Query 040114
Match_columns 378
No_of_seqs 405 out of 2633
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 05:17:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040114.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040114hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4404 Tandem pore domain K+ 100.0 2.9E-28 6.3E-33 228.7 16.2 183 111-294 11-244 (350)
2 KOG1418 Tandem pore domain K+ 99.9 6.2E-25 1.3E-29 219.7 6.4 158 133-290 108-296 (433)
3 PF07885 Ion_trans_2: Ion chan 99.4 8.1E-15 1.8E-19 114.0 -1.3 77 115-194 2-78 (79)
4 KOG1419 Voltage-gated K+ chann 99.4 5.3E-14 1.2E-18 140.6 4.1 106 105-210 230-340 (654)
5 KOG3713 Voltage-gated K+ chann 99.4 8.4E-14 1.8E-18 138.6 5.5 96 103-198 340-435 (477)
6 PF07885 Ion_trans_2: Ion chan 99.4 4.3E-14 9.2E-19 109.9 -0.1 70 228-297 5-77 (79)
7 KOG1545 Voltage-gated shaker-l 99.3 5.8E-13 1.3E-17 127.3 3.6 91 103-193 356-446 (507)
8 KOG1419 Voltage-gated K+ chann 99.3 3.6E-13 7.9E-18 134.7 0.4 80 217-296 231-321 (654)
9 PRK10537 voltage-gated potassi 99.3 2.4E-11 5.3E-16 121.6 11.7 76 227-302 145-226 (393)
10 KOG3713 Voltage-gated K+ chann 99.2 4.1E-11 8.8E-16 119.6 11.4 80 220-299 347-432 (477)
11 KOG4404 Tandem pore domain K+ 99.2 2.1E-11 4.6E-16 115.5 6.6 81 104-190 156-244 (350)
12 KOG1420 Ca2+-activated K+ chan 99.1 8.4E-10 1.8E-14 111.1 12.0 81 217-297 248-341 (1103)
13 PLN03192 Voltage-dependent pot 99.0 8.9E-11 1.9E-15 128.4 1.3 90 107-196 201-306 (823)
14 KOG1545 Voltage-gated shaker-l 99.0 6E-10 1.3E-14 106.9 6.0 79 217-295 360-444 (507)
15 KOG4390 Voltage-gated A-type K 99.0 2.1E-10 4.6E-15 110.8 2.3 88 108-195 324-411 (632)
16 PRK10537 voltage-gated potassi 99.0 3.6E-10 7.9E-15 113.2 3.6 81 117-198 145-226 (393)
17 KOG1420 Ca2+-activated K+ chan 98.9 3.7E-10 8E-15 113.6 2.9 118 71-197 222-345 (1103)
18 PLN03192 Voltage-dependent pot 98.8 5.9E-09 1.3E-13 114.2 6.8 55 245-299 251-305 (823)
19 KOG1418 Tandem pore domain K+ 98.7 1.2E-08 2.7E-13 102.0 5.3 59 241-299 112-170 (433)
20 KOG4390 Voltage-gated A-type K 98.6 4.6E-09 9.9E-14 101.7 -2.3 75 220-294 326-406 (632)
21 KOG0498 K+-channel ERG and rel 98.4 1.4E-07 3E-12 100.1 2.1 90 108-197 234-351 (727)
22 KOG0498 K+-channel ERG and rel 98.4 3.3E-07 7.1E-12 97.3 4.8 97 245-351 295-400 (727)
23 KOG3193 K+ channel subunit [In 98.2 1E-05 2.2E-10 81.7 9.9 85 217-301 185-274 (1087)
24 KOG3193 K+ channel subunit [In 98.0 4.3E-06 9.4E-11 84.4 4.1 64 134-197 211-274 (1087)
25 KOG3684 Ca2+-activated K+ chan 97.9 6.2E-06 1.3E-10 82.0 2.9 59 136-194 283-341 (489)
26 KOG3684 Ca2+-activated K+ chan 97.9 5E-06 1.1E-10 82.7 1.5 69 228-296 263-339 (489)
27 PF01007 IRK: Inward rectifier 97.6 6.3E-06 1.4E-10 81.0 -2.2 92 104-195 33-141 (336)
28 KOG0501 K+-channel KCNQ [Inorg 97.4 0.00012 2.6E-09 74.8 3.5 54 141-194 424-477 (971)
29 KOG0501 K+-channel KCNQ [Inorg 97.3 0.00022 4.8E-09 72.9 3.8 53 245-297 424-476 (971)
30 PF01007 IRK: Inward rectifier 97.0 0.00013 2.8E-09 71.8 -0.3 52 243-294 83-136 (336)
31 KOG0500 Cyclic nucleotide-gate 96.5 0.0024 5.2E-08 64.5 4.0 90 106-196 128-238 (536)
32 KOG3827 Inward rectifier K+ ch 96.2 0.007 1.5E-07 59.6 5.1 90 104-193 61-167 (400)
33 PF13499 EF-hand_7: EF-hand do 94.9 0.012 2.7E-07 43.2 1.2 55 321-376 8-64 (66)
34 PF00520 Ion_trans: Ion transp 94.8 0.0056 1.2E-07 54.0 -0.9 49 139-187 144-198 (200)
35 KOG0027 Calmodulin and related 93.6 0.04 8.6E-07 47.8 1.9 55 321-375 52-108 (151)
36 KOG3827 Inward rectifier K+ ch 93.5 0.23 5E-06 49.2 7.1 48 244-291 112-161 (400)
37 TIGR00933 2a38 potassium uptak 93.3 0.009 2E-07 60.2 -3.0 142 140-282 231-389 (390)
38 PRK10750 potassium transporter 93.3 0.042 9.1E-07 56.9 1.8 39 244-282 304-344 (483)
39 PF13202 EF-hand_5: EF hand; P 92.9 0.029 6.3E-07 33.5 -0.1 21 355-375 2-22 (25)
40 KOG0500 Cyclic nucleotide-gate 92.6 0.16 3.5E-06 51.7 4.7 50 248-298 187-236 (536)
41 KOG0499 Cyclic nucleotide-gate 92.3 0.041 9E-07 57.0 0.2 86 108-194 363-456 (815)
42 KOG0499 Cyclic nucleotide-gate 91.3 0.12 2.5E-06 53.8 2.0 55 241-296 400-454 (815)
43 PF00036 EF-hand_1: EF hand; 91.2 0.065 1.4E-06 33.2 0.2 22 354-375 2-23 (29)
44 PF00060 Lig_chan: Ligand-gate 90.1 0.048 1E-06 46.4 -1.6 87 111-198 4-101 (148)
45 PF00520 Ion_trans: Ion transp 90.0 0.21 4.6E-06 43.8 2.4 48 244-291 145-198 (200)
46 PF13405 EF-hand_6: EF-hand do 89.2 0.11 2.5E-06 32.3 0.0 22 354-375 2-23 (31)
47 PF13833 EF-hand_8: EF-hand do 86.8 0.35 7.5E-06 33.9 1.3 45 327-375 2-48 (54)
48 smart00027 EH Eps15 homology d 86.6 0.37 8.1E-06 38.3 1.5 30 346-375 4-33 (96)
49 cd00052 EH Eps15 homology doma 86.2 0.72 1.6E-05 33.3 2.8 50 321-375 7-56 (67)
50 TIGR00933 2a38 potassium uptak 85.6 0.25 5.3E-06 49.8 0.0 148 138-285 13-175 (390)
51 cd05029 S-100A6 S-100A6: S-100 83.5 0.9 2E-05 35.8 2.4 46 327-375 26-74 (88)
52 PRK05482 potassium-transportin 83.3 0.27 5.9E-06 51.4 -0.9 41 243-283 450-492 (559)
53 KOG0044 Ca2+ sensor (EF-Hand s 82.4 1.1 2.3E-05 40.8 2.7 58 319-376 106-171 (193)
54 cd05022 S-100A13 S-100A13: S-1 82.3 1.2 2.6E-05 35.2 2.7 47 325-375 21-70 (89)
55 PF13499 EF-hand_7: EF-hand do 81.6 0.48 1E-05 34.5 0.2 23 353-375 1-23 (66)
56 PRK10750 potassium transporter 81.5 0.25 5.5E-06 51.2 -1.9 56 226-282 404-465 (483)
57 cd05026 S-100Z S-100Z: S-100Z 80.9 2.2 4.7E-05 33.9 3.7 50 323-375 21-76 (93)
58 PTZ00183 centrin; Provisional 80.3 2 4.3E-05 36.6 3.6 52 321-375 98-149 (158)
59 cd00051 EFh EF-hand, calcium b 79.2 2.3 4.9E-05 29.1 3.0 50 322-375 9-59 (63)
60 KOG0036 Predicted mitochondria 78.8 1.3 2.9E-05 44.4 2.2 47 320-374 58-104 (463)
61 PLN02964 phosphatidylserine de 78.1 1.6 3.5E-05 46.8 2.7 50 322-375 188-238 (644)
62 KOG0034 Ca2+/calmodulin-depend 78.0 2.1 4.6E-05 38.7 3.1 54 321-374 112-169 (187)
63 PTZ00184 calmodulin; Provision 77.3 2.5 5.5E-05 35.3 3.3 50 321-374 92-142 (149)
64 KOG4440 NMDA selective glutama 76.0 1.1 2.3E-05 47.2 0.6 84 111-194 572-667 (993)
65 PTZ00183 centrin; Provisional 75.6 2.1 4.5E-05 36.4 2.3 51 322-375 62-113 (158)
66 cd05027 S-100B S-100B: S-100B 74.3 4.1 8.8E-05 32.0 3.5 48 324-375 20-74 (88)
67 cd05023 S-100A11 S-100A11: S-1 74.3 3.8 8.3E-05 32.3 3.3 50 323-375 20-75 (89)
68 PTZ00184 calmodulin; Provision 73.7 3.5 7.5E-05 34.4 3.2 52 322-375 56-107 (149)
69 PF00060 Lig_chan: Ligand-gate 73.2 2.7 6E-05 35.4 2.5 55 244-299 44-98 (148)
70 cd00252 SPARC_EC SPARC_EC; ext 73.1 2.3 4.9E-05 35.4 1.8 47 321-374 56-102 (116)
71 COG5126 FRQ1 Ca2+-binding prot 72.9 2.9 6.2E-05 36.9 2.5 52 320-375 99-151 (160)
72 KOG1052 Glutamate-gated kainat 72.8 1.9 4.2E-05 46.3 1.7 86 109-195 342-435 (656)
73 cd00252 SPARC_EC SPARC_EC; ext 69.6 2.2 4.8E-05 35.5 1.1 29 347-375 43-71 (116)
74 cd05031 S-100A10_like S-100A10 69.6 4.9 0.00011 31.7 3.0 47 325-375 21-74 (94)
75 cd05025 S-100A1 S-100A1: S-100 69.5 4.8 0.0001 31.6 2.9 48 324-375 21-75 (92)
76 PF02386 TrkH: Cation transpor 69.3 0.19 4E-06 50.0 -6.5 141 141-282 177-338 (354)
77 KOG0031 Myosin regulatory ligh 68.7 2.2 4.7E-05 37.3 0.8 30 347-376 27-56 (171)
78 smart00027 EH Eps15 homology d 68.4 6 0.00013 31.2 3.3 50 321-375 18-67 (96)
79 PRK12438 hypothetical protein; 67.5 21 0.00045 40.2 8.2 32 255-286 244-275 (991)
80 cd00213 S-100 S-100: S-100 dom 66.0 6.1 0.00013 30.5 2.9 50 322-375 17-74 (88)
81 KOG1054 Glutamate-gated AMPA-t 65.8 1.7 3.7E-05 45.5 -0.5 85 109-194 547-648 (897)
82 KOG0038 Ca2+-binding kinase in 65.4 9 0.0002 33.2 3.9 56 319-375 114-172 (189)
83 TIGR00934 2a38euk potassium up 64.9 2.4 5.1E-05 46.3 0.4 60 223-285 588-662 (800)
84 cd05030 calgranulins Calgranul 64.2 7.2 0.00016 30.5 2.9 47 326-375 23-74 (88)
85 KOG0028 Ca2+-binding protein ( 63.9 5.9 0.00013 34.9 2.5 17 357-373 111-127 (172)
86 cd00213 S-100 S-100: S-100 dom 63.7 3.3 7.2E-05 32.0 0.9 28 348-375 4-33 (88)
87 COG5126 FRQ1 Ca2+-binding prot 60.0 6.2 0.00013 34.8 2.0 47 326-375 68-115 (160)
88 KOG0027 Calmodulin and related 60.0 10 0.00022 32.5 3.4 52 320-374 92-143 (151)
89 smart00054 EFh EF-hand, calciu 58.0 3 6.5E-05 23.6 -0.2 21 355-375 3-23 (29)
90 cd00052 EH Eps15 homology doma 57.9 3 6.5E-05 29.9 -0.3 21 355-375 2-22 (67)
91 PF02386 TrkH: Cation transpor 57.2 0.33 7E-06 48.2 -7.4 38 246-283 178-217 (354)
92 TIGR00934 2a38euk potassium up 56.7 3.2 7E-05 45.3 -0.4 70 111-181 586-662 (800)
93 KOG0044 Ca2+ sensor (EF-Hand s 56.4 9.4 0.0002 34.7 2.6 51 321-375 72-123 (193)
94 KOG0377 Protein serine/threoni 54.2 8.3 0.00018 39.2 2.0 54 320-376 554-611 (631)
95 PRK12309 transaldolase/EF-hand 53.6 8.8 0.00019 38.8 2.2 40 320-375 341-380 (391)
96 cd05022 S-100A13 S-100A13: S-1 52.4 7.2 0.00016 30.8 1.1 28 348-375 4-32 (89)
97 KOG3676 Ca2+-permeable cation 52.0 10 0.00022 41.2 2.5 84 108-191 543-645 (782)
98 KOG4223 Reticulocalbin, calume 50.4 7.8 0.00017 37.8 1.2 55 319-375 169-223 (325)
99 KOG3676 Ca2+-permeable cation 50.2 47 0.001 36.3 7.0 71 224-294 549-644 (782)
100 KOG0037 Ca2+-binding protein, 50.0 11 0.00023 34.8 2.0 47 322-377 103-149 (221)
101 COG0168 TrkG Trk-type K+ trans 47.9 28 0.0006 36.4 4.9 46 238-284 192-244 (499)
102 KOG1053 Glutamate-gated NMDA-t 47.2 7.9 0.00017 42.6 0.7 54 138-195 607-664 (1258)
103 KOG0036 Predicted mitochondria 45.8 18 0.00039 36.6 2.9 52 319-374 88-140 (463)
104 cd05024 S-100A10 S-100A10: A s 45.7 12 0.00025 29.9 1.3 45 327-374 21-70 (91)
105 cd05025 S-100A1 S-100A1: S-100 44.7 11 0.00024 29.5 1.0 27 349-375 6-34 (92)
106 cd05031 S-100A10_like S-100A10 44.6 11 0.00023 29.7 0.9 26 350-375 6-33 (94)
107 PF14788 EF-hand_10: EF hand; 44.2 18 0.00038 25.6 1.9 23 353-375 22-44 (51)
108 PLN02964 phosphatidylserine de 44.1 20 0.00043 38.7 3.1 50 321-375 151-202 (644)
109 PF10591 SPARC_Ca_bdg: Secrete 44.1 8.9 0.00019 31.7 0.4 32 344-375 46-77 (113)
110 KOG0031 Myosin regulatory ligh 44.0 16 0.00035 32.0 2.0 60 314-375 65-124 (171)
111 cd05027 S-100B S-100B: S-100B 43.7 12 0.00027 29.3 1.2 28 348-375 4-33 (88)
112 PF12763 EF-hand_4: Cytoskelet 42.3 7 0.00015 31.8 -0.4 30 344-374 2-31 (104)
113 PF14658 EF-hand_9: EF-hand do 42.1 21 0.00045 26.7 2.1 51 320-374 5-58 (66)
114 COG0168 TrkG Trk-type K+ trans 40.9 18 0.00039 37.8 2.2 58 225-282 405-470 (499)
115 cd05026 S-100Z S-100Z: S-100Z 40.7 13 0.00029 29.3 0.9 27 349-375 7-35 (93)
116 PRK00068 hypothetical protein; 37.9 1.8E+02 0.0039 33.0 9.4 31 255-285 244-274 (970)
117 PF07077 DUF1345: Protein of u 35.0 21 0.00045 32.1 1.4 41 242-282 130-170 (180)
118 KOG4223 Reticulocalbin, calume 33.5 22 0.00047 34.8 1.3 55 321-375 208-264 (325)
119 KOG4440 NMDA selective glutama 31.6 14 0.0003 39.3 -0.4 54 243-296 612-665 (993)
120 KOG4251 Calcium binding protei 30.2 99 0.0021 29.3 4.9 56 315-370 142-208 (362)
121 KOG1052 Glutamate-gated kainat 29.9 1E+02 0.0022 33.2 5.8 52 246-298 383-434 (656)
122 PF00404 Dockerin_1: Dockerin 29.0 17 0.00036 20.8 -0.2 14 362-375 1-14 (21)
123 cd05029 S-100A6 S-100A6: S-100 27.4 29 0.00063 27.1 0.9 28 348-375 6-35 (88)
124 PRK05482 potassium-transportin 27.1 25 0.00055 37.1 0.6 40 139-178 450-491 (559)
125 PF02268 TFIIA_gamma_N: Transc 25.6 95 0.0021 21.8 3.1 26 335-360 17-42 (49)
126 PF07077 DUF1345: Protein of u 24.8 13 0.00028 33.4 -1.8 52 134-185 126-177 (180)
127 cd05023 S-100A11 S-100A11: S-1 24.7 39 0.00085 26.5 1.2 28 348-375 5-34 (89)
128 PF03699 UPF0182: Uncharacteri 23.6 1.5E+02 0.0032 32.9 5.6 31 255-285 232-262 (774)
129 KOG2562 Protein phosphatase 2 21.9 53 0.0012 33.7 1.8 48 325-375 327-374 (493)
130 KOG0034 Ca2+/calmodulin-depend 21.7 85 0.0018 28.4 2.9 49 325-375 78-127 (187)
131 KOG0041 Predicted Ca2+-binding 21.3 70 0.0015 29.4 2.2 49 320-368 142-191 (244)
No 1
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.9e-28 Score=228.70 Aligned_cols=183 Identities=21% Similarity=0.378 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHhhhh-hccc---------------------------------------ccCCCCCCCccceeeeeee
Q 040114 111 QAFIGLVLYILAGIVIY-LTNG---------------------------------------NFKGKATFKPVDALYFIVV 150 (378)
Q Consensus 111 ~~~~~l~~~l~~g~~~~-~~~~---------------------------------------~~~~~~~~~~~~a~yf~~v 150 (378)
+++++.+.|+++|+.+| ..|. ..+....|.|..||||+.+
T Consensus 11 ~Livct~tYLLvGAaVFdaLEse~E~~~r~~l~~~~~~~~~kyn~s~~d~r~~er~i~~s~ph~ag~qWkF~GaFYFa~T 90 (350)
T KOG4404|consen 11 LLIVCTFTYLLVGAAVFDALESENEARERERLERRLANLKRKYNLSEEDYRELERVILKSEPHKAGPQWKFAGAFYFATT 90 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCccccccccccCcceEEEEE
Confidence 35567788999999999 4331 1123346999999999999
Q ss_pred eeeeeecccccccCccCceeeehhhhhhhhhhhhhhcchhhhhhhhHHHHHhhhhhhhhhhh---hhHHHHHHHHHHHHH
Q 040114 151 TLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYICDRQEAVFLSTMDENRERR---MRIRIKVCLALGVVI 227 (378)
Q Consensus 151 tltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~~~~~~~~l~~~~~~~l~r~~~~~~~~~---~~~~~~~~~~~~~~i 227 (378)
.+||||||.-.|.|..||+||++|.++|+++..+++..++..+.... ..++++.++..-.+ ...-..+...+...+
T Consensus 91 VItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERlnt~~-ayil~~~r~~~~~r~~~~S~~~l~~i~~~~~~ 169 (350)
T KOG4404|consen 91 VITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERLNTFV-AYILRRCRRRLGRRRWDVSVYNLVLILFTACI 169 (350)
T ss_pred EEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888876665432 23334443322111 111122333344456
Q ss_pred hhhhhhcceeecccccccccceeEEEEEEeccccCCcccCCc--------chhHHHHHHHHHHHHHHHHHHHHHH
Q 040114 228 GCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTL--------TGRCFAIIWLLVSTLAVARAFLYLT 294 (378)
Q Consensus 228 ~~~~~g~~~~~~~e~~~~~da~Y~~~~T~tTVGyGD~~p~t~--------~gr~f~~~~il~g~~~va~~~~~l~ 294 (378)
++++.|+.+|..+|+|+|+||+||||+|+|||||||+++... ..+.|..+||++|+.+++.+++.+.
T Consensus 170 ~~i~~gaa~fs~~E~Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~Nllv 244 (350)
T KOG4404|consen 170 LLICCGAAMFSSVEGWSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLV 244 (350)
T ss_pred HHHHhhHHHhhcccCcchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999998643 4588999999999999988887665
No 2
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=99.91 E-value=6.2e-25 Score=219.71 Aligned_cols=158 Identities=28% Similarity=0.520 Sum_probs=129.4
Q ss_pred cCCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhhhhcchhhhhhhhHHHHHhh-----hhhh
Q 040114 133 FKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYICDRQEAVFLS-----TMDE 207 (378)
Q Consensus 133 ~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~~~~~~~~l~~~~~~~l~r-----~~~~ 207 (378)
....+.|+|.+|+|||++++||||||+++|.|..||++|++|+++|||++.++++.+++++.+.......+ ....
T Consensus 108 ~~~~~~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~~~~~~~~~~~~~ 187 (433)
T KOG1418|consen 108 SPDTQQWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRKLYRRRHVELQRDR 187 (433)
T ss_pred CCCCcceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 34566799999999999999999999999999999999999999999999999999999888776654431 0000
Q ss_pred hhh---------------hhhhH---HHHHHHHHHHHHhhhhhhcceeecccccccccceeEEEEEEeccccCCcccCCc
Q 040114 208 NRE---------------RRMRI---RIKVCLALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTL 269 (378)
Q Consensus 208 ~~~---------------~~~~~---~~~~~~~~~~~i~~~~~g~~~~~~~e~~~~~da~Y~~~~T~tTVGyGD~~p~t~ 269 (378)
.+. ..... +..+..++.++++++..|+.++...|+|+|++|+||+++|+|||||||++|.+.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~w~f~~~~Yf~fisltTIG~GD~vp~~~ 267 (433)
T KOG1418|consen 188 IRSNLRRSIGLRNRSVELGIELLDELRFILLLLLGISLVYLSPGSLLFSLQEQWSFIEAFYFSFISLTTIGFGDIVPRTL 267 (433)
T ss_pred hhhhhhccccchhcccccchhhccCcceehhhhheeeEEEecccceeeeceeceeeEeeeeEEEEEeeeecCCccccCCC
Confidence 000 00111 344555566667778899999999999999999999999999999999999998
Q ss_pred chh--------HHHHHHHHHHHHHHHHHH
Q 040114 270 TGR--------CFAIIWLLVSTLAVARAF 290 (378)
Q Consensus 270 ~gr--------~f~~~~il~g~~~va~~~ 290 (378)
.++ .+..+++++|...++...
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 268 LGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred cceeeccccccchhHHHHHhhhhHHHHHh
Confidence 877 688899999988888776
No 3
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.44 E-value=8.1e-15 Score=113.97 Aligned_cols=77 Identities=35% Similarity=0.687 Sum_probs=62.5
Q ss_pred HHHHHHHHHhhhhhcccccCCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhhhhcchhhhhh
Q 040114 115 GLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYIC 194 (378)
Q Consensus 115 ~l~~~l~~g~~~~~~~~~~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~~~~~~~~l~ 194 (378)
+++++++.|++.+... ++.+.|++.|++||+++|+|||||||++|.++.||++++++++.|++++++.++.+.+.+.
T Consensus 2 ~~~~~l~~~~~~~~~~---~~~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 2 ILLLVLAFGAIFFYIS---EGSEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp HHHHHHHHHHHHHHHT---TSSSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeeHHHHHHHHHH---HhcccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556667777777442 2256899999999999999999999999999999999999999999999999988876654
No 4
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.44 E-value=5.3e-14 Score=140.60 Aligned_cols=106 Identities=28% Similarity=0.497 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhcccccCC----CCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhh
Q 040114 105 TPLIVQQAFIGLVLYILAGIVIYLTNGNFKG----KATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFG 180 (378)
Q Consensus 105 ~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~----~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~ 180 (378)
++.++..++|.+++.++.+.++|+.|....+ .+.-+|.||+||.++|+|||||||.+|+|+.||+++++|.++|+.
T Consensus 230 ~~ELiTt~YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiS 309 (654)
T KOG1419|consen 230 SKELITTWYIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGIS 309 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHH
Confidence 4567888899999999999999999876433 344679999999999999999999999999999999999999999
Q ss_pred hhhhhhcchhh-hhhhhHHHHHhhhhhhhhh
Q 040114 181 FVDILLNGLVT-YICDRQEAVFLSTMDENRE 210 (378)
Q Consensus 181 ~~~~~~~~~~~-~l~~~~~~~l~r~~~~~~~ 210 (378)
+|++..+.++. +.++.|+++-+++++++++
T Consensus 310 FFALPAGILGSGfALKVQeq~RQKHf~rrr~ 340 (654)
T KOG1419|consen 310 FFALPAGILGSGFALKVQEQHRQKHFNRRRN 340 (654)
T ss_pred HHhcccccccchhhhhhHHHHHHHHHHhhcc
Confidence 99999888876 4456677766666665543
No 5
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.44 E-value=8.4e-14 Score=138.57 Aligned_cols=96 Identities=21% Similarity=0.288 Sum_probs=83.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhh
Q 040114 103 KSTPLIVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFV 182 (378)
Q Consensus 103 ~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~ 182 (378)
.+.+.+..+++++.+...++++++|+.|+........+.+-++|||++|||||||||.+|.|..||+++...++.||.++
T Consensus 340 ~S~~ElglLllfL~~GI~iFStlvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvl 419 (477)
T KOG3713|consen 340 RSYRELGLLLLFLAVGIVIFSTLVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVL 419 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHh
Confidence 34556777777888888999999999998777777889999999999999999999999999999999999999999999
Q ss_pred hhhhcchhhhhhhhHH
Q 040114 183 DILLNGLVTYICDRQE 198 (378)
Q Consensus 183 ~~~~~~~~~~l~~~~~ 198 (378)
++.++.+++.+..-+.
T Consensus 420 AlPItiIv~nF~~~y~ 435 (477)
T KOG3713|consen 420 ALPITIIVNNFSMYYS 435 (477)
T ss_pred hcchHhHhhhHHHHHH
Confidence 9999988877664433
No 6
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.39 E-value=4.3e-14 Score=109.90 Aligned_cols=70 Identities=33% Similarity=0.549 Sum_probs=57.9
Q ss_pred hhhhhhcceeec---ccccccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040114 228 GCLAIGTVTVHF---LEDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELR 297 (378)
Q Consensus 228 ~~~~~g~~~~~~---~e~~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~~~ 297 (378)
+++..|+..++. .|+|++.||+||+++|+|||||||++|.++.||++++++++.|+.+++..++.+++..
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l 77 (79)
T PF07885_consen 5 LVLAFGAIFFYISEGSEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVL 77 (79)
T ss_dssp HHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555 5679999999999999999999999999999999999999999999999999888764
No 7
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.33 E-value=5.8e-13 Score=127.31 Aligned_cols=91 Identities=23% Similarity=0.308 Sum_probs=80.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhh
Q 040114 103 KSTPLIVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFV 182 (378)
Q Consensus 103 ~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~ 182 (378)
.+.+.+-.+++++++..++++..+|+.|.........+..|||||++||||||||||.+|.|..||++..++++.|+..+
T Consensus 356 aSmrElgLLIFFlfIgviLFsSavYFAEade~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTi 435 (507)
T KOG1545|consen 356 ASMRELGLLIFFLFIGVILFSSAVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTI 435 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHhceeeeeecCCCccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEe
Confidence 45667778888888888899999998887766667788999999999999999999999999999999999999999999
Q ss_pred hhhhcchhhhh
Q 040114 183 DILLNGLVTYI 193 (378)
Q Consensus 183 ~~~~~~~~~~l 193 (378)
++.+..+++.+
T Consensus 436 ALPVPVIVsNF 446 (507)
T KOG1545|consen 436 ALPVPVIVSNF 446 (507)
T ss_pred cccccEEEecc
Confidence 99888887654
No 8
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.30 E-value=3.6e-13 Score=134.73 Aligned_cols=80 Identities=23% Similarity=0.247 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhhhhhhcceeecccc-----------cccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHH
Q 040114 217 IKVCLALGVVIGCLAIGTVTVHFLED-----------MNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLA 285 (378)
Q Consensus 217 ~~~~~~~~~~i~~~~~g~~~~~~~e~-----------~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~ 285 (378)
+.+...+-+-++++++.+.+.|..|. -+|-||+||.++|+|||||||.+|.|+.||+++.++.++|+.+
T Consensus 231 ~ELiTt~YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSF 310 (654)
T KOG1419|consen 231 KELITTWYIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISF 310 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHH
Confidence 33444444445556666666676663 3789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 040114 286 VARAFLYLTEL 296 (378)
Q Consensus 286 va~~~~~l~~~ 296 (378)
|+..-+.+++-
T Consensus 311 FALPAGILGSG 321 (654)
T KOG1419|consen 311 FALPAGILGSG 321 (654)
T ss_pred Hhcccccccch
Confidence 99877766654
No 9
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.27 E-value=2.4e-11 Score=121.59 Aligned_cols=76 Identities=24% Similarity=0.343 Sum_probs=62.2
Q ss_pred Hhhhhhhcceeecccc------cccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040114 227 IGCLAIGTVTVHFLED------MNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRIEK 300 (378)
Q Consensus 227 i~~~~~g~~~~~~~e~------~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~~~~~~ 300 (378)
..++..|+.+++.+|+ +++.||+||+++|+|||||||++|.+..||+|++++++.|++++++.++.+....+++
T Consensus 145 ~~l~~~~~~g~~~~~~~f~~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~i~~ 224 (393)
T PRK10537 145 TSLLFYSTFGALYLGDGFSPPIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPVIRG 224 (393)
T ss_pred HHHHHHHHHHHHHHccccCcCCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566665555553 6899999999999999999999999999999999999999999999888777655554
Q ss_pred HH
Q 040114 301 RN 302 (378)
Q Consensus 301 ~~ 302 (378)
+.
T Consensus 225 ~l 226 (393)
T PRK10537 225 NL 226 (393)
T ss_pred HH
Confidence 43
No 10
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.25 E-value=4.1e-11 Score=119.58 Aligned_cols=80 Identities=25% Similarity=0.341 Sum_probs=62.1
Q ss_pred HHHHHHHHhhhhhhcceeecccc------cccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 040114 220 CLALGVVIGCLAIGTVTVHFLED------MNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYL 293 (378)
Q Consensus 220 ~~~~~~~i~~~~~g~~~~~~~e~------~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l 293 (378)
++++.+.+.+.++++++|+...+ .+..-++||+++|||||||||.+|.|..||+++...++.|+.++|..+..+
T Consensus 347 lLllfL~~GI~iFStlvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiI 426 (477)
T KOG3713|consen 347 LLLLFLAVGIVIFSTLVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITII 426 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhH
Confidence 33444445555666666654322 245669999999999999999999999999999999999999999988777
Q ss_pred HHHHHH
Q 040114 294 TELRIE 299 (378)
Q Consensus 294 ~~~~~~ 299 (378)
.+.+..
T Consensus 427 v~nF~~ 432 (477)
T KOG3713|consen 427 VNNFSM 432 (477)
T ss_pred hhhHHH
Confidence 766554
No 11
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=99.20 E-value=2.1e-11 Score=115.51 Aligned_cols=81 Identities=33% Similarity=0.538 Sum_probs=68.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCccceeeeeeeeeeeeeccccccc--------CccCceeeehhh
Q 040114 104 STPLIVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPD--------TTFTKLFTCVFI 175 (378)
Q Consensus 104 ~~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~--------t~~g~~~~~~~~ 175 (378)
+...++.....+-++.++.|+.+| +..|+|+|+||+|||++|+|||||||.++. .+..+.+..+|+
T Consensus 156 S~~~l~~i~~~~~~~~i~~gaa~f------s~~E~Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fI 229 (350)
T KOG4404|consen 156 SVYNLVLILFTACILLICCGAAMF------SSVEGWSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFI 229 (350)
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHh------hcccCcchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHH
Confidence 344556666667778888899898 777999999999999999999999999986 357788999999
Q ss_pred hhhhhhhhhhhcchh
Q 040114 176 LIGFGFVDILLNGLV 190 (378)
Q Consensus 176 l~Gi~~~~~~~~~~~ 190 (378)
++|+.+++.+++.++
T Consensus 230 L~Gl~vi~a~~Nllv 244 (350)
T KOG4404|consen 230 LLGLCVIYALLNLLV 244 (350)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988887665
No 12
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.08 E-value=8.4e-10 Score=111.09 Aligned_cols=81 Identities=25% Similarity=0.436 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhhhhhhcceeecccc-------------cccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHH
Q 040114 217 IKVCLALGVVIGCLAIGTVTVHFLED-------------MNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVST 283 (378)
Q Consensus 217 ~~~~~~~~~~i~~~~~g~~~~~~~e~-------------~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~ 283 (378)
.++..++.+++.+++.++.+++.+|+ .+|++++||.++|++||||||+.-.|..||+|.+|+++.|+
T Consensus 248 irl~qlvsifisvwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~gl 327 (1103)
T KOG1420|consen 248 IRLVQLVSIFISVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGL 327 (1103)
T ss_pred hhHHHHHHHHHHHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHH
Confidence 44666777888889999999999984 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 040114 284 LAVARAFLYLTELR 297 (378)
Q Consensus 284 ~~va~~~~~l~~~~ 297 (378)
+.+|..+..+.++.
T Consensus 328 amfasyvpeiieli 341 (1103)
T KOG1420|consen 328 AMFASYVPEIIELI 341 (1103)
T ss_pred HHHHhhhHHHHHHH
Confidence 99998888888763
No 13
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.00 E-value=8.9e-11 Score=128.41 Aligned_cols=90 Identities=22% Similarity=0.490 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccccc-CCCCCC---------------CccceeeeeeeeeeeeecccccccCccCcee
Q 040114 107 LIVQQAFIGLVLYILAGIVIYLTNGNF-KGKATF---------------KPVDALYFIVVTLCTIGYGDIVPDTTFTKLF 170 (378)
Q Consensus 107 ~~~~~~~~~l~~~l~~g~~~~~~~~~~-~~~~~~---------------~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~ 170 (378)
.+++++.+++++.+++||++|+..... ....+| .|..|+||+++|||||||||++|.|+.++++
T Consensus 201 ~~~kli~~~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~ 280 (823)
T PLN03192 201 RCARLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIPNFRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIF 280 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHhhhccccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHHH
Confidence 456667777788899999999654321 112233 1566999999999999999999999999999
Q ss_pred eehhhhhhhhhhhhhhcchhhhhhhh
Q 040114 171 TCVFILIGFGFVDILLNGLVTYICDR 196 (378)
Q Consensus 171 ~~~~~l~Gi~~~~~~~~~~~~~l~~~ 196 (378)
+++++++|+.++++.++.+++.+.+.
T Consensus 281 ~i~~ml~g~~~~a~~ig~i~~li~~~ 306 (823)
T PLN03192 281 IIFYMLFNLGLTAYLIGNMTNLVVEG 306 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998877543
No 14
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=98.98 E-value=6e-10 Score=106.93 Aligned_cols=79 Identities=23% Similarity=0.330 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhhhhhhcceeecccc------cccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHH
Q 040114 217 IKVCLALGVVIGCLAIGTVTVHFLED------MNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAF 290 (378)
Q Consensus 217 ~~~~~~~~~~i~~~~~g~~~~~~~e~------~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~ 290 (378)
-.-++++.+++.++++++.+|....+ -+..|||||+++|||||||||.+|.|..||+...++.+.|+..+|..+
T Consensus 360 ElgLLIFFlfIgviLFsSavYFAEade~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPV 439 (507)
T KOG1545|consen 360 ELGLLIFFLFIGVILFSSAVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPV 439 (507)
T ss_pred HHHHHHHHHHHHHHHHhceeeeeecCCCccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccc
Confidence 33455566667777777766654432 367899999999999999999999999999999999999999888877
Q ss_pred HHHHH
Q 040114 291 LYLTE 295 (378)
Q Consensus 291 ~~l~~ 295 (378)
..+.+
T Consensus 440 PVIVs 444 (507)
T KOG1545|consen 440 PVIVS 444 (507)
T ss_pred cEEEe
Confidence 65553
No 15
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.96 E-value=2.1e-10 Score=110.83 Aligned_cols=88 Identities=22% Similarity=0.346 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccCCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhhhhc
Q 040114 108 IVQQAFIGLVLYILAGIVIYLTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLN 187 (378)
Q Consensus 108 ~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~~~ 187 (378)
+-.+++.+.+.++++++++|+.++..+.....+...||||.++||||.||||.+|.|.+||+|..+..+-|+.++++.+.
T Consensus 324 LGFLlFSLtMAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVP 403 (632)
T KOG4390|consen 324 LGFLLFSLTMAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVP 403 (632)
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEecccc
Confidence 34455666678889999999999988888888999999999999999999999999999999999999999999999888
Q ss_pred chhhhhhh
Q 040114 188 GLVTYICD 195 (378)
Q Consensus 188 ~~~~~l~~ 195 (378)
.+++.+.+
T Consensus 404 vIVSNFSR 411 (632)
T KOG4390|consen 404 VIVSNFSR 411 (632)
T ss_pred EEEechhH
Confidence 88776544
No 16
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.95 E-value=3.6e-10 Score=113.20 Aligned_cols=81 Identities=23% Similarity=0.385 Sum_probs=63.8
Q ss_pred HHHHHHHhhhh-hcccccCCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhhhhcchhhhhhh
Q 040114 117 VLYILAGIVIY-LTNGNFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYICD 195 (378)
Q Consensus 117 ~~~l~~g~~~~-~~~~~~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~~~~~~~~l~~ 195 (378)
...++.+++.+ +.++++. ...+++.||+||+++|+||+||||++|.|+.||++++++++.|++++++.++.+...+++
T Consensus 145 ~~l~~~~~~g~~~~~~~f~-~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~i~ 223 (393)
T PRK10537 145 TSLLFYSTFGALYLGDGFS-PPIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPVIR 223 (393)
T ss_pred HHHHHHHHHHHHHHccccC-cCCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555533 3444443 346899999999999999999999999999999999999999999999988888776654
Q ss_pred hHH
Q 040114 196 RQE 198 (378)
Q Consensus 196 ~~~ 198 (378)
.+.
T Consensus 224 ~~l 226 (393)
T PRK10537 224 GNL 226 (393)
T ss_pred HHH
Confidence 433
No 17
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.94 E-value=3.7e-10 Score=113.62 Aligned_cols=118 Identities=25% Similarity=0.406 Sum_probs=92.6
Q ss_pred ccchhhcccCcchhhccccccCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhhhhcccc------cCCCCCCCccce
Q 040114 71 KGKLTRRSHSAPSVFTQFKEAFPDSLDPRPPLKSTPLIVQQAFIGLVLYILAGIVIYLTNGN------FKGKATFKPVDA 144 (378)
Q Consensus 71 ~~~r~~r~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~------~~~~~~~~~~~a 144 (378)
|--|-.|-.+.|++....+-. ..+++.++..++.+.+.+++..+.++.+.|+. +.+....+|+++
T Consensus 222 rflralrlmtvpdilqylnil---------ktsssirl~qlvsifisvwltaag~ihllensgdp~~~f~n~hrltyw~c 292 (1103)
T KOG1420|consen 222 RFLRALRLMTVPDILQYLNIL---------KTSSSIRLVQLVSIFISVWLTAAGFIHLLENSGDPWENFQNNHRLTYWEC 292 (1103)
T ss_pred HHHHHHHhccHHHHHHHHHHH---------hccchhhHHHHHHHHHHHHHhhcceeehhhcCCChhHhccCcccchhhhe
Confidence 344556677888876544321 11345667888888888999998888888753 333444689999
Q ss_pred eeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhhhhcchhhhhhhhH
Q 040114 145 LYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYICDRQ 197 (378)
Q Consensus 145 ~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~~~~~~~~l~~~~ 197 (378)
.||.++||+||||||++..|..||+|.++|++.|+++++..+..+.+.+-.++
T Consensus 293 vyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~ 345 (1103)
T KOG1420|consen 293 VYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRK 345 (1103)
T ss_pred eeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHcccc
Confidence 99999999999999999999999999999999999999999888887765443
No 18
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.80 E-value=5.9e-09 Score=114.18 Aligned_cols=55 Identities=31% Similarity=0.483 Sum_probs=50.5
Q ss_pred cccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040114 245 WVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRIE 299 (378)
Q Consensus 245 ~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~~~~~ 299 (378)
|..|+||+++|+|||||||++|.|..+++|+++++++|++++++.++.++++..+
T Consensus 251 Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~ 305 (823)
T PLN03192 251 YISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 305 (823)
T ss_pred HHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3448999999999999999999999999999999999999999999999987544
No 19
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=98.71 E-value=1.2e-08 Score=101.96 Aligned_cols=59 Identities=25% Similarity=0.450 Sum_probs=54.1
Q ss_pred cccccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040114 241 EDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRIE 299 (378)
Q Consensus 241 e~~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~~~~~ 299 (378)
+.|+|.+|+||+++++||||||+++|.|..||+|+++|.++|+.++..+++.+++...+
T Consensus 112 ~~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~ 170 (433)
T KOG1418|consen 112 QQWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLAD 170 (433)
T ss_pred cceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 35999999999999999999999999999999999999999999998888888876444
No 20
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.57 E-value=4.6e-09 Score=101.73 Aligned_cols=75 Identities=23% Similarity=0.395 Sum_probs=60.9
Q ss_pred HHHHHHHHhhhhhhcceeecccc------cccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 040114 220 CLALGVVIGCLAIGTVTVHFLED------MNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYL 293 (378)
Q Consensus 220 ~~~~~~~i~~~~~g~~~~~~~e~------~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l 293 (378)
.+++.+...++++++++|+...+ -+...||||+++|+||+||||.+|.|..|++|..++-+.|+.++|..+..+
T Consensus 326 FLlFSLtMAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvI 405 (632)
T KOG4390|consen 326 FLLFSLTMAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVI 405 (632)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEE
Confidence 34455566677888888887664 245679999999999999999999999999999999999998887765444
Q ss_pred H
Q 040114 294 T 294 (378)
Q Consensus 294 ~ 294 (378)
.
T Consensus 406 V 406 (632)
T KOG4390|consen 406 V 406 (632)
T ss_pred E
Confidence 3
No 21
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.37 E-value=1.4e-07 Score=100.07 Aligned_cols=90 Identities=24% Similarity=0.334 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccC---CCC-CC------------------------Cccceeeeeeeeeeeeeccc
Q 040114 108 IVQQAFIGLVLYILAGIVIYLTNGNFK---GKA-TF------------------------KPVDALYFIVVTLCTIGYGD 159 (378)
Q Consensus 108 ~~~~~~~~l~~~l~~g~~~~~~~~~~~---~~~-~~------------------------~~~~a~yf~~vtltTvGyGd 159 (378)
...++...+++.++.||++|+...... ..+ +| .|..|+||+++||||+|||+
T Consensus 234 ~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~~~~~~~~~~~fg~~s~~~kY~~aLyw~l~tLstvG~g~ 313 (727)
T KOG0498|consen 234 AALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGRLLSCYNLSFTFGIYSLALKYVYALYWGLSTLSTVGYGL 313 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccccccccccccCcccccccchhHHHHHHHHHHHHhhHhhhccCCc
Confidence 446667777888999999995432111 111 11 25679999999999999999
Q ss_pred ccccCccCceeeehhhhhhhhhhhhhhcchhhhhhhhH
Q 040114 160 IVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYICDRQ 197 (378)
Q Consensus 160 i~P~t~~g~~~~~~~~l~Gi~~~~~~~~~~~~~l~~~~ 197 (378)
..|.++..++|+++++++|+.+++++|+++..++....
T Consensus 314 ~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~t 351 (727)
T KOG0498|consen 314 VHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLT 351 (727)
T ss_pred cCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHh
Confidence 99999999999999999999999999999999887543
No 22
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.36 E-value=3.3e-07 Score=97.33 Aligned_cols=97 Identities=21% Similarity=0.385 Sum_probs=70.1
Q ss_pred cccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhccCC
Q 040114 245 WVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRIE---------KRNRRIAKWVLQKKMT 315 (378)
Q Consensus 245 ~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~~~~~---------~~~r~~~~~il~~~~~ 315 (378)
|.-|+||++.|+||+||||.+|.+..-++|++++|++|.+++|+++++++.+... .+.|..+.|+-.+++.
T Consensus 295 Y~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP 374 (727)
T KOG0498|consen 295 YVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLP 374 (727)
T ss_pred HHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCC
Confidence 4458999999999999999999999999999999999999999999999876433 1234555666544432
Q ss_pred cCCeeeeecCCCCCcccchHHHHHHHHhCCCCHHHH
Q 040114 316 LGDLVAADLDNDGSISKSEFVIYKLKEMGKIAEKDI 351 (378)
Q Consensus 316 ~~~l~~~d~d~d~~v~~~e~~~~~L~~~g~is~edi 351 (378)
.. + .-...++..+++...+-+++|++
T Consensus 375 ~~------L----RqRi~~y~q~kw~~t~Gvdee~l 400 (727)
T KOG0498|consen 375 PD------L----RQRIRRYEQYKWLATRGVDEEEL 400 (727)
T ss_pred HH------H----HHHHHHHHHHHHhhccCcCHHHH
Confidence 21 0 11134455566666656666665
No 23
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=98.15 E-value=1e-05 Score=81.75 Aligned_cols=85 Identities=20% Similarity=0.355 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhhhhhhcceeeccc-----ccccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHH
Q 040114 217 IKVCLALGVVIGCLAIGTVTVHFLE-----DMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFL 291 (378)
Q Consensus 217 ~~~~~~~~~~i~~~~~g~~~~~~~e-----~~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~ 291 (378)
+.+.+++..+..+++.|.+.+.+++ ..+++.++||+++|++||||||.+|.-++..+..++.|.+.++++..-+.
T Consensus 185 ~ql~ll~s~l~clift~~c~i~h~qra~~k~i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~~ 264 (1087)
T KOG3193|consen 185 RQLLLLFSVLACLIFTGMCSIEHLQRARGKRIDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQLD 264 (1087)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHccCceeeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHHH
Confidence 3344445545555566666666654 36889999999999999999999999999999999998888888877777
Q ss_pred HHHHHHHHHH
Q 040114 292 YLTELRIEKR 301 (378)
Q Consensus 292 ~l~~~~~~~~ 301 (378)
.++..+.|++
T Consensus 265 ~l~~tw~erq 274 (1087)
T KOG3193|consen 265 ELGQTWSERQ 274 (1087)
T ss_pred HHHHHHHHHh
Confidence 7776666654
No 24
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=98.02 E-value=4.3e-06 Score=84.42 Aligned_cols=64 Identities=28% Similarity=0.517 Sum_probs=48.8
Q ss_pred CCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhhhhcchhhhhhhhH
Q 040114 134 KGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYICDRQ 197 (378)
Q Consensus 134 ~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~~~~~~~~l~~~~ 197 (378)
.+....+.+.++||.++|++||||||.+|.-++.++..++.+.+.+.++..-+..++....++|
T Consensus 211 a~~k~i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~~~l~~tw~erq 274 (1087)
T KOG3193|consen 211 ARGKRIDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQLDELGQTWSERQ 274 (1087)
T ss_pred ccCceeeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 3445678999999999999999999999999999988777766666665555555554444443
No 25
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.90 E-value=6.2e-06 Score=82.04 Aligned_cols=59 Identities=25% Similarity=0.490 Sum_probs=53.0
Q ss_pred CCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhhhhcchhhhhh
Q 040114 136 KATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYIC 194 (378)
Q Consensus 136 ~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~~~~~~~~l~ 194 (378)
....+|.++.|+..+|+.+|||||++|.|..||.+|++-.++|.++.+++++.+..-+.
T Consensus 283 ~~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKLe 341 (489)
T KOG3684|consen 283 DVTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKLE 341 (489)
T ss_pred hhHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 36677999999999999999999999999999999999999999999998888776543
No 26
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.86 E-value=5e-06 Score=82.68 Aligned_cols=69 Identities=20% Similarity=0.308 Sum_probs=56.8
Q ss_pred hhhhhhcceeecccc--------cccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040114 228 GCLAIGTVTVHFLED--------MNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTEL 296 (378)
Q Consensus 228 ~~~~~g~~~~~~~e~--------~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~~ 296 (378)
.++++.++++...|. -.|.++.|+..+|+-+|||||++|.|..||..+++.-++|.++.+..++.++..
T Consensus 263 ~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRK 339 (489)
T KOG3684|consen 263 SLWIIASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARK 339 (489)
T ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHH
Confidence 344555555555552 358999999999999999999999999999999999999999988888877744
No 27
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.61 E-value=6.3e-06 Score=81.04 Aligned_cols=92 Identities=18% Similarity=0.294 Sum_probs=61.6
Q ss_pred ChHHH-HHHHHHHHHHHHHHHhhhhhcc---cccCC------C-----CCCCccceeeeeeeeeeeeeccc--ccccCcc
Q 040114 104 STPLI-VQQAFIGLVLYILAGIVIYLTN---GNFKG------K-----ATFKPVDALYFIVVTLCTIGYGD--IVPDTTF 166 (378)
Q Consensus 104 ~~~~~-~~~~~~~l~~~l~~g~~~~~~~---~~~~~------~-----~~~~~~~a~yf~~vtltTvGyGd--i~P~t~~ 166 (378)
+|+.. +..+...++.++++|.++|+.. .+... . ..-+|.+||+|++.|+||||||. +.|..+.
T Consensus 33 ~W~~~l~~f~~~y~~~~~~Fa~~y~~i~~~~gdl~~~~~~~~~~~Cv~~~~~f~~aF~FSveT~tTIGYG~~~~~~~c~~ 112 (336)
T PF01007_consen 33 SWRWFLLLFVLSYLLSWLFFALLYYLIAYSHGDLEPIHADSNWTPCVSNVNSFTSAFLFSVETQTTIGYGSRYPTPECPY 112 (336)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSBTTS-TSECT-TTHHHHHHHHHHHHTT---SSSEB-CSHHH
T ss_pred CeeeeeehhHHHHHHHHHHHHHHHHHHhhhcccchhcccccCCCCceecccchhhheeEEEEEEEEeccCCcccCCCcch
Confidence 46553 3344455667788887777421 11111 1 11479999999999999999998 5688889
Q ss_pred Cceeeehhhhhhhhhhhhhhcchhhhhhh
Q 040114 167 TKLFTCVFILIGFGFVDILLNGLVTYICD 195 (378)
Q Consensus 167 g~~~~~~~~l~Gi~~~~~~~~~~~~~l~~ 195 (378)
+-++.++-+++|+.+.+++++.+...+.+
T Consensus 113 a~~l~~~q~~~g~l~~a~~~Glvfar~sr 141 (336)
T PF01007_consen 113 AIFLVTIQSLVGLLLDAFMTGLVFARFSR 141 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999988887776655543
No 28
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=97.38 E-value=0.00012 Score=74.85 Aligned_cols=54 Identities=28% Similarity=0.582 Sum_probs=49.3
Q ss_pred ccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhhhhcchhhhhh
Q 040114 141 PVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDILLNGLVTYIC 194 (378)
Q Consensus 141 ~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~~~~~~~~l~ 194 (378)
|..++||.++.|||||||++.|.|...|+|.+..+++|-.+.+..++.+...+.
T Consensus 424 YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~Q 477 (971)
T KOG0501|consen 424 YISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQ 477 (971)
T ss_pred ehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 788999999999999999999999999999999999999998888887765554
No 29
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=97.26 E-value=0.00022 Score=72.95 Aligned_cols=53 Identities=28% Similarity=0.519 Sum_probs=48.3
Q ss_pred cccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040114 245 WVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELR 297 (378)
Q Consensus 245 ~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~~~ 297 (378)
|+.|+||++.++||||||.+.|.|...++|++..|++|..+.|..++.++...
T Consensus 424 YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~ 476 (971)
T KOG0501|consen 424 YISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTII 476 (971)
T ss_pred ehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 67799999999999999999999999999999999999999888888777553
No 30
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.04 E-value=0.00013 Score=71.81 Aligned_cols=52 Identities=25% Similarity=0.212 Sum_probs=38.7
Q ss_pred cccccceeEEEEEEeccccCC--cccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 040114 243 MNWVDSFYLSVTSVTTVGYGD--YAFTTLTGRCFAIIWLLVSTLAVARAFLYLT 294 (378)
Q Consensus 243 ~~~~da~Y~~~~T~tTVGyGD--~~p~t~~gr~f~~~~il~g~~~va~~~~~l~ 294 (378)
.+|.+||+|++-|.||||||. +.|..+.+-++.++=.++|+.+.+.+++.+-
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvf 136 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVF 136 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999 4566677778888888888888777765443
No 31
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.52 E-value=0.0024 Score=64.53 Aligned_cols=90 Identities=20% Similarity=0.257 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccccC-CCCCCCc--------------------cceeeeeeeeeeeeecccccccC
Q 040114 106 PLIVQQAFIGLVLYILAGIVIYLTNGNFK-GKATFKP--------------------VDALYFIVVTLCTIGYGDIVPDT 164 (378)
Q Consensus 106 ~~~~~~~~~~l~~~l~~g~~~~~~~~~~~-~~~~~~~--------------------~~a~yf~~vtltTvGyGdi~P~t 164 (378)
-++..++..++++++-.||+.|+...... +...|.| .-++||+.-|+||+| -.-.|.|
T Consensus 128 fri~~lv~~~~ilfHWNaClYf~iS~~~g~~~d~wvY~~i~d~~~~~c~~~n~~ReY~~S~YWStLTlTTiG-e~P~P~t 206 (536)
T KOG0500|consen 128 FRISKLVHYCLILFHWNACLYFLISKAIGFTTDDWVYPKINDPEFATCDAGNLTREYLYSLYWSTLTLTTIG-EQPPPVT 206 (536)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhhHhcCccccccccCCccCccccccchhHHHHHHHHHHHHHhhhhhhcc-CCCCCCc
Confidence 34567777888888889998886553221 1223654 358999999999997 4567889
Q ss_pred ccCceeeehhhhhhhhhhhhhhcchhhhhhhh
Q 040114 165 TFTKLFTCVFILIGFGFVDILLNGLVTYICDR 196 (378)
Q Consensus 165 ~~g~~~~~~~~l~Gi~~~~~~~~~~~~~l~~~ 196 (378)
..-..|.++-.++|+.+|+..++++++.+...
T Consensus 207 ~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnm 238 (536)
T KOG0500|consen 207 SSEYAFVIVDTLIGVLIFATIVGNVGSMVTNM 238 (536)
T ss_pred CchhhHHHHHHHHHHHHHhhhhccHhHHHHhh
Confidence 99999999999999999999999998877543
No 32
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=96.18 E-value=0.007 Score=59.55 Aligned_cols=90 Identities=14% Similarity=0.257 Sum_probs=59.2
Q ss_pred ChH-HHHHHHHHHHHHHHHHHhhhhhcc---cccCC---CCC--------CCccceeeeeeeeeeeeeccccccc--Ccc
Q 040114 104 STP-LIVQQAFIGLVLYILAGIVIYLTN---GNFKG---KAT--------FKPVDALYFIVVTLCTIGYGDIVPD--TTF 166 (378)
Q Consensus 104 ~~~-~~~~~~~~~l~~~l~~g~~~~~~~---~~~~~---~~~--------~~~~~a~yf~~vtltTvGyGdi~P~--t~~ 166 (378)
+|| .++......++-|+++|+++|+.. +.... .++ .++..||-|++-|=||||||--++. =|.
T Consensus 61 kWR~~lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tpCV~nV~sf~sAFLFSiETQtTIGYG~R~vTeeCP~ 140 (400)
T KOG3827|consen 61 KWRWMLLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDPPGENHTPCVMNVHSFTSAFLFSIETQTTIGYGFRYVTEECPE 140 (400)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCCCCcCCCcceeeccchhhhheeeeeeeeeeeccccccCccChH
Confidence 344 445555566677999999999543 11111 122 2688999999999999999987765 345
Q ss_pred Cceeeehhhhhhhhhhhhhhcchhhhh
Q 040114 167 TKLFTCVFILIGFGFVDILLNGLVTYI 193 (378)
Q Consensus 167 g~~~~~~~~l~Gi~~~~~~~~~~~~~l 193 (378)
+-+..++-.++|+.+=+.+++.+..-+
T Consensus 141 aI~ll~~Q~I~g~ii~afm~G~i~aKi 167 (400)
T KOG3827|consen 141 AIFLLVLQSILGVIINAFMVGAIFAKI 167 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666677777766666555544333
No 33
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=94.86 E-value=0.012 Score=43.16 Aligned_cols=55 Identities=29% Similarity=0.495 Sum_probs=40.2
Q ss_pred eeecCCCCCcccchHHHHHHHHhCC-CCHHHHHHHHhh-hcccCCCCCcccccccccc
Q 040114 321 AADLDNDGSISKSEFVIYKLKEMGK-IAEKDILQICNQ-FDLIDDSKCGKITVADLMY 376 (378)
Q Consensus 321 ~~d~d~d~~v~~~e~~~~~L~~~g~-is~edi~~i~~~-f~~ld~~~~G~l~~~d~~~ 376 (378)
..|.+++|.++..|+... +...+. .+++++.+..++ |+..|.|++|.|+.+|..+
T Consensus 8 ~~D~d~~G~i~~~el~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~ 64 (66)
T PF13499_consen 8 KFDKDGDGYISKEELRRA-LKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLN 64 (66)
T ss_dssp HHSTTSSSEEEHHHHHHH-HHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHH
T ss_pred HHcCCccCCCCHHHHHHH-HHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhc
Confidence 458899999999987764 445443 336666544444 9999999999999988653
No 34
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=94.82 E-value=0.0056 Score=53.99 Aligned_cols=49 Identities=22% Similarity=0.535 Sum_probs=37.4
Q ss_pred CCccceeeeeeeeeeeeeccccccc-----CccCceeeehhhh-hhhhhhhhhhc
Q 040114 139 FKPVDALYFIVVTLCTIGYGDIVPD-----TTFTKLFTCVFIL-IGFGFVDILLN 187 (378)
Q Consensus 139 ~~~~~a~yf~~vtltTvGyGdi~P~-----t~~g~~~~~~~~l-~Gi~~~~~~~~ 187 (378)
-++..++|+.+.++||.|+||..|. +..+.++.+.+.+ .++.++.++++
T Consensus 144 ~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nllia 198 (200)
T PF00520_consen 144 DSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIA 198 (200)
T ss_dssp SSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHh
Confidence 4689999999999999999999998 7777777744444 44455555544
No 35
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=93.61 E-value=0.04 Score=47.80 Aligned_cols=55 Identities=25% Similarity=0.340 Sum_probs=42.4
Q ss_pred eeecCCCCCcccchHHHHHHHHhCCCCHH--HHHHHHhhhcccCCCCCccccccccc
Q 040114 321 AADLDNDGSISKSEFVIYKLKEMGKIAEK--DILQICNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~e--di~~i~~~f~~ld~~~~G~l~~~d~~ 375 (378)
.+|.+++|.++..||+.-+-......+.+ ...++.+.|+..|.|++|.|+.+||.
T Consensus 52 ~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~ 108 (151)
T KOG0027|consen 52 EIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELK 108 (151)
T ss_pred HhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHH
Confidence 46777899999999986544444333333 46788999999999999999999885
No 36
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=93.46 E-value=0.23 Score=49.16 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=35.3
Q ss_pred ccccceeEEEEEEeccccCCcccCCc--chhHHHHHHHHHHHHHHHHHHH
Q 040114 244 NWVDSFYLSVTSVTTVGYGDYAFTTL--TGRCFAIIWLLVSTLAVARAFL 291 (378)
Q Consensus 244 ~~~da~Y~~~~T~tTVGyGD~~p~t~--~gr~f~~~~il~g~~~va~~~~ 291 (378)
+|..||-|++-|=||||||--.++.. .+-+..++-.+.|+.+=+.+++
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G 161 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVG 161 (400)
T ss_pred chhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 57779999999999999999988764 3555555666777665554444
No 37
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=93.30 E-value=0.009 Score=60.16 Aligned_cols=142 Identities=15% Similarity=0.142 Sum_probs=70.3
Q ss_pred Cccceeeeeeeeeeeeecc--cccccCccCceeeehhhhhhhhhhhhhhc-chhhhh--hhhHHHHHhhhhhhh-----h
Q 040114 140 KPVDALYFIVVTLCTIGYG--DIVPDTTFTKLFTCVFILIGFGFVDILLN-GLVTYI--CDRQEAVFLSTMDEN-----R 209 (378)
Q Consensus 140 ~~~~a~yf~~vtltTvGyG--di~P~t~~g~~~~~~~~l~Gi~~~~~~~~-~~~~~l--~~~~~~~l~r~~~~~-----~ 209 (378)
...++.++..++++|.||. |..--++..+++.++.+++|-.--+..=+ ++.+.. .+.-...+.+..+.. +
T Consensus 231 ~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg~~gSTaGGiK~~r~~vl~~~~~~~~~~~~~~~~v~~~~ 310 (390)
T TIGR00933 231 ALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGGCSGSTAGGIKTTTFAILLKQVYREIRRGIHPRIIFSRR 310 (390)
T ss_pred HHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcCCCcccCCchHHHHHHHHHHHHHHHHHccCCCceEEeEE
Confidence 4688899999999999995 54444566777777777766332111000 011111 111111111111110 0
Q ss_pred hhhhhHHHHHH----HHHHHHHhhhhhhcceeecccccccccceeEEEEEEeccccCCcc--c-CCcchhHHHHHHHHHH
Q 040114 210 ERRMRIRIKVC----LALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYA--F-TTLTGRCFAIIWLLVS 282 (378)
Q Consensus 210 ~~~~~~~~~~~----~~~~~~i~~~~~g~~~~~~~e~~~~~da~Y~~~~T~tTVGyGD~~--p-~t~~gr~f~~~~il~g 282 (378)
-....++.... ..+.+.+..+.+++... ...+.++.|+++=++.+++|||.+=-. | -+..+|+..++.|++|
T Consensus 311 i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~fe~~Sa~~tvGls~g~~~~~l~~~~k~il~~~M~~G 389 (390)
T TIGR00933 311 IGGKTIDKAILISVWSFFLVFALIFLLSILEL-ISSGYDFLTSLFEVVSAFGTVGLSVGLTTANLPDAGKLILIVLMFIG 389 (390)
T ss_pred ECCeehHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCHHHHHHHHHHHhcCcCCCCCCCcccCCHHHHHHHHHHHHcC
Confidence 01111111111 11111111122222111 123678899999888999999765432 3 3567899888888765
No 38
>PRK10750 potassium transporter; Provisional
Probab=93.29 E-value=0.042 Score=56.90 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=26.8
Q ss_pred ccccceeEEEEEEeccccCCcccC--CcchhHHHHHHHHHH
Q 040114 244 NWVDSFYLSVTSVTTVGYGDYAFT--TLTGRCFAIIWLLVS 282 (378)
Q Consensus 244 ~~~da~Y~~~~T~tTVGyGD~~p~--t~~gr~f~~~~il~g 282 (378)
.+.++++.++..+||-||.-.... .+..+.+.++.+++|
T Consensus 304 ~l~~s~Fq~vS~~tTtGF~t~d~~~w~~~~~~ll~~lMfIG 344 (483)
T PRK10750 304 TLNQAFFQVVSMATTAGFTTDSIARWPLFLPVLLLCSAFIG 344 (483)
T ss_pred HHHHHHHeeeecccCCCCCCCChhhccHHHHHHHHHHHHHc
Confidence 456677777777899999865433 234567777777776
No 39
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=92.86 E-value=0.029 Score=33.53 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=18.2
Q ss_pred HhhhcccCCCCCccccccccc
Q 040114 355 CNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 355 ~~~f~~ld~~~~G~l~~~d~~ 375 (378)
.+.|+++|.|++|.|+.+|+.
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~ 22 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQ 22 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHH
Confidence 457999999999999998864
No 40
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.62 E-value=0.16 Score=51.73 Aligned_cols=50 Identities=24% Similarity=0.248 Sum_probs=43.0
Q ss_pred ceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040114 248 SFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRI 298 (378)
Q Consensus 248 a~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~~~~ 298 (378)
|+||+..|+||+|- -..|.+..--+|.++=.++|+.++|..++.++++..
T Consensus 187 S~YWStLTlTTiGe-~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVt 236 (536)
T KOG0500|consen 187 SLYWSTLTLTTIGE-QPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVT 236 (536)
T ss_pred HHHHHhhhhhhccC-CCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHH
Confidence 89999999999982 346788888999999999999999999988887644
No 41
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.31 E-value=0.041 Score=57.00 Aligned_cols=86 Identities=23% Similarity=0.315 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccc-ccCCC-------CCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhh
Q 040114 108 IVQQAFIGLVLYILAGIVIYLTNG-NFKGK-------ATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGF 179 (378)
Q Consensus 108 ~~~~~~~~l~~~l~~g~~~~~~~~-~~~~~-------~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi 179 (378)
.++...-++..+++-+|+.|.... +--+. ++..|.-++||++-|++||| |.-.|++-..-+|..+-.+.|+
T Consensus 363 V~rT~~YmlyilHinacvYY~~SayqglG~~rWVydg~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGV 441 (815)
T KOG0499|consen 363 VIRTTGYLLYILHINACVYYWASAYQGLGTTRWVYDGEGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGV 441 (815)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHhhcccccceeEEcCCCCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHH
Confidence 344445556667777777663321 11122 33478999999999999999 8888988888888777778899
Q ss_pred hhhhhhhcchhhhhh
Q 040114 180 GFVDILLNGLVTYIC 194 (378)
Q Consensus 180 ~~~~~~~~~~~~~l~ 194 (378)
.+|+++++.+-+.+-
T Consensus 442 FvFslliGQmRDvi~ 456 (815)
T KOG0499|consen 442 FVFSLLIGQMRDVIG 456 (815)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999988766553
No 42
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.29 E-value=0.12 Score=53.83 Aligned_cols=55 Identities=16% Similarity=0.332 Sum_probs=46.2
Q ss_pred cccccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040114 241 EDMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTEL 296 (378)
Q Consensus 241 e~~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~~ 296 (378)
+|..|+-++||++-|++|+| |-..|.+....+|..+=-+.|+.+|+.+++.+-+.
T Consensus 400 ~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDv 454 (815)
T KOG0499|consen 400 EGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDV 454 (815)
T ss_pred CCCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999 77788888778887777788999999988877654
No 43
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=91.24 E-value=0.065 Score=33.23 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.1
Q ss_pred HHhhhcccCCCCCccccccccc
Q 040114 354 ICNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 354 i~~~f~~ld~~~~G~l~~~d~~ 375 (378)
+.+-|+..|.|++|.|+.+|+.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~ 23 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFK 23 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHH
Confidence 4567999999999999998875
No 44
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=90.12 E-value=0.048 Score=46.40 Aligned_cols=87 Identities=13% Similarity=0.237 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhhhhhcccc----cCC-------CCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhh
Q 040114 111 QAFIGLVLYILAGIVIYLTNGN----FKG-------KATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGF 179 (378)
Q Consensus 111 ~~~~~l~~~l~~g~~~~~~~~~----~~~-------~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi 179 (378)
+++.+++.+++.++++|+.+.- ... ....++.+++|+++.+++. +-++..|.+..+|++.++|.++.+
T Consensus 4 vW~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~l 82 (148)
T PF00060_consen 4 VWLLILLSILLVSLVLWLFERFSPYEWRKNQSSPPRRWRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSL 82 (148)
T ss_dssp HHHHHHHHHHHHHTTGGGT------------------HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccCcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHH
Confidence 3455555666666666644321 111 1123577899998888776 667899999999999999999999
Q ss_pred hhhhhhhcchhhhhhhhHH
Q 040114 180 GFVDILLNGLVTYICDRQE 198 (378)
Q Consensus 180 ~~~~~~~~~~~~~l~~~~~ 198 (378)
.+.+...+.++.++...+.
T Consensus 83 il~~~Yta~L~s~Lt~~~~ 101 (148)
T PF00060_consen 83 ILIASYTANLTSFLTVPKY 101 (148)
T ss_dssp HHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhcccCc
Confidence 9999888888887765443
No 45
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=90.02 E-value=0.21 Score=43.76 Aligned_cols=48 Identities=19% Similarity=0.355 Sum_probs=36.0
Q ss_pred ccccceeEEEEEEeccccCCcccC-----CcchhHHHHHHHHHHH-HHHHHHHH
Q 040114 244 NWVDSFYLSVTSVTTVGYGDYAFT-----TLTGRCFAIIWLLVST-LAVARAFL 291 (378)
Q Consensus 244 ~~~da~Y~~~~T~tTVGyGD~~p~-----t~~gr~f~~~~il~g~-~~va~~~~ 291 (378)
++..|+|+.+.++||.|+||..|. +..+.++.+.+++++. .+++..++
T Consensus 145 ~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nllia 198 (200)
T PF00520_consen 145 SFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIA 198 (200)
T ss_dssp SHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHh
Confidence 577899999999999999999997 6777888755555444 44444443
No 46
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=89.24 E-value=0.11 Score=32.32 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=18.4
Q ss_pred HHhhhcccCCCCCccccccccc
Q 040114 354 ICNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 354 i~~~f~~ld~~~~G~l~~~d~~ 375 (378)
+.+-|+..|.|++|.|+.+|+.
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~ 23 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELR 23 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHH
Confidence 4677999999999999999975
No 47
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=86.81 E-value=0.35 Score=33.90 Aligned_cols=45 Identities=27% Similarity=0.543 Sum_probs=33.2
Q ss_pred CCCcccchHHHHHHHHhC-C-CCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114 327 DGSISKSEFVIYKLKEMG-K-IAEKDILQICNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 327 d~~v~~~e~~~~~L~~~g-~-is~edi~~i~~~f~~ld~~~~G~l~~~d~~ 375 (378)
+|.++.+|+.... ..+| + .+++++..+ |...|.|++|.|+.+|..
T Consensus 2 ~G~i~~~~~~~~l-~~~g~~~~s~~e~~~l---~~~~D~~~~G~I~~~EF~ 48 (54)
T PF13833_consen 2 DGKITREEFRRAL-SKLGIKDLSEEEVDRL---FREFDTDGDGYISFDEFI 48 (54)
T ss_dssp SSEEEHHHHHHHH-HHTTSSSSCHHHHHHH---HHHHTTSSSSSEEHHHHH
T ss_pred cCEECHHHHHHHH-HHhCCCCCCHHHHHHH---HHhcccCCCCCCCHHHHH
Confidence 5778888877654 5544 4 788886554 667789999999998865
No 48
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=86.58 E-value=0.37 Score=38.32 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=26.5
Q ss_pred CCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114 346 IAEKDILQICNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 346 is~edi~~i~~~f~~ld~~~~G~l~~~d~~ 375 (378)
++++++..+.+.|+.+|.|++|.|+.+||.
T Consensus 4 ls~~~~~~l~~~F~~~D~d~~G~Is~~el~ 33 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKNQDGTVTGAQAK 33 (96)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEeHHHHH
Confidence 578889999999999999999999998874
No 49
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=86.24 E-value=0.72 Score=33.32 Aligned_cols=50 Identities=34% Similarity=0.405 Sum_probs=36.3
Q ss_pred eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114 321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~ 375 (378)
..|.+++|.++..|+.. .+...|. +++++..+ |+..|.|++|.++.+|..
T Consensus 7 ~~D~~~~G~i~~~el~~-~l~~~g~-~~~~~~~i---~~~~d~~~~g~i~~~ef~ 56 (67)
T cd00052 7 SLDPDGDGLISGDEARP-FLGKSGL-PRSVLAQI---WDLADTDKDGKLDKEEFA 56 (67)
T ss_pred HhCCCCCCcCcHHHHHH-HHHHcCC-CHHHHHHH---HHHhcCCCCCcCCHHHHH
Confidence 35678889999888664 3445564 77777666 556678999999988764
No 50
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=85.65 E-value=0.25 Score=49.82 Aligned_cols=148 Identities=11% Similarity=0.143 Sum_probs=70.0
Q ss_pred CCCccceeeeeeeeeeeeecccccc---cCccCceeeehh-hhhhhhhhhhhhcchhhhhh--hhHHHHHhhh-hh--hh
Q 040114 138 TFKPVDALYFIVVTLCTIGYGDIVP---DTTFTKLFTCVF-ILIGFGFVDILLNGLVTYIC--DRQEAVFLST-MD--EN 208 (378)
Q Consensus 138 ~~~~~~a~yf~~vtltTvGyGdi~P---~t~~g~~~~~~~-~l~Gi~~~~~~~~~~~~~l~--~~~~~~l~r~-~~--~~ 208 (378)
..++.||++-++..+||.|.-=+.+ .++.++++-.+. .+.|+.++.+....+...-. ....+.+... .. +.
T Consensus 13 ~~s~~dA~FeavSa~ttTGltv~~~~~~~~~~~~~~r~~l~~iGGlG~~v~~~~~l~~~g~~~~~~~~l~~~e~~~~~~~ 92 (390)
T TIGR00933 13 PLSFIDALFTATSAVTTTGLTVLDTLESLPKAGLFLRSLLQQIGGLGFMVLAVAILILLGKKISLGARLYLAEALGPLSD 92 (390)
T ss_pred CCCHHHHHHhhHhhcccCCCeEccChhhcCHhHHHHHHHHHHHcChHHHHHHHHHHHHHccccCHHHHHHHHHhCCCCCc
Confidence 3578999999999999999633222 234444443333 33455544443322211000 0111111111 11 00
Q ss_pred hhhhhhHHHHHHHHHHHHHhhhhhhcceeecccccccccceeEEEEEEeccccCCcccC------CcchhHHHHHHHHHH
Q 040114 209 RERRMRIRIKVCLALGVVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAFT------TLTGRCFAIIWLLVS 282 (378)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~e~~~~~da~Y~~~~T~tTVGyGD~~p~------t~~gr~f~~~~il~g 282 (378)
.+-..+.+......+.+.++..++++..++..+..+++||++.++.+++|-||.-.... ++...+..++++++|
T Consensus 93 ~~~~~~i~~~~~~~~~iy~~lt~l~~~~~~~~g~~~~~~Aif~avSa~~taGFs~~~~~~~~~~~~~~i~~v~~~lm~iG 172 (390)
T TIGR00933 93 DKLLPLIKNTAKFIFVIYLLGTILLAVRFVLTGWMPLFDAIFHSISAFNNGGFSTHSDSSIGYFHDPSVNLVIAFLIILG 172 (390)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcCCcCCCCCcchhhccChHHHHHHHHHHHHH
Confidence 11111222222222222222233333333332227899999999999999998765431 112345555666655
Q ss_pred HHH
Q 040114 283 TLA 285 (378)
Q Consensus 283 ~~~ 285 (378)
-.-
T Consensus 173 g~g 175 (390)
T TIGR00933 173 GLG 175 (390)
T ss_pred hcC
Confidence 433
No 51
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=83.52 E-value=0.9 Score=35.78 Aligned_cols=46 Identities=17% Similarity=0.359 Sum_probs=33.5
Q ss_pred CCCcccchHHHHHH--HHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114 327 DGSISKSEFVIYKL--KEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 327 d~~v~~~e~~~~~L--~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~ 375 (378)
+|.++..|+....- ..+| +.+++++.++ |+++|.|++|.++.+|.+
T Consensus 26 ~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m---~~~~D~d~dG~Idf~EFv 74 (88)
T cd05029 26 KNTLSKKELKELIQKELTIGSKLQDAEIAKL---MEDLDRNKDQEVNFQEYV 74 (88)
T ss_pred CCEECHHHHHHHHHHHHhcCCCCCHHHHHHH---HHHhcCCCCCCCcHHHHH
Confidence 67888888764321 1244 4689988887 556799999999988864
No 52
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=83.29 E-value=0.27 Score=51.36 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=33.6
Q ss_pred cccccceeEEEEEEeccc--cCCcccCCcchhHHHHHHHHHHH
Q 040114 243 MNWVDSFYLSVTSVTTVG--YGDYAFTTLTGRCFAIIWLLVST 283 (378)
Q Consensus 243 ~~~~da~Y~~~~T~tTVG--yGD~~p~t~~gr~f~~~~il~g~ 283 (378)
..+.+.+|=.+....|+| +|.+.+.|..+++..++.|++|=
T Consensus 450 hgfseiLyE~~SA~~tnGss~gGLt~~t~~~niil~~~M~iGR 492 (559)
T PRK05482 450 HGFSEVLYAYTSAAANNGSAFAGLGANTPFWNLTLGIAMLLGR 492 (559)
T ss_pred CCHHHHHHHHHhhccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence 578888998888888886 44578889999999999998873
No 53
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=82.39 E-value=1.1 Score=40.81 Aligned_cols=58 Identities=28% Similarity=0.383 Sum_probs=40.9
Q ss_pred eeeeecCCCCCcccchHH---HHHHHHhCC----CCHH-HHHHHHhhhcccCCCCCcccccccccc
Q 040114 319 LVAADLDNDGSISKSEFV---IYKLKEMGK----IAEK-DILQICNQFDLIDDSKCGKITVADLMY 376 (378)
Q Consensus 319 l~~~d~d~d~~v~~~e~~---~~~L~~~g~----is~e-di~~i~~~f~~ld~~~~G~l~~~d~~~ 376 (378)
....|.|+||.+++.|.+ ...+..+|. -.++ --.....-|.+.|.|++|.||.+|...
T Consensus 106 F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~ 171 (193)
T KOG0044|consen 106 FRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIE 171 (193)
T ss_pred heeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHH
Confidence 567899999999999953 333445554 1111 123455679999999999999998653
No 54
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=82.31 E-value=1.2 Score=35.24 Aligned_cols=47 Identities=15% Similarity=0.292 Sum_probs=34.3
Q ss_pred CCCCCcccchHHHHHHHH-hCC-CCH-HHHHHHHhhhcccCCCCCccccccccc
Q 040114 325 DNDGSISKSEFVIYKLKE-MGK-IAE-KDILQICNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 325 d~d~~v~~~e~~~~~L~~-~g~-is~-edi~~i~~~f~~ld~~~~G~l~~~d~~ 375 (378)
+++|.++..|+.. .+.. +|. +++ +++..+ ++++|.|++|.++.+|.+
T Consensus 21 ~~~g~i~~~ELk~-ll~~elg~~ls~~~~v~~m---i~~~D~d~DG~I~F~EF~ 70 (89)
T cd05022 21 GGKESLTASEFQE-LLTQQLPHLLKDVEGLEEK---MKNLDVNQDSKLSFEEFW 70 (89)
T ss_pred CCCCeECHHHHHH-HHHHHhhhhccCHHHHHHH---HHHhCCCCCCCCcHHHHH
Confidence 6788899888764 3344 664 566 666555 577899999999988753
No 55
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=81.63 E-value=0.48 Score=34.48 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.4
Q ss_pred HHHhhhcccCCCCCccccccccc
Q 040114 353 QICNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 353 ~i~~~f~~ld~~~~G~l~~~d~~ 375 (378)
++.+.|+.+|.|++|.|+.+||.
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~ 23 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELR 23 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHH
Confidence 35788999999999999999885
No 56
>PRK10750 potassium transporter; Provisional
Probab=81.53 E-value=0.25 Score=51.18 Aligned_cols=56 Identities=11% Similarity=0.154 Sum_probs=36.4
Q ss_pred HHhhhhhhcceeecccccccccceeEEEEEEecccc--CCc----ccCCcchhHHHHHHHHHH
Q 040114 226 VIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGY--GDY----AFTTLTGRCFAIIWLLVS 282 (378)
Q Consensus 226 ~i~~~~~g~~~~~~~e~~~~~da~Y~~~~T~tTVGy--GD~----~p~t~~gr~f~~~~il~g 282 (378)
.++++.+++.+. ..++.+..+|+--+..+++++|. |.. ..-+..+|++.++.|++|
T Consensus 404 y~~~~~~~~~~l-~~~g~~~~sA~~~v~s~l~nvG~s~G~~~~~f~~l~~~~K~il~~~MllG 465 (483)
T PRK10750 404 YALVFIVSMLAI-IATGVDDFSAFASVVATLNNLGPGLGVVADNFTSMNPVAKWILIANMLFG 465 (483)
T ss_pred HHHHHHHHHHHH-HHcCCcHHHHHHHHHHHhcCCCCCchhhccccccCCHHHHHHHHHHHHHH
Confidence 334444454444 45667788888767677776654 333 234567899999999887
No 57
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=80.85 E-value=2.2 Score=33.86 Aligned_cols=50 Identities=18% Similarity=0.220 Sum_probs=33.5
Q ss_pred ecCCCC-CcccchHHHHHHHH-----hCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114 323 DLDNDG-SISKSEFVIYKLKE-----MGKIAEKDILQICNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 323 d~d~d~-~v~~~e~~~~~L~~-----~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~ 375 (378)
+.|++| .++..|+....-.. .+..+++++.++.+ ++|.|++|.|+.+|.+
T Consensus 21 d~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~---elD~n~dG~Idf~EF~ 76 (93)
T cd05026 21 GKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMN---DLDSNKDNEVDFNEFV 76 (93)
T ss_pred ccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHH---HhCCCCCCCCCHHHHH
Confidence 467887 49998875432122 23446677766655 5578999999988754
No 58
>PTZ00183 centrin; Provisional
Probab=80.27 E-value=2 Score=36.56 Aligned_cols=52 Identities=19% Similarity=0.236 Sum_probs=37.9
Q ss_pred eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114 321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~ 375 (378)
..|.+++|.++..|+..........++++++..+. ..+|.|++|.|+.+|+.
T Consensus 98 ~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~---~~~d~~~~g~i~~~ef~ 149 (158)
T PTZ00183 98 LFDDDKTGKISLKNLKRVAKELGETITDEELQEMI---DEADRNGDGEISEEEFY 149 (158)
T ss_pred HhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH---HHhCCCCCCcCcHHHHH
Confidence 45778899999888775443333457888887665 55678999999988864
No 59
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=79.24 E-value=2.3 Score=29.12 Aligned_cols=50 Identities=32% Similarity=0.526 Sum_probs=34.7
Q ss_pred eecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114 322 ADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 322 ~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~~ 375 (378)
.|.+++|.++..|+.. .+...+ ..+++.+.. -|++.|.+++|.|+.+++.
T Consensus 9 ~d~~~~g~l~~~e~~~-~l~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~ef~ 59 (63)
T cd00051 9 FDKDGDGTISADELKA-ALKSLGEGLSEEEIDE---MIREVDKDGDGKIDFEEFL 59 (63)
T ss_pred hCCCCCCcCcHHHHHH-HHHHhCCCCCHHHHHH---HHHHhCCCCCCeEeHHHHH
Confidence 4677888898888665 345554 345555544 4666788999999988764
No 60
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=78.82 E-value=1.3 Score=44.38 Aligned_cols=47 Identities=32% Similarity=0.474 Sum_probs=28.9
Q ss_pred eeeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCcccccccc
Q 040114 320 VAADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADL 374 (378)
Q Consensus 320 ~~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~ 374 (378)
.+.|.+.||.++-+||..|. ++..+++.+-|+.+|.+++|.++++++
T Consensus 58 ~~~d~~~dg~vDy~eF~~Y~--------~~~E~~l~~~F~~iD~~hdG~i~~~Ei 104 (463)
T KOG0036|consen 58 SAMDANRDGRVDYSEFKRYL--------DNKELELYRIFQSIDLEHDGKIDPNEI 104 (463)
T ss_pred HhcccCcCCcccHHHHHHHH--------HHhHHHHHHHHhhhccccCCccCHHHH
Confidence 45677777777777777663 333344555566666666666665554
No 61
>PLN02964 phosphatidylserine decarboxylase
Probab=78.10 E-value=1.6 Score=46.75 Aligned_cols=50 Identities=32% Similarity=0.466 Sum_probs=37.8
Q ss_pred eecCCCCCcccchHHHHHHHHhCC-CCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114 322 ADLDNDGSISKSEFVIYKLKEMGK-IAEKDILQICNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 322 ~d~d~d~~v~~~e~~~~~L~~~g~-is~edi~~i~~~f~~ld~~~~G~l~~~d~~ 375 (378)
.|.+++|.++..||+.. +..++. .++|+ +.+-|+..|.|++|.|+.+||.
T Consensus 188 ~D~DgdG~IdfdEFl~l-L~~lg~~~seEE---L~eaFk~fDkDgdG~Is~dEL~ 238 (644)
T PLN02964 188 VDYDEDGQLSFSEFSDL-IKAFGNLVAANK---KEELFKAADLNGDGVVTIDELA 238 (644)
T ss_pred hCCCCCCeEcHHHHHHH-HHHhccCCCHHH---HHHHHHHhCCCCCCcCCHHHHH
Confidence 46788999999998753 334554 34454 4667888899999999999985
No 62
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=77.98 E-value=2.1 Score=38.70 Aligned_cols=54 Identities=26% Similarity=0.385 Sum_probs=37.3
Q ss_pred eeecCCCCCcccchHHH--HHHHHhCCC-CHHHHHHHH-hhhcccCCCCCcccccccc
Q 040114 321 AADLDNDGSISKSEFVI--YKLKEMGKI-AEKDILQIC-NQFDLIDDSKCGKITVADL 374 (378)
Q Consensus 321 ~~d~d~d~~v~~~e~~~--~~L~~~g~i-s~edi~~i~-~~f~~ld~~~~G~l~~~d~ 374 (378)
..|.+++|.++++|... .++...+.- ++|.+..+. +-|.+.|.|++|.|+.+|-
T Consensus 112 vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf 169 (187)
T KOG0034|consen 112 VYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEF 169 (187)
T ss_pred HhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHH
Confidence 45889999999999643 333332222 245554444 5689999999999998874
No 63
>PTZ00184 calmodulin; Provisional
Probab=77.33 E-value=2.5 Score=35.30 Aligned_cols=50 Identities=22% Similarity=0.399 Sum_probs=28.1
Q ss_pred eeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCcccccccc
Q 040114 321 AADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADL 374 (378)
Q Consensus 321 ~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~ 374 (378)
..|.+++|.++..|+... +...| .++++++..+ |++.|.|++|.|+.+|.
T Consensus 92 ~~D~~~~g~i~~~e~~~~-l~~~~~~~~~~~~~~~---~~~~d~~~~g~i~~~ef 142 (149)
T PTZ00184 92 VFDRDGNGFISAAELRHV-MTNLGEKLTDEEVDEM---IREADVDGDGQINYEEF 142 (149)
T ss_pred hhCCCCCCeEeHHHHHHH-HHHHCCCCCHHHHHHH---HHhcCCCCCCcCcHHHH
Confidence 345566666766666433 23333 3455555554 44556677777776654
No 64
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=76.02 E-value=1.1 Score=47.21 Aligned_cols=84 Identities=13% Similarity=0.208 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHhhhhhccc------------ccCCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhh
Q 040114 111 QAFIGLVLYILAGIVIYLTNG------------NFKGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIG 178 (378)
Q Consensus 111 ~~~~~l~~~l~~g~~~~~~~~------------~~~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~G 178 (378)
++.++.+-.+++|..+|+... .....+..++..|+||+.-.+..-|-|...|.+--.|++.++|+=+.
T Consensus 572 LW~lv~~SVhvVal~lYlLDrfSPFgRFk~~ds~~~ee~alnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFa 651 (993)
T KOG4440|consen 572 LWLLVGLSVHVVALMLYLLDRFSPFGRFKVNDSEEEEEDALNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFA 651 (993)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccceeeccCccchhhhcchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhh
Confidence 445555667777877875431 11122346789999999999999999999999999999999999998
Q ss_pred hhhhhhhhcchhhhhh
Q 040114 179 FGFVDILLNGLVTYIC 194 (378)
Q Consensus 179 i~~~~~~~~~~~~~l~ 194 (378)
+.+++...++++.+++
T Consensus 652 MIiVASYTANLAAFLV 667 (993)
T KOG4440|consen 652 MIIVASYTANLAAFLV 667 (993)
T ss_pred eeeehhhhhhhhhhee
Confidence 8888888888887765
No 65
>PTZ00183 centrin; Provisional
Probab=75.57 E-value=2.1 Score=36.44 Aligned_cols=51 Identities=33% Similarity=0.485 Sum_probs=36.3
Q ss_pred eecCCCCCcccchHHHHHHHH-hCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114 322 ADLDNDGSISKSEFVIYKLKE-MGKIAEKDILQICNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 322 ~d~d~d~~v~~~e~~~~~L~~-~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~ 375 (378)
.|.+++|.++..||+...-.. ..+..+++ +..-|+.+|.|++|.|+..|+.
T Consensus 62 ~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~---l~~~F~~~D~~~~G~i~~~e~~ 113 (158)
T PTZ00183 62 VDKDGSGKIDFEEFLDIMTKKLGERDPREE---ILKAFRLFDDDKTGKISLKNLK 113 (158)
T ss_pred hCCCCCCcEeHHHHHHHHHHHhcCCCcHHH---HHHHHHHhCCCCCCcCcHHHHH
Confidence 456788899999987643222 23333433 4677899999999999998875
No 66
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=74.33 E-value=4.1 Score=32.04 Aligned_cols=48 Identities=15% Similarity=0.278 Sum_probs=34.8
Q ss_pred cCCCC-CcccchHHHHHHHH-----hCC-CCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114 324 LDNDG-SISKSEFVIYKLKE-----MGK-IAEKDILQICNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 324 ~d~d~-~v~~~e~~~~~L~~-----~g~-is~edi~~i~~~f~~ld~~~~G~l~~~d~~ 375 (378)
.+++| .++..|+.. .|.. .|. .+++++.++.+ ++|.|++|.++.+|.+
T Consensus 20 ~dgdG~~I~~~eL~~-ll~~~~~~~lg~~~~~~~v~~~i~---~~D~n~dG~v~f~eF~ 74 (88)
T cd05027 20 REGDKHKLKKSELKE-LINNELSHFLEEIKEQEVVDKVME---TLDSDGDGECDFQEFM 74 (88)
T ss_pred cCCCcCEECHHHHHH-HHHHHhHHHhcCCCCHHHHHHHHH---HhCCCCCCcCcHHHHH
Confidence 56788 488888654 4455 555 46777877765 6699999999988764
No 67
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=74.32 E-value=3.8 Score=32.27 Aligned_cols=50 Identities=18% Similarity=0.312 Sum_probs=33.1
Q ss_pred ecCCCC-CcccchHHHHHHHH-----hCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114 323 DLDNDG-SISKSEFVIYKLKE-----MGKIAEKDILQICNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 323 d~d~d~-~v~~~e~~~~~L~~-----~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~ 375 (378)
+.++++ .++..|+....-.+ ..+.+++++.++. +++|.|++|.|+.++.+
T Consensus 20 ~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll---~~~D~d~DG~I~f~EF~ 75 (89)
T cd05023 20 GKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMM---KKLDLNSDGQLDFQEFL 75 (89)
T ss_pred ccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHH---HHcCCCCCCcCcHHHHH
Confidence 445554 78888875432222 1355677777764 46788999999988764
No 68
>PTZ00184 calmodulin; Provisional
Probab=73.75 E-value=3.5 Score=34.45 Aligned_cols=52 Identities=27% Similarity=0.433 Sum_probs=37.2
Q ss_pred eecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114 322 ADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 322 ~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~ 375 (378)
.|.+++|.++..||+............+ ..+...|+..|.|++|.|+..|+.
T Consensus 56 ~d~~~~g~i~~~ef~~~l~~~~~~~~~~--~~~~~~F~~~D~~~~g~i~~~e~~ 107 (149)
T PTZ00184 56 VDADGNGTIDFPEFLTLMARKMKDTDSE--EEIKEAFKVFDRDGNGFISAAELR 107 (149)
T ss_pred cCcCCCCcCcHHHHHHHHHHhccCCcHH--HHHHHHHHhhCCCCCCeEeHHHHH
Confidence 4667888999999986544333332222 244677999999999999998874
No 69
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=73.16 E-value=2.7 Score=35.38 Aligned_cols=55 Identities=18% Similarity=0.266 Sum_probs=40.0
Q ss_pred ccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040114 244 NWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRIE 299 (378)
Q Consensus 244 ~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~~~~~ 299 (378)
++.+++|+++.+++. +-++..|.+..+|++.++|.++++.+.+...+.++...+.
T Consensus 44 ~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~ 98 (148)
T PF00060_consen 44 SLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTV 98 (148)
T ss_dssp HHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 467788888877776 6677899999999999999999998888888888776544
No 70
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=73.14 E-value=2.3 Score=35.44 Aligned_cols=47 Identities=26% Similarity=0.311 Sum_probs=31.9
Q ss_pred eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCcccccccc
Q 040114 321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADL 374 (378)
Q Consensus 321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~ 374 (378)
..|.++||.++..|..... ++ ..++-+ .+-|+..|.|++|.||.++.
T Consensus 56 ~lD~d~DG~Ls~~EL~~~~---l~-~~e~~~---~~f~~~~D~n~Dg~IS~~Ef 102 (116)
T cd00252 56 QLDGNYDGKLSHHELAPIR---LD-PNEHCI---KPFFESCDLDKDGSISLDEW 102 (116)
T ss_pred HHCCCCCCcCCHHHHHHHH---cc-chHHHH---HHHHHHHCCCCCCCCCHHHH
Confidence 4688899999998866432 11 123333 34566778999999998773
No 71
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=72.91 E-value=2.9 Score=36.87 Aligned_cols=52 Identities=25% Similarity=0.431 Sum_probs=39.4
Q ss_pred eeeecCCCCCcccchHHHHHHHHhCC-CCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114 320 VAADLDNDGSISKSEFVIYKLKEMGK-IAEKDILQICNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 320 ~~~d~d~d~~v~~~e~~~~~L~~~g~-is~edi~~i~~~f~~ld~~~~G~l~~~d~~ 375 (378)
...|.|+||.|+..|.. +.|+.+|. .++|++..+ +++.|.|++|.|+.+|..
T Consensus 99 ~~fD~d~dG~Is~~eL~-~vl~~lge~~~deev~~l---l~~~d~d~dG~i~~~eF~ 151 (160)
T COG5126 99 KLFDKDHDGYISIGELR-RVLKSLGERLSDEEVEKL---LKEYDEDGDGEIDYEEFK 151 (160)
T ss_pred HHhCCCCCceecHHHHH-HHHHhhcccCCHHHHHHH---HHhcCCCCCceEeHHHHH
Confidence 35688999999987755 46777765 467888665 556678999999988764
No 72
>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=72.80 E-value=1.9 Score=46.26 Aligned_cols=86 Identities=15% Similarity=0.257 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccc--CC------CCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhh
Q 040114 109 VQQAFIGLVLYILAGIVIYLTNGNF--KG------KATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFG 180 (378)
Q Consensus 109 ~~~~~~~l~~~l~~g~~~~~~~~~~--~~------~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~ 180 (378)
..+++.+++.++++++++|+.+.-. .. ...|+...++|+++.++..-|-+ ..|.+..+|++..+|.++++.
T Consensus 342 ~~vW~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~-~~p~~~~~Rll~~~w~~~~li 420 (656)
T KOG1052|consen 342 PEVWLLILASLLLVGLLLWILERLSPYELPPRQIVTSLFSLLNCLWLTVGSLLQQGSD-EIPRSLSTRLLLGAWWLFVLI 420 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCccccceeEeecccchhhhhHHHhccCCC-ccccchhhhHHHHHHHHHHHH
Confidence 4456666777778888887554411 11 22345555666666666665544 999999999999999999998
Q ss_pred hhhhhhcchhhhhhh
Q 040114 181 FVDILLNGLVTYICD 195 (378)
Q Consensus 181 ~~~~~~~~~~~~l~~ 195 (378)
+.+...+++++.+..
T Consensus 421 l~ssYTa~L~a~Lt~ 435 (656)
T KOG1052|consen 421 LISSYTANLTAFLTV 435 (656)
T ss_pred HHHHHHHHHHHHhcc
Confidence 888877777776643
No 73
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=69.64 E-value=2.2 Score=35.48 Aligned_cols=29 Identities=17% Similarity=0.129 Sum_probs=26.3
Q ss_pred CHHHHHHHHhhhcccCCCCCccccccccc
Q 040114 347 AEKDILQICNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 347 s~edi~~i~~~f~~ld~~~~G~l~~~d~~ 375 (378)
.++...++.-.|..+|.|++|.|+.+||.
T Consensus 43 ~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~ 71 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGNYDGKLSHHELA 71 (116)
T ss_pred hHHHHHHHHHHHHHHCCCCCCcCCHHHHH
Confidence 56778889999999999999999999985
No 74
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=69.60 E-value=4.9 Score=31.67 Aligned_cols=47 Identities=15% Similarity=0.366 Sum_probs=33.3
Q ss_pred CC-CCCcccchHHHHHHHH-h-----CCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114 325 DN-DGSISKSEFVIYKLKE-M-----GKIAEKDILQICNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 325 d~-d~~v~~~e~~~~~L~~-~-----g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~ 375 (378)
++ +|.++..|.... |.. . .+.+++++..+.+ ++|.|++|.|+.+|..
T Consensus 21 dg~dG~Is~~El~~~-l~~~~g~~lg~~~s~~ei~~~~~---~~D~~~dg~I~f~eF~ 74 (94)
T cd05031 21 DGDKNTLSRKELKKL-MEKELSEFLKNQKDPMAVDKIMK---DLDQNRDGKVNFEEFV 74 (94)
T ss_pred CCCCCeECHHHHHHH-HHHHhHHHhhccccHHHHHHHHH---HhCCCCCCcCcHHHHH
Confidence 65 689998887643 232 2 2457888877765 4588999999988764
No 75
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=69.51 E-value=4.8 Score=31.56 Aligned_cols=48 Identities=19% Similarity=0.360 Sum_probs=33.8
Q ss_pred cCCCC-CcccchHHHHHHH-HhCC-----CCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114 324 LDNDG-SISKSEFVIYKLK-EMGK-----IAEKDILQICNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 324 ~d~d~-~v~~~e~~~~~L~-~~g~-----is~edi~~i~~~f~~ld~~~~G~l~~~d~~ 375 (378)
.+++| .++..|+.. .|. ..|. .+++++.++.++ +|.|++|.++.++.+
T Consensus 21 ~dg~G~~Is~~El~~-~l~~~lg~~~~~~~s~~~v~~i~~~---~D~d~~G~I~f~eF~ 75 (92)
T cd05025 21 KEGDKYKLSKKELKD-LLQTELSDFLDAQKDADAVDKIMKE---LDENGDGEVDFQEFV 75 (92)
T ss_pred ccCCCCeECHHHHHH-HHHHHHHHHccCCCCHHHHHHHHHH---HCCCCCCcCcHHHHH
Confidence 77888 488888654 333 2443 477888777665 588999999988754
No 76
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=69.33 E-value=0.19 Score=49.96 Aligned_cols=141 Identities=15% Similarity=0.144 Sum_probs=57.9
Q ss_pred ccceeeeeeeeeeeeecccc--cccCccCceeeehhhhhhhhhhhhhhc-chhhhh--hhhHHHHHhhhhhhhhh-----
Q 040114 141 PVDALYFIVVTLCTIGYGDI--VPDTTFTKLFTCVFILIGFGFVDILLN-GLVTYI--CDRQEAVFLSTMDENRE----- 210 (378)
Q Consensus 141 ~~~a~yf~~vtltTvGyGdi--~P~t~~g~~~~~~~~l~Gi~~~~~~~~-~~~~~l--~~~~~~~l~r~~~~~~~----- 210 (378)
...+.+|..++.+|-||.-. .--++..+++.++.+++|-.-.+..-+ +..+.. .+.. +.+.+..+..+.
T Consensus 177 ~~~~~f~~~s~~rTtGF~t~d~~~~~~~~~~l~~~lM~IGg~~gSTaGGiK~~r~~il~~~~-~~~~~~~~p~~~~~~~~ 255 (354)
T PF02386_consen 177 KRLSAFFQVSSLRTTGFSTVDISQWSPFTLLLLIILMFIGGSPGSTAGGIKITRFAILLKSI-REIKRLIHPGAVSPVRF 255 (354)
T ss_dssp HHHHHHHHHHTTTT----S---SS--THHHHHHHHHTTS-S-TTSS--SS-HHHHHHHHHHH-HHHHHHH-SSS-----S
T ss_pred HHHHHHHHHhhcCCcccCccChhhCCHHHHHHHHHHHHhcCccccccCCcceehhhHHHhhH-HHHHHHhcCCCccceee
Confidence 44577788889999999633 333455566666666655433222111 111111 1111 111111111100
Q ss_pred hhhhH----HHHHHHHHHHHHhhhhhhcceeecccccc-cccceeEEEEEEeccccCCcc--cC-Ccc---hhHHHHHHH
Q 040114 211 RRMRI----RIKVCLALGVVIGCLAIGTVTVHFLEDMN-WVDSFYLSVTSVTTVGYGDYA--FT-TLT---GRCFAIIWL 279 (378)
Q Consensus 211 ~~~~~----~~~~~~~~~~~i~~~~~g~~~~~~~e~~~-~~da~Y~~~~T~tTVGyGD~~--p~-t~~---gr~f~~~~i 279 (378)
+..++ ..+....+.+.++.+.+++..+...+... +.|+++=++..++|||.+=-. |. +.. +|++.++.|
T Consensus 256 ~~r~i~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lfe~~Sa~gtvGls~G~~~~~~s~~~~~~K~vli~~M 335 (354)
T PF02386_consen 256 NGRRISEQTVRKAFAFFFLYFIIVFISTLLLSLDGLDFSFFDALFEVISAFGTVGLSLGITTPNLSFSGPFSKLVLIFLM 335 (354)
T ss_dssp SS---TTSHHHHHCCHHHHHHHHHHHHHHHHHHHSS-H--HHHHHHHHHHCTT--S--SSS----SSS-HHHHHHHHHHH
T ss_pred cceeechhhhhhHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcCcCCCCCCCCCCccchhhHHHHHHHHHH
Confidence 10111 11222222222333444445555444433 688888888889999654332 22 233 899988888
Q ss_pred HHH
Q 040114 280 LVS 282 (378)
Q Consensus 280 l~g 282 (378)
++|
T Consensus 336 ~~G 338 (354)
T PF02386_consen 336 LLG 338 (354)
T ss_dssp HHH
T ss_pred HHh
Confidence 877
No 77
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=68.73 E-value=2.2 Score=37.27 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=27.9
Q ss_pred CHHHHHHHHhhhcccCCCCCcccccccccc
Q 040114 347 AEKDILQICNQFDLIDDSKCGKITVADLMY 376 (378)
Q Consensus 347 s~edi~~i~~~f~~ld~~~~G~l~~~d~~~ 376 (378)
++..|+++.+.|+-+|+|.+|.|..+||.+
T Consensus 27 ~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d 56 (171)
T KOG0031|consen 27 DQSQIQEFKEAFNLMDQNRDGFIDKEDLRD 56 (171)
T ss_pred hHHHHHHHHHHHHHHhccCCCcccHHHHHH
Confidence 588999999999999999999999999864
No 78
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=68.38 E-value=6 Score=31.24 Aligned_cols=50 Identities=20% Similarity=0.342 Sum_probs=36.4
Q ss_pred eeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114 321 AADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 321 ~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~ 375 (378)
..|.+++|.++..|+... +...| .+++++.++.+ ..|.+++|.|+.++..
T Consensus 18 ~~D~d~~G~Is~~el~~~-l~~~~-~~~~ev~~i~~---~~d~~~~g~I~~~eF~ 67 (96)
T smart00027 18 SLDKNQDGTVTGAQAKPI-LLKSG-LPQTLLAKIWN---LADIDNDGELDKDEFA 67 (96)
T ss_pred HhCCCCCCeEeHHHHHHH-HHHcC-CCHHHHHHHHH---HhcCCCCCCcCHHHHH
Confidence 456788899988886543 34454 78888877655 5678999999988764
No 79
>PRK12438 hypothetical protein; Provisional
Probab=67.49 E-value=21 Score=40.19 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=18.3
Q ss_pred EEeccccCCcccCCcchhHHHHHHHHHHHHHH
Q 040114 255 SVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAV 286 (378)
Q Consensus 255 T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~v 286 (378)
.++.-||-|+.-.-+.-.+++++-++++++++
T Consensus 244 ~~~GAgYTDv~a~LPa~~iL~~ia~i~Av~f~ 275 (991)
T PRK12438 244 TFTGAGYTDINAVLPAKLILVAIAVLCAVAFF 275 (991)
T ss_pred eEecCChhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 36778999987543444445444444444443
No 80
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=66.01 E-value=6.1 Score=30.48 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=34.2
Q ss_pred eec--CCCCCcccchHHHHHHHH-hCC-----CCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114 322 ADL--DNDGSISKSEFVIYKLKE-MGK-----IAEKDILQICNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 322 ~d~--d~d~~v~~~e~~~~~L~~-~g~-----is~edi~~i~~~f~~ld~~~~G~l~~~d~~ 375 (378)
.|. +++|.++..|+... +.. .|. .+++++.++.++ +|.|++|.|+.++.+
T Consensus 17 ~D~~~~~~G~Is~~el~~~-l~~~~g~~~~~~~~~~ei~~i~~~---~d~~~~g~I~f~eF~ 74 (88)
T cd00213 17 YSGKEGDKDTLSKKELKEL-LETELPNFLKNQKDPEAVDKIMKD---LDVNKDGKVDFQEFL 74 (88)
T ss_pred HhhccCCCCcCcHHHHHHH-HHHHhhhhccCCCCHHHHHHHHHH---hccCCCCcCcHHHHH
Confidence 466 68889998887643 222 332 357777776554 578999999988764
No 81
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=65.77 E-value=1.7 Score=45.46 Aligned_cols=85 Identities=16% Similarity=0.309 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhccc---------c-----cC---CCCCCCccceeeeeeeeeeeeecccccccCccCceee
Q 040114 109 VQQAFIGLVLYILAGIVIYLTNG---------N-----FK---GKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFT 171 (378)
Q Consensus 109 ~~~~~~~l~~~l~~g~~~~~~~~---------~-----~~---~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~ 171 (378)
.-++..+++.|+.+++++|+... . +. .....+.++++||+...+.-=| -|+.|.+--||+..
T Consensus 547 ~eIWm~ivfaYiGVSvvlFLVSrFSPYEwh~Ee~~rg~~t~~~~~NeFgifNsLWFsLgAFMQQG-~DI~PRslSGRIvg 625 (897)
T KOG1054|consen 547 YEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFERGRFTPSDPPNEFGIFNSLWFSLGAFMQQG-CDISPRSLSGRIVG 625 (897)
T ss_pred HHHHHHHHHHHhcceEEEEEEeccCchheeccccccCCCCCCCCCccchhhHHHHHHHHHHHhcC-CCCCccccccceec
Confidence 44566778889999999886531 0 11 1122457899999876665555 49999999999999
Q ss_pred ehhhhhhhhhhhhhhcchhhhhh
Q 040114 172 CVFILIGFGFVDILLNGLVTYIC 194 (378)
Q Consensus 172 ~~~~l~Gi~~~~~~~~~~~~~l~ 194 (378)
-+|-++-+.+++...++++.++.
T Consensus 626 gvWWFFTlIIiSSYTANLAAFLT 648 (897)
T KOG1054|consen 626 GVWWFFTLIIISSYTANLAAFLT 648 (897)
T ss_pred cchhhhhhhhhhhhhhHHHHHHh
Confidence 99999999888888888877664
No 82
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=65.43 E-value=9 Score=33.23 Aligned_cols=56 Identities=20% Similarity=0.408 Sum_probs=41.5
Q ss_pred eeeeecCCCCCcccchH--HHHHHHHhCCCCHHHHHHHHhh-hcccCCCCCccccccccc
Q 040114 319 LVAADLDNDGSISKSEF--VIYKLKEMGKIAEKDILQICNQ-FDLIDDSKCGKITVADLM 375 (378)
Q Consensus 319 l~~~d~d~d~~v~~~e~--~~~~L~~~g~is~edi~~i~~~-f~~ld~~~~G~l~~~d~~ 375 (378)
....|.++|+.+...+. .+.+| -.+..++|++..++++ -++.|.||+|+|+..|..
T Consensus 114 FkIYDfd~D~~i~~~DL~~~l~~l-Tr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe 172 (189)
T KOG0038|consen 114 FKIYDFDGDEFIGHDDLEKTLTSL-TRDELSDEEVELICEKVIEEADLDGDGKLSFAEFE 172 (189)
T ss_pred eEEeecCCCCcccHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHH
Confidence 46778899998876653 33333 2467788888887766 588999999999988753
No 83
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=64.95 E-value=2.4 Score=46.27 Aligned_cols=60 Identities=18% Similarity=0.282 Sum_probs=36.8
Q ss_pred HHHHHhhhhhhcceeeccc-------cc----ccccceeEEEEE----EeccccCCcccCCcchhHHHHHHHHHHHHH
Q 040114 223 LGVVIGCLAIGTVTVHFLE-------DM----NWVDSFYLSVTS----VTTVGYGDYAFTTLTGRCFAIIWLLVSTLA 285 (378)
Q Consensus 223 ~~~~i~~~~~g~~~~~~~e-------~~----~~~da~Y~~~~T----~tTVGyGD~~p~t~~gr~f~~~~il~g~~~ 285 (378)
+..+++++++|.++|..+| +. .+++|++.++.+ ++||-+++. +++..++.+++|.+|..-
T Consensus 588 l~tt~iL~~ig~ilf~lLE~nn~tl~~lp~g~Ril~aLFQSVstRTAGFntVdls~L---spatlvl~iiLMyIGa~P 662 (800)
T TIGR00934 588 FFTLVGLNAIDLILFIILDWGSSVVDGLSKGIKVLNGLFQSVSTRTAGFTVVDLSQL---HPAIQVSYMLMMYVSVLP 662 (800)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHHhcccccccccccchHhc---ChhHHHHHHHHHHhccCC
Confidence 3344455666777777666 11 356788877775 444544444 346677888888887554
No 84
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=64.16 E-value=7.2 Score=30.47 Aligned_cols=47 Identities=21% Similarity=0.405 Sum_probs=30.8
Q ss_pred CCCCcccchHHHHHHHHhCC-CC----HHHHHHHHhhhcccCCCCCccccccccc
Q 040114 326 NDGSISKSEFVIYKLKEMGK-IA----EKDILQICNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 326 ~d~~v~~~e~~~~~L~~~g~-is----~edi~~i~~~f~~ld~~~~G~l~~~d~~ 375 (378)
.++.++..|+..-.-...|. .+ ++++..+.+++ |.|++|.++.+|..
T Consensus 23 ~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~---D~d~dG~I~f~eF~ 74 (88)
T cd05030 23 HPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDL---DTNQDGQLSFEEFL 74 (88)
T ss_pred CcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHc---CCCCCCcCcHHHHH
Confidence 45678887765322123433 33 78887776555 88999999988764
No 85
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=63.86 E-value=5.9 Score=34.85 Aligned_cols=17 Identities=47% Similarity=0.774 Sum_probs=7.5
Q ss_pred hhcccCCCCCccccccc
Q 040114 357 QFDLIDDSKCGKITVAD 373 (378)
Q Consensus 357 ~f~~ld~~~~G~l~~~d 373 (378)
.|+..|.|++|.||+.+
T Consensus 111 afrl~D~D~~Gkis~~~ 127 (172)
T KOG0028|consen 111 AFRLFDDDKTGKISQRN 127 (172)
T ss_pred HHHcccccCCCCcCHHH
Confidence 34444444444444433
No 86
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=63.70 E-value=3.3 Score=32.02 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=24.2
Q ss_pred HHHHHHHHhhhcccCC--CCCccccccccc
Q 040114 348 EKDILQICNQFDLIDD--SKCGKITVADLM 375 (378)
Q Consensus 348 ~edi~~i~~~f~~ld~--~~~G~l~~~d~~ 375 (378)
++++..+.+.|..+|. |++|.|+.++|.
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~ 33 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELK 33 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHH
Confidence 5777888899999999 899999988875
No 87
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=60.05 E-value=6.2 Score=34.79 Aligned_cols=47 Identities=19% Similarity=0.379 Sum_probs=33.9
Q ss_pred CCCCcccchHHHHHHHHhCCC-CHHHHHHHHhhhcccCCCCCccccccccc
Q 040114 326 NDGSISKSEFVIYKLKEMGKI-AEKDILQICNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 326 ~d~~v~~~e~~~~~L~~~g~i-s~edi~~i~~~f~~ld~~~~G~l~~~d~~ 375 (378)
+.+.++-.+|+..+=...+.- ++|++ ...|+..|.||+|.|+..+|.
T Consensus 68 ~~~~idf~~Fl~~ms~~~~~~~~~Eel---~~aF~~fD~d~dG~Is~~eL~ 115 (160)
T COG5126 68 GNETVDFPEFLTVMSVKLKRGDKEEEL---REAFKLFDKDHDGYISIGELR 115 (160)
T ss_pred CCCccCHHHHHHHHHHHhccCCcHHHH---HHHHHHhCCCCCceecHHHHH
Confidence 557888888887543334333 34444 678999999999999998875
No 88
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=59.96 E-value=10 Score=32.53 Aligned_cols=52 Identities=23% Similarity=0.269 Sum_probs=38.1
Q ss_pred eeeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCcccccccc
Q 040114 320 VAADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADL 374 (378)
Q Consensus 320 ~~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~ 374 (378)
...|.+++|.++.+|+...+-..-.+.+++++..+ +++.|.|++|.++.++.
T Consensus 92 ~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~m---i~~~d~d~dg~i~f~ef 143 (151)
T KOG0027|consen 92 RVFDKDGDGFISASELKKVLTSLGEKLTDEECKEM---IREVDVDGDGKVNFEEF 143 (151)
T ss_pred HHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHH---HHhcCCCCCCeEeHHHH
Confidence 35688999999999987655555566777777555 45667799999876553
No 89
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=58.00 E-value=3 Score=23.56 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=17.1
Q ss_pred HhhhcccCCCCCccccccccc
Q 040114 355 CNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 355 ~~~f~~ld~~~~G~l~~~d~~ 375 (378)
.+-|+..|.|++|.++.+|+.
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~ 23 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFK 23 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHH
Confidence 456788899999999988864
No 90
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=57.91 E-value=3 Score=29.93 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=18.2
Q ss_pred HhhhcccCCCCCccccccccc
Q 040114 355 CNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 355 ~~~f~~ld~~~~G~l~~~d~~ 375 (378)
.+.|+.+|.|++|.|+.+|+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~ 22 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEAR 22 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHH
Confidence 457899999999999999875
No 91
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=57.22 E-value=0.33 Score=48.22 Aligned_cols=38 Identities=18% Similarity=0.292 Sum_probs=19.6
Q ss_pred ccceeEEEEEEeccccCCcccC--CcchhHHHHHHHHHHH
Q 040114 246 VDSFYLSVTSVTTVGYGDYAFT--TLTGRCFAIIWLLVST 283 (378)
Q Consensus 246 ~da~Y~~~~T~tTVGyGD~~p~--t~~gr~f~~~~il~g~ 283 (378)
..+.++..++.+|-||.-.... ++..+++.++.|++|-
T Consensus 178 ~~~~f~~~s~~rTtGF~t~d~~~~~~~~~~l~~~lM~IGg 217 (354)
T PF02386_consen 178 RLSAFFQVSSLRTTGFSTVDISQWSPFTLLLLIILMFIGG 217 (354)
T ss_dssp HHHHHHHHHTTTT----S---SS--THHHHHHHHHTTS-S
T ss_pred HHHHHHHHhhcCCcccCccChhhCCHHHHHHHHHHHHhcC
Confidence 4466777788899999765443 3455777777777663
No 92
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=56.69 E-value=3.2 Score=45.27 Aligned_cols=70 Identities=14% Similarity=0.129 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhhhh-hcccccCCCCC--C--Cccceeeeeeeeeeeeecc--cccccCccCceeeehhhhhhhhh
Q 040114 111 QAFIGLVLYILAGIVIY-LTNGNFKGKAT--F--KPVDALYFIVVTLCTIGYG--DIVPDTTFTKLFTCVFILIGFGF 181 (378)
Q Consensus 111 ~~~~~l~~~l~~g~~~~-~~~~~~~~~~~--~--~~~~a~yf~~vtltTvGyG--di~P~t~~g~~~~~~~~l~Gi~~ 181 (378)
+++...+++++++.++| +.+-+-...+. | .+.+|++-++.+ =|-|+- |+.-.+++.+++.++.+.+|..-
T Consensus 586 ill~tt~iL~~ig~ilf~lLE~nn~tl~~lp~g~Ril~aLFQSVst-RTAGFntVdls~Lspatlvl~iiLMyIGa~P 662 (800)
T TIGR00934 586 WLFFTLVGLNAIDLILFIILDWGSSVVDGLSKGIKVLNGLFQSVST-RTAGFTVVDLSQLHPAIQVSYMLMMYVSVLP 662 (800)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHHhccc-ccccccccchHhcChhHHHHHHHHHHhccCC
Confidence 34455555666666666 33321111111 1 256666666554 566764 33444666777777777766543
No 93
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=56.44 E-value=9.4 Score=34.73 Aligned_cols=51 Identities=29% Similarity=0.401 Sum_probs=36.9
Q ss_pred eeecCCCCCcccchHHHHH-HHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114 321 AADLDNDGSISKSEFVIYK-LKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 321 ~~d~d~d~~v~~~e~~~~~-L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~ 375 (378)
+.|.++||.++-.||+... +...|. .++-+.-+ |+-.|.||+|.|+.+++.
T Consensus 72 ~fD~~~dg~i~F~Efi~als~~~rGt--~eekl~w~--F~lyD~dgdG~It~~Eml 123 (193)
T KOG0044|consen 72 TFDKNKDGTIDFLEFICALSLTSRGT--LEEKLKWA--FRLYDLDGDGYITKEEML 123 (193)
T ss_pred HhcccCCCCcCHHHHHHHHHHHcCCc--HHHHhhhh--heeecCCCCceEcHHHHH
Confidence 4577899999999987654 233444 34444444 999999999999988764
No 94
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=54.19 E-value=8.3 Score=39.20 Aligned_cols=54 Identities=33% Similarity=0.450 Sum_probs=43.1
Q ss_pred eeeecCCCCCcccchHHHHH-HH---HhCCCCHHHHHHHHhhhcccCCCCCcccccccccc
Q 040114 320 VAADLDNDGSISKSEFVIYK-LK---EMGKIAEKDILQICNQFDLIDDSKCGKITVADLMY 376 (378)
Q Consensus 320 ~~~d~d~d~~v~~~e~~~~~-L~---~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~~ 376 (378)
.++|.|+.|.++..||.... |. ..+.++++++.++++ ..|.|++|.++..++..
T Consensus 554 ~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~---~mD~NkDG~IDlNEfLe 611 (631)
T KOG0377|consen 554 NIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELAR---SMDLNKDGKIDLNEFLE 611 (631)
T ss_pred HHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHH---hhccCCCCcccHHHHHH
Confidence 46899999999999997542 32 268889999988876 56899999999888764
No 95
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=53.64 E-value=8.8 Score=38.78 Aligned_cols=40 Identities=35% Similarity=0.448 Sum_probs=31.1
Q ss_pred eeeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114 320 VAADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 320 ~~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~ 375 (378)
...|.++||.++.+|++. +..-|+.+|.|++|.++.+|+.
T Consensus 341 ~~~D~dgdG~Is~~E~~~----------------~~~~F~~~D~d~DG~Is~eEf~ 380 (391)
T PRK12309 341 RLYDLDGDGFITREEWLG----------------SDAVFDALDLNHDGKITPEEMR 380 (391)
T ss_pred HHhCCCCCCcCcHHHHHH----------------HHHHHHHhCCCCCCCCcHHHHH
Confidence 456778888888888741 3445999999999999998864
No 96
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=52.37 E-value=7.2 Score=30.79 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=23.8
Q ss_pred HHHHHHHHhhhcccCC-CCCccccccccc
Q 040114 348 EKDILQICNQFDLIDD-SKCGKITVADLM 375 (378)
Q Consensus 348 ~edi~~i~~~f~~ld~-~~~G~l~~~d~~ 375 (378)
++-+..+.+.|+..|. |++|+|+.+||.
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i~~~ELk 32 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESLTASEFQ 32 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeECHHHHH
Confidence 4556778899999999 999999998874
No 97
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=51.98 E-value=10 Score=41.15 Aligned_cols=84 Identities=19% Similarity=0.317 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccCCC-----------CCCCccceeeeeeeee--eeeeccccccc--C---ccCce
Q 040114 108 IVQQAFIGLVLYILAGIVIYLTNGNFKGK-----------ATFKPVDALYFIVVTL--CTIGYGDIVPD--T---TFTKL 169 (378)
Q Consensus 108 ~~~~~~~~l~~~l~~g~~~~~~~~~~~~~-----------~~~~~~~a~yf~~vtl--tTvGyGdi~P~--t---~~g~~ 169 (378)
+++.+++.+++.+.++..+|+........ ...+..|++.-.+.++ .|+||||..-. + ..+++
T Consensus 543 L~RF~~IY~Vfl~GFsqAfy~if~~~~~~~~~~~~~~~~~~m~~~~ds~~~~~l~lf~ftig~~dl~~~~~~~~~~~~ki 622 (782)
T KOG3676|consen 543 LFRFLLIYLVFLVGFSQAFYSIFQTCDRDSSPNDKNVESNPMCNPYDSFSTFLLTLFEFTIGMGDLEACENTDYPVLFKI 622 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccccCChhhHHHHHHHHHHHHhhhhhhhhhcccccchHHHHH
Confidence 45556666667777777777433222111 1233455544333333 78999998654 3 34555
Q ss_pred eeehhhhh-hhhhhhhhhcchhh
Q 040114 170 FTCVFILI-GFGFVDILLNGLVT 191 (378)
Q Consensus 170 ~~~~~~l~-Gi~~~~~~~~~~~~ 191 (378)
+.++|+++ -|.++-++|+-+++
T Consensus 623 lfv~y~ilv~ILllNMLIAMMg~ 645 (782)
T KOG3676|consen 623 LFVAYMILVTILLLNMLIAMMGN 645 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 55555543 34444444444443
No 98
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.40 E-value=7.8 Score=37.76 Aligned_cols=55 Identities=35% Similarity=0.503 Sum_probs=39.6
Q ss_pred eeeeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114 319 LVAADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 319 l~~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~ 375 (378)
..++|.|+||.++.+||....--+. .-.-.++ -+....+++|.|++|+|+.++.+
T Consensus 169 Fk~AD~d~dg~lt~EEF~aFLHPEe-~p~M~~i-Vi~Etl~d~Dkn~DG~I~~eEfi 223 (325)
T KOG4223|consen 169 FKAADQDGDGSLTLEEFTAFLHPEE-HPHMKDI-VIAETLEDIDKNGDGKISLEEFI 223 (325)
T ss_pred HhhcccCCCCcccHHHHHhccChhh-cchHHHH-HHHHHHhhcccCCCCceeHHHHH
Confidence 4578999999999999987643333 1111222 45678899999999999987754
No 99
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=50.18 E-value=47 Score=36.31 Aligned_cols=71 Identities=14% Similarity=0.177 Sum_probs=36.8
Q ss_pred HHHHhhhhhhcceeeccccc-----------------ccccceeEEEEEE--eccccCCcccCCcc-----hhHHHHHHH
Q 040114 224 GVVIGCLAIGTVTVHFLEDM-----------------NWVDSFYLSVTSV--TTVGYGDYAFTTLT-----GRCFAIIWL 279 (378)
Q Consensus 224 ~~~i~~~~~g~~~~~~~e~~-----------------~~~da~Y~~~~T~--tTVGyGD~~p~t~~-----gr~f~~~~i 279 (378)
.-+++++.++..++.++++. +..|++.-.+.|+ .|+||||....... +++..+.|+
T Consensus 549 IY~Vfl~GFsqAfy~if~~~~~~~~~~~~~~~~~~m~~~~ds~~~~~l~lf~ftig~~dl~~~~~~~~~~~~kilfv~y~ 628 (782)
T KOG3676|consen 549 IYLVFLVGFSQAFYSIFQTCDRDSSPNDKNVESNPMCNPYDSFSTFLLTLFEFTIGMGDLEACENTDYPVLFKILFVAYM 628 (782)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccccccccccccccCChhhHHHHHHHHHHHHhhhhhhhhhcccccchHHHHHHHHHHH
Confidence 33344556666666665531 2344544444454 48999999765433 455444444
Q ss_pred HH-HHHHHHHHHHHHH
Q 040114 280 LV-STLAVARAFLYLT 294 (378)
Q Consensus 280 l~-g~~~va~~~~~l~ 294 (378)
++ .+..+=++++-++
T Consensus 629 ilv~ILllNMLIAMMg 644 (782)
T KOG3676|consen 629 ILVTILLLNMLIAMMