
Confidence 445555555544321 112234445555555555555322111 11111 2344455554442211 1123344
Q ss_pred HhhcCCCCCEEEccCCCCCC----Cchhhhc----CCCCCCEEEcccCCCCCc----cccccCCCCC-CcEEeCcCCCCC
Q 040113 201 LVEKLSNLETLDLGYVSIRS----TIPHNLA----NLSSLTFLSLHSCGLQGR----IQSSLGNLSK-LLHLDLSLNELL 267 (887)
Q Consensus 201 ~~~~l~~L~~L~L~~n~~~~----~~~~~l~----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~-L~~L~Ls~n~l~ 267 (887)
.+.....++.++++.|.+.. .++..+. ...++++|.+++|.++.. ....+...+. +..|++..|.+.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 45555556666666555421 1122222 356677777777766532 1122334444 566777777765
Q ss_pred Cc----chhhccCC-CCCCEEEccCCCCCCcc----chhhhCCCCCCEEEccCCcCCC
Q 040113 268 GE----LPVSIGNL-HSLKKLDLSINNLSGEL----PTSIQNLVSLEELDLSFNKLSG 316 (887)
Q Consensus 268 ~~----~p~~l~~l-~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~ 316 (887)
+. ..+.+..+ ..+++++++.|.++... ...+..++.++++.++.|.+..
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 33 22334444 56778888888876543 3445566788888888887753
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.47 E-value=0.1 Score=49.94 Aligned_cols=82 Identities=21% Similarity=0.210 Sum_probs=39.9
Q ss_pred CCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCC-CCCccccccCCCCCccE
Q 040113 278 HSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNK-FSGELHASIGNLRSLEV 356 (887)
Q Consensus 278 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~ 356 (887)
..++.++-++..|..+--+.+..++.++.|.+.+|.-.+..--...-+-.++|+.|++++|. |+..--..+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 34566666776666665566666666676666666543222111111123445555555442 33333333334444444
Q ss_pred EEc
Q 040113 357 LAI 359 (887)
Q Consensus 357 L~L 359 (887)
|.+
T Consensus 181 L~l 183 (221)
T KOG3864|consen 181 LHL 183 (221)
T ss_pred HHh
Confidence 443
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.82 E-value=0.5 Score=29.01 Aligned_cols=14 Identities=57% Similarity=0.752 Sum_probs=6.3
Q ss_pred CCCCEEeCCCCccc
Q 040113 795 TNLESLDLSNNNFL 808 (887)
Q Consensus 795 ~~L~~L~Ls~N~l~ 808 (887)
++|++|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34444444444444
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.82 E-value=0.5 Score=29.01 Aligned_cols=14 Identities=57% Similarity=0.752 Sum_probs=6.3
Q ss_pred CCCCEEeCCCCccc
Q 040113 795 TNLESLDLSNNNFL 808 (887)
Q Consensus 795 ~~L~~L~Ls~N~l~ 808 (887)
++|++|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34444444444444
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.80 E-value=0.032 Score=54.17 Aligned_cols=83 Identities=19% Similarity=0.161 Sum_probs=71.1
Q ss_pred CceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeec
Q 040113 747 DILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNV 826 (887)
Q Consensus 747 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~l 826 (887)
...+.||++.|++. ..-..|+-++.|..||++.|++. ..|..++++..+..+++..|..+ ..|.++..++.+++++.
