BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040114
(378 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant
pdb|3OUF|B Chain B, Structure Of A K+ Selective Nak Mutant
Length = 97
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 110 QQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKL 169
Q F+ +L +++G + Y T +P+DALYF VVTL T+GYGD P T F K+
Sbjct: 8 QVLFVLTILTLISGTIFYST------VEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKI 61
Query: 170 FTCVFILIGFGFV 182
FT ++I IG G V
Sbjct: 62 FTILYIFIGIGLV 74
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 233 GTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLV 281
GT+ +E + +D+ Y SV ++TTVGYGD++ T G+ F I+++ +
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFI 69
>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant
pdb|3TCU|B Chain B, Crystal Structure Of Nak2k Channel D68e Mutant
Length = 97
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 110 QQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKL 169
Q F+ +L +++G + Y T +P+DALYF VVTL T+GYG+ P T F K+
Sbjct: 8 QVLFVLTILTLISGTIFYST------VEGLRPIDALYFSVVTLTTVGYGEFSPQTDFGKI 61
Query: 170 FTCVFILIGFGFV 182
FT ++I IG G V
Sbjct: 62 FTILYIFIGIGLV 74
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 233 GTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLV 281
GT+ +E + +D+ Y SV ++TTVGYG+++ T G+ F I+++ +
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGYGEFSPQTDFGKIFTILYIFI 69
>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant
pdb|3T4Z|B Chain B, Crystal Structure Of Nak2k Channel Y55w Mutant
Length = 97
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 110 QQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKL 169
Q F+ +L +++G + Y T +P+DAL+F VVTL T+GYGD P T F K+
Sbjct: 8 QVLFVLTILTLISGTIFYST------VEGLRPIDALWFSVVTLTTVGYGDFSPQTDFGKI 61
Query: 170 FTCVFILIGFGFV 182
FT ++I IG G V
Sbjct: 62 FTILYIFIGIGLV 74
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 233 GTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLV 281
GT+ +E + +D+ + SV ++TTVGYGD++ T G+ F I+++ +
Sbjct: 21 GTIFYSTVEGLRPIDALWFSVVTLTTVGYGDFSPQTDFGKIFTILYIFI 69
>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant
pdb|3T1C|B Chain B, Crystal Structure Of Nak Channel D66y Mutant
Length = 97
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 110 QQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKL 169
Q F+ +L +++G + Y T +P+DALYF VVTL T+GYG+ P T F K+
Sbjct: 8 QVLFVLTILTLISGTIFYST------VEGLRPIDALYFSVVTLTTVGYGNFSPQTDFGKI 61
Query: 170 FTCVFILIGFGFV 182
FT ++I IG G V
Sbjct: 62 FTILYIFIGIGLV 74
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 233 GTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLV 281
GT+ +E + +D+ Y SV ++TTVGYG+++ T G+ F I+++ +
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGYGNFSPQTDFGKIFTILYIFI 69
>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant
pdb|3TET|B Chain B, Crystal Structure Of Nak2k Channel Y66f Mutant
Length = 97
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 110 QQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKL 169
Q F+ +L +++G + Y T +P+DALYF VVTL T+G+GD P T F K+
Sbjct: 8 QVLFVLTILTLISGTIFYST------VEGLRPIDALYFSVVTLTTVGFGDFSPQTDFGKI 61
Query: 170 FTCVFILIGFGFV 182
FT ++I IG G V
Sbjct: 62 FTILYIFIGIGLV 74
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 233 GTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLV 281
GT+ +E + +D+ Y SV ++TTVG+GD++ T G+ F I+++ +
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGFGDFSPQTDFGKIFTILYIFI 69
>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant
pdb|3T4D|B Chain B, Crystal Structure Of Nak2k Channel Y55f Mutant
Length = 97
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 110 QQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKL 169
Q F+ +L +++G + Y T +P+DAL+F VVTL T+GYGD P T F K+
Sbjct: 8 QVLFVLTILTLISGTIFYST------VEGLRPIDALFFSVVTLTTVGYGDFSPQTDFGKI 61
Query: 170 FTCVFILIGFGFV 182
FT ++I IG G V
Sbjct: 62 FTILYIFIGIGLV 74
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 233 GTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLV 281
GT+ +E + +D+ + SV ++TTVGYGD++ T G+ F I+++ +
Sbjct: 21 GTIFYSTVEGLRPIDALFFSVVTLTTVGYGDFSPQTDFGKIFTILYIFI 69
>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant
pdb|3T2M|B Chain B, Crystal Structure Of Nak Channel N68d Mutant
Length = 97
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 110 QQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKL 169
Q F+ +L +++G + Y T +P+DALYF VVTL T+G GD P T F K+
Sbjct: 8 QVLFVLTILTLISGTIFYST------VEGLRPIDALYFSVVTLTTVGDGDFSPQTDFGKI 61
Query: 170 FTCVFILIGFGFV 182
FT ++I IG G V
Sbjct: 62 FTILYIFIGIGLV 74
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 233 GTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLV 281
GT+ +E + +D+ Y SV ++TTVG GD++ T G+ F I+++ +
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGDGDFSPQTDFGKIFTILYIFI 69
>pdb|2Q6A|A Chain A, Crystal Structure Of Nak Channel D66e Mutant
pdb|2Q6A|B Chain B, Crystal Structure Of Nak Channel D66e Mutant
Length = 114
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 110 QQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKL 169
Q F+ +L +++G + Y T + P+DALYF VVTL T+G G+ P T F K+
Sbjct: 25 QVLFVLTILTLISGTIFYSTVEGLR------PIDALYFSVVTLTTVGEGNFSPQTDFGKI 78
Query: 170 FTCVFILIGFGFV 182
FT ++I IG G V
Sbjct: 79 FTILYIFIGIGLV 91
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 31/49 (63%)
Query: 233 GTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLV 281
GT+ +E + +D+ Y SV ++TTVG G+++ T G+ F I+++ +
Sbjct: 38 GTIFYSTVEGLRPIDALYFSVVTLTTVGEGNFSPQTDFGKIFTILYIFI 86
>pdb|2Q67|A Chain A, Crystal Structure Of Nak Channel D66a Mutant
pdb|2Q67|B Chain B, Crystal Structure Of Nak Channel D66a Mutant
Length = 114
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 110 QQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKL 169
Q F+ +L +++G + Y T + P+DALYF VVTL T+G G+ P T F K+
Sbjct: 25 QVLFVLTILTLISGTIFYSTVEGLR------PIDALYFSVVTLTTVGAGNFSPQTDFGKI 78
Query: 170 FTCVFILIGFGFV 182
FT ++I IG G V
Sbjct: 79 FTILYIFIGIGLV 91
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 31/49 (63%)
Query: 233 GTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLV 281
GT+ +E + +D+ Y SV ++TTVG G+++ T G+ F I+++ +
Sbjct: 38 GTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFI 86
>pdb|2Q69|A Chain A, Crystal Structure Of Nak Channel D66n Mutant
pdb|2Q69|B Chain B, Crystal Structure Of Nak Channel D66n Mutant
Length = 114
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 110 QQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKL 169
Q F+ +L +++G + Y T +P+DALYF VVTL T+G G+ P T F K+
Sbjct: 25 QVLFVLTILTLISGTIFYST------VEGLRPIDALYFSVVTLTTVGNGNFSPQTDFGKI 78
Query: 170 FTCVFILIGFGFV 182
FT ++I IG G V
Sbjct: 79 FTILYIFIGIGLV 91
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 31/49 (63%)
Query: 233 GTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLV 281
GT+ +E + +D+ Y SV ++TTVG G+++ T G+ F I+++ +
Sbjct: 38 GTIFYSTVEGLRPIDALYFSVVTLTTVGNGNFSPQTDFGKIFTILYIFI 86
>pdb|2Q68|A Chain A, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
pdb|2Q68|B Chain B, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
Length = 114
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 110 QQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKL 169
Q F+ +L +++G + Y T + P+DALYF VVTL T+G G+ P T F K+
Sbjct: 25 QVLFVLTILTLISGTIFYSTVEGLR------PIDALYFSVVTLTTVGAGNFEPQTDFGKI 78
Query: 170 FTCVFILIGFGFV 182
FT ++I IG G V
Sbjct: 79 FTILYIFIGIGLV 91
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 233 GTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLV 281
GT+ +E + +D+ Y SV ++TTVG G++ T G+ F I+++ +
Sbjct: 38 GTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFEPQTDFGKIFTILYIFI 86
>pdb|2AHY|A Chain A, Na+ Complex Of The Nak Channel
pdb|2AHY|B Chain B, Na+ Complex Of The Nak Channel
pdb|2AHZ|A Chain A, K+ Complex Of The Nak Channel
pdb|2AHZ|B Chain B, K+ Complex Of The Nak Channel
Length = 110
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 110 QQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKL 169
Q F+ +L +++G + Y T + P+DALYF VVTL T+G G+ P T F K+
Sbjct: 25 QVLFVLTILTLISGTIFYSTVEGLR------PIDALYFSVVTLTTVGDGNFSPQTDFGKI 78
Query: 170 FTCVFILIGFGFV 182
FT ++I IG G V
Sbjct: 79 FTILYIFIGIGLV 91
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 31/49 (63%)
Query: 233 GTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLV 281
GT+ +E + +D+ Y SV ++TTVG G+++ T G+ F I+++ +
Sbjct: 38 GTIFYSTVEGLRPIDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFI 86
>pdb|3VOU|A Chain A, The Crystal Structure Of Nak-Navsulp Chimera Channel
pdb|3VOU|B Chain B, The Crystal Structure Of Nak-Navsulp Chimera Channel
Length = 148
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 110 QQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKL 169
Q F+ L + +G + Y T + P+DALYF VVTL T+G G+ P T F K+
Sbjct: 28 QVLFVLTFLTLTSGTIFYSTVEGLR------PLDALYFSVVTLTTVGDGNFSPQTDFGKV 81
Query: 170 FTCVFILIGFGFV 182
FT ++I IG G V
Sbjct: 82 FTILYIFIGIGLV 94
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 230 LAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLV 281
L GT+ +E + +D+ Y SV ++TTVG G+++ T G+ F I+++ +
Sbjct: 38 LTSGTIFYSTVEGLRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFI 89
>pdb|3E83|A Chain A, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E83|B Chain B, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E86|A Chain A, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E86|B Chain B, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E89|A Chain A, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E89|B Chain B, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E8B|A Chain A, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8B|B Chain B, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8F|A Chain A, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8F|B Chain B, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8G|A Chain A, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8G|B Chain B, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8H|A Chain A, Crystal Structure Of The The Open Nak Channel-K+ Complex
pdb|3E8H|B Chain B, Crystal Structure Of The The Open Nak Channel-K+ Complex
Length = 96
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 110 QQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKL 169
Q F+ +L +++G + Y T +P+DALYF VVTL T+G G+ P T F K+
Sbjct: 7 QVLFVLTILTLISGTIFYST------VEGLRPIDALYFSVVTLTTVGDGNFSPQTDFGKI 60
Query: 170 FTCVFILIGFGFV 182
FT ++I IG G V
Sbjct: 61 FTILYIFIGIGLV 73
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 31/49 (63%)
Query: 233 GTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLV 281
GT+ +E + +D+ Y SV ++TTVG G+++ T G+ F I+++ +
Sbjct: 20 GTIFYSTVEGLRPIDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFI 68
>pdb|3UM7|A Chain A, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|3UM7|B Chain B, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|4I9W|A Chain A, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
pdb|4I9W|B Chain B, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
Length = 309
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 15/132 (11%)
Query: 143 DALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGL-------VTYICD 195
A +F + TIGYG++ T +LF + L+G ILL G+ + +
Sbjct: 118 SAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRHGIG 177
Query: 196 RQEAVFLSTMDENRERRMRIRIKVCLALGVVIGCLAI---GTVTVHFLEDMNWVDSFYLS 252
EA+FL R+ + L ++IGCL T ++ED + +++ Y
Sbjct: 178 HIEAIFLKWHVPPELVRV-----LSAMLFLLIGCLLFVLTPTFVFCYMEDWSKLEAIYFV 232
Query: 253 VTSVTTVGYGDY 264
+ ++TTVG+GDY
Sbjct: 233 IVTLTTVGFGDY 244
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 247 DSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVS 282
+F+ S T +TT+GYG+ A T GR F I + LV
Sbjct: 118 SAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVG 153
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 117 VLYILAGIVIYLTNGNFK--GKATFKPVDALYFIVVTLCTIGYGDIVP------DTTFTK 168
+L++L G ++++ F + ++A+YF++VTL T+G+GD V D+ +
Sbjct: 199 MLFLLIGCLLFVLTPTFVFCYMEDWSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQ 258
Query: 169 LFTCVFILIGFGFVDILLNGLVTYI 193
+IL+G + +L + ++
Sbjct: 259 PLVWFWILLGLAYFASVLTTIGNWL 283
>pdb|3RBZ|A Chain A, Mthk Channel, Ca2+-Bound
pdb|3RBZ|B Chain B, Mthk Channel, Ca2+-Bound
pdb|3RBZ|C Chain C, Mthk Channel, Ca2+-Bound
pdb|3RBZ|D Chain D, Mthk Channel, Ca2+-Bound
Length = 340
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 225 VVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAI--IWLLVS 282
+V+ + GT HF+E +W S Y + ++ TVGYGDY+ +T G F + I L ++
Sbjct: 26 LVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIA 85
Query: 283 TLAVARAFL 291
T AVA A L
Sbjct: 86 TFAVAVARL 94
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
Query: 103 KSTPLIVQQAFIGLVLYILAGIVIYLTNG-NFKGKATFKPVDALYFIVVTLCTIGYGDIV 161
K P +++ ++L +LA ++IY T G +F ++ +LY+ VT+ T+GYGD
Sbjct: 10 KHLPRVLKVPATRILLLVLA-VIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDYS 66
Query: 162 PDTTFTKLFTCVFILIGFGFVDILLNGLVTYICDRQEAVFLSTMDENRERRMRI 215
P T FT I++G + + L+T++ +R++ + +D + R + I
Sbjct: 67 PSTPLGMYFTVTLIVLGIATFAVAVARLLTFLINREQMKLIGLIDVAKSRHVVI 120
>pdb|1LNQ|A Chain A, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|B Chain B, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|C Chain C, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|D Chain D, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|E Chain E, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|F Chain F, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|G Chain G, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|H Chain H, Crystal Structure Of Mthk At 3.3 A
Length = 336
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
Query: 103 KSTPLIVQQAFIGLVLYILAGIVIYLTNG-NFKGKATFKPVDALYFIVVTLCTIGYGDIV 161
K P +++ ++L +LA ++IY T G +F ++ +LY+ VT+ T+GYGD
Sbjct: 10 KHLPRVLKVPATRILLLVLA-VIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDYS 66
Query: 162 PDTTFTKLFTCVFILIGFGFVDILLNGLVTYICDRQEAVFLSTMDENRERRMRI 215
P T FT I++G G + + L+ ++ +R++ + +D + R + I
Sbjct: 67 PSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMGLIDVAKSRHVVI 120
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 225 VVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAI--IWLLVS 282
+V+ + GT HF+E +W S Y + ++ TVGYGDY+ +T G F + I L +
Sbjct: 26 LVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIG 85
Query: 283 TLAVA 287
T AVA
Sbjct: 86 TFAVA 90
>pdb|3UKM|A Chain A, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|B Chain B, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|C Chain C, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|D Chain D, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
Length = 280
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 4/134 (2%)
Query: 135 GKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYI- 193
G + AL+F L T GYG VP + K F ++ +IG F + L +V I
Sbjct: 88 GNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRIT 147
Query: 194 --CDRQEAVFLSTMDENRERRMRIRIKVCLALGVVIGCLAIGTVTVHFLE-DMNWVDSFY 250
R+ ++ ++ + I V L V I LE D N+++SFY
Sbjct: 148 VHVTRRPVLYFHIRWGFSKQVVAIVHAVLLGFVTVSCFFFIPAAVFSVLEDDWNFLESFY 207
Query: 251 LSVTSVTTVGYGDY 264
S++T+G GDY
Sbjct: 208 FCFISLSTIGLGDY 221
>pdb|4HYO|A Chain A, Crystal Structure Of Mthk Pore
pdb|4HYO|B Chain B, Crystal Structure Of Mthk Pore
pdb|4HYO|C Chain C, Crystal Structure Of Mthk Pore
pdb|4HYO|D Chain D, Crystal Structure Of Mthk Pore
pdb|4HYO|E Chain E, Crystal Structure Of Mthk Pore
pdb|4HYO|F Chain F, Crystal Structure Of Mthk Pore
pdb|4HYO|G Chain G, Crystal Structure Of Mthk Pore
pdb|4HYO|H Chain H, Crystal Structure Of Mthk Pore
pdb|4HZ3|D Chain D, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|C Chain C, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|A Chain A, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|B Chain B, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|E Chain E, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|F Chain F, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|G Chain G, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|H Chain H, Mthk Pore Crystallized In Presence Of Tbsb
Length = 91
Score = 46.2 bits (108), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 215 IRIKVCLALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCF 274
+++ L +V+ + GT HF+E +W S Y + ++ TVGYGDY+ T G F
Sbjct: 6 LKVPATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYF 65
Query: 275 --AIIWLLVSTLAVA 287
+I L + T AVA
Sbjct: 66 TCTLIVLGIGTFAVA 80
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 117 VLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFIL 176
+L ++ ++IY T G F +LY+ VT+ T+GYGD P T FTC I+
Sbjct: 13 ILLLVLAVIIYGTAG-FHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIV 71
Query: 177 IGFGFVDILLNGLVTYICDR 196
+G G + + L+ ++ +R
Sbjct: 72 LGIGTFAVAVERLLEFLINR 91
>pdb|3LDC|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+
pdb|3LDE|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 100 Mm Na+
Length = 82
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 223 LGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCF--AIIWLL 280
L +V+ + GT HF+E +W S Y + ++ TVGYGDY+ T G F +I L
Sbjct: 7 LLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLG 66
Query: 281 VSTLAVA 287
+ T AVA
Sbjct: 67 IGTFAVA 73
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 117 VLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFIL 176
+L ++ ++IY T G F +LY+ VT+ T+GYGD P T FTC I+
Sbjct: 6 ILLLVLAVIIYGTAG-FHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIV 64
Query: 177 IGFGFVDILLNGLVTYI 193
+G G + + L+ ++
Sbjct: 65 LGIGTFAVAVERLLEFL 81
>pdb|3R65|A Chain A, Mthk Channel Pore E92q Mutant
Length = 82
Score = 45.4 bits (106), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 223 LGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCF--AIIWLL 280
L +V+ + GT HF+E +W S Y + ++ TVGYGDY+ T G F +I L
Sbjct: 7 LLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLG 66
Query: 281 VSTLAVA 287
+ T AVA
Sbjct: 67 IGTFAVA 73
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 117 VLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFIL 176
+L ++ ++IY T G F +LY+ VT+ T+GYGD P T FTC I+
Sbjct: 6 ILLLVLAVIIYGTAG-FHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIV 64
Query: 177 IGFGFVDILLNGLVTYI 193
+G G + + L+ ++
Sbjct: 65 LGIGTFAVAVQRLLEFL 81
>pdb|3K06|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
K+ Complex
pdb|3K06|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
K+ Complex
pdb|3K08|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
Na+ Complex
pdb|3K08|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
Na+ Complex
Length = 96
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 110 QQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKL 169
Q F+ +L +++G + Y T +P+DALYF VVTL T+G P T F K+
Sbjct: 8 QVLFVLTILTLISGTIFYST------VEGLRPIDALYFSVVTLTTVG-NTPPPQTDFGKI 60
Query: 170 FTCVFILIGFGFV 182
FT ++I IG G V
Sbjct: 61 FTILYIFIGIGLV 73
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 233 GTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLV 281
GT+ +E + +D+ Y SV ++TTVG T G+ F I+++ +
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGNTPPPQTDF-GKIFTILYIFI 68
>pdb|3K0D|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
K+ Complex
pdb|3K0D|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
K+ Complex
pdb|3K0G|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
Na+ Complex
pdb|3K0G|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
Na+ Complex
Length = 96
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 110 QQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKL 169
Q F+ +L +++G + Y T + P+DALYF VVTL T+G P T F K+
Sbjct: 8 QVLFVLTILTLISGTIFYSTVEGLR------PIDALYFSVVTLTTVGETP-PPQTDFGKI 60
Query: 170 FTCVFILIGFGFV 182
FT ++I IG G V
Sbjct: 61 FTILYIFIGIGLV 73
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 233 GTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLV 281
GT+ +E + +D+ Y SV ++TTVG T G+ F I+++ +
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGETPPPQTDF-GKIFTILYIFI 68
>pdb|3K03|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
K+ Complex
pdb|3K03|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
K+ Complex
pdb|3K04|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
Na+ Complex
pdb|3K04|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
Na+ Complex
Length = 96
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 110 QQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKL 169
Q F+ +L +++G + Y T + P+DALYF VVTL T+G P T F K+
Sbjct: 8 QVLFVLTILTLISGTIFYSTVEGLR------PIDALYFSVVTLTTVG-DTPPPQTDFGKI 60
Query: 170 FTCVFILIGFGFV 182
FT ++I IG G V
Sbjct: 61 FTILYIFIGIGLV 73
>pdb|3OUS|A Chain A, Mthk Channel Pore T59a Mutant
Length = 82
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 223 LGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCF--AIIWLL 280
L +V+ + GT HF+E +W S Y + ++ VGYGDY+ T G F +I L
Sbjct: 7 LLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIAAVGYGDYSPHTPLGMYFTCTLIVLG 66
Query: 281 VSTLAVA 287
+ T AVA
Sbjct: 67 IGTFAVA 73
Score = 41.6 bits (96), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 117 VLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFIL 176
+L ++ ++IY T G F +LY+ VT+ +GYGD P T FTC I+
Sbjct: 6 ILLLVLAVIIYGTAG-FHFIEGESWTVSLYWTFVTIAAVGYGDYSPHTPLGMYFTCTLIV 64
Query: 177 IGFGFVDILLNGLVTYI 193
+G G + + L+ ++
Sbjct: 65 LGIGTFAVAVERLLEFL 81
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Module In A Closed State In Lipid Membranes, Tetragonal
Crystal Form
pdb|4H37|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
pdb|4H37|B Chain B, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
Length = 137
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 143 DALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTY 192
DAL++ +VT T+GYGDIVP T ++ + +L G F+ ++ + + +
Sbjct: 46 DALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNF 95
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 241 EDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLL 280
E N+ D+ + ++ + TTVGYGD T GR A I +L
Sbjct: 40 EINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMML 79
>pdb|3LDD|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 99 Mm Na+1 MM K+
Length = 82
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 225 VVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCF--AIIWLLVS 282
+V+ + GT HF+E +W S Y + ++ TVGYGDY+ T G F +I L +
Sbjct: 9 LVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPRTPLGMYFTCTLIVLGIG 68
Query: 283 TLAVA 287
T AVA
Sbjct: 69 TFAVA 73
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 117 VLYILAGIVIYLTNG-NFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFI 175
+L ++ ++IY T G +F ++ +LY+ VT+ T+GYGD P T FTC I
Sbjct: 6 ILLLVLAVIIYGTAGFHFIEGESWT--VSLYWTFVTIATVGYGDYSPRTPLGMYFTCTLI 63
Query: 176 LIGFG 180
++G G
Sbjct: 64 VLGIG 68
>pdb|2A9H|A Chain A, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|B Chain B, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|C Chain C, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|D Chain D, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
Length = 155
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 116 LVLYILAG-IVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVF 174
LV+ +LAG + L G A DAL++ V T T+GYGD+ P T + + V
Sbjct: 59 LVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVV 118
Query: 175 ILIGFGFVDILLNGLVTYICDRQE 198
++ G ++ + T+ R++
Sbjct: 119 MVAGITSYGLVFAAVATWFVGREQ 142
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 247 DSFYLSVTSVTTVGYGDYAFTTLTGRCFAII 277
D+ + SV + TTVGYGD TL GRC A++
Sbjct: 87 DALWWSVETATTVGYGDLYPVTLWGRCVAVV 117
>pdb|3EFF|K Chain K, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|L Chain L, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|M Chain M, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|N Chain N, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
Length = 139
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 116 LVLYILAG-IVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVF 174
LV+ +LAG + L G AL++ V T T+GYGD+ P T + +L V
Sbjct: 15 LVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVV 74
Query: 175 ILIGFGFVDILLNGLVTYICDRQE 198
++ G ++ L T+ R++
Sbjct: 75 MVAGITSFGLVTAALATWFVGREQ 98
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 248 SFYLSVTSVTTVGYGDYAFTTLTGRCFAII 277
+ + SV + TTVGYGD TL GR A++
Sbjct: 44 ALWWSVETATTVGYGDLYPVTLWGRLVAVV 73
>pdb|3OGC|C Chain C, Kcsa E71a Variant In Presence Of Na+
Length = 131
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 116 LVLYILAG-IVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVF 174
LV+ +LAG + L G AL++ V T T+GYGD+ P T + +L V
Sbjct: 43 LVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVATATTVGYGDLYPVTLWGRLVAVVV 102
Query: 175 ILIGFGFVDILLNGLVTYICDRQE 198
++ G ++ L T+ R++
Sbjct: 103 MVAGITSFGLVTAALATWFVGREQ 126
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 248 SFYLSVTSVTTVGYGDYAFTTLTGRCFAII 277
+ + SV + TTVGYGD TL GR A++
Sbjct: 72 ALWWSVATATTVGYGDLYPVTLWGRLVAVV 101
>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex
pdb|2A0L|B Chain B, Crystal Structure Of Kvap-33h1 Fv Complex
Length = 241
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 143 DALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLN 187
DAL++ VVT T+GYGD+VP T K+ +L G + +L+
Sbjct: 180 DALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIG 224
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 247 DSFYLSVTSVTTVGYGDYAFTTLTGRCFAI 276
D+ + +V + TTVGYGD T G+ I
Sbjct: 180 DALWWAVVTATTVGYGDVVPATPIGKVIGI 209
>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel
In Complex With An Fab
Length = 223
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 143 DALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLN 187
DAL++ VVT T+GYGD+VP T K+ +L G + +L+
Sbjct: 168 DALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIG 212
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 247 DSFYLSVTSVTTVGYGDYAFTTLTGRCFAI 276
D+ + +V + TTVGYGD T G+ I
Sbjct: 168 DALWWAVVTATTVGYGDVVPATPIGKVIGI 197
>pdb|3IFX|A Chain A, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|B Chain B, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|C Chain C, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|D Chain D, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
Length = 129
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 144 ALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYICDRQE 198
AL++ V T T+GYGD+ P T + +L V ++ G ++ L T+ R++
Sbjct: 65 ALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 248 SFYLSVTSVTTVGYGDYAFTTLTGRCFAII 277
+ + SV + TTVGYGD TL GR A++
Sbjct: 65 ALWWSVETATTVGYGDLYPVTLWGRLVAVV 94
>pdb|2WLL|A Chain A, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 142 VDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLV 190
V A +F V TL T+GYGD+ P T + + I +G + L GLV
Sbjct: 98 VGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGI-ALSTGLV 145
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 246 VDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVA 287
V +F+ SV ++ TVGYGD T+ A + + V +A
Sbjct: 98 VGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIA 139
>pdb|1P7B|A Chain A, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|1P7B|B Chain B, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|2WLL|B Chain B, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 142 VDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLV 190
V A +F V TL T+GYGD+ P T + + I +G + L GLV
Sbjct: 98 VGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGI-ALSTGLV 145
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 246 VDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVA 287
V +F+ SV ++ TVGYGD T+ A + + V +A
Sbjct: 98 VGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIA 139
>pdb|1F6G|A Chain A, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|B Chain B, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|C Chain C, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|D Chain D, Potassium Channel (Kcsa) Full-Length Fold
Length = 160
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 116 LVLYILAG-IVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVF 174
LV+ +LAG + L G AL++ V T T+GYGD+ P T + + V
Sbjct: 36 LVIVLLAGSYLAVLAERGAPGAQLITYPAALWWSVETATTVGYGDLYPVTLWGRCVAVVV 95
Query: 175 ILIGFGFVDILLNGLVTYICDRQE 198
++ G ++ L T+ R++
Sbjct: 96 MVAGITSFGLVTAALATWFVGREQ 119
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 248 SFYLSVTSVTTVGYGDYAFTTLTGRCFAII 277
+ + SV + TTVGYGD TL GRC A++
Sbjct: 65 ALWWSVETATTVGYGDLYPVTLWGRCVAVV 94
>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
pdb|3LNM|D Chain D, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
Length = 514
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 113 FIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDT 164
FIG++L+ A +Y + + DA ++ VV++ T+GYGD+VP T
Sbjct: 351 FIGVILFSSA---VYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTT 399
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 11/76 (14%)
Query: 223 LGVVIGCLAIGTV----TVHFLE----DMNWV---DSFYLSVTSVTTVGYGDYAFTTLTG 271
LG++I L IG + V+F E D + D+F+ +V S+TTVGYGD TT+ G
Sbjct: 343 LGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGG 402
Query: 272 RCFAIIWLLVSTLAVA 287
+ + + L +A
Sbjct: 403 KIVGSLCAIAGVLTIA 418
>pdb|3STZ|C Chain C, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 102
Score = 36.6 bits (83), Expect = 0.022, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 112 AFIGLVLYILAG-IVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLF 170
A + LV+ +LAG + L G AL++ V T T+GYGD+ P T + +L
Sbjct: 10 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLCPVTLWGRLV 69
Query: 171 TCVFILIGFGFVDILLNGLVTYICDRQE 198
V ++ G ++ L T+ R++
Sbjct: 70 AVVVMVAGITSFGLVTAALATWFVGREQ 97
Score = 32.0 bits (71), Expect = 0.59, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 248 SFYLSVTSVTTVGYGDYAFTTLTGRCFAII 277
+ + SV + TTVGYGD TL GR A++
Sbjct: 43 ALWWSVETATTVGYGDLCPVTLWGRLVAVV 72
>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|2R9R|H Chain H, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
Length = 514
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 113 FIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDT 164
FIG++L+ A +Y + + DA ++ VV++ T+GYGD+VP T
Sbjct: 351 FIGVILFSSA---VYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTT 399
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 11/76 (14%)
Query: 223 LGVVIGCLAIGTV----TVHFLE----DMNWV---DSFYLSVTSVTTVGYGDYAFTTLTG 271
LG++I L IG + V+F E D + D+F+ +V S+TTVGYGD TT+ G
Sbjct: 343 LGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGG 402
Query: 272 RCFAIIWLLVSTLAVA 287
+ + + L +A
Sbjct: 403 KIVGSLCAIAGVLTIA 418
>pdb|3STL|C Chain C, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
Length = 103
Score = 36.6 bits (83), Expect = 0.023, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 112 AFIGLVLYILAG-IVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLF 170
A + LV+ +LAG + L G AL++ V T T+GYGD+ P T + +L
Sbjct: 11 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLCPVTLWGRLV 70
Query: 171 TCVFILIGFGFVDILLNGLVTYICDRQE 198
V ++ G ++ L T+ R++
Sbjct: 71 AVVVMVAGITSFGLVTAALATWFVGREQ 98
Score = 32.0 bits (71), Expect = 0.60, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 248 SFYLSVTSVTTVGYGDYAFTTLTGRCFAII 277
+ + SV + TTVGYGD TL GR A++
Sbjct: 44 ALWWSVETATTVGYGDLCPVTLWGRLVAVV 73
>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium
Channel Kv1.2
Length = 499
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 113 FIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDT 164
FIG++L+ A +Y + + DA ++ VV++ T+GYGD+VP T
Sbjct: 336 FIGVILFSSA---VYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTT 384
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 11/76 (14%)
Query: 223 LGVVIGCLAIGTV----TVHFLE----DMNWV---DSFYLSVTSVTTVGYGDYAFTTLTG 271
LG++I L IG + V+F E D + D+F+ +V S+TTVGYGD TT+ G
Sbjct: 328 LGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGG 387
Query: 272 RCFAIIWLLVSTLAVA 287
+ + + L +A
Sbjct: 388 KIVGSLCAIAGVLTIA 403
>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit
Complex
Length = 499
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 113 FIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDT 164
FIG++L+ A +Y + + DA ++ VV++ T+GYGD+VP T
Sbjct: 336 FIGVILFSSA---VYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTT 384
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 11/76 (14%)
Query: 223 LGVVIGCLAIGTV----TVHFLE----DMNWV---DSFYLSVTSVTTVGYGDYAFTTLTG 271
LG++I L IG + V+F E D + D+F+ +V S+TTVGYGD TT+ G
Sbjct: 328 LGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGG 387
Query: 272 RCFAIIWLLVSTLAVA 287
+ + + L +A
Sbjct: 388 KIVGSLCAIAGVLTIA 403
>pdb|2P7T|C Chain C, Crystal Structure Of Kcsa Mutant
Length = 103
Score = 36.6 bits (83), Expect = 0.026, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 248 SFYLSVTSVTTVGYGDYAFTTLTGRCFAII 277
+ + SV++ TTVGYGD TL GRC A++
Sbjct: 44 ALWWSVSTATTVGYGDLYPVTLWGRCVAVV 73
Score = 34.7 bits (78), Expect = 0.090, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 112 AFIGLVLYILAG-IVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLF 170
A + LV+ +LAG + L G AL++ V T T+GYGD+ P T + +
Sbjct: 11 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVSTATTVGYGDLYPVTLWGRCV 70
Query: 171 TCVFILIGFGFVDILLNGLVTYICDRQE 198
V ++ G ++ L T+ R++
Sbjct: 71 AVVVMVAGITSFGLVTAALATWFVGREQ 98
>pdb|3OR7|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71i
Length = 103
Score = 36.2 bits (82), Expect = 0.029, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 112 AFIGLVLYILAG-IVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLF 170
A + LV+ +LAG + L G AL++ V+T T+GYGD+ P T + +
Sbjct: 11 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVITATTVGYGDLYPVTLWGRCV 70
Query: 171 TCVFILIGFGFVDILLNGLVTYICDRQE 198
V ++ G ++ L T+ R++
Sbjct: 71 AVVVMVAGITSFGLVTAALATWFVGREQ 98
Score = 35.4 bits (80), Expect = 0.050, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 248 SFYLSVTSVTTVGYGDYAFTTLTGRCFAII 277
+ + SV + TTVGYGD TL GRC A++
Sbjct: 44 ALWWSVITATTVGYGDLYPVTLWGRCVAVV 73
>pdb|2ATK|C Chain C, Structure Of A Mutant Kcsa K+ Channel
Length = 124
Score = 35.8 bits (81), Expect = 0.038, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 248 SFYLSVTSVTTVGYGDYAFTTLTGRCFAII 277
+ + SV + TTVGYGD TL GRC A++
Sbjct: 65 ALWWSVATATTVGYGDLYPVTLWGRCVAVV 94
Score = 35.4 bits (80), Expect = 0.055, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 112 AFIGLVLYILAG-IVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLF 170
A + LV+ +LAG + L G AL++ V T T+GYGD+ P T + +
Sbjct: 32 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVATATTVGYGDLYPVTLWGRCV 91
Query: 171 TCVFILIGFGFVDILLNGLVTYICDRQE 198
V ++ G ++ L T+ R++
Sbjct: 92 AVVVMVAGITSFGLVTAALATWFVGREQ 119
>pdb|3PJS|K Chain K, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|L Chain L, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|M Chain M, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|N Chain N, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
Length = 166
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 116 LVLYILAG-IVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVF 174
LV+ +LAG + L G AL++ V T T+GYGD+ P T + +L V
Sbjct: 42 LVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVV 101
Query: 175 ILIGFGFVDILLNGLVTYIC 194
++ G ++ L T+
Sbjct: 102 MVAGITSFGLVTAALATWFV 121
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 248 SFYLSVTSVTTVGYGDYAFTTLTGRCFAII 277
+ + SV + TTVGYGD TL GR A++
Sbjct: 71 ALWWSVETATTVGYGDLYPVTLWGRLVAVV 100
>pdb|1ZWI|C Chain C, Structure Of Mutant Kcsa Potassium Channel
Length = 103
Score = 35.8 bits (81), Expect = 0.043, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 248 SFYLSVTSVTTVGYGDYAFTTLTGRCFAII 277
+ + SV + TTVGYGD TL GRC A++
Sbjct: 44 ALWWSVATATTVGYGDLYPVTLWGRCVAVV 73
Score = 35.0 bits (79), Expect = 0.064, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 112 AFIGLVLYILAG-IVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLF 170
A + LV+ +LAG + L G AL++ V T T+GYGD+ P T + +
Sbjct: 11 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVATATTVGYGDLYPVTLWGRCV 70
Query: 171 TCVFILIGFGFVDILLNGLVTYICDRQE 198
V ++ G ++ L T+ R++
Sbjct: 71 AVVVMVAGITSFGLVTAALATWFVGREQ 98
>pdb|3OR6|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71q
Length = 103
Score = 35.8 bits (81), Expect = 0.046, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 248 SFYLSVTSVTTVGYGDYAFTTLTGRCFAII 277
+ + SV + TTVGYGD TL GRC A++
Sbjct: 44 ALWWSVQTATTVGYGDLYPVTLWGRCVAVV 73
Score = 34.7 bits (78), Expect = 0.099, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 112 AFIGLVLYILAG-IVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLF 170
A + LV+ +LAG + L G AL++ V T T+GYGD+ P T + +
Sbjct: 11 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVQTATTVGYGDLYPVTLWGRCV 70
Query: 171 TCVFILIGFGFVDILLNGLVTYICDRQE 198
V ++ G ++ L T+ R++
Sbjct: 71 AVVVMVAGITSFGLVTAALATWFVGREQ 98
>pdb|1JVM|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
Length = 125
Score = 35.4 bits (80), Expect = 0.048, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 248 SFYLSVTSVTTVGYGDYAFTTLTGRCFAII 277
+ + SV + TTVGYGD TL GRC A++
Sbjct: 65 ALWWSVETATTVGYGDLYPVTLWGRCVAVV 94
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 112 AFIGLVLYILAG-IVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLF 170
A + LV+ +LAG + L G AL++ V T T+GYGD+ P T + +
Sbjct: 32 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCV 91
Query: 171 TCVFILIGFGFVDILLNGLVTYICDRQE 198
V ++ G ++ L T+ R++
Sbjct: 92 AVVVMVAGITSFGLVTAALATWFVGREQ 119
>pdb|2JK5|C Chain C, Potassium Channel Kcsa In Complex With Tetrabutylammonium
In High K
pdb|2W0F|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetraoctylammonium
Length = 124
Score = 35.4 bits (80), Expect = 0.048, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 248 SFYLSVTSVTTVGYGDYAFTTLTGRCFAII 277
+ + SV + TTVGYGD TL GRC A++
Sbjct: 65 ALWWSVETATTVGYGDLYPVTLWGRCVAVV 94
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 112 AFIGLVLYILAG-IVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLF 170
A + LV+ +LAG + L G AL++ V T T+GYGD+ P T + +
Sbjct: 32 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCV 91
Query: 171 TCVFILIGFGFVDILLNGLVTYICDRQE 198
V ++ G ++ L T+ R++
Sbjct: 92 AVVVMVAGITSFGLVTAALATWFVGREQ 119
>pdb|2HJF|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetrabutylammonium
(Tba)
pdb|2DWD|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Tl+
pdb|2DWE|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Rb+
Length = 103
Score = 35.4 bits (80), Expect = 0.048, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 248 SFYLSVTSVTTVGYGDYAFTTLTGRCFAII 277
+ + SV + TTVGYGD TL GRC A++
Sbjct: 44 ALWWSVETATTVGYGDLYPVTLWGRCVAVV 73
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 112 AFIGLVLYILAG-IVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLF 170
A + LV+ +LAG + L G AL++ V T T+GYGD+ P T + +
Sbjct: 11 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCV 70
Query: 171 TCVFILIGFGFVDILLNGLVTYICDRQE 198
V ++ G ++ L T+ R++
Sbjct: 71 AVVVMVAGITSFGLVTAALATWFVGREQ 98
>pdb|1J95|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
Length = 125
Score = 35.4 bits (80), Expect = 0.048, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 248 SFYLSVTSVTTVGYGDYAFTTLTGRCFAII 277
+ + SV + TTVGYGD TL GRC A++
Sbjct: 65 ALWWSVETATTVGYGDLYPVTLWGRCVAVV 94
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 112 AFIGLVLYILAG-IVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLF 170
A + LV+ +LAG + L G AL++ V T T+GYGD+ P T + +
Sbjct: 32 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCV 91
Query: 171 TCVFILIGFGFVDILLNGLVTYICDRQE 198
V ++ G ++ L T+ R++
Sbjct: 92 AVVVMVAGITSFGLVTAALATWFVGREQ 119
>pdb|1K4D|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
K+
pdb|1K4C|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of K+
pdb|1R3I|C Chain C, Potassium Channel Kcsa-Fab Complex In Rb+
pdb|1R3J|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of Tl+
pdb|1R3K|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
Tl+
pdb|1R3L|C Chain C, Potassium Channel Kcsa-Fab Complex In Cs+
pdb|2BOB|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetrabutylammonium (Tba)
pdb|2BOC|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetraethylarsonium (Teas)
pdb|2HVJ|C Chain C, Crystal Structure Of Kcsa-fab-tba Complex In Low K+
pdb|2HVK|C Chain C, Crystal Structure Of The Kcsa-Fab-Tba Complex In High K+
pdb|2ITC|C Chain C, Potassium Channel Kcsa-Fab Complex In Sodium Chloride
pdb|2ITD|C Chain C, Potassium Channel Kcsa-Fab Complex In Barium Chloride
pdb|3GB7|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+
pdb|3IGA|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+ And K+
Length = 124
Score = 35.4 bits (80), Expect = 0.048, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 248 SFYLSVTSVTTVGYGDYAFTTLTGRCFAII 277
+ + SV + TTVGYGD TL GRC A++
Sbjct: 65 ALWWSVETATTVGYGDLYPVTLWGRCVAVV 94
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 112 AFIGLVLYILAG-IVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLF 170
A + LV+ +LAG + L G AL++ V T T+GYGD+ P T + +
Sbjct: 32 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCV 91
Query: 171 TCVFILIGFGFVDILLNGLVTYICDRQE 198
V ++ G ++ L T+ R++
Sbjct: 92 AVVVMVAGITSFGLVTAALATWFVGREQ 119
>pdb|1BL8|A Chain A, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|B Chain B, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|C Chain C, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|D Chain D, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|2QTO|A Chain A, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|B Chain B, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|C Chain C, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|D Chain D, An Anisotropic Model For Potassium Channel Kcsa
Length = 97
Score = 35.4 bits (80), Expect = 0.058, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 248 SFYLSVTSVTTVGYGDYAFTTLTGRCFAII 277
+ + SV + TTVGYGD TL GRC A++
Sbjct: 43 ALWWSVETATTVGYGDLYPVTLWGRCVAVV 72
Score = 34.3 bits (77), Expect = 0.13, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 112 AFIGLVLYILAG-IVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLF 170
A + LV+ +LAG + L G AL++ V T T+GYGD+ P T + +
Sbjct: 10 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCV 69
Query: 171 TCVFILIGFGFVDILLNGLVTYICDRQE 198
V ++ G ++ L T+ R++
Sbjct: 70 AVVVMVAGITSFGLVTAALATWFVGREQ 97
>pdb|3HPL|C Chain C, Kcsa E71h-F103a Mutant In The Closed State
Length = 124
Score = 35.0 bits (79), Expect = 0.061, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 248 SFYLSVTSVTTVGYGDYAFTTLTGRCFAII 277
+ + SV + TTVGYGD TL GRC A++
Sbjct: 65 ALWWSVHTATTVGYGDLYPVTLWGRCVAVV 94
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 112 AFIGLVLYILAG-IVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLF 170
A + LV+ +LAG + L G AL++ V T T+GYGD+ P T + +
Sbjct: 32 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVHTATTVGYGDLYPVTLWGRCV 91
Query: 171 TCVFILIGFGFVDILLNGLVTYICDRQE 198
V ++ G ++ L T+ R++
Sbjct: 92 AVVVMVAGITSAGLVTAALATWFVGREQ 119
>pdb|3F5W|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
32 A Opening At T112
pdb|3F7V|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
23 A Opening At T112
pdb|3F7Y|C Chain C, Kcsa Potassium Channel In The Partially Open State With 17
A Opening At T112
pdb|3FB5|C Chain C, Kcsa Potassium Channel In The Partially Open State With
14.5 A Opening At T112
pdb|3FB6|C Chain C, Kcsa Potassium Channel In The Partially Open State With 16
A Opening At T112
pdb|3FB8|C Chain C, Kcsa Potassium Channel In The Open-Conductive State With
20 At T112 In The Presence Of Rb+ Ion
pdb|3FB7|C Chain C, Open Kcsa Potassium Channel In The Presence Of Rb+ Ion
Length = 104
Score = 35.0 bits (79), Expect = 0.070, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 248 SFYLSVTSVTTVGYGDYAFTTLTGRCFAII 277
+ + SV + TTVGYGD TL GRC A++
Sbjct: 45 ALWWSVETATTVGYGDLYPVTLWGRCVAVV 74
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 112 AFIGLVLYILAG-IVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLF 170
A + LV+ +LAG + L G AL++ V T T+GYGD+ P T + +
Sbjct: 12 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCV 71
Query: 171 TCVFILIGFGFVDILLNGLVTY 192
V ++ G ++ L T+
Sbjct: 72 AVVVMVAGITSFGLVTAALATW 93
>pdb|4GX0|A Chain A, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|B Chain B, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|C Chain C, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|D Chain D, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX1|A Chain A, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|B Chain B, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|C Chain C, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|D Chain D, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX2|A Chain A, Gsuk Channel Bound To Nad
pdb|4GX2|B Chain B, Gsuk Channel Bound To Nad
pdb|4GX2|C Chain C, Gsuk Channel Bound To Nad
pdb|4GX2|D Chain D, Gsuk Channel Bound To Nad
Length = 565
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 107 LIVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTF 166
L++ AF+ ++L A I YL + +G+A + + +Y+ + + T+G+GDI ++
Sbjct: 20 LLLYCAFLLVMLLAYASIFRYLM-WHLEGRA-YSFMAGIYWTITVMTTLGFGDITFESDA 77
Query: 167 TKLFTCVFILIGFGFVDILL 186
LF + + G F+DI+L
Sbjct: 78 GYLFASIVTVSGVIFLDIIL 97
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 244 NWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAII 277
+++ Y ++T +TT+G+GD F + G FA I
Sbjct: 51 SFMAGIYWTITVMTTLGFGDITFESDAGYLFASI 84
>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
pdb|2QKS|B Chain B, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
Length = 321
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 144 ALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIG 178
A +F V TL T+GYGD+ P T + + I +G
Sbjct: 82 AFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVG 116
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 248 SFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLV--STLAVARAFLYLTELRIEKR 301
+F+ SV ++ TVGYGD T+ A + + V S++A+A ++ + +KR
Sbjct: 82 AFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKKR 137
>pdb|1S5H|C Chain C, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+
Length = 124
Score = 34.3 bits (77), Expect = 0.12, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 112 AFIGLVLYILAG-IVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLF 170
A + LV+ +LAG + L G AL++ V T +GYGD+ P T + +L
Sbjct: 32 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATCVGYGDLYPVTLWGRLV 91
Query: 171 TCVFILIGFGFVDILLNGLVTYICDRQE 198
V ++ G ++ L T+ R++
Sbjct: 92 AVVVMVAGITSFGLVTAALATWFVGREQ 119
Score = 29.3 bits (64), Expect = 4.1, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 248 SFYLSVTSVTTVGYGDYAFTTLTGRCFAII 277
+ + SV + T VGYGD TL GR A++
Sbjct: 65 ALWWSVETATCVGYGDLYPVTLWGRLVAVV 94
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 107 LIVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTF 166
LI G+VL+ +A + Y+ + + + A+++ VVTL T GYGD +P +
Sbjct: 129 LIGVTTLFGVVLFAVA-LAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFA 187
Query: 167 TKLFTCVFILIGFGFVDILLNGLVT 191
++ ++ G G + L T
Sbjct: 188 GRVLAGAVMMSGIGIFGLWAGILAT 212
>pdb|3O4Y|A Chain A, Crystal Structure Of Cad Domain Of The Plasmodium Vivax
Cdpk, Pvx_11610
Length = 196
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 305 IAKWVLQKKMTLGDLVAADLDNDGSISKSEF--VIYKLKEMGKIAEKDILQICNQFDLID 362
I + L KK+ D+DNDG I+ +E V++ + G I E+D+ Q+ +D
Sbjct: 117 IDRRQLSKKLIYCAFRVFDVDNDGEITTAELAHVLFNGNKRGNITERDVNQVKKMIREVD 176
Query: 363 DSKCGKI 369
+ GKI
Sbjct: 177 KNGDGKI 183
>pdb|2NLJ|C Chain C, Potassium Channel Kcsa(M96v)-Fab Complex In Kcl
Length = 124
Score = 32.0 bits (71), Expect = 0.52, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 248 SFYLSVTSVTTVGYGDYAFTTLTGRC 273
+ + SV + TTVGYGD TL GRC
Sbjct: 65 ALWWSVETATTVGYGDLYPVTLWGRC 90
Score = 30.0 bits (66), Expect = 2.3, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 112 AFIGLVLYILAG-IVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLF 170
A + LV+ +LAG + L G AL++ V T T+GYGD+ P T + +
Sbjct: 32 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCV 91
Query: 171 TCVFILIGFGFVDILLNGLVTYICDRQE 198
V ++ G ++ L T+ R++
Sbjct: 92 AVVVVVAGITSFGLVTAALATWFVGREQ 119
>pdb|4GX5|A Chain A, Gsuk Channel
pdb|4GX5|B Chain B, Gsuk Channel
pdb|4GX5|C Chain C, Gsuk Channel
pdb|4GX5|D Chain D, Gsuk Channel
Length = 565
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 11/89 (12%)
Query: 107 LIVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTF 166
L++ AF+ ++L A I YL + +G+A + + +Y+ + + T+G+GDI ++
Sbjct: 20 LLLYCAFLLVMLLAYASIFRYLM-WHLEGRA-YSFMAGIYWTITVMTTLGFGDITFESDA 77
Query: 167 TKLFTCV---------FILIGFGFVDILL 186
LF + I++ FGFV + L
Sbjct: 78 GYLFASIVTVSGVIFLLIILPFGFVSMFL 106
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 244 NWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAII 277
+++ Y ++T +TT+G+GD F + G FA I
Sbjct: 51 SFMAGIYWTITVMTTLGFGDITFESDAGYLFASI 84
>pdb|2WLI|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 143 DALYFIVVTLCTIGYGDIVP 162
DA +F V T+ TIGYG ++P
Sbjct: 85 DAFFFSVQTMATIGYGKLIP 104
>pdb|1XL4|A Chain A, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL4|B Chain B, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|A Chain A, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|B Chain B, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|2WLH|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLI|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|A Chain A, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|B Chain B, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 143 DALYFIVVTLCTIGYGDIVP 162
DA +F V T+ TIGYG ++P
Sbjct: 85 DAFFFSVQTMATIGYGKLIP 104
>pdb|3ZRS|A Chain A, X-Ray Crystal Structure Of A Kirbac Potassium Channel
Highlights A Mechanism Of Channel Opening At The
Bundle-Crossing Gate
Length = 301
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 143 DALYFIVVTLCTIGYGDIVP 162
DA +F V T+ TIGYG ++P
Sbjct: 85 DAFFFSVQTMATIGYGKLIP 104
>pdb|2WLN|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|E Chain E, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|F Chain F, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|G Chain G, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|H Chain H, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 143 DALYFIVVTLCTIGYGDIVP 162
DA +F V T+ TIGYG ++P
Sbjct: 85 DAFFFSVQTMATIGYGKLIP 104
>pdb|2X6A|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 143 DALYFIVVTLCTIGYGDIVP 162
DA +F V T+ TIGYG ++P
Sbjct: 85 DAFFFSVQTMATIGYGKLIP 104
>pdb|2X6B|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2X6C|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 143 DALYFIVVTLCTIGYGDIVP 162
DA +F V T+ TIGYG ++P
Sbjct: 85 DAFFFSVQTMATIGYGKLIP 104
>pdb|2K1E|A Chain A, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|B Chain B, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|C Chain C, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|D Chain D, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|A Chain A, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|B Chain B, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|C Chain C, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|D Chain D, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
Length = 103
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 243 MNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFA--IIWLLVSTLAVARAFLYLTELRIEK 300
+++ D+ + SV + TTVGYGD T GR A ++ + A+ A L +R E+
Sbjct: 39 ISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREE 98
Query: 301 RNR 303
R
Sbjct: 99 ERR 101
>pdb|3K21|A Chain A, Crystal Structure Of Carboxy-Terminus Of Pfc0420w
Length = 191
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 323 DLDNDGSISKSEF--VIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKI 369
D+DNDG I+ +E ++Y + G I ++D+ ++ +D + GKI
Sbjct: 132 DVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKI 180
>pdb|3QRX|A Chain A, Chlamydomonas Reinhardtii Centrin Bound To Melittin
Length = 169
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 323 DLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADL 374
D D G+I EF+ +MG+ ++ +I F L DD G IT+ DL
Sbjct: 74 DKDGSGTIDFEEFLTMMTAKMGERDSRE--EILKAFRLFDDDNSGTITIKDL 123
>pdb|3KF9|A Chain A, Crystal Structure Of The SdcenSKMLCK COMPLEX
pdb|3KF9|C Chain C, Crystal Structure Of The SdcenSKMLCK COMPLEX
Length = 149
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 322 ADLDNDGS--ISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADL 374
AD+D DGS I EF+ +MG+ ++ +I F L DD + GKI+ +L
Sbjct: 51 ADIDKDGSGTIDFEEFLQMMTAKMGERDSRE--EIMKAFRLFDDDETGKISFKNL 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,114,612
Number of Sequences: 62578
Number of extensions: 384540
Number of successful extensions: 1299
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1151
Number of HSP's gapped (non-prelim): 149
length of query: 378
length of database: 14,973,337
effective HSP length: 100
effective length of query: 278
effective length of database: 8,715,537
effective search space: 2422919286
effective search space used: 2422919286
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)