Query 040113
Match_columns 887
No_of_seqs 802 out of 5277
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 07:57:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040113.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040113hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.6E-89 1.9E-93 824.9 50.7 718 38-875 9-759 (768)
2 3rgz_A Protein brassinosteroid 100.0 6.7E-69 2.3E-73 649.5 41.9 631 102-833 78-742 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-57 3.7E-62 547.1 53.3 607 106-837 9-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 5.5E-57 1.9E-61 540.9 52.7 598 130-860 7-627 (680)
5 3t6q_A CD180 antigen; protein- 100.0 5.2E-52 1.8E-56 491.0 45.3 520 207-836 34-564 (606)
6 3t6q_A CD180 antigen; protein- 100.0 1.2E-51 4.3E-56 487.8 45.3 517 128-812 34-564 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 7.4E-51 2.5E-55 481.1 40.5 519 152-837 32-563 (606)
8 4eco_A Uncharacterized protein 100.0 1.6E-52 5.5E-57 494.5 22.9 512 40-658 29-600 (636)
9 3vq2_A TLR4, TOLL-like recepto 100.0 2.1E-50 7.3E-55 477.2 39.9 520 207-860 33-563 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 1.3E-49 4.5E-54 485.9 38.7 543 152-867 24-591 (844)
11 3j0a_A TOLL-like receptor 5; m 100.0 1.3E-48 4.4E-53 477.2 39.0 525 89-694 14-570 (844)
12 4ecn_A Leucine-rich repeat pro 100.0 1.6E-48 5.5E-53 466.5 33.5 510 38-683 266-863 (876)
13 2z63_A TOLL-like receptor 4, v 100.0 1.5E-46 5E-51 441.3 36.6 499 208-838 30-537 (570)
14 2z63_A TOLL-like receptor 4, v 100.0 1.2E-45 4.2E-50 433.4 37.9 496 153-813 29-536 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 2.8E-45 9.7E-50 428.1 35.6 503 88-812 3-514 (549)
16 2z81_A CD282 antigen, TOLL-lik 100.0 7.2E-45 2.5E-49 424.7 36.4 476 230-838 26-516 (549)
17 4g8a_A TOLL-like receptor 4; l 100.0 6.1E-43 2.1E-47 416.4 41.2 519 128-833 53-581 (635)
18 4eco_A Uncharacterized protein 100.0 4.4E-45 1.5E-49 431.0 21.8 463 206-833 81-601 (636)
19 2z7x_B TOLL-like receptor 1, v 100.0 5E-44 1.7E-48 414.3 25.6 229 548-836 247-485 (520)
20 4ecn_A Leucine-rich repeat pro 100.0 2.6E-43 8.8E-48 421.6 28.0 75 755-832 790-864 (876)
21 2z7x_B TOLL-like receptor 1, v 100.0 4.4E-43 1.5E-47 406.4 27.5 424 204-692 43-489 (520)
22 4g8a_A TOLL-like receptor 4; l 100.0 3.1E-41 1.1E-45 401.6 38.4 555 66-695 2-591 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.3E-41 4.3E-46 397.4 26.0 184 597-837 331-515 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.5E-40 8.4E-45 386.5 27.9 450 207-692 53-518 (562)
25 1ogq_A PGIP-2, polygalacturona 100.0 2.3E-39 7.7E-44 347.9 17.4 293 37-387 2-302 (313)
26 1jl5_A Outer protein YOPM; leu 100.0 5.7E-38 2E-42 353.8 25.7 117 544-684 233-350 (454)
27 3v47_A TOLL-like receptor 5B a 100.0 3.1E-37 1.1E-41 351.1 31.2 377 230-689 30-413 (455)
28 3v47_A TOLL-like receptor 5B a 100.0 2E-36 7E-41 344.4 32.7 368 207-662 31-412 (455)
29 1jl5_A Outer protein YOPM; leu 100.0 4.3E-37 1.5E-41 346.6 25.9 378 301-838 10-417 (454)
30 3bz5_A Internalin-J, INLJ; leu 100.0 9E-36 3.1E-40 336.1 26.4 363 201-696 37-399 (457)
31 3bz5_A Internalin-J, INLJ; leu 100.0 1.3E-34 4.3E-39 326.8 30.9 210 122-365 37-246 (457)
32 1o6v_A Internalin A; bacterial 100.0 2.7E-33 9.3E-38 318.8 33.9 127 545-684 196-322 (466)
33 1o6v_A Internalin A; bacterial 100.0 9.1E-33 3.1E-37 314.4 34.1 106 545-659 284-389 (466)
34 1ogq_A PGIP-2, polygalacturona 100.0 4.1E-34 1.4E-38 306.9 18.3 260 548-865 50-313 (313)
35 2id5_A Lingo-1, leucine rich r 100.0 1.5E-33 5.1E-38 322.5 23.8 344 433-859 17-360 (477)
36 2id5_A Lingo-1, leucine rich r 100.0 7.8E-32 2.7E-36 308.3 27.3 323 453-859 14-337 (477)
37 3o6n_A APL1; leucine-rich repe 100.0 1.9E-31 6.6E-36 296.4 29.0 350 76-491 3-354 (390)
38 3oja_B Anopheles plasmodium-re 100.0 2.1E-30 7.3E-35 304.0 30.1 313 124-491 48-360 (597)
39 4fmz_A Internalin; leucine ric 100.0 1.2E-29 4E-34 277.5 33.1 306 124-489 41-346 (347)
40 3o6n_A APL1; leucine-rich repe 100.0 2E-30 6.8E-35 288.2 26.4 318 253-693 44-361 (390)
41 4fcg_A Uncharacterized protein 100.0 1.6E-31 5.3E-36 288.5 15.0 273 37-364 23-313 (328)
42 3oja_B Anopheles plasmodium-re 100.0 4.7E-30 1.6E-34 301.0 26.7 318 253-693 50-367 (597)
43 4fmz_A Internalin; leucine ric 100.0 6.5E-29 2.2E-33 271.6 32.9 303 101-463 44-346 (347)
44 1z7x_W Ribonuclease inhibitor; 100.0 3.8E-32 1.3E-36 309.7 -4.2 117 199-315 49-183 (461)
45 1xku_A Decorin; proteoglycan, 100.0 1.2E-27 4.1E-32 259.3 28.4 270 127-412 52-329 (330)
46 1xku_A Decorin; proteoglycan, 100.0 1.1E-27 3.8E-32 259.5 28.1 292 129-461 33-330 (330)
47 1z7x_W Ribonuclease inhibitor; 100.0 7.8E-31 2.7E-35 298.8 1.2 360 101-463 3-411 (461)
48 2ft3_A Biglycan; proteoglycan, 100.0 8.5E-28 2.9E-32 260.6 24.1 284 105-412 37-330 (332)
49 2ft3_A Biglycan; proteoglycan, 100.0 7.1E-27 2.4E-31 253.3 26.3 289 303-682 34-331 (332)
50 3ogk_B Coronatine-insensitive 100.0 6.1E-30 2.1E-34 301.3 0.1 445 87-635 40-527 (592)
51 2z80_A TOLL-like receptor 2, v 99.9 3.2E-27 1.1E-31 258.4 20.2 285 85-393 26-318 (353)
52 2z80_A TOLL-like receptor 2, v 99.9 1.8E-27 6.1E-32 260.5 16.1 258 524-837 52-319 (353)
53 3zyi_A Leucine-rich repeat-con 99.9 1.7E-25 5.9E-30 253.3 29.3 230 548-833 75-304 (452)
54 3zyj_A Leucine-rich repeat-con 99.9 1.1E-25 3.7E-30 254.0 24.4 249 526-833 45-293 (440)
55 3zyi_A Leucine-rich repeat-con 99.9 9.5E-26 3.3E-30 255.4 24.0 252 549-859 55-307 (452)
56 2z66_A Variable lymphocyte rec 99.9 2.7E-26 9.2E-31 245.9 18.3 231 548-834 28-263 (306)
57 4fcg_A Uncharacterized protein 99.9 4.1E-26 1.4E-30 246.1 18.9 271 75-389 31-314 (328)
58 3zyj_A Leucine-rich repeat-con 99.9 1.6E-25 5.4E-30 252.6 24.3 247 507-810 47-294 (440)
59 1wwl_A Monocyte differentiatio 99.9 7.2E-28 2.5E-32 258.4 4.6 246 527-834 46-311 (312)
60 1ozn_A Reticulon 4 receptor; N 99.9 5.1E-26 1.7E-30 240.9 18.7 228 551-836 14-242 (285)
61 2z66_A Variable lymphocyte rec 99.9 4.2E-26 1.4E-30 244.4 18.0 255 88-393 6-265 (306)
62 1ozn_A Reticulon 4 receptor; N 99.9 1E-25 3.6E-30 238.5 18.3 235 548-838 32-267 (285)
63 3ogk_B Coronatine-insensitive 99.9 9E-28 3.1E-32 282.7 2.4 381 101-492 112-529 (592)
64 1wwl_A Monocyte differentiatio 99.9 6.2E-27 2.1E-31 251.1 4.7 248 125-390 41-310 (312)
65 3g06_A SSPH2 (leucine-rich rep 99.9 2.7E-24 9.3E-29 249.2 24.0 262 451-837 41-302 (622)
66 3o53_A Protein LRIM1, AGAP0063 99.9 1E-25 3.5E-30 242.2 9.2 266 505-838 12-282 (317)
67 3g06_A SSPH2 (leucine-rich rep 99.9 9.7E-24 3.3E-28 244.6 25.1 269 427-819 40-308 (622)
68 3oja_A Leucine-rich immune mol 99.9 3.4E-25 1.2E-29 252.1 12.1 217 548-832 34-250 (487)
69 2z62_A TOLL-like receptor 4, v 99.9 2.2E-23 7.5E-28 219.5 22.9 227 553-838 12-243 (276)
70 2o6q_A Variable lymphocyte rec 99.9 1.7E-23 5.8E-28 219.4 21.7 216 86-314 2-217 (270)
71 3oja_A Leucine-rich immune mol 99.9 5.6E-25 1.9E-29 250.2 11.0 236 524-827 34-270 (487)
72 3o53_A Protein LRIM1, AGAP0063 99.9 1.9E-25 6.4E-30 240.2 6.5 261 102-412 11-272 (317)
73 2p1m_B Transport inhibitor res 99.9 3.3E-27 1.1E-31 278.1 -9.1 333 86-458 32-405 (594)
74 2p1m_B Transport inhibitor res 99.9 2.8E-26 9.5E-31 270.2 -2.2 109 544-654 428-540 (594)
75 2z62_A TOLL-like receptor 4, v 99.9 2.4E-22 8.2E-27 211.6 18.2 212 548-812 28-241 (276)
76 2o6q_A Variable lymphocyte rec 99.9 1.1E-21 3.9E-26 205.4 22.3 204 549-834 17-220 (270)
77 3rfs_A Internalin B, repeat mo 99.9 3.1E-22 1.1E-26 209.9 16.5 166 202-376 81-246 (272)
78 2ast_B S-phase kinase-associat 99.9 2.2E-23 7.6E-28 226.5 7.3 268 86-373 34-314 (336)
79 3rfs_A Internalin B, repeat mo 99.9 2.8E-22 9.5E-27 210.3 14.0 212 122-353 36-247 (272)
80 4glp_A Monocyte differentiatio 99.9 1.7E-22 5.8E-27 216.4 10.7 205 575-833 93-308 (310)
81 3goz_A Leucine-rich repeat-con 99.9 3E-23 1E-27 227.4 4.6 260 528-834 2-299 (362)
82 1p9a_G Platelet glycoprotein I 99.9 5.7E-21 2E-25 201.7 21.0 204 544-809 6-209 (290)
83 1p9a_G Platelet glycoprotein I 99.9 1.3E-20 4.4E-25 199.1 21.6 203 122-340 5-207 (290)
84 2ca6_A RAN GTPase-activating p 99.9 1.4E-22 4.8E-27 224.5 6.4 243 145-392 25-319 (386)
85 3m19_A Variable lymphocyte rec 99.9 1.2E-20 4.1E-25 195.3 18.9 192 87-317 3-194 (251)
86 2xwt_C Thyrotropin receptor; s 99.9 3.4E-21 1.2E-25 197.9 14.2 196 574-829 32-236 (239)
87 2ast_B S-phase kinase-associat 99.8 1.5E-21 5.1E-26 212.1 9.3 251 128-394 48-311 (336)
88 2xwt_C Thyrotropin receptor; s 99.8 1.4E-20 4.7E-25 193.4 15.4 204 539-806 25-237 (239)
89 3goz_A Leucine-rich repeat-con 99.8 1.5E-21 5.2E-26 213.8 8.1 184 206-391 80-299 (362)
90 2ca6_A RAN GTPase-activating p 99.8 1.1E-21 3.7E-26 217.3 6.8 245 122-368 27-319 (386)
91 1h6u_A Internalin H; cell adhe 99.8 8.2E-20 2.8E-24 194.9 20.8 173 122-315 36-208 (308)
92 4glp_A Monocyte differentiatio 99.8 1.7E-20 5.9E-25 200.8 13.4 202 206-415 91-307 (310)
93 3m19_A Variable lymphocyte rec 99.8 1.8E-19 6.1E-24 186.4 20.1 180 505-687 16-195 (251)
94 4ay9_X Follicle-stimulating ho 99.8 2.9E-20 9.9E-25 202.5 11.4 242 527-830 12-257 (350)
95 1h6u_A Internalin H; cell adhe 99.8 4.3E-19 1.5E-23 189.3 19.9 105 148-266 37-141 (308)
96 4ay9_X Follicle-stimulating ho 99.8 3.5E-19 1.2E-23 193.9 17.6 244 505-806 11-257 (350)
97 3cvr_A Invasion plasmid antige 99.8 2.2E-19 7.6E-24 205.4 14.7 190 548-820 59-255 (571)
98 3cvr_A Invasion plasmid antige 99.8 3.8E-19 1.3E-23 203.5 16.4 183 574-838 60-249 (571)
99 2o6s_A Variable lymphocyte rec 99.8 1.1E-18 3.6E-23 175.1 14.9 106 551-660 10-115 (208)
100 2o6s_A Variable lymphocyte rec 99.8 2.2E-18 7.7E-23 172.7 13.4 175 506-690 10-184 (208)
101 1h6t_A Internalin B; cell adhe 99.7 4.1E-17 1.4E-21 172.3 17.7 173 122-341 41-213 (291)
102 1m9s_A Internalin B; cell inva 99.7 8.4E-17 2.9E-21 186.3 19.6 187 105-316 25-211 (605)
103 2xot_A Amphoterin-induced prot 99.7 4.5E-17 1.5E-21 178.0 16.3 179 551-784 21-202 (361)
104 2v70_A SLIT-2, SLIT homolog 2 99.7 5.4E-17 1.9E-21 163.7 15.3 143 548-693 32-175 (220)
105 2v70_A SLIT-2, SLIT homolog 2 99.7 6E-17 2.1E-21 163.4 15.4 153 507-660 15-168 (220)
106 1h6t_A Internalin B; cell adhe 99.7 7E-17 2.4E-21 170.6 15.3 150 202-365 64-213 (291)
107 2v9t_B SLIT homolog 2 protein 99.7 9.5E-17 3.3E-21 161.9 15.5 142 548-692 32-173 (220)
108 3e6j_A Variable lymphocyte rec 99.7 1.7E-16 5.9E-21 161.2 17.5 62 85-164 15-76 (229)
109 2v9t_B SLIT homolog 2 protein 99.7 1E-16 3.4E-21 161.8 15.3 155 505-660 13-167 (220)
110 2xot_A Amphoterin-induced prot 99.7 5.1E-17 1.7E-21 177.5 13.0 179 507-688 22-206 (361)
111 4b8c_D Glucose-repressible alc 99.7 4.1E-18 1.4E-22 202.6 1.9 220 39-319 130-358 (727)
112 1m9s_A Internalin B; cell inva 99.7 2.4E-16 8.3E-21 182.5 16.6 191 127-342 21-211 (605)
113 3e6j_A Variable lymphocyte rec 99.7 5.7E-16 1.9E-20 157.4 16.5 137 548-688 40-176 (229)
114 4ezg_A Putative uncharacterize 99.7 1.4E-16 5E-21 157.8 11.8 110 226-341 84-194 (197)
115 1xeu_A Internalin C; cellular 99.7 7.4E-17 2.5E-21 167.6 8.6 100 574-684 20-119 (263)
116 1w8a_A SLIT protein; signaling 99.7 2.4E-16 8.3E-21 155.3 11.9 113 746-859 53-166 (192)
117 1dce_A Protein (RAB geranylger 99.7 2.1E-18 7.2E-23 198.6 -3.9 203 124-358 346-566 (567)
118 1dce_A Protein (RAB geranylger 99.7 8E-19 2.7E-23 202.1 -7.7 86 748-836 464-550 (567)
119 4ezg_A Putative uncharacterize 99.7 5.2E-16 1.8E-20 153.7 12.9 154 203-365 41-194 (197)
120 1xeu_A Internalin C; cellular 99.6 2.2E-16 7.7E-21 163.9 9.8 124 547-684 18-141 (263)
121 4b8c_D Glucose-repressible alc 99.6 7.8E-17 2.7E-21 191.6 5.7 93 590-688 217-309 (727)
122 1w8a_A SLIT protein; signaling 99.6 3.9E-15 1.3E-19 146.6 13.5 137 551-693 11-148 (192)
123 2wfh_A SLIT homolog 2 protein 99.5 3.7E-14 1.2E-18 139.5 14.0 137 551-694 13-149 (193)
124 2ell_A Acidic leucine-rich nuc 99.5 4.4E-14 1.5E-18 135.9 11.8 134 206-341 24-160 (168)
125 2ell_A Acidic leucine-rich nuc 99.5 2.2E-14 7.6E-19 138.0 9.1 135 547-684 23-160 (168)
126 2je0_A Acidic leucine-rich nuc 99.5 3.9E-14 1.3E-18 133.2 10.5 129 206-336 17-148 (149)
127 2wfh_A SLIT homolog 2 protein 99.5 4.9E-14 1.7E-18 138.6 11.4 127 732-859 16-143 (193)
128 2o6r_A Variable lymphocyte rec 99.5 1E-13 3.6E-18 134.5 13.5 134 549-688 8-141 (177)
129 3sb4_A Hypothetical leucine ri 99.5 5.3E-14 1.8E-18 151.6 12.5 245 547-833 48-311 (329)
130 2je0_A Acidic leucine-rich nuc 99.5 5.1E-14 1.7E-18 132.4 9.2 127 230-360 17-148 (149)
131 3sb4_A Hypothetical leucine ri 99.5 1.6E-13 5.5E-18 147.7 11.4 102 301-408 225-327 (329)
132 2o6r_A Variable lymphocyte rec 99.4 5.8E-13 2E-17 129.2 13.2 113 548-661 28-140 (177)
133 1ds9_A Outer arm dynein; leuci 99.4 1E-14 3.5E-19 144.5 -3.3 82 747-832 93-185 (198)
134 3g39_A Variable lymphocyte rec 99.4 7.4E-13 2.5E-17 127.2 9.9 106 731-836 14-119 (170)
135 1a9n_A U2A', U2A'; complex (nu 99.4 3.9E-13 1.3E-17 130.2 7.9 137 543-685 14-154 (176)
136 4fdw_A Leucine rich hypothetic 99.4 2.3E-11 7.8E-16 133.7 20.4 224 542-832 130-358 (401)
137 2r9u_A Variable lymphocyte rec 99.4 2E-12 6.8E-17 124.6 10.4 105 731-835 17-121 (174)
138 4fdw_A Leucine rich hypothetic 99.4 1.8E-11 6.3E-16 134.4 19.3 227 542-832 152-383 (401)
139 4fs7_A Uncharacterized protein 99.3 2.8E-11 9.6E-16 133.7 19.9 79 574-655 298-376 (394)
140 3g39_A Variable lymphocyte rec 99.3 5.3E-12 1.8E-16 121.2 11.5 105 550-658 11-115 (170)
141 1a9n_A U2A', U2A'; complex (nu 99.3 3.4E-12 1.2E-16 123.6 9.8 82 231-315 43-126 (176)
142 1ds9_A Outer arm dynein; leuci 99.3 3.7E-14 1.3E-18 140.4 -5.0 135 542-684 42-185 (198)
143 2r9u_A Variable lymphocyte rec 99.3 1.2E-11 4E-16 119.2 11.7 104 551-658 15-118 (174)
144 4fs7_A Uncharacterized protein 99.3 1.7E-10 5.7E-15 127.4 21.3 83 592-679 292-374 (394)
145 3un9_A NLR family member X1; l 99.1 5.2E-12 1.8E-16 137.4 1.2 86 230-315 155-252 (372)
146 2ifg_A High affinity nerve gro 99.1 1.1E-10 3.6E-15 126.8 9.7 86 747-833 31-117 (347)
147 3un9_A NLR family member X1; l 99.1 8.9E-12 3E-16 135.6 -0.2 111 205-315 71-196 (372)
148 2ifg_A High affinity nerve gro 99.0 6.8E-10 2.3E-14 120.3 11.6 104 552-659 12-117 (347)
149 4gt6_A Cell surface protein; l 99.0 5.2E-08 1.8E-12 107.3 26.2 133 541-683 258-390 (394)
150 4gt6_A Cell surface protein; l 99.0 3.1E-08 1.1E-12 109.2 22.1 108 543-657 283-390 (394)
151 2ra8_A Uncharacterized protein 98.7 1.1E-08 3.8E-13 110.1 7.2 85 301-387 251-341 (362)
152 2ra8_A Uncharacterized protein 98.7 2E-08 6.8E-13 108.1 6.9 58 250-310 168-227 (362)
153 4h09_A Hypothetical leucine ri 98.6 3.1E-06 1.1E-10 92.5 22.7 108 544-655 236-343 (379)
154 4h09_A Hypothetical leucine ri 98.5 5.8E-06 2E-10 90.4 22.5 147 541-696 210-356 (379)
155 3rw6_A Nuclear RNA export fact 98.5 1.7E-09 5.9E-14 110.1 -7.1 23 86-108 75-97 (267)
156 1io0_A Tropomodulin; LRR prote 98.4 2.7E-07 9.4E-12 89.4 6.1 114 201-314 31-163 (185)
157 3rw6_A Nuclear RNA export fact 98.3 8.9E-07 3.1E-11 90.1 6.7 78 746-825 169-257 (267)
158 1io0_A Tropomodulin; LRR prote 98.2 5.4E-07 1.8E-11 87.3 4.3 93 223-315 29-136 (185)
159 3e4g_A ATP synthase subunit S, 97.8 1.2E-05 4.1E-10 75.6 4.0 83 231-313 62-150 (176)
160 3e4g_A ATP synthase subunit S, 97.6 2.6E-05 8.8E-10 73.3 4.0 59 254-312 61-124 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00058 2E-08 65.4 6.9 111 202-312 37-167 (197)
162 1pgv_A TMD-1, tropomodulin TMD 96.7 0.0017 5.7E-08 62.2 5.5 23 198-220 90-112 (197)
163 3rfe_A Platelet glycoprotein I 96.6 0.0031 1.1E-07 56.3 6.5 58 750-809 11-69 (130)
164 3rfe_A Platelet glycoprotein I 96.3 0.0045 1.5E-07 55.3 5.4 55 730-784 12-68 (130)
165 2lz0_A Uncharacterized protein 37.0 31 0.0011 28.4 3.9 44 610-654 9-52 (100)
166 2lz0_A Uncharacterized protein 36.3 49 0.0017 27.1 5.1 48 583-631 6-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.6e-89 Score=824.95 Aligned_cols=718 Identities=31% Similarity=0.415 Sum_probs=562.0
Q ss_pred CCHHHHHHHHHhhhcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCccccceEecCCCCcEEEEEcCCCccccc-
Q 040113 38 CHDDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKPEEGNIDCCSWDGVECSENTGHVMKLDLSNSCLYGS- 116 (887)
Q Consensus 38 ~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~- 116 (887)
+.++|++||++||+++.++. .+++|+. +.+||+|+||+|+ .++|++|+|+++.+.|.
T Consensus 9 ~~~~~~~all~~k~~~~~~~-----------------~l~~W~~---~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~ 66 (768)
T 3rgz_A 9 SLYREIHQLISFKDVLPDKN-----------------LLPDWSS---NKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGF 66 (768)
T ss_dssp CHHHHHHHHHHHHTTCSCTT-----------------SSTTCCT---TSCGGGSTTEEEE--TTEEEEEECTTSCCCEEH
T ss_pred CCHHHHHHHHHHHhhCCCcc-----------------cccCCCC---CCCCcCCcceEEC--CCcEEEEECCCCCcCCcc
Confidence 35789999999999997432 5889985 6799999999998 58999999999999987
Q ss_pred --ccCCcccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCc--cccCCCCCcEEEccCCCCCCcc
Q 040113 117 --INSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPS--EILELVNLVSLDLSLNSGYGLE 192 (887)
Q Consensus 117 --~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~--~l~~l~~L~~L~l~~n~~~~l~ 192 (887)
+++ .+.++++|++++++.+.+.. +|+.|+++++|++|+|++|.+.|.+|. .++++++|++|++++|.+.
T Consensus 67 ~~l~~--~l~~L~~L~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~--- 139 (768)
T 3rgz_A 67 SAVSS--SLLSLTGLESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--- 139 (768)
T ss_dssp HHHHH--HTTTCTTCCEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEE---
T ss_pred CccCh--hHhccCcccccCCcCCCcCC--CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccC---
Confidence 765 89999999999999998753 678899999999999999999999998 9999999999999999732
Q ss_pred ccCCChHHH-hhcCCCCCEEEccCCCCCCCchhh---hcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCC
Q 040113 193 LQKPNFANL-VEKLSNLETLDLGYVSIRSTIPHN---LANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLG 268 (887)
Q Consensus 193 ~~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~---l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 268 (887)
+.+|.. +.++++|++|++++|.+++..+.. +.++++|++|++++|.+.+..+. ..+++|++|++++|.+.+
T Consensus 140 ---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~ 214 (768)
T 3rgz_A 140 ---FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFST 214 (768)
T ss_dssp ---CCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCS
T ss_pred ---CcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCC
Confidence 223333 378999999999999999988877 88999999999999999876653 889999999999999998
Q ss_pred cchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCcccccc
Q 040113 269 ELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASI 348 (887)
Q Consensus 269 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 348 (887)
.+|. ++++++|++|++++|.+++.+|..++.+++|++|++++|++++.+|.. .+++|++|++++|.+++.+|..+
T Consensus 215 ~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~----~l~~L~~L~L~~n~l~~~ip~~~ 289 (768)
T 3rgz_A 215 GIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL----PLKSLQYLSLAENKFTGEIPDFL 289 (768)
T ss_dssp CCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC----CCTTCCEEECCSSEEEESCCCCS
T ss_pred CCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc----ccCCCCEEECcCCccCCccCHHH
Confidence 8887 999999999999999999999999999999999999999999888743 78999999999999999999988
Q ss_pred CCC-CCccEEEccCCcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCC
Q 040113 349 GNL-RSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQ 427 (887)
Q Consensus 349 ~~l-~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~ 427 (887)
... ++|++|++++|.+++.+|..++.+++|++|++++|.+.+..+.. .+..+++|++|++++|.+..
T Consensus 290 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~-~l~~l~~L~~L~Ls~n~l~~----------- 357 (768)
T 3rgz_A 290 SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD-TLLKMRGLKVLDLSFNEFSG----------- 357 (768)
T ss_dssp CTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHH-HHTTCTTCCEEECCSSEEEE-----------
T ss_pred HhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHH-HHhcCCCCCEEeCcCCccCc-----------
Confidence 775 99999999999999999999999999999999999998777754 37788889999888885431
Q ss_pred CeeEEeeCCCCCcccChhhhcCC-cccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCcccccc
Q 040113 428 KFTVVGLRSCNLIEFPNFLKNQH-HLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLL 506 (887)
Q Consensus 428 ~L~~l~l~~~~l~~~~~~l~~~~-~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~ 506 (887)
.+|..+..++ +|+.|++++|.+++.+|..+....+++|++|++++|.+++..+..+. .
T Consensus 358 -------------~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~---~----- 416 (768)
T 3rgz_A 358 -------------ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS---N----- 416 (768)
T ss_dssp -------------CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG---G-----
T ss_pred -------------cccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHh---c-----
Confidence 3455666665 78888888888887777766554456677777777776654433221 1
Q ss_pred EEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCccc
Q 040113 507 TLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFF 586 (887)
Q Consensus 507 ~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 586 (887)
.++++++++++|++.+.+|..++.+++|++|++++|.+++.+|..+..++ +|++|++++|+++
T Consensus 417 ----------------l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~N~l~ 479 (768)
T 3rgz_A 417 ----------------CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK-TLETLILDFNDLT 479 (768)
T ss_dssp ----------------CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCC
T ss_pred ----------------CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCC-CceEEEecCCccc
Confidence 23444555555555556666667777777777777777777777776666 5777777777777
Q ss_pred ccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcc
Q 040113 587 GTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRI 666 (887)
Q Consensus 587 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 666 (887)
+.+|..+..+++|++|++++|++++.+|..+..+++|++|+|++|++++.+|..++.+++|++|++++|+++|.+|...
T Consensus 480 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~- 558 (768)
T 3rgz_A 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM- 558 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG-
T ss_pred CcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH-
Confidence 7777777777777777777777777777777777777777777777777777777777777777777777776666544
Q ss_pred ccCCCCCCEEEcC---------CCcC-------------cccCChhhhhccccchhcccCCccccccccCCccccccccc
Q 040113 667 DCGFSKLRIIDLS---------NNRF-------------TGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEV 724 (887)
Q Consensus 667 ~~~l~~L~~L~Ls---------~N~l-------------~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 724 (887)
.....+..+++. ++.. .+..|.. +..+..+...+...
T Consensus 559 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~l~~------------------- 617 (768)
T 3rgz_A 559 -FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ-LNRLSTRNPCNITS------------------- 617 (768)
T ss_dssp -GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGG-GGGGGGTCCSCTTS-------------------
T ss_pred -hcccchhhhhccccccccccccccccccccccccccccccccchh-hhcccccccccccc-------------------
Confidence 222222222222 1111 1111111 11111100000000
Q ss_pred cccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCC
Q 040113 725 ATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN 804 (887)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~ 804 (887)
....|.........+.|+.|||++|+++|.+|.+++++++|+.|+|++|+++|.+|..|+++++|++|||++
T Consensus 618 --------~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~ 689 (768)
T 3rgz_A 618 --------RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689 (768)
T ss_dssp --------CEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred --------ceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCC
Confidence 000111111122357799999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCccccCCCCCCeeecccCcccccCCCCCcCccccccccCCCcCCCCCCCCCCCCCCCCCCCCCC
Q 040113 805 NNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFESNSGLCGRPLSRECESDEAPTNEDH 875 (887)
Q Consensus 805 N~l~~~~p~~l~~L~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~n~~lcg~~~~~~c~~~~~~~~~~~ 875 (887)
|+++|.+|..++++++|++||+++|+|+|.||+++||.+|+..+|.||++|||.|+. .|....+...+..
T Consensus 690 N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~~~~~~~ 759 (768)
T 3rgz_A 690 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNADGYAHH 759 (768)
T ss_dssp SCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC-------
T ss_pred CcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCccCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999987 8987666655443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.7e-69 Score=649.47 Aligned_cols=631 Identities=30% Similarity=0.392 Sum_probs=526.2
Q ss_pred cEEEEEcCCCcccccccCCcccccCCCCCeEECCCCCCCCCCCCc--cccCCCCCCEEECCCCCCCccCCccc-cCCCCC
Q 040113 102 HVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPS--EIINLSRLSYLNLSHSSFFGQIPSEI-LELVNL 178 (887)
Q Consensus 102 ~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~--~~~~l~~L~~L~Ls~n~~~~~~p~~l-~~l~~L 178 (887)
+++.++++.+.+ .+....++++++|++|+|++|.+.+. +|. .++++++|++|+|++|.+.+.+|..+ .++++|
T Consensus 78 ~L~~l~~~~~~~---~~l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 153 (768)
T 3rgz_A 78 GLESLFLSNSHI---NGSVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL 153 (768)
T ss_dssp TCCEEECTTSCE---EECCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTC
T ss_pred cccccCCcCCCc---CCCchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCC
Confidence 455666666554 33223899999999999999999875 777 89999999999999999999888776 789999
Q ss_pred cEEEccCCCCCCccccCCChHHH---hhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCC
Q 040113 179 VSLDLSLNSGYGLELQKPNFANL---VEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSK 255 (887)
Q Consensus 179 ~~L~l~~n~~~~l~~~~~~~~~~---~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 255 (887)
++|++++|.+... .+.. +.++++|++|++++|.+.+..+. ..+++|++|++++|.+.+.+|. ++++++
T Consensus 154 ~~L~Ls~n~l~~~------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~ 224 (768)
T 3rgz_A 154 EVLDLSANSISGA------NVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSA 224 (768)
T ss_dssp SEEECCSSCCEEE------THHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCS
T ss_pred CEEECCCCccCCc------CChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCC
Confidence 9999999985332 3444 78999999999999999887764 8899999999999999988887 999999
Q ss_pred CcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccC-CCCccEEE
Q 040113 256 LLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGN-FTQLQSLD 334 (887)
Q Consensus 256 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~-l~~L~~L~ 334 (887)
|++|++++|.+++.+|..++++++|++|++++|.+.+.+|.. .+++|++|++++|++++.+|.. +.. +++|++|+
T Consensus 225 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~--~~~~~~~L~~L~ 300 (768)
T 3rgz_A 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDF--LSGACDTLTGLD 300 (768)
T ss_dssp CCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCC--SCTTCTTCSEEE
T ss_pred CCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHH--HHhhcCcCCEEE
Confidence 999999999999999999999999999999999999887765 8999999999999999999876 655 49999999
Q ss_pred ccCCCCCCccccccCCCCCccEEEccCCcCCccCCcc-ccCCCCCCEEEcCCCCCccccchhhhhcCCC-CCCEEEccCC
Q 040113 335 FTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSS-LRNLTQLITLDLSQNSYRGTMELDFLLVSLK-NLEVLSLSSN 412 (887)
Q Consensus 335 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~-~L~~L~L~~n 412 (887)
+++|.+++.+|..++.+++|++|++++|.+.+.+|.. +..+++|++|++++|.+.+..+.. +..++ +|++|++++|
T Consensus 301 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~~L~~L~Ls~N 378 (768)
T 3rgz_A 301 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES--LTNLSASLLTLDLSSN 378 (768)
T ss_dssp CCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT--HHHHTTTCSEEECCSS
T ss_pred CcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH--HHhhhcCCcEEEccCC
Confidence 9999999999999999999999999999999888876 899999999999999998877766 66666 9999999999
Q ss_pred cccccccccC-CCCCCCeeEEeeCCCCCc-ccChhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccC
Q 040113 413 WLSLLTKVTS-NTTSQKFTVVGLRSCNLI-EFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTG 490 (887)
Q Consensus 413 ~i~~~~~~~~-~~~~~~L~~l~l~~~~l~-~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~ 490 (887)
.+........ ....++|+.+++++|.+. .+|..+..+++|+.|++++|++++.+|..+.. +++|+.|++++|.+++
T Consensus 379 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~--l~~L~~L~L~~n~l~~ 456 (768)
T 3rgz_A 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS--LSKLRDLKLWLNMLEG 456 (768)
T ss_dssp EEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG--CTTCCEEECCSSCCCS
T ss_pred CcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhc--CCCCCEEECCCCcccC
Confidence 6643221111 112567777777777777 67777777777777888777777777777765 6777777777776665
Q ss_pred ccccccccCCccccccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccc
Q 040113 491 FDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGS 570 (887)
Q Consensus 491 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 570 (887)
..+..+. ..++++++++++|++.+.+|..+..+++|++|++++|++++.+|..++.
T Consensus 457 ~~p~~~~------------------------~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 512 (768)
T 3rgz_A 457 EIPQELM------------------------YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512 (768)
T ss_dssp CCCGGGG------------------------GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred cCCHHHc------------------------CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc
Confidence 4433221 1245666666677777778888888999999999999999999999988
Q ss_pred cCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCC-------------------
Q 040113 571 FSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDN------------------- 631 (887)
Q Consensus 571 l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N------------------- 631 (887)
++ +|++|++++|++++.+|..+..+++|++|++++|+++|.+|..+..+..+..+++..+
T Consensus 513 l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (768)
T 3rgz_A 513 LE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 591 (768)
T ss_dssp CT-TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSE
T ss_pred CC-CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccc
Confidence 88 7999999999999999999999999999999999999999988877766665554431
Q ss_pred ---cCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCccc
Q 040113 632 ---QIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKY 708 (887)
Q Consensus 632 ---~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~ 708 (887)
.+.+..+..+..++.++.+++..|.+.|.+|..+ ..+++|+.||+++|+++|.+|.. ++.
T Consensus 592 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~--~~l~~L~~LdLs~N~l~g~ip~~-l~~-------------- 654 (768)
T 3rgz_A 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF--DNNGSMMFLDMSYNMLSGYIPKE-IGS-------------- 654 (768)
T ss_dssp EEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC--SSSBCCCEEECCSSCCBSCCCGG-GGG--------------
T ss_pred cccccccccchhhhccccccccccccceecccCchhh--hccccccEEECcCCcccccCCHH-Hhc--------------
Confidence 2345556666777788888999999999988876 78999999999999999999975 221
Q ss_pred cccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCC
Q 040113 709 LQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIP 788 (887)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p 788 (887)
.+.|+.|+|++|+++|.||..++++++|++|||++|+++|.+|
T Consensus 655 -------------------------------------l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip 697 (768)
T 3rgz_A 655 -------------------------------------MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697 (768)
T ss_dssp -------------------------------------CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC
T ss_pred -------------------------------------cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC
Confidence 4568999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCc-ccc
Q 040113 789 SCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNY-LTG 833 (887)
Q Consensus 789 ~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~-l~g 833 (887)
..++++++|++|||++|+++|.||.. ..+..+....+.+|+ |.|
T Consensus 698 ~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 698 QAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp GGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEES
T ss_pred hHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcC
Confidence 99999999999999999999999975 344556666677775 555
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.1e-57 Score=547.10 Aligned_cols=607 Identities=22% Similarity=0.195 Sum_probs=476.0
Q ss_pred EEcCCCcccccccCCcccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccC
Q 040113 106 LDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSL 185 (887)
Q Consensus 106 L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~ 185 (887)
++.+++.+.. ++. .+. +++++|+|++|.+++. .+..|+++++|++|++++|.+.+..|..++++++|++|++++
T Consensus 9 ~~cs~~~L~~-ip~--~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 9 ADCSHLKLTQ-VPD--DLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp EECCSSCCSS-CCS--CSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred eECCCCCccc-ccc--ccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC
Confidence 4445555542 332 333 6899999999999875 456799999999999999999888888999999999999999
Q ss_pred CCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCC
Q 040113 186 NSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNE 265 (887)
Q Consensus 186 n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 265 (887)
|.+..+. +..++++++|++|++++|.+.+..+..++++++|++|++++|.+.+..+..+.++++|++|++++|.
T Consensus 83 n~l~~l~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 156 (680)
T 1ziw_A 83 NELSQLS------DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156 (680)
T ss_dssp SCCCCCC------TTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC
T ss_pred CccCccC------hhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc
Confidence 9865443 3357889999999999999988888889999999999999999998888889999999999999999
Q ss_pred CCCcchhhcc--CCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhh-ccCCCCccEEEccCCCCCC
Q 040113 266 LLGELPVSIG--NLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIV-IGNFTQLQSLDFTSNKFSG 342 (887)
Q Consensus 266 l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~~~l~~L~~L~L~~n~l~~ 342 (887)
+++..+..+. .+++|++|++++|.+++..|..+..+++|+.|++.++.+.+....... .-..++|+.|++++|.+++
T Consensus 157 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~ 236 (680)
T 1ziw_A 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236 (680)
T ss_dssp CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE
T ss_pred ccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc
Confidence 9887777654 568999999999999988888999999999999999887643221100 0134789999999999998
Q ss_pred ccccccCCCCC--ccEEEccCCcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccc
Q 040113 343 ELHASIGNLRS--LEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKV 420 (887)
Q Consensus 343 ~~~~~l~~l~~--L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~ 420 (887)
..+..+..++. |++|++++|.+.+..+..+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.......
T Consensus 237 ~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~~~~~~~~~- 313 (680)
T 1ziw_A 237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS--LHGLFNVRYLNLKRSFTKQSIS- 313 (680)
T ss_dssp ECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTT--TTTCTTCCEEECTTCBCCC----
T ss_pred cChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhh--hcCCCCccEEeccchhhhcccc-
Confidence 88888887765 999999999999888888999999999999999998877655 7889999999998873221100
Q ss_pred cCCCCCCCeeEEeeCCCCCcccC-hhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccC
Q 040113 421 TSNTTSQKFTVVGLRSCNLIEFP-NFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLP 499 (887)
Q Consensus 421 ~~~~~~~~L~~l~l~~~~l~~~~-~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 499 (887)
...+..+. ..+..+++|++|++++|.+.+..+..+.. +++|++|++++|.+......
T Consensus 314 ---------------~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~Ls~n~~~~~~l~----- 371 (680)
T 1ziw_A 314 ---------------LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG--LINLKYLSLSNSFTSLRTLT----- 371 (680)
T ss_dssp ------------------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTT--CTTCCEEECTTCBSCCCEEC-----
T ss_pred ---------------cccccccChhhcccCCCCCEEECCCCccCCCChhHhcc--ccCCcEEECCCCchhhhhcc-----
Confidence 00011111 14677888999999999988877777765 78888888887764321100
Q ss_pred CccccccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhh--CcCCCCeEEcCCCccCCCCCCcccccCCcceE
Q 040113 500 GGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLC--KLDSLEILVLSHNNLSGLLPRCLGSFSDKLSI 577 (887)
Q Consensus 500 ~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~ 577 (887)
+..+. ..++|+.|++++|++++..|..+..++ +|++
T Consensus 372 -----------------------------------------~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~ 409 (680)
T 1ziw_A 372 -----------------------------------------NETFVSLAHSPLHILNLTKNKISKIESDAFSWLG-HLEV 409 (680)
T ss_dssp -----------------------------------------TTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCT-TCCE
T ss_pred -----------------------------------------hhhhcccccCcCceEECCCCCCCeEChhhhhCCC-CCCE
Confidence 00111 125788888888888877788888777 6888
Q ss_pred EecCCCcccccCC-ccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCC--CCCCccccCCCCCCEEEccC
Q 040113 578 LDLRANNFFGTIP-NTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIR--DIFPSWLGTLPNLTVLILQS 654 (887)
Q Consensus 578 L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~ 654 (887)
|++++|++++.+| ..|..+++|++|++++|++.+..+..|..+++|+.|++++|.+. +..|..|..+++|++|++++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence 8888888877665 57888888888888888888888888888888888888888876 56778888888888888888
Q ss_pred CcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeee
Q 040113 655 NKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMN 734 (887)
Q Consensus 655 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (887)
|++++..+..+ .++++|++|++++|++++..+.. +..-
T Consensus 490 N~l~~i~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~-~~~~--------------------------------------- 527 (680)
T 1ziw_A 490 NNIANINDDML--EGLEKLEILDLQHNNLARLWKHA-NPGG--------------------------------------- 527 (680)
T ss_dssp SCCCCCCTTTT--TTCTTCCEEECCSSCCGGGGSTT-STTS---------------------------------------
T ss_pred CCCCcCChhhh--ccccccCEEeCCCCCccccchhh-ccCC---------------------------------------
Confidence 88887766554 67888899999988887421110 0000
Q ss_pred eccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCcc
Q 040113 735 NKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQ 814 (887)
Q Consensus 735 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~ 814 (887)
......-.+.|+.|+|++|+++...+..|+++++|++|+|++|++++..+..|.++++|+.|+|++|++++..|..
T Consensus 528 ----~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 603 (680)
T 1ziw_A 528 ----PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603 (680)
T ss_dssp ----CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHH
T ss_pred ----cchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhH
Confidence 0000011567999999999999555567999999999999999999888888999999999999999999999888
Q ss_pred cc-CCCCCCeeecccCcccccCCC
Q 040113 815 LV-ELTFLEFFNVSDNYLTGPIPQ 837 (887)
Q Consensus 815 l~-~L~~L~~L~ls~N~l~g~iP~ 837 (887)
+. .+++|+++++++|++.+.-+.
T Consensus 604 ~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 604 FGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp HHHHHTTCSEEECTTCCCCBCCCC
T ss_pred hcccccccCEEEccCCCcccCCcc
Confidence 87 789999999999999987653
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.5e-57 Score=540.91 Aligned_cols=598 Identities=21% Similarity=0.202 Sum_probs=459.4
Q ss_pred CeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCC
Q 040113 130 EWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLE 209 (887)
Q Consensus 130 ~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~ 209 (887)
+.++.++++++. +|..+. +++++|+|++|.+.+..+..+.++++|++|++++|.+..+ .|..++++++|+
T Consensus 7 ~~~~cs~~~L~~--ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~ 76 (680)
T 1ziw_A 7 EVADCSHLKLTQ--VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL------EPELCQKLPMLK 76 (680)
T ss_dssp SEEECCSSCCSS--CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCC------CTTHHHHCTTCC
T ss_pred CeeECCCCCccc--cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCcc------CHHHHhcccCcC
Confidence 568888888874 677665 7999999999999887777899999999999999985443 367788899999
Q ss_pred EEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCC
Q 040113 210 TLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINN 289 (887)
Q Consensus 210 ~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 289 (887)
+|++++|.+++..+..|+++++|++|++++|.+.+..+..|+++++|++|++++|.+.+..|..++++++|++|++++|.
T Consensus 77 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 156 (680)
T 1ziw_A 77 VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC
T ss_pred EEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc
Confidence 99999999887777778999999999999999987777888999999999999999988888888889999999999999
Q ss_pred CCCccchhhh--CCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccC---CCCCccEEEccCCcC
Q 040113 290 LSGELPTSIQ--NLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIG---NLRSLEVLAIGRCNF 364 (887)
Q Consensus 290 l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~L~~n~i 364 (887)
+++..+..++ .+++|++|++++|.+++..+.. ++.+++|+.|++.++.+.+.....+. ..++|+.|++++|.+
T Consensus 157 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l 234 (680)
T 1ziw_A 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGC--FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234 (680)
T ss_dssp CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTG--GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCC
T ss_pred ccccCHHHhhccccccccEEECCCCcccccChhh--hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcc
Confidence 8877776654 4578999999999888777765 77888888888888877543222211 347788888888888
Q ss_pred CccCCccccCCCC--CCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCccc
Q 040113 365 SGRIPSSLRNLTQ--LITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEF 442 (887)
Q Consensus 365 ~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~ 442 (887)
.+..|..+..++. |++|++++|.+.+..+.. +..+++|++|++++|.+... .
T Consensus 235 ~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~------------------------~ 288 (680)
T 1ziw_A 235 STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS--FAWLPQLEYFFLEYNNIQHL------------------------F 288 (680)
T ss_dssp CEECTTTTGGGGGSCCCEEECTTSCCCEECTTT--TTTCTTCCEEECCSCCBSEE------------------------C
T ss_pred cccChhHhhccCcCCCCEEECCCCCcCccCccc--ccCcccccEeeCCCCccCcc------------------------C
Confidence 8877777777654 888888888877665544 56666666666666644322 1
Q ss_pred ChhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCCC
Q 040113 443 PNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVP 522 (887)
Q Consensus 443 ~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~ 522 (887)
|..+..+++|+.|++++|...+.++..- ++. +.. .....
T Consensus 289 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~----lp~-------------i~~------------------------~~~~~ 327 (680)
T 1ziw_A 289 SHSLHGLFNVRYLNLKRSFTKQSISLAS----LPK-------------IDD------------------------FSFQW 327 (680)
T ss_dssp TTTTTTCTTCCEEECTTCBCCC----------CCE-------------ECT------------------------TTTTT
T ss_pred hhhhcCCCCccEEeccchhhhccccccc----ccc-------------cCh------------------------hhccc
Confidence 3345556666666666554332211000 000 000 00001
Q ss_pred CCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCC--CCCcccccC-CcceEEecCCCcccccCCccccCCCcc
Q 040113 523 PSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGL--LPRCLGSFS-DKLSILDLRANNFFGTIPNTFMKESRL 599 (887)
Q Consensus 523 ~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~-~~L~~L~L~~N~l~~~~~~~~~~l~~L 599 (887)
.++++++++++|.+.+..+..|..+++|++|++++|.+... .+..+..+. .+|+.|++++|++++..|..|..+++|
T Consensus 328 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 407 (680)
T 1ziw_A 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL 407 (680)
T ss_dssp CTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCC
Confidence 23344444555555555566788899999999999976432 222333321 269999999999999999999999999
Q ss_pred cEEEccCCeeeeeCC-ccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccc--cCCCCccccCCCCCCEE
Q 040113 600 GMIDLSHNLFQGRIP-RSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYG--IIREPRIDCGFSKLRII 676 (887)
Q Consensus 600 ~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~~~l~~L~~L 676 (887)
+.|++++|.+++.+| ..|.++++|++|++++|++.+..+..|..+++|+.|++++|.+.+ .+|..+ ..+++|+.|
T Consensus 408 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~--~~l~~L~~L 485 (680)
T 1ziw_A 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF--QPLRNLTIL 485 (680)
T ss_dssp CEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT--TTCTTCCEE
T ss_pred CEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc--ccCCCCCEE
Confidence 999999999998776 689999999999999999999999999999999999999999874 445444 789999999
Q ss_pred EcCCCcCcccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeec
Q 040113 677 DLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSS 756 (887)
Q Consensus 677 ~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 756 (887)
++++|++++ +|...|.. .+.|+.|+|++
T Consensus 486 ~Ls~N~l~~-i~~~~~~~---------------------------------------------------l~~L~~L~Ls~ 513 (680)
T 1ziw_A 486 DLSNNNIAN-INDDMLEG---------------------------------------------------LEKLEILDLQH 513 (680)
T ss_dssp ECCSSCCCC-CCTTTTTT---------------------------------------------------CTTCCEEECCS
T ss_pred ECCCCCCCc-CChhhhcc---------------------------------------------------ccccCEEeCCC
Confidence 999999984 44332221 45689999999
Q ss_pred CcCCccCh--------hhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeccc
Q 040113 757 NRFDGMIP--------TSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSD 828 (887)
Q Consensus 757 N~l~~~ip--------~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~ 828 (887)
|++++..+ ..++++++|++|+|++|+++...+..|+++++|+.|||++|++++..+..|..+++|++|++++
T Consensus 514 N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~ 593 (680)
T 1ziw_A 514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 593 (680)
T ss_dssp SCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCC
Confidence 99986532 2378999999999999999965556799999999999999999988888889999999999999
Q ss_pred CcccccCCCCC--cCccccccccCCCcCCCCCCC
Q 040113 829 NYLTGPIPQGR--QFATFDNSSFESNSGLCGRPL 860 (887)
Q Consensus 829 N~l~g~iP~~~--~~~~~~~~~~~~n~~lcg~~~ 860 (887)
|++++..|..- .+..+....+.|||+.|+|+.
T Consensus 594 N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 594 NLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp SCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 99998766431 345566677889999998763
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.2e-52 Score=490.98 Aligned_cols=520 Identities=19% Similarity=0.201 Sum_probs=368.5
Q ss_pred CCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEcc
Q 040113 207 NLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLS 286 (887)
Q Consensus 207 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 286 (887)
++++|++++|.+++..|..|+++++|++|++++|.+.+..|.+|.++++|++|++++|.+.+..|..|+++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 34555555555655556666677777777777777666666667777777777777777766666677777777777777
Q ss_pred CCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCcc--EEEccCCcC
Q 040113 287 INNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLE--VLAIGRCNF 364 (887)
Q Consensus 287 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~L~~n~i 364 (887)
+|.+++..+..++.+++|++|++++|++.+..... +..+++|++|++++|.+++..+..++.+++|+ .|++++|.+
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK--GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT--TCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ccCcccCCcchhccCCcccEEECCCCcccccCccc--ccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 77777655666777777777777777776522222 33467777777777777766666677777777 677777777
Q ss_pred CccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCccc-C
Q 040113 365 SGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEF-P 443 (887)
Q Consensus 365 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~-~ 443 (887)
.+..|..+.. .+|++|++++|... +. .+..+..+....+........... .+ +
T Consensus 192 ~~~~~~~~~~-~~L~~L~l~~~~~~---~~--~~~~l~~~~l~~l~~~~~~~~~~~--------------------~i~~ 245 (606)
T 3t6q_A 192 AGIEPGAFDS-AVFQSLNFGGTQNL---LV--IFKGLKNSTIQSLWLGTFEDMDDE--------------------DISP 245 (606)
T ss_dssp CEECTTTTTT-CEEEEEECTTCSCH---HH--HHHHTTTCEEEEEECCCCTTSCCC--------------------CCCG
T ss_pred CccChhHhhh-ccccccccCCchhH---HH--Hhhhccccchhheechhhcccccc--------------------ccCh
Confidence 7665555443 56777777777521 11 133344433333322211111100 00 0
Q ss_pred hhhhcCC--cccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCC
Q 040113 444 NFLKNQH--HLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPV 521 (887)
Q Consensus 444 ~~l~~~~--~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~ 521 (887)
..+..+. +|+.|++++|.+++..+..+.. +++|++|++++|.++.++... ...+
T Consensus 246 ~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~lp~~l----~~l~------------------ 301 (606)
T 3t6q_A 246 AVFEGLCEMSVESINLQKHYFFNISSNTFHC--FSGLQELDLTATHLSELPSGL----VGLS------------------ 301 (606)
T ss_dssp GGGGGGGGSEEEEEECTTCCCSSCCTTTTTT--CTTCSEEECTTSCCSCCCSSC----CSCT------------------
T ss_pred hHhchhhcCceeEEEeecCccCccCHHHhcc--ccCCCEEeccCCccCCCChhh----cccc------------------
Confidence 1111111 5666666666666555555544 666666666666666444321 1112
Q ss_pred CCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCc-ccccCCcceEEecCCCcccccC--CccccCCCc
Q 040113 522 PPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRC-LGSFSDKLSILDLRANNFFGTI--PNTFMKESR 598 (887)
Q Consensus 522 ~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~--~~~~~~l~~ 598 (887)
+++++++++|.+.+..|..+..+++|++|++++|.+.+.+|.. +..++ +|++|++++|++++.. +..+..+++
T Consensus 302 ---~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~ 377 (606)
T 3t6q_A 302 ---TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE-NLRELDLSHDDIETSDCCNLQLRNLSH 377 (606)
T ss_dssp ---TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT-TCCEEECCSSCCCEEEESTTTTTTCTT
T ss_pred ---cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC-cCCEEECCCCccccccCcchhcccCCC
Confidence 2333333334444445566788899999999999988777654 77777 7999999999998776 778889999
Q ss_pred ccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCc-cccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEE
Q 040113 599 LGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPS-WLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIID 677 (887)
Q Consensus 599 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 677 (887)
|++|++++|++.+..|..|..+++|++|++++|++.+..+. .+..+++|++|++++|++.+..+..+ ..+++|++|+
T Consensus 378 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~ 455 (606)
T 3t6q_A 378 LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF--DGLPALQHLN 455 (606)
T ss_dssp CCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT--TTCTTCCEEE
T ss_pred CCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH--hCCCCCCEEE
Confidence 99999999999988899999999999999999999887654 48899999999999999988877655 6789999999
Q ss_pred cCCCcCccc-CCh-hhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEee
Q 040113 678 LSNNRFTGK-LPS-KSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILS 755 (887)
Q Consensus 678 Ls~N~l~~~-ip~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 755 (887)
+++|++.+. +|. ..+. ..+.|+.|+++
T Consensus 456 L~~n~l~~~~~~~~~~~~---------------------------------------------------~l~~L~~L~Ls 484 (606)
T 3t6q_A 456 LQGNHFPKGNIQKTNSLQ---------------------------------------------------TLGRLEILVLS 484 (606)
T ss_dssp CTTCBCGGGEECSSCGGG---------------------------------------------------GCTTCCEEECT
T ss_pred CCCCCCCccccccchhhc---------------------------------------------------cCCCccEEECC
Confidence 999998752 221 0010 15679999999
Q ss_pred cCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccccC
Q 040113 756 SNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPI 835 (887)
Q Consensus 756 ~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g~i 835 (887)
+|++++.+|..++.+++|++|+|++|++++..|..+.++++| .|+|++|++++.+|..+..+++|+++++++|++.+..