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 45788999999986 44556777888999999999987 78899999999999999999988 57888999999999999
Q ss_pred ccCccc
Q 040113 827 SDNYLT 832 (887)
Q Consensus 827 s~N~l~ 832 (887)
-.|.+.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 988865
No 80
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=86.40 E-value=0.44 Score=25.95 Aligned_cols=12 Identities=67% Similarity=1.024 Sum_probs=4.6
Q ss_pred CCCEEEcCCCcC
Q 040113 672 KLRIIDLSNNRF 683 (887)
Q Consensus 672 ~L~~L~Ls~N~l 683 (887)
+|+.|++++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 345555555554
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.40 E-value=0.034 Score=53.98 Aligned_cols=82 Identities=18% Similarity=0.115 Sum_probs=60.3
Q ss_pred CCcEEEEEcCCCcccccccCCcccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCc
Q 040113 100 TGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLV 179 (887)
Q Consensus 100 ~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~ 179 (887)
..+|+.||++.+.+...-. .+..++.|..||++.|.+.- +|..++.+..++.+++..|.. ...|.++++.+.++
T Consensus 41 ~kr~tvld~~s~r~vn~~~---n~s~~t~~~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~~-~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGK---NFSILTRLVRLDLSKNQIKF--LPKDAKQQRETVNAASHKNNH-SQQPKSQKKEPHPK 114 (326)
T ss_pred cceeeeehhhhhHHHhhcc---chHHHHHHHHHhccHhhHhh--ChhhHHHHHHHHHHHhhccch-hhCCccccccCCcc
Confidence 4688888888887653321 56667778888888887763 677888888888888877766 46777778888888
Q ss_pred EEEccCCC
Q 040113 180 SLDLSLNS 187 (887)
Q Consensus 180 ~L~l~~n~ 187 (887)
++++-.+.
T Consensus 115 ~~e~k~~~ 122 (326)
T KOG0473|consen 115 KNEQKKTE 122 (326)
T ss_pred hhhhccCc
Confidence 87777664
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.92 E-value=0.74 Score=28.23 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=13.5
Q ss_pred ccCCCEEeCCCCcccccCCccc
Q 040113 770 LKGLQVLNLDNNNLQGHIPSCL 791 (887)
Q Consensus 770 l~~L~~L~Ls~N~l~~~~p~~l 791 (887)
+++|+.|+|++|+++...+..|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3567777777777774433333
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.92 E-value=0.74 Score=28.23 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=13.5
Q ss_pred ccCCCEEeCCCCcccccCCccc
Q 040113 770 LKGLQVLNLDNNNLQGHIPSCL 791 (887)
Q Consensus 770 l~~L~~L~Ls~N~l~~~~p~~l 791 (887)
+++|+.|+|++|+++...+..|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3567777777777774433333
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=82.64 E-value=0.32 Score=29.23 Aligned_cols=14 Identities=64% Similarity=0.854 Sum_probs=5.5
Q ss_pred CCCEEeCCCCcccc
Q 040113 796 NLESLDLSNNNFLG 809 (887)
Q Consensus 796 ~L~~L~Ls~N~l~~ 809 (887)
+|++|+|++|+++.
T Consensus 3 ~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 3 NLETLDLSNNQITD 16 (24)
T ss_dssp T-SEEE-TSSBEHH
T ss_pred CCCEEEccCCcCCH
Confidence 44444444444443
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.61 E-value=0.72 Score=44.34 Aligned_cols=40 Identities=20% Similarity=0.186 Sum_probs=21.2
Q ss_pred CCCCCEEEcCCCcCcccCChhhhhccccchhcccCCcccc
Q 040113 670 FSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYL 709 (887)
Q Consensus 670 l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~ 709 (887)
.++|+.|+|++|+-..+---.++..+++|+.+.+.+++++
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 4566777777665332333334455555655555555444
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=75.24 E-value=11 Score=41.32 Aligned_cols=59 Identities=19% Similarity=0.260 Sum_probs=33.9
Q ss_pred eeEEEeecCcCCccChhh---hhcccCCCEEeCCCCcccc----cCCccccCCCCCCEEeCCCCcc
Q 040113 749 LTSIILSSNRFDGMIPTS---IANLKGLQVLNLDNNNLQG----HIPSCLGNLTNLESLDLSNNNF 807 (887)
Q Consensus 749 L~~L~Ls~N~l~~~ip~~---l~~l~~L~~L~Ls~N~l~~----~~p~~l~~L~~L~~L~Ls~N~l 807 (887)
++.+.++.+.+....-.. +..-+.++.|++++|.... .+|.....-.+++....+.|..
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 556667777765433222 2334667788888887643 4455555445566555555543
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=71.34 E-value=2.5 Score=25.87 Aligned_cols=17 Identities=47% Similarity=0.651 Sum_probs=12.9
Q ss_pred CCCeeecccCcccccCCC
Q 040113 820 FLEFFNVSDNYLTGPIPQ 837 (887)
Q Consensus 820 ~L~~L~ls~N~l~g~iP~ 837 (887)
+|++|++++|+|+ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 5788888888887 4664
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=69.05 E-value=3.9 Score=25.17 Aligned_cols=15 Identities=67% Similarity=0.826 Sum_probs=9.5
Q ss_pred CCCCCEEeCCCCccc
Q 040113 794 LTNLESLDLSNNNFL 808 (887)
Q Consensus 794 L~~L~~L~Ls~N~l~ 808 (887)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356666677776664
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=62.91 E-value=40 Score=37.14 Aligned_cols=35 Identities=14% Similarity=-0.034 Sum_probs=17.5
Q ss_pred CCCEEEcCCCCCccccchhhhhcCCCCCCEEEccC
Q 040113 377 QLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSS 411 (887)
Q Consensus 377 ~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~ 411 (887)
.+++|....|.+.+..........-+..+.+++..
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agr 389 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGR 389 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccc
Confidence 46666666666555443322234444555555443
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=51.51 E-value=11 Score=23.53 Aligned_cols=14 Identities=50% Similarity=0.631 Sum_probs=7.9
Q ss_pred CCCCEEeCCCCccc
Q 040113 795 TNLESLDLSNNNFL 808 (887)
Q Consensus 795 ~~L~~L~Ls~N~l~ 808 (887)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 34556666666553
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=30.59 E-value=21 Score=40.10 Aligned_cols=13 Identities=0% Similarity=0.209 Sum_probs=6.0
Q ss_pred CCCCCCCCCCCCC
Q 040113 68 WSSGCRPKAASWK 80 (887)
Q Consensus 68 ~~~~~~~~~~~w~ 80 (887)
.+....+.-.+|.
T Consensus 28 ~~~~p~~~r~~~~ 40 (585)
T KOG3763|consen 28 YTYQPHQRRPTFH 40 (585)
T ss_pred CCCCccccCCCce
Confidence 3334444455554
No 92
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=25.40 E-value=48 Score=20.10 Aligned_cols=11 Identities=36% Similarity=0.392 Sum_probs=6.0
Q ss_pred CCCCEEECCCC
Q 040113 152 SRLSYLNLSHS 162 (887)
Q Consensus 152 ~~L~~L~Ls~n 162 (887)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45555555555
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=23.86 E-value=45 Score=37.56 Aligned_cols=14 Identities=7% Similarity=0.133 Sum_probs=6.9
Q ss_pred CCccEEEccCCcCC
Q 040113 352 RSLEVLAIGRCNFS 365 (887)
Q Consensus 352 ~~L~~L~L~~n~i~ 365 (887)
+.+..+.+++|++.
T Consensus 218 p~i~sl~lsnNrL~ 231 (585)
T KOG3763|consen 218 PEILSLSLSNNRLY 231 (585)
T ss_pred cceeeeecccchhh
Confidence 44445555555443
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=22.90 E-value=45 Score=45.26 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=28.4
Q ss_pred EeecCcCCccChhhhhcccCCCEEeCCCCccc
Q 040113 753 ILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQ 784 (887)
Q Consensus 753 ~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 784 (887)
||++|+|+...+..|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999777888899999999999999875
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.79 E-value=56 Score=44.45 Aligned_cols=34 Identities=32% Similarity=0.435 Sum_probs=30.7
Q ss_pred eCCCCcccccCCccccCCCCCCEEeCCCCccccc
Q 040113 777 NLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQ 810 (887)
Q Consensus 777 ~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ 810 (887)
||++|+|+..-+..|..|.+|+.|+|++|.+.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccc
Confidence 6899999988888999999999999999998765
Done!