T Consensus 485 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred CCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999999866
Q ss_pred C
Q 040113 836 P 836 (887)
Q Consensus 836 P 836 (887)
+
T Consensus 564 ~ 564 (606)
T 3t6q_A 564 S 564 (606)
T ss_dssp G
T ss_pred C
Confidence 5
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.2e-51 Score=487.77 Aligned_cols=517 Identities=21% Similarity=0.238 Sum_probs=334.6
Q ss_pred CCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCC
Q 040113 128 HLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSN 207 (887)
Q Consensus 128 ~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~ 207 (887)
++++|+|++|.+++. .|..|+++++|++|+|++|.+.+..|..|+++++|++|++++|.
T Consensus 34 ~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-------------------- 92 (606)
T 3t6q_A 34 STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP-------------------- 92 (606)
T ss_dssp TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC--------------------
T ss_pred cCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc--------------------
Confidence 677788887777764 46677777777777777777776667667777777777666665
Q ss_pred CCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccC
Q 040113 208 LETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSI 287 (887)
Q Consensus 208 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 287 (887)
+.+..|..++++++|++|++++|.+++..+..++++++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 93 ----------l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 162 (606)
T 3t6q_A 93 ----------LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN 162 (606)
T ss_dssp ----------CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS
T ss_pred ----------ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEccc
Confidence 3333344444555555555555555544444455555555555555555442222233355555555555
Q ss_pred CCCCCccchhhhCCCCCC--EEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCC
Q 040113 288 NNLSGELPTSIQNLVSLE--ELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFS 365 (887)
Q Consensus 288 n~l~~~~~~~l~~l~~L~--~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~ 365 (887)
|.+++..+..++.+++|+ +|++++|.+.+..|.. + ....|+.|++++|. .++..+..+..++...+....+.
T Consensus 163 n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~--~-~~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~ 236 (606)
T 3t6q_A 163 NAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA--F-DSAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFE 236 (606)
T ss_dssp SCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTT--T-TTCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCT
T ss_pred CcccccChhhhhhhcccceeEEecCCCccCccChhH--h-hhccccccccCCch---hHHHHhhhccccchhheechhhc
Confidence 555544455555555555 5555555555443332 2 22455555555554 12222333333222222111111
Q ss_pred c-----cCCccccCCC--CCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCC
Q 040113 366 G-----RIPSSLRNLT--QLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCN 438 (887)
Q Consensus 366 ~-----~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~ 438 (887)
+ ..+..+..+. +|++|++++|.+.+..+.. +..+++|++|++++|.+
T Consensus 237 ~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l------------------------ 290 (606)
T 3t6q_A 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT--FHCFSGLQELDLTATHL------------------------ 290 (606)
T ss_dssp TSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTT--TTTCTTCSEEECTTSCC------------------------
T ss_pred cccccccChhHhchhhcCceeEEEeecCccCccCHHH--hccccCCCEEeccCCcc------------------------
Confidence 0 0011111111 3444555555444433322 33344444444443322
Q ss_pred CcccChhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccC
Q 040113 439 LIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGP 518 (887)
Q Consensus 439 l~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ 518 (887)
..+|..+..+++|++|++++|.+.+..|..+.. +++|++|++++|.+..
T Consensus 291 -~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~~~~---------------------------- 339 (606)
T 3t6q_A 291 -SELPSGLVGLSTLKKLVLSANKFENLCQISASN--FPSLTHLSIKGNTKRL---------------------------- 339 (606)
T ss_dssp -SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGG--CTTCSEEECCSCSSCC----------------------------
T ss_pred -CCCChhhcccccCCEEECccCCcCcCchhhhhc--cCcCCEEECCCCCccc----------------------------
Confidence 233444455555555555555555544444443 4555444444443331
Q ss_pred CCCCCCCCcEEEccCccccccCC-hhhhCcCCCCeEEcCCCccCCCC--CCcccccCCcceEEecCCCcccccCCccccC
Q 040113 519 LPVPPSRTVNYLVSNNSFIGEIP-SWLCKLDSLEILVLSHNNLSGLL--PRCLGSFSDKLSILDLRANNFFGTIPNTFMK 595 (887)
Q Consensus 519 ~~~~~~~l~~l~l~~n~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~--p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~ 595 (887)
.++ ..+..+++|++|++++|.+++.. |..+..++ +|++|++++|++.+..|..|..
T Consensus 340 --------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~ 398 (606)
T 3t6q_A 340 --------------------ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS-HLQSLNLSYNEPLSLKTEAFKE 398 (606)
T ss_dssp --------------------BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCT-TCCEEECCSCSCEEECTTTTTT
T ss_pred --------------------ccchhhhhccCcCCEEECCCCccccccCcchhcccCC-CCCEEECCCCcCCcCCHHHhcC
Confidence 222 23667888999999999888765 77788887 7999999999999888889999
Q ss_pred CCcccEEEccCCeeeeeCCcc-ccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCccccc-CCCCccccCCCCC
Q 040113 596 ESRLGMIDLSHNLFQGRIPRS-LINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGI-IREPRIDCGFSKL 673 (887)
Q Consensus 596 l~~L~~L~Ls~N~l~~~~~~~-l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~~~l~~L 673 (887)
+++|++|++++|++++..+.. +.++++|++|++++|++.+..|..+..+++|++|++++|++.+. ++.......+++|
T Consensus 399 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L 478 (606)
T 3t6q_A 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL 478 (606)
T ss_dssp CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC
T ss_pred CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCc
Confidence 999999999999999876654 88999999999999999999899999999999999999999873 2333344778999
Q ss_pred CEEEcCCCcCcccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEE
Q 040113 674 RIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSII 753 (887)
Q Consensus 674 ~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 753 (887)
++|++++|++++..|.. +.. .+.|+.|+
T Consensus 479 ~~L~Ls~n~l~~~~~~~-~~~---------------------------------------------------l~~L~~L~ 506 (606)
T 3t6q_A 479 EILVLSFCDLSSIDQHA-FTS---------------------------------------------------LKMMNHVD 506 (606)
T ss_dssp CEEECTTSCCCEECTTT-TTT---------------------------------------------------CTTCCEEE
T ss_pred cEEECCCCccCccChhh-hcc---------------------------------------------------ccCCCEEE
Confidence 99999999998665543 211 46789999
Q ss_pred eecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCC
Q 040113 754 LSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIP 812 (887)
Q Consensus 754 Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p 812 (887)
|++|++++.+|..+.+++.| +|++++|++++..|..++.+++|+.|++++|++.+..+
T Consensus 507 Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 507 LSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99999999999999999999 99999999999999999999999999999999998665
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.4e-51 Score=481.14 Aligned_cols=519 Identities=22% Similarity=0.206 Sum_probs=325.8
Q ss_pred CCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCC
Q 040113 152 SRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSS 231 (887)
Q Consensus 152 ~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~ 231 (887)
++|++|++++|.+.+..+..+.++++|++|++++|.+..+. +..++++++|++|++++|.+.+..|..|+++++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~------~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 105 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE------DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC------TTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccC------HHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence 34444444444443333334444444444444444322111 223344444445555555566666777778888
Q ss_pred CCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCC-cchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCC----E
Q 040113 232 LTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLG-ELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLE----E 306 (887)
Q Consensus 232 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~ 306 (887)
|++|++++|.+.+..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..++.+.+|+ +
T Consensus 106 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~ 185 (606)
T 3vq2_A 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185 (606)
T ss_dssp CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCE
T ss_pred CCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccce
Confidence 8888888888776666777778888888888887765 4677777777777777777777766666665554443 6
Q ss_pred EEccCCcCCCCCCchhhccCCCCccEEEccCCCCC-CccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCC
Q 040113 307 LDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFS-GELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQ 385 (887)
Q Consensus 307 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~ 385 (887)
|++++|.+++..+.. +. ..+|+.|++++|.+. +..|..+..++.|+.+++..+.+.+. ..+..
T Consensus 186 L~l~~n~l~~~~~~~--~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~--------~~l~~----- 249 (606)
T 3vq2_A 186 LDMSLNPIDFIQDQA--FQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE--------RNLEI----- 249 (606)
T ss_dssp EECTTCCCCEECTTT--TT-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS--------CCCSC-----
T ss_pred eeccCCCcceeCccc--cc-CceeeeeeccCCccchhHHHHHhccccccccccccccccccC--------Ccccc-----
Confidence 777777766433322 22 236666666666665 33455556666666655544333211 00000
Q ss_pred CCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEee-CCCCCc-ccChhhhcCCcccEEecccCccc
Q 040113 386 NSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGL-RSCNLI-EFPNFLKNQHHLMLLDLSSNRIH 463 (887)
Q Consensus 386 n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l-~~~~l~-~~~~~l~~~~~L~~L~Ls~n~l~ 463 (887)
+.... +..+.. ..++.+.+ ..+.+. .+|. +..+++|+.|++++|.+.
T Consensus 250 --~~~~~-----~~~l~~-----------------------l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~ 298 (606)
T 3vq2_A 250 --FEPSI-----MEGLCD-----------------------VTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK 298 (606)
T ss_dssp --CCGGG-----GTTGGG-----------------------SEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC
T ss_pred --cChHH-----hhhhhh-----------------------ccHhheeccccccccccccc-cccCCCCCEEEecCccch
Confidence 00000 111000 01222222 112222 1122 444445555555555443
Q ss_pred CCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChh
Q 040113 464 GKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSW 543 (887)
Q Consensus 464 ~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~ 543 (887)
.+| .+.. +++|+.|++++|.+ +.+| .
T Consensus 299 -~l~-~l~~--~~~L~~L~l~~n~l-------------------------------------------------~~lp-~ 324 (606)
T 3vq2_A 299 -YLE-DVPK--HFKWQSLSIIRCQL-------------------------------------------------KQFP-T 324 (606)
T ss_dssp -CCC-CCCT--TCCCSEEEEESCCC-------------------------------------------------SSCC-C
T ss_pred -hhh-hccc--cccCCEEEcccccC-------------------------------------------------cccc-c
Confidence 222 2222 33333333333333 2333 2
Q ss_pred hhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCccccc--CCccccCCCcccEEEccCCeeeeeCCccccCCC
Q 040113 544 LCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGT--IPNTFMKESRLGMIDLSHNLFQGRIPRSLINCS 621 (887)
Q Consensus 544 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 621 (887)
+ .+++|++|++++|...+.+ .+..++ +|++|++++|++++. .+..+..+++|++|++++|.+++ +|..+..++
T Consensus 325 ~-~l~~L~~L~l~~n~~~~~~--~~~~l~-~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~ 399 (606)
T 3vq2_A 325 L-DLPFLKSLTLTMNKGSISF--KKVALP-SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLE 399 (606)
T ss_dssp C-CCSSCCEEEEESCSSCEEC--CCCCCT-TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCT
T ss_pred C-CCCccceeeccCCcCccch--hhccCC-CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCC
Confidence 3 5667777777777544333 445565 678888888877765 36677778888888888888775 456777888
Q ss_pred CCcEEeCCCCcCCCCCC-ccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCccc-CChhhhhccccch
Q 040113 622 KLEFLDIGDNQIRDIFP-SWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGK-LPSKSFLCWNAMK 699 (887)
Q Consensus 622 ~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-ip~~~~~~~~~l~ 699 (887)
+|++|++++|++.+..| ..+..+++|++|++++|++.+..+..+ ..+++|++|++++|++++. +|.. +..
T Consensus 400 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~-~~~----- 471 (606)
T 3vq2_A 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF--LGLTSLNTLKMAGNSFKDNTLSNV-FAN----- 471 (606)
T ss_dssp TCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSC-CTT-----
T ss_pred CCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhh--cCCCCCCEEECCCCcCCCcchHHh-hcc-----
Confidence 88888888888887766 577788888888888888887766655 6778888888888888763 3321 111
Q ss_pred hcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCC
Q 040113 700 IVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLD 779 (887)
Q Consensus 700 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls 779 (887)
.+.|+.|+|++|++++.+|..++.+++|++|+|+
T Consensus 472 ----------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 472 ----------------------------------------------TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505 (606)
T ss_dssp ----------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred ----------------------------------------------CCCCCEEECCCCcCCccChhhhcccccCCEEECC
Confidence 4568899999999998889999999999999999
Q ss_pred CCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCC-CCCeeecccCcccccCCC
Q 040113 780 NNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELT-FLEFFNVSDNYLTGPIPQ 837 (887)
Q Consensus 780 ~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~-~L~~L~ls~N~l~g~iP~ 837 (887)
+|++++.+|..|+++++|++|||++|+++ .+|..+..++ +|++|++++|++.+..|.
T Consensus 506 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp SSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 99999999999999999999999999998 5677788886 699999999999986653
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.6e-52 Score=494.53 Aligned_cols=512 Identities=21% Similarity=0.279 Sum_probs=321.1
Q ss_pred HHHHHHHHHhhhcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCccc---cceEecCCCCcEEEEEcCCCccccc
Q 040113 40 DDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKPEEGNIDCCSW---DGVECSENTGHVMKLDLSNSCLYGS 116 (887)
Q Consensus 40 ~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~l~~~ 116 (887)
..|+.||.+||.++..+. |.+....++...+|.. +.+||.| .||+|+.. ++|++|+|+++.+.|.
T Consensus 29 ~~d~~aL~~~~~~~~~~~--------w~~~~~~~~~~~~W~~---~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~ 96 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKN--------WSQQGFGTQPGANWNF---NKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGR 96 (636)
T ss_dssp HHHHHHHHHHHHHTTGGG--------CCCCC------CCCCC---SSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEE
T ss_pred HHHHHHHHHHHHHcCCCC--------cccCCcCCccCCCCCC---CCCcccccCCCCeEEcCC-CCEEEEEecCcccCCc
Confidence 468999999999986531 3344455667789987 6899999 99999876 8999999999999999
Q ss_pred ccCCcccccCCCCCeEECCCCCCC------C-----CCCCccccCCCCCCEEECCCCCCCccCCccccC-CCCCcEEEcc
Q 040113 117 INSSSSLFKLVHLEWLNLAFNDFK------S-----SEIPSEIINLSRLSYLNLSHSSFFGQIPSEILE-LVNLVSLDLS 184 (887)
Q Consensus 117 ~~~~~~l~~l~~L~~L~L~~n~~~------~-----~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~-l~~L~~L~l~ 184 (887)
+++ +++++++|++|+|++|.+. + ..+|... +..|+ ++++++.+.+.+|..+.. +..+..+++.
T Consensus 97 lp~--~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~ 171 (636)
T 4eco_A 97 VPD--AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQ 171 (636)
T ss_dssp ECG--GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTT
T ss_pred CCh--HHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcc
Confidence 987 9999999999999999762 1 0244433 56677 888888887777766653 2333333333
Q ss_pred CCCCCCccccCCChHHHhhcCCCCCEEEcc--CCCCCCCchhhhcCCCCCCEEEcccCCCCCc-----------------
Q 040113 185 LNSGYGLELQKPNFANLVEKLSNLETLDLG--YVSIRSTIPHNLANLSSLTFLSLHSCGLQGR----------------- 245 (887)
Q Consensus 185 ~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~--~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~----------------- 245 (887)
...+.. .....++.+.+. .|++++ +|..++++++|++|++++|.+++.
T Consensus 172 ~~~~~~------------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 172 QKSIKK------------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp SCCCCC------------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred cccccc------------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 222110 011122222222 456666 677777777777777777777764
Q ss_pred cccccC--CCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCC-CCC-ccchhhhCC------CCCCEEEccCCcCC
Q 040113 246 IQSSLG--NLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINN-LSG-ELPTSIQNL------VSLEELDLSFNKLS 315 (887)
Q Consensus 246 ~~~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~l~ 315 (887)
+|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|. +++ .+|..++.+ ++|++|++++|+++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 777777 78888888888887777777777788888888888887 776 677777665 77888888888877
Q ss_pred CCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCC-CCEEEcCCCCCccccch
Q 040113 316 GEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQ-LITLDLSQNSYRGTMEL 394 (887)
Q Consensus 316 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~ 394 (887)
.+|....++++++|++|++++|.++|.+| .++.+++|++|++++|.++ .+|..+..+++ |++|++++|.++ ..|.
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~ 394 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPN 394 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccch
Confidence 67761127777888888888888877777 7777778888888888777 67777777777 888888888777 3443
Q ss_pred hhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCcccChhhh-------cCCcccEEecccCcccCCCC
Q 040113 395 DFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLK-------NQHHLMLLDLSSNRIHGKIP 467 (887)
Q Consensus 395 ~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~-------~~~~L~~L~Ls~n~l~~~~p 467 (887)
.+....+++|++|++++|.+.... |..+. .+++|+.|++++|+++ .+|
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~------------------------p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp 449 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVD------------------------GKNFDPLDPTPFKGINVSSINLSNNQIS-KFP 449 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTT------------------------TCSSCTTCSSCCCCCCEEEEECCSSCCC-SCC
T ss_pred hhhhcccCccCEEECcCCcCCCcc------------------------hhhhcccccccccCCCCCEEECcCCccC-cCC
Confidence 311222347888888887654332 11122 3345566666666655 233
Q ss_pred ccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCc
Q 040113 468 SWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKL 547 (887)
Q Consensus 468 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l 547 (887)
..++. .+++|++|++++|.++.++...+... +..+.++
T Consensus 450 ~~~~~-~l~~L~~L~Ls~N~l~~i~~~~~~~~-----------------------------------------~~~~~~l 487 (636)
T 4eco_A 450 KELFS-TGSPLSSINLMGNMLTEIPKNSLKDE-----------------------------------------NENFKNT 487 (636)
T ss_dssp THHHH-TTCCCSEEECCSSCCSBCCSSSSEET-----------------------------------------TEECTTG
T ss_pred HHHHc-cCCCCCEEECCCCCCCCcCHHHhccc-----------------------------------------ccccccc
Confidence 32211 14555555555555553332211100 0012233
Q ss_pred CCCCeEEcCCCccCCCCCCccc--ccCCcceEEecCCCcccccCCccccCCCcccEEEcc------CCeeeeeCCccccC
Q 040113 548 DSLEILVLSHNNLSGLLPRCLG--SFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLS------HNLFQGRIPRSLIN 619 (887)
Q Consensus 548 ~~L~~L~Ls~n~l~~~~p~~l~--~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls------~N~l~~~~~~~l~~ 619 (887)
++|++|++++|+++ .+|..+. .++ +|+.|++++|++++ +|..+..+++|+.|+++ +|++.+.+|..+.+
T Consensus 488 ~~L~~L~Ls~N~l~-~lp~~~~~~~l~-~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~ 564 (636)
T 4eco_A 488 YLLTSIDLRFNKLT-KLSDDFRATTLP-YLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564 (636)
T ss_dssp GGCCEEECCSSCCC-BCCGGGSTTTCT-TCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG
T ss_pred CCccEEECcCCcCC-ccChhhhhccCC-CcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhc
Confidence 45666666666665 4555554 444 46666666666655 45555555666666663 44555555555555
Q ss_pred CCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCccc
Q 040113 620 CSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFY 658 (887)
Q Consensus 620 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 658 (887)
+++|++|+|++|++ +.+|..+. ++|++|++++|++.
T Consensus 565 l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 565 CPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred CCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 55555555555555 23343333 45555555555444
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.1e-50 Score=477.22 Aligned_cols=520 Identities=20% Similarity=0.186 Sum_probs=358.7
Q ss_pred CCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEcc
Q 040113 207 NLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLS 286 (887)
Q Consensus 207 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 286 (887)
++++|++++|.+.+..+..|.++++|++|++++|.+++..|.+|.++++|++|++++|.+.+..|..|+++++|++|+++
T Consensus 33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 112 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECT
T ss_pred CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEcc
Confidence 34444444444444444455555555555555555555555555555556666665555555555555556666666666
Q ss_pred CCCCCCccchhhhCCCCCCEEEccCCcCCC-CCCchhhccCCCCccEEEccCCCCCCccccccCCCCCcc----EEEccC
Q 040113 287 INNLSGELPTSIQNLVSLEELDLSFNKLSG-EFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLE----VLAIGR 361 (887)
Q Consensus 287 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~L~~ 361 (887)
+|.+.+..+..++++++|++|++++|.+.+ .+|.. ++++++|++|++++|++++..+..++.+++|+ +|++++
T Consensus 113 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY--FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp TSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG--GGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred CCccccccccccCCCCCCCEEeCCCCcccceechHh--HhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 665555444555556666666666665553 34544 55566666666666666555555454444433 566666
Q ss_pred CcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCcc
Q 040113 362 CNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIE 441 (887)
Q Consensus 362 n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~ 441 (887)
|.+++..+..+... +|++|++++|.+.+..... .+..++.|+.+++..+.+.......... ..
T Consensus 191 n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~l~~~~---------------~~ 253 (606)
T 3vq2_A 191 NPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKT-CLQNLAGLHVHRLILGEFKDERNLEIFE---------------PS 253 (606)
T ss_dssp CCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHH-HHHTTTTCEEEEEEEECCTTSCCCSCCC---------------GG
T ss_pred CCcceeCcccccCc-eeeeeeccCCccchhHHHH-HhccccccccccccccccccCCcccccC---------------hH
Confidence 66664444433333 6666666666665332222 2566666666666544222211110000 01
Q ss_pred cChhhhcCCcccEEec-ccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCC
Q 040113 442 FPNFLKNQHHLMLLDL-SSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLP 520 (887)
Q Consensus 442 ~~~~l~~~~~L~~L~L-s~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~ 520 (887)
.+..+..+ .++.+++ ..+.+.+.+|. +.. +++|+.|++++|.+..+
T Consensus 254 ~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~--l~~L~~L~l~~~~~~~l----------------------------- 300 (606)
T 3vq2_A 254 IMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHC--LANVSAMSLAGVSIKYL----------------------------- 300 (606)
T ss_dssp GGTTGGGS-EEEEEEECCCTTCCGGGGS-CGG--GTTCSEEEEESCCCCCC-----------------------------
T ss_pred Hhhhhhhc-cHhheeccccccccccccc-ccc--CCCCCEEEecCccchhh-----------------------------
Confidence 11222222 4666666 66666666665 333 56666666666554432
Q ss_pred CCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCccc
Q 040113 521 VPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLG 600 (887)
Q Consensus 521 ~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 600 (887)
| .+..+++|++|++++|.+ +.+| .+ .++ +|++|++++|+..+.. .+..+++|+
T Consensus 301 --------------------~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~-~L~~L~l~~n~~~~~~--~~~~l~~L~ 353 (606)
T 3vq2_A 301 --------------------E-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLP-FLKSLTLTMNKGSISF--KKVALPSLS 353 (606)
T ss_dssp --------------------C-CCCTTCCCSEEEEESCCC-SSCC-CC-CCS-SCCEEEEESCSSCEEC--CCCCCTTCC
T ss_pred --------------------h-hccccccCCEEEcccccC-cccc-cC-CCC-ccceeeccCCcCccch--hhccCCCCC
Confidence 2 356688999999999999 6888 44 777 7999999999766554 577899999
Q ss_pred EEEccCCeeeee--CCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEc
Q 040113 601 MIDLSHNLFQGR--IPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDL 678 (887)
Q Consensus 601 ~L~Ls~N~l~~~--~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~L 678 (887)
+|++++|++++. .|..+..+++|++|++++|++++. |..+..+++|++|++++|++.+..+.. .+..+++|+.|++
T Consensus 354 ~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l 431 (606)
T 3vq2_A 354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTEFS-AFLSLEKLLYLDI 431 (606)
T ss_dssp EEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTTTT-TTTTCTTCCEEEC
T ss_pred EEECcCCccCCCcchhhhhccCCcccEeECCCCccccc-hhhccCCCCCCeeECCCCccCCccChh-hhhccccCCEEEC
Confidence 999999999977 488899999999999999999885 588999999999999999999887632 2268899999999
Q ss_pred CCCcCcccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCc
Q 040113 679 SNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNR 758 (887)
Q Consensus 679 s~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~ 758 (887)
++|++.+..|.. +.. .+.|+.|++++|.
T Consensus 432 ~~n~l~~~~~~~-~~~---------------------------------------------------l~~L~~L~l~~n~ 459 (606)
T 3vq2_A 432 SYTNTKIDFDGI-FLG---------------------------------------------------LTSLNTLKMAGNS 459 (606)
T ss_dssp TTSCCEECCTTT-TTT---------------------------------------------------CTTCCEEECTTCE
T ss_pred cCCCCCccchhh-hcC---------------------------------------------------CCCCCEEECCCCc
Confidence 999998766643 111 4678999999999
Q ss_pred CCc-cChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccccCCC
Q 040113 759 FDG-MIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQ 837 (887)
Q Consensus 759 l~~-~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g~iP~ 837 (887)
+++ .+|..++.+++|++|+|++|++++..|..|+++++|++|+|++|++++.+|..++.+++|++|++++|+++ .+|.
T Consensus 460 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~ 538 (606)
T 3vq2_A 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKG 538 (606)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEES
T ss_pred CCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCH
Confidence 998 47889999999999999999999999999999999999999999999999999999999999999999999 5776
Q ss_pred C-CcCc-cccccccCCCcCCCCCCC
Q 040113 838 G-RQFA-TFDNSSFESNSGLCGRPL 860 (887)
Q Consensus 838 ~-~~~~-~~~~~~~~~n~~lcg~~~ 860 (887)
. ..+. .+....+.||+..|++++
T Consensus 539 ~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 539 ILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred hHhhhcccCcEEEccCCCcccCCcc
Confidence 5 1222 244557788998887764
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-49 Score=485.87 Aligned_cols=543 Identities=24% Similarity=0.270 Sum_probs=327.0
Q ss_pred CCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCCh-HHHhhcCCCCCEEEccCCCCCCCchhhhcCCC
Q 040113 152 SRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNF-ANLVEKLSNLETLDLGYVSIRSTIPHNLANLS 230 (887)
Q Consensus 152 ~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~ 230 (887)
++|++|||++|.+.+..|..+.++++|++|++++|... ..+ +..++++++|++|+|++|.+.+..|..|++++
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~------~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~ 97 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP------LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF 97 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC------CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCS
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCc------cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCc
Confidence 45556666666555555555555555555555555310 111 33345555555555555556666666677777
Q ss_pred CCCEEEcccCCCCCccccc--cCCCCCCcEEeCcCCCCCCcch-hhccCCCCCCEEEccCCCCCCccchhhhCC--CCCC
Q 040113 231 SLTFLSLHSCGLQGRIQSS--LGNLSKLLHLDLSLNELLGELP-VSIGNLHSLKKLDLSINNLSGELPTSIQNL--VSLE 305 (887)
Q Consensus 231 ~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~ 305 (887)
+|++|++++|.+.+.++.. +.++++|++|++++|.+.+..+ ..|+++++|++|++++|.+++..+..+..+ ++|+
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~ 177 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSC
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccc
Confidence 7777777777776654443 6667777777777776665433 456666666666666666666666666555 5666
Q ss_pred EEEccCCcCCCCCCchhhccCCCC------ccEEEccCCCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCC
Q 040113 306 ELDLSFNKLSGEFPWSIVIGNFTQ------LQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLI 379 (887)
Q Consensus 306 ~L~L~~n~l~~~~~~~~~~~~l~~------L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~ 379 (887)
.|++++|.+.+..+.. ++.+++ |+.|++++|.+++..+..+... .....++
T Consensus 178 ~L~L~~n~l~~~~~~~--~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~---------------------l~~~~l~ 234 (844)
T 3j0a_A 178 FFSLAANSLYSRVSVD--WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA---------------------ISKSQAF 234 (844)
T ss_dssp CCEECCSBSCCCCCCC--CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGT---------------------SCSCCBS
T ss_pred eEECCCCccccccccc--hhhcCCccccCceeEEecCCCcCchhHHHHHHhh---------------------cCccccc
Confidence 6666666666555433 333322 4444444444443333332211 0112344
Q ss_pred EEEcCCCCC---------ccccchhhhhcC--CCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCcc-cChhhh
Q 040113 380 TLDLSQNSY---------RGTMELDFLLVS--LKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIE-FPNFLK 447 (887)
Q Consensus 380 ~L~L~~n~l---------~~~~~~~~~l~~--l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~-~~~~l~ 447 (887)
.+.++.+.. .+..... +.. .++|+.|++++| .+.. .+..+.
T Consensus 235 ~L~l~~~~~~~~~~~~~l~~~~~~~--f~~l~~~~L~~L~Ls~n-------------------------~l~~~~~~~~~ 287 (844)
T 3j0a_A 235 SLILAHHIMGAGFGFHNIKDPDQNT--FAGLARSSVRHLDLSHG-------------------------FVFSLNSRVFE 287 (844)
T ss_dssp EEECCSSCCBCSSSCSSSTTGGGTT--TTTTTTSCCCEEECTTC-------------------------CCCEECSCCSS
T ss_pred ceecccccccccccccccCCCChhh--hhccccCCccEEECCCC-------------------------cccccChhhhh
Confidence 444432221 1111100 111 122222222222 2221 122334
Q ss_pred cCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCc
Q 040113 448 NQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTV 527 (887)
Q Consensus 448 ~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~ 527 (887)
.+++|+.|++++|++.+..|..+.. +++|++|++++|
T Consensus 288 ~l~~L~~L~L~~n~i~~~~~~~~~~--l~~L~~L~Ls~N----------------------------------------- 324 (844)
T 3j0a_A 288 TLKDLKVLNLAYNKINKIADEAFYG--LDNLQVLNLSYN----------------------------------------- 324 (844)
T ss_dssp SCCCCCEEEEESCCCCEECTTTTTT--CSSCCEEEEESC-----------------------------------------
T ss_pred cCCCCCEEECCCCcCCCCChHHhcC--CCCCCEEECCCC-----------------------------------------
Confidence 4444444444444444444433332 333333333333
Q ss_pred EEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCC
Q 040113 528 NYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHN 607 (887)
Q Consensus 528 ~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 607 (887)
.+.+..|..+..+++|+.|++++|.+.+..+..+..++ +|++|++++|.+++. ..+++|+.|++++|
T Consensus 325 -------~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N 391 (844)
T 3j0a_A 325 -------LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE-KLQTLDLRDNALTTI-----HFIPSIPDIFLSGN 391 (844)
T ss_dssp -------CCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCC-CCCEEEEETCCSCCC-----SSCCSCSEEEEESC
T ss_pred -------CCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCC-CCCEEECCCCCCCcc-----cCCCCcchhccCCC
Confidence 33334455677788899999999988877777788887 799999999888743 23778888999999
Q ss_pred eeeeeCCccccCCCCCcEEeCCCCcCCCCCC-ccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCccc
Q 040113 608 LFQGRIPRSLINCSKLEFLDIGDNQIRDIFP-SWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGK 686 (887)
Q Consensus 608 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 686 (887)
+++ .+|.. ..+++.|++++|++.+... ..+..+++|++|++++|++++..+... ...+++|+.|++++|.+++.
T Consensus 392 ~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~~~~L~~L~Ls~N~l~~~ 466 (844)
T 3j0a_A 392 KLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT-PSENPSLEQLFLGENMLQLA 466 (844)
T ss_dssp CCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS-SCSCTTCCBCEEESCCCSSS
T ss_pred Ccc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccc-cccCCccccccCCCCccccc
Confidence 888 34433 4678888999998887632 235678889999999998887644322 24578888889988888733
Q ss_pred CChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhh
Q 040113 687 LPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTS 766 (887)
Q Consensus 687 ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~ 766 (887)
.+..... ....-.+.|+.|+|++|++++.+|..
T Consensus 467 ~~~~~~~-----------------------------------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~ 499 (844)
T 3j0a_A 467 WETELCW-----------------------------------------------DVFEGLSHLQVLYLNHNYLNSLPPGV 499 (844)
T ss_dssp CCSCCCS-----------------------------------------------SCSSCBCCEECCCCCHHHHTTCCTTS
T ss_pred cccccch-----------------------------------------------hhhcCcccccEEECCCCcccccChhH
Confidence 2211000 00001466888999999999888888
Q ss_pred hhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccccCCCCCcCccccc
Q 040113 767 IANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDN 846 (887)
Q Consensus 767 l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g~iP~~~~~~~~~~ 846 (887)
+..+++|+.|+|++|++++..|..+. ++|+.|||++|++++.+|..+. +|+++++++|++.+..+- ..|..
T Consensus 500 ~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~----~~f~~ 570 (844)
T 3j0a_A 500 FSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECEL----STFIN 570 (844)
T ss_dssp SSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSC----CSHHH
T ss_pred ccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCccccccc----HHHHH
Confidence 88899999999999999887777666 8899999999999988887654 688899999988876552 22322
Q ss_pred cccCCCcCCCCCCCCCCCCCC
Q 040113 847 SSFESNSGLCGRPLSRECESD 867 (887)
Q Consensus 847 ~~~~~n~~lcg~~~~~~c~~~ 867 (887)
....+|..+||.+....|..+
T Consensus 571 ~~~~~~~~~~~~~~~~~C~~p 591 (844)
T 3j0a_A 571 WLNHTNVTIAGPPADIYCVYP 591 (844)
T ss_dssp HHHHTTTTTCCCGGGCCCSSC
T ss_pred HHHhcCcccccccccCccCCc
Confidence 223456667776666667643
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-48 Score=477.16 Aligned_cols=525 Identities=21% Similarity=0.220 Sum_probs=316.5
Q ss_pred ccccceEecCCCCcEEEEEcCCCcccccccCCcccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccC
Q 040113 89 CSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQI 168 (887)
Q Consensus 89 c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~ 168 (887)
|+|..|-+ ...++++|+|++|.+.+..+. .+.++++|++|+|++|.+.+...|..|+++++|++|+|++|.+.+..
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~--~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~ 89 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTAS--SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH 89 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSS--SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChh--HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC
Confidence 45555555 335667777777766655444 66667777777777765443312556667777777777777766666
Q ss_pred CccccCCCCCcEEEccCCCCCCccccCCChHH--HhhcCCCCCEEEccCCCCCCCch-hhhcCCCCCCEEEcccCCCCCc
Q 040113 169 PSEILELVNLVSLDLSLNSGYGLELQKPNFAN--LVEKLSNLETLDLGYVSIRSTIP-HNLANLSSLTFLSLHSCGLQGR 245 (887)
Q Consensus 169 p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~--~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~L~~n~l~~~ 245 (887)
|..++++++|++|++++|.+.. .++. .++++++|++|++++|.+.+..+ ..++++++|++|++++|.+.+.
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLSD------AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCSS------CCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred HhHccCCcccCEeeCcCCCCCc------ccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 6666667777777776665322 1111 25566666666666666655443 3566666666666666666655
Q ss_pred cccccCCC--CCCcEEeCcCCCCCCcchhhccCCCC------CCEEEccCCCCCCccchhhhCC---CCCCEEEccCCcC
Q 040113 246 IQSSLGNL--SKLLHLDLSLNELLGELPVSIGNLHS------LKKLDLSINNLSGELPTSIQNL---VSLEELDLSFNKL 314 (887)
Q Consensus 246 ~~~~l~~l--~~L~~L~Ls~n~l~~~~p~~l~~l~~------L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~n~l 314 (887)
.+..+..+ ++|++|++++|.+.+..|..++.+++ |++|++++|.+.+..+..+... .+++.|.++.+..
T Consensus 164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence 55555554 56666666666666555555444443 6666666666555555444332 3455555542221
Q ss_pred C---------CCCCchhhccCC--CCccEEEccCCCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEc
Q 040113 315 S---------GEFPWSIVIGNF--TQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDL 383 (887)
Q Consensus 315 ~---------~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L 383 (887)
. +..... +.++ ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|++|++
T Consensus 244 ~~~~~~~~l~~~~~~~--f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 321 (844)
T 3j0a_A 244 GAGFGFHNIKDPDQNT--FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321 (844)
T ss_dssp BCSSSCSSSTTGGGTT--TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEE
T ss_pred cccccccccCCCChhh--hhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEEC
Confidence 1 100101 1111 34445555555444444444444444555555555444444444444444444444
Q ss_pred CCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCcccChhhhcCCcccEEecccCccc
Q 040113 384 SQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIH 463 (887)
Q Consensus 384 ~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~Ls~n~l~ 463 (887)
++|.+.+..+.. +..+++|+.|++++|.+...+ +..+..+++|+.|++++|.++
T Consensus 322 s~N~l~~~~~~~--~~~l~~L~~L~L~~N~i~~~~------------------------~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 322 SYNLLGELYSSN--FYGLPKVAYIDLQKNHIAIIQ------------------------DQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp ESCCCSCCCSCS--CSSCTTCCEEECCSCCCCCCC------------------------SSCSCSCCCCCEEEEETCCSC
T ss_pred CCCCCCccCHHH--hcCCCCCCEEECCCCCCCccC------------------------hhhhcCCCCCCEEECCCCCCC
Confidence 444444333322 334444444444444322211 123444555555555555554
Q ss_pred CCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCcEEEccCcccccc-CCh
Q 040113 464 GKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGE-IPS 542 (887)
Q Consensus 464 ~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~-~~~ 542 (887)
+... +++|+.|++++|+++.+ |.....+..+++++|++.+. .+.
T Consensus 376 ~i~~-------~~~L~~L~l~~N~l~~l----------------------------~~~~~~l~~L~ls~N~l~~l~~~~ 420 (844)
T 3j0a_A 376 TIHF-------IPSIPDIFLSGNKLVTL----------------------------PKINLTANLIHLSENRLENLDILY 420 (844)
T ss_dssp CCSS-------CCSCSEEEEESCCCCCC----------------------------CCCCTTCCEEECCSCCCCSSTTHH
T ss_pred cccC-------CCCcchhccCCCCcccc----------------------------cccccccceeecccCccccCchhh
Confidence 2111 34455555555555433 22234455555555555543 223
Q ss_pred hhhCcCCCCeEEcCCCccCCCCCC-cccccCCcceEEecCCCccc-----ccCCccccCCCcccEEEccCCeeeeeCCcc
Q 040113 543 WLCKLDSLEILVLSHNNLSGLLPR-CLGSFSDKLSILDLRANNFF-----GTIPNTFMKESRLGMIDLSHNLFQGRIPRS 616 (887)
Q Consensus 543 ~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 616 (887)
.+..+++|+.|++++|++++..+. .+..++ +|+.|++++|.++ +..+..|..+++|+.|+|++|++++..|..
T Consensus 421 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 499 (844)
T 3j0a_A 421 FLLRVPHLQILILNQNRFSSCSGDQTPSENP-SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV 499 (844)
T ss_dssp HHTTCTTCCEEEEESCCCCCCCSSSSSCSCT-TCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTS
T ss_pred hhhcCCccceeeCCCCcccccccccccccCC-ccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhH
Confidence 456889999999999999866544 234444 7999999999987 444567888999999999999999998889
Q ss_pred ccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhc
Q 040113 617 LINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLC 694 (887)
Q Consensus 617 l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~ 694 (887)
|.++++|+.|+|++|++++..+..+. ++|+.|++++|++++..+..+ .+|+.+++++|++.+.++...|..
T Consensus 500 ~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~-----~~L~~l~l~~Np~~C~c~~~~f~~ 570 (844)
T 3j0a_A 500 FSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF-----VSLSVLDITHNKFICECELSTFIN 570 (844)
T ss_dssp SSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC-----SSCCEEEEEEECCCCSSSCCSHHH
T ss_pred ccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh-----CCcCEEEecCCCcccccccHHHHH
Confidence 99999999999999999998777766 899999999999998877653 589999999999998777554443
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.6e-48 Score=466.51 Aligned_cols=510 Identities=22% Similarity=0.283 Sum_probs=279.9
Q ss_pred CCHHHHHHHHHhhhcCCCCCCcccccccCCCCCCCCCCCCCCCCCC----CCCCCccc------------cceEecCCCC
Q 040113 38 CHDDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKPEE----GNIDCCSW------------DGVECSENTG 101 (887)
Q Consensus 38 ~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~----~~~~~c~w------------~gv~c~~~~~ 101 (887)
+..+|++||++||+++.++ +|+... ...++|+| .||+|+. .+
T Consensus 266 ~~~~d~~ALl~~k~~l~~~---------------------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~ 323 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALDGK---------------------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NG 323 (876)
T ss_dssp HHHHHHHHHHHHHHHTTGG---------------------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TS
T ss_pred cchHHHHHHHHHHHHcCCC---------------------CCCcCCCcccccCCccccccccccccccCcCceEecC-CC
Confidence 3467999999999998542 454320 02233899 9999987 48
Q ss_pred cEEEEEcCCCcccccccCCcccccCCCCCeEEC-CCCCCCCCCCCccccCC----C-----CCCE------EEC-CCCCC
Q 040113 102 HVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNL-AFNDFKSSEIPSEIINL----S-----RLSY------LNL-SHSSF 164 (887)
Q Consensus 102 ~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L-~~n~~~~~~lp~~~~~l----~-----~L~~------L~L-s~n~~ 164 (887)
+|+.|+|+++.+.|.+++ +++++++|++|+| ++|.+.+. .|-..... . .++. ++. ....+
T Consensus 324 ~V~~L~Ls~~~L~G~ip~--~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~ 400 (876)
T 4ecn_A 324 RVTGLSLAGFGAKGRVPD--AIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400 (876)
T ss_dssp CEEEEECTTTCCEEEECG--GGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred CEEEEECccCCCCCcCch--HHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhh
Confidence 999999999999999987 9999999999999 88876554 22110000 0 0000 000 00000
Q ss_pred CccC-----------CccccCCCCCcEEEccC--CCCCCccccCCChHHHhhcCCCCCEEEccCCCCCC-----------
Q 040113 165 FGQI-----------PSEILELVNLVSLDLSL--NSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRS----------- 220 (887)
Q Consensus 165 ~~~~-----------p~~l~~l~~L~~L~l~~--n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~----------- 220 (887)
.+.+ +........++.+.+.. |. + ..+|..++++++|++|+|++|.+++
T Consensus 401 s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~---L----~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s 473 (876)
T 4ecn_A 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR---I----TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDAN 473 (876)
T ss_dssp CHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCE---E----EEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTT
T ss_pred hHHHHHHhhhCccccccccccccchhhceeccccCc---c----cchhHHHhcCCCCCEEECcCCcCCCCcccccccccc
Confidence 0000 00001111122222211 21 1 1145556666666666666666665
Q ss_pred ------Cchhhhc--CCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCC-CCC-cchhhccCCC-------CCCEE
Q 040113 221 ------TIPHNLA--NLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNE-LLG-ELPVSIGNLH-------SLKKL 283 (887)
Q Consensus 221 ------~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~-~~p~~l~~l~-------~L~~L 283 (887)
.+|..++ ++++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..+++++ +|++|
T Consensus 474 ~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L 553 (876)
T 4ecn_A 474 SDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553 (876)
T ss_dssp SHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEE
T ss_pred cccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEE
Confidence 3666655 67777777777777666677667777777777777776 665 5665554443 66677
Q ss_pred EccCCCCCCccch--hhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCC-ccEEEcc
Q 040113 284 DLSINNLSGELPT--SIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRS-LEVLAIG 360 (887)
Q Consensus 284 ~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~ 360 (887)
++++|.++ .+|. .++++++|++|++++|+++ .+| . ++.+++|+.|++++|.++ .+|..+..+++ |++|+++
T Consensus 554 ~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~--~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls 627 (876)
T 4ecn_A 554 YMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-A--FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFS 627 (876)
T ss_dssp ECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C--CCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECC
T ss_pred EeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-h--hcCCCcceEEECcCCccc-cchHHHhhccccCCEEECc
Confidence 77766666 5565 6666666666666666666 555 3 666666666666666666 56666666666 6666666
Q ss_pred CCcCCccCCccccCCCC--CCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCC
Q 040113 361 RCNFSGRIPSSLRNLTQ--LITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCN 438 (887)
Q Consensus 361 ~n~i~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~ 438 (887)
+|.+. .+|..+..++. |+.|++++|.+.+..+.. . ........++|+.|++++|.
T Consensus 628 ~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l---~-------------------~~l~~~~~~~L~~L~Ls~N~ 684 (876)
T 4ecn_A 628 HNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI---S-------------------CSMDDYKGINASTVTLSYNE 684 (876)
T ss_dssp SSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSC---S-------------------SCTTTCCCCCEEEEECCSSC
T ss_pred CCCCC-cCchhhhccccCCCCEEECcCCcCCCccccc---h-------------------hhhccccCCCcCEEEccCCc
Confidence 66666 55555554433 666666666665433210 0 00000012244444444444
Q ss_pred CcccChhhh-cCCcccEEecccCcccCCCCccccccC------CCCCcEEEccCCcccCccccccccCCccccccEEeCC
Q 040113 439 LIEFPNFLK-NQHHLMLLDLSSNRIHGKIPSWLLDPS------TQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLS 511 (887)
Q Consensus 439 l~~~~~~l~-~~~~L~~L~Ls~n~l~~~~p~~~~~~~------~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls 511 (887)
+..+|..+. .+++|+.|++++|+++ .+|...+... +++|+.|+|++|+++
T Consensus 685 L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~---------------------- 741 (876)
T 4ecn_A 685 IQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT---------------------- 741 (876)
T ss_dssp CCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC----------------------
T ss_pred CCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc----------------------
Confidence 445554433 4555666666666555 3343322100 002222222222221
Q ss_pred CcccccCCCCCCCCCcEEEccCccccccCChhhh--CcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccC
Q 040113 512 SNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLC--KLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTI 589 (887)
Q Consensus 512 ~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~ 589 (887)
.+|..+. .+++|+.|+|++|.+++ +|..+..++ +|+.|+|++|+
T Consensus 742 ---------------------------~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~-~L~~L~Ls~N~----- 787 (876)
T 4ecn_A 742 ---------------------------SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSS-QLKAFGIRHQR----- 787 (876)
T ss_dssp ---------------------------CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCT-TCCEEECCCCB-----
T ss_pred ---------------------------cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCC-CCCEEECCCCC-----
Confidence 2333333 45556666666665554 455555555 45555555432
Q ss_pred CccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccC
Q 040113 590 PNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCG 669 (887)
Q Consensus 590 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 669 (887)
++++|++.+.+|..+.++++|+.|+|++|++ +.+|..+. ++|+.|+|++|++....+..+ +.
T Consensus 788 -------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~--~~ 849 (876)
T 4ecn_A 788 -------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSV--CP 849 (876)
T ss_dssp -------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGG--HH
T ss_pred -------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHc--cc
Confidence 2233666666666666666666666666666 44455443 466666666666655443332 22
Q ss_pred CCCCCEEEcCCCcC
Q 040113 670 FSKLRIIDLSNNRF 683 (887)
Q Consensus 670 l~~L~~L~Ls~N~l 683 (887)
...+..+.+.+|+.
T Consensus 850 ~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 850 YIEAGMYVLLYDKT 863 (876)
T ss_dssp HHHTTCCEEECCTT
T ss_pred cccchheeecCCCc
Confidence 22333444444443
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-46 Score=441.31 Aligned_cols=499 Identities=20% Similarity=0.230 Sum_probs=289.9
Q ss_pred CCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccC
Q 040113 208 LETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSI 287 (887)
Q Consensus 208 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 287 (887)
+++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|+++++|++|++++
T Consensus 30 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 109 (570)
T 2z63_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109 (570)
T ss_dssp CCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccc
Confidence 34444444444444444455555555555555555544444455555555555555555444444555555555555555
Q ss_pred CCCCCccchhhhCCCCCCEEEccCCcCCC-CCCchhhccCCCCccEEEccCCCCCCccccccCCCCCc----cEEEccCC
Q 040113 288 NNLSGELPTSIQNLVSLEELDLSFNKLSG-EFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSL----EVLAIGRC 362 (887)
Q Consensus 288 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L----~~L~L~~n 362 (887)
|.+++..+..++++++|++|++++|.+.+ .+|.. ++++++|++|++++|.+++..+..++.+++| +.|++++|
T Consensus 110 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY--FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp SCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG--GGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccCCCccccccccccEEecCCCccceecChhh--hcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 55554333345555555555555555543 23443 5555555555555555554444445544444 55566666
Q ss_pred cCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCccc
Q 040113 363 NFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEF 442 (887)
Q Consensus 363 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~ 442 (887)
.+.+..+..+... +|++|++++|..... .....+..++.++.+.+......... .++ .+....+
T Consensus 188 ~l~~~~~~~~~~~-~L~~L~l~~n~~~~~-~~~~~~~~l~~l~~~~l~~~~~~~~~---------~l~--~~~~~~~--- 251 (570)
T 2z63_A 188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLN-VMKTCIQGLAGLEVHRLVLGEFRNEG---------NLE--KFDKSAL--- 251 (570)
T ss_dssp CCCEECTTTTTTC-EEEEEEEESCCSCTT-HHHHHHHTTTTCEEEEEEEEECCCCS---------SCE--ECCTTTT---
T ss_pred CceecCHHHhccC-cceeEeccccccccc-chhhhhcCccccceeeeccccccCch---------hhh--hcchhhh---
Confidence 5555555444443 566666665533221 11223555555555544332111110 000 0000000
Q ss_pred ChhhhcCCcccEEecccC-cccCCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCC
Q 040113 443 PNFLKNQHHLMLLDLSSN-RIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPV 521 (887)
Q Consensus 443 ~~~l~~~~~L~~L~Ls~n-~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~ 521 (887)
..+..+ .++.++++++ .+.+..|..+.. +++|+.|++++|.++.++
T Consensus 252 -~~l~~l-~l~~l~l~~~~~~~~~~~~~~~~--l~~L~~L~l~~~~l~~l~----------------------------- 298 (570)
T 2z63_A 252 -EGLCNL-TIEEFRLAYLDYYLDDIIDLFNC--LTNVSSFSLVSVTIERVK----------------------------- 298 (570)
T ss_dssp -GGGGGS-EEEEEEEEETTEEESCSTTTTGG--GTTCSEEEEESCEECSCC-----------------------------
T ss_pred -cccccc-chhhhhhhcchhhhhhchhhhcC--cCcccEEEecCccchhhh-----------------------------
Confidence 111111 3556666666 555666666554 566666666666554332
Q ss_pred CCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccE
Q 040113 522 PPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGM 601 (887)
Q Consensus 522 ~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 601 (887)
..+..+ +|++|++++|.+. .+|. ..++ +|+.|++++|.+.+..+. ..+++|++
T Consensus 299 --------------------~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~-~L~~L~l~~n~~~~~~~~--~~~~~L~~ 351 (570)
T 2z63_A 299 --------------------DFSYNF-GWQHLELVNCKFG-QFPT--LKLK-SLKRLTFTSNKGGNAFSE--VDLPSLEF 351 (570)
T ss_dssp --------------------BCCSCC-CCSEEEEESCBCS-SCCB--CBCS-SCCEEEEESCBSCCBCCC--CBCTTCCE
T ss_pred --------------------hhhccC-CccEEeeccCccc-ccCc--cccc-ccCEEeCcCCcccccccc--ccCCCCCE
Confidence 223333 5555555555554 3333 2333 455666666555544433 45556666
Q ss_pred EEccCCeeeeeC--CccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcC
Q 040113 602 IDLSHNLFQGRI--PRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLS 679 (887)
Q Consensus 602 L~Ls~N~l~~~~--~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls 679 (887)
|++++|++++.. +..+.++++|++|++++|++.+..+. +..+++|++|++++|++.+..+.. .+..+++|++|+++
T Consensus 352 L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~ 429 (570)
T 2z63_A 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFS-VFLSLRNLIYLDIS 429 (570)
T ss_dssp EECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSC-TTTTCTTCCEEECT
T ss_pred EeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchh-hhhcCCCCCEEeCc
Confidence 666666665443 45566666666666666666665443 666667777777777666654422 12556777777777
Q ss_pred CCcCcccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcC
Q 040113 680 NNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRF 759 (887)
Q Consensus 680 ~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l 759 (887)
+|++.+..|.. +.. .+.|+.|++++|.+
T Consensus 430 ~n~l~~~~~~~-~~~---------------------------------------------------l~~L~~L~l~~n~l 457 (570)
T 2z63_A 430 HTHTRVAFNGI-FNG---------------------------------------------------LSSLEVLKMAGNSF 457 (570)
T ss_dssp TSCCEECCTTT-TTT---------------------------------------------------CTTCCEEECTTCEE
T ss_pred CCcccccchhh-hhc---------------------------------------------------CCcCcEEECcCCcC
Confidence 77776554432 111 35678888888888
Q ss_pred C-ccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccccCCCC
Q 040113 760 D-GMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQG 838 (887)
Q Consensus 760 ~-~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g~iP~~ 838 (887)
+ +.+|..++.+++|++|+|++|++++..|..|+++++|++|+|++|++++.+|..+..+++|++|++++|+++|.+|..
T Consensus 458 ~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred ccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 7 578888999999999999999999999999999999999999999999998888999999999999999999998865
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-45 Score=433.43 Aligned_cols=496 Identities=24% Similarity=0.274 Sum_probs=337.5
Q ss_pred CCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCC
Q 040113 153 RLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSL 232 (887)
Q Consensus 153 ~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 232 (887)
++++|++++|.+.+..+..+.++++|++|++++|.+..+. +..++++++|++|++++|.+.+..+..|+++++|
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE------DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEEC------TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccC------cccccCchhCCEEeCcCCcCCccCHhhhcCcccc
Confidence 3444455444444444444444444444444444422221 2234455555555555555666666778888888
Q ss_pred CEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCC-cchhhccCCCCCCEEEccCCCCCCccchhhhCCCCC----CEE
Q 040113 233 TFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLG-ELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSL----EEL 307 (887)
Q Consensus 233 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L----~~L 307 (887)
++|++++|.+.+..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..++.+++| ++|
T Consensus 103 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L 182 (570)
T 2z63_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182 (570)
T ss_dssp CEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEE
T ss_pred ccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhc
Confidence 888888888886666568888888888888888876 467888888888888888888887777777777777 788
Q ss_pred EccCCcCCCCCCchhhccCCCCccEEEccCCCCC-CccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCC
Q 040113 308 DLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFS-GELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQN 386 (887)
Q Consensus 308 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n 386 (887)
++++|.+.+..+.. +... +|+.|++++|... ..++..+..++.++.+.+....+.. ...++. +...
T Consensus 183 ~l~~n~l~~~~~~~--~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~--------~~~l~~--~~~~ 249 (570)
T 2z63_A 183 DLSLNPMNFIQPGA--FKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN--------EGNLEK--FDKS 249 (570)
T ss_dssp ECTTCCCCEECTTT--TTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC--------CSSCEE--CCTT
T ss_pred ccCCCCceecCHHH--hccC-cceeEecccccccccchhhhhcCccccceeeeccccccC--------chhhhh--cchh
Confidence 88888877655543 4433 6777777777433 2344455556666555543322211 111111 1111
Q ss_pred CCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCC-CCc-ccChhhhcCCcccEEecccCcccC
Q 040113 387 SYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSC-NLI-EFPNFLKNQHHLMLLDLSSNRIHG 464 (887)
Q Consensus 387 ~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~-~l~-~~~~~l~~~~~L~~L~Ls~n~l~~ 464 (887)
. +..++++ .++.+++..+ .+. .++..+..+++|+.|++++|.+.
T Consensus 250 ~----------~~~l~~l-----------------------~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~- 295 (570)
T 2z63_A 250 A----------LEGLCNL-----------------------TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE- 295 (570)
T ss_dssp T----------TGGGGGS-----------------------EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-
T ss_pred h----------hcccccc-----------------------chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-
Confidence 1 1111111 1233333333 222 45677888899999999999987
Q ss_pred CCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhh
Q 040113 465 KIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWL 544 (887)
Q Consensus 465 ~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~ 544 (887)
.+|.++.. + +|++|++++|.+..++.
T Consensus 296 ~l~~~~~~--~-~L~~L~l~~n~~~~l~~--------------------------------------------------- 321 (570)
T 2z63_A 296 RVKDFSYN--F-GWQHLELVNCKFGQFPT--------------------------------------------------- 321 (570)
T ss_dssp SCCBCCSC--C-CCSEEEEESCBCSSCCB---------------------------------------------------
T ss_pred hhhhhhcc--C-CccEEeeccCcccccCc---------------------------------------------------
Confidence 57777765 5 78888887777664332
Q ss_pred hCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccC--CccccCCCcccEEEccCCeeeeeCCccccCCCC
Q 040113 545 CKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTI--PNTFMKESRLGMIDLSHNLFQGRIPRSLINCSK 622 (887)
Q Consensus 545 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 622 (887)
..+++|+.|++++|.+.+..+. ..++ +|++|++++|++++.. +..+..+++|++|++++|.+.+..+. +..+++
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~--~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~ 397 (570)
T 2z63_A 322 LKLKSLKRLTFTSNKGGNAFSE--VDLP-SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQ 397 (570)
T ss_dssp CBCSSCCEEEEESCBSCCBCCC--CBCT-TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTT
T ss_pred ccccccCEEeCcCCcccccccc--ccCC-CCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCC
Confidence 1345667777777766655554 4455 6777777777776554 56677778888888888888765554 778888
Q ss_pred CcEEeCCCCcCCCCCC-ccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCc-ccCChhhhhccccchh
Q 040113 623 LEFLDIGDNQIRDIFP-SWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFT-GKLPSKSFLCWNAMKI 700 (887)
Q Consensus 623 L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~ip~~~~~~~~~l~~ 700 (887)
|++|++++|++.+..+ ..+..+++|++|++++|++.+..+..+ ..+++|++|++++|+++ +.+|.. +.
T Consensus 398 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~p~~-~~------- 467 (570)
T 2z63_A 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDI-FT------- 467 (570)
T ss_dssp CCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSC-CT-------
T ss_pred CCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhh--hcCCcCcEEECcCCcCccccchhh-hh-------
Confidence 8888888888877655 467788888888888888887766655 67788888888888876 455532 11
Q ss_pred cccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCC
Q 040113 701 VNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDN 780 (887)
Q Consensus 701 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~ 780 (887)
..+.|+.|++++|++++..|..++++++|++|++++
T Consensus 468 --------------------------------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 468 --------------------------------------------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp --------------------------------------------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred --------------------------------------------cccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence 146789999999999999899999999999999999
Q ss_pred CcccccCCccccCCCCCCEEeCCCCcccccCCc
Q 040113 781 NNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQ 813 (887)
Q Consensus 781 N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~ 813 (887)
|++++..|..|+++++|+.|++++|++++..|.
T Consensus 504 n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 999999899999999999999999999998774
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.8e-45 Score=428.08 Aligned_cols=503 Identities=19% Similarity=0.210 Sum_probs=316.9
Q ss_pred CccccceEecCCCCcEEEEEcCCCcccccccCCcccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCcc
Q 040113 88 CCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQ 167 (887)
Q Consensus 88 ~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~ 167 (887)
.|.|.|+ |+.. ++.++ .++. .+. ++|++|+|++|++++. .|..|+++++|++|++++|.+.+.
T Consensus 3 ~C~~~~~-c~~~----------~~~l~-~ip~--~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~ 65 (549)
T 2z81_A 3 SCDASGV-CDGR----------SRSFT-SIPS--GLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTI 65 (549)
T ss_dssp EECTTSE-EECT----------TSCCS-SCCS--CCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEE
T ss_pred cCCCCce-EECC----------CCccc-cccc--cCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCcc
Confidence 4899998 8643 33443 3333 332 6899999999998875 577889999999999999999888
Q ss_pred CCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCC-CchhhhcCCCCCCEEEcccCCCCCcc
Q 040113 168 IPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRS-TIPHNLANLSSLTFLSLHSCGLQGRI 246 (887)
Q Consensus 168 ~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~ 246 (887)
.|..++++++|++|++++|.+..+. +..++.+++|++|++++|.+.+ ..|..++++++|++|++++|.+.+.+
T Consensus 66 ~~~~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 139 (549)
T 2z81_A 66 EGDAFYSLGSLEHLDLSDNHLSSLS------SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI 139 (549)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCSCC------HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred ChhhccccccCCEEECCCCccCccC------HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcccccc
Confidence 8888889999999999988854432 5567888888888888888776 34567778888888888888744344
Q ss_pred c-cccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCC-chhhc
Q 040113 247 Q-SSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFP-WSIVI 324 (887)
Q Consensus 247 ~-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~ 324 (887)
+ ..+.++++|++|++++|.+.+..|..++.+++|++|++++|.+.......+..+++|++|++++|++++... .....
T Consensus 140 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 219 (549)
T 2z81_A 140 RRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVD 219 (549)
T ss_dssp CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSC
T ss_pred CHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchh
Confidence 3 567778888888888888877777777778888888888777763322333567777777777777765310 00012
Q ss_pred cCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCC
Q 040113 325 GNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNL 404 (887)
Q Consensus 325 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L 404 (887)
..+++|+.|++++|.+++..+..+ +..+..+++|+.+++++|.+.+..... . .
T Consensus 220 ~~~~~L~~L~l~~n~l~~~~~~~l--------------------~~~~~~~~~L~~l~l~~~~~~~~~~~~----~---~ 272 (549)
T 2z81_A 220 EVSSPMKKLAFRGSVLTDESFNEL--------------------LKLLRYILELSEVEFDDCTLNGLGDFN----P---S 272 (549)
T ss_dssp CCCCCCCEEEEESCEEEHHHHHHH--------------------HGGGGGCTTCCEEEEESCEEECCSCCC----C---C
T ss_pred hhhhcccceeccccccchhHHHHH--------------------HHHhhhhcccccccccccccccccccc----c---c
Confidence 335556666666665544332211 122334455555555555443321100 0 0
Q ss_pred CEEEccCCcccccccccCCCCCCCeeEEeeCCCCCcccChhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEcc
Q 040113 405 EVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLS 484 (887)
Q Consensus 405 ~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls 484 (887)
....+..+++|+.+++.++.+... ... .
T Consensus 273 -------------------------------------~~~~~~~l~~L~~L~l~~~~i~~~----~~~---~-------- 300 (549)
T 2z81_A 273 -------------------------------------ESDVVSELGKVETVTIRRLHIPQF----YLF---Y-------- 300 (549)
T ss_dssp -------------------------------------TTTCCCCCTTCCEEEEESCBCSCG----GGS---C--------
T ss_pred -------------------------------------chhhhhhhcccccccccccccchh----hhc---c--------
Confidence 000012223344444444332210 000 0
Q ss_pred CCcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCC
Q 040113 485 HNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLL 564 (887)
Q Consensus 485 ~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 564 (887)
.++..+....+|+.|++++|.+. .+
T Consensus 301 ------------------------------------------------------~l~~~~~~~~~L~~L~l~~n~l~-~i 325 (549)
T 2z81_A 301 ------------------------------------------------------DLSTVYSLLEKVKRITVENSKVF-LV 325 (549)
T ss_dssp ------------------------------------------------------CCCHHHHHSTTCCEEEEESSCCC-CC
T ss_pred ------------------------------------------------------cchhhhhhcccceEEEeccCccc-cC
Confidence 00011122334444444444443 33
Q ss_pred CCcc-cccCCcceEEecCCCcccccCC---ccccCCCcccEEEccCCeeeeeCC--ccccCCCCCcEEeCCCCcCCCCCC
Q 040113 565 PRCL-GSFSDKLSILDLRANNFFGTIP---NTFMKESRLGMIDLSHNLFQGRIP--RSLINCSKLEFLDIGDNQIRDIFP 638 (887)
Q Consensus 565 p~~l-~~l~~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~--~~l~~l~~L~~L~L~~N~l~~~~~ 638 (887)
|..+ ..++ +|++|++++|++++..| ..+..+++|++|++++|++++..+ ..+..+++|++|++++|++++ +|
T Consensus 326 p~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp 403 (549)
T 2z81_A 326 PCSFSQHLK-SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MP 403 (549)
T ss_dssp CHHHHHHCT-TCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CC
T ss_pred CHHHHhcCc-cccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CC
Confidence 3333 2333 45555555555554432 224555666666666666654332 346666777777777777764 35
Q ss_pred ccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCccccccccCCccc
Q 040113 639 SWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEW 718 (887)
Q Consensus 639 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 718 (887)
..+..+++|++|++++|++.+.. .. -.++|++|++++|++++.++ .
T Consensus 404 ~~~~~~~~L~~L~Ls~N~l~~l~-~~----~~~~L~~L~Ls~N~l~~~~~-~---------------------------- 449 (549)
T 2z81_A 404 DSCQWPEKMRFLNLSSTGIRVVK-TC----IPQTLEVLDVSNNNLDSFSL-F---------------------------- 449 (549)
T ss_dssp SCCCCCTTCCEEECTTSCCSCCC-TT----SCTTCSEEECCSSCCSCCCC-C----------------------------
T ss_pred hhhcccccccEEECCCCCccccc-ch----hcCCceEEECCCCChhhhcc-c----------------------------
Confidence 66666777777777777766432 11 13578888888888774221 0
Q ss_pred cccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCC
Q 040113 719 LLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLE 798 (887)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~ 798 (887)
.+.|++|+|++|+++ .+|. .+.+++|++|+|++|++++.+|..|+.+++|+
T Consensus 450 ---------------------------l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 500 (549)
T 2z81_A 450 ---------------------------LPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500 (549)
T ss_dssp ---------------------------CTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCC
T ss_pred ---------------------------CChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccC
Confidence 456888899999888 6665 56789999999999999999998899999999
Q ss_pred EEeCCCCcccccCC
Q 040113 799 SLDLSNNNFLGQIP 812 (887)
Q Consensus 799 ~L~Ls~N~l~~~~p 812 (887)
.|++++|++++..|
T Consensus 501 ~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 501 KIWLHTNPWDCSCP 514 (549)
T ss_dssp EEECCSSCBCCCHH
T ss_pred EEEecCCCccCCCc
Confidence 99999999998877
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7.2e-45 Score=424.65 Aligned_cols=476 Identities=21% Similarity=0.208 Sum_probs=318.4
Q ss_pred CCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEc
Q 040113 230 SSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDL 309 (887)
Q Consensus 230 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 309 (887)
++|++|++++|.+++..|..+.++++|++|++++|.+.+..|..|+++++|++|++++|.+++..+..++++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 45666666666665555555666666666666666665555555666666666666666666555555666666666666
Q ss_pred cCCcCCC-CCCchhhccCCCCccEEEccCCCCCCccc-cccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCCC
Q 040113 310 SFNKLSG-EFPWSIVIGNFTQLQSLDFTSNKFSGELH-ASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNS 387 (887)
Q Consensus 310 ~~n~l~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~ 387 (887)
++|.+++ ..|.. ++++++|++|++++|.+.+.++ ..+..+++|++|++++|.+++..|..+..+++|++|+++.|.
T Consensus 106 s~n~l~~~~~~~~--~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 106 MGNPYQTLGVTSL--FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp TTCCCSSSCSSCS--CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred CCCcccccchhhh--hhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 6666653 22333 5566666666666666433443 456666666666666666666666666666666666666666
Q ss_pred CccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCcccChhhhcCCcccEEecccCcccCCCC
Q 040113 388 YRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIP 467 (887)
Q Consensus 388 l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~Ls~n~l~~~~p 467 (887)
+...... .+..+++|++|++++|.+......+. .....+++|+.|++++|.+++..+
T Consensus 184 ~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~---------------------~~~~~~~~L~~L~l~~n~l~~~~~ 240 (549)
T 2z81_A 184 SAFLLEI--FADILSSVRYLELRDTNLARFQFSPL---------------------PVDEVSSPMKKLAFRGSVLTDESF 240 (549)
T ss_dssp STTHHHH--HHHSTTTBSEEEEESCBCTTCCCCCC---------------------SSCCCCCCCCEEEEESCEEEHHHH
T ss_pred ccccchh--hHhhcccccEEEccCCcccccccccc---------------------chhhhhhcccceeccccccchhHH
Confidence 5432221 24456666667666665443321000 011223445555555555544322
Q ss_pred ccccc--cCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhh
Q 040113 468 SWLLD--PSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLC 545 (887)
Q Consensus 468 ~~~~~--~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~ 545 (887)
..+.. ..+++|+.+++++|.+.+...... .....+.
T Consensus 241 ~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~------------------------------------------~~~~~~~ 278 (549)
T 2z81_A 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNP------------------------------------------SESDVVS 278 (549)
T ss_dssp HHHHGGGGGCTTCCEEEEESCEEECCSCCCC------------------------------------------CTTTCCC
T ss_pred HHHHHHhhhhccccccccccccccccccccc------------------------------------------cchhhhh
Confidence 22110 114566666666666554322100 0001133
Q ss_pred CcCCCCeEEcCCCccCCC-----CCCcccccCCcceEEecCCCcccccCCccc-cCCCcccEEEccCCeeeeeCC---cc
Q 040113 546 KLDSLEILVLSHNNLSGL-----LPRCLGSFSDKLSILDLRANNFFGTIPNTF-MKESRLGMIDLSHNLFQGRIP---RS 616 (887)
Q Consensus 546 ~l~~L~~L~Ls~n~l~~~-----~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~---~~ 616 (887)
.+.+|+.|++.++.+... ++..+.... +|+.|++++|++. .+|..+ ..+++|++|++++|++++..| ..
T Consensus 279 ~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 356 (549)
T 2z81_A 279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLLE-KVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC 356 (549)
T ss_dssp CCTTCCEEEEESCBCSCGGGSCCCCHHHHHST-TCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTC
T ss_pred hhcccccccccccccchhhhcccchhhhhhcc-cceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhh
Confidence 456677777777655421 111122233 7999999999987 456554 679999999999999998764 34
Q ss_pred ccCCCCCcEEeCCCCcCCCCCC--ccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhc
Q 040113 617 LINCSKLEFLDIGDNQIRDIFP--SWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLC 694 (887)
Q Consensus 617 l~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~ 694 (887)
+..+++|++|++++|++++..+ ..+..+++|++|++++|++++ +|..+ ..+++|++|++++|+++ .+|..
T Consensus 357 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~--~~~~~L~~L~Ls~N~l~-~l~~~---- 428 (549)
T 2z81_A 357 KGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSC--QWPEKMRFLNLSSTGIR-VVKTC---- 428 (549)
T ss_dssp TTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCC--CCCTTCCEEECTTSCCS-CCCTT----
T ss_pred hhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhh--cccccccEEECCCCCcc-cccch----
Confidence 7889999999999999998743 568899999999999999985 44443 57899999999999987 34421
Q ss_pred cccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCC
Q 040113 695 WNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQ 774 (887)
Q Consensus 695 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~ 774 (887)
+++.|+.|+|++|++++.+ +.+++|+
T Consensus 429 --------------------------------------------------~~~~L~~L~Ls~N~l~~~~----~~l~~L~ 454 (549)
T 2z81_A 429 --------------------------------------------------IPQTLEVLDVSNNNLDSFS----LFLPRLQ 454 (549)
T ss_dssp --------------------------------------------------SCTTCSEEECCSSCCSCCC----CCCTTCC
T ss_pred --------------------------------------------------hcCCceEEECCCCChhhhc----ccCChhc
Confidence 1456899999999999764 5789999
Q ss_pred EEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccccCCCC
Q 040113 775 VLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQG 838 (887)
Q Consensus 775 ~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g~iP~~ 838 (887)
+|+|++|+++ .+|. .+.+++|++|||++|++++.+|..++.+++|++|++++|+++|..|..
T Consensus 455 ~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 516 (549)
T 2z81_A 455 ELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 516 (549)
T ss_dssp EEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHH
T ss_pred EEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccH
Confidence 9999999999 6776 578999999999999999999999999999999999999999988743
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.1e-43 Score=416.36 Aligned_cols=519 Identities=24% Similarity=0.249 Sum_probs=297.6
Q ss_pred CCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCC
Q 040113 128 HLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSN 207 (887)
Q Consensus 128 ~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~ 207 (887)
.+++|||++|+|+.. .|..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|+
T Consensus 53 ~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-------------------- 111 (635)
T 4g8a_A 53 STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-------------------- 111 (635)
T ss_dssp TCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC--------------------
T ss_pred CCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc--------------------
Confidence 567777777776653 33456667777777777776655445555555555555555554
Q ss_pred CCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCC-cchhhccCCCCCCEEEcc
Q 040113 208 LETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLG-ELPVSIGNLHSLKKLDLS 286 (887)
Q Consensus 208 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~ 286 (887)
+++..+..|.++++|++|++++|++++..+..|+++++|++|++++|.+.+ ..|..++.+++|++|+++
T Consensus 112 ----------l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 181 (635)
T 4g8a_A 112 ----------IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 181 (635)
T ss_dssp ----------CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred ----------CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc
Confidence 444444556666666666666666665555556666666777776666654 345666666777777777
Q ss_pred CCCCCCccchhhhCCCC----CCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCc-cccccCCCCCccEEEccC
Q 040113 287 INNLSGELPTSIQNLVS----LEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGE-LHASIGNLRSLEVLAIGR 361 (887)
Q Consensus 287 ~n~l~~~~~~~l~~l~~----L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~ 361 (887)
+|.+++..+..+..+.+ +..++++.|.+....+. ......++.+++.+|..... .+..+..+..++...+..
T Consensus 182 ~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~---~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~ 258 (635)
T 4g8a_A 182 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG---AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 258 (635)
T ss_dssp SSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT---TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEE
T ss_pred CccccccccccccchhhhhhhhhhhhcccCcccccCcc---cccchhhhhhhhhcccccccccchhhcCCcccccccccc
Confidence 77766655555554433 23566666666532222 22233455666666544322 223344455555444432
Q ss_pred CcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCcc
Q 040113 362 CNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIE 441 (887)
Q Consensus 362 n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~ 441 (887)
+...... .++. .... .+.....+...++..+..... ...
T Consensus 259 ~~~~~~~--------~l~~----------~~~~--~~~~~~~l~~~~l~~~~~~~~---------------------~~~ 297 (635)
T 4g8a_A 259 GEFRNEG--------NLEK----------FDKS--ALEGLCNLTIEEFRLAYLDYY---------------------LDG 297 (635)
T ss_dssp ECCTTSC--------CCSC----------CCTT--TTGGGGGSEEEEEEEECCCSC---------------------EEE
T ss_pred ccccccc--------cccc----------cccc--ccccccchhhhhhhhhhhccc---------------------ccc
Confidence 2211100 0000 0000 011112222222221110000 001
Q ss_pred cChhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCC
Q 040113 442 FPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPV 521 (887)
Q Consensus 442 ~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~ 521 (887)
++..+.....++.+++.++.+....+.. . ...++.|++.+|.+..+...
T Consensus 298 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~--~--~~~L~~L~l~~~~~~~~~~~--------------------------- 346 (635)
T 4g8a_A 298 IIDLFNCLTNVSSFSLVSVTIERVKDFS--Y--NFGWQHLELVNCKFGQFPTL--------------------------- 346 (635)
T ss_dssp CTTTTGGGTTCSEEEEESCEEEECGGGG--S--CCCCSEEEEESCEESSCCCC---------------------------
T ss_pred hhhhhhhhcccccccccccccccccccc--c--chhhhhhhcccccccCcCcc---------------------------
Confidence 2222334445555555555444322111 1 33444444444444332211
Q ss_pred CCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCccc--ccCCccccCCCcc
Q 040113 522 PPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFF--GTIPNTFMKESRL 599 (887)
Q Consensus 522 ~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~--~~~~~~~~~l~~L 599 (887)
.+..|+.+++.+|.+.... ....++ +|+.+++++|.+. +..+..+..+.+|
T Consensus 347 ------------------------~l~~L~~l~l~~n~~~~~~--~~~~l~-~L~~L~ls~n~l~~~~~~~~~~~~~~~L 399 (635)
T 4g8a_A 347 ------------------------KLKSLKRLTFTSNKGGNAF--SEVDLP-SLEFLDLSRNGLSFKGCCSQSDFGTISL 399 (635)
T ss_dssp ------------------------BCTTCCEEEEESCCSCCBC--CCCBCT-TCCEEECCSSCCBEEEECCHHHHSCSCC
T ss_pred ------------------------cchhhhhcccccccCCCCc--cccccc-ccccchhhccccccccccccchhhhhhh
Confidence 1234445555555443221 122333 4666666666553 2334445556667
Q ss_pred cEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCC-ccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEc
Q 040113 600 GMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFP-SWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDL 678 (887)
Q Consensus 600 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~L 678 (887)
++++++.|.+... +..+..+++|+.+++..|......+ ..+..+++++.++++.|.+.+..+..+ ..+++|+.|++
T Consensus 400 ~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~--~~~~~L~~L~L 476 (635)
T 4g8a_A 400 KYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKM 476 (635)
T ss_dssp CEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEEC
T ss_pred hhhhccccccccc-cccccccccccchhhhhcccccccccccccccccccccccccccccccccccc--ccchhhhhhhh
Confidence 7777777666643 3456666777777777666554433 345667777777777777776665544 56677777787
Q ss_pred CCCcCcccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCc
Q 040113 679 SNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNR 758 (887)
Q Consensus 679 s~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~ 758 (887)
++|.+...++...|. ..+.|+.|||++|+
T Consensus 477 s~N~~~~~~~~~~~~---------------------------------------------------~l~~L~~L~Ls~N~ 505 (635)
T 4g8a_A 477 AGNSFQENFLPDIFT---------------------------------------------------ELRNLTFLDLSQCQ 505 (635)
T ss_dssp TTCEEGGGEECSCCT---------------------------------------------------TCTTCCEEECTTSC
T ss_pred hhcccccccCchhhh---------------------------------------------------hccccCEEECCCCc
Confidence 777654332211111 14568889999999
Q ss_pred CCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCC-CCCCeeecccCcccc
Q 040113 759 FDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVEL-TFLEFFNVSDNYLTG 833 (887)
Q Consensus 759 l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L-~~L~~L~ls~N~l~g 833 (887)
+++.+|..|+++++|++|+|++|++++..|..|+++++|++|||++|++++.+|+.+..+ ++|++|++++|++++
T Consensus 506 L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 506 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred cCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 998889999999999999999999999888889999999999999999999999999888 689999999999886
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.4e-45 Score=430.99 Aligned_cols=463 Identities=21% Similarity=0.309 Sum_probs=276.8
Q ss_pred CCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCC------C------ccccccCCCCCCcEEeCcCCCCCCcchhh
Q 040113 206 SNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQ------G------RIQSSLGNLSKLLHLDLSLNELLGELPVS 273 (887)
Q Consensus 206 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~------~------~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 273 (887)
.+++.|+|+++.+.|.+|..++++++|++|++++|.+. + .+|... +..|+ ++++.+.+.+.+|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 37788888888888888888888888888888888651 1 222222 33445 566666666555544
Q ss_pred ccCC-CCCCEEEccCCCCCCccchhhhCCCCCCEEEcc--CCcCCCCCCchhhccCCCCccEEEccCCCCCCc-------
Q 040113 274 IGNL-HSLKKLDLSINNLSGELPTSIQNLVSLEELDLS--FNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGE------- 343 (887)
Q Consensus 274 l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~--~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~------- 343 (887)
+..+ ..+..+++....+.. .....++.+.+. .|++++ +|.. ++++++|++|++++|.+++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~--l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 228 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKA--VMRLTKLRQFYMGNSPFVAENICEAWE 228 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGG--GGGCTTCCEEEEESCCCCGGGBSSSCS
T ss_pred HHHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHH--HhcccCCCEEECcCCcccccccccccc
Confidence 4311 111111111111110 011122222222 456666 6665 66777777777777777764
Q ss_pred ----------cccccC--CCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCCC-Ccc-ccchhhhhcCC------CC
Q 040113 344 ----------LHASIG--NLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNS-YRG-TMELDFLLVSL------KN 403 (887)
Q Consensus 344 ----------~~~~l~--~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~~~l~~l------~~ 403 (887)
+|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ ..|.. +..+ ++
T Consensus 229 ~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~--~~~L~~~~~l~~ 306 (636)
T 4eco_A 229 NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD--WQALADAPVGEK 306 (636)
T ss_dssp CTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHH--HHHHHHSGGGGT
T ss_pred ccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHH--HHhhhccccCCC
Confidence 777777 78888888888888877788788888888888888887 766 45543 2222 33
Q ss_pred CCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCcccCh--hhhcCCcccEEecccCcccCCCCccccccCCCCCcEE
Q 040113 404 LEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPN--FLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSAL 481 (887)
Q Consensus 404 L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~--~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L 481 (887)
|++|++++| .+..+|. .++.+++|+.|++++|+++|.+| .+.. +++|++|
T Consensus 307 L~~L~L~~n-------------------------~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~--l~~L~~L 358 (636)
T 4eco_A 307 IQIIYIGYN-------------------------NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS--EIKLASL 358 (636)
T ss_dssp CCEEECCSS-------------------------CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEE--EEEESEE
T ss_pred CCEEECCCC-------------------------cCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCC--CCCCCEE
Confidence 444444333 2223444 55555666666666666555555 3322 3333333
Q ss_pred EccCCcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCcCC-CCeEEcCCCcc
Q 040113 482 NLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDS-LEILVLSHNNL 560 (887)
Q Consensus 482 ~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~-L~~L~Ls~n~l 560 (887)
++++|.++ .+|..+..+++ |++|++++|.+
T Consensus 359 ~L~~N~l~-------------------------------------------------~lp~~l~~l~~~L~~L~Ls~N~l 389 (636)
T 4eco_A 359 NLAYNQIT-------------------------------------------------EIPANFCGFTEQVENLSFAHNKL 389 (636)
T ss_dssp ECCSSEEE-------------------------------------------------ECCTTSEEECTTCCEEECCSSCC
T ss_pred ECCCCccc-------------------------------------------------cccHhhhhhcccCcEEEccCCcC
Confidence 33333222 22333444555 55555555555
Q ss_pred CCCCCCcccccC-CcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCc
Q 040113 561 SGLLPRCLGSFS-DKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPS 639 (887)
Q Consensus 561 ~~~~p~~l~~l~-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 639 (887)
+ .+|..+.... .+|++|++++|++++..|..+.... .....+++|++|++++|+++...+.
T Consensus 390 ~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~-----------------~~~~~~~~L~~L~Ls~N~l~~lp~~ 451 (636)
T 4eco_A 390 K-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD-----------------PTPFKGINVSSINLSNNQISKFPKE 451 (636)
T ss_dssp S-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC-----------------SSCCCCCCEEEEECCSSCCCSCCTH
T ss_pred c-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccc-----------------cccccCCCCCEEECcCCccCcCCHH
Confidence 5 4454443321 1355555555555554444444000 0000444555555555555544333
Q ss_pred cccCCCCCCEEEccCCcccccCCCCccc------cCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCcccccccc
Q 040113 640 WLGTLPNLTVLILQSNKFYGIIREPRID------CGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVI 713 (887)
Q Consensus 640 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~------~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~ 713 (887)
.+..+++|++|++++|+++. +|..... .++++|+.|++++|+++ .+|...+.
T Consensus 452 ~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-------------------- 509 (636)
T 4eco_A 452 LFSTGSPLSSINLMGNMLTE-IPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA-------------------- 509 (636)
T ss_dssp HHHTTCCCSEEECCSSCCSB-CCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST--------------------
T ss_pred HHccCCCCCEEECCCCCCCC-cCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh--------------------
Confidence 44445556666666665552 2222111 12337888888888887 67754210
Q ss_pred CCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeC------CCCcccccC
Q 040113 714 SPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNL------DNNNLQGHI 787 (887)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~L------s~N~l~~~~ 787 (887)
...+.|+.|+|++|++++ +|..++++++|++|+| ++|++.+.+
T Consensus 510 ------------------------------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~ 558 (636)
T 4eco_A 510 ------------------------------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREW 558 (636)
T ss_dssp ------------------------------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCC
T ss_pred ------------------------------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccC
Confidence 004568889999999987 8888889999999999 568889999
Q ss_pred CccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccc
Q 040113 788 PSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTG 833 (887)
Q Consensus 788 p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g 833 (887)
|..++++++|++|+|++|++ +.+|..+. ++|++|++++|++..
T Consensus 559 p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 559 PEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred hHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 99999999999999999999 68888766 799999999998874
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5e-44 Score=414.30 Aligned_cols=229 Identities=22% Similarity=0.273 Sum_probs=156.3
Q ss_pred CCCCeEEcCCCccCCCCCCcc-----cccCCcceEEecCCCcccccCC-ccccCC---CcccEEEccCCeeeeeCCcccc
Q 040113 548 DSLEILVLSHNNLSGLLPRCL-----GSFSDKLSILDLRANNFFGTIP-NTFMKE---SRLGMIDLSHNLFQGRIPRSLI 618 (887)
Q Consensus 548 ~~L~~L~Ls~n~l~~~~p~~l-----~~l~~~L~~L~L~~N~l~~~~~-~~~~~l---~~L~~L~Ls~N~l~~~~~~~l~ 618 (887)
++|++|++++|.++|.+|..+ ..+. +|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.... .+.
T Consensus 247 ~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~-~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~ 321 (520)
T 2z7x_B 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLK-ALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPS 321 (520)
T ss_dssp SSCSEEEEEEEEEESCCCCCCCCCCSCCCC-EEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCS
T ss_pred CcccEEEeecccccCccccchhhcccccCc-eeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chh
Confidence 456666666666666666665 5555 566777776666 333 333332 45777777777765332 125
Q ss_pred CCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccc
Q 040113 619 NCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAM 698 (887)
Q Consensus 619 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l 698 (887)
.+++|++|++++|++++..|..++.+++|++|++++|++.+....+.....+++|++|++++|++++.+|...+..
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~---- 397 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW---- 397 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC----
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc----
Confidence 6677777777777777777777777777777777777776531111112567778888888887776566431110
Q ss_pred hhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeC
Q 040113 699 KIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNL 778 (887)
Q Consensus 699 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~L 778 (887)
++.|+.|++++|.+++.+|..+. ++|++|+|
T Consensus 398 -----------------------------------------------l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~L 428 (520)
T 2z7x_B 398 -----------------------------------------------TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDL 428 (520)
T ss_dssp -----------------------------------------------CTTCCEEECCSSCCCGGGGGSCC--TTCCEEEC
T ss_pred -----------------------------------------------CccCCEEECcCCCCCcchhhhhc--ccCCEEEC
Confidence 35678888888888877776654 68888888
Q ss_pred CCCcccccCCccccCCCCCCEEeCCCCcccccCCcc-ccCCCCCCeeecccCcccccCC
Q 040113 779 DNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQ-LVELTFLEFFNVSDNYLTGPIP 836 (887)
Q Consensus 779 s~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~-l~~L~~L~~L~ls~N~l~g~iP 836 (887)
++|+++ .+|..+..+++|++|+|++|++++ +|.. +..+++|++|++++|++++..|
T Consensus 429 s~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 429 HSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence 888888 777777788888888888888885 4544 8888888889999888887554
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.6e-43 Score=421.60 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=58.0
Q ss_pred ecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCccc
Q 040113 755 SSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLT 832 (887)
Q Consensus 755 s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~ 832 (887)
++|++.+.+|..++++++|+.|+|++|++ +.+|..+. ++|+.|||++|++....+..+.....+..+.+++|++.
T Consensus 790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 790 EGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred ccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 35666677788888888888899988888 67887766 58888999988888777777766666777777777654
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.4e-43 Score=406.36 Aligned_cols=424 Identities=21% Similarity=0.235 Sum_probs=249.1
Q ss_pred cCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCC-cchhhccCCCCCCE
Q 040113 204 KLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLG-ELPVSIGNLHSLKK 282 (887)
Q Consensus 204 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~ 282 (887)
.+++|++|++++|++.+..|..|+++++|++|++++|.++ .+|.. .+++|++|++++|.+++ .+|..++++++|++
T Consensus 43 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~ 119 (520)
T 2z7x_B 43 SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKF 119 (520)
T ss_dssp TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCE
T ss_pred ccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceE
Confidence 3333333333333444444445555555555555555554 23333 45555555555555544 24455555555555
Q ss_pred EEccCCCCCCccchhhhCCCCC--CEEEccCCcC--CCCCCchhhccCCC-CccEEEccCCCCCCcccc-ccCCCCCccE
Q 040113 283 LDLSINNLSGELPTSIQNLVSL--EELDLSFNKL--SGEFPWSIVIGNFT-QLQSLDFTSNKFSGELHA-SIGNLRSLEV 356 (887)
Q Consensus 283 L~L~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~-~l~~l~~L~~ 356 (887)
|++++|.+++ ..+..+++| ++|++++|.+ .+..|.. +..+. ....+++++|.+.+.++. .+..+++|+.
T Consensus 120 L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~--l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~ 194 (520)
T 2z7x_B 120 LGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEG--LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194 (520)
T ss_dssp EEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTT--TTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEE
T ss_pred EEecCcccch---hhccccccceeeEEEeeccccccccccccc--ccccccceEEEEeccCcchhhhhhhhhhcccceee
Confidence 5555555543 223344444 5555555555 3333332 22222 122334444444333222 2334444444
Q ss_pred EEccCCc-------CCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCe
Q 040113 357 LAIGRCN-------FSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKF 429 (887)
Q Consensus 357 L~L~~n~-------i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L 429 (887)
|++++|. +.+.++ .+..+++|++|++++|.+.+.....
T Consensus 195 L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~---------------------------------- 239 (520)
T 2z7x_B 195 SNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIR---------------------------------- 239 (520)
T ss_dssp CCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHH----------------------------------
T ss_pred ccccccccccccceeecchh-hhccccchhhccccccccCHHHHHH----------------------------------
Confidence 4444443 222222 3333444444444444333221110
Q ss_pred eEEeeCCCCCcccChhhhcCCcccEEecccCcccCCCCccc-----cccCCCCCcEEEccCCcccCccccccccCCcccc
Q 040113 430 TVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWL-----LDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRF 504 (887)
Q Consensus 430 ~~l~l~~~~l~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~-----~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 504 (887)
++..+ ..++|++|++++|++++.+|..+ .. +++|+.+++++|.+ .++...+........
T Consensus 240 ------------~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~--l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~ 303 (520)
T 2z7x_B 240 ------------ILQLV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTS--LKALSIHQVVSDVF-GFPQSYIYEIFSNMN 303 (520)
T ss_dssp ------------HHHHH-HTSSCSEEEEEEEEEESCCCCCCCCCCSCC--CCEEEEEEEEECCC-CSCTHHHHHHHHTCC
T ss_pred ------------HHHHh-hhCcccEEEeecccccCccccchhhccccc--CceeEeccccccce-ecchhhhhcccccCc
Confidence 01111 12344555555555554444444 22 44555555555544 222111000000122
Q ss_pred ccEEeCCCcccccCC-CCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCC--CCCCcccccCCcceEEecC
Q 040113 505 LLTLDLSSNNLQGPL-PVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSG--LLPRCLGSFSDKLSILDLR 581 (887)
Q Consensus 505 L~~L~ls~n~l~~~~-~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~~L~~L~L~ 581 (887)
++.|++++|.+.... +...++++++++++|++.+.+|..++.+++|++|++++|++++ .+|..+..++ +|++|+++
T Consensus 304 L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~-~L~~L~Ls 382 (520)
T 2z7x_B 304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK-SLQQLDIS 382 (520)
T ss_dssp CSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT-TCCEEECC
T ss_pred eeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCC-CCCEEECC
Confidence 556666666555433 2445677888888888888888889999999999999999986 5667788888 79999999
Q ss_pred CCcccccCCc-cccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCccccc
Q 040113 582 ANNFFGTIPN-TFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGI 660 (887)
Q Consensus 582 ~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 660 (887)
+|++++.+|. .+..+++|++|++++|++++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++..
T Consensus 383 ~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l 459 (520)
T 2z7x_B 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSV 459 (520)
T ss_dssp SSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred CCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCcc
Confidence 9999985554 588899999999999999988877665 79999999999999 5577777999999999999999965
Q ss_pred CCCCccccCCCCCCEEEcCCCcCcccCChhhh
Q 040113 661 IREPRIDCGFSKLRIIDLSNNRFTGKLPSKSF 692 (887)
Q Consensus 661 ~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~ 692 (887)
.+. .+..+++|++|++++|++++.++..++
T Consensus 460 ~~~--~~~~l~~L~~L~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 460 PDG--IFDRLTSLQKIWLHTNPWDCSCPRIDY 489 (520)
T ss_dssp CTT--TTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred CHH--HhccCCcccEEECcCCCCcccCCchHH
Confidence 433 236789999999999999998876555
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.1e-41 Score=401.60 Aligned_cols=555 Identities=22% Similarity=0.211 Sum_probs=352.9
Q ss_pred CCCCCCC-CCCCCCCCCCC-CCCCCccc----cceEecCC---------CCcEEEEEcCCCcccccccCCcccccCCCCC
Q 040113 66 YPWSSGC-RPKAASWKPEE-GNIDCCSW----DGVECSEN---------TGHVMKLDLSNSCLYGSINSSSSLFKLVHLE 130 (887)
Q Consensus 66 ~~~~~~~-~~~~~~w~~~~-~~~~~c~w----~gv~c~~~---------~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~ 130 (887)
.||+.+. ...+++|...- ...+.|.| ..|.|... +..+++|||++|.+++..+. +|.++++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~p~~~~~c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~--~f~~l~~L~ 79 (635)
T 4g8a_A 2 SPWDYKDDDDKLAAANSSIPESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSY--SFFSFPELQ 79 (635)
T ss_dssp -----------------------CCSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTT--TTTTCTTCC
T ss_pred CccccCCCcchhhcccCCCCCCCCCccccCCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHH--HHhCCCCCC
Confidence 3566533 23456665321 11233544 24678532 24789999999999876555 899999999
Q ss_pred eEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCE
Q 040113 131 WLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLET 210 (887)
Q Consensus 131 ~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~ 210 (887)
+|+|++|+|++. .|..|+++++|++|+|++|++.+..+..|.++++|++|++++|++..+. +..++++++|++
T Consensus 80 ~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~------~~~~~~L~~L~~ 152 (635)
T 4g8a_A 80 VLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE------NFPIGHLKTLKE 152 (635)
T ss_dssp EEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCST------TCCCTTCTTCCE
T ss_pred EEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCC------hhhhhcCcccCe
Confidence 999999999875 4567999999999999999997766677899999999999999865543 335778888888
Q ss_pred EEccCCCCCCC-chhhhcCCCCCCEEEcccCCCCCccccccCCCCCC----cEEeCcCCCCCCcchhhccCCCCCCEEEc
Q 040113 211 LDLGYVSIRST-IPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKL----LHLDLSLNELLGELPVSIGNLHSLKKLDL 285 (887)
Q Consensus 211 L~L~~n~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L----~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 285 (887)
|++++|.+.+. .|..++.+++|++|++++|++++..+..+..++++ ..++++.|.+....+ .......++.+++
T Consensus 153 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~-~~~~~~~~~~l~l 231 (635)
T 4g8a_A 153 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP-GAFKEIRLHKLTL 231 (635)
T ss_dssp EECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECT-TTTTTCEEEEEEE
T ss_pred eccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCc-ccccchhhhhhhh
Confidence 88888888653 56777888888888888888887777776554433 367778887764333 3334455667777
Q ss_pred cCCCCCCc-cchhhhCCCCCCEEEccCCcCCC------CCCchhhccCCCCccEEEccCCCCCC---ccccccCCCCCcc
Q 040113 286 SINNLSGE-LPTSIQNLVSLEELDLSFNKLSG------EFPWSIVIGNFTQLQSLDFTSNKFSG---ELHASIGNLRSLE 355 (887)
Q Consensus 286 ~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~------~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~ 355 (887)
.+|..... .+..+..+..++...+..+.... ..... +.....+....+..+.... ..+..+..+.+++
T Consensus 232 ~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~--~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 309 (635)
T 4g8a_A 232 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA--LEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVS 309 (635)
T ss_dssp ESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTT--TGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCS
T ss_pred hcccccccccchhhcCCcccccccccccccccccccccccccc--cccccchhhhhhhhhhhcccccchhhhhhhhcccc
Confidence 77765432 33455666666666554322211 11111 2233334444433332211 1122233334444
Q ss_pred EEEccCCcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeC
Q 040113 356 VLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLR 435 (887)
Q Consensus 356 ~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~ 435 (887)
.+.+.++.+... ..+.....++.|++.+|.+.+... ..++.|+.+++..|
T Consensus 310 ~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~-----~~l~~L~~l~l~~n----------------------- 359 (635)
T 4g8a_A 310 SFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT-----LKLKSLKRLTFTSN----------------------- 359 (635)
T ss_dssp EEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC-----CBCTTCCEEEEESC-----------------------
T ss_pred cccccccccccc--cccccchhhhhhhcccccccCcCc-----ccchhhhhcccccc-----------------------
Confidence 555444443322 122333444555554444432221 12333444444443
Q ss_pred CCCCcccChhhhcCCcccEEecccCcccC--CCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCc
Q 040113 436 SCNLIEFPNFLKNQHHLMLLDLSSNRIHG--KIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSN 513 (887)
Q Consensus 436 ~~~l~~~~~~l~~~~~L~~L~Ls~n~l~~--~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n 513 (887)
.....+. ...+++|+.+++++|.+.. ..+..... +.+|+.+++..+......... .
T Consensus 360 --~~~~~~~-~~~l~~L~~L~ls~n~l~~~~~~~~~~~~--~~~L~~L~~~~~~~~~~~~~~----~------------- 417 (635)
T 4g8a_A 360 --KGGNAFS-EVDLPSLEFLDLSRNGLSFKGCCSQSDFG--TISLKYLDLSFNGVITMSSNF----L------------- 417 (635)
T ss_dssp --CSCCBCC-CCBCTTCCEEECCSSCCBEEEECCHHHHS--CSCCCEEECCSCSEEEECSCC----T-------------
T ss_pred --cCCCCcc-cccccccccchhhccccccccccccchhh--hhhhhhhhccccccccccccc----c-------------
Confidence 2221111 1234445555555554432 12222222 444455554444433322211 1
Q ss_pred ccccCCCCCCCCCcEEEccCccccccCC-hhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcc-cccCCc
Q 040113 514 NLQGPLPVPPSRTVNYLVSNNSFIGEIP-SWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNF-FGTIPN 591 (887)
Q Consensus 514 ~l~~~~~~~~~~l~~l~l~~n~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l-~~~~~~ 591 (887)
...+++.+++..++.....+ ..+..+++++.++++.|.+.+..+..+..++ .|+.|++++|++ .+..|.
T Consensus 418 --------~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~-~L~~L~Ls~N~~~~~~~~~ 488 (635)
T 4g8a_A 418 --------GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPD 488 (635)
T ss_dssp --------TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT-TCCEEECTTCEEGGGEECS
T ss_pred --------ccccccchhhhhccccccccccccccccccccccccccccccccccccccch-hhhhhhhhhcccccccCch
Confidence 12334444444444333332 4567889999999999999988888888887 799999999985 456788
Q ss_pred cccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCC-
Q 040113 592 TFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGF- 670 (887)
Q Consensus 592 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l- 670 (887)
.|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+ ..+
T Consensus 489 ~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l--~~l~ 566 (635)
T 4g8a_A 489 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL--QHFP 566 (635)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT--TCCC
T ss_pred hhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH--Hhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999988766 555
Q ss_pred CCCCEEEcCCCcCcccCChhhhhcc
Q 040113 671 SKLRIIDLSNNRFTGKLPSKSFLCW 695 (887)
Q Consensus 671 ~~L~~L~Ls~N~l~~~ip~~~~~~~ 695 (887)
++|+.|++++|++.+.+...+|..|
T Consensus 567 ~~L~~L~L~~Np~~C~C~~~~~~~w 591 (635)
T 4g8a_A 567 SSLAFLNLTQNDFACTCEHQSFLQW 591 (635)
T ss_dssp TTCCEEECTTCCBCCSGGGHHHHHH
T ss_pred CcCCEEEeeCCCCcccCCcHHHHHH
Confidence 6899999999999998876666554
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.3e-41 Score=397.40 Aligned_cols=184 Identities=24% Similarity=0.343 Sum_probs=127.9
Q ss_pred CcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEE
Q 040113 597 SRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRII 676 (887)
Q Consensus 597 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L 676 (887)
.+|+.|++++|.+.... ....+++|++|++++|++++..|..+..+++|++|++++|++++..+.+..+..+++|+.|
T Consensus 331 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L 408 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETL 408 (562)
T ss_dssp CCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEE
T ss_pred CcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEE
Confidence 35666666666654321 1245667777777777777766677777777777777777776532211122566777777
Q ss_pred EcCCCcCcccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeec
Q 040113 677 DLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSS 756 (887)
Q Consensus 677 ~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 756 (887)
++++|++++.+|...+.. ++.|+.|++++
T Consensus 409 ~l~~N~l~~~~~~~~~~~---------------------------------------------------l~~L~~L~l~~ 437 (562)
T 3a79_B 409 DVSLNSLNSHAYDRTCAW---------------------------------------------------AESILVLNLSS 437 (562)
T ss_dssp ECTTSCCBSCCSSCCCCC---------------------------------------------------CTTCCEEECCS
T ss_pred ECCCCcCCCccChhhhcC---------------------------------------------------cccCCEEECCC
Confidence 777777776566432111 35677888888
Q ss_pred CcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCcc-ccCCCCCCeeecccCcccccC
Q 040113 757 NRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQ-LVELTFLEFFNVSDNYLTGPI 835 (887)
Q Consensus 757 N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~-l~~L~~L~~L~ls~N~l~g~i 835 (887)
|++++.+|..+. ++|++|+|++|+++ .+|..+.++++|++|+|++|++++ +|.. +..+++|++|++++|++++..
T Consensus 438 n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 438 NMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp SCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred CCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCc
Confidence 888877776554 68888899988888 677777788899999999999884 5554 888889999999999988866
Q ss_pred CC
Q 040113 836 PQ 837 (887)
Q Consensus 836 P~ 837 (887)
|.
T Consensus 514 ~~ 515 (562)
T 3a79_B 514 PG 515 (562)
T ss_dssp HH
T ss_pred ch
Confidence 53
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.5e-40 Score=386.46 Aligned_cols=450 Identities=20% Similarity=0.185 Sum_probs=307.9
Q ss_pred CCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEcc
Q 040113 207 NLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLS 286 (887)
Q Consensus 207 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 286 (887)
+|++|++++|.+.+..+..+.++++|++|++++|.+++..|..|.++++|++|++++|.++ .+|.. .+++|++|+++
T Consensus 53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLS 129 (562)
T ss_dssp TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECC
T ss_pred CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECC
Confidence 4444445555555555566666777777777777776666666777777777777777765 45544 67777777777
Q ss_pred CCCCCC-ccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCc--cEEEccCCCC--CCccccccCCCC-CccEEEcc
Q 040113 287 INNLSG-ELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQL--QSLDFTSNKF--SGELHASIGNLR-SLEVLAIG 360 (887)
Q Consensus 287 ~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~l~~l~-~L~~L~L~ 360 (887)
+|.+++ ..|..++++++|++|++++|++++.. +..+++| +.|++++|.+ ++..|..+..+. ..-.++++
T Consensus 130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~-----~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 204 (562)
T 3a79_B 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD-----LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH 204 (562)
T ss_dssp SSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT-----TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEEC
T ss_pred CCCccccCchHhhcccCcccEEecCCCccccCc-----hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEec
Confidence 777765 23567777777777777777776421 3344444 7777777777 666666665543 12245667
Q ss_pred CCcCCccCCc-cccCCCCCCEEEcCCCCCcc--ccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCC
Q 040113 361 RCNFSGRIPS-SLRNLTQLITLDLSQNSYRG--TMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSC 437 (887)
Q Consensus 361 ~n~i~~~~~~-~l~~l~~L~~L~L~~n~l~~--~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~ 437 (887)
+|.+.+.++. .+..+++|+.+++++|.... .......+..+++|+.++++++.+.. +
T Consensus 205 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~--------------------~ 264 (562)
T 3a79_B 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW--------------------K 264 (562)
T ss_dssp SSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH--------------------H
T ss_pred CccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH--------------------H
Confidence 7776665443 35567778888888775211 00111125667777777776653321 1
Q ss_pred CCcccChhhhcCCcccEEecccCcccCCCCccccccC---CCCCcEEEccCCcccCccccccccCCccccccEEeCCCcc
Q 040113 438 NLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPS---TQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNN 514 (887)
Q Consensus 438 ~l~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~---~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~ 514 (887)
.+..++..+ ..++|++|++++|.+++.+|..++... ++.|+.++++.+.+ .++............++.|++++|.
T Consensus 265 ~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~ 342 (562)
T 3a79_B 265 CSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTP 342 (562)
T ss_dssp HHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSC
T ss_pred HHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCC
Confidence 111222222 234788888888888877777663211 33344444444444 2221111000011348888888888
Q ss_pred cccCCC-CCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCC--CCCcccccCCcceEEecCCCcccccCC-
Q 040113 515 LQGPLP-VPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGL--LPRCLGSFSDKLSILDLRANNFFGTIP- 590 (887)
Q Consensus 515 l~~~~~-~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~~L~~L~L~~N~l~~~~~- 590 (887)
+..... ...++++++++++|++.+.+|..+..+++|++|++++|++++. +|..+..++ +|++|++++|++++.+|
T Consensus 343 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~ 421 (562)
T 3a79_B 343 FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS-SLETLDVSLNSLNSHAYD 421 (562)
T ss_dssp CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCT-TCCEEECTTSCCBSCCSS
T ss_pred cccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCC-CCCEEECCCCcCCCccCh
Confidence 765443 5577899999999999998999999999999999999999863 356688888 79999999999998455
Q ss_pred ccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCC
Q 040113 591 NTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGF 670 (887)
Q Consensus 591 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l 670 (887)
..+..+++|++|++++|++++..|..+. ++|++|++++|+++.+ |..+..+++|++|++++|++++..+. .+..+
T Consensus 422 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~L~~N~l~~l~~~--~~~~l 496 (562)
T 3a79_B 422 RTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSI-PKDVTHLQALQELNVASNQLKSVPDG--VFDRL 496 (562)
T ss_dssp CCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCC-CTTTTSSCCCSEEECCSSCCCCCCTT--STTTC
T ss_pred hhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCccc-ChhhcCCCCCCEEECCCCCCCCCCHH--HHhcC
Confidence 4688999999999999999987776654 7999999999999955 66666999999999999999965443 23678
Q ss_pred CCCCEEEcCCCcCcccCChhhh
Q 040113 671 SKLRIIDLSNNRFTGKLPSKSF 692 (887)
Q Consensus 671 ~~L~~L~Ls~N~l~~~ip~~~~ 692 (887)
++|+.|++++|++.+.+|...+
T Consensus 497 ~~L~~L~l~~N~~~c~c~~~~~ 518 (562)
T 3a79_B 497 TSLQYIWLHDNPWDCTCPGIRY 518 (562)
T ss_dssp TTCCCEECCSCCBCCCHHHHHH
T ss_pred CCCCEEEecCCCcCCCcchHHH
Confidence 9999999999999998886655
No 25
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.3e-39 Score=347.88 Aligned_cols=293 Identities=32% Similarity=0.516 Sum_probs=197.7
Q ss_pred CCCHHHHHHHHHhhhcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCcc--ccceEecCCC--CcEEEEEcCCCc
Q 040113 37 LCHDDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKPEEGNIDCCS--WDGVECSENT--GHVMKLDLSNSC 112 (887)
Q Consensus 37 ~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~ 112 (887)
.|.++|++||++||+++.++. .+.+|.. +.+||. |.||+|+..+ ++|++|+|+++.
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-----------------~l~~W~~---~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~ 61 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-----------------TLSSWLP---TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-----------------GGTTCCT---TSCTTTTCSTTEEECCSSSCCCEEEEEEECCC
T ss_pred CCCHHHHHHHHHHHHhcCCcc-----------------cccCCCC---CCCCCcCCCcceEeCCCCCCceEEEEECCCCC
Confidence 589999999999999986432 4789976 578998 9999998654 799999999999
Q ss_pred ccc--cccCCcccccCCCCCeEECCC-CCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCC
Q 040113 113 LYG--SINSSSSLFKLVHLEWLNLAF-NDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGY 189 (887)
Q Consensus 113 l~~--~~~~~~~l~~l~~L~~L~L~~-n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~ 189 (887)
+.| .++. .+.++++|++|+|++ |.+.+. +|..|+++++|++|++++|.+.+.+|..+.++++|++|++++|.
T Consensus 62 l~~~~~~~~--~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-- 136 (313)
T 1ogq_A 62 LPKPYPIPS--SLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA-- 136 (313)
T ss_dssp CSSCEECCG--GGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE--
T ss_pred ccCCcccCh--hHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCc--
Confidence 988 6655 788888888888884 777765 78888888888888888888877788777777777777777765
Q ss_pred CccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCC-CCcEEeCcCCCCCC
Q 040113 190 GLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLS-KLLHLDLSLNELLG 268 (887)
Q Consensus 190 ~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~ 268 (887)
+.+.+|..+..+++|++|++++|.+++.+|..+..++ +|++|++++|.+.+
T Consensus 137 ----------------------------l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~ 188 (313)
T 1ogq_A 137 ----------------------------LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188 (313)
T ss_dssp ----------------------------EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE
T ss_pred ----------------------------cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec
Confidence 3334444444445555555555555444555555554 55555555555555
Q ss_pred cchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCcccccc
Q 040113 269 ELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASI 348 (887)
Q Consensus 269 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 348 (887)
.+|..+..++ |++|++++|.+++..|..+..+++|++|++++|.+++.++. +..+++|++|++++|++++.+|..+
T Consensus 189 ~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~l~~L~~L~Ls~N~l~~~~p~~l 264 (313)
T 1ogq_A 189 KIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK---VGLSKNLNGLDLRNNRIYGTLPQGL 264 (313)
T ss_dssp ECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG---CCCCTTCCEEECCSSCCEECCCGGG
T ss_pred cCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc---ccccCCCCEEECcCCcccCcCChHH
Confidence 5555555554 55555555555555555555555556666655555544332 4455666666666666665666666
Q ss_pred CCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCCC
Q 040113 349 GNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNS 387 (887)
Q Consensus 349 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~ 387 (887)
..+++|++|++++|++++.+|.. ..+++|+.+++++|+
T Consensus 265 ~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 265 TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 66666666666666666666654 556666666666665
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.7e-38 Score=353.77 Aligned_cols=117 Identities=28% Similarity=0.401 Sum_probs=68.9
Q ss_pred hhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCC
Q 040113 544 LCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKL 623 (887)
Q Consensus 544 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 623 (887)
++.+++|++|++++|++++ +|... .+|++|++++|++++ +|.. .++|++|++++|++++.. . + .++|
T Consensus 233 ~~~l~~L~~L~l~~N~l~~-l~~~~----~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~-~-~--~~~L 299 (454)
T 1jl5_A 233 LQNLPFLTTIYADNNLLKT-LPDLP----PSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLS-E-L--PPNL 299 (454)
T ss_dssp CTTCTTCCEEECCSSCCSS-CCSCC----TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEES-C-C--CTTC
T ss_pred cCCCCCCCEEECCCCcCCc-ccccc----cccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCccc-C-c--CCcC
Confidence 5667778888888887764 44322 267777777777765 3332 356777777777776531 1 1 1466
Q ss_pred cEEeCCCCcCCCCCCccccCC-CCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCc
Q 040113 624 EFLDIGDNQIRDIFPSWLGTL-PNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFT 684 (887)
Q Consensus 624 ~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 684 (887)
++|++++|++++.. .+ ++|++|++++|++++. |. .+++|+.|++++|+++
T Consensus 300 ~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~l-p~-----~~~~L~~L~L~~N~l~ 350 (454)
T 1jl5_A 300 YYLNASSNEIRSLC-----DLPPSLEELNVSNNKLIEL-PA-----LPPRLERLIASFNHLA 350 (454)
T ss_dssp CEEECCSSCCSEEC-----CCCTTCCEEECCSSCCSCC-CC-----CCTTCCEEECCSSCCS
T ss_pred CEEECcCCcCCccc-----CCcCcCCEEECCCCccccc-cc-----cCCcCCEEECCCCccc
Confidence 66667666666531 22 3566666666666542 21 1355666666666554
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.1e-37 Score=351.09 Aligned_cols=377 Identities=22% Similarity=0.214 Sum_probs=236.5
Q ss_pred CCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcc-hhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEE
Q 040113 230 SSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGEL-PVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELD 308 (887)
Q Consensus 230 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 308 (887)
++|++|++++|.+++..|..++++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..++++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 45666666666665555555666666666666666555443 33455556666666666655555555555555555555
Q ss_pred ccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccc-cCCCCCccEEEccCCcCCccCCccccCC--CCCCEEEcCC
Q 040113 309 LSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHAS-IGNLRSLEVLAIGRCNFSGRIPSSLRNL--TQLITLDLSQ 385 (887)
Q Consensus 309 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~l~~l--~~L~~L~L~~ 385 (887)
+++|++++..+....++.+++|++|++++|.+++..|.. +..+++|++|++++|.+.+..+..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 555555543332222444555555555555555444433 4445555555555555544444444333 3344444444
Q ss_pred CCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCcccChhhhcCCcccEEecccCcccCC
Q 040113 386 NSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGK 465 (887)
Q Consensus 386 n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~Ls~n~l~~~ 465 (887)
|.+.+..+.. ... .....+..+++|++|++++|++.+.
T Consensus 190 n~l~~~~~~~--------------------------~~~----------------~~~~~~~~~~~L~~L~Ls~n~l~~~ 227 (455)
T 3v47_A 190 ITLQDMNEYW--------------------------LGW----------------EKCGNPFKNTSITTLDLSGNGFKES 227 (455)
T ss_dssp CBCTTCSTTC--------------------------TTH----------------HHHCCTTTTCEEEEEECTTSCCCHH
T ss_pred Ccccccchhh--------------------------ccc----------------cccccccccceeeeEecCCCccccc
Confidence 4433222111 000 0001122345566666666666655
Q ss_pred CCcccccc-CCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhh
Q 040113 466 IPSWLLDP-STQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWL 544 (887)
Q Consensus 466 ~p~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~ 544 (887)
.|..+... ...+|+.|++++|...+.... .+.+.+..+..+
T Consensus 228 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~ 269 (455)
T 3v47_A 228 MAKRFFDAIAGTKIQSLILSNSYNMGSSFG--------------------------------------HTNFKDPDNFTF 269 (455)
T ss_dssp HHHHHHHHTTTCCEEEEECTTCTTTSCCTT--------------------------------------CCSSCCCCTTTT
T ss_pred chhhhhccccccceeeEeeccccccccccc--------------------------------------hhhhccCccccc
Confidence 55444320 124555555555543332110 011111111112
Q ss_pred h--CcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCC
Q 040113 545 C--KLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSK 622 (887)
Q Consensus 545 ~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 622 (887)
. ..++|+.|++++|.+++..|..+..++ +|++|++++|++++..|..|..+++|++|++++|++++..|..|.++++
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFT-DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred ccccccCceEEEecCccccccchhhcccCC-CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence 2 246899999999999988898888888 7999999999999988889999999999999999999888889999999
Q ss_pred CcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCCh
Q 040113 623 LEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPS 689 (887)
Q Consensus 623 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~ 689 (887)
|++|+|++|++++..|..|..+++|++|++++|++++..+..+ ..+++|+.|++++|++++.+|.
T Consensus 349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCTTT
T ss_pred CCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHh--ccCCcccEEEccCCCcccCCCc
Confidence 9999999999999989999999999999999999998765544 6789999999999999999983
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2e-36 Score=344.36 Aligned_cols=368 Identities=21% Similarity=0.247 Sum_probs=231.2
Q ss_pred CCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCcc-ccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEc
Q 040113 207 NLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRI-QSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDL 285 (887)
Q Consensus 207 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 285 (887)
+|++|++++|.+.+..|..++++++|++|++++|.+.+.+ +..|.++++|++|++++|.+.+..|..|+++++|++|++
T Consensus 31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 110 (455)
T 3v47_A 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL 110 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeC
Confidence 3444444444444444555555555555555555554333 334555555555555555555555555555556666666
Q ss_pred cCCCCCCccchh--hhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCC--CCccEEEccC
Q 040113 286 SINNLSGELPTS--IQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNL--RSLEVLAIGR 361 (887)
Q Consensus 286 ~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~L~~ 361 (887)
++|.+++..+.. ++.+++|++|++++|++++..|.. .++++++|++|++++|.+++..+..+..+ .+|+.|++++
T Consensus 111 ~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS-FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp TTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG-GGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCccccCcccccCcccCCEEECCCCccCccCccc-ccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 666555544433 555566666666666655443432 14455666666666666655555555444 4566666666
Q ss_pred CcCCccCCcc--------ccCCCCCCEEEcCCCCCccccchhhh-hcCCCCCCEEEccCCcccccccccCCCCCCCeeEE
Q 040113 362 CNFSGRIPSS--------LRNLTQLITLDLSQNSYRGTMELDFL-LVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVV 432 (887)
Q Consensus 362 n~i~~~~~~~--------l~~l~~L~~L~L~~n~l~~~~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l 432 (887)
|.+.+..+.. +..+++|++|++++|.+.+..+..+. ....++|+.|++++|......
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-------------- 255 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS-------------- 255 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC--------------
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc--------------
Confidence 6665433322 23456677777777776655543311 111234444444444211100
Q ss_pred eeCCCCCcccChhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCC
Q 040113 433 GLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSS 512 (887)
Q Consensus 433 ~l~~~~l~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~ 512 (887)
+..+.+.+..+..+.....
T Consensus 256 ------------------------~~~~~~~~~~~~~~~~~~~------------------------------------- 274 (455)
T 3v47_A 256 ------------------------FGHTNFKDPDNFTFKGLEA------------------------------------- 274 (455)
T ss_dssp ------------------------TTCCSSCCCCTTTTGGGTT-------------------------------------
T ss_pred ------------------------cchhhhccCcccccccccc-------------------------------------
Confidence 0000010000000000001
Q ss_pred cccccCCCCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCcc
Q 040113 513 NNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNT 592 (887)
Q Consensus 513 n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~ 592 (887)
..++.+++++|.+.+..|..+..+++|++|++++|.+++..|..+..++ +|++|++++|++++..+..
T Consensus 275 -----------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~ 342 (455)
T 3v47_A 275 -----------SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT-HLLKLNLSQNFLGSIDSRM 342 (455)
T ss_dssp -----------SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCEECGGG
T ss_pred -----------cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc-cCCEEECCCCccCCcChhH
Confidence 2334444444445555667788899999999999999988898999988 7999999999999998999
Q ss_pred ccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCC
Q 040113 593 FMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIR 662 (887)
Q Consensus 593 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 662 (887)
|..+++|++|++++|++++..|..|.++++|++|++++|++++..+..+..+++|++|++++|++++..+
T Consensus 343 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 343 FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999999999999999999999999999999999999999999888888999999999999999988755
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.3e-37 Score=346.63 Aligned_cols=378 Identities=23% Similarity=0.282 Sum_probs=191.8
Q ss_pred CCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCc-------------cEEEccCCcCCcc
Q 040113 301 LVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSL-------------EVLAIGRCNFSGR 367 (887)
Q Consensus 301 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-------------~~L~L~~n~i~~~ 367 (887)
.+.|++|++++|.+ +.+|.. ++++++|++|++++|.+.+.+|..++.+++| ++|++++|.+++
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~--i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~- 85 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVE--AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS- 85 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-
T ss_pred cccchhhhcccCch-hhCChh--HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-
Confidence 57888899998888 688877 8888999999999988888888888888776 555555555543
Q ss_pred CCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCcccChhhh
Q 040113 368 IPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLK 447 (887)
Q Consensus 368 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~ 447 (887)
+|.. .++|++|++++|.+++. +. ..++|++|++++|.+.. ++..
T Consensus 86 lp~~---~~~L~~L~l~~n~l~~l-p~-----~~~~L~~L~l~~n~l~~-------------------------l~~~-- 129 (454)
T 1jl5_A 86 LPEL---PPHLESLVASCNSLTEL-PE-----LPQSLKSLLVDNNNLKA-------------------------LSDL-- 129 (454)
T ss_dssp CCSC---CTTCSEEECCSSCCSSC-CC-----CCTTCCEEECCSSCCSC-------------------------CCSC--
T ss_pred CCCC---cCCCCEEEccCCcCCcc-cc-----ccCCCcEEECCCCccCc-------------------------ccCC--
Confidence 2221 24555555555555542 11 12445555555554333 2221
Q ss_pred cCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCc
Q 040113 448 NQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTV 527 (887)
Q Consensus 448 ~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~ 527 (887)
.++|++|++++|++++ +| .+.. +++|++|++++|++++++.. ..+++
T Consensus 130 -~~~L~~L~L~~n~l~~-lp-~~~~--l~~L~~L~l~~N~l~~lp~~----------------------------~~~L~ 176 (454)
T 1jl5_A 130 -PPLLEYLGVSNNQLEK-LP-ELQN--SSFLKIIDVDNNSLKKLPDL----------------------------PPSLE 176 (454)
T ss_dssp -CTTCCEEECCSSCCSS-CC-CCTT--CTTCCEEECCSSCCSCCCCC----------------------------CTTCC
T ss_pred -CCCCCEEECcCCCCCC-Cc-ccCC--CCCCCEEECCCCcCcccCCC----------------------------ccccc
Confidence 1345555555555553 34 2332 45555555555554443221 12333
Q ss_pred EEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCC
Q 040113 528 NYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHN 607 (887)
Q Consensus 528 ~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 607 (887)
++++++|++.+ +| .++.+++|++|++++|.+++ +|... .+|++|++++|+++ .+| .+..+++|++|++++|
T Consensus 177 ~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~----~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 177 FIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP----LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNN 247 (454)
T ss_dssp EEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC----TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSS
T ss_pred EEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc----CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCC
Confidence 33333333333 33 35667777777777777764 33322 25777777777776 445 3667777777777777
Q ss_pred eeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccC
Q 040113 608 LFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKL 687 (887)
Q Consensus 608 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~i 687 (887)
++++ +|.. .++|++|++++|++++. |.. .++|++|++++|++++... ..++|+.|++++|++++ +
T Consensus 248 ~l~~-l~~~---~~~L~~L~l~~N~l~~l-~~~---~~~L~~L~ls~N~l~~l~~------~~~~L~~L~l~~N~l~~-i 312 (454)
T 1jl5_A 248 LLKT-LPDL---PPSLEALNVRDNYLTDL-PEL---PQSLTFLDVSENIFSGLSE------LPPNLYYLNASSNEIRS-L 312 (454)
T ss_dssp CCSS-CCSC---CTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSEESC------CCTTCCEEECCSSCCSE-E
T ss_pred cCCc-cccc---ccccCEEECCCCccccc-Ccc---cCcCCEEECcCCccCcccC------cCCcCCEEECcCCcCCc-c
Confidence 7764 3332 35677777777777663 332 3667777777777766321 12567777777776653 1
Q ss_pred ChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhh
Q 040113 688 PSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSI 767 (887)
Q Consensus 688 p~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l 767 (887)
+. .++.|+.|++++|++++ +|..
T Consensus 313 ~~-------------------------------------------------------~~~~L~~L~Ls~N~l~~-lp~~- 335 (454)
T 1jl5_A 313 CD-------------------------------------------------------LPPSLEELNVSNNKLIE-LPAL- 335 (454)
T ss_dssp CC-------------------------------------------------------CCTTCCEEECCSSCCSC-CCCC-
T ss_pred cC-------------------------------------------------------CcCcCCEEECCCCcccc-cccc-
Confidence 10 13356677777777765 4443
Q ss_pred hcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccc--cCCccccCC-------------CCCCeeecccCccc
Q 040113 768 ANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLG--QIPQQLVEL-------------TFLEFFNVSDNYLT 832 (887)
Q Consensus 768 ~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~--~~p~~l~~L-------------~~L~~L~ls~N~l~ 832 (887)
+++|++|++++|+++ .+|. .+++|++|++++|++++ .+|.++..+ ++|++|++++|+++
T Consensus 336 --~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 336 --PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp --CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred --CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 466777777777776 3554 35667777777777776 566666666 78999999999999
Q ss_pred c--cCCCC
Q 040113 833 G--PIPQG 838 (887)
Q Consensus 833 g--~iP~~ 838 (887)
| .+|..
T Consensus 410 ~~~~iP~s 417 (454)
T 1jl5_A 410 EFPDIPES 417 (454)
T ss_dssp --------
T ss_pred ccccchhh
Confidence 8 78854
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=9e-36 Score=336.15 Aligned_cols=363 Identities=21% Similarity=0.179 Sum_probs=230.6
Q ss_pred HhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCC
Q 040113 201 LVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSL 280 (887)
Q Consensus 201 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 280 (887)
.++++++|++|++++|.+++. | .++.+++|++|++++|.+++. + ++.+++|++|++++|.+++. + ++++++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L 108 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKL 108 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence 455566666666666666653 3 466666666666666666653 2 56666666666666666543 2 5666666
Q ss_pred CEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEcc
Q 040113 281 KKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIG 360 (887)
Q Consensus 281 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 360 (887)
++|++++|.+++. + ++.+++|++|++++|++++ ++ ++.+++|++|++++|...+.+ .++.+++|++|+++
T Consensus 109 ~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~----l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 109 TYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID----VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS 178 (457)
T ss_dssp CEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC----CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC
T ss_pred CEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec----cccCCcCCEEECCCCCccccc--ccccCCcCCEEECC
Confidence 6666666666642 2 5566666666666666654 22 455666666666666444333 34555566666666
Q ss_pred CCcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCc
Q 040113 361 RCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLI 440 (887)
Q Consensus 361 ~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~ 440 (887)
+|++++ +| +..+++|++|++++|.+++.. +..+++|+.|++++|.+ .
T Consensus 179 ~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~~-----l~~l~~L~~L~Ls~N~l-------------------------~ 225 (457)
T 3bz5_A 179 FNKITE-LD--VSQNKLLNRLNCDTNNITKLD-----LNQNIQLTFLDCSSNKL-------------------------T 225 (457)
T ss_dssp SSCCCC-CC--CTTCTTCCEEECCSSCCSCCC-----CTTCTTCSEEECCSSCC-------------------------S
T ss_pred CCccce-ec--cccCCCCCEEECcCCcCCeec-----cccCCCCCEEECcCCcc-------------------------c
Confidence 665554 22 455555555555555555431 34444444444444432 2
Q ss_pred ccChhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCC
Q 040113 441 EFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLP 520 (887)
Q Consensus 441 ~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~ 520 (887)
.+| +..+++|+.|++++|++++..+. .+++|+.|++++|.
T Consensus 226 ~ip--~~~l~~L~~L~l~~N~l~~~~~~-----~l~~L~~L~l~~n~--------------------------------- 265 (457)
T 3bz5_A 226 EID--VTPLTQLTYFDCSVNPLTELDVS-----TLSKLTTLHCIQTD--------------------------------- 265 (457)
T ss_dssp CCC--CTTCTTCSEEECCSSCCSCCCCT-----TCTTCCEEECTTCC---------------------------------
T ss_pred ccC--ccccCCCCEEEeeCCcCCCcCHH-----HCCCCCEEeccCCC---------------------------------
Confidence 333 44555666666666666553221 14455555554432
Q ss_pred CCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCccc
Q 040113 521 VPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLG 600 (887)
Q Consensus 521 ~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 600 (887)
++.+++++|.+.+.+| ++.+++|+.|++++|...+.+|... . +|+.|++++| ++|+
T Consensus 266 -----L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~---~-~L~~L~l~~~-------------~~L~ 321 (457)
T 3bz5_A 266 -----LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQA---A-GITELDLSQN-------------PKLV 321 (457)
T ss_dssp -----CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTT---C-CCSCCCCTTC-------------TTCC
T ss_pred -----CCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCC---C-cceEechhhc-------------ccCC
Confidence 2334455555556665 4578899999999998888777532 3 5777776665 5899
Q ss_pred EEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCC
Q 040113 601 MIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSN 680 (887)
Q Consensus 601 ~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~ 680 (887)
+|++++|++++. + +.++++|+.|++++|++++. +.|..|++++|.+.|. ..+..|..+++++
T Consensus 322 ~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~l--------~~L~~L~l~~n~l~g~-------~~~~~l~~l~l~~ 383 (457)
T 3bz5_A 322 YLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQDF--------SSVGKIPALNNNFEAE-------GQTITMPKETLTN 383 (457)
T ss_dssp EEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCBC--------TTGGGSSGGGTSEEEE-------EEEEECCCBCCBT
T ss_pred EEECCCCccccc-c--cccCCcCcEEECCCCCCCCc--------cccccccccCCcEEec-------ceeeecCcccccc
Confidence 999999999985 3 88999999999999999873 5677778999999886 3456788899999
Q ss_pred CcCcccCChhhhhccc
Q 040113 681 NRFTGKLPSKSFLCWN 696 (887)
Q Consensus 681 N~l~~~ip~~~~~~~~ 696 (887)
|+++|.+|...+....
T Consensus 384 N~l~g~ip~~~~~~~~ 399 (457)
T 3bz5_A 384 NSLTIAVSPDLLDQFG 399 (457)
T ss_dssp TBEEEECCTTCBCTTS
T ss_pred CcEEEEcChhHhcccC
Confidence 9999999987554433
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.3e-34 Score=326.76 Aligned_cols=210 Identities=21% Similarity=0.245 Sum_probs=119.2
Q ss_pred ccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHH
Q 040113 122 SLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANL 201 (887)
Q Consensus 122 ~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~ 201 (887)
.++++++|++|++++|.+++ +| .++.+++|++|++++|.+.+ +| ++.+++|++|++++|.+..++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~~--------- 101 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNLD--------- 101 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---------
T ss_pred ChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCceee---------
Confidence 66778888888888888875 34 57788888888888888765 34 677777777777777643321
Q ss_pred hhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCC
Q 040113 202 VEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLK 281 (887)
Q Consensus 202 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 281 (887)
++.+++|++|++++|.+++. + ++.+++|++|++++|.+++. .++.+++|++|++++|...+.+ .++.+++|+
T Consensus 102 ~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~ 173 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLT 173 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence 45566666666666666553 2 55556666666666665542 2455555555555555433333 244555555
Q ss_pred EEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccC
Q 040113 282 KLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGR 361 (887)
Q Consensus 282 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 361 (887)
+|++++|.+++ +| ++.+++|++|++++|++++. + ++.+++|+.|++++|++++ +| ++.+++|++|++++
T Consensus 174 ~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~-~----l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 174 TLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL-D----LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSV 242 (457)
T ss_dssp EEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC-C----CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCS
T ss_pred EEECCCCccce-ec--cccCCCCCEEECcCCcCCee-c----cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeC
Confidence 55555555543 22 44445555555555544432 1 3344444444444444443 22 33444444444444
Q ss_pred CcCC
Q 040113 362 CNFS 365 (887)
Q Consensus 362 n~i~ 365 (887)
|+++
T Consensus 243 N~l~ 246 (457)
T 3bz5_A 243 NPLT 246 (457)
T ss_dssp SCCS
T ss_pred CcCC
Confidence 4443
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.7e-33 Score=318.78 Aligned_cols=127 Identities=32% Similarity=0.446 Sum_probs=61.0
Q ss_pred hCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCc
Q 040113 545 CKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLE 624 (887)
Q Consensus 545 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~ 624 (887)
..+++|++|++++|.+++..| ++.++ +|+.|++++|++++. ..+..+++|+.|++++|.+++..+ +..+++|+
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 268 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDITP--LGILT-NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLT 268 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GGGCT-TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCS
T ss_pred ccCCCCCEEEecCCccccccc--ccccC-CCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCC
Confidence 344555555555555554433 33333 455555555555432 234445555555555555554333 44555555
Q ss_pred EEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCc
Q 040113 625 FLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFT 684 (887)
Q Consensus 625 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 684 (887)
+|++++|++++..+ +..+++|++|++++|++.+..+ ...+++|+.|++++|+++
T Consensus 269 ~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~L~~n~l~ 322 (466)
T 1o6v_A 269 ELKLGANQISNISP--LAGLTALTNLELNENQLEDISP----ISNLKNLTYLTLYFNNIS 322 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG----GGGCTTCSEEECCSSCCS
T ss_pred EEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh----hcCCCCCCEEECcCCcCC
Confidence 55555555554422 4445555555555555444322 133444444444444443
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=9.1e-33 Score=314.41 Aligned_cols=106 Identities=28% Similarity=0.408 Sum_probs=59.3
Q ss_pred hCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCc
Q 040113 545 CKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLE 624 (887)
Q Consensus 545 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~ 624 (887)
..+++|+.|++++|++++..+ +..++ +|+.|++++|++++..| +..+++|+.|++++|++++. ..+.++++|+
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~~--~~~l~-~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 356 (466)
T 1o6v_A 284 AGLTALTNLELNENQLEDISP--ISNLK-NLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNIN 356 (466)
T ss_dssp TTCTTCSEEECCSSCCSCCGG--GGGCT-TCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCC
T ss_pred cCCCccCeEEcCCCcccCchh--hcCCC-CCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCC
Confidence 345556666666665554333 44444 45566666665555443 44555666666666655543 3455566666
Q ss_pred EEeCCCCcCCCCCCccccCCCCCCEEEccCCcccc
Q 040113 625 FLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYG 659 (887)
Q Consensus 625 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 659 (887)
.|++++|++++..| +..+++|+.|++++|++++
T Consensus 357 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 357 WLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp EEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred EEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 66666666665544 5556666666666666555
No 34
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.1e-34 Score=306.92 Aligned_cols=260 Identities=33% Similarity=0.513 Sum_probs=217.0
Q ss_pred CCCCeEEcCCCccCC--CCCCcccccCCcceEEecCC-CcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCc
Q 040113 548 DSLEILVLSHNNLSG--LLPRCLGSFSDKLSILDLRA-NNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLE 624 (887)
Q Consensus 548 ~~L~~L~Ls~n~l~~--~~p~~l~~l~~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~ 624 (887)
.+++.|++++|.+++ .+|..+..++ +|++|++++ |++.+.+|..|..+++|++|++++|++++.+|..|.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 467777777777777 6777777777 677777774 777777777777777888888888888777777777788888
Q ss_pred EEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCC-CCCEEEcCCCcCcccCChhhhhccccchhccc
Q 040113 625 FLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFS-KLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNT 703 (887)
Q Consensus 625 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~ 703 (887)
+|++++|++++.+|..+..+++|++|++++|++++.+|..+ ..++ +|+.|++++|++++.+|... ..
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~~L~~L~L~~N~l~~~~~~~~-~~--------- 196 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPTF-AN--------- 196 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GCCCTTCCEEECCSSEEEEECCGGG-GG---------
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH--hhhhhcCcEEECcCCeeeccCChHH-hC---------
Confidence 88888888877777778888888888888888877766655 5566 88888888888887777541 10
Q ss_pred CCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcc
Q 040113 704 SDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNL 783 (887)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l 783 (887)
.. |+.|++++|.+++.+|..++.+++|++|+|++|.+
T Consensus 197 ------------------------------------------l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 197 ------------------------------------------LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp ------------------------------------------CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred ------------------------------------------Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence 22 88999999999999999999999999999999999
Q ss_pred cccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccccCCCCCcCccccccccCCCcCCCCCCCCCC
Q 040113 784 QGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFESNSGLCGRPLSRE 863 (887)
Q Consensus 784 ~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~n~~lcg~~~~~~ 863 (887)
++.+|. +..+++|++|+|++|++++.+|..+..+++|++|++++|+++|.+|...++..+....+.||+++||.|+. .
T Consensus 234 ~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~ 311 (313)
T 1ogq_A 234 AFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-A 311 (313)
T ss_dssp CCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-C
T ss_pred eeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-C
Confidence 988777 88999999999999999999999999999999999999999999999988888999999999999999876 5
Q ss_pred CC
Q 040113 864 CE 865 (887)
Q Consensus 864 c~ 865 (887)
|.
T Consensus 312 C~ 313 (313)
T 1ogq_A 312 CT 313 (313)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=322.51 Aligned_cols=344 Identities=19% Similarity=0.156 Sum_probs=242.7
Q ss_pred eeCCCCCcccChhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCC
Q 040113 433 GLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSS 512 (887)
Q Consensus 433 ~l~~~~l~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~ 512 (887)
+.++..+..+|..+. +.++.|++++|.+++..+..+.. +++|++|++++|.++.+.+..+ ...+.|++|++++
T Consensus 17 ~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~i~~~~~~~~---~~l~~L~~L~L~~ 89 (477)
T 2id5_A 17 LCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFAS--FPHLEELELNENIVSAVEPGAF---NNLFNLRTLGLRS 89 (477)
T ss_dssp ECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTT--CTTCCEEECTTSCCCEECTTTT---TTCTTCCEEECCS
T ss_pred EeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccC--CCCCCEEECCCCccCEeChhhh---hCCccCCEEECCC
Confidence 333334444444332 34555555555555554444443 5555555555555554433221 1112233333333
Q ss_pred cccccCCCCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCcc
Q 040113 513 NNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNT 592 (887)
Q Consensus 513 n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~ 592 (887)
|.+ .+..+..|.++++|++|++++|.+.+..|..+..++ +|++|++++|++++..+..
T Consensus 90 n~l---------------------~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~ 147 (477)
T 2id5_A 90 NRL---------------------KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY-NLKSLEVGDNDLVYISHRA 147 (477)
T ss_dssp SCC---------------------CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEEECCTTCCEECTTS
T ss_pred CcC---------------------CccCcccccCCCCCCEEECCCCccccCChhHccccc-cCCEEECCCCccceeChhh
Confidence 332 223334466778888888888888877788888887 6888888888888888888
Q ss_pred ccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCC
Q 040113 593 FMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSK 672 (887)
Q Consensus 593 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~ 672 (887)
|..+++|+.|++++|++++..+..+.++++|+.|++++|++.+..+..|..+++|+.|++++|++.+.++... ....+
T Consensus 148 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~ 225 (477)
T 2id5_A 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC--LYGLN 225 (477)
T ss_dssp STTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT--TTTCC
T ss_pred ccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc--ccCcc
Confidence 8888888888888888887766778888888888888888888877788888888888888888777766554 33458
Q ss_pred CCEEEcCCCcCcccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEE
Q 040113 673 LRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSI 752 (887)
Q Consensus 673 L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 752 (887)
|+.|++++|+++ .+|...+.. .+.|+.|
T Consensus 226 L~~L~l~~n~l~-~~~~~~~~~---------------------------------------------------l~~L~~L 253 (477)
T 2id5_A 226 LTSLSITHCNLT-AVPYLAVRH---------------------------------------------------LVYLRFL 253 (477)
T ss_dssp CSEEEEESSCCC-SCCHHHHTT---------------------------------------------------CTTCCEE
T ss_pred ccEEECcCCccc-ccCHHHhcC---------------------------------------------------ccccCee
Confidence 888888888887 556443322 4568899
Q ss_pred EeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCccc
Q 040113 753 ILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLT 832 (887)
Q Consensus 753 ~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~ 832 (887)
+|++|.+++..+..+..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|++|++++|+++
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp ECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 99999999888888999999999999999999999999999999999999999999888888899999999999999998
Q ss_pred ccCCCCCcCccccccccCCCcCCCCCC
Q 040113 833 GPIPQGRQFATFDNSSFESNSGLCGRP 859 (887)
Q Consensus 833 g~iP~~~~~~~~~~~~~~~n~~lcg~~ 859 (887)
+.-+..-.+.......+.++...|+.|
T Consensus 334 c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 334 CDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp CSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred CccchHhHHhhhhccccCccCceeCCc
Confidence 643311001111223455666666443
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.8e-32 Score=308.25 Aligned_cols=323 Identities=19% Similarity=0.202 Sum_probs=265.3
Q ss_pred cEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCcEEEcc
Q 040113 453 MLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVS 532 (887)
Q Consensus 453 ~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~ 532 (887)
+.++.+++.++ .+|..+ .+.++.|++++|.++.+.+..+. ..+++++|+++
T Consensus 14 ~~v~c~~~~l~-~ip~~~----~~~l~~L~L~~n~l~~~~~~~~~------------------------~l~~L~~L~L~ 64 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI----PTETRLLDLGKNRIKTLNQDEFA------------------------SFPHLEELELN 64 (477)
T ss_dssp TEEECCSCCCS-SCCSCC----CTTCSEEECCSSCCCEECTTTTT------------------------TCTTCCEEECT
T ss_pred CEEEeCCCCcC-cCCCCC----CCCCcEEECCCCccceECHhHcc------------------------CCCCCCEEECC
Confidence 45666666665 445443 34666677776666655433221 13456666666
Q ss_pred CccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeee
Q 040113 533 NNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGR 612 (887)
Q Consensus 533 ~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 612 (887)
+|.+.+..|..|.++++|++|+|++|.+++..+..|.+++ +|++|++++|++++..+..|..+++|++|++++|.+++.
T Consensus 65 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 143 (477)
T 2id5_A 65 ENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS-NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI 143 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE
T ss_pred CCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCC-CCCEEECCCCccccCChhHccccccCCEEECCCCcccee
Confidence 6666677788899999999999999999977777788888 799999999999999999999999999999999999999
Q ss_pred CCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhh
Q 040113 613 IPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSF 692 (887)
Q Consensus 613 ~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~ 692 (887)
.+..|.++++|++|++++|++++..+..+..+++|+.|++++|.+.+..+..+ ..+++|+.|++++|++.+.+|...+
T Consensus 144 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~ 221 (477)
T 2id5_A 144 SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF--KRLYRLKVLEISHWPYLDTMTPNCL 221 (477)
T ss_dssp CTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCS--CSCTTCCEEEEECCTTCCEECTTTT
T ss_pred ChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhc--ccCcccceeeCCCCccccccCcccc
Confidence 89999999999999999999999888889999999999999999998866555 7789999999999988877775421
Q ss_pred hccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccC
Q 040113 693 LCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKG 772 (887)
Q Consensus 693 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~ 772 (887)
. ...|+.|+|++|++++..+..+..+++
T Consensus 222 ~----------------------------------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~ 249 (477)
T 2id5_A 222 Y----------------------------------------------------GLNLTSLSITHCNLTAVPYLAVRHLVY 249 (477)
T ss_dssp T----------------------------------------------------TCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred c----------------------------------------------------CccccEEECcCCcccccCHHHhcCccc
Confidence 1 236899999999999776678999999
Q ss_pred CCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccccCCCC-CcCccccccccCC
Q 040113 773 LQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQG-RQFATFDNSSFES 851 (887)
Q Consensus 773 L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~~ 851 (887)
|+.|+|++|.+++..+..|.++++|+.|+|++|++++..|..+..+++|++|++++|++++..|.. ..+..+....+.+
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCS
T ss_pred cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccC
Confidence 999999999999999999999999999999999999999999999999999999999999754432 2334455667788
Q ss_pred CcCCCCCC
Q 040113 852 NSGLCGRP 859 (887)
Q Consensus 852 n~~lcg~~ 859 (887)
|+..|+++
T Consensus 330 N~l~c~c~ 337 (477)
T 2id5_A 330 NPLACDCR 337 (477)
T ss_dssp SCEECSGG
T ss_pred CCccCccc
Confidence 88888754
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.9e-31 Score=296.40 Aligned_cols=350 Identities=19% Similarity=0.152 Sum_probs=192.4
Q ss_pred CCCCCCCCCCCCCc-cccceEecCCCCcEEEEEcCCCcccccccCCcccccCCCCCeEECCCCCCCCCCCCcc-ccCCCC
Q 040113 76 AASWKPEEGNIDCC-SWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSE-IINLSR 153 (887)
Q Consensus 76 ~~~w~~~~~~~~~c-~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~-~~~l~~ 153 (887)
+++|.. +.+|| .|.+..|... .+.+........... .-..++++++|+++++.++. +|.. +..+++
T Consensus 3 ~~~~~~---~~~C~~~~~~~~c~~~-----~~~i~~~~~~~~~~~--~~~~l~~l~~l~l~~~~l~~--l~~~~~~~l~~ 70 (390)
T 3o6n_A 3 VKPRQP---EYKCIDSNLQYDCVFY-----DVHIDMQTQDVYFGF--EDITLNNQKIVTFKNSTMRK--LPAALLDSFRQ 70 (390)
T ss_dssp ----CC---EECBCC------EEEE-----SCEECSSCCCCEESC--SSGGGCCCSEEEEESCEESE--ECTHHHHHCCC
T ss_pred cCCCCC---ccceehhhhhhcccee-----eeeeecccccccccc--cccccCCceEEEecCCchhh--CChhHhccccc
Confidence 567876 56666 4666666321 112222111111111 33456788888888888775 4443 677888
Q ss_pred CCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCC
Q 040113 154 LSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLT 233 (887)
Q Consensus 154 L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 233 (887)
|++|++++|.+.+..+..+..+++|++|++++|.+..+. +..++.+++|++|++++|.+....+..+..+++|+
T Consensus 71 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 144 (390)
T 3o6n_A 71 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP------PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 144 (390)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCC------HHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence 888888888887666667777777777777777643332 33455666666666666666544444455566666
Q ss_pred EEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCc
Q 040113 234 FLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNK 313 (887)
Q Consensus 234 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 313 (887)
+|++++|.+.+..+..+..+++|++|++++|.+++. .++.+++|+.|++++|.+++ +...++|++|++++|.
T Consensus 145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~ 216 (390)
T 3o6n_A 145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNS 216 (390)
T ss_dssp EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSC
T ss_pred EEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECCCCe
Confidence 666666666555555555566666666666655432 23344555555555555542 1223355555555555
Q ss_pred CCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCCCCccccc
Q 040113 314 LSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTME 393 (887)
Q Consensus 314 l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 393 (887)
+.. ++. ...++|+.|++++|.+++. ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++...
T Consensus 217 l~~-~~~----~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 289 (390)
T 3o6n_A 217 INV-VRG----PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL 289 (390)
T ss_dssp CCE-EEC----CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEEC
T ss_pred eee-ccc----cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCc
Confidence 542 221 1234555555555555432 334445555555555555554444445555555555555554443211
Q ss_pred hhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCcccChhhhcCCcccEEecccCcccCCCCcccccc
Q 040113 394 LDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDP 473 (887)
Q Consensus 394 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~ 473 (887)
. ... +++|+.+++++|.+..+|..+..+++|+.|++++|++++. + +..
T Consensus 290 -~--~~~-------------------------l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~- 337 (390)
T 3o6n_A 290 -Y--GQP-------------------------IPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL-K--LST- 337 (390)
T ss_dssp -S--SSC-------------------------CTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC-C--CCT-
T ss_pred -c--cCC-------------------------CCCCCEEECCCCcceecCccccccCcCCEEECCCCcccee-C--chh-
Confidence 1 223 4455555555555556667777888888888888888754 2 222
Q ss_pred CCCCCcEEEccCCcccCc
Q 040113 474 STQNLSALNLSHNLLTGF 491 (887)
Q Consensus 474 ~~~~L~~L~Ls~n~l~~~ 491 (887)
+++|+.|++++|++...
T Consensus 338 -~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 338 -HHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp -TCCCSEEECCSSCEEHH
T ss_pred -hccCCEEEcCCCCccch
Confidence 67888888888877653
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=2.1e-30 Score=303.97 Aligned_cols=313 Identities=19% Similarity=0.143 Sum_probs=188.6
Q ss_pred ccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhh
Q 040113 124 FKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVE 203 (887)
Q Consensus 124 ~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~ 203 (887)
..+.+++.|++++|.+... .+..++.+++|++|+|++|.+.+..|..++.+++|++|++++|.+..+. +..++
T Consensus 48 l~l~~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~ 120 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP------PHVFQ 120 (597)
T ss_dssp GGGCCCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC------TTTTT
T ss_pred ccCCCceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCC------HHHHc
Confidence 3467788888888887753 2334677888888888888887776677777777777777777644332 34456
Q ss_pred cCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEE
Q 040113 204 KLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKL 283 (887)
Q Consensus 204 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 283 (887)
.+++|++|++++|.+.+..+..|+.+++|++|++++|.+.+..|..+..+++|++|++++|.+++. .++.+++|+.|
T Consensus 121 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L 197 (597)
T 3oja_B 121 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHA 197 (597)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEE
T ss_pred CCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---Chhhhhhhhhh
Confidence 666666666666666655444456666666666666666655555566666666666666665543 13345556666
Q ss_pred EccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCc
Q 040113 284 DLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCN 363 (887)
Q Consensus 284 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 363 (887)
++++|.+.+ +...++|++|++++|.+... +.. ..++|+.|++++|.+++ +..+..+++|++|++++|.
T Consensus 198 ~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~-~~~----~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~ 265 (597)
T 3oja_B 198 NVSYNLLST-----LAIPIAVEELDASHNSINVV-RGP----VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNE 265 (597)
T ss_dssp ECCSSCCSE-----EECCTTCSEEECCSSCCCEE-ECS----CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSC
T ss_pred hcccCcccc-----ccCCchhheeeccCCccccc-ccc----cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCc
Confidence 666665542 22334556666665555422 211 12455555555555553 2445555555555555555
Q ss_pred CCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCcccC
Q 040113 364 FSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFP 443 (887)
Q Consensus 364 i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~ 443 (887)
+.+..|..+..+++|++|++++|.+.+... . ... +++|+.|++++|.+..+|
T Consensus 266 l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~--~~~-------------------------l~~L~~L~Ls~N~l~~i~ 317 (597)
T 3oja_B 266 LEKIMYHPFVKMQRLERLYISNNRLVALNL-Y--GQP-------------------------IPTLKVLDLSHNHLLHVE 317 (597)
T ss_dssp CCEEESGGGTTCSSCCEEECTTSCCCEEEC-S--SSC-------------------------CTTCCEEECCSSCCCCCG
T ss_pred cCCCCHHHhcCccCCCEEECCCCCCCCCCc-c--ccc-------------------------CCCCcEEECCCCCCCccC
Confidence 555555555555555555555555544221 1 233 344555555555555667
Q ss_pred hhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCc
Q 040113 444 NFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGF 491 (887)
Q Consensus 444 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~ 491 (887)
..+..+++|+.|++++|.+.+.. +. .+++|+.|++++|.+.+.
T Consensus 318 ~~~~~l~~L~~L~L~~N~l~~~~---~~--~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 318 RNQPQFDRLENLYLDHNSIVTLK---LS--THHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp GGHHHHTTCSEEECCSSCCCCCC---CC--TTCCCSEEECCSSCEEHH
T ss_pred cccccCCCCCEEECCCCCCCCcC---hh--hcCCCCEEEeeCCCCCCh
Confidence 77788888888888888887543 22 267788888888877643
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.2e-29 Score=277.49 Aligned_cols=306 Identities=27% Similarity=0.347 Sum_probs=156.2
Q ss_pred ccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhh
Q 040113 124 FKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVE 203 (887)
Q Consensus 124 ~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~ 203 (887)
..+++|++|+++++.+.. +| .++.+++|++|++++|.+.+ +|. +..+++|++|++++|.+..+ ..+.
T Consensus 41 ~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~--------~~~~ 107 (347)
T 4fmz_A 41 EELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDI--------SALQ 107 (347)
T ss_dssp HHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC--------GGGT
T ss_pred hhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCc--------hHHc
Confidence 345555555555555543 22 25555566666666555543 222 55555555555555553322 1245
Q ss_pred cCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEE
Q 040113 204 KLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKL 283 (887)
Q Consensus 204 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 283 (887)
.+++|++|++++|.+.+..+ +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 108 ~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L 182 (347)
T 4fmz_A 108 NLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSL 182 (347)
T ss_dssp TCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEE
T ss_pred CCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEE
Confidence 55555555555555544322 5555555555555554333222 25555556666666555543322 5555556666
Q ss_pred EccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCc
Q 040113 284 DLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCN 363 (887)
Q Consensus 284 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 363 (887)
++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.
T Consensus 183 ~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 254 (347)
T 4fmz_A 183 SLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQ 254 (347)
T ss_dssp ECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EccCCccccccc--ccCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCc
Confidence 666555553322 5555556666666555553222 4455555556655555553322 5555555555555555
Q ss_pred CCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCcccC
Q 040113 364 FSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFP 443 (887)
Q Consensus 364 i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~ 443 (887)
+++. ..+..+++|++|++++|.+.+.. .+..+++|+.|++++|.+... .+
T Consensus 255 l~~~--~~~~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~L~~n~l~~~------------------------~~ 304 (347)
T 4fmz_A 255 ISDI--NAVKDLTKLKMLNVGSNQISDIS----VLNNLSQLNSLFLNNNQLGNE------------------------DM 304 (347)
T ss_dssp CCCC--GGGTTCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCGG------------------------GH
T ss_pred cCCC--hhHhcCCCcCEEEccCCccCCCh----hhcCCCCCCEEECcCCcCCCc------------------------Ch
Confidence 5432 33455555555555555554431 134445555555555433222 23
Q ss_pred hhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCccc
Q 040113 444 NFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLT 489 (887)
Q Consensus 444 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~ 489 (887)
..+..+++|++|++++|++++..| +.. +++|++|++++|.++
T Consensus 305 ~~l~~l~~L~~L~L~~n~l~~~~~--~~~--l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 305 EVIGGLTNLTTLFLSQNHITDIRP--LAS--LSKMDSADFANQVIK 346 (347)
T ss_dssp HHHHTCTTCSEEECCSSSCCCCGG--GGG--CTTCSEESSSCC---
T ss_pred hHhhccccCCEEEccCCccccccC--hhh--hhccceeehhhhccc
Confidence 445556666666666666665544 222 566666666666543
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=2e-30 Score=288.24 Aligned_cols=318 Identities=19% Similarity=0.177 Sum_probs=197.6
Q ss_pred CCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccE
Q 040113 253 LSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQS 332 (887)
Q Consensus 253 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~ 332 (887)
++++++|++++|.+....+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+++..|.. ++++++|++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV--FQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHH--hcCCCCCCE
Confidence 466777777777665433334566777777777777776555556667777777777777766554544 566666777
Q ss_pred EEccCCCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCC
Q 040113 333 LDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSN 412 (887)
Q Consensus 333 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n 412 (887)
|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.. +..+++|+.|++++|
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-----LSLIPSLFHANVSYN 196 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC-----GGGCTTCSEEECCSS
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc-----cccccccceeecccc
Confidence 777776666433334566666666666666666555555666666666666666655431 233344444444444
Q ss_pred cccccccccCCCCCCCeeEEeeCCCCCcccChhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCcc
Q 040113 413 WLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFD 492 (887)
Q Consensus 413 ~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~ 492 (887)
.+++. .. .++|+.|++++|.++.++
T Consensus 197 ------------------------------------------------~l~~~-----~~--~~~L~~L~l~~n~l~~~~ 221 (390)
T 3o6n_A 197 ------------------------------------------------LLSTL-----AI--PIAVEELDASHNSINVVR 221 (390)
T ss_dssp ------------------------------------------------CCSEE-----EC--CSSCSEEECCSSCCCEEE
T ss_pred ------------------------------------------------ccccc-----CC--CCcceEEECCCCeeeecc
Confidence 32211 00 223444444444433221
Q ss_pred ccccccCCccccccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccC
Q 040113 493 QQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFS 572 (887)
Q Consensus 493 ~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 572 (887)
.. ..++|+.|++++|.+++. ..+..++
T Consensus 222 ~~---------------------------------------------------~~~~L~~L~l~~n~l~~~--~~l~~l~ 248 (390)
T 3o6n_A 222 GP---------------------------------------------------VNVELTILKLQHNNLTDT--AWLLNYP 248 (390)
T ss_dssp CC---------------------------------------------------CCSSCCEEECCSSCCCCC--GGGGGCT
T ss_pred cc---------------------------------------------------ccccccEEECCCCCCccc--HHHcCCC
Confidence 10 124566666666666543 3455555
Q ss_pred CcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEc
Q 040113 573 DKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLIL 652 (887)
Q Consensus 573 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 652 (887)
+|++|++++|++++..|..|..+++|++|++++|++++. |..+..+++|++|++++|++.+. |..+..+++|++|++
T Consensus 249 -~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L 325 (390)
T 3o6n_A 249 -GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYL 325 (390)
T ss_dssp -TCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEEC
T ss_pred -CccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcceec-CccccccCcCCEEEC
Confidence 577777777777777777777777777778877777753 45556778888888888888754 556777888888888
Q ss_pred cCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhh
Q 040113 653 QSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFL 693 (887)
Q Consensus 653 ~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~ 693 (887)
++|+++... ...+++|+.|++++|++.+.....++.
T Consensus 326 ~~N~i~~~~-----~~~~~~L~~L~l~~N~~~~~~~~~~~~ 361 (390)
T 3o6n_A 326 DHNSIVTLK-----LSTHHTLKNLTLSHNDWDCNSLRALFR 361 (390)
T ss_dssp CSSCCCCCC-----CCTTCCCSEEECCSSCEEHHHHHHHTT
T ss_pred CCCccceeC-----chhhccCCEEEcCCCCccchhHHHHHH
Confidence 888887652 245788889999999888654444333
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1.6e-31 Score=288.50 Aligned_cols=273 Identities=21% Similarity=0.257 Sum_probs=174.2
Q ss_pred CCCHHHHHHHHHhhhcCCCCCCcccccccCCCCCCCCCCCCCCCCC-CCCCCCccccceEecC--------CCCcEEEEE
Q 040113 37 LCHDDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKPE-EGNIDCCSWDGVECSE--------NTGHVMKLD 107 (887)
Q Consensus 37 ~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~-~~~~~~c~w~gv~c~~--------~~~~v~~L~ 107 (887)
.+..+|++||++||+++..++. ....+|... ....++|.|.|+.|+. ...+|+.|+
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~---------------~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~ 87 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRN---------------RWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALE 87 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCT---------------THHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEE
T ss_pred ccCchHHHHHHHHHHhccCCch---------------hhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEE
Confidence 3456899999999998854432 245678310 0157889999999952 235677777
Q ss_pred cCCCcccccccCCcccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCC
Q 040113 108 LSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNS 187 (887)
Q Consensus 108 L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~ 187 (887)
|+++.+. .++. .++++++|++|+|++|.++ .+|..++++++|++|+|++|.+. .+|..++++++|++|++++|.
T Consensus 88 L~~n~l~-~lp~--~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~ 161 (328)
T 4fcg_A 88 LRSVPLP-QFPD--QAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACP 161 (328)
T ss_dssp EESSCCS-SCCS--CGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEET
T ss_pred ccCCCch-hcCh--hhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCC
Confidence 7777766 4443 5666777777777777776 26666777777777777777765 666666667777777766654
Q ss_pred CCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhh---------cCCCCCCEEEcccCCCCCccccccCCCCCCcE
Q 040113 188 GYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNL---------ANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLH 258 (887)
Q Consensus 188 ~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l---------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 258 (887)
+.+.+|..+ ..+++|++|++++|.++ .+|..+..+++|++
T Consensus 162 ------------------------------~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~ 210 (328)
T 4fcg_A 162 ------------------------------ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS 210 (328)
T ss_dssp ------------------------------TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCE
T ss_pred ------------------------------CccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCE
Confidence 223333222 23566666666666665 45555666666666
Q ss_pred EeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCC
Q 040113 259 LDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSN 338 (887)
Q Consensus 259 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n 338 (887)
|++++|.+.+ +|..++.+++|++|++++|.+.+.+|..++.+++|++|++++|++.+.+|.. ++++++|++|++++|
T Consensus 211 L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~--~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 211 LKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD--IHRLTQLEKLDLRGC 287 (328)
T ss_dssp EEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT--GGGCTTCCEEECTTC
T ss_pred EEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh--hhcCCCCCEEeCCCC
Confidence 6666666653 4445666666666666666666666666666666666666666666666655 566666666666666
Q ss_pred CCCCccccccCCCCCccEEEccCCcC
Q 040113 339 KFSGELHASIGNLRSLEVLAIGRCNF 364 (887)
Q Consensus 339 ~l~~~~~~~l~~l~~L~~L~L~~n~i 364 (887)
.+.+.+|..++.+++|+.+++..+.+
T Consensus 288 ~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 288 VNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp TTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred CchhhccHHHhhccCceEEeCCHHHH
Confidence 66666666666666666666665443
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=4.7e-30 Score=300.99 Aligned_cols=318 Identities=20% Similarity=0.197 Sum_probs=217.2
Q ss_pred CCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccE
Q 040113 253 LSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQS 332 (887)
Q Consensus 253 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~ 332 (887)
+.+++.+++++|.+....+..+.++++|++|++++|.+++..|..|+.+++|++|+|++|.+++..|.. ++++++|++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV--FQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHH--HcCCCCCCE
Confidence 567888899988887555556788888899999888888777778888888888888888888766655 778888888
Q ss_pred EEccCCCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCC
Q 040113 333 LDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSN 412 (887)
Q Consensus 333 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n 412 (887)
|++++|.+++..+..|+.+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.. +..+++|+.|++++|
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-----LSLIPSLFHANVSYN 202 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-----GGGCTTCSEEECCSS
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-----hhhhhhhhhhhcccC
Confidence 888888888655555678888888888888888777777788888888888888776542 334455555555554
Q ss_pred cccccccccCCCCCCCeeEEeeCCCCCcccChhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCcc
Q 040113 413 WLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFD 492 (887)
Q Consensus 413 ~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~ 492 (887)
.+...+ . .++|+.|++++|.++.++
T Consensus 203 ~l~~l~-----------------------------~--------------------------~~~L~~L~ls~n~l~~~~ 227 (597)
T 3oja_B 203 LLSTLA-----------------------------I--------------------------PIAVEELDASHNSINVVR 227 (597)
T ss_dssp CCSEEE-----------------------------C--------------------------CTTCSEEECCSSCCCEEE
T ss_pred cccccc-----------------------------C--------------------------CchhheeeccCCcccccc
Confidence 222111 1 223444444444433322
Q ss_pred ccccccCCccccccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccC
Q 040113 493 QQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFS 572 (887)
Q Consensus 493 ~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 572 (887)
... .++|+.|++++|.+++ +..+..++
T Consensus 228 ~~~---------------------------------------------------~~~L~~L~L~~n~l~~--~~~l~~l~ 254 (597)
T 3oja_B 228 GPV---------------------------------------------------NVELTILKLQHNNLTD--TAWLLNYP 254 (597)
T ss_dssp CSC---------------------------------------------------CSCCCEEECCSSCCCC--CGGGGGCT
T ss_pred ccc---------------------------------------------------CCCCCEEECCCCCCCC--ChhhccCC
Confidence 110 1355666666666654 24455555
Q ss_pred CcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEc
Q 040113 573 DKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLIL 652 (887)
Q Consensus 573 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 652 (887)
+|+.|++++|.+++..|..|..+++|+.|++++|.+++. |..+..+++|+.|+|++|++++. |..+..+++|++|+|
T Consensus 255 -~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~l~~L~~L~L 331 (597)
T 3oja_B 255 -GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYL 331 (597)
T ss_dssp -TCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEEC
T ss_pred -CCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCcc-CcccccCCCCCEEEC
Confidence 577777777777666666777777777777777777753 45556677777777777777743 566677778888888
Q ss_pred cCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhh
Q 040113 653 QSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFL 693 (887)
Q Consensus 653 ~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~ 693 (887)
++|++.+.. ...+++|+.|++++|++.+.....++.
T Consensus 332 ~~N~l~~~~-----~~~~~~L~~L~l~~N~~~~~~~~~~~~ 367 (597)
T 3oja_B 332 DHNSIVTLK-----LSTHHTLKNLTLSHNDWDCNSLRALFR 367 (597)
T ss_dssp CSSCCCCCC-----CCTTCCCSEEECCSSCEEHHHHHHHTT
T ss_pred CCCCCCCcC-----hhhcCCCCEEEeeCCCCCChhHHHHHH
Confidence 888776652 245678888888888887665444433
No 43
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=6.5e-29 Score=271.55 Aligned_cols=303 Identities=25% Similarity=0.367 Sum_probs=255.7
Q ss_pred CcEEEEEcCCCcccccccCCcccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcE
Q 040113 101 GHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVS 180 (887)
Q Consensus 101 ~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~ 180 (887)
.++++|+++++.+... + .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+.+ +| .+.++++|++
T Consensus 44 ~~L~~L~l~~~~i~~~--~--~~~~~~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 44 ESITKLVVAGEKVASI--Q--GIEYLTNLEYLNLNGNQITD--ISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRE 114 (347)
T ss_dssp TTCSEEECCSSCCCCC--T--TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSE
T ss_pred ccccEEEEeCCccccc--h--hhhhcCCccEEEccCCcccc--chh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCE
Confidence 5789999999988643 2 68899999999999999986 444 9999999999999999865 44 6999999999
Q ss_pred EEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEe
Q 040113 181 LDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLD 260 (887)
Q Consensus 181 L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 260 (887)
|++++|.+..+. . +..+++|++|++++|.....++. +..+++|++|++++|.+.+..+ +..+++|++|+
T Consensus 115 L~l~~n~i~~~~-------~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~ 183 (347)
T 4fmz_A 115 LYLNEDNISDIS-------P-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLS 183 (347)
T ss_dssp EECTTSCCCCCG-------G-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEE
T ss_pred EECcCCcccCch-------h-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEE
Confidence 999999865443 2 88999999999999976655554 8999999999999999886544 88999999999
Q ss_pred CcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCC
Q 040113 261 LSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKF 340 (887)
Q Consensus 261 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l 340 (887)
+++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+
T Consensus 184 l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l 255 (347)
T 4fmz_A 184 LNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP----LANLSQLTWLEIGTNQI 255 (347)
T ss_dssp CTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCC
T ss_pred ccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc----hhcCCCCCEEECCCCcc
Confidence 99999975433 8899999999999999986655 8899999999999999985433 77899999999999999
Q ss_pred CCccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccc
Q 040113 341 SGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKV 420 (887)
Q Consensus 341 ~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~ 420 (887)
++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+....
T Consensus 256 ~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~-- 327 (347)
T 4fmz_A 256 SDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEV--IGGLTNLTTLFLSQNHITDIR-- 327 (347)
T ss_dssp CCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHH--HHTCTTCSEEECCSSSCCCCG--
T ss_pred CCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhH--hhccccCCEEEccCCcccccc--
Confidence 864 5688999999999999999864 46889999999999999998777655 788999999999998665443
Q ss_pred cCCCCCCCeeEEeeCCCCCcccChhhhcCCcccEEecccCccc
Q 040113 421 TSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIH 463 (887)
Q Consensus 421 ~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~Ls~n~l~ 463 (887)
. +..+++|++|++++|.++
T Consensus 328 -----------------------~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 328 -----------------------P-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp -----------------------G-GGGCTTCSEESSSCC---
T ss_pred -----------------------C-hhhhhccceeehhhhccc
Confidence 2 667788888888888764
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=3.8e-32 Score=309.72 Aligned_cols=117 Identities=26% Similarity=0.301 Sum_probs=55.1
Q ss_pred HHHhhcCCCCCEEEccCCCCCCCchhhh-cCCC----CCCEEEcccCCCCC----ccccccCCCCCCcEEeCcCCCCCCc
Q 040113 199 ANLVEKLSNLETLDLGYVSIRSTIPHNL-ANLS----SLTFLSLHSCGLQG----RIQSSLGNLSKLLHLDLSLNELLGE 269 (887)
Q Consensus 199 ~~~~~~l~~L~~L~L~~n~~~~~~~~~l-~~l~----~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~ 269 (887)
+..+..+++|++|++++|.+....+..+ ..++ +|++|++++|.++. .++..+..+++|++|++++|.+.+.
T Consensus 49 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 128 (461)
T 1z7x_W 49 SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA 128 (461)
T ss_dssp HHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred HHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchH
Confidence 3444444555555555554443322222 1222 45555555555542 3344555555555555555555433
Q ss_pred chhhc-----cCCCCCCEEEccCCCCCCc----cchhhhCCCCCCEEEccCCcCC
Q 040113 270 LPVSI-----GNLHSLKKLDLSINNLSGE----LPTSIQNLVSLEELDLSFNKLS 315 (887)
Q Consensus 270 ~p~~l-----~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 315 (887)
.+..+ ...++|++|++++|.+++. ++..+..+++|++|++++|.+.
T Consensus 129 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 129 GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence 22222 1234555555555555542 2334444555555555555544
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.2e-27 Score=259.33 Aligned_cols=270 Identities=19% Similarity=0.192 Sum_probs=222.7
Q ss_pred CCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCC
Q 040113 127 VHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLS 206 (887)
Q Consensus 127 ~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~ 206 (887)
+.|++|+|++|++++. .+..|+++++|++|+|++|.+.+..|..++++++|++|++++|.+..++ ..+ .+
T Consensus 52 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~-------~~~--~~ 121 (330)
T 1xku_A 52 PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP-------EKM--PK 121 (330)
T ss_dssp TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCC-------SSC--CT
T ss_pred CCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccC-------hhh--cc
Confidence 6899999999999875 4557999999999999999998888999999999999999999866543 111 27
Q ss_pred CCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCC--ccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEE
Q 040113 207 NLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQG--RIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLD 284 (887)
Q Consensus 207 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 284 (887)
+|++|++++|.+.+..+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.++. +|..+. ++|++|+
T Consensus 122 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~ 198 (330)
T 1xku_A 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELH 198 (330)
T ss_dssp TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEE
T ss_pred cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEE
Confidence 89999999999998888889999999999999999864 667788999999999999999874 555543 7899999
Q ss_pred ccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcC
Q 040113 285 LSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNF 364 (887)
Q Consensus 285 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i 364 (887)
+++|.+++..+..+..+++|++|++++|.+++..+.. +..+++|++|++++|+++ .+|..+..+++|++|++++|++
T Consensus 199 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS--LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp CTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT--GGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhh--ccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcC
Confidence 9999999888888999999999999999998766655 788999999999999988 6788888999999999999999
Q ss_pred CccCCccccC------CCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCC
Q 040113 365 SGRIPSSLRN------LTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSN 412 (887)
Q Consensus 365 ~~~~~~~l~~------l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n 412 (887)
++..+..|.. .+.++.+++++|.+.........+..+++++.+++++|
T Consensus 276 ~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 276 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 8766655543 36788899999987642222223777888888888877
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.1e-27 Score=259.54 Aligned_cols=292 Identities=19% Similarity=0.230 Sum_probs=177.8
Q ss_pred CCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCC
Q 040113 129 LEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNL 208 (887)
Q Consensus 129 L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L 208 (887)
+++++++++.++. +|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+..+. |..++.+++|
T Consensus 33 l~~l~~~~~~l~~--lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L 102 (330)
T 1xku_A 33 LRVVQCSDLGLEK--VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS------PGAFAPLVKL 102 (330)
T ss_dssp TTEEECTTSCCCS--CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC------TTTTTTCTTC
T ss_pred CeEEEecCCCccc--cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeC------HHHhcCCCCC
Confidence 4444555554442 555443 68899999999998776667888888888888888754332 4556677777
Q ss_pred CEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCC--cchhhccCCCCCCEEEcc
Q 040113 209 ETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLG--ELPVSIGNLHSLKKLDLS 286 (887)
Q Consensus 209 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~ 286 (887)
++|++++|.+.. +|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.. ..+..+.++++|++|+++
T Consensus 103 ~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 103 ERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp CEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred CEEECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence 777777777663 333332 567777777777666666666667777777777766642 445566666666666666
Q ss_pred CCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCCc
Q 040113 287 INNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSG 366 (887)
Q Consensus 287 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~ 366 (887)
+|.++. +|..+. ++|++|++++|++++..+.. +..+++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus 180 ~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~- 253 (330)
T 1xku_A 180 DTNITT-IPQGLP--PSLTELHLDGNKITKVDAAS--LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV- 253 (330)
T ss_dssp SSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGG--GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-
T ss_pred CCcccc-CCcccc--ccCCEEECCCCcCCccCHHH--hcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-
Confidence 666663 343332 56666666666666554444 566666666666666666555556666666666666666665
Q ss_pred cCCccccCCCCCCEEEcCCCCCccccchhhh----hcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCccc
Q 040113 367 RIPSSLRNLTQLITLDLSQNSYRGTMELDFL----LVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEF 442 (887)
Q Consensus 367 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~----l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~ 442 (887)
.+|..+..+++|++|++++|.+++..+..+. ....+.++.+++++|++.... ..
T Consensus 254 ~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~----------------------i~ 311 (330)
T 1xku_A 254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE----------------------IQ 311 (330)
T ss_dssp SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG----------------------SC
T ss_pred cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc----------------------cC
Confidence 4555666666666666666666554433310 001244455555555433211 22
Q ss_pred ChhhhcCCcccEEecccCc
Q 040113 443 PNFLKNQHHLMLLDLSSNR 461 (887)
Q Consensus 443 ~~~l~~~~~L~~L~Ls~n~ 461 (887)
|..+..+..++.+++++|+
T Consensus 312 ~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 312 PSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp GGGGTTCCCGGGEEC----
T ss_pred ccccccccceeEEEecccC
Confidence 3556667777777777764
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=7.8e-31 Score=298.85 Aligned_cols=360 Identities=20% Similarity=0.146 Sum_probs=244.9
Q ss_pred CcEEEEEcCCCcccccccCCcccccCCCCCeEECCCCCCCCC---CCCccccCCCCCCEEECCCCCCCccCCcccc-CCC
Q 040113 101 GHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSS---EIPSEIINLSRLSYLNLSHSSFFGQIPSEIL-ELV 176 (887)
Q Consensus 101 ~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~---~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~-~l~ 176 (887)
.+++.|+|+++.+...... ..+..+++|++|+|++|.+++. .++..+..+++|++|+|++|.+.+..+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWA-ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHH-HHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHH-HHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 4689999999988654321 1367889999999999998743 2466788889999999999998765554444 355
Q ss_pred ----CCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhc-----CCCCCCEEEcccCCCCCc--
Q 040113 177 ----NLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLA-----NLSSLTFLSLHSCGLQGR-- 245 (887)
Q Consensus 177 ----~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~-----~l~~L~~L~L~~n~l~~~-- 245 (887)
+|++|++++|.+.... ...++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++.
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~--~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAG--CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp STTCCCCEEECTTSCCBGGG--HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred hCCCceeEEEccCCCCCHHH--HHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 6999999999743211 124677888999999999999988765444332 356899999999988864
Q ss_pred --cccccCCCCCCcEEeCcCCCCCCcchhhcc-----CCCCCCEEEccCCCCCCc----cchhhhCCCCCCEEEccCCcC
Q 040113 246 --IQSSLGNLSKLLHLDLSLNELLGELPVSIG-----NLHSLKKLDLSINNLSGE----LPTSIQNLVSLEELDLSFNKL 314 (887)
Q Consensus 246 --~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l 314 (887)
++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 239 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence 355567788999999999988655444443 366899999999988864 577778888999999999887
Q ss_pred CCCCCch---hhccCCCCccEEEccCCCCCCc----cccccCCCCCccEEEccCCcCCccCCcccc-----CCCCCCEEE
Q 040113 315 SGEFPWS---IVIGNFTQLQSLDFTSNKFSGE----LHASIGNLRSLEVLAIGRCNFSGRIPSSLR-----NLTQLITLD 382 (887)
Q Consensus 315 ~~~~~~~---~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~-----~l~~L~~L~ 382 (887)
.+..... .....+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+. ..++|++|+
T Consensus 240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 319 (461)
T 1z7x_W 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeE
Confidence 6432111 1133578899999999988754 566677788889999988888654333332 236888888
Q ss_pred cCCCCCccccc--hhhhhcCCCCCCEEEccCCcccccccccCC----CCCCCeeEEeeCCCCCc-----ccChhhhcCCc
Q 040113 383 LSQNSYRGTME--LDFLLVSLKNLEVLSLSSNWLSLLTKVTSN----TTSQKFTVVGLRSCNLI-----EFPNFLKNQHH 451 (887)
Q Consensus 383 L~~n~l~~~~~--~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~----~~~~~L~~l~l~~~~l~-----~~~~~l~~~~~ 451 (887)
+++|.+++... ....+..+++|++|++++|.+...+..... ...++|+.+++++|.+. .++..+..+++
T Consensus 320 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 399 (461)
T 1z7x_W 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 399 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred cCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC
Confidence 88888876532 122356778888888888866544321100 01234444444444444 33444444444
Q ss_pred ccEEecccCccc
Q 040113 452 LMLLDLSSNRIH 463 (887)
Q Consensus 452 L~~L~Ls~n~l~ 463 (887)
|++|++++|+++
T Consensus 400 L~~L~l~~N~i~ 411 (461)
T 1z7x_W 400 LRELDLSNNCLG 411 (461)
T ss_dssp CCEEECCSSSCC
T ss_pred ccEEECCCCCCC
Confidence 444444444443
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=8.5e-28 Score=260.64 Aligned_cols=284 Identities=18% Similarity=0.173 Sum_probs=231.7
Q ss_pred EEEcCCCcccccccCCcccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEcc
Q 040113 105 KLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLS 184 (887)
Q Consensus 105 ~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~ 184 (887)
.++++++.+. .++. .+ .++|++|++++|.+.+. .|..|+++++|++|++++|.+.+..|..++++++|++|+++
T Consensus 37 ~l~~~~~~l~-~ip~--~~--~~~l~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 37 VVQCSDLGLK-AVPK--EI--SPDTTLLDLQNNDISEL-RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EEECCSSCCS-SCCS--CC--CTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred EEECCCCCcc-ccCC--CC--CCCCeEEECCCCcCCcc-CHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 3444555554 3332 33 36899999999999865 56689999999999999999988889999999999999999
Q ss_pred CCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCC--ccccccCCCCCCcEEeCc
Q 040113 185 LNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQG--RIQSSLGNLSKLLHLDLS 262 (887)
Q Consensus 185 ~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls 262 (887)
+|.+..++ ..+. ++|++|++++|.+.+..+..+..+++|++|++++|.++. ..+..+..+ +|++|+++
T Consensus 111 ~n~l~~l~-------~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 111 KNHLVEIP-------PNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp SSCCCSCC-------SSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred CCcCCccC-------cccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence 99866544 1122 799999999999998888889999999999999999863 667778887 99999999
Q ss_pred CCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCC
Q 040113 263 LNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSG 342 (887)
Q Consensus 263 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 342 (887)
+|.+++ +|..+. ++|++|++++|.+++..+..+..+++|++|++++|++.+..+.. ++.+++|++|++++|+++
T Consensus 181 ~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~- 254 (332)
T 2ft3_A 181 EAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS--LSFLPTLRELHLDNNKLS- 254 (332)
T ss_dssp SSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG--GGGCTTCCEEECCSSCCC-
T ss_pred CCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH--hhCCCCCCEEECCCCcCe-
Confidence 999975 565544 78999999999999888888999999999999999998766655 788999999999999998
Q ss_pred ccccccCCCCCccEEEccCCcCCccCCccccC------CCCCCEEEcCCCCCc--cccchhhhhcCCCCCCEEEccCC
Q 040113 343 ELHASIGNLRSLEVLAIGRCNFSGRIPSSLRN------LTQLITLDLSQNSYR--GTMELDFLLVSLKNLEVLSLSSN 412 (887)
Q Consensus 343 ~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~------l~~L~~L~L~~n~l~--~~~~~~~~l~~l~~L~~L~L~~n 412 (887)
.+|..+..+++|++|++++|++++..+..+.. ...|+.|++++|.+. +..+. .+..+++|+.+++++|
T Consensus 255 ~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~--~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 255 RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA--TFRCVTDRLAIQFGNY 330 (332)
T ss_dssp BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGG--GGTTBCCSTTEEC---
T ss_pred ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcc--cccccchhhhhhcccc
Confidence 77888999999999999999998766666654 367899999999887 33333 3788899999999887
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=7.1e-27 Score=253.35 Aligned_cols=289 Identities=20% Similarity=0.195 Sum_probs=153.7
Q ss_pred CCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEE
Q 040113 303 SLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLD 382 (887)
Q Consensus 303 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ 382 (887)
+++.++++++.++ .+|.. + .++|+.|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~--~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKE--I--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCS-SCCSC--C--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCcc-ccCCC--C--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 4555555555554 44433 2 24555666666655544455555566666666666665555555555556666666
Q ss_pred cCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCcccC-hhhhcCCcccEEecccCc
Q 040113 383 LSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFP-NFLKNQHHLMLLDLSSNR 461 (887)
Q Consensus 383 L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~-~~l~~~~~L~~L~Ls~n~ 461 (887)
+++|.+..... . + .++|++|++++|.+. .++ ..+..+++|+.|++++|.
T Consensus 109 L~~n~l~~l~~-~--~--~~~L~~L~l~~n~i~-------------------------~~~~~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 109 ISKNHLVEIPP-N--L--PSSLVELRIHDNRIR-------------------------KVPKGVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp CCSSCCCSCCS-S--C--CTTCCEEECCSSCCC-------------------------CCCSGGGSSCSSCCEEECCSCC
T ss_pred CCCCcCCccCc-c--c--cccCCEEECCCCccC-------------------------ccCHhHhCCCccCCEEECCCCc
Confidence 66555542221 1 0 134444444444322 222 235666777777777777
Q ss_pred ccC--CCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCcEEEccCcccccc
Q 040113 462 IHG--KIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGE 539 (887)
Q Consensus 462 l~~--~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~ 539 (887)
++. ..+..+.. + +|+.|++++|.++.++..
T Consensus 159 l~~~~~~~~~~~~--l-~L~~L~l~~n~l~~l~~~--------------------------------------------- 190 (332)
T 2ft3_A 159 LENSGFEPGAFDG--L-KLNYLRISEAKLTGIPKD--------------------------------------------- 190 (332)
T ss_dssp CBGGGSCTTSSCS--C-CCSCCBCCSSBCSSCCSS---------------------------------------------
T ss_pred cccCCCCcccccC--C-ccCEEECcCCCCCccCcc---------------------------------------------
Confidence 752 44444433 2 555555555554443221
Q ss_pred CChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccC
Q 040113 540 IPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLIN 619 (887)
Q Consensus 540 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 619 (887)
+ .++|++|++++|.+++..+..+..++ +|++|++++|++++..+..+..+++|++|++++|+++ .+|..+..
T Consensus 191 ----~--~~~L~~L~l~~n~i~~~~~~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 191 ----L--PETLNELHLDHNKIQAIELEDLLRYS-KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp ----S--CSSCSCCBCCSSCCCCCCTTSSTTCT-TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred ----c--cCCCCEEECCCCcCCccCHHHhcCCC-CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 1 13555566666666555555555555 4666666666666555555666666666666666666 45555666
Q ss_pred CCCCcEEeCCCCcCCCCCCccccC------CCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCc
Q 040113 620 CSKLEFLDIGDNQIRDIFPSWLGT------LPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNR 682 (887)
Q Consensus 620 l~~L~~L~L~~N~l~~~~~~~~~~------l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 682 (887)
+++|++|++++|++++..+..|.. .++|+.|++++|++......+..+..+++|+.+++++|+
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 666666666666666655554443 245666666666665211111222456666777776664
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=6.1e-30 Score=301.30 Aligned_cols=445 Identities=14% Similarity=0.106 Sum_probs=220.4
Q ss_pred CCccccceEecCCCCcEEEEEcCCCcccccccCCcccccCCCCCeEECCCCCCCC--CCCCcccc------------CCC
Q 040113 87 DCCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKS--SEIPSEII------------NLS 152 (887)
Q Consensus 87 ~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~--~~lp~~~~------------~l~ 152 (887)
-|++|.++.+... +.+.+.++ .....+ ..+.++++|++|+|+++.... ..+|..++ .++
T Consensus 40 vck~W~~~~~~~~----~~l~~~~~-~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 112 (592)
T 3ogk_B 40 VCRRWFKIDSETR----EHVTMALC-YTATPD--RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLR 112 (592)
T ss_dssp SCHHHHHHHHHHC----CEEEESCG-GGSCHH--HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCT
T ss_pred HhHHHHHhhhccc----cEEEEeec-cccChH--HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCC
Confidence 4558998864321 23333332 111221 255678889999998754210 01232222 456
Q ss_pred CCCEEECCCCCCCccCCccccC-CC-CCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCC
Q 040113 153 RLSYLNLSHSSFFGQIPSEILE-LV-NLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLS 230 (887)
Q Consensus 153 ~L~~L~Ls~n~~~~~~p~~l~~-l~-~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~ 230 (887)
+|++|+|++|.+.+..+..+.. ++ +|++|++++|.. .....++.....+++|++|++++|.+.+.....
T Consensus 113 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~----~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~----- 183 (592)
T 3ogk_B 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG----FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW----- 183 (592)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE----EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHH-----
T ss_pred CCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC----cCHHHHHHHHhhCCCCCEEECccccccCcchhH-----
Confidence 6666666666555444444444 22 266666655530 011122333334555555555555443331100
Q ss_pred CCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCC----CcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCE
Q 040113 231 SLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELL----GELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEE 306 (887)
Q Consensus 231 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~----~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 306 (887)
++..+..+++|++|++++|.+. +.++..+.++++|++|++++|.+.+ ++..+..+++|++
T Consensus 184 ---------------l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~ 247 (592)
T 3ogk_B 184 ---------------LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEE 247 (592)
T ss_dssp ---------------HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCE
T ss_pred ---------------HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHh
Confidence 2222334555555555555554 2233444556666666666666553 4555666666666
Q ss_pred EEccCCcCC---CCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCCccCC-ccccCCCCCCEEE
Q 040113 307 LDLSFNKLS---GEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIP-SSLRNLTQLITLD 382 (887)
Q Consensus 307 L~L~~n~l~---~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L~ 382 (887)
|+++..... +..+.. +..+++|+.|+++++. .+.+|..+..+++|++|++++|.+++... ..+..+++|++|+
T Consensus 248 L~l~~~~~~~~~~~~~~~--l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~ 324 (592)
T 3ogk_B 248 FCGGSLNEDIGMPEKYMN--LVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLE 324 (592)
T ss_dssp EEECBCCCCTTCTTSSSC--CCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEE
T ss_pred hcccccccccchHHHHHH--hhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEe
Confidence 666542211 111222 5556677777776643 23456666667777777777777654332 3356677777777
Q ss_pred cCCCCCccccchhhhhcCCCCCCEEEccC-----------CcccccccccCCCCCCCeeEEeeCCCCCcccChhhhcCCc
Q 040113 383 LSQNSYRGTMELDFLLVSLKNLEVLSLSS-----------NWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHH 451 (887)
Q Consensus 383 L~~n~l~~~~~~~~~l~~l~~L~~L~L~~-----------n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~ 451 (887)
++ +.+..... ......+++|++|++++ +.++.. .++.....+++
T Consensus 325 L~-~~~~~~~l-~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~-----------------------~~~~l~~~~~~ 379 (592)
T 3ogk_B 325 TR-NVIGDRGL-EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR-----------------------GLIALAQGCQE 379 (592)
T ss_dssp EE-GGGHHHHH-HHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH-----------------------HHHHHHHHCTT
T ss_pred cc-CccCHHHH-HHHHHhCCCCCEEEeecCccccccccccCccCHH-----------------------HHHHHHhhCcc
Confidence 77 33322211 12245677788888773 222111 12233455777
Q ss_pred ccEEecccCcccCCCCccccccCCCCCcEEEcc----CCcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCc
Q 040113 452 LMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLS----HNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTV 527 (887)
Q Consensus 452 L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls----~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~ 527 (887)
|++|+++.|.+++..+..+.. .+++|+.|+++ .|.+++.+..
T Consensus 380 L~~L~l~~~~l~~~~~~~l~~-~~~~L~~L~l~~~~~~n~l~~~p~~--------------------------------- 425 (592)
T 3ogk_B 380 LEYMAVYVSDITNESLESIGT-YLKNLCDFRLVLLDREERITDLPLD--------------------------------- 425 (592)
T ss_dssp CSEEEEEESCCCHHHHHHHHH-HCCSCCEEEEEECSCCSCCSSCCCH---------------------------------
T ss_pred CeEEEeecCCccHHHHHHHHh-hCCCCcEEEEeecCCCccccCchHH---------------------------------
Confidence 888888777776544443321 25566666664 2333322100
Q ss_pred EEEccCccccccCChhhhCcCCCCeEEcCCCc--cCCCCCCcccccCCcceEEecCCCccccc-CCccccCCCcccEEEc
Q 040113 528 NYLVSNNSFIGEIPSWLCKLDSLEILVLSHNN--LSGLLPRCLGSFSDKLSILDLRANNFFGT-IPNTFMKESRLGMIDL 604 (887)
Q Consensus 528 ~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~p~~l~~l~~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L 604 (887)
..++..+..+++|+.|++++|. +++..+..+....++|++|++++|++++. ++..+..+++|++|++
T Consensus 426 ----------~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l 495 (592)
T 3ogk_B 426 ----------NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEM 495 (592)
T ss_dssp ----------HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEE
T ss_pred ----------HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeec
Confidence 0122334556777777776433 44333333333122466666666655432 2223344555555555
Q ss_pred cCCeeeee-CCccccCCCCCcEEeCCCCcCCC
Q 040113 605 SHNLFQGR-IPRSLINCSKLEFLDIGDNQIRD 635 (887)
Q Consensus 605 s~N~l~~~-~~~~l~~l~~L~~L~L~~N~l~~ 635 (887)
++|.+++. ++..+..+++|++|+|++|+++.
T Consensus 496 ~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 496 RGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp ESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred cCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 55554432 12222344555555555555443
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=3.2e-27 Score=258.45 Aligned_cols=285 Identities=20% Similarity=0.222 Sum_probs=227.8
Q ss_pred CCCCccccceEecCCCCcEEEEEcCCCcccccccCCcccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCC
Q 040113 85 NIDCCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSF 164 (887)
Q Consensus 85 ~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~ 164 (887)
+...|.|.|+ |+- +++.+. .++. .+. ++|++|++++|.+++. .+..++++++|++|++++|.+
T Consensus 26 ~~~~C~~~~~-c~~----------~~~~l~-~iP~--~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l 88 (353)
T 2z80_A 26 ASLSCDRNGI-CKG----------SSGSLN-SIPS--GLT--EAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGI 88 (353)
T ss_dssp -CCEECTTSE-EEC----------CSTTCS-SCCT--TCC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCC
T ss_pred cCCCCCCCeE-eeC----------CCCCcc-cccc--ccc--ccCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCcc
Confidence 4567999887 643 344444 2332 333 5899999999999864 344799999999999999999
Q ss_pred CccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCch-hhhcCCCCCCEEEcccCC-C
Q 040113 165 FGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIP-HNLANLSSLTFLSLHSCG-L 242 (887)
Q Consensus 165 ~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~L~~n~-l 242 (887)
.+..|..+.++++|++|++++|.+..+. +..++.+++|++|++++|.+.+..+ ..+..+++|++|++++|. +
T Consensus 89 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~ 162 (353)
T 2z80_A 89 NTIEEDSFSSLGSLEHLDLSYNYLSNLS------SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF 162 (353)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSSCC------HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC
T ss_pred CccCHhhcCCCCCCCEEECCCCcCCcCC------HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccc
Confidence 8888888999999999999999865443 4558899999999999999986555 578899999999999994 7
Q ss_pred CCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchh
Q 040113 243 QGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSI 322 (887)
Q Consensus 243 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 322 (887)
.+..+..+.++++|++|++++|.+.+..|..++.+++|++|++++|.+.......+..+++|++|++++|.+++..+...
T Consensus 163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 242 (353)
T 2z80_A 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL 242 (353)
T ss_dssp CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--
T ss_pred cccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccc
Confidence 76667889999999999999999998889999999999999999999975444455678999999999999986543321
Q ss_pred -hccCCCCccEEEccCCCCCC----ccccccCCCCCccEEEccCCcCCccCCcc-ccCCCCCCEEEcCCCCCccccc
Q 040113 323 -VIGNFTQLQSLDFTSNKFSG----ELHASIGNLRSLEVLAIGRCNFSGRIPSS-LRNLTQLITLDLSQNSYRGTME 393 (887)
Q Consensus 323 -~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~i~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~ 393 (887)
.....+.++.++++++.+.+ .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++.+..+
T Consensus 243 ~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 243 STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp ----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 12345678888999888875 36777888899999999999988 45544 5788999999999998887665
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.8e-27 Score=260.50 Aligned_cols=258 Identities=17% Similarity=0.176 Sum_probs=202.5
Q ss_pred CCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEE
Q 040113 524 SRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMID 603 (887)
Q Consensus 524 ~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 603 (887)
..++++++++|++.+..+..+.++++|++|++++|.+++..|..+.+++ +|++|++++|++++..+..|..+++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG-SLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC-CCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 4556666666666655556788889999999999998887788888887 799999999998876666688889999999
Q ss_pred ccCCeeeeeCC-ccccCCCCCcEEeCCCC-cCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCC
Q 040113 604 LSHNLFQGRIP-RSLINCSKLEFLDIGDN-QIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNN 681 (887)
Q Consensus 604 Ls~N~l~~~~~-~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N 681 (887)
+++|++++..+ ..+.++++|++|++++| .+.+..+..+..+++|++|++++|++.+..+..+ ..+++|+.|++++|
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n 208 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL--KSIQNVSHLILHMK 208 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT--TTCSEEEEEEEECS
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH--hccccCCeecCCCC
Confidence 99999886544 47888899999999988 5777777788889999999999999888877665 67888999999998
Q ss_pred cCcccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCc
Q 040113 682 RFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDG 761 (887)
Q Consensus 682 ~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 761 (887)
++. .+|...+.. .+.|+.|++++|.+++
T Consensus 209 ~l~-~~~~~~~~~---------------------------------------------------~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 209 QHI-LLLEIFVDV---------------------------------------------------TSSVECLELRDTDLDT 236 (353)
T ss_dssp CST-THHHHHHHH---------------------------------------------------TTTEEEEEEESCBCTT
T ss_pred ccc-cchhhhhhh---------------------------------------------------cccccEEECCCCcccc
Confidence 874 444332211 4568889999999987
Q ss_pred cChhhhh---cccCCCEEeCCCCcccc----cCCccccCCCCCCEEeCCCCcccccCCcc-ccCCCCCCeeecccCcccc
Q 040113 762 MIPTSIA---NLKGLQVLNLDNNNLQG----HIPSCLGNLTNLESLDLSNNNFLGQIPQQ-LVELTFLEFFNVSDNYLTG 833 (887)
Q Consensus 762 ~ip~~l~---~l~~L~~L~Ls~N~l~~----~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~-l~~L~~L~~L~ls~N~l~g 833 (887)
..+..+. ....++.++|+++.+++ .+|..++++++|++|||++|+++. +|.. ++.+++|++|++++|++++
T Consensus 237 ~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 237 FHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCccC
Confidence 6655443 45678888888888877 477888899999999999999984 5554 5889999999999999998
Q ss_pred cCCC
Q 040113 834 PIPQ 837 (887)
Q Consensus 834 ~iP~ 837 (887)
..|.
T Consensus 316 ~~~~ 319 (353)
T 2z80_A 316 SCPR 319 (353)
T ss_dssp CHHH
T ss_pred cCCC
Confidence 7663
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=1.7e-25 Score=253.29 Aligned_cols=230 Identities=21% Similarity=0.217 Sum_probs=163.6
Q ss_pred CCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEe
Q 040113 548 DSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLD 627 (887)
Q Consensus 548 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 627 (887)
++++.|+|++|.+++..|..|..++ +|++|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLH-HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCC-CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 4566666666666666666666666 577777777777666666677777777777777777766666677777777777
Q ss_pred CCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCcc
Q 040113 628 IGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLK 707 (887)
Q Consensus 628 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~ 707 (887)
|++|++....+..|..+++|++|++++|+..+.++.. .+.++++|+.|++++|++++ +|. +.
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~l~~-~~~--~~-------------- 215 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG-AFEGLFNLKYLNLGMCNIKD-MPN--LT-------------- 215 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCTTCCEEECTTSCCSS-CCC--CT--------------
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh-hccCCCCCCEEECCCCcccc-ccc--cc--------------
Confidence 7777777666666777777777777774443333332 12566777777777777662 231 00
Q ss_pred ccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccC
Q 040113 708 YLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHI 787 (887)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~ 787 (887)
.++.|+.|+|++|.+++..|..|.++++|+.|+|++|++++..
T Consensus 216 -------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 258 (452)
T 3zyi_A 216 -------------------------------------PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE 258 (452)
T ss_dssp -------------------------------------TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEEC
T ss_pred -------------------------------------ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceEC
Confidence 0356778888888888888888888888888888888888888
Q ss_pred CccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccc
Q 040113 788 PSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTG 833 (887)
Q Consensus 788 p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g 833 (887)
|..|.++++|+.|||++|++++..+..+..+++|++|++++|++..
T Consensus 259 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 259 RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred HHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 8888888888888888888887777778888888888888887654
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1.1e-25 Score=254.01 Aligned_cols=249 Identities=22% Similarity=0.239 Sum_probs=207.9
Q ss_pred CcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEcc
Q 040113 526 TVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLS 605 (887)
Q Consensus 526 l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 605 (887)
...++..+..+. .+|..+. ++++.|+|++|++++..+..|.+++ +|++|+|++|++++..+..|.++++|++|+|+
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLR-HLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCS-SCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCC-CCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 345666666554 4555443 6788899999999888888888888 79999999999988888888889999999999
Q ss_pred CCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcc
Q 040113 606 HNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTG 685 (887)
Q Consensus 606 ~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 685 (887)
+|++++..+..|..+++|++|+|++|++....+..|..+++|++|++++|+..+.++.. .+.++++|+.|++++|.++
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~l~- 198 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMCNLR- 198 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCSSCCEEECTTSCCS-
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc-hhhcccccCeecCCCCcCc-
Confidence 99998777778888899999999999998887778888999999999886554444432 2267888999999999886
Q ss_pred cCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChh
Q 040113 686 KLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPT 765 (887)
Q Consensus 686 ~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~ 765 (887)
.+|. +. ..+.|+.|+|++|.+++..|.
T Consensus 199 ~~~~--~~---------------------------------------------------~l~~L~~L~Ls~N~l~~~~~~ 225 (440)
T 3zyj_A 199 EIPN--LT---------------------------------------------------PLIKLDELDLSGNHLSAIRPG 225 (440)
T ss_dssp SCCC--CT---------------------------------------------------TCSSCCEEECTTSCCCEECTT
T ss_pred cccc--cC---------------------------------------------------CCcccCEEECCCCccCccChh
Confidence 4442 00 146799999999999999999
Q ss_pred hhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccc
Q 040113 766 SIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTG 833 (887)
Q Consensus 766 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g 833 (887)
.|.++++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|++|++++|++..
T Consensus 226 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 226 SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 99999999999999999999999999999999999999999999888889999999999999999874
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=9.5e-26 Score=255.41 Aligned_cols=252 Identities=19% Similarity=0.181 Sum_probs=218.6
Q ss_pred CCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeC
Q 040113 549 SLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDI 628 (887)
Q Consensus 549 ~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 628 (887)
....++.++..++ .+|..+. +++++|+|++|++++..+..|..+++|++|++++|++++..+..|.++++|++|+|
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 3567888888887 5776554 37999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCccc
Q 040113 629 GDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKY 708 (887)
Q Consensus 629 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~ 708 (887)
++|++++..+..|..+++|++|+|++|++....+..+ ..+++|+.|++++|...+.+|...|..
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~~-------------- 194 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF--NRVPSLMRLDLGELKKLEYISEGAFEG-------------- 194 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTTT--------------
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHH--hcCCcccEEeCCCCCCccccChhhccC--------------
Confidence 9999999988889999999999999999998766555 789999999999977666666543221
Q ss_pred cccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCC
Q 040113 709 LQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIP 788 (887)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p 788 (887)
.+.|+.|+|++|++++. | .+..+++|++|+|++|.+++..|
T Consensus 195 -------------------------------------l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~ 235 (452)
T 3zyi_A 195 -------------------------------------LFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRP 235 (452)
T ss_dssp -------------------------------------CTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECG
T ss_pred -------------------------------------CCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCc
Confidence 45689999999999964 4 48899999999999999999999
Q ss_pred ccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccccCCCC-CcCccccccccCCCcCCCCCC
Q 040113 789 SCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQG-RQFATFDNSSFESNSGLCGRP 859 (887)
Q Consensus 789 ~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~~n~~lcg~~ 859 (887)
..|.++++|+.|+|++|++++..|..|..+++|++|++++|++++..|.. ..+..+....+.+||.-|++.
T Consensus 236 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 236 GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 99999999999999999999999999999999999999999999655433 234455667788998888765
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=2.7e-26 Score=245.87 Aligned_cols=231 Identities=25% Similarity=0.311 Sum_probs=139.9
Q ss_pred CCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCccccc--CCccccCCCcccEEEccCCeeeeeCCccccCCCCCcE
Q 040113 548 DSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGT--IPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEF 625 (887)
Q Consensus 548 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 625 (887)
++|++|++++|.++...+..+.+++ +|++|++++|+++.. .+..+..+++|++|++++|.+.+ +|..+..+++|++
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCE
T ss_pred CCCCEEECCCCccCccCHhHhhccc-cCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCE
Confidence 3455555555555533333344554 455555555555422 23444455666666666666653 3444556666666
Q ss_pred EeCCCCcCCCCCC-ccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcc-cCChhhhhccccchhccc
Q 040113 626 LDIGDNQIRDIFP-SWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTG-KLPSKSFLCWNAMKIVNT 703 (887)
Q Consensus 626 L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~ip~~~~~~~~~l~~l~~ 703 (887)
|++++|++++..+ ..+..+++|++|++++|++.+..+..+ ..+++|++|++++|.+.+ .+|.. +.
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~-~~---------- 172 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDI-FT---------- 172 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT--TTCTTCCEEECTTCEEGGGEECSC-CT----------
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc--ccCcCCCEEECCCCccccccchhH-Hh----------
Confidence 6666666655543 455666666666666666665554433 455666666666666654 22211 00
Q ss_pred CCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcc
Q 040113 704 SDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNL 783 (887)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l 783 (887)
-++.|+.|++++|.+++..|..++.+++|++|+|++|++
T Consensus 173 -----------------------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 211 (306)
T 2z66_A 173 -----------------------------------------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211 (306)
T ss_dssp -----------------------------------------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred -----------------------------------------hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCcc
Confidence 034566777777777766677777777777777777777
Q ss_pred cccCCccccCCCCCCEEeCCCCcccccCCccccCC-CCCCeeecccCccccc
Q 040113 784 QGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVEL-TFLEFFNVSDNYLTGP 834 (887)
Q Consensus 784 ~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L-~~L~~L~ls~N~l~g~ 834 (887)
++..+..+..+++|+.|||++|++++.+|..+..+ ++|++|++++|++++.
T Consensus 212 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 212 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp SBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 76666667777777777777777777777777776 3777777777777754
No 57
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=4.1e-26 Score=246.07 Aligned_cols=271 Identities=24% Similarity=0.318 Sum_probs=216.4
Q ss_pred CCCCCCCCCCCCCCccccceEecCCCCcEEEEEcCCCcccccc----cCCcccccCCCCCeEECCCCCCCCCCCCccccC
Q 040113 75 KAASWKPEEGNIDCCSWDGVECSENTGHVMKLDLSNSCLYGSI----NSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIIN 150 (887)
Q Consensus 75 ~~~~w~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~----~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~~ 150 (887)
++..|... -..++|.|.++.|...... -..+...|.. +....-....++++|+|++|.+. .+|..+++
T Consensus 31 aLl~~k~~-~~~~~~~~~~~w~~~~~~~-----~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~--~lp~~l~~ 102 (328)
T 4fcg_A 31 VLSQWQRH-YNADRNRWHSAWRQANSNN-----PQIETRTGRALKATADLLEDATQPGRVALELRSVPLP--QFPDQAFR 102 (328)
T ss_dssp HHHHHHHH-HHHCCTTHHHHHHHHTTTC-----TTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS--SCCSCGGG
T ss_pred HHHHHHHh-ccCCchhhhhhhccccccc-----ccccccCCcchhhhHHHHhcccccceeEEEccCCCch--hcChhhhh
Confidence 45567531 0247899999888432110 0112222211 00001123467888888888887 37777888
Q ss_pred CCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCC
Q 040113 151 LSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLS 230 (887)
Q Consensus 151 l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~ 230 (887)
+++|++|+|++|.+. .+|..++++++|++|++++|. +. .+|..++.++
T Consensus 103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~------------------------------l~-~lp~~l~~l~ 150 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP------------------------------LR-ALPASIASLN 150 (328)
T ss_dssp GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCC------------------------------CC-CCCGGGGGCT
T ss_pred CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCc------------------------------cc-cCcHHHhcCc
Confidence 888888888888876 677777767666666666664 44 4577788999
Q ss_pred CCCEEEcccCCCCCccccccCC---------CCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCC
Q 040113 231 SLTFLSLHSCGLQGRIQSSLGN---------LSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNL 301 (887)
Q Consensus 231 ~L~~L~L~~n~l~~~~~~~l~~---------l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 301 (887)
+|++|++++|.+.+.+|..+.. +++|++|++++|.++ .+|..++++++|++|++++|.+++ +|..++.+
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l 228 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHL 228 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGC
T ss_pred CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccC
Confidence 9999999999988888887654 999999999999998 888999999999999999999995 66679999
Q ss_pred CCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEE
Q 040113 302 VSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITL 381 (887)
Q Consensus 302 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L 381 (887)
++|++|++++|.+.+.+|.. ++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++.+++|+.+
T Consensus 229 ~~L~~L~Ls~n~~~~~~p~~--~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l 306 (328)
T 4fcg_A 229 PKLEELDLRGCTALRNYPPI--FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306 (328)
T ss_dssp TTCCEEECTTCTTCCBCCCC--TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred CCCCEEECcCCcchhhhHHH--hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEE
Confidence 99999999999999999987 8999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCc
Q 040113 382 DLSQNSYR 389 (887)
Q Consensus 382 ~L~~n~l~ 389 (887)
++..+.+.
T Consensus 307 ~l~~~~~~ 314 (328)
T 4fcg_A 307 LVPPHLQA 314 (328)
T ss_dssp ECCGGGSC
T ss_pred eCCHHHHH
Confidence 99977654
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1.6e-25 Score=252.63 Aligned_cols=247 Identities=22% Similarity=0.204 Sum_probs=211.5
Q ss_pred EEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCccc
Q 040113 507 TLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFF 586 (887)
Q Consensus 507 ~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 586 (887)
.++.++..++..+...+..++.+++++|++.+..+..|.++++|++|+|++|.+++..+..|.+++ +|++|+|++|+++
T Consensus 47 ~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~-~L~~L~L~~n~l~ 125 (440)
T 3zyj_A 47 KVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA-NLNTLELFDNRLT 125 (440)
T ss_dssp EEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCS-SCCEEECCSSCCS
T ss_pred EEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCc-cCCEEECCCCcCC
Confidence 444455555444444456777788888888888888899999999999999999988888999998 7999999999999
Q ss_pred ccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCC-CcCCCCCCccccCCCCCCEEEccCCcccccCCCCc
Q 040113 587 GTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGD-NQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPR 665 (887)
Q Consensus 587 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 665 (887)
+..+..|..+++|++|++++|++++..+..|.++++|++|++++ |.+....+..|..+++|++|++++|+++... .
T Consensus 126 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~-- 202 (440)
T 3zyj_A 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-N-- 202 (440)
T ss_dssp SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-C--
T ss_pred eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-c--
Confidence 88888899999999999999999988888999999999999999 4566666668999999999999999998653 2
Q ss_pred cccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeecccccccccc
Q 040113 666 IDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKV 745 (887)
Q Consensus 666 ~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (887)
...+++|+.|++++|++++..|.. |..
T Consensus 203 -~~~l~~L~~L~Ls~N~l~~~~~~~-~~~--------------------------------------------------- 229 (440)
T 3zyj_A 203 -LTPLIKLDELDLSGNHLSAIRPGS-FQG--------------------------------------------------- 229 (440)
T ss_dssp -CTTCSSCCEEECTTSCCCEECTTT-TTT---------------------------------------------------
T ss_pred -cCCCcccCEEECCCCccCccChhh-hcc---------------------------------------------------
Confidence 367899999999999998654532 211
Q ss_pred CCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCccccc
Q 040113 746 PDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQ 810 (887)
Q Consensus 746 ~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ 810 (887)
.+.|+.|+|++|++++..+..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++...
T Consensus 230 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 45789999999999999999999999999999999999998888999999999999999998754
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=7.2e-28 Score=258.41 Aligned_cols=246 Identities=21% Similarity=0.206 Sum_probs=175.2
Q ss_pred cEEEccCccccccCChhhhCcCCCCeEEcCCCccC-CCCCCccc-------ccCCcceEEecCCCcccccCCccc--cCC
Q 040113 527 VNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLS-GLLPRCLG-------SFSDKLSILDLRANNFFGTIPNTF--MKE 596 (887)
Q Consensus 527 ~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~-------~l~~~L~~L~L~~N~l~~~~~~~~--~~l 596 (887)
+.+++++|.+ .+|..+... |+.|++++|.+. ..+|..+. +++ +|++|++++|++++.+|..+ ..+
T Consensus 46 ~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 46 EYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGIS-GLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp TTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTS-CCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred eeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcC-CccEEEccCCcccchhHHHHHHhcC
Confidence 3344444444 445544433 677777777763 34454443 455 57777777777777777665 677
Q ss_pred CcccEEEccCCeeeeeCCccccCC-----CCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccC--CCCccccC
Q 040113 597 SRLGMIDLSHNLFQGRIPRSLINC-----SKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGII--REPRIDCG 669 (887)
Q Consensus 597 ~~L~~L~Ls~N~l~~~~~~~l~~l-----~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~~~ 669 (887)
++|++|++++|++++. |..+..+ ++|++|++++|++.+..|..|+.+++|++|++++|++.+.+ +....+..
T Consensus 121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 7778888888877766 6666665 78888888888888877778888888888888888876542 22222356
Q ss_pred CCCCCEEEcCCCcCcc--cCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCC
Q 040113 670 FSKLRIIDLSNNRFTG--KLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPD 747 (887)
Q Consensus 670 l~~L~~L~Ls~N~l~~--~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (887)
+++|++|++++|++++ .++...+.. .+
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~---------------------------------------------------l~ 228 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAA---------------------------------------------------RV 228 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHT---------------------------------------------------TC
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhc---------------------------------------------------CC
Confidence 7888888888888762 122111111 35
Q ss_pred ceeEEEeecCcCCccCh-hhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeec
Q 040113 748 ILTSIILSSNRFDGMIP-TSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNV 826 (887)
Q Consensus 748 ~L~~L~Ls~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~l 826 (887)
.|+.|+|++|++++.+| ..+..+++|++|+|++|+++ .+|..+. ++|++|||++|++++. |. +..+++|++|++
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L 303 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSL 303 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEEC
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEec
Confidence 68889999999988775 45667889999999999998 7787776 8899999999999876 65 888999999999
Q ss_pred ccCccccc
Q 040113 827 SDNYLTGP 834 (887)
Q Consensus 827 s~N~l~g~ 834 (887)
++|+++++
T Consensus 304 ~~N~l~~~ 311 (312)
T 1wwl_A 304 KGNPFLDS 311 (312)
T ss_dssp TTCTTTCC
T ss_pred cCCCCCCC
Confidence 99998863
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=5.1e-26 Score=240.92 Aligned_cols=228 Identities=21% Similarity=0.253 Sum_probs=153.0
Q ss_pred CeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCC
Q 040113 551 EILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGD 630 (887)
Q Consensus 551 ~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~ 630 (887)
+.++.+++.++ .+|..+ +++|++|++++|++++..+..|..+++|++|++++|.+++..|..|.++++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 45666666665 344433 22577777777777766666677777777777777777766666777777777777777
Q ss_pred Cc-CCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCcccc
Q 040113 631 NQ-IRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYL 709 (887)
Q Consensus 631 N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~ 709 (887)
|+ +....|..+..+++|++|++++|++.+..+..+ .++++|++|++++|++++ +|...+..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~-~~~~~~~~--------------- 151 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF--RGLAALQYLYLQDNALQA-LPDDTFRD--------------- 151 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCCC-CCTTTTTT---------------
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHh--hCCcCCCEEECCCCcccc-cCHhHhcc---------------
Confidence 75 666666667777777777777777766655444 556777777777777663 33221111
Q ss_pred ccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCc
Q 040113 710 QDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPS 789 (887)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~ 789 (887)
.+.|+.|++++|++++..+..+..+++|++|+|++|.+++..|.
T Consensus 152 ------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 195 (285)
T 1ozn_A 152 ------------------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195 (285)
T ss_dssp ------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred ------------------------------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHh
Confidence 34567777777777766666677777777777777777777777
Q ss_pred cccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccccCC
Q 040113 790 CLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIP 836 (887)
Q Consensus 790 ~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g~iP 836 (887)
.|+++++|+.|++++|++++..+..+..+++|++|++++|++.+..+
T Consensus 196 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred HccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 77777777777777777777666667777777777777777765433
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=4.2e-26 Score=244.36 Aligned_cols=255 Identities=25% Similarity=0.287 Sum_probs=149.4
Q ss_pred CccccceEecCCCCcEEEEEcCCCcccccccCCcccccCCCCCeEECCCCCCCCCCCCc-cccCCCCCCEEECCCCCCCc
Q 040113 88 CCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPS-EIINLSRLSYLNLSHSSFFG 166 (887)
Q Consensus 88 ~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~-~~~~l~~L~~L~Ls~n~~~~ 166 (887)
.|.|++|.|+.. .+. .++. .+ .++|++|+|++|.++. +|. .|+++++|++|++++|.+..
T Consensus 6 ~C~~~~l~c~~~------------~l~-~ip~--~~--~~~l~~L~L~~n~l~~--i~~~~~~~l~~L~~L~L~~n~l~~ 66 (306)
T 2z66_A 6 SCSGTEIRCNSK------------GLT-SVPT--GI--PSSATRLELESNKLQS--LPHGVFDKLTQLTKLSLSSNGLSF 66 (306)
T ss_dssp EEETTEEECCSS------------CCS-SCCS--CC--CTTCCEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCCCE
T ss_pred eeCCCEEEcCCC------------Ccc-cCCC--CC--CCCCCEEECCCCccCc--cCHhHhhccccCCEEECCCCccCc
Confidence 389999998643 222 2221 22 2578888888888874 444 36788888888888887752
Q ss_pred --cCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCC
Q 040113 167 --QIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQG 244 (887)
Q Consensus 167 --~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~ 244 (887)
..|..+..+++|++|++++|.+.. ++..+..+++|++|++++|.+.+..+
T Consensus 67 ~~~~~~~~~~~~~L~~L~Ls~n~i~~-------l~~~~~~l~~L~~L~l~~n~l~~~~~--------------------- 118 (306)
T 2z66_A 67 KGCCSQSDFGTTSLKYLDLSFNGVIT-------MSSNFLGLEQLEHLDFQHSNLKQMSE--------------------- 118 (306)
T ss_dssp EEEEEHHHHSCSCCCEEECCSCSEEE-------EEEEEETCTTCCEEECTTSEEESSTT---------------------
T ss_pred ccCcccccccccccCEEECCCCcccc-------ChhhcCCCCCCCEEECCCCccccccc---------------------
Confidence 235555666667777776665221 22234444444455444444443322
Q ss_pred ccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCC-ccchhhhCCCCCCEEEccCCcCCCCCCchhh
Q 040113 245 RIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSG-ELPTSIQNLVSLEELDLSFNKLSGEFPWSIV 323 (887)
Q Consensus 245 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 323 (887)
...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|++++..|..
T Consensus 119 --~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-- 194 (306)
T 2z66_A 119 --FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA-- 194 (306)
T ss_dssp --TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT--
T ss_pred --chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHH--
Confidence 0344555555555555555554445555555555555555555544 34555555566666666666655444444
Q ss_pred ccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCCccCCccccCCC-CCCEEEcCCCCCccccc
Q 040113 324 IGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLT-QLITLDLSQNSYRGTME 393 (887)
Q Consensus 324 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~ 393 (887)
+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..++ +|++|++++|.+.+...
T Consensus 195 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp TTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred hcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 55566666666666666655555566666677777777776666666666663 77777777777766544
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=1e-25 Score=238.54 Aligned_cols=235 Identities=23% Similarity=0.303 Sum_probs=169.6
Q ss_pred CCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCe-eeeeCCccccCCCCCcEE
Q 040113 548 DSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNL-FQGRIPRSLINCSKLEFL 626 (887)
Q Consensus 548 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L 626 (887)
++|++|++++|.+++..+..+..++ +|++|++++|++++..+..|..+++|++|++++|. +....|..+..+++|++|
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACR-NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCC-CCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 4667777777777666556666666 57777777777776666677777777777777775 665556677777777777
Q ss_pred eCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCc
Q 040113 627 DIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDL 706 (887)
Q Consensus 627 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~ 706 (887)
++++|++++..+..+..+++|++|++++|++.+..+..+ ..+++|+.|++++|++++ +|...+..
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~-~~~~~~~~------------ 175 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF--RDLGNLTHLFLHGNRISS-VPERAFRG------------ 175 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCE-ECTTTTTT------------
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHh--ccCCCccEEECCCCcccc-cCHHHhcC------------
Confidence 777777777767777777777777777777776554433 567777788888777763 33221111
Q ss_pred cccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCccccc
Q 040113 707 KYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGH 786 (887)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ 786 (887)
.+.|+.|++++|.+++..|..++.+++|+.|++++|.+++.
T Consensus 176 ---------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 216 (285)
T 1ozn_A 176 ---------------------------------------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216 (285)
T ss_dssp ---------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred ---------------------------------------ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcC
Confidence 35678888888888888888888899999999999999987
Q ss_pred CCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccccCCCC
Q 040113 787 IPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQG 838 (887)
Q Consensus 787 ~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g~iP~~ 838 (887)
.+..+..+++|+.|+|++|++.+..+.. .-...++.+..+.+.+.+..|..
T Consensus 217 ~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 217 PTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp CHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred CHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 7777888999999999999988765432 12234566667888888888864
No 63
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=9e-28 Score=282.75 Aligned_cols=381 Identities=17% Similarity=0.114 Sum_probs=257.1
Q ss_pred CcEEEEEcCCCcccccccCCccccc-CC-CCCeEECCCCC-CCCCCCCccccCCCCCCEEECCCCCCCcc----CCcccc
Q 040113 101 GHVMKLDLSNSCLYGSINSSSSLFK-LV-HLEWLNLAFND-FKSSEIPSEIINLSRLSYLNLSHSSFFGQ----IPSEIL 173 (887)
Q Consensus 101 ~~v~~L~L~~~~l~~~~~~~~~l~~-l~-~L~~L~L~~n~-~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~----~p~~l~ 173 (887)
.++++|+|+++.+.+.... .+.+ ++ +|++|+|++|. ++...++..+..+++|++|+|++|.+.+. ++..+.
T Consensus 112 ~~L~~L~L~~~~i~~~~~~--~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLD--RLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp TTCCEEEEESCBCCHHHHH--HHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred CCCCeEEeeccEecHHHHH--HHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 4678888888877654332 4444 33 48888888776 22111233344788888888888877655 444456
Q ss_pred CCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCC---Ccccccc
Q 040113 174 ELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQ---GRIQSSL 250 (887)
Q Consensus 174 ~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~---~~~~~~l 250 (887)
.+++|++|++++|.+..+ ....++..+..+++|++|++++|.+.+ ++..+..+++|++|+++++... +..+..+
T Consensus 190 ~~~~L~~L~L~~n~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKI--SPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HCCCCCEEECTTCCCSSC--CHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred cCCCccEEEeeccCCCcc--CHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 788888888888874322 123556677788888888888887775 5677888888888888764332 2344566
Q ss_pred CCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccc-hhhhCCCCCCEEEccCCcCCC-CCCchhhccCCC
Q 040113 251 GNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELP-TSIQNLVSLEELDLSFNKLSG-EFPWSIVIGNFT 328 (887)
Q Consensus 251 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~l~ 328 (887)
..+++|+.|+++++. .+.+|..+..+++|++|++++|.+++... ..+..+++|++|+++ +.+.. .++. ....++
T Consensus 267 ~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~--~~~~~~ 342 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEV--LAQYCK 342 (592)
T ss_dssp CCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHH--HHHHCT
T ss_pred hccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHH--HHHhCC
Confidence 778888888888753 34677777888889999999888765443 346788899999888 33332 2222 245678
Q ss_pred CccEEEccC-----------CCCCCcc-ccccCCCCCccEEEccCCcCCccCCccccC-CCCCCEEEcC----CCCCccc
Q 040113 329 QLQSLDFTS-----------NKFSGEL-HASIGNLRSLEVLAIGRCNFSGRIPSSLRN-LTQLITLDLS----QNSYRGT 391 (887)
Q Consensus 329 ~L~~L~L~~-----------n~l~~~~-~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~-l~~L~~L~L~----~n~l~~~ 391 (887)
+|++|++++ +.+++.. +.....+++|++|+++.+.+++..+..+.. +++|++|+++ .|.+++.
T Consensus 343 ~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~ 422 (592)
T 3ogk_B 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL 422 (592)
T ss_dssp TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC
T ss_pred CCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc
Confidence 899999983 4555432 223445788999999888888766666654 8889999886 5566653
Q ss_pred cc---hhhhhcCCCCCCEEEccCCc--ccccccccCCCCCCCeeEEeeCCCCCc--ccChhhhcCCcccEEecccCcccC
Q 040113 392 ME---LDFLLVSLKNLEVLSLSSNW--LSLLTKVTSNTTSQKFTVVGLRSCNLI--EFPNFLKNQHHLMLLDLSSNRIHG 464 (887)
Q Consensus 392 ~~---~~~~l~~l~~L~~L~L~~n~--i~~~~~~~~~~~~~~L~~l~l~~~~l~--~~~~~l~~~~~L~~L~Ls~n~l~~ 464 (887)
.. ....+..+++|+.|+++.|. +...........+++|+.|++++|.+. .++..+..+++|++|++++|.+++
T Consensus 423 p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 423 PLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE 502 (592)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBH
T ss_pred hHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcH
Confidence 11 11235678889999987653 222221112224678888999888876 456667788889999999988765
Q ss_pred CCCcc-ccccCCCCCcEEEccCCcccCcc
Q 040113 465 KIPSW-LLDPSTQNLSALNLSHNLLTGFD 492 (887)
Q Consensus 465 ~~p~~-~~~~~~~~L~~L~Ls~n~l~~~~ 492 (887)
....+ ... +++|+.|++++|+++...
T Consensus 503 ~~~~~~~~~--l~~L~~L~ls~n~it~~~ 529 (592)
T 3ogk_B 503 RAIAAAVTK--LPSLRYLWVQGYRASMTG 529 (592)
T ss_dssp HHHHHHHHH--CSSCCEEEEESCBCCTTC
T ss_pred HHHHHHHHh--cCccCeeECcCCcCCHHH
Confidence 43332 233 788899999998877654
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=6.2e-27 Score=251.11 Aligned_cols=248 Identities=24% Similarity=0.236 Sum_probs=159.8
Q ss_pred cCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCC-CccCCcccc-------CCCCCcEEEccCCCCCCccccCC
Q 040113 125 KLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSF-FGQIPSEIL-------ELVNLVSLDLSLNSGYGLELQKP 196 (887)
Q Consensus 125 ~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~-~~~~p~~l~-------~l~~L~~L~l~~n~~~~l~~~~~ 196 (887)
..++|++|++++|.+ .+|..+... |++|+|++|.+ ...+|..+. ++++|++|++++|.+.+
T Consensus 41 ~~~~L~~l~l~~n~l---~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~------ 109 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE---ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTG------ 109 (312)
T ss_dssp EEEECTTHHHHCCTT---CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBS------
T ss_pred cCCCceeEeeccccc---ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccc------
Confidence 344566666666666 255544433 66666666665 334555444 56666666666665321
Q ss_pred ChHHHh--hcCCCCCEEEccCCCCCCCchhhhcCC-----CCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCc
Q 040113 197 NFANLV--EKLSNLETLDLGYVSIRSTIPHNLANL-----SSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGE 269 (887)
Q Consensus 197 ~~~~~~--~~l~~L~~L~L~~n~~~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 269 (887)
.+|..+ ..+++|++|++++|.+.+. |..++.+ ++|++|++++|.+.+..+..++.+++|++|++++|++.+.
T Consensus 110 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 110 TAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188 (312)
T ss_dssp CCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHH
T ss_pred hhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcc
Confidence 122222 5566666666666666665 5555554 7777777777777776667777777788888887777654
Q ss_pred --chhhc--cCCCCCCEEEccCCCCCC--ccc-hhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCC
Q 040113 270 --LPVSI--GNLHSLKKLDLSINNLSG--ELP-TSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSG 342 (887)
Q Consensus 270 --~p~~l--~~l~~L~~L~L~~n~l~~--~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 342 (887)
.+..+ +.+++|++|++++|.+++ .++ ..+..+++|++|++++|++++..|.. .+..+++|++|++++|.++
T Consensus 189 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~Ls~N~l~- 266 (312)
T 1wwl_A 189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP-SCDWPSQLNSLNLSFTGLK- 266 (312)
T ss_dssp HHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS-CCCCCTTCCEEECTTSCCS-
T ss_pred hHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh-hhhhcCCCCEEECCCCccC-
Confidence 23344 677788888888887773 122 33456778888888888877655322 1455677888888888877
Q ss_pred ccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCCCCcc
Q 040113 343 ELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRG 390 (887)
Q Consensus 343 ~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~ 390 (887)
.+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 267 ~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 267 QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 5666555 7778888888877755 44 7777777777777777654
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=2.7e-24 Score=249.24 Aligned_cols=262 Identities=26% Similarity=0.299 Sum_probs=167.3
Q ss_pred cccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCcEEE
Q 040113 451 HLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYL 530 (887)
Q Consensus 451 ~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~ 530 (887)
+++.|++++|.++ .+|..+ .++|+.|++++|.++.++. ..+.|++|++++|++++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l----~~~L~~L~L~~N~l~~lp~-------~l~~L~~L~Ls~N~l~~------------- 95 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCL----PAHITTLVIPDNNLTSLPA-------LPPELRTLEVSGNQLTS------------- 95 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCC----CTTCSEEEECSCCCSCCCC-------CCTTCCEEEECSCCCSC-------------
T ss_pred CCcEEEecCCCcC-ccChhh----CCCCcEEEecCCCCCCCCC-------cCCCCCEEEcCCCcCCc-------------
Confidence 5788888888887 566654 3578888888887776554 12346666666666543
Q ss_pred ccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeee
Q 040113 531 VSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQ 610 (887)
Q Consensus 531 l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 610 (887)
+|. .+++|++|++++|.+++ +|. .+. +|+.|++++|++++. |.. +++|++|++++|+++
T Consensus 96 ---------lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~-~L~~L~L~~N~l~~l-p~~---l~~L~~L~Ls~N~l~ 154 (622)
T 3g06_A 96 ---------LPV---LPPGLLELSIFSNPLTH-LPA---LPS-GLCKLWIFGNQLTSL-PVL---PPGLQELSVSDNQLA 154 (622)
T ss_dssp ---------CCC---CCTTCCEEEECSCCCCC-CCC---CCT-TCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCS
T ss_pred ---------CCC---CCCCCCEEECcCCcCCC-CCC---CCC-CcCEEECCCCCCCcC-CCC---CCCCCEEECcCCcCC
Confidence 332 35666777777776664 333 222 577777777776653 322 366777777777766
Q ss_pred eeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChh
Q 040113 611 GRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSK 690 (887)
Q Consensus 611 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~ 690 (887)
+. |. ..++|+.|++++|+++++ | ..+++|+.|++++|++++... .+++|+.|++++|.++ .+|..
T Consensus 155 ~l-~~---~~~~L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls~N~l~~l~~------~~~~L~~L~L~~N~l~-~l~~~ 219 (622)
T 3g06_A 155 SL-PA---LPSELCKLWAYNNQLTSL-P---MLPSGLQELSVSDNQLASLPT------LPSELYKLWAYNNRLT-SLPAL 219 (622)
T ss_dssp CC-CC---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCS-SCCCC
T ss_pred Cc-CC---ccCCCCEEECCCCCCCCC-c---ccCCCCcEEECCCCCCCCCCC------ccchhhEEECcCCccc-ccCCC
Confidence 43 32 235677777777777664 3 345677777777777665321 2356777777777665 33311
Q ss_pred hhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcc
Q 040113 691 SFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANL 770 (887)
Q Consensus 691 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l 770 (887)
+++|+.|+|++|.|++ +| ..+
T Consensus 220 -------------------------------------------------------~~~L~~L~Ls~N~L~~-lp---~~l 240 (622)
T 3g06_A 220 -------------------------------------------------------PSGLKELIVSGNRLTS-LP---VLP 240 (622)
T ss_dssp -------------------------------------------------------CTTCCEEECCSSCCSC-CC---CCC
T ss_pred -------------------------------------------------------CCCCCEEEccCCccCc-CC---CCC
Confidence 3457777777777775 44 445
Q ss_pred cCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccccCCC
Q 040113 771 KGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQ 837 (887)
Q Consensus 771 ~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g~iP~ 837 (887)
++|+.|+|++|.++ .+|. .+++|+.|+|++|+++ .+|..+.++++|++|++++|+++|.+|.
T Consensus 241 ~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 241 SELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 67777777777777 4554 4567777777777777 5677777777777777777777776664
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1e-25 Score=242.22 Aligned_cols=266 Identities=21% Similarity=0.170 Sum_probs=184.5
Q ss_pred ccEEeCCCcccccCC---CCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecC
Q 040113 505 LLTLDLSSNNLQGPL---PVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLR 581 (887)
Q Consensus 505 L~~L~ls~n~l~~~~---~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~ 581 (887)
++..+++.+.+...+ ....++++++++++|++.+..|..+..+++|++|++++|.+++..+ +..++ +|++|+++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~-~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS-TLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCT-TCCEEECC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcC-CCCEEECc
Confidence 555666666654322 1224467777777777777666677777777777777777765444 66666 57777777
Q ss_pred CCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccC
Q 040113 582 ANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGII 661 (887)
Q Consensus 582 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 661 (887)
+|++++.. ..++|++|++++|++++..+.. +++|++|++++|++++..+..+..+++|++|++++|++.+..
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 77776443 2366777777777777655433 456777777777777776666777777777777777776654
Q ss_pred CCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeecccccc
Q 040113 662 REPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMT 741 (887)
Q Consensus 662 ~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (887)
+..+ ...+++|++|++++|++++. |..
T Consensus 161 ~~~~-~~~l~~L~~L~L~~N~l~~~-~~~--------------------------------------------------- 187 (317)
T 3o53_A 161 FAEL-AASSDTLEHLNLQYNFIYDV-KGQ--------------------------------------------------- 187 (317)
T ss_dssp GGGG-GGGTTTCCEEECTTSCCCEE-ECC---------------------------------------------------
T ss_pred HHHH-hhccCcCCEEECCCCcCccc-ccc---------------------------------------------------
Confidence 4332 12456777777777776522 110
Q ss_pred ccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCccc-ccCCccccCCCC
Q 040113 742 YDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFL-GQIPQQLVELTF 820 (887)
Q Consensus 742 ~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~-~~~p~~l~~L~~ 820 (887)
..++.|+.|+|++|++++.. ..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|++. +.+|..+..++.
T Consensus 188 --~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~ 263 (317)
T 3o53_A 188 --VVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (317)
T ss_dssp --CCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHH
T ss_pred --cccccCCEEECCCCcCCcch-hhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhcccc
Confidence 01467889999999998654 45888999999999999998 46778888999999999999998 778888888999
Q ss_pred CCeeecc-cCcccccCCCC
Q 040113 821 LEFFNVS-DNYLTGPIPQG 838 (887)
Q Consensus 821 L~~L~ls-~N~l~g~iP~~ 838 (887)
|++++++ .+.++|..|..
T Consensus 264 L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 264 VQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp HHHHHHHHHHHHHSSSSCC
T ss_pred ceEEECCCchhccCCchhc
Confidence 9999988 45677776643
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=9.7e-24 Score=244.62 Aligned_cols=269 Identities=27% Similarity=0.348 Sum_probs=211.4
Q ss_pred CCeeEEeeCCCCCcccChhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCcccccc
Q 040113 427 QKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLL 506 (887)
Q Consensus 427 ~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~ 506 (887)
..++.++++++.+..+|..+. ++|+.|++++|.++ .+|. .+++|++|++++|+++.++. ..+.|+
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~-~lp~-----~l~~L~~L~Ls~N~l~~lp~-------~l~~L~ 104 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA-----LPPELRTLEVSGNQLTSLPV-------LPPGLL 104 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCS-CCCC-----CCTTCCEEEECSCCCSCCCC-------CCTTCC
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCC-CCCC-----cCCCCCEEEcCCCcCCcCCC-------CCCCCC
Confidence 358999999999999998775 89999999999998 4555 27899999999999997665 234577
Q ss_pred EEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCccc
Q 040113 507 TLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFF 586 (887)
Q Consensus 507 ~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 586 (887)
+|++++|.+++. |. .+++|+.|++++|++++ +|..+ + +|++|++++|+++
T Consensus 105 ~L~Ls~N~l~~l----------------------~~---~l~~L~~L~L~~N~l~~-lp~~l---~-~L~~L~Ls~N~l~ 154 (622)
T 3g06_A 105 ELSIFSNPLTHL----------------------PA---LPSGLCKLWIFGNQLTS-LPVLP---P-GLQELSVSDNQLA 154 (622)
T ss_dssp EEEECSCCCCCC----------------------CC---CCTTCCEEECCSSCCSC-CCCCC---T-TCCEEECCSSCCS
T ss_pred EEECcCCcCCCC----------------------CC---CCCCcCEEECCCCCCCc-CCCCC---C-CCCEEECcCCcCC
Confidence 888877776642 22 35678888888888874 45432 3 6888888888887
Q ss_pred ccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcc
Q 040113 587 GTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRI 666 (887)
Q Consensus 587 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 666 (887)
+. |. .+.+|+.|++++|++++ +| ..+++|+.|++++|+++++ |. .+++|+.|++++|.++....
T Consensus 155 ~l-~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l~~---- 218 (622)
T 3g06_A 155 SL-PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTSLPA---- 218 (622)
T ss_dssp CC-CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSCCC----
T ss_pred Cc-CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCcccccCC----
Confidence 54 32 34678888888888885 44 4467899999999998875 33 24789999999998886431
Q ss_pred ccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccC
Q 040113 667 DCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVP 746 (887)
Q Consensus 667 ~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (887)
.+++|+.|++++|++++ +|.. +
T Consensus 219 --~~~~L~~L~Ls~N~L~~-lp~~-------------------------------------------------------l 240 (622)
T 3g06_A 219 --LPSGLKELIVSGNRLTS-LPVL-------------------------------------------------------P 240 (622)
T ss_dssp --CCTTCCEEECCSSCCSC-CCCC-------------------------------------------------------C
T ss_pred --CCCCCCEEEccCCccCc-CCCC-------------------------------------------------------C
Confidence 24789999999998874 4411 4
Q ss_pred CceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCC
Q 040113 747 DILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELT 819 (887)
Q Consensus 747 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~ 819 (887)
++|+.|+|++|.|+ .+|. .+++|+.|+|++|+++ .+|..++++++|+.|+|++|++++.+|..+..++
T Consensus 241 ~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 241 SELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 56899999999998 5665 6789999999999999 7799999999999999999999999999887765
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=3.4e-25 Score=252.08 Aligned_cols=217 Identities=24% Similarity=0.225 Sum_probs=134.0
Q ss_pred CCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEe
Q 040113 548 DSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLD 627 (887)
Q Consensus 548 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 627 (887)
++|+.|+|++|.+++..|..+..++ +|++|+|++|.+++..| +..+++|++|++++|.+++..+ .++|++|+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCT-TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCC-CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 3677777777777666666666666 57777777777666554 6666777777777777665432 26677777
Q ss_pred CCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCcc
Q 040113 628 IGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLK 707 (887)
Q Consensus 628 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~ 707 (887)
+++|.+++..+. .+++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++.+|......
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~~~------------- 167 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAAS------------- 167 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCG--GGGSSEEEEECTTSCCCEEEGGGGGGG-------------
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhh--cCCCCCCEEECCCCCCCCcChHHHhhh-------------
Confidence 777777666443 34667777777777766655444 456677777777777665544331111
Q ss_pred ccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccC
Q 040113 708 YLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHI 787 (887)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~ 787 (887)
++.|+.|+|++|.+++..+ +..+++|+.|+|++|.+++..
T Consensus 168 --------------------------------------l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~ 207 (487)
T 3oja_A 168 --------------------------------------SDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMG 207 (487)
T ss_dssp --------------------------------------TTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEEC
T ss_pred --------------------------------------CCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCC
Confidence 2446666666666665422 234666666666666666543
Q ss_pred CccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCccc
Q 040113 788 PSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLT 832 (887)
Q Consensus 788 p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~ 832 (887)
| .++.+++|+.|||++|++++ +|..+..+++|++|++++|++.
T Consensus 208 ~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 208 P-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp G-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred H-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 3 36666666666666666664 4555666666666666666665
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=2.2e-23 Score=219.49 Aligned_cols=227 Identities=21% Similarity=0.192 Sum_probs=183.5
Q ss_pred EEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCc
Q 040113 553 LVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQ 632 (887)
Q Consensus 553 L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~ 632 (887)
++..+..+. .+|..+. .+|++|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|++++|+
T Consensus 12 ~~c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 444454554 4555443 368888888888888877788888888888888888888777788888889999999998
Q ss_pred CCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcc-cCChhhhhccccchhcccCCcccccc
Q 040113 633 IRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTG-KLPSKSFLCWNAMKIVNTSDLKYLQD 711 (887)
Q Consensus 633 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~ip~~~~~~~~~l~~l~~~~~~~~~~ 711 (887)
+++..+..|..+++|++|++++|++.+..+..+ ..+++|++|++++|++.+ .+|.. +..
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~l~~~-~~~----------------- 147 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEY-FSN----------------- 147 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCC--TTCTTCCEEECCSSCCCCCCCCGG-GGG-----------------
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhc--ccCCCCCEEECcCCccceecCchh-hcc-----------------
Confidence 888888888888899999999998887765544 678899999999998875 24533 111
Q ss_pred ccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCC----EEeCCCCcccccC
Q 040113 712 VISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQ----VLNLDNNNLQGHI 787 (887)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~----~L~Ls~N~l~~~~ 787 (887)
.+.|+.|++++|++++..+..+..+++|+ .|++++|.+++..
T Consensus 148 ----------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~ 193 (276)
T 2z62_A 148 ----------------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193 (276)
T ss_dssp ----------------------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEEC
T ss_pred ----------------------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccC
Confidence 45689999999999988888888888887 8999999999777
Q ss_pred CccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccccCCCC
Q 040113 788 PSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQG 838 (887)
Q Consensus 788 p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g~iP~~ 838 (887)
+..+.. .+|+.|+|++|++++..+..+..+++|++|++++|++++..|.-
T Consensus 194 ~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 194 PGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp TTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred ccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 766654 58999999999999888878899999999999999999877754
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=1.7e-23 Score=219.37 Aligned_cols=216 Identities=27% Similarity=0.274 Sum_probs=122.8
Q ss_pred CCCccccceEecCCCCcEEEEEcCCCcccccccCCcccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCC
Q 040113 86 IDCCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFF 165 (887)
Q Consensus 86 ~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~ 165 (887)
.++|.|.|+.|.-. +.++.++++++.+.. ++. .+. +.+++|+|++|+++.. .+..|+++++|++|++++|.+.
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~--~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~ 74 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPS--NIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQ 74 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCS--CCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSCCS
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCC--CCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCccC
Confidence 47899999998643 346688898888774 332 232 5788888888888764 3456788888888888888876
Q ss_pred ccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCc
Q 040113 166 GQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGR 245 (887)
Q Consensus 166 ~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 245 (887)
+..+..+.++++|++|++++|.+..+. +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus 75 ~i~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 148 (270)
T 2o6q_A 75 TLPAGIFKELKNLETLWVTDNKLQALP------IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL 148 (270)
T ss_dssp CCCTTTTSSCTTCCEEECCSSCCCCCC------TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred eeChhhhcCCCCCCEEECCCCcCCcCC------HhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc
Confidence 444444566777777777777643332 22344455555555555555544444444555555555555554443
Q ss_pred cccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcC
Q 040113 246 IQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKL 314 (887)
Q Consensus 246 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 314 (887)
.+..+..+++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus 149 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 333344444444554444444443333344444444444444444433333344444444444444443
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=5.6e-25 Score=250.24 Aligned_cols=236 Identities=22% Similarity=0.172 Sum_probs=200.7
Q ss_pred CCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEE
Q 040113 524 SRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMID 603 (887)
Q Consensus 524 ~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 603 (887)
++++.|++++|.+.+..|..|..+++|++|+|++|.+++..| +..++ +|++|++++|++++..+ .++|+.|+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~-~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS-TLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCT-TCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCC-CCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 356666666666777777889999999999999999987766 77887 79999999999986543 37999999
Q ss_pred ccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcC
Q 040113 604 LSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRF 683 (887)
Q Consensus 604 Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 683 (887)
+++|.+++..+.. +++|+.|++++|++++..|..++.+++|++|+|++|.+++..+..+ ...+++|+.|++++|.+
T Consensus 106 L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l-~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 106 AANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL-AASSDTLEHLNLQYNFI 181 (487)
T ss_dssp CCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG-GGGTTTCCEEECTTSCC
T ss_pred CcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH-hhhCCcccEEecCCCcc
Confidence 9999999876654 5789999999999999999999999999999999999999776654 13689999999999998
Q ss_pred cccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccC
Q 040113 684 TGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMI 763 (887)
Q Consensus 684 ~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~i 763 (887)
++..+.. .++.|+.|+|++|.+++..
T Consensus 182 ~~~~~~~------------------------------------------------------~l~~L~~L~Ls~N~l~~~~ 207 (487)
T 3oja_A 182 YDVKGQV------------------------------------------------------VFAKLKTLDLSSNKLAFMG 207 (487)
T ss_dssp CEEECCC------------------------------------------------------CCTTCCEEECCSSCCCEEC
T ss_pred ccccccc------------------------------------------------------cCCCCCEEECCCCCCCCCC
Confidence 8541110 1567999999999999765
Q ss_pred hhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCccc-ccCCccccCCCCCCeeecc
Q 040113 764 PTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFL-GQIPQQLVELTFLEFFNVS 827 (887)
Q Consensus 764 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~-~~~p~~l~~L~~L~~L~ls 827 (887)
| .++.+++|+.|+|++|.+++ +|..++.+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus 208 ~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 208 P-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp G-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred H-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 5 49999999999999999996 7888999999999999999998 7788889999999999887
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=1.9e-25 Score=240.19 Aligned_cols=261 Identities=18% Similarity=0.187 Sum_probs=163.3
Q ss_pred cEEEEEcCCCcccccccCCcccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEE
Q 040113 102 HVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSL 181 (887)
Q Consensus 102 ~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L 181 (887)
+++..+++.+.+...... .+..+++|++|+|++|.+++. .|..|+.+++|++|+|++|.+.+..| +..+++|++|
T Consensus 11 ~l~i~~ls~~~l~~~~~~--~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L 85 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALAS--LRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTL 85 (317)
T ss_dssp EEEEESCCTTTHHHHHHH--HHTTGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEE
T ss_pred ceeEeeccccchhhhHHH--HhccCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEE
Confidence 455666666666443322 344566788888888887764 45667778888888888887765443 6677777777
Q ss_pred EccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeC
Q 040113 182 DLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDL 261 (887)
Q Consensus 182 ~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 261 (887)
++++|.+..+. .. ++|++|++++|.+.+..+. .+++|++|++
T Consensus 86 ~Ls~n~l~~l~-----------~~------------------------~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l 127 (317)
T 3o53_A 86 DLNNNYVQELL-----------VG------------------------PSIETLHAANNNISRVSCS---RGQGKKNIYL 127 (317)
T ss_dssp ECCSSEEEEEE-----------EC------------------------TTCCEEECCSSCCSEEEEC---CCSSCEEEEC
T ss_pred ECcCCcccccc-----------CC------------------------CCcCEEECCCCccCCcCcc---ccCCCCEEEC
Confidence 77777532211 12 4555555555555543332 2455666666
Q ss_pred cCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhh-hCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCC
Q 040113 262 SLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSI-QNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKF 340 (887)
Q Consensus 262 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l 340 (887)
++|.+++..+..++.+++|++|++++|.+++..+..+ ..+++|++|++++|.+++. +. ...+++|++|++++|++
T Consensus 128 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~---~~~l~~L~~L~Ls~N~l 203 (317)
T 3o53_A 128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG---QVVFAKLKTLDLSSNKL 203 (317)
T ss_dssp CSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC---CCCCTTCCEEECCSSCC
T ss_pred CCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc---ccccccCCEEECCCCcC
Confidence 6666665555556666666666666666665555554 3566777777777766643 22 23466777777777777
Q ss_pred CCccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCC
Q 040113 341 SGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSN 412 (887)
Q Consensus 341 ~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n 412 (887)
++ +|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+....... .+..+++|+.++++++
T Consensus 204 ~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~-~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 204 AF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD-FFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHH-HHHTCHHHHHHHHHHH
T ss_pred Cc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHH-HHhccccceEEECCCc
Confidence 64 3444667777777777777776 45666777777888888888776322222 3667777777777754
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=3.3e-27 Score=278.10 Aligned_cols=333 Identities=15% Similarity=0.128 Sum_probs=198.7
Q ss_pred CCCccccceEecCCCCcEEEEEcCCCcccccccCCcccccCCCCCeEECCCCCCCC-CC-CC------------ccccCC
Q 040113 86 IDCCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKS-SE-IP------------SEIINL 151 (887)
Q Consensus 86 ~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~-~~-lp------------~~~~~l 151 (887)
.-|++|.++.. ...+.+++..+.... + ...+.++++|++|+++++.... .. .| .....+
T Consensus 32 ~vck~W~~~~~----~~~~~l~~~~~~~~~--~-~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~ 104 (594)
T 2p1m_B 32 LVCKSWYEIER----WCRRKVFIGNCYAVS--P-ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSY 104 (594)
T ss_dssp TSCHHHHHHHH----HHCCEEEESSTTSSC--H-HHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHC
T ss_pred HHHHHHHHhhh----hhceEEeeccccccC--H-HHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhC
Confidence 34568988832 234466666543221 1 1256788999999999876221 10 11 113467
Q ss_pred CCCCEEECCCCCCCccCCcccc-CCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhc---
Q 040113 152 SRLSYLNLSHSSFFGQIPSEIL-ELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLA--- 227 (887)
Q Consensus 152 ~~L~~L~Ls~n~~~~~~p~~l~-~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~--- 227 (887)
++|++|+|++|.+.+..+..+. .+++|++|++++|.. + ....++..+..+++|++|++++|.+++..+..+.
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~--~--~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG--F--STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE--E--EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC--C--CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 8899999999988777666675 688999999988831 1 1123556667888999999988887665544433
Q ss_pred -CCCCCCEEEcccCC--CCCc-cccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCC-------CCCccch
Q 040113 228 -NLSSLTFLSLHSCG--LQGR-IQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINN-------LSGELPT 296 (887)
Q Consensus 228 -~l~~L~~L~L~~n~--l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-------l~~~~~~ 296 (887)
.+++|++|++++|. +... ++..+..+++|++|++++|...+.++..+..+++|++|++..+. +. .++.
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~ 259 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSV 259 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHH
Confidence 56788888888876 2211 12223456888888888874333467777778888888866553 22 2444
Q ss_pred hhhCCCCCCEE-EccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccc-cccCCCCCccEEEccCCcCCcc-CCcccc
Q 040113 297 SIQNLVSLEEL-DLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELH-ASIGNLRSLEVLAIGRCNFSGR-IPSSLR 373 (887)
Q Consensus 297 ~l~~l~~L~~L-~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~i~~~-~~~~l~ 373 (887)
.+.++++|+.| .+.+... +.++.. +..+++|++|++++|.+++... ..+..+++|++|++++| +... ++....
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~-~~l~~~--~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~ 335 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVP-AYLPAV--YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLAS 335 (594)
T ss_dssp HHHTCTTCCEEECCBTCCG-GGGGGG--HHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHH
T ss_pred HHhcCCCcccccCCcccch-hhHHHH--HHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHH
Confidence 67778888887 3433222 223322 3456778888888777654332 23556777777777776 3322 222223
Q ss_pred CCCCCCEEEcCC---------CCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCcccCh
Q 040113 374 NLTQLITLDLSQ---------NSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPN 444 (887)
Q Consensus 374 ~l~~L~~L~L~~---------n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~ 444 (887)
.+++|++|+++. +.+++..... ....+++|+.|.+..+.++..+ +..
T Consensus 336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~-l~~~~~~L~~L~~~~~~l~~~~-----------------------~~~ 391 (594)
T 2p1m_B 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVS-VSMGCPKLESVLYFCRQMTNAA-----------------------LIT 391 (594)
T ss_dssp HCTTCCEEEEECSCTTCSSCSSCCCHHHHHH-HHHHCTTCCEEEEEESCCCHHH-----------------------HHH
T ss_pred hCCCCCEEEEecCcccccccCCCCCHHHHHH-HHHhchhHHHHHHhcCCcCHHH-----------------------HHH
Confidence 467777777733 2333222111 1233566666655555332211 112
Q ss_pred hhhcCCcccEEecc
Q 040113 445 FLKNQHHLMLLDLS 458 (887)
Q Consensus 445 ~l~~~~~L~~L~Ls 458 (887)
....+++|+.|+++
T Consensus 392 l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 392 IARNRPNMTRFRLC 405 (594)
T ss_dssp HHHHCTTCCEEEEE
T ss_pred HHhhCCCcceeEee
Confidence 22357888999988
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=2.8e-26 Score=270.21 Aligned_cols=109 Identities=14% Similarity=0.096 Sum_probs=56.5
Q ss_pred hhCcCCCCeEEcCCCccCCCCCCcccc-cCCcceEEecCCCcccccCCccc-cCCCcccEEEccCCeeeeeCCc-cccCC
Q 040113 544 LCKLDSLEILVLSHNNLSGLLPRCLGS-FSDKLSILDLRANNFFGTIPNTF-MKESRLGMIDLSHNLFQGRIPR-SLINC 620 (887)
Q Consensus 544 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~-~l~~l 620 (887)
+..+++|+.|++++ .+++..+..+.. ++ +|+.|++++|.+++.....+ ..+++|++|++++|.+++.... ....+
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~-~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l 505 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAK-KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKL 505 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCT-TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGG
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhch-hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhC
Confidence 45566777777766 454444444443 33 56677776666654433333 4456666666666666433222 23345
Q ss_pred CCCcEEeCCCCcCCCCCCccc-cCCCCCCEEEccC
Q 040113 621 SKLEFLDIGDNQIRDIFPSWL-GTLPNLTVLILQS 654 (887)
Q Consensus 621 ~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~ 654 (887)
++|++|++++|+++......+ ..+++|+...+..
T Consensus 506 ~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 506 ETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDE 540 (594)
T ss_dssp GGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECS
T ss_pred CCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecC
Confidence 666666666666533222222 2344444444443
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=2.4e-22 Score=211.55 Aligned_cols=212 Identities=24% Similarity=0.220 Sum_probs=168.4
Q ss_pred CCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEe
Q 040113 548 DSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLD 627 (887)
Q Consensus 548 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 627 (887)
++|++|++++|.+++..+..+..++ +|++|++++|++++..+..|..+++|++|++++|.+++..+..|.++++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCT-TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhcccc-CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 4688888888888877776777777 688888888888887777888888888888888888888888888888899999
Q ss_pred CCCCcCCCCCCccccCCCCCCEEEccCCccccc-CCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCc
Q 040113 628 IGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGI-IREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDL 706 (887)
Q Consensus 628 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~ 706 (887)
+++|++.+..+..+..+++|++|++++|++.+. +|..+ ..+++|+.|++++|++++..+ ..+..+..
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~--~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~--------- 174 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF--SNLTNLEHLDLSSNKIQSIYC-TDLRVLHQ--------- 174 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG--GGCTTCCEEECCSSCCCEECG-GGGHHHHT---------
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhh--ccCCCCCEEECCCCCCCcCCH-HHhhhhhh---------
Confidence 999988888777788888999999999988764 34443 678899999999998874333 32322221
Q ss_pred cccccccCCccccccccccccccceeeeeccccccccccCCcee-EEEeecCcCCccChhhhhcccCCCEEeCCCCcccc
Q 040113 707 KYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILT-SIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQG 785 (887)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 785 (887)
.+.+. .|++++|.+++..+..+. ..+|++|+|++|++++
T Consensus 175 ---------------------------------------L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~ 214 (276)
T 2z62_A 175 ---------------------------------------MPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKS 214 (276)
T ss_dssp ---------------------------------------CTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSC
T ss_pred ---------------------------------------ccccceeeecCCCcccccCccccC-CCcccEEECCCCceee
Confidence 11222 799999999976665554 4589999999999998
Q ss_pred cCCccccCCCCCCEEeCCCCcccccCC
Q 040113 786 HIPSCLGNLTNLESLDLSNNNFLGQIP 812 (887)
Q Consensus 786 ~~p~~l~~L~~L~~L~Ls~N~l~~~~p 812 (887)
..+..|+++++|+.|+|++|++.+..|
T Consensus 215 ~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 215 VPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cCHhHhcccccccEEEccCCcccccCC
Confidence 877888999999999999999997654
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=1.1e-21 Score=205.40 Aligned_cols=204 Identities=22% Similarity=0.252 Sum_probs=134.6
Q ss_pred CCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeC
Q 040113 549 SLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDI 628 (887)
Q Consensus 549 ~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 628 (887)
..+.++++++.++ .+|..+. .++++|++++|++++..+..|..+++|++|++++|+++...+..|.++++|++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 4677888888877 4565443 25777777777777666667777777777777777777655556667777777777
Q ss_pred CCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCccc
Q 040113 629 GDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKY 708 (887)
Q Consensus 629 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~ 708 (887)
++|++++..+..|..+++|++|++++|++++..+..+ ..++
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~------------------------------------- 133 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF--DSLT------------------------------------- 133 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT--TTCT-------------------------------------
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh--CcCc-------------------------------------
Confidence 7777776666666666666666666666655433322 2333
Q ss_pred cccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCC
Q 040113 709 LQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIP 788 (887)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p 788 (887)
.|+.|+|++|.+++..+..++.+++|++|+|++|++++..+
T Consensus 134 ---------------------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 134 ---------------------------------------KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp ---------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ---------------------------------------CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 45555555555554444456666677777777777776666
Q ss_pred ccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCccccc
Q 040113 789 SCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGP 834 (887)
Q Consensus 789 ~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g~ 834 (887)
..|.++++|++|+|++|++++..+..+..+++|++|++++|++.+.
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 6667777777777777777766666666777777777777776654
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=3.1e-22 Score=209.90 Aligned_cols=166 Identities=24% Similarity=0.224 Sum_probs=98.7
Q ss_pred hhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCC
Q 040113 202 VEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLK 281 (887)
Q Consensus 202 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 281 (887)
+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|+
T Consensus 81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 160 (272)
T 3rfs_A 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLT 160 (272)
T ss_dssp GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCC
Confidence 34444555555555555555555555666666666666666655555556666666666666666655555556666666
Q ss_pred EEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccC
Q 040113 282 KLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGR 361 (887)
Q Consensus 282 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 361 (887)
+|++++|.+++..+..++.+++|++|++++|++++..+.. ++.+++|+.|++++|.+.+ .+++|+.+++..
T Consensus 161 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~ 231 (272)
T 3rfs_A 161 ELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV--FDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWI 231 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHH
T ss_pred EEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHH--HhCCcCCCEEEccCCCccc-------cCcHHHHHHHHH
Confidence 6666666666555555566666666666666666544433 5566666666666666543 244566666666
Q ss_pred CcCCccCCccccCCC
Q 040113 362 CNFSGRIPSSLRNLT 376 (887)
Q Consensus 362 n~i~~~~~~~l~~l~ 376 (887)
|.++|.+|.+++.+.
T Consensus 232 n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 232 NKHSGVVRNSAGSVA 246 (272)
T ss_dssp HHTGGGBBCTTSCBC
T ss_pred HhCCCcccCcccccC
Confidence 666666666655543
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=2.2e-23 Score=226.50 Aligned_cols=268 Identities=21% Similarity=0.195 Sum_probs=170.0
Q ss_pred CCCccccceEecCCCCcEEEEEcCCCcccccccCCcccccC--CCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCC
Q 040113 86 IDCCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKL--VHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSS 163 (887)
Q Consensus 86 ~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l--~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~ 163 (887)
.-|.+|.++.|+. ..++.++++++.+... .+.++ +++++|++++|.+.+. . ..+..+++|++|++++|.
T Consensus 34 ~vc~~W~~~~~~~--~~~~~l~l~~~~~~~~-----~~~~~~~~~l~~L~l~~n~l~~~-~-~~~~~~~~L~~L~L~~~~ 104 (336)
T 2ast_B 34 GVCKRWYRLASDE--SLWQTLDLTGKNLHPD-----VTGRLLSQGVIAFRCPRSFMDQP-L-AEHFSPFRVQHMDLSNSV 104 (336)
T ss_dssp SSCHHHHHHHTCS--TTSSEEECTTCBCCHH-----HHHHHHHTTCSEEECTTCEECSC-C-CSCCCCBCCCEEECTTCE
T ss_pred HHHHHHHHHhcCc--hhheeeccccccCCHH-----HHHhhhhccceEEEcCCcccccc-c-hhhccCCCCCEEEccCCC
Confidence 4566899998863 3578999998877632 55666 7899999999888764 3 346678888888888888
Q ss_pred CCcc-CCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCC-CCCCC-chhhhcCCCCCCEEEcccC
Q 040113 164 FFGQ-IPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYV-SIRST-IPHNLANLSSLTFLSLHSC 240 (887)
Q Consensus 164 ~~~~-~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n-~~~~~-~~~~l~~l~~L~~L~L~~n 240 (887)
+.+. +|..+..+++|++|++++|.+. ...+..++.+++|++|++++| .+++. ++..+..+++|++|++++|
T Consensus 105 l~~~~~~~~~~~~~~L~~L~L~~~~l~------~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 105 IEVSTLHGILSQCSKLQNLSLEGLRLS------DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp ECHHHHHHHHTTBCCCSEEECTTCBCC------HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred cCHHHHHHHHhhCCCCCEEeCcCcccC------HHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 7655 6777777888888888877622 234566667777777777777 45542 4555666777777777777
Q ss_pred -CCCCc-cccccCCCC-CCcEEeCcCC--CCC-CcchhhccCCCCCCEEEccCCC-CCCccchhhhCCCCCCEEEccCCc
Q 040113 241 -GLQGR-IQSSLGNLS-KLLHLDLSLN--ELL-GELPVSIGNLHSLKKLDLSINN-LSGELPTSIQNLVSLEELDLSFNK 313 (887)
Q Consensus 241 -~l~~~-~~~~l~~l~-~L~~L~Ls~n--~l~-~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~ 313 (887)
.+++. ++..+..++ +|++|++++| .++ +.+|..+..+++|++|++++|. +++..+..+..+++|++|++++|.
T Consensus 179 ~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 179 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp TTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred CCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 66543 455566666 7777777776 344 3455556666677777777766 555556666666667777776664
Q ss_pred -CCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCCccCCcccc
Q 040113 314 -LSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLR 373 (887)
Q Consensus 314 -l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~ 373 (887)
+...... .++++++|+.|++++| ++......+. ..++.|++++|++++..|..++
T Consensus 259 ~~~~~~~~--~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 259 DIIPETLL--ELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp TCCGGGGG--GGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCS
T ss_pred CCCHHHHH--HHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCccc
Confidence 2111111 1455666666666666 3322111111 1244444566666655554443
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=2.8e-22 Score=210.28 Aligned_cols=212 Identities=28% Similarity=0.283 Sum_probs=152.9
Q ss_pred ccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHH
Q 040113 122 SLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANL 201 (887)
Q Consensus 122 ~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~ 201 (887)
....+++|++|++++|.+... +.++.+++|++|++++|.+.+ + ..+..+++|++|++++|.+..+. +..
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~---~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~------~~~ 104 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSV---QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLP------NGV 104 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCC---TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCC------TTT
T ss_pred ccccccceeeeeeCCCCcccc---cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccC------hhH
Confidence 456677788888887777642 347777788888888877755 2 36777778888888877754332 344
Q ss_pred hhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCC
Q 040113 202 VEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLK 281 (887)
Q Consensus 202 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 281 (887)
+..+++|++|++++|.+.+..+..++.+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|+
T Consensus 105 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 184 (272)
T 3rfs_A 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK 184 (272)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCC
Confidence 66777788888888877777676677777888888888877766666677777888888888877766666677777888
Q ss_pred EEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCC
Q 040113 282 KLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRS 353 (887)
Q Consensus 282 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 353 (887)
+|++++|.+++..+..+..+++|++|++++|.+.+. +++|+.++++.|.++|.+|..++.++.
T Consensus 185 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~---------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 185 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT---------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC---------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred EEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc---------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 888888877776666677777888888877766533 446777777777777777777665543
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.7e-22 Score=216.40 Aligned_cols=205 Identities=21% Similarity=0.187 Sum_probs=135.1
Q ss_pred ceEEecCCCcccccCCccc--cCCCcccEEEccCCeeeeeCC----ccccCCCCCcEEeCCCCcCCCCCCccccCCCCCC
Q 040113 575 LSILDLRANNFFGTIPNTF--MKESRLGMIDLSHNLFQGRIP----RSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLT 648 (887)
Q Consensus 575 L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~----~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 648 (887)
|++|++++|++++..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+..+..+..+++|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 4444444444444444444 444555555555555554332 2334566777777777777666666777777777
Q ss_pred EEEccCCccccc--CCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCccccccccCCccccccccccc
Q 040113 649 VLILQSNKFYGI--IREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVAT 726 (887)
Q Consensus 649 ~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (887)
+|++++|++.+. ++.......+++|++|++++|+++ .+|.....-+
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~------------------------------- 220 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALA------------------------------- 220 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHH-------------------------------
T ss_pred EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHH-------------------------------
Confidence 777777776542 222222346778888888888775 2222100000
Q ss_pred cccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcc---cCCCEEeCCCCcccccCCccccCCCCCCEEeCC
Q 040113 727 YDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANL---KGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLS 803 (887)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l---~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls 803 (887)
...+.|++|||++|++++.+|..++.+ ++|++|+|++|+++ .+|..+. ++|+.|||+
T Consensus 221 -----------------~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls 280 (310)
T 4glp_A 221 -----------------AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLS 280 (310)
T ss_dssp -----------------HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECC
T ss_pred -----------------hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECC
Confidence 004568889999999998888777777 59999999999999 6777765 799999999
Q ss_pred CCcccccCCccccCCCCCCeeecccCcccc
Q 040113 804 NNNFLGQIPQQLVELTFLEFFNVSDNYLTG 833 (887)
Q Consensus 804 ~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g 833 (887)
+|++++. |. +..+++|++|++++|+++.
T Consensus 281 ~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 281 SNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 9999974 33 6788999999999999874
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=3e-23 Score=227.39 Aligned_cols=260 Identities=17% Similarity=0.167 Sum_probs=183.1
Q ss_pred EEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCC----CcccccCCcceEEecCCCcccccCCccccCC-----Cc
Q 040113 528 NYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLP----RCLGSFSDKLSILDLRANNFFGTIPNTFMKE-----SR 598 (887)
Q Consensus 528 ~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l-----~~ 598 (887)
.+.++.|.+.|.+|..+...++|++|++++|.+++..+ ..+..++.+|++|++++|++++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35567777777787777777778888888888886666 5666665358888888888887777666654 88
Q ss_pred ccEEEccCCeeeeeCCcc----ccCC-CCCcEEeCCCCcCCCCCCccc----cC-CCCCCEEEccCCcccccCCCCcc--
Q 040113 599 LGMIDLSHNLFQGRIPRS----LINC-SKLEFLDIGDNQIRDIFPSWL----GT-LPNLTVLILQSNKFYGIIREPRI-- 666 (887)
Q Consensus 599 L~~L~Ls~N~l~~~~~~~----l~~l-~~L~~L~L~~N~l~~~~~~~~----~~-l~~L~~L~L~~N~l~~~~~~~~~-- 666 (887)
|++|++++|.+++..+.. +..+ ++|++|++++|++++..+..+ .. .++|++|+|++|++.......+.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 888888888888766654 3444 788899999888887766543 33 35888999998888754322110
Q ss_pred ccCC-CCCCEEEcCCCcCcccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeecccccccccc
Q 040113 667 DCGF-SKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKV 745 (887)
Q Consensus 667 ~~~l-~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (887)
...+ ++|++|++++|++++..+......+ ...
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l-----------------------------------------------~~~ 194 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFL-----------------------------------------------ASI 194 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHH-----------------------------------------------HTS
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHH-----------------------------------------------HhC
Confidence 1233 3888999999988755443311100 001
Q ss_pred CCceeEEEeecCcCCcc----Chhhhhcc-cCCCEEeCCCCcccccCC----ccccCCCCCCEEeCCCCcccccC-----
Q 040113 746 PDILTSIILSSNRFDGM----IPTSIANL-KGLQVLNLDNNNLQGHIP----SCLGNLTNLESLDLSNNNFLGQI----- 811 (887)
Q Consensus 746 ~~~L~~L~Ls~N~l~~~----ip~~l~~l-~~L~~L~Ls~N~l~~~~p----~~l~~L~~L~~L~Ls~N~l~~~~----- 811 (887)
++.|+.|||++|.+++. ++..+..+ ++|++|+|++|.+++..+ ..+..+++|+.|+|++|.+.+..
T Consensus 195 ~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~ 274 (362)
T 3goz_A 195 PASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCK 274 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHH
T ss_pred CCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHH
Confidence 24688899999988863 45556553 589999999998887544 44567788999999999855443
Q ss_pred --CccccCCCCCCeeecccCccccc
Q 040113 812 --PQQLVELTFLEFFNVSDNYLTGP 834 (887)
Q Consensus 812 --p~~l~~L~~L~~L~ls~N~l~g~ 834 (887)
+..+..+++|++||+++|++.+.
T Consensus 275 ~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 275 ALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHhccCCceEEEecCCCcCCCc
Confidence 33567788888999999988765
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=5.7e-21 Score=201.75 Aligned_cols=204 Identities=25% Similarity=0.277 Sum_probs=147.2
Q ss_pred hhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCC
Q 040113 544 LCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKL 623 (887)
Q Consensus 544 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 623 (887)
+.+++++++++++++.++ .+|..+. +.++.|++++|++++..+..|..+++|++|++++|.+++..+. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence 556788999999999987 5665543 3789999999999888888888899999999999998876443 678888
Q ss_pred cEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhccc
Q 040113 624 EFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNT 703 (887)
Q Consensus 624 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~ 703 (887)
++|++++|+++.. |..+..+++|++|++++|++++..+..+ ..+++|+.|++++|+++ .+|...|..
T Consensus 80 ~~L~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~~--~~l~~L~~L~L~~N~l~-~~~~~~~~~--------- 146 (290)
T 1p9a_G 80 GTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGAL--RGLGELQELYLKGNELK-TLPPGLLTP--------- 146 (290)
T ss_dssp CEEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTT--TTCTTCCEEECTTSCCC-CCCTTTTTT---------
T ss_pred CEEECCCCcCCcC-chhhccCCCCCEEECCCCcCcccCHHHH--cCCCCCCEEECCCCCCC-ccChhhccc---------
Confidence 8888888888754 6677788888888888888877655544 56777777777777776 333322111
Q ss_pred CCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcc
Q 040113 704 SDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNL 783 (887)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l 783 (887)
.+.|+.|+|++|++++..+..+..+++|+.|+|++|++
T Consensus 147 ------------------------------------------l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 147 ------------------------------------------TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184 (290)
T ss_dssp ------------------------------------------CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ------------------------------------------ccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcC
Confidence 34566677777777655555566667777777777776
Q ss_pred cccCCccccCCCCCCEEeCCCCcccc
Q 040113 784 QGHIPSCLGNLTNLESLDLSNNNFLG 809 (887)
Q Consensus 784 ~~~~p~~l~~L~~L~~L~Ls~N~l~~ 809 (887)
+ .+|..+..+.+|+.|+|++|++.+
T Consensus 185 ~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 185 Y-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp C-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred C-ccChhhcccccCCeEEeCCCCccC
Confidence 6 556666666667777777776654
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=1.3e-20 Score=199.08 Aligned_cols=203 Identities=23% Similarity=0.220 Sum_probs=113.2
Q ss_pred ccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHH
Q 040113 122 SLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANL 201 (887)
Q Consensus 122 ~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~ 201 (887)
.+.+++++++++++++.++. +|..+. +++++|+|++|.+.+..|..+..+++|++|++++|.+..+..
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~--ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------- 72 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA--LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-------- 72 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS--CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--------
T ss_pred cccccCCccEEECCCCCCCc--CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--------
Confidence 45667788888888888774 565554 678888888888877777777788888888888877544321
Q ss_pred hhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCC
Q 040113 202 VEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLK 281 (887)
Q Consensus 202 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 281 (887)
.+.+++|++|++++|.+. .+|..+..+++|++|++++|++++..+..|.++++|++|++++|++.+..+..|..+++|+
T Consensus 73 ~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 73 DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence 134555555555555554 2344444555555555555555544444455555555555555555444334444444555
Q ss_pred EEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCC
Q 040113 282 KLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKF 340 (887)
Q Consensus 282 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l 340 (887)
+|++++|++++..+..+..+++|++|++++|+++ .+|.. +...++|+.+++++|.+
T Consensus 152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~--~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG--FFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTT--TTTTCCCSEEECCSCCB
T ss_pred EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChh--hcccccCCeEEeCCCCc
Confidence 5555555444333333444444444444444444 33333 33333444444444433
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=1.4e-22 Score=224.45 Aligned_cols=243 Identities=16% Similarity=0.183 Sum_probs=121.2
Q ss_pred CccccCCCCCCEEECCCCCCCccCC----ccccCCCCCcEEEccCCCCCCccccCCChH-------HHhhcCCCCCEEEc
Q 040113 145 PSEIINLSRLSYLNLSHSSFFGQIP----SEILELVNLVSLDLSLNSGYGLELQKPNFA-------NLVEKLSNLETLDL 213 (887)
Q Consensus 145 p~~~~~l~~L~~L~Ls~n~~~~~~p----~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~-------~~~~~l~~L~~L~L 213 (887)
+..+..+++|++|+|++|.+.+..+ ..+..+++|++|++++|.+..+. +.+| ..+..+++|++|++
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~---~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVK---DEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCG---GGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccc---cchhHHHHHHHHHHhhCCcccEEEC
Confidence 3344444555555555554443322 22334455555555544322221 1112 22345555555555
Q ss_pred cCCCCCC----CchhhhcCCCCCCEEEcccCCCCCcccccc----CCC---------CCCcEEeCcCCCCC-Ccch---h
Q 040113 214 GYVSIRS----TIPHNLANLSSLTFLSLHSCGLQGRIQSSL----GNL---------SKLLHLDLSLNELL-GELP---V 272 (887)
Q Consensus 214 ~~n~~~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l----~~l---------~~L~~L~Ls~n~l~-~~~p---~ 272 (887)
++|.+.. .++..+..+++|++|++++|.+++..+..+ ..+ ++|++|++++|.+. +.++ .
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 5555554 244455555555555555555543222222 222 56666666666654 2233 3
Q ss_pred hccCCCCCCEEEccCCCCCC-----ccchhhhCCCCCCEEEccCCcCC----CCCCchhhccCCCCccEEEccCCCCCCc
Q 040113 273 SIGNLHSLKKLDLSINNLSG-----ELPTSIQNLVSLEELDLSFNKLS----GEFPWSIVIGNFTQLQSLDFTSNKFSGE 343 (887)
Q Consensus 273 ~l~~l~~L~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 343 (887)
.+..+++|++|++++|.++. ..+..+..+++|++|+|++|.++ +.++.. +..+++|++|++++|.+++.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~--l~~~~~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA--LKSWPNLRELGLNDCLLSAR 259 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH--GGGCTTCCEEECTTCCCCHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH--HccCCCcCEEECCCCCCchh
Confidence 44455566666666665552 12224555666666666666653 333433 45556666666666665543
Q ss_pred ----ccccc--CCCCCccEEEccCCcCCc----cCCccc-cCCCCCCEEEcCCCCCcccc
Q 040113 344 ----LHASI--GNLRSLEVLAIGRCNFSG----RIPSSL-RNLTQLITLDLSQNSYRGTM 392 (887)
Q Consensus 344 ----~~~~l--~~l~~L~~L~L~~n~i~~----~~~~~l-~~l~~L~~L~L~~n~l~~~~ 392 (887)
++..+ +.+++|++|++++|.+++ .+|..+ .++++|++|++++|.+++..
T Consensus 260 ~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 260 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 33444 225666666666666655 244444 44566666666666665544
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=1.2e-20 Score=195.26 Aligned_cols=192 Identities=23% Similarity=0.265 Sum_probs=126.8
Q ss_pred CCccccceEecCCCCcEEEEEcCCCcccccccCCcccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCc
Q 040113 87 DCCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFG 166 (887)
Q Consensus 87 ~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~ 166 (887)
+||.|.|++|.. ..+.++++++.+.. ++. .+. +.+++|+|++|.+.+. .+..|+++++|++|+|++|.+.+
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~~-~p~--~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~ 73 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLDS-VPS--GIP--ADTEKLDLQSTGLATL-SDATFRGLTKLTWLNLDYNQLQT 73 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCSS-CCS--CCC--TTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCC
T ss_pred cCCCCCceEcCC---CCeEEecCCCCccc-cCC--CCC--CCCCEEEccCCCcCcc-CHhHhcCcccCCEEECCCCcCCc
Confidence 688999999953 24468888887763 222 232 5777888888887765 45567777778888887777776
Q ss_pred cCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCcc
Q 040113 167 QIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRI 246 (887)
Q Consensus 167 ~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 246 (887)
..|..+..+++|++|++++|. +++..+..+..+++|++|++++|.+++..
T Consensus 74 ~~~~~~~~l~~L~~L~L~~n~------------------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 123 (251)
T 3m19_A 74 LSAGVFDDLTELGTLGLANNQ------------------------------LASLPLGVFDHLTQLDKLYLGGNQLKSLP 123 (251)
T ss_dssp CCTTTTTTCTTCCEEECTTSC------------------------------CCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred cCHhHhccCCcCCEEECCCCc------------------------------ccccChhHhcccCCCCEEEcCCCcCCCcC
Confidence 666556666666666666665 44444444555666666666666666555
Q ss_pred ccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCC
Q 040113 247 QSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGE 317 (887)
Q Consensus 247 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 317 (887)
+..+..+++|++|++++|.+.+..+..|+.+++|++|++++|.+++..+..+..+++|++|++++|++.+.
T Consensus 124 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 124 SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred hhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 55566666666666666666655555666667777777777777666566666777777777777776654
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=3.4e-21 Score=197.91 Aligned_cols=196 Identities=19% Similarity=0.218 Sum_probs=125.0
Q ss_pred cceEEecCCCcccccCCccccCCCcccEEEccCCe-eeeeCCccccCCCCCcEEeCCC-CcCCCCCCccccCCCCCCEEE
Q 040113 574 KLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNL-FQGRIPRSLINCSKLEFLDIGD-NQIRDIFPSWLGTLPNLTVLI 651 (887)
Q Consensus 574 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~ 651 (887)
+|++|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67788888888877777777777888888888886 7766666777778888888877 777777667777777777777
Q ss_pred ccCCcccccCCCCccccCCCCCC---EEEcCCC-cCcccCChhhhhccccchhcccCCccccccccCCcccccccccccc
Q 040113 652 LQSNKFYGIIREPRIDCGFSKLR---IIDLSNN-RFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATY 727 (887)
Q Consensus 652 L~~N~l~~~~~~~~~~~~l~~L~---~L~Ls~N-~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (887)
+++|++++. |. + ..+++|+ .|++++| .++ .+|...|..
T Consensus 112 l~~n~l~~l-p~-~--~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~--------------------------------- 153 (239)
T 2xwt_C 112 IFNTGLKMF-PD-L--TKVYSTDIFFILEITDNPYMT-SIPVNAFQG--------------------------------- 153 (239)
T ss_dssp EEEECCCSC-CC-C--TTCCBCCSEEEEEEESCTTCC-EECTTTTTT---------------------------------
T ss_pred CCCCCCccc-cc-c--ccccccccccEEECCCCcchh-hcCcccccc---------------------------------
Confidence 777777663 32 2 4455555 6666666 554 233221111
Q ss_pred ccceeeeeccccccccccCCcee-EEEeecCcCCccChhhhhcccCCCEEeCCCCc-ccccCCccccCC-CCCCEEeCCC
Q 040113 728 DYSLKMNNKGQIMTYDKVPDILT-SIILSSNRFDGMIPTSIANLKGLQVLNLDNNN-LQGHIPSCLGNL-TNLESLDLSN 804 (887)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~L-~~L~~L~Ls~ 804 (887)
.+.|+ .|++++|+++ .+|......++|+.|+|++|+ +++..+..|.++ ++|+.||+++
T Consensus 154 ------------------l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 154 ------------------LCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp ------------------TBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred ------------------hhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence 23455 6666666666 333322222566666666663 665555666666 6666666666
Q ss_pred CcccccCCccccCCCCCCeeecccC
Q 040113 805 NNFLGQIPQQLVELTFLEFFNVSDN 829 (887)
Q Consensus 805 N~l~~~~p~~l~~L~~L~~L~ls~N 829 (887)
|++++..+. .+.+|+.|+++++
T Consensus 215 N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 215 TSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CCCCCCCCT---TCTTCSEEECTTC
T ss_pred CccccCChh---HhccCceeeccCc
Confidence 666643322 4555666666554
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=1.5e-21 Score=212.06 Aligned_cols=251 Identities=21% Similarity=0.260 Sum_probs=183.1
Q ss_pred CCCeEECCCCCCCCCCCCccccCC--CCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcC
Q 040113 128 HLEWLNLAFNDFKSSEIPSEIINL--SRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKL 205 (887)
Q Consensus 128 ~L~~L~L~~n~~~~~~lp~~~~~l--~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l 205 (887)
.++.++++++.+. +..+..+ +++++|++++|.+.+..+. +..+++|++|++++|.+. ...++..+..+
T Consensus 48 ~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~-----~~~~~~~~~~~ 117 (336)
T 2ast_B 48 LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIE-----VSTLHGILSQC 117 (336)
T ss_dssp TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEEC-----HHHHHHHHTTB
T ss_pred hheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcC-----HHHHHHHHhhC
Confidence 4789999998875 4556777 8999999999998776654 668899999999998621 12267778888
Q ss_pred CCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccC-CCCCc-cccccCCCCCCcEEeCcCC-CCCCc-chhhccCCC-CC
Q 040113 206 SNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSC-GLQGR-IQSSLGNLSKLLHLDLSLN-ELLGE-LPVSIGNLH-SL 280 (887)
Q Consensus 206 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~Ls~n-~l~~~-~p~~l~~l~-~L 280 (887)
++|++|++++|.+.+..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|
T Consensus 118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 89999999988888878888888888888888888 56653 5666777888888888888 77654 566677888 88
Q ss_pred CEEEccCC--CCC-CccchhhhCCCCCCEEEccCCc-CCCCCCchhhccCCCCccEEEccCCC-CCCccccccCCCCCcc
Q 040113 281 KKLDLSIN--NLS-GELPTSIQNLVSLEELDLSFNK-LSGEFPWSIVIGNFTQLQSLDFTSNK-FSGELHASIGNLRSLE 355 (887)
Q Consensus 281 ~~L~L~~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~ 355 (887)
++|++++| .++ +.++..+..+++|++|++++|. +++..+.. ++.+++|++|++++|. +.......++.+++|+
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 275 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE--FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK 275 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG--GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH--HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCC
Confidence 88888888 455 4566677778888888888887 55555554 6777888888888874 3322223566777888
Q ss_pred EEEccCCcCCccCCccccCC-CCCCEEEcCCCCCccccch
Q 040113 356 VLAIGRCNFSGRIPSSLRNL-TQLITLDLSQNSYRGTMEL 394 (887)
Q Consensus 356 ~L~L~~n~i~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~ 394 (887)
+|++++| ++.. .+..+ ..++.|++++|.+++..+.
T Consensus 276 ~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 276 TLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp EEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred EEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCC
Confidence 8888777 3322 22222 2355556777777766554
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=1.4e-20 Score=193.36 Aligned_cols=204 Identities=20% Similarity=0.289 Sum_probs=166.8
Q ss_pred cCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCc-ccccCCccccCCCcccEEEccC-CeeeeeCCcc
Q 040113 539 EIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANN-FFGTIPNTFMKESRLGMIDLSH-NLFQGRIPRS 616 (887)
Q Consensus 539 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~ 616 (887)
.+|. + .++|++|++++|++++..+..+..++ +|++|++++|+ +++..+..|..+++|++|++++ |++++..+..
T Consensus 25 ~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~-~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 25 RIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLP-NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp SCCC-C--CTTCCEEEEESCCCSEECTTTTTTCT-TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccCC-C--CCcccEEEEeCCcceEECHHHccCCC-CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 4554 3 34788999999998877777888887 79999999997 8877777888999999999998 8999888888
Q ss_pred ccCCCCCcEEeCCCCcCCCCCCccccCCCCCC---EEEccCC-cccccCCCCccccCCCCCC-EEEcCCCcCcccCChhh
Q 040113 617 LINCSKLEFLDIGDNQIRDIFPSWLGTLPNLT---VLILQSN-KFYGIIREPRIDCGFSKLR-IIDLSNNRFTGKLPSKS 691 (887)
Q Consensus 617 l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~---~L~L~~N-~l~~~~~~~~~~~~l~~L~-~L~Ls~N~l~~~ip~~~ 691 (887)
|.++++|++|++++|++++. |. +..+++|+ +|++++| ++.+..+..+ .++++|+ .|++++|+++ .+|...
T Consensus 101 f~~l~~L~~L~l~~n~l~~l-p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~--~~l~~L~~~L~l~~n~l~-~i~~~~ 175 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKMF-PD-LTKVYSTDIFFILEITDNPYMTSIPVNAF--QGLCNETLTLKLYNNGFT-SVQGYA 175 (239)
T ss_dssp EECCTTCCEEEEEEECCCSC-CC-CTTCCBCCSEEEEEEESCTTCCEECTTTT--TTTBSSEEEEECCSCCCC-EECTTT
T ss_pred hCCCCCCCEEeCCCCCCccc-cc-cccccccccccEEECCCCcchhhcCcccc--cchhcceeEEEcCCCCCc-ccCHhh
Confidence 99999999999999999884 54 88888888 9999999 8887765544 6788999 9999999987 666542
Q ss_pred hhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCc-CCccChhhhhcc
Q 040113 692 FLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNR-FDGMIPTSIANL 770 (887)
Q Consensus 692 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~-l~~~ip~~l~~l 770 (887)
|. .+.|+.|++++|. +++..+..|..+
T Consensus 176 ~~----------------------------------------------------~~~L~~L~L~~n~~l~~i~~~~~~~l 203 (239)
T 2xwt_C 176 FN----------------------------------------------------GTKLDAVYLNKNKYLTVIDKDAFGGV 203 (239)
T ss_dssp TT----------------------------------------------------TCEEEEEECTTCTTCCEECTTTTTTC
T ss_pred cC----------------------------------------------------CCCCCEEEcCCCCCcccCCHHHhhcc
Confidence 21 2468999999995 997778889999
Q ss_pred -cCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCc
Q 040113 771 -KGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNN 806 (887)
Q Consensus 771 -~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~ 806 (887)
++|+.|++++|++++ +|.. .+++|+.|+++++.
T Consensus 204 ~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 204 YSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp SBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred ccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence 999999999999995 4543 67899999998874
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=1.5e-21 Score=213.85 Aligned_cols=184 Identities=20% Similarity=0.248 Sum_probs=87.5
Q ss_pred CCCCEEEccCCCCCCCchhhh----cCC-CCCCEEEcccCCCCCcccccc----CC-CCCCcEEeCcCCCCCCc----ch
Q 040113 206 SNLETLDLGYVSIRSTIPHNL----ANL-SSLTFLSLHSCGLQGRIQSSL----GN-LSKLLHLDLSLNELLGE----LP 271 (887)
Q Consensus 206 ~~L~~L~L~~n~~~~~~~~~l----~~l-~~L~~L~L~~n~l~~~~~~~l----~~-l~~L~~L~Ls~n~l~~~----~p 271 (887)
++|++|++++|.+++..+..+ ..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+.+. ++
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 455555555555544443322 222 455555555555544333222 22 24555555555555432 22
Q ss_pred hhccCCC-CCCEEEccCCCCCCccchhh----hCC-CCCCEEEccCCcCCCC----CCchhhccC-CCCccEEEccCCCC
Q 040113 272 VSIGNLH-SLKKLDLSINNLSGELPTSI----QNL-VSLEELDLSFNKLSGE----FPWSIVIGN-FTQLQSLDFTSNKF 340 (887)
Q Consensus 272 ~~l~~l~-~L~~L~L~~n~l~~~~~~~l----~~l-~~L~~L~L~~n~l~~~----~~~~~~~~~-l~~L~~L~L~~n~l 340 (887)
..+..++ +|++|++++|.+++..+..+ ..+ ++|++|++++|.+.+. ++.. +.. .++|++|++++|.+
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~--l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI--FSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH--HHHSCTTCCEEECCSSCC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHH--HhcCCCCceEEECcCCCC
Confidence 3333443 56666666665554444322 233 3566666666655532 1111 222 23566666666655
Q ss_pred CCccc----cccCCCCCccEEEccCCcCCcc-------CCccccCCCCCCEEEcCCCCCccc
Q 040113 341 SGELH----ASIGNLRSLEVLAIGRCNFSGR-------IPSSLRNLTQLITLDLSQNSYRGT 391 (887)
Q Consensus 341 ~~~~~----~~l~~l~~L~~L~L~~n~i~~~-------~~~~l~~l~~L~~L~L~~n~l~~~ 391 (887)
++..+ ..+..+++|++|++++|.+.+. ++..+..+++|++|++++|.+...
T Consensus 238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 54322 2234455566666666653221 223444555666666666665544
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=1.1e-21 Score=217.30 Aligned_cols=245 Identities=20% Similarity=0.192 Sum_probs=177.8
Q ss_pred ccccCCCCCeEECCCCCCCCCC---CCccccCCCCCCEEECCCC---CCCccCCccc-------cCCCCCcEEEccCCCC
Q 040113 122 SLFKLVHLEWLNLAFNDFKSSE---IPSEIINLSRLSYLNLSHS---SFFGQIPSEI-------LELVNLVSLDLSLNSG 188 (887)
Q Consensus 122 ~l~~l~~L~~L~L~~n~~~~~~---lp~~~~~l~~L~~L~Ls~n---~~~~~~p~~l-------~~l~~L~~L~l~~n~~ 188 (887)
.+..+++|++|+|++|.++... ++..+..+++|++|+|++| ++.+.+|..+ ..+++|++|++++|.+
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 5667778888888888776531 2234667888888888885 3445566555 6788888888888874
Q ss_pred CCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhh----cCC---------CCCCEEEcccCCCC-Cccc---cccC
Q 040113 189 YGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNL----ANL---------SSLTFLSLHSCGLQ-GRIQ---SSLG 251 (887)
Q Consensus 189 ~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l----~~l---------~~L~~L~L~~n~l~-~~~~---~~l~ 251 (887)
.... ...++..+..+++|++|++++|.+....+..+ ..+ ++|++|++++|+++ +.++ ..+.
T Consensus 107 ~~~~--~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 107 GPTA--QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184 (386)
T ss_dssp CTTT--HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred CHHH--HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence 3211 01356778888888888888888865444333 333 88888888888887 3344 4566
Q ss_pred CCCCCcEEeCcCCCCCC-----cchhhccCCCCCCEEEccCCCCC----CccchhhhCCCCCCEEEccCCcCCCC----C
Q 040113 252 NLSKLLHLDLSLNELLG-----ELPVSIGNLHSLKKLDLSINNLS----GELPTSIQNLVSLEELDLSFNKLSGE----F 318 (887)
Q Consensus 252 ~l~~L~~L~Ls~n~l~~-----~~p~~l~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~----~ 318 (887)
.+++|++|++++|.+.. ..+..+..+++|++|+|++|.++ +.+|..+..+++|++|+|++|.+++. +
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 264 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence 78889999999988862 23447788889999999999885 56778888888999999999988754 3
Q ss_pred CchhhccCCCCccEEEccCCCCCC----cccccc-CCCCCccEEEccCCcCCccC
Q 040113 319 PWSIVIGNFTQLQSLDFTSNKFSG----ELHASI-GNLRSLEVLAIGRCNFSGRI 368 (887)
Q Consensus 319 ~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~l-~~l~~L~~L~L~~n~i~~~~ 368 (887)
+.....+.+++|+.|++++|.+++ .+|..+ .++++|++|++++|.+++..
T Consensus 265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 333111448889999999999887 467666 56889999999999988665
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=8.2e-20 Score=194.91 Aligned_cols=173 Identities=25% Similarity=0.281 Sum_probs=93.9
Q ss_pred ccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHH
Q 040113 122 SLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANL 201 (887)
Q Consensus 122 ~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~ 201 (887)
....+++|++|++++|.+.. +| .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+..++ .
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~~--------~ 102 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNVS--------A 102 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCCG--------G
T ss_pred cHHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCch--------h
Confidence 34567777888888777764 33 477777778888877777543 33 667777777777777643321 3
Q ss_pred hhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCC
Q 040113 202 VEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLK 281 (887)
Q Consensus 202 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 281 (887)
+..+++|++|++++|.+.+.. .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+ +..+++|+
T Consensus 103 ~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~ 176 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLT 176 (308)
T ss_dssp GTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred hcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCC
Confidence 455555555555555554432 14555555555555555543322 4444555555555554443221 44444444
Q ss_pred EEEccCCCCCCccchhhhCCCCCCEEEccCCcCC
Q 040113 282 KLDLSINNLSGELPTSIQNLVSLEELDLSFNKLS 315 (887)
Q Consensus 282 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 315 (887)
+|++++|.+++..+ +..+++|++|++++|+++
T Consensus 177 ~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 177 TLKADDNKISDISP--LASLPNLIEVHLKNNQIS 208 (308)
T ss_dssp EEECCSSCCCCCGG--GGGCTTCCEEECTTSCCC
T ss_pred EEECCCCccCcChh--hcCCCCCCEEEccCCccC
Confidence 44444444443222 444444444444444444
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=1.7e-20 Score=200.79 Aligned_cols=202 Identities=22% Similarity=0.193 Sum_probs=120.0
Q ss_pred CCCCEEEccCCCCCCCchhhh--cCCCCCCEEEcccCCCCCccc----cccCCCCCCcEEeCcCCCCCCcchhhccCCCC
Q 040113 206 SNLETLDLGYVSIRSTIPHNL--ANLSSLTFLSLHSCGLQGRIQ----SSLGNLSKLLHLDLSLNELLGELPVSIGNLHS 279 (887)
Q Consensus 206 ~~L~~L~L~~n~~~~~~~~~l--~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 279 (887)
++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 446666666666666665555 566666666666666655333 23345666666666666666555566666666
Q ss_pred CCEEEccCCCCCCc--cc--hhhhCCCCCCEEEccCCcCCCCCCch--hhccCCCCccEEEccCCCCCCccccccCCC--
Q 040113 280 LKKLDLSINNLSGE--LP--TSIQNLVSLEELDLSFNKLSGEFPWS--IVIGNFTQLQSLDFTSNKFSGELHASIGNL-- 351 (887)
Q Consensus 280 L~~L~L~~n~l~~~--~~--~~l~~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-- 351 (887)
|++|++++|++.+. ++ ..++.+++|++|++++|+++. ++.. ..++.+++|++|++++|++++..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 66666666665532 11 122456666666666666642 2210 013455666777777776666556555554
Q ss_pred -CCccEEEccCCcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCccc
Q 040113 352 -RSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLS 415 (887)
Q Consensus 352 -~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~ 415 (887)
++|++|++++|+++ .+|..+. ++|++|++++|++++... +..+++|+.|++++|+++
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~----~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ----PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC----TTSCCCCSCEECSSTTTS
T ss_pred cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch----hhhCCCccEEECcCCCCC
Confidence 46777777777766 4555543 577777777777765422 355677777777777554
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=1.8e-19 Score=186.43 Aligned_cols=180 Identities=21% Similarity=0.205 Sum_probs=156.3
Q ss_pred ccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCc
Q 040113 505 LLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANN 584 (887)
Q Consensus 505 L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~ 584 (887)
.+.++++++.++......+..++.+++++|.+.+..+..+..+++|++|++++|.+++..|..+..++ +|++|++++|+
T Consensus 16 ~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~ 94 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT-ELGTLGLANNQ 94 (251)
T ss_dssp GTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSC
T ss_pred CeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC-cCCEEECCCCc
Confidence 44555555555544444456777788888888887788899999999999999999998888899988 79999999999
Q ss_pred ccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC
Q 040113 585 FFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREP 664 (887)
Q Consensus 585 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 664 (887)
+++..+..|..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++.+..+..
T Consensus 95 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 174 (251)
T 3m19_A 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHH
Confidence 99888889999999999999999999888888999999999999999999998888999999999999999999887655
Q ss_pred ccccCCCCCCEEEcCCCcCcccC
Q 040113 665 RIDCGFSKLRIIDLSNNRFTGKL 687 (887)
Q Consensus 665 ~~~~~l~~L~~L~Ls~N~l~~~i 687 (887)
+ ..+++|+.|++++|++.+..
T Consensus 175 ~--~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 175 F--DRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp T--TTCTTCCEEECCSCCBCTTS
T ss_pred H--hCCCCCCEEEeeCCceeCCc
Confidence 5 67899999999999998773
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=2.9e-20 Score=202.54 Aligned_cols=242 Identities=19% Similarity=0.182 Sum_probs=157.3
Q ss_pred cEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCC-ccccCCCcccE-EEc
Q 040113 527 VNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIP-NTFMKESRLGM-IDL 604 (887)
Q Consensus 527 ~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~-L~L 604 (887)
..++.++++++ .+|..+ .+++++|+|++|+|+...+..|.+++ +|++|+|++|++.+.+| .+|.++++++. +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~-~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCT-TCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCC-CCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45566666655 455544 35677788888877755555677777 68888888887765444 46777776654 555
Q ss_pred cCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCC-cccccCCCCccccCCCCCCEEEcCCCcC
Q 040113 605 SHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSN-KFYGIIREPRIDCGFSKLRIIDLSNNRF 683 (887)
Q Consensus 605 s~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 683 (887)
++|+++...|..|.++++|++|++++|++....+..+....++..|++.++ ++....+..+ ......++.|++++|++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f-~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF-VGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSS-TTSBSSCEEEECCSSCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccch-hhcchhhhhhccccccc
Confidence 667777777777777778888888888777776666666667777777553 4444333322 12224577777777777
Q ss_pred cccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeec-CcCCcc
Q 040113 684 TGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSS-NRFDGM 762 (887)
Q Consensus 684 ~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~-N~l~~~ 762 (887)
+ .+|...|. ...++.|++++ |.++..
T Consensus 167 ~-~i~~~~f~----------------------------------------------------~~~L~~l~l~~~n~l~~i 193 (350)
T 4ay9_X 167 Q-EIHNSAFN----------------------------------------------------GTQLDELNLSDNNNLEEL 193 (350)
T ss_dssp C-EECTTSST----------------------------------------------------TEEEEEEECTTCTTCCCC
T ss_pred c-CCChhhcc----------------------------------------------------ccchhHHhhccCCcccCC
Confidence 6 44433211 23477888875 555544
Q ss_pred ChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCc
Q 040113 763 IPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNY 830 (887)
Q Consensus 763 ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~ 830 (887)
.+..|+.+++|++|||++|+|+...+.. +.+|+.|.+.++.-...+|. +.++++|+.++++++.
T Consensus 194 ~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 194 PNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYPS 257 (350)
T ss_dssp CTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCHH
T ss_pred CHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCC-chhCcChhhCcCCCCc
Confidence 3456788888888888888888544444 44555665555554456663 7888888888887653
No 95
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=4.3e-19 Score=189.33 Aligned_cols=105 Identities=26% Similarity=0.328 Sum_probs=47.7
Q ss_pred ccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhc
Q 040113 148 IINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLA 227 (887)
Q Consensus 148 ~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~ 227 (887)
+..+++|++|++++|.+.. +| .+..+++|++|++++|.+..+. . +..+++|++|++++|.+.+. ..+.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~-------~-~~~l~~L~~L~L~~n~l~~~--~~~~ 104 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLA-------P-LKNLTKITELELSGNPLKNV--SAIA 104 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG-------G-GTTCCSCCEEECCSCCCSCC--GGGT
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCCh-------h-HccCCCCCEEEccCCcCCCc--hhhc
Confidence 3445666666666666532 33 3555555555555555532221 1 44444444444444444332 1244
Q ss_pred CCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCC
Q 040113 228 NLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNEL 266 (887)
Q Consensus 228 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 266 (887)
.+++|++|++++|.+++. + .+..+++|++|++++|.+
T Consensus 105 ~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l 141 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQI 141 (308)
T ss_dssp TCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCC
T ss_pred CCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCcc
Confidence 444444444444444332 1 133444444444444443
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=3.5e-19 Score=193.94 Aligned_cols=244 Identities=17% Similarity=0.155 Sum_probs=193.6
Q ss_pred ccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCC-cccccCCcceEEecCCC
Q 040113 505 LLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPR-CLGSFSDKLSILDLRAN 583 (887)
Q Consensus 505 L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~~L~~L~L~~N 583 (887)
-++++.+++.++.++...+..+++|++++|++....+..|.++++|++|+|++|++.+.+|. .|.+++..++.+.+++|
T Consensus 11 ~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 11 NRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 35678888888866555578899999999999877677899999999999999998776664 57777743445777889
Q ss_pred cccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCC-CcCCCCCCccccCCC-CCCEEEccCCcccccC
Q 040113 584 NFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGD-NQIRDIFPSWLGTLP-NLTVLILQSNKFYGII 661 (887)
Q Consensus 584 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~-N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~ 661 (887)
++++..|..|..+++|++|++++|++.+..+..+.....+..|++.+ +++....+..|..+. .++.|++++|+++.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~ 170 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence 99999999999999999999999999988777788888899999965 678877777787775 6889999999998765
Q ss_pred CCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeecccccc
Q 040113 662 REPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMT 741 (887)
Q Consensus 662 ~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (887)
+..+ ...+|+.+++++|...+.+|.+.|..
T Consensus 171 ~~~f---~~~~L~~l~l~~~n~l~~i~~~~f~~----------------------------------------------- 200 (350)
T 4ay9_X 171 NSAF---NGTQLDELNLSDNNNLEELPNDVFHG----------------------------------------------- 200 (350)
T ss_dssp TTSS---TTEEEEEEECTTCTTCCCCCTTTTTT-----------------------------------------------
T ss_pred hhhc---cccchhHHhhccCCcccCCCHHHhcc-----------------------------------------------
Confidence 5443 45789999998766556888765433
Q ss_pred ccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCc
Q 040113 742 YDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNN 806 (887)
Q Consensus 742 ~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~ 806 (887)
.+.|+.|||++|+|+...+.. +.+|+.|.+.++.-...+|. +.++++|+.++++++.
T Consensus 201 ----l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 201 ----ASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYPS 257 (350)
T ss_dssp ----EECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCHH
T ss_pred ----CcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCC-chhCcChhhCcCCCCc
Confidence 356889999999999554444 45666666665554557774 8899999999998764
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=2.2e-19 Score=205.38 Aligned_cols=190 Identities=24% Similarity=0.399 Sum_probs=135.2
Q ss_pred CCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEe
Q 040113 548 DSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLD 627 (887)
Q Consensus 548 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 627 (887)
.+|+.|++++|.+++ +|..+. + +|++|++++|+++ .+| ..+++|++|++++|++++ +|. +.+ +|++|+
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l~--~-~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNLP--P-QITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD 126 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCCC--T-TCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred CCccEEEeCCCCCCc-cCHhHc--C-CCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence 478888888888876 666553 3 6888888888887 455 346788888888888886 555 554 788888
Q ss_pred CCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCcc
Q 040113 628 IGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLK 707 (887)
Q Consensus 628 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~ 707 (887)
|++|+++++ |. .+++|+.|++++|+++++ |. .+++|+.|++++|++++ +|. +
T Consensus 127 Ls~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l-p~-----~l~~L~~L~Ls~N~L~~-lp~--l--------------- 178 (571)
T 3cvr_A 127 VDNNQLTML-PE---LPALLEYINADNNQLTML-PE-----LPTSLEVLSVRNNQLTF-LPE--L--------------- 178 (571)
T ss_dssp CCSSCCSCC-CC---CCTTCCEEECCSSCCSCC-CC-----CCTTCCEEECCSSCCSC-CCC--C---------------
T ss_pred CCCCcCCCC-CC---cCccccEEeCCCCccCcC-CC-----cCCCcCEEECCCCCCCC-cch--h---------------
Confidence 888888874 44 577888888888887763 22 35778888888887764 542 1
Q ss_pred ccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCC-------CEEeCCC
Q 040113 708 YLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGL-------QVLNLDN 780 (887)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L-------~~L~Ls~ 780 (887)
.++|+.|+|++|+|+ .+|. +.. +| +.|+|++
T Consensus 179 --------------------------------------~~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~ 216 (571)
T 3cvr_A 179 --------------------------------------PESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRE 216 (571)
T ss_dssp --------------------------------------CTTCCEEECCSSCCS-SCCC-CC----------CCEEEECCS
T ss_pred --------------------------------------hCCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCC
Confidence 134677788888777 5555 543 56 7788888
Q ss_pred CcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCC
Q 040113 781 NNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTF 820 (887)
Q Consensus 781 N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~ 820 (887)
|+|+ .+|..+..+++|+.|+|++|++++.+|..+..++.
T Consensus 217 N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 217 NRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp SCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred Ccce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 8777 46777777788888888888888777777766543
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=3.8e-19 Score=203.49 Aligned_cols=183 Identities=23% Similarity=0.387 Sum_probs=155.0
Q ss_pred cceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEcc
Q 040113 574 KLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQ 653 (887)
Q Consensus 574 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 653 (887)
+++.|++++|++++ +|..+ .++|++|++++|+++ .+| ..+++|++|++++|++++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 69999999999987 56544 378999999999999 566 457899999999999999 465 655 99999999
Q ss_pred CCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCccccccccCCccccccccccccccceee
Q 040113 654 SNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKM 733 (887)
Q Consensus 654 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (887)
+|+++++ |. .+++|+.|++++|.+++ +|..
T Consensus 129 ~N~l~~l-p~-----~l~~L~~L~Ls~N~l~~-lp~~------------------------------------------- 158 (571)
T 3cvr_A 129 NNQLTML-PE-----LPALLEYINADNNQLTM-LPEL------------------------------------------- 158 (571)
T ss_dssp SSCCSCC-CC-----CCTTCCEEECCSSCCSC-CCCC-------------------------------------------
T ss_pred CCcCCCC-CC-----cCccccEEeCCCCccCc-CCCc-------------------------------------------
Confidence 9999984 33 47899999999999984 5531
Q ss_pred eeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCC-------CEEeCCCCc
Q 040113 734 NNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNL-------ESLDLSNNN 806 (887)
Q Consensus 734 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L-------~~L~Ls~N~ 806 (887)
++.|+.|+|++|.|++ +|. +. ++|++|+|++|+|+ .+|. |.. +| +.|+|++|+
T Consensus 159 ------------l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~ 218 (571)
T 3cvr_A 159 ------------PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENR 218 (571)
T ss_dssp ------------CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSC
T ss_pred ------------CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCc
Confidence 4578999999999997 776 66 89999999999999 6777 665 77 999999999
Q ss_pred ccccCCccccCCCCCCeeecccCcccccCCCC
Q 040113 807 FLGQIPQQLVELTFLEFFNVSDNYLTGPIPQG 838 (887)
Q Consensus 807 l~~~~p~~l~~L~~L~~L~ls~N~l~g~iP~~ 838 (887)
++ .+|..+..+++|++|++++|+++|.+|..
T Consensus 219 l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 219 IT-HIPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp CC-CCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred ce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 99 58888888999999999999999988853
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=1.1e-18 Score=175.06 Aligned_cols=106 Identities=18% Similarity=0.243 Sum_probs=58.7
Q ss_pred CeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCC
Q 040113 551 EILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGD 630 (887)
Q Consensus 551 ~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~ 630 (887)
+.++.+++.++ .+|..+. ++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGIP---AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCCCCC---CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 34555555554 3343322 2466666666666655555555666666666666666655444555566666666666
Q ss_pred CcCCCCCCccccCCCCCCEEEccCCccccc
Q 040113 631 NQIRDIFPSWLGTLPNLTVLILQSNKFYGI 660 (887)
Q Consensus 631 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 660 (887)
|++++..+..|..+++|++|++++|++.+.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 115 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSL 115 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCccc
Confidence 666555444455555555555555555443
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=2.2e-18 Score=172.67 Aligned_cols=175 Identities=20% Similarity=0.205 Sum_probs=147.1
Q ss_pred cEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcc
Q 040113 506 LTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNF 585 (887)
Q Consensus 506 ~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l 585 (887)
+.++++++.++......+..++++++++|++.+..+..+..+++|++|++++|++++..+..+..++ +|++|++++|++
T Consensus 10 ~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l 88 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT-SLTYLNLSTNQL 88 (208)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCC
T ss_pred CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCC-CcCEEECCCCcC
Confidence 3445555555444444455677777777777766667788999999999999999977777778887 799999999999
Q ss_pred cccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCc
Q 040113 586 FGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPR 665 (887)
Q Consensus 586 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 665 (887)
++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++.+
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------ 162 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------ 162 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC------
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec------
Confidence 98888888999999999999999998888889999999999999999999888789999999999999998764
Q ss_pred cccCCCCCCEEEcCCCcCcccCChh
Q 040113 666 IDCGFSKLRIIDLSNNRFTGKLPSK 690 (887)
Q Consensus 666 ~~~~l~~L~~L~Ls~N~l~~~ip~~ 690 (887)
.+++|+.|+++.|+++|.+|..
T Consensus 163 ---~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 163 ---TCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp ---CTTTTHHHHHHHHHCTTTBBCT
T ss_pred ---CCCCHHHHHHHHHhCCceeecc
Confidence 4678999999999999999965
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=4.1e-17 Score=172.31 Aligned_cols=173 Identities=25% Similarity=0.291 Sum_probs=98.1
Q ss_pred ccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHH
Q 040113 122 SLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANL 201 (887)
Q Consensus 122 ~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~ 201 (887)
.+..+++|++|++++|.+... + .++.+++|++|++++|.+.+..+ +.++++|++|++++|.+..++ .
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~--~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~--------~ 107 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSV--Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--------S 107 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG--------G
T ss_pred chhhcCcccEEEccCCCcccC--h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh--------h
Confidence 345667777777777777643 3 36677777777777777754333 666777777777766633221 2
Q ss_pred hhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCC
Q 040113 202 VEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLK 281 (887)
Q Consensus 202 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 281 (887)
+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++. ..++.+++|+
T Consensus 108 l~~l~~L~~L~L~~n~i~~~--------------------------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 159 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNGISDI--------------------------NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLD 159 (291)
T ss_dssp GTTCTTCCEEECTTSCCCCC--------------------------GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred hccCCCCCEEECCCCcCCCC--------------------------hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCC
Confidence 44445555555555444432 2344455555555555555433 3455555555
Q ss_pred EEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCC
Q 040113 282 KLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFS 341 (887)
Q Consensus 282 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~ 341 (887)
+|++++|.+++..+ +..+++|++|++++|.+++ ++ . +..+++|+.|++++|.++
T Consensus 160 ~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~--l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 160 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-A--LAGLKNLDVLELFSQECL 213 (291)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-G--GTTCTTCSEEEEEEEEEE
T ss_pred EEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-h--hccCCCCCEEECcCCccc
Confidence 55555555554333 5556666666666665553 22 1 555666666666666654
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=8.4e-17 Score=186.32 Aligned_cols=187 Identities=25% Similarity=0.280 Sum_probs=145.6
Q ss_pred EEEcCCCcccccccCCcccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEcc
Q 040113 105 KLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLS 184 (887)
Q Consensus 105 ~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~ 184 (887)
.+++....+.+.+ .+..+++|++|++++|.+.. +| .++.+++|++|+|++|.+.+..| +..+++|++|+|+
T Consensus 25 ~l~l~~~~i~~~~----~~~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 25 KDNLKKKSVTDAV----TQNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHTTCSCTTSEE----CHHHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHhccCCCccccc----chhcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 3444444444332 45678889999999998875 33 58889999999999998876544 8889999999999
Q ss_pred CCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCC
Q 040113 185 LNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLN 264 (887)
Q Consensus 185 ~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 264 (887)
+|.+..++ .+..+++|++|+|++|.+.+. ..+..+++|+.|+|++|.+.+. ..+..+++|++|+|++|
T Consensus 96 ~N~l~~l~--------~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 96 ENKIKDLS--------SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp SSCCCCCT--------TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSS
T ss_pred CCCCCCCh--------hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCC
Confidence 98854432 577888888888888888764 4578888888888888888865 56788888888888888
Q ss_pred CCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCC
Q 040113 265 ELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSG 316 (887)
Q Consensus 265 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 316 (887)
.+.+..| +..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|++.+
T Consensus 164 ~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 164 QISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred cCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 8877655 88888888888888888754 357888888888888888874
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=4.5e-17 Score=177.99 Aligned_cols=179 Identities=25% Similarity=0.297 Sum_probs=133.9
Q ss_pred CeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCcccc-CCCcccEEEccCCeeeeeCCccccCCCCCcEEeCC
Q 040113 551 EILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFM-KESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIG 629 (887)
Q Consensus 551 ~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~ 629 (887)
+.++++++.++ .+|..+. ..++.|+|++|++++..+..|. .+++|++|+|++|++++..+..|.++++|++|+|+
T Consensus 21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 56788888876 4665543 2578888888888887777777 88888888888888888777788888888888888
Q ss_pred CCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCcccc
Q 040113 630 DNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYL 709 (887)
Q Consensus 630 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~ 709 (887)
+|++++..+..|..+++|++|+|++|++.+..+..+ .++++|+.|+|++|+++ .+|...|..+.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~L~~N~l~-~l~~~~~~~~~------------- 160 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF--EDMAQLQKLYLSQNQIS-RFPVELIKDGN------------- 160 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCC-SCCGGGTC----------------
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHh--CCcccCCEEECCCCcCC-eeCHHHhcCcc-------------
Confidence 888888877778888888888888888887766555 67788888888888887 45544321100
Q ss_pred ccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccC--CCEEeCCCCccc
Q 040113 710 QDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKG--LQVLNLDNNNLQ 784 (887)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~--L~~L~Ls~N~l~ 784 (887)
.++.|+.|||++|+|++..+..+..++. |+.|+|++|.+.
T Consensus 161 -----------------------------------~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 161 -----------------------------------KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ------------------------------------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred -----------------------------------cCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 1456778888888888766677777766 377888888765
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=5.4e-17 Score=163.69 Aligned_cols=143 Identities=16% Similarity=0.128 Sum_probs=115.8
Q ss_pred CCCCeEEcCCCccCCCCC-CcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEE
Q 040113 548 DSLEILVLSHNNLSGLLP-RCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFL 626 (887)
Q Consensus 548 ~~L~~L~Ls~n~l~~~~p-~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 626 (887)
..+++|++++|.+++..| ..+..++ +|++|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLP-QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCC-CCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence 356788888888876654 3466776 68888888888888877788888888888888888888777778888888888
Q ss_pred eCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhh
Q 040113 627 DIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFL 693 (887)
Q Consensus 627 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~ 693 (887)
+|++|++++..|..|..+++|++|+|++|++++..+..+ ..+++|+.|++++|++.+..+...+.
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l~~l~ 175 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF--DTLHSLSTLNLLANPFNCNCYLAWLG 175 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT--TTCTTCCEEECCSCCEECSGGGHHHH
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh--cCCCCCCEEEecCcCCcCCCchHHHH
Confidence 888888888888888888888888888888888877665 67888999999999988877755443
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.71 E-value=6e-17 Score=163.36 Aligned_cols=153 Identities=24% Similarity=0.233 Sum_probs=131.4
Q ss_pred EEeCCCcccccCCCCCCCCCcEEEccCccccccCC-hhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcc
Q 040113 507 TLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIP-SWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNF 585 (887)
Q Consensus 507 ~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l 585 (887)
.+++++|.++......+..++++++++|++.+..+ ..|..+++|++|++++|.+++..+..|..++ +|++|+|++|++
T Consensus 15 ~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~l 93 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS-GVNEILLTSNRL 93 (220)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCC
T ss_pred EeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC-CCCEEECCCCcc
Confidence 44455554444333334456677777777776644 4588999999999999999988888999998 799999999999
Q ss_pred cccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCccccc
Q 040113 586 FGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGI 660 (887)
Q Consensus 586 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 660 (887)
++..+..|..+++|++|++++|++++..|..|.++++|++|+|++|++++..|..|..+++|++|++++|++.+.
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999865
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.71 E-value=7e-17 Score=170.57 Aligned_cols=150 Identities=29% Similarity=0.377 Sum_probs=87.0
Q ss_pred hhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCC
Q 040113 202 VEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLK 281 (887)
Q Consensus 202 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 281 (887)
+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+. ..+..+++|+
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~ 137 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLE 137 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCC
T ss_pred HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCC
Confidence 3444555555555555554333 56666666666666666542 2366666777777777766543 3466666666
Q ss_pred EEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccC
Q 040113 282 KLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGR 361 (887)
Q Consensus 282 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 361 (887)
+|++++|.+++. ..++.+++|++|++++|++++..+ +..+++|+.|++++|.+++. + .+..+++|+.|++++
T Consensus 138 ~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 138 SLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFS 209 (291)
T ss_dssp EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEE
T ss_pred EEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh----hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcC
Confidence 666666666643 445666666666666666654322 45566666666666666532 2 255556666666666
Q ss_pred CcCC
Q 040113 362 CNFS 365 (887)
Q Consensus 362 n~i~ 365 (887)
|.+.
T Consensus 210 n~i~ 213 (291)
T 1h6t_A 210 QECL 213 (291)
T ss_dssp EEEE
T ss_pred Cccc
Confidence 5554
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=9.5e-17 Score=161.90 Aligned_cols=142 Identities=20% Similarity=0.253 Sum_probs=108.8
Q ss_pred CCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEe
Q 040113 548 DSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLD 627 (887)
Q Consensus 548 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 627 (887)
++|+.|++++|.+++..+..|..++ +|++|+|++|++++..|..|..+++|++|+|++|+++...+..|.++++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~-~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYK-KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCT-TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCC-CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence 4677777777777766666777776 688888888888777777788888888888888888866666677788888888
Q ss_pred CCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhh
Q 040113 628 IGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSF 692 (887)
Q Consensus 628 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~ 692 (887)
|++|++++..|..|..+++|++|+|++|++++..+..+ ..+++|+.|++++|++.+.....++
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~c~c~l~~l 173 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF--SPLRAIQTMHLAQNPFICDCHLKWL 173 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCEECSGGGHHH
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH--hCCCCCCEEEeCCCCcCCCCccHHH
Confidence 88888888877788888888888888888887765544 5678888888888888776554443
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.71 E-value=1.7e-16 Score=161.18 Aligned_cols=62 Identities=21% Similarity=0.235 Sum_probs=34.3
Q ss_pred CCCCccccceEecCCCCcEEEEEcCCCcccccccCCcccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCC
Q 040113 85 NIDCCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSF 164 (887)
Q Consensus 85 ~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~ 164 (887)
+.+.|+|++|.|+.. .+. .++. .+ .++|++|+|++|.+++. .|..|..+++|++|+|++|.+
T Consensus 15 ~~~~Cs~~~v~c~~~------------~l~-~ip~--~~--~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~l 76 (229)
T 3e6j_A 15 SQCSCSGTTVDCRSK------------RHA-SVPA--GI--PTNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQL 76 (229)
T ss_dssp TTCEEETTEEECTTS------------CCS-SCCS--CC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred CCCEEeCCEeEccCC------------CcC-ccCC--CC--CCCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCCC
Confidence 467799999999643 121 2221 11 14555666666655543 344555555555555555555
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.70 E-value=1e-16 Score=161.75 Aligned_cols=155 Identities=19% Similarity=0.180 Sum_probs=142.9
Q ss_pred ccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCc
Q 040113 505 LLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANN 584 (887)
Q Consensus 505 L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~ 584 (887)
-+.++++++.++......+..++.+++++|++.+..+..|..+++|++|++++|.+++..|..|.+++ +|++|+|++|+
T Consensus 13 ~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~Ls~N~ 91 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR-SLNSLVLYGNK 91 (220)
T ss_dssp TTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS-SCCEEECCSSC
T ss_pred CCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc-CCCEEECCCCc
Confidence 46789999999877666678999999999999988888899999999999999999988899999998 79999999999
Q ss_pred ccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCccccc
Q 040113 585 FFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGI 660 (887)
Q Consensus 585 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 660 (887)
+++..+..|..+++|++|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|++...
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 9988888899999999999999999999999999999999999999999999888899999999999999998753
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.70 E-value=5.1e-17 Score=177.55 Aligned_cols=179 Identities=23% Similarity=0.218 Sum_probs=143.0
Q ss_pred EEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhh-CcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcc
Q 040113 507 TLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLC-KLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNF 585 (887)
Q Consensus 507 ~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l 585 (887)
.++++++.++......+..++.|++++|++.+..+..+. .+++|+.|+|++|+|++..+..|..++ +|++|+|++|++
T Consensus 22 ~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~l 100 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-NLRYLDLSSNHL 100 (361)
T ss_dssp EEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCC
T ss_pred EEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC-CCCEEECCCCcC
Confidence 444444444443333345566777777777777777776 899999999999999988888899888 799999999999
Q ss_pred cccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccc---cCCCCCCEEEccCCcccccCC
Q 040113 586 FGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWL---GTLPNLTVLILQSNKFYGIIR 662 (887)
Q Consensus 586 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~ 662 (887)
++..+..|..+++|++|+|++|++++..|..|.++++|+.|+|++|++++..+..| ..+++|+.|+|++|++++..+
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 180 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL 180 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH
T ss_pred CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH
Confidence 98888889999999999999999999889999999999999999999998866666 568999999999999987643
Q ss_pred CCccccCCCC--CCEEEcCCCcCcccCC
Q 040113 663 EPRIDCGFSK--LRIIDLSNNRFTGKLP 688 (887)
Q Consensus 663 ~~~~~~~l~~--L~~L~Ls~N~l~~~ip 688 (887)
..+ ..++. ++.|++++|++.+...
T Consensus 181 ~~~--~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 181 TDL--QKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp HHH--HHSCHHHHTTEECCSSCEECCHH
T ss_pred HHh--hhccHhhcceEEecCCCccCCcC
Confidence 332 44555 4789999999987654
No 111
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=4.1e-18 Score=202.58 Aligned_cols=220 Identities=21% Similarity=0.187 Sum_probs=89.6
Q ss_pred CHHHHHHHHHhhhcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCccccceEecCCCCcEEEEEcCCCccccccc
Q 040113 39 HDDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKPEEGNIDCCSWDGVECSENTGHVMKLDLSNSCLYGSIN 118 (887)
Q Consensus 39 ~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~ 118 (887)
.+.++++|+++......... .....|... ....+.|.++.++. ++++.|+|.++.+.....
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~---------------~~~~~~~~~--~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~~~ 190 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDSKT---------------AKKQQPTGD--STPSGTATNSAVST--PLTPKIELFANGKDEANQ 190 (727)
T ss_dssp --CCCHHHHHHHHHHHHHHT---------------TC-------------------------------------------
T ss_pred cccchhhhhhhhhhcccccC---------------cccCCCcCC--CCccccCCCceecC--CccceEEeeCCCCCcchh
Confidence 45678899999877533221 123456542 34557898888764 589999999887765322
Q ss_pred CCcccccCCCCCeEECCCCCCCCC--------CCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCC
Q 040113 119 SSSSLFKLVHLEWLNLAFNDFKSS--------EIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYG 190 (887)
Q Consensus 119 ~~~~l~~l~~L~~L~L~~n~~~~~--------~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~ 190 (887)
. .|+.++|+.+.+.+. ..|..+..+++|++|+|++|.+. .+|..+.++++|++|+|++|
T Consensus 191 ---~-----~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N---- 257 (727)
T 4b8c_D 191 ---A-----LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGN---- 257 (727)
T ss_dssp ---------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTS----
T ss_pred ---h-----HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCC----
Confidence 2 244444555444321 12444555556666666665553 45544445555555555544
Q ss_pred ccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcc
Q 040113 191 LELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGEL 270 (887)
Q Consensus 191 l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 270 (887)
.++ .+|..++.+++|++|+|++|.++ .+|..|..+++|++|+|++|.+. .+
T Consensus 258 --------------------------~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~l 308 (727)
T 4b8c_D 258 --------------------------SLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TL 308 (727)
T ss_dssp --------------------------CCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CC
T ss_pred --------------------------cCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-cc
Confidence 444 44555555666666666666665 44556666666666666666664 45
Q ss_pred hhhccCCCCCCEEEccCCCCCCccchhhhCCC-CCCEEEccCCcCCCCCC
Q 040113 271 PVSIGNLHSLKKLDLSINNLSGELPTSIQNLV-SLEELDLSFNKLSGEFP 319 (887)
Q Consensus 271 p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~ 319 (887)
|..|+++++|++|+|++|.+++.+|..+..+. .+..+++++|.+++.+|
T Consensus 309 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 309 PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred ChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 55566666666666666666666665554332 11234566666665554
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=2.4e-16 Score=182.49 Aligned_cols=191 Identities=24% Similarity=0.262 Sum_probs=121.8
Q ss_pred CCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCC
Q 040113 127 VHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLS 206 (887)
Q Consensus 127 ~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~ 206 (887)
..+..+++..+.+.+. ..+..+++|++|++++|.+.. +| .+..+++|++|+|++|.+..+. . +..++
T Consensus 21 ~~l~~l~l~~~~i~~~---~~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~-------~-l~~l~ 87 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDA---VTQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIK-------P-LTNLK 87 (605)
T ss_dssp HHHHHHHTTCSCTTSE---ECHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCG-------G-GGGCT
T ss_pred HHHHHHhccCCCcccc---cchhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCCh-------h-hccCC
Confidence 3455566676666543 235677888888888888743 44 4777888888888887754332 1 66777
Q ss_pred CCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEcc
Q 040113 207 NLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLS 286 (887)
Q Consensus 207 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 286 (887)
+|++|+|++|.+.+. ..+..+++|++|+|++|.+.+. ..+..+++|+.|+|++|.+.+. ..++.+++|+.|+|+
T Consensus 88 ~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls 161 (605)
T 1m9s_A 88 NLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLE 161 (605)
T ss_dssp TCCEEECCSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECC
T ss_pred CCCEEECcCCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECc
Confidence 777777777776652 2466667777777777766642 3466666677777766666544 456666666666666
Q ss_pred CCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCC
Q 040113 287 INNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSG 342 (887)
Q Consensus 287 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 342 (887)
+|.+.+..| +..+++|++|+|++|++++ ++ . +..+++|+.|+|++|.+.+
T Consensus 162 ~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~--l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 162 DNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-A--LAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp SSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-G--GTTCTTCSEEECCSEEEEC
T ss_pred CCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-H--HccCCCCCEEEccCCcCcC
Confidence 666665444 6666666666666666653 22 2 5556666666666666553
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.67 E-value=5.7e-16 Score=157.35 Aligned_cols=137 Identities=23% Similarity=0.219 Sum_probs=105.8
Q ss_pred CCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEe
Q 040113 548 DSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLD 627 (887)
Q Consensus 548 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 627 (887)
++|++|++++|.+++..|..+..++ +|++|+|++|++.+..+..|..+++|++|++++|++++..+..|..+++|++|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLI-NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCcc-CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 6777778888877777777777776 688888888887766666777788888888888888877677777888888888
Q ss_pred CCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCC
Q 040113 628 IGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLP 688 (887)
Q Consensus 628 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip 688 (887)
|++|+++. +|..+..+++|++|+|++|++.+..+..+ ..+++|+.|++++|++.+..+
T Consensus 119 Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 119 MCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAF--DRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECTTSCBCTTBG
T ss_pred ccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHH--hCCCCCCEEEeeCCCccCCcc
Confidence 88888874 46777888888888888888877655443 667888888888888887665
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=1.4e-16 Score=157.77 Aligned_cols=110 Identities=23% Similarity=0.380 Sum_probs=57.3
Q ss_pred hcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCC-CCCccchhhhCCCCC
Q 040113 226 LANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINN-LSGELPTSIQNLVSL 304 (887)
Q Consensus 226 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L 304 (887)
+..+++|++|++++|.+++..+..++.+++|++|++++|.+++..|..++.+++|++|++++|. ++ .+| .+..+++|
T Consensus 84 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L 161 (197)
T 4ezg_A 84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPEL 161 (197)
T ss_dssp GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSC
T ss_pred hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCC
Confidence 4444455555555555544444455555555555555555555455555555555555555555 33 333 45556666
Q ss_pred CEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCC
Q 040113 305 EELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFS 341 (887)
Q Consensus 305 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~ 341 (887)
++|++++|++++ ++ . +..+++|++|++++|++.
T Consensus 162 ~~L~l~~n~i~~-~~-~--l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 162 KSLNIQFDGVHD-YR-G--IEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CEEECTTBCCCC-CT-T--GGGCSSCCEEEECBC---
T ss_pred CEEECCCCCCcC-hH-H--hccCCCCCEEEeeCcccC
Confidence 666666665553 22 2 455566666666666553
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=7.4e-17 Score=167.55 Aligned_cols=100 Identities=19% Similarity=0.205 Sum_probs=59.8
Q ss_pred cceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEcc
Q 040113 574 KLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQ 653 (887)
Q Consensus 574 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 653 (887)
++..+++++|.+++.. .+..+++|+.|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 4666667777666443 35566677777777776663 33 46666667777777776666543 6666666666666
Q ss_pred CCcccccCCCCccccCCCCCCEEEcCCCcCc
Q 040113 654 SNKFYGIIREPRIDCGFSKLRIIDLSNNRFT 684 (887)
Q Consensus 654 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 684 (887)
+|++.+..+. .. ++|+.|++++|+++
T Consensus 94 ~N~l~~l~~~----~~-~~L~~L~L~~N~l~ 119 (263)
T 1xeu_A 94 RNRLKNLNGI----PS-ACLSRLFLDNNELR 119 (263)
T ss_dssp SSCCSCCTTC----CC-SSCCEEECCSSCCS
T ss_pred CCccCCcCcc----cc-CcccEEEccCCccC
Confidence 6666553211 11 55555555555554
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=2.4e-16 Score=155.27 Aligned_cols=113 Identities=22% Similarity=0.350 Sum_probs=87.5
Q ss_pred CCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeee
Q 040113 746 PDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFN 825 (887)
Q Consensus 746 ~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ 825 (887)
.+.|+.|+|++|+|++.+|..|+.+++|++|+|++|++++..|..|+++++|++|+|++|++++.+|..+..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 35678888888888888888888888899999999999888888888888999999999999888888888888899999
Q ss_pred cccCcccccCCCCCcCcc-ccccccCCCcCCCCCC
Q 040113 826 VSDNYLTGPIPQGRQFAT-FDNSSFESNSGLCGRP 859 (887)
Q Consensus 826 ls~N~l~g~iP~~~~~~~-~~~~~~~~n~~lcg~~ 859 (887)
+++|+++|..|-. .+.. +....+.++...|+.|
T Consensus 133 L~~N~l~c~c~l~-~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 133 LASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CTTCCBCCSGGGH-HHHHHHHHHCCSGGGCBBCSS
T ss_pred eCCCCccCcCcch-HHHHHHHHcCCCCCCCCCCCC
Confidence 9999888766532 1111 2233455565667655
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=2.1e-18 Score=198.63 Aligned_cols=203 Identities=22% Similarity=0.160 Sum_probs=109.0
Q ss_pred ccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCC-------------CCccCCccccCCCCCcEEE-ccCCCCC
Q 040113 124 FKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSS-------------FFGQIPSEILELVNLVSLD-LSLNSGY 189 (887)
Q Consensus 124 ~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~-------------~~~~~p~~l~~l~~L~~L~-l~~n~~~ 189 (887)
..+++|+.|+|++|.+. .+|+.+++|++|+.|++++|. ..+.+|..++.+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~--~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST--VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH--HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH--hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 44566666666666665 256666666666666665543 3334444444455555544 3332210
Q ss_pred CccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCc
Q 040113 190 GLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGE 269 (887)
Q Consensus 190 ~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 269 (887)
. |+.+.+++|.+....+ ..|++|++++|.+++ +|. ++.+++|++|++++|.++ .
T Consensus 424 ~-----------------L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~ 477 (567)
T 1dce_A 424 D-----------------LRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-A 477 (567)
T ss_dssp H-----------------HHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-C
T ss_pred h-----------------hhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-c
Confidence 0 0011111111111100 246666666666664 343 666666666666666665 5
Q ss_pred chhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCC-CchhhccCCCCccEEEccCCCCCCccccc-
Q 040113 270 LPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEF-PWSIVIGNFTQLQSLDFTSNKFSGELHAS- 347 (887)
Q Consensus 270 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~- 347 (887)
+|..++++++|++|+|++|.+++ +| .++.+++|++|+|++|++++.. |.. ++.+++|+.|++++|.+++..+..
T Consensus 478 lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~--l~~l~~L~~L~L~~N~l~~~~~~~~ 553 (567)
T 1dce_A 478 LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQP--LVSCPRLVLLNLQGNSLCQEEGIQE 553 (567)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGG--GGGCTTCCEEECTTSGGGGSSSCTT
T ss_pred cchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHH--HhcCCCCCEEEecCCcCCCCccHHH
Confidence 56666666666666666666664 44 5666666666666666666544 554 666666666666666665443321
Q ss_pred --cCCCCCccEEE
Q 040113 348 --IGNLRSLEVLA 358 (887)
Q Consensus 348 --l~~l~~L~~L~ 358 (887)
+..+++|+.|+
T Consensus 554 ~l~~~lp~L~~L~ 566 (567)
T 1dce_A 554 RLAEMLPSVSSIL 566 (567)
T ss_dssp HHHHHCTTCSEEE
T ss_pred HHHHHCcccCccC
Confidence 22356666664
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=8e-19 Score=202.11 Aligned_cols=86 Identities=31% Similarity=0.426 Sum_probs=52.6
Q ss_pred ceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccC-CccccCCCCCCeeec
Q 040113 748 ILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQI-PQQLVELTFLEFFNV 826 (887)
Q Consensus 748 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~-p~~l~~L~~L~~L~l 826 (887)
.|+.|+|++|.|+ .+|..++.+++|+.|+|++|++++ +| .++++++|+.|+|++|++++.+ |..+..+++|++|++
T Consensus 464 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L 540 (567)
T 1dce_A 464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540 (567)
T ss_dssp TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEe
Confidence 4555666666665 555566666666666666666664 44 5666666666666666666555 666666666666666
Q ss_pred ccCcccccCC
Q 040113 827 SDNYLTGPIP 836 (887)
Q Consensus 827 s~N~l~g~iP 836 (887)
++|++++.+|
T Consensus 541 ~~N~l~~~~~ 550 (567)
T 1dce_A 541 QGNSLCQEEG 550 (567)
T ss_dssp TTSGGGGSSS
T ss_pred cCCcCCCCcc
Confidence 6666665544
No 119
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=5.2e-16 Score=153.73 Aligned_cols=154 Identities=17% Similarity=0.273 Sum_probs=97.3
Q ss_pred hcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCE
Q 040113 203 EKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKK 282 (887)
Q Consensus 203 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 282 (887)
+.+++|++|++++|.+. .++ .+..+++|++|++++|.+.. +..+..+++|++|++++|.+++..+..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34455566666666555 233 46666777777777775542 235677777777777777777666667777777777
Q ss_pred EEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCC
Q 040113 283 LDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRC 362 (887)
Q Consensus 283 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 362 (887)
|++++|.+++..+..++.+++|++|++++|...+.++ . +..+++|+.|++++|.+++ ++ .+..+++|++|++++|
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~--l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-P--LKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-G--GGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-h--hcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence 7777777776667777777777777777776333444 2 5666667777777766654 22 4555566666666666
Q ss_pred cCC
Q 040113 363 NFS 365 (887)
Q Consensus 363 ~i~ 365 (887)
++.
T Consensus 192 ~i~ 194 (197)
T 4ezg_A 192 TIG 194 (197)
T ss_dssp ---
T ss_pred ccC
Confidence 553
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=2.2e-16 Score=163.89 Aligned_cols=124 Identities=20% Similarity=0.271 Sum_probs=62.6
Q ss_pred cCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEE
Q 040113 547 LDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFL 626 (887)
Q Consensus 547 l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 626 (887)
+.++..+++++|.+++.. .+..++ +|++|++++|+++.. + .+..+++|++|++++|++++..+ +.++++|++|
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~-~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELS-GVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHT-TCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcC-cCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 334455555555554322 344444 456666666655432 2 45555556666666665554433 5555566666
Q ss_pred eCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCc
Q 040113 627 DIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFT 684 (887)
Q Consensus 627 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 684 (887)
++++|++++..+ +.. ++|++|++++|++++.. . ...+++|+.|++++|+++
T Consensus 91 ~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~~--~--l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 91 SVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDTD--S--LIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp ECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBSG--G--GTTCTTCCEEECTTSCCC
T ss_pred ECCCCccCCcCc--ccc-CcccEEEccCCccCCCh--h--hcCcccccEEECCCCcCC
Confidence 666665555422 122 55566666666555431 1 134445555555555443
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=7.8e-17 Score=191.59 Aligned_cols=93 Identities=22% Similarity=0.262 Sum_probs=44.7
Q ss_pred CccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccC
Q 040113 590 PNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCG 669 (887)
Q Consensus 590 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 669 (887)
+..|..+..|+.|+|++|.+. .+|..+.++++|++|+|++|+|+ .+|..|..+++|++|+|++|+++ .+|..+ ..
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~--~~ 291 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL--GS 291 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSG--GG
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhh--cC
Confidence 444555555555555555555 33444445555555555555555 33445555555555555555555 233333 44
Q ss_pred CCCCCEEEcCCCcCcccCC
Q 040113 670 FSKLRIIDLSNNRFTGKLP 688 (887)
Q Consensus 670 l~~L~~L~Ls~N~l~~~ip 688 (887)
+++|++|+|++|.++ .+|
T Consensus 292 l~~L~~L~L~~N~l~-~lp 309 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLP 309 (727)
T ss_dssp GTTCSEEECCSSCCC-CCC
T ss_pred CCCCCEEECCCCCCC-ccC
Confidence 555555555555553 444
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.61 E-value=3.9e-15 Score=146.56 Aligned_cols=137 Identities=20% Similarity=0.256 Sum_probs=115.7
Q ss_pred CeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCc-cccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCC
Q 040113 551 EILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPN-TFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIG 629 (887)
Q Consensus 551 ~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~ 629 (887)
+.+++++|.++ .+|..+.. ++++|++++|++++..+. .|..+++|++|++++|++++..|..|.++++|++|+|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~---~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT---TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCCC---CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 67888888885 66765543 689999999998877764 48889999999999999998888889999999999999
Q ss_pred CCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhh
Q 040113 630 DNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFL 693 (887)
Q Consensus 630 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~ 693 (887)
+|++++..+..|..+++|++|+|++|++++..+..+ ..+++|+.|++++|++.+.++...+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l~~~~ 148 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSLNLASNPFNCNCHLAWFA 148 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS--TTCTTCCEEECTTCCBCCSGGGHHHH
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh--hcCCCCCEEEeCCCCccCcCcchHHH
Confidence 999999888889999999999999999998877765 67889999999999999887755443
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=3.7e-14 Score=139.53 Aligned_cols=137 Identities=23% Similarity=0.268 Sum_probs=113.9
Q ss_pred CeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCC
Q 040113 551 EILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGD 630 (887)
Q Consensus 551 ~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~ 630 (887)
+.+++++|.++ .+|..+. .+|++|++++|+++ .+|..|..+++|++|++++|++++..+..|.++++|++|+|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 57888888887 5666543 37999999999987 5667888999999999999999988888899999999999999
Q ss_pred CcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhc
Q 040113 631 NQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLC 694 (887)
Q Consensus 631 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~ 694 (887)
|++++..+..|..+++|++|+|++|++++..+..+ ..+++|+.|++++|++.+.....++..
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~C~c~l~~l~~ 149 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF--NDLSALSHLAIGANPLYCDCNMQWLSD 149 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--TTCTTCCEEECCSSCEECSGGGHHHHH
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhh--hcCccccEEEeCCCCeecCCcCHHHHH
Confidence 99999988889999999999999999987765544 678899999999999987766555543
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.52 E-value=4.4e-14 Score=135.90 Aligned_cols=134 Identities=29% Similarity=0.306 Sum_probs=68.0
Q ss_pred CCCCEEEccCCCCC-CCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEE
Q 040113 206 SNLETLDLGYVSIR-STIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLD 284 (887)
Q Consensus 206 ~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 284 (887)
++|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45555555555554 44454455555555555555555543 4455555555555555555544554455555555555
Q ss_pred ccCCCCCCcc-chhhhCCCCCCEEEccCCcCCCCCCc-hhhccCCCCccEEEccCCCCC
Q 040113 285 LSINNLSGEL-PTSIQNLVSLEELDLSFNKLSGEFPW-SIVIGNFTQLQSLDFTSNKFS 341 (887)
Q Consensus 285 L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~L~~n~l~ 341 (887)
+++|.+++.. +..+..+++|++|++++|.+++..+. ...+..+++|+.|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 5555555321 14455555555555555555432220 001444555555555555443
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.51 E-value=2.2e-14 Score=138.01 Aligned_cols=135 Identities=19% Similarity=0.195 Sum_probs=92.2
Q ss_pred cCCCCeEEcCCCccC-CCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcE
Q 040113 547 LDSLEILVLSHNNLS-GLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEF 625 (887)
Q Consensus 547 l~~L~~L~Ls~n~l~-~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 625 (887)
.++|+.|++++|.++ +.+|..+..++ +|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFV-NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGG-GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCC-CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 356777777777776 56666666666 577777777777655 56667777777777777777666666666777777
Q ss_pred EeCCCCcCCCCCC-ccccCCCCCCEEEccCCcccccCCCC-ccccCCCCCCEEEcCCCcCc
Q 040113 626 LDIGDNQIRDIFP-SWLGTLPNLTVLILQSNKFYGIIREP-RIDCGFSKLRIIDLSNNRFT 684 (887)
Q Consensus 626 L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~~~l~~L~~L~Ls~N~l~ 684 (887)
|++++|++++... ..+..+++|++|++++|++++..+.. .....+++|+.|++++|.+.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 7777777776532 56777777777777777777654300 12256777777777777765
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.51 E-value=3.9e-14 Score=133.22 Aligned_cols=129 Identities=27% Similarity=0.284 Sum_probs=78.4
Q ss_pred CCCCEEEccCCCCC-CCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEE
Q 040113 206 SNLETLDLGYVSIR-STIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLD 284 (887)
Q Consensus 206 ~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 284 (887)
++|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..++.+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666665 45565566666667777766666654 5566666666666666666655666666666666666
Q ss_pred ccCCCCCCc-cchhhhCCCCCCEEEccCCcCCCCCCc-hhhccCCCCccEEEcc
Q 040113 285 LSINNLSGE-LPTSIQNLVSLEELDLSFNKLSGEFPW-SIVIGNFTQLQSLDFT 336 (887)
Q Consensus 285 L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~L~ 336 (887)
+++|.+++. .+..++.+++|++|++++|.+++..+. ...++.+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666666642 235566666666666666666543330 0115556666666554
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.51 E-value=4.9e-14 Score=138.64 Aligned_cols=127 Identities=22% Similarity=0.354 Sum_probs=105.1
Q ss_pred eeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccC
Q 040113 732 KMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQI 811 (887)
Q Consensus 732 ~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~ 811 (887)
.+...+....+..+++.++.|+|++|.|+ .+|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++..
T Consensus 16 ~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~ 94 (193)
T 2wfh_A 16 RCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94 (193)
T ss_dssp ECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred EcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC
Confidence 33333333344456788999999999998 77899999999999999999999998999999999999999999999999
Q ss_pred CccccCCCCCCeeecccCcccccCCCC-CcCccccccccCCCcCCCCCC
Q 040113 812 PQQLVELTFLEFFNVSDNYLTGPIPQG-RQFATFDNSSFESNSGLCGRP 859 (887)
Q Consensus 812 p~~l~~L~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~~n~~lcg~~ 859 (887)
|..|..+++|++|++++|++++..|.. ..+..+....+.+|+..|++.
T Consensus 95 ~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 95 PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred HHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 999999999999999999999644422 234455666778888888764
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=1e-13 Score=134.53 Aligned_cols=134 Identities=20% Similarity=0.225 Sum_probs=114.2
Q ss_pred CCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeC
Q 040113 549 SLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDI 628 (887)
Q Consensus 549 ~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 628 (887)
+.+.++++++.++ .+|..+. ++|+.|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|++
T Consensus 8 ~~~~l~~~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 8 SGTEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp ETTEEECCSSCCS-SCCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEecCCCCc-cCCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 3567888888887 4554443 37999999999998887778889999999999999999877778899999999999
Q ss_pred CCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCC
Q 040113 629 GDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLP 688 (887)
Q Consensus 629 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip 688 (887)
++|++++..+..+..+++|++|++++|++++..+..+ ..+++|+.|++++|++.+.+|
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHh--cCCcccCEEEecCCCeeccCc
Confidence 9999999888888999999999999999987755443 678999999999999998776
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.51 E-value=5.3e-14 Score=151.57 Aligned_cols=245 Identities=16% Similarity=0.121 Sum_probs=165.1
Q ss_pred cCCCCeEEcCCCccC--CCCCCcccccCCcceEEecCCCcccccCCccccC--------CCcccEEEccCCeeeeeCCcc
Q 040113 547 LDSLEILVLSHNNLS--GLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMK--------ESRLGMIDLSHNLFQGRIPRS 616 (887)
Q Consensus 547 l~~L~~L~Ls~n~l~--~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~--------l~~L~~L~Ls~N~l~~~~~~~ 616 (887)
+++|+.|||++|++. ...+.. ++ .+..+.+..|.+ .+.+|.+ +++|+.+++.+ .++.+.+.+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~---~~-~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~a 119 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGT---YP-NGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAA 119 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSS---SG-GGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTT
T ss_pred hccCeEEecCcceeEEecCcccc---cc-cccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHH
Confidence 778899999998887 222222 12 234455555533 3456666 88899999988 788777788
Q ss_pred ccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcc----cccCCCCccccCCCCCC-EEEcCCCcCcccCChhh
Q 040113 617 LINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKF----YGIIREPRIDCGFSKLR-IIDLSNNRFTGKLPSKS 691 (887)
Q Consensus 617 l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l----~~~~~~~~~~~~l~~L~-~L~Ls~N~l~~~ip~~~ 691 (887)
|.+|++|+.+++.+|.+..+.+..|..+.++..+.+..+.. ... ....+.++..|+ .+++... +.++...
T Consensus 120 F~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i--~~~~f~~~~~L~~~i~~~~~---~~l~~~~ 194 (329)
T 3sb4_A 120 FKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRW--EHFAFIEGEPLETTIQVGAM---GKLEDEI 194 (329)
T ss_dssp TTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTT--TTSCEEESCCCEEEEEECTT---CCHHHHH
T ss_pred hhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccc--cccccccccccceeEEecCC---CcHHHHH
Confidence 88999999999999988888888888877777776655332 111 111224455665 4555432 2334333
Q ss_pred hhc---cccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhh
Q 040113 692 FLC---WNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIA 768 (887)
Q Consensus 692 ~~~---~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~ 768 (887)
+.. ...+..+...+.-+. .. ...+....+.|+.|+|++|+++...+..|.
T Consensus 195 ~~~~~~~~~~~~l~~~~~l~~------~~---------------------~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~ 247 (329)
T 3sb4_A 195 MKAGLQPRDINFLTIEGKLDN------AD---------------------FKLIRDYMPNLVSLDISKTNATTIPDFTFA 247 (329)
T ss_dssp HHTTCCGGGCSEEEEEECCCH------HH---------------------HHHHHHHCTTCCEEECTTBCCCEECTTTTT
T ss_pred hhcccCccccceEEEeeeecH------HH---------------------HHHHHHhcCCCeEEECCCCCcceecHhhhh
Confidence 322 111111111100000 00 000011156799999999999977778899
Q ss_pred cccCCCEEeCCCCcccccCCccccCCCCCC-EEeCCCCcccccCCccccCCCCCCeeecccCcccc
Q 040113 769 NLKGLQVLNLDNNNLQGHIPSCLGNLTNLE-SLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTG 833 (887)
Q Consensus 769 ~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~-~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g 833 (887)
++++|+.|+|++| ++..-+.+|.++++|+ .+++.+ .++...+..|.++++|+.+++++|+++.
T Consensus 248 ~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 248 QKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT 311 (329)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred CCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc
Confidence 9999999999998 8877788999999999 999999 7887788999999999999999999874
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.49 E-value=5.1e-14 Score=132.42 Aligned_cols=127 Identities=24% Similarity=0.228 Sum_probs=79.4
Q ss_pred CCCCEEEcccCCCC-CccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEE
Q 040113 230 SSLTFLSLHSCGLQ-GRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELD 308 (887)
Q Consensus 230 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 308 (887)
++|++|++++|.+. +.+|..+..+++|++|++++|.+.+. ..++.+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 56777777777776 56666667777777777777777654 5666677777777777777665666666666777777
Q ss_pred ccCCcCCCC-CCchhhccCCCCccEEEccCCCCCCccc---cccCCCCCccEEEcc
Q 040113 309 LSFNKLSGE-FPWSIVIGNFTQLQSLDFTSNKFSGELH---ASIGNLRSLEVLAIG 360 (887)
Q Consensus 309 L~~n~l~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~ 360 (887)
+++|++++. .+.. ++.+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 95 ls~N~i~~~~~~~~--~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEP--LKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGG--GGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHH--HhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777666532 1122 5556666666666665554333 244445555555443
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.45 E-value=1.6e-13 Score=147.74 Aligned_cols=102 Identities=11% Similarity=0.029 Sum_probs=56.3
Q ss_pred CCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCcc-EEEccCCcCCccCCccccCCCCCC
Q 040113 301 LVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLE-VLAIGRCNFSGRIPSSLRNLTQLI 379 (887)
Q Consensus 301 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~-~L~L~~n~i~~~~~~~l~~l~~L~ 379 (887)
+++|+++++++|+++ .++.. .|.++++|+.+++.+| ++...+..|..+++|+ .+++.+ .++...+.+|.++++|+
T Consensus 225 ~~~L~~l~L~~n~i~-~I~~~-aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT-TIPDF-TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCC-EECTT-TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCCCcc-eecHh-hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence 556666666665555 23322 1555666666666655 4444445556666666 666655 44444445566666666
Q ss_pred EEEcCCCCCccccchhhhhcCCCCCCEEE
Q 040113 380 TLDLSQNSYRGTMELDFLLVSLKNLEVLS 408 (887)
Q Consensus 380 ~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ 408 (887)
.++++.|.+....... |.++++|+.++
T Consensus 301 ~l~l~~n~i~~I~~~a--F~~~~~L~~ly 327 (329)
T 3sb4_A 301 YVLATGDKITTLGDEL--FGNGVPSKLIY 327 (329)
T ss_dssp EEEECSSCCCEECTTT--TCTTCCCCEEE
T ss_pred EEEeCCCccCccchhh--hcCCcchhhhc
Confidence 6666666555444433 55566665554
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.44 E-value=5.8e-13 Score=129.20 Aligned_cols=113 Identities=21% Similarity=0.247 Sum_probs=93.5
Q ss_pred CCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEe
Q 040113 548 DSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLD 627 (887)
Q Consensus 548 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 627 (887)
++|++|++++|++++..+..+..++ +|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcc-cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 5788888888888866666677777 688888888888877777788888889999999988877777788888999999
Q ss_pred CCCCcCCCCCCccccCCCCCCEEEccCCcccccC
Q 040113 628 IGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGII 661 (887)
Q Consensus 628 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 661 (887)
+++|++++..+..+..+++|++|++++|++.+..
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 9999998887777788899999999999887653
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.39 E-value=1e-14 Score=144.48 Aligned_cols=82 Identities=24% Similarity=0.336 Sum_probs=67.5
Q ss_pred CceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCC-ccccCCCCCCEEeCCCCcccccCCcc----------c
Q 040113 747 DILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIP-SCLGNLTNLESLDLSNNNFLGQIPQQ----------L 815 (887)
Q Consensus 747 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~L~~L~~L~Ls~N~l~~~~p~~----------l 815 (887)
+.|+.|++++|++++ +| .++.+++|++|++++|++++..+ ..+..+++|++|++++|++++.+|.. +
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 468889999999986 45 68889999999999999986433 46888999999999999998887764 7
Q ss_pred cCCCCCCeeecccCccc
Q 040113 816 VELTFLEFFNVSDNYLT 832 (887)
Q Consensus 816 ~~L~~L~~L~ls~N~l~ 832 (887)
..+++|++|| +|.++
T Consensus 171 ~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 171 KRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHCSSCSEEC--CGGGT
T ss_pred HhCCCcEEEC--CcccC
Confidence 8899999987 66655
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=7.4e-13 Score=127.25 Aligned_cols=106 Identities=21% Similarity=0.234 Sum_probs=92.2
Q ss_pred eeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCccccc
Q 040113 731 LKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQ 810 (887)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ 810 (887)
+.+........+..+++.++.|+|++|+|++..|..|+.+++|++|+|++|++++..|..|.++++|++|+|++|++++.
T Consensus 14 l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~ 93 (170)
T 3g39_A 14 VDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 93 (170)
T ss_dssp EECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred EEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEe
Confidence 33333444444445678899999999999999999999999999999999999988888899999999999999999988
Q ss_pred CCccccCCCCCCeeecccCcccccCC
Q 040113 811 IPQQLVELTFLEFFNVSDNYLTGPIP 836 (887)
Q Consensus 811 ~p~~l~~L~~L~~L~ls~N~l~g~iP 836 (887)
.|..|..+++|++|++++|++++..+
T Consensus 94 ~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 94 PRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 88889999999999999999997654
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.39 E-value=3.9e-13 Score=130.23 Aligned_cols=137 Identities=16% Similarity=0.139 Sum_probs=112.4
Q ss_pred hhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCC
Q 040113 543 WLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSK 622 (887)
Q Consensus 543 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 622 (887)
.+.++.+|+.|++++|.++. +|. +..+.++|++|++++|++++. ..+..+++|++|++++|++++..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 35678899999999999984 454 555544799999999999886 57889999999999999999876666789999
Q ss_pred CcEEeCCCCcCCCCCCc--cccCCCCCCEEEccCCcccccCCCC--ccccCCCCCCEEEcCCCcCcc
Q 040113 623 LEFLDIGDNQIRDIFPS--WLGTLPNLTVLILQSNKFYGIIREP--RIDCGFSKLRIIDLSNNRFTG 685 (887)
Q Consensus 623 L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~--~~~~~l~~L~~L~Ls~N~l~~ 685 (887)
|++|++++|+++.. |. .+..+++|+.|++++|++... +.. .....+++|+.||+++|....
T Consensus 90 L~~L~L~~N~i~~~-~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 90 LTELILTNNSLVEL-GDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCEEECCSCCCCCG-GGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCEEECCCCcCCcc-hhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHHH
Confidence 99999999999765 44 788999999999999999865 221 013678999999999998763
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.36 E-value=2.3e-11 Score=133.70 Aligned_cols=224 Identities=13% Similarity=0.105 Sum_probs=144.3
Q ss_pred hhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCC
Q 040113 542 SWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCS 621 (887)
Q Consensus 542 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 621 (887)
.+|.++ +|+.+.+.++ ++.....+|.++ +|+.+.+.+ .+..+.+.+|.++.+|+.+++++|+++.+...+|. +.
T Consensus 130 ~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~--~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~ 203 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNEG-LKSIGDMAFFNS--TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YA 203 (401)
T ss_dssp TTTTTC-CCSEEECCTT-CCEECTTTTTTC--CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TC
T ss_pred hhcccC-CccEEEeCCC-ccEECHHhcCCC--CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ec
Confidence 445554 5777777665 554445555553 477777765 56666666777777777777777777766556665 46
Q ss_pred CCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhc
Q 040113 622 KLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIV 701 (887)
Q Consensus 622 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l 701 (887)
+|+.+.+..+ +..+....|..+++|+.+++.+| ++.+....+ .+ .+|+.+++.+ .++ .|+...|..
T Consensus 204 ~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF--~~-~~L~~i~lp~-~i~-~I~~~aF~~------- 269 (401)
T 4fdw_A 204 GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAF--RE-SGITTVKLPN-GVT-NIASRAFYY------- 269 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTT--TT-CCCSEEEEET-TCC-EECTTTTTT-------
T ss_pred ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccc--cc-CCccEEEeCC-Ccc-EEChhHhhC-------
Confidence 7777777633 66666667777777777777654 333333332 22 5666666632 232 343333322
Q ss_pred ccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCC-----ccChhhhhcccCCCEE
Q 040113 702 NTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFD-----GMIPTSIANLKGLQVL 776 (887)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-----~~ip~~l~~l~~L~~L 776 (887)
...|+.+++.+|.+. ..-+..|.++++|+.+
T Consensus 270 --------------------------------------------c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l 305 (401)
T 4fdw_A 270 --------------------------------------------CPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARF 305 (401)
T ss_dssp --------------------------------------------CTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEE
T ss_pred --------------------------------------------CCCCCEEEeCCccccCCcccEECHHHhhCCccCCeE
Confidence 345677777776654 3455677888888888
Q ss_pred eCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCccc
Q 040113 777 NLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLT 832 (887)
Q Consensus 777 ~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~ 832 (887)
+|. +.++..-..+|.++++|+.++|..| ++..-+..|.++ +|+.+++++|.+.
T Consensus 306 ~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 306 EIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp CCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred EeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 888 4477666778888888888888555 666667778888 8888888888665
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=2e-12 Score=124.64 Aligned_cols=105 Identities=20% Similarity=0.228 Sum_probs=90.3
Q ss_pred eeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCccccc
Q 040113 731 LKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQ 810 (887)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~ 810 (887)
+.+........+..+++.|+.|+|++|+|++.+|..|+++++|++|+|++|++++..+..|+++++|+.|+|++|++++.
T Consensus 17 l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l 96 (174)
T 2r9u_A 17 VNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI 96 (174)
T ss_dssp EECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred EEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcccee
Confidence 33344444344445678899999999999999999999999999999999999987777789999999999999999987
Q ss_pred CCccccCCCCCCeeecccCcccccC
Q 040113 811 IPQQLVELTFLEFFNVSDNYLTGPI 835 (887)
Q Consensus 811 ~p~~l~~L~~L~~L~ls~N~l~g~i 835 (887)
.+..+..+++|++|++++|++....
T Consensus 97 ~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 97 PRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred CHHHhccccCCCEEEeCCCCccccc
Confidence 7777999999999999999998643
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.35 E-value=1.8e-11 Score=134.43 Aligned_cols=227 Identities=11% Similarity=0.099 Sum_probs=164.1
Q ss_pred hhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCC
Q 040113 542 SWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCS 621 (887)
Q Consensus 542 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 621 (887)
.+|.++ +|+.+.+.+ .+....+.+|.++. +|+.+++.+|+++.+...+|. ..+|+.+.+..+ +..+...+|.+|+
T Consensus 152 ~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~-~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~ 226 (401)
T 4fdw_A 152 MAFFNS-TVQEIVFPS-TLEQLKEDIFYYCY-NLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTS 226 (401)
T ss_dssp TTTTTC-CCCEEECCT-TCCEECSSTTTTCT-TCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCT
T ss_pred HhcCCC-CceEEEeCC-CccEehHHHhhCcc-cCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCC
Confidence 455553 588888875 55555666777777 688888888888777777776 478888888754 6667777888888
Q ss_pred CCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCc----ccCChhhhhcccc
Q 040113 622 KLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFT----GKLPSKSFLCWNA 697 (887)
Q Consensus 622 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~----~~ip~~~~~~~~~ 697 (887)
+|+.+++..| ++.+....|.. .+|+.+.+. +.+..+....+ .++++|+.+++.+|.+. ..++...|..
T Consensus 227 ~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF--~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~--- 298 (401)
T 4fdw_A 227 QLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAF--YYCPELAEVTTYGSTFNDDPEAMIHPYCLEG--- 298 (401)
T ss_dssp TCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTT--TTCTTCCEEEEESSCCCCCTTCEECTTTTTT---
T ss_pred CCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHh--hCCCCCCEEEeCCccccCCcccEECHHHhhC---
Confidence 8888888764 56666667777 678888884 44555544443 67788888888877654 1244333332
Q ss_pred chhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEe
Q 040113 698 MKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLN 777 (887)
Q Consensus 698 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ 777 (887)
...|+.++|. +.++..-..+|.++++|+.++
T Consensus 299 ------------------------------------------------c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~ 329 (401)
T 4fdw_A 299 ------------------------------------------------CPKLARFEIP-ESIRILGQGLLGGNRKVTQLT 329 (401)
T ss_dssp ------------------------------------------------CTTCCEECCC-TTCCEECTTTTTTCCSCCEEE
T ss_pred ------------------------------------------------CccCCeEEeC-CceEEEhhhhhcCCCCccEEE
Confidence 3456677777 446656677889999999999
Q ss_pred CCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCC-CCCeeecccCccc
Q 040113 778 LDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELT-FLEFFNVSDNYLT 832 (887)
Q Consensus 778 Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~-~L~~L~ls~N~l~ 832 (887)
|..| ++..-+.+|.++ +|+.+++++|.+....+..|.+++ .++.+.+..+.+.
T Consensus 330 lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 330 IPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp ECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred ECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 9655 776777889999 999999999998877777788774 6788888776544
No 139
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.34 E-value=2.8e-11 Score=133.67 Aligned_cols=79 Identities=20% Similarity=0.134 Sum_probs=45.5
Q ss_pred cceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEcc
Q 040113 574 KLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQ 653 (887)
Q Consensus 574 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 653 (887)
+|+.+.+.++ ++.+...+|.++.+|+.+++..+ ++.+...+|.+|++|+.+++..+ ++.+...+|.++++|+.+++.
T Consensus 298 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 298 SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred cccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 4555555433 33444455666666666666533 44455556666666666666555 555555566666666666665
Q ss_pred CC
Q 040113 654 SN 655 (887)
Q Consensus 654 ~N 655 (887)
.+
T Consensus 375 ~~ 376 (394)
T 4fs7_A 375 KR 376 (394)
T ss_dssp GG
T ss_pred CC
Confidence 44
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.33 E-value=5.3e-12 Score=121.22 Aligned_cols=105 Identities=22% Similarity=0.242 Sum_probs=58.8
Q ss_pred CCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCC
Q 040113 550 LEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIG 629 (887)
Q Consensus 550 L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~ 629 (887)
.+.+++++|.++ .+|..+. .+|++|+|++|+|++..|..|..+++|++|++++|++++..+..|.++++|++|+|+
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 456666666665 3454432 256666666666666555556666666666666666655555555555555555555
Q ss_pred CCcCCCCCCccccCCCCCCEEEccCCccc
Q 040113 630 DNQIRDIFPSWLGTLPNLTVLILQSNKFY 658 (887)
Q Consensus 630 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 658 (887)
+|++++..+..|..+++|++|+|++|++.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 55555554444555555555444444443
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.32 E-value=3.4e-12 Score=123.60 Aligned_cols=82 Identities=21% Similarity=0.149 Sum_probs=35.9
Q ss_pred CCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccch--hhhCCCCCCEEE
Q 040113 231 SLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPT--SIQNLVSLEELD 308 (887)
Q Consensus 231 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~ 308 (887)
+|++|++++|.+++. ..+..+++|++|++++|.+++..+..++.+++|++|++++|.+. .+|. .+..+++|++|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 444444444444432 33444444444444444444322222344444444444444443 2232 344444444444
Q ss_pred ccCCcCC
Q 040113 309 LSFNKLS 315 (887)
Q Consensus 309 L~~n~l~ 315 (887)
+++|.+.
T Consensus 120 l~~N~i~ 126 (176)
T 1a9n_A 120 ILRNPVT 126 (176)
T ss_dssp CCSSGGG
T ss_pred ecCCCCC
Confidence 4444444
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.31 E-value=3.7e-14 Score=140.43 Aligned_cols=135 Identities=24% Similarity=0.266 Sum_probs=101.3
Q ss_pred hhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCC
Q 040113 542 SWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCS 621 (887)
Q Consensus 542 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 621 (887)
..+..+++|++|++++|.+++ +| .+..++ +|++|++++|+++ .+|..+..+++|++|++++|++++. | .+..++
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~-~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~ 115 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEK-IS-SLSGME-NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLV 115 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESC-CC-CHHHHT-TCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHH
T ss_pred HHHhcCCCCCEEECCCCCCcc-cc-ccccCC-CCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCC
Confidence 378888888888888888876 56 777777 6888888888887 4566667778888888888888863 3 577788
Q ss_pred CCcEEeCCCCcCCCCCC-ccccCCCCCCEEEccCCcccccCCCC--------ccccCCCCCCEEEcCCCcCc
Q 040113 622 KLEFLDIGDNQIRDIFP-SWLGTLPNLTVLILQSNKFYGIIREP--------RIDCGFSKLRIIDLSNNRFT 684 (887)
Q Consensus 622 ~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~--------~~~~~l~~L~~L~Ls~N~l~ 684 (887)
+|++|++++|++++..+ ..+..+++|++|++++|++.+..+.. .....+++|+.|| +|+++
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 88888888888887533 46778888888888888887765432 0124567777776 55554
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.29 E-value=1.2e-11 Score=119.19 Aligned_cols=104 Identities=19% Similarity=0.211 Sum_probs=64.3
Q ss_pred CeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCC
Q 040113 551 EILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGD 630 (887)
Q Consensus 551 ~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~ 630 (887)
+.+++++|.++ .+|..+. .+|++|++++|++++..|..|..+++|++|+|++|++++..+..|.++++|++|+|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 56777777774 5555443 2577777777777666666666666666666666666655555556666666666666
Q ss_pred CcCCCCCCccccCCCCCCEEEccCCccc
Q 040113 631 NQIRDIFPSWLGTLPNLTVLILQSNKFY 658 (887)
Q Consensus 631 N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 658 (887)
|++++..+..|..+++|++|+|++|++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 6666555444555555555555555544
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.27 E-value=1.7e-10 Score=127.41 Aligned_cols=83 Identities=17% Similarity=0.150 Sum_probs=39.1
Q ss_pred cccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCC
Q 040113 592 TFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFS 671 (887)
Q Consensus 592 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~ 671 (887)
.|..+.+|+.+.+..+ ++.+...+|.+|++|+.++|.++ ++.+...+|.++.+|+.+++..+ +..+.... +.+++
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a--F~~C~ 366 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANA--FQGCI 366 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTT--BTTCT
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHH--hhCCC
Confidence 3445555555555433 33344445555555555555422 44444445555555555555444 33332222 24455
Q ss_pred CCCEEEcC
Q 040113 672 KLRIIDLS 679 (887)
Q Consensus 672 ~L~~L~Ls 679 (887)
+|+.+++.
T Consensus 367 ~L~~i~lp 374 (394)
T 4fs7_A 367 NLKKVELP 374 (394)
T ss_dssp TCCEEEEE
T ss_pred CCCEEEEC
Confidence 55555554
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.15 E-value=5.2e-12 Score=137.42 Aligned_cols=86 Identities=28% Similarity=0.355 Sum_probs=38.8
Q ss_pred CCCCEEEcccCCCCCc----cccccCCCCCCcEEeCcCCCCCCc----chhhccCCCCCCEEEccCCCCCCc----cchh
Q 040113 230 SSLTFLSLHSCGLQGR----IQSSLGNLSKLLHLDLSLNELLGE----LPVSIGNLHSLKKLDLSINNLSGE----LPTS 297 (887)
Q Consensus 230 ~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~~~~ 297 (887)
++|++|++++|.++.. ++..+..+++|++|+|++|.+.+. ++..+...++|++|+|++|.++.. ++..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 4444444444444321 222234445555555555554321 233344444555555555555432 2223
Q ss_pred hhCCCCCCEEEccCCcCC
Q 040113 298 IQNLVSLEELDLSFNKLS 315 (887)
Q Consensus 298 l~~l~~L~~L~L~~n~l~ 315 (887)
+...++|++|+|++|.++
T Consensus 235 L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 235 AREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHCSSCCEEECTTSSCC
T ss_pred HHhCCCCCEEeccCCCCC
Confidence 334455555555555544
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.11 E-value=1.1e-10 Score=126.76 Aligned_cols=86 Identities=20% Similarity=0.208 Sum_probs=73.6
Q ss_pred CceeEEEeec-CcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeee
Q 040113 747 DILTSIILSS-NRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFN 825 (887)
Q Consensus 747 ~~L~~L~Ls~-N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ 825 (887)
..|+.|+|++ |.|++..|..|+++++|+.|+|++|+|++..|..|++|++|+.|||++|+|++..|..+..+. |++|+
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~ 109 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELV 109 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEE
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEE
Confidence 4588999986 899888888888999999999999999988888889999999999999999877777777666 99999
Q ss_pred cccCcccc
Q 040113 826 VSDNYLTG 833 (887)
Q Consensus 826 ls~N~l~g 833 (887)
+++|++..
T Consensus 110 l~~N~~~c 117 (347)
T 2ifg_A 110 LSGNPLHC 117 (347)
T ss_dssp CCSSCCCC
T ss_pred eeCCCccC
Confidence 99998875
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.09 E-value=8.9e-12 Score=135.61 Aligned_cols=111 Identities=26% Similarity=0.254 Sum_probs=54.1
Q ss_pred CCCCCEEEccCCCCCCCchhhhcC-----CCCCCEEEcccCCCCCcccccc-CCCCCCcEEeCcCCCCCCcchhhc----
Q 040113 205 LSNLETLDLGYVSIRSTIPHNLAN-----LSSLTFLSLHSCGLQGRIQSSL-GNLSKLLHLDLSLNELLGELPVSI---- 274 (887)
Q Consensus 205 l~~L~~L~L~~n~~~~~~~~~l~~-----l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~p~~l---- 274 (887)
+++|++|++++|.++......+.. .++|++|+|++|.++......+ ..+++|++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 456777777777766543333322 2466666666666543322222 223455566666665543322222
Q ss_pred -cCCCCCCEEEccCCCCCCc----cchhhhCCCCCCEEEccCCcCC
Q 040113 275 -GNLHSLKKLDLSINNLSGE----LPTSIQNLVSLEELDLSFNKLS 315 (887)
Q Consensus 275 -~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 315 (887)
...++|++|+|++|.++.. ++..+..+++|++|+|++|.+.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 2344555555555555421 2223344445555555555443
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.03 E-value=6.8e-10 Score=120.34 Aligned_cols=104 Identities=15% Similarity=0.114 Sum_probs=69.0
Q ss_pred eEEcCCC-ccCCCCCCcccccCCcceEEecCC-CcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCC
Q 040113 552 ILVLSHN-NLSGLLPRCLGSFSDKLSILDLRA-NNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIG 629 (887)
Q Consensus 552 ~L~Ls~n-~l~~~~p~~l~~l~~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~ 629 (887)
.++.+++ .++ .+|. +..+. +|+.|+|++ |++++..+..|..+++|+.|+|++|+|++..|..|.++++|+.|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~-~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC-CCCCC-CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4566666 665 3565 66665 577777774 77776666667777777777777777777666667777777777777
Q ss_pred CCcCCCCCCccccCCCCCCEEEccCCcccc
Q 040113 630 DNQIRDIFPSWLGTLPNLTVLILQSNKFYG 659 (887)
Q Consensus 630 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 659 (887)
+|+|++..+..|..++ |+.|+|.+|++..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 7777766555555554 6666666666553
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.02 E-value=5.2e-08 Score=107.33 Aligned_cols=133 Identities=12% Similarity=0.099 Sum_probs=91.0
Q ss_pred ChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCC
Q 040113 541 PSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINC 620 (887)
Q Consensus 541 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 620 (887)
..+|..+..|+.+.+.++... ....+|.++. +|+.+.+. +.++.+...+|.++.+|+.+++..+ ++.+...+|.+|
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~-~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C 333 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCP-ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC 333 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCT-TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred cceeeecccccEEecccccce-ecCccccccc-ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC
Confidence 356778888998888765432 4556677776 68888885 4566666778888999999998765 666667789999
Q ss_pred CCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcC
Q 040113 621 SKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRF 683 (887)
Q Consensus 621 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 683 (887)
++|+.+.|..+ ++.+....|.++++|+.+++.++..... . +.....|+.+.+..+.+
T Consensus 334 ~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~~---~--~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 334 EQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQWN---A--ISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHHH---T--CBCCCCC----------
T ss_pred CCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeehh---h--hhccCCCCEEEeCCCCE
Confidence 99999998654 7777677888999999999888764321 1 24456777777665543
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.97 E-value=3.1e-08 Score=109.18 Aligned_cols=108 Identities=13% Similarity=0.181 Sum_probs=65.3
Q ss_pred hhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCC
Q 040113 543 WLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSK 622 (887)
Q Consensus 543 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 622 (887)
.|.++++|+.+.+.. .++.....+|.++. +|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|.+|++
T Consensus 283 aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~-~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~ 358 (394)
T 4gt6_A 283 AFMNCPALQDIEFSS-RITELPESVFAGCI-SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTA 358 (394)
T ss_dssp TTTTCTTCCEEECCT-TCCEECTTTTTTCT-TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred ccccccccccccCCC-cccccCceeecCCC-CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCC
Confidence 455666777777653 34434445666666 5777777653 55556677888888888888654 55566677888888
Q ss_pred CcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcc
Q 040113 623 LEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKF 657 (887)
Q Consensus 623 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 657 (887)
|+.+++.++.... ..+..+.+|+.+.+..+.+
T Consensus 359 L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 359 LNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 8888888775432 3566677788777766543
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.72 E-value=1.1e-08 Score=110.06 Aligned_cols=85 Identities=15% Similarity=0.261 Sum_probs=38.5
Q ss_pred CCCCCEEEccCCcCCCCCCchhh-ccCCCCccEEEccCCCCCCc----cccccCCCCCccEEEccCCcCCccCCccccC-
Q 040113 301 LVSLEELDLSFNKLSGEFPWSIV-IGNFTQLQSLDFTSNKFSGE----LHASIGNLRSLEVLAIGRCNFSGRIPSSLRN- 374 (887)
Q Consensus 301 l~~L~~L~L~~n~l~~~~~~~~~-~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~- 374 (887)
+++|++|++.+|.+.+..+.... ...+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.++......+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 44555555555544422211100 11245566666655555442 2222234456666666666655432222221
Q ss_pred CCCCCEEEcCCCC
Q 040113 375 LTQLITLDLSQNS 387 (887)
Q Consensus 375 l~~L~~L~L~~n~ 387 (887)
+ ...++++.++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 1 3446666654
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.66 E-value=2e-08 Score=108.08 Aligned_cols=58 Identities=24% Similarity=0.260 Sum_probs=29.0
Q ss_pred cCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhh--CCCCCCEEEcc
Q 040113 250 LGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQ--NLVSLEELDLS 310 (887)
Q Consensus 250 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~ 310 (887)
+..+++|+.|++++|.-. .++. +. +++|++|++..+.+.......+. .+++|++|+|+
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 344555555555554211 1222 22 55666666666665543333343 56666666664
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.60 E-value=3.1e-06 Score=92.53 Aligned_cols=108 Identities=14% Similarity=0.189 Sum_probs=58.9
Q ss_pred hhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCC
Q 040113 544 LCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKL 623 (887)
Q Consensus 544 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 623 (887)
+..+..|+.+.+..+ ++..-..++.++. +|+.+.+..+ +..+...+|.++.+|+.+.+.++.++.+...+|.+|.+|
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~-~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCT-ALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCT-TCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceee-hhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 334445555555443 2223333444444 4555555432 333444556666666666666666665556666666666
Q ss_pred cEEeCCCCcCCCCCCccccCCCCCCEEEccCC
Q 040113 624 EFLDIGDNQIRDIFPSWLGTLPNLTVLILQSN 655 (887)
Q Consensus 624 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 655 (887)
+.+.|..+ ++.+...+|.++.+|+.+.+..+
T Consensus 313 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 313 SSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred CEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 66666543 55555556666666766666543
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.54 E-value=5.8e-06 Score=90.36 Aligned_cols=147 Identities=12% Similarity=0.075 Sum_probs=113.9
Q ss_pred ChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCC
Q 040113 541 PSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINC 620 (887)
Q Consensus 541 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 620 (887)
...+..+..|+.+.+..+ +......++..+. .|+.+.+..+ ++.+...+|.++.+|+.+.+..+ +......+|.+|
T Consensus 210 ~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~-~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c 285 (379)
T 4h09_A 210 AYGFSYGKNLKKITITSG-VTTLGDGAFYGMK-ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGC 285 (379)
T ss_dssp TTTTTTCSSCSEEECCTT-CCEECTTTTTTCS-SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTC
T ss_pred ecccccccccceeeeccc-eeEEccccccCCc-cceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccc
Confidence 345667888999888765 3434556677777 7999999776 66677788999999999999754 665667789999
Q ss_pred CCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccc
Q 040113 621 SKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWN 696 (887)
Q Consensus 621 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~ 696 (887)
++|+.+.+.++.++.+....|.++.+|+.+.|..+ ++.+.... +.++++|+.+.+..+ ++ .|....|.+..
T Consensus 286 ~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a--F~~C~~L~~i~ip~~-v~-~I~~~aF~~c~ 356 (379)
T 4h09_A 286 SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYA--FKNCKALSTISYPKS-IT-LIESGAFEGSS 356 (379)
T ss_dssp TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTT--TTTCTTCCCCCCCTT-CC-EECTTTTTTSS
T ss_pred cccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHH--hhCCCCCCEEEECCc-cC-EEchhHhhCCC
Confidence 99999999999999888889999999999999765 55554343 478899999998765 43 56666676654
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.48 E-value=1.7e-09 Score=110.09 Aligned_cols=23 Identities=0% Similarity=-0.259 Sum_probs=16.1
Q ss_pred CCCccccceEecCCCCcEEEEEc
Q 040113 86 IDCCSWDGVECSENTGHVMKLDL 108 (887)
Q Consensus 86 ~~~c~w~gv~c~~~~~~v~~L~L 108 (887)
..-|+|.|+.|+....+|..+..
T Consensus 75 ~~l~~~~g~i~~~~~~ki~~~v~ 97 (267)
T 3rw6_A 75 SALKAVNYKILDRENRRISIIIN 97 (267)
T ss_dssp HHHHHTTSSCBCTTSCBCCCEEE
T ss_pred HHHHhcCcEEECCCCCEEEEEEe
Confidence 34589999999876556655544
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.39 E-value=2.7e-07 Score=89.37 Aligned_cols=114 Identities=16% Similarity=0.213 Sum_probs=52.9
Q ss_pred HhhcCCCCCEEEccCC-CCCCC----chhhhcCCCCCCEEEcccCCCCCc----cccccCCCCCCcEEeCcCCCCCCc--
Q 040113 201 LVEKLSNLETLDLGYV-SIRST----IPHNLANLSSLTFLSLHSCGLQGR----IQSSLGNLSKLLHLDLSLNELLGE-- 269 (887)
Q Consensus 201 ~~~~l~~L~~L~L~~n-~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~-- 269 (887)
.+...++|++|+|++| .+... +...+...++|++|+|++|.+... +...+...+.|++|+|++|.+...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3444555555555555 44332 223334445555555555555432 222333445555555555555432
Q ss_pred --chhhccCCCCCCEEEc--cCCCCCCc----cchhhhCCCCCCEEEccCCcC
Q 040113 270 --LPVSIGNLHSLKKLDL--SINNLSGE----LPTSIQNLVSLEELDLSFNKL 314 (887)
Q Consensus 270 --~p~~l~~l~~L~~L~L--~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l 314 (887)
+...+...++|++|+| ++|.+... +...+...++|++|++++|.+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2334444455555555 45555432 222333445555555555544
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.26 E-value=8.9e-07 Score=90.05 Aligned_cols=78 Identities=24% Similarity=0.281 Sum_probs=44.1
Q ss_pred CCceeEEEeecCcCCc--cChhhhhcccCCCEEeCCCCcccccCCccccCCC--CCCEEeCCCCcccccCCc-------c
Q 040113 746 PDILTSIILSSNRFDG--MIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLT--NLESLDLSNNNFLGQIPQ-------Q 814 (887)
Q Consensus 746 ~~~L~~L~Ls~N~l~~--~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~--~L~~L~Ls~N~l~~~~p~-------~ 814 (887)
.+.|+.|+|++|+|++ .+|..++.+++|+.|+|++|++++. ..+..+. +|++|+|++|.+.+.+|. .
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 3456666666666665 3345555666666666666666653 2233333 666666666666655442 2
Q ss_pred ccCCCCCCeee
Q 040113 815 LVELTFLEFFN 825 (887)
Q Consensus 815 l~~L~~L~~L~ 825 (887)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 45555665554
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.24 E-value=5.4e-07 Score=87.27 Aligned_cols=93 Identities=19% Similarity=0.168 Sum_probs=48.9
Q ss_pred hhhhcCCCCCCEEEcccC-CCCCc----cccccCCCCCCcEEeCcCCCCCCc----chhhccCCCCCCEEEccCCCCCCc
Q 040113 223 PHNLANLSSLTFLSLHSC-GLQGR----IQSSLGNLSKLLHLDLSLNELLGE----LPVSIGNLHSLKKLDLSINNLSGE 293 (887)
Q Consensus 223 ~~~l~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~ 293 (887)
...+...+.|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.+...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 344556667777777776 65532 233345556666666666666432 223334445566666666655532
Q ss_pred ----cchhhhCCCCCCEEEc--cCCcCC
Q 040113 294 ----LPTSIQNLVSLEELDL--SFNKLS 315 (887)
Q Consensus 294 ----~~~~l~~l~~L~~L~L--~~n~l~ 315 (887)
+...+...++|++|+| ++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 2333444455555555 445443
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.79 E-value=1.2e-05 Score=75.60 Aligned_cols=83 Identities=10% Similarity=0.062 Sum_probs=38.4
Q ss_pred CCCEEEcccCCCCCccccccCCCCCCcEEeCcCCC-CCCcchhhccCC----CCCCEEEccCCC-CCCccchhhhCCCCC
Q 040113 231 SLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNE-LLGELPVSIGNL----HSLKKLDLSINN-LSGELPTSIQNLVSL 304 (887)
Q Consensus 231 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~~L 304 (887)
+|++|++++|.++..--..+.++++|++|+|++|. +++.--..++.+ ++|++|+|++|. ++...-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555444333344455555555555553 333222233332 245555555543 443333344445555
Q ss_pred CEEEccCCc
Q 040113 305 EELDLSFNK 313 (887)
Q Consensus 305 ~~L~L~~n~ 313 (887)
++|++++|.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 555555543
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.65 E-value=2.6e-05 Score=73.32 Aligned_cols=59 Identities=14% Similarity=0.131 Sum_probs=29.5
Q ss_pred CCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCC-CCCccchhhhCC----CCCCEEEccCC
Q 040113 254 SKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINN-LSGELPTSIQNL----VSLEELDLSFN 312 (887)
Q Consensus 254 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~L~~n 312 (887)
.+|++||++++.++..--..+.++++|++|+|++|. ++...-..++.+ ++|++|+|++|
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C 124 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISC 124 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCC
Confidence 346666666665554433444555555555555553 443333334432 24555555554
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.17 E-value=0.00058 Score=65.38 Aligned_cols=111 Identities=17% Similarity=0.192 Sum_probs=52.7
Q ss_pred hhcCCCCCEEEccCC-CCCCC----chhhhcCCCCCCEEEcccCCCCCc----cccccCCCCCCcEEeCcCCCCCCc---
Q 040113 202 VEKLSNLETLDLGYV-SIRST----IPHNLANLSSLTFLSLHSCGLQGR----IQSSLGNLSKLLHLDLSLNELLGE--- 269 (887)
Q Consensus 202 ~~~l~~L~~L~L~~n-~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~--- 269 (887)
+.+-+.|++|+|+++ .+... +...+..-+.|++|+|++|.+.+. +...+..-+.|++|+|++|.|...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 344455555555553 44321 233344445566666666655432 222333445566666666665432
Q ss_pred -chhhccCCCCCCEEEccCC---CCCC----ccchhhhCCCCCCEEEccCC
Q 040113 270 -LPVSIGNLHSLKKLDLSIN---NLSG----ELPTSIQNLVSLEELDLSFN 312 (887)
Q Consensus 270 -~p~~l~~l~~L~~L~L~~n---~l~~----~~~~~l~~l~~L~~L~L~~n 312 (887)
+.+.+..-+.|++|+|++| .+.. .+.+.+..-+.|+.|+++.|
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 2233444455666666543 2221 12333444455555555544
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.68 E-value=0.0017 Score=62.21 Aligned_cols=23 Identities=17% Similarity=0.288 Sum_probs=11.7
Q ss_pred hHHHhhcCCCCCEEEccCCCCCC
Q 040113 198 FANLVEKLSNLETLDLGYVSIRS 220 (887)
Q Consensus 198 ~~~~~~~l~~L~~L~L~~n~~~~ 220 (887)
+...+..-+.|++|+|++|.+..
T Consensus 90 lA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 90 LIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHHHhcCCccCeEecCCCcCCH
Confidence 34444455555555555555543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.61 E-value=0.0031 Score=56.30 Aligned_cols=58 Identities=24% Similarity=0.282 Sum_probs=41.8
Q ss_pred eEEEeecCcCC-ccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccc
Q 040113 750 TSIILSSNRFD-GMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLG 809 (887)
Q Consensus 750 ~~L~Ls~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~ 809 (887)
+.++.+++.++ ..+|..+. .+|+.|+|++|+|+..-++.|..+++|+.|+|++|.+..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 36778888876 35564433 367888888888887667777788888888888887653
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.27 E-value=0.0045 Score=55.27 Aligned_cols=55 Identities=18% Similarity=0.277 Sum_probs=45.5
Q ss_pred ceeeeecccc--ccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCccc
Q 040113 730 SLKMNNKGQI--MTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQ 784 (887)
Q Consensus 730 ~~~~~~~~~~--~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 784 (887)
.+.+...+.. ..+..++..++.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555555 555577889999999999999887888999999999999999875
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=36.96 E-value=31 Score=28.37 Aligned_cols=44 Identities=16% Similarity=0.179 Sum_probs=22.4
Q ss_pred eeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccC
Q 040113 610 QGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQS 654 (887)
Q Consensus 610 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 654 (887)
+.+-..+|.+|++|+.+.|-.+ ++.+-...|.++.+|+.+.+..
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3333445555555555555433 3334344555666666655544
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=36.34 E-value=49 Score=27.14 Aligned_cols=48 Identities=17% Similarity=0.179 Sum_probs=36.3
Q ss_pred CcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCC
Q 040113 583 NNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDN 631 (887)
Q Consensus 583 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N 631 (887)
..++.+...+|.++.+|+.+.|-.+ ++.+-..+|.+|.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3455566678888888888888765 45466778999999999988754
Done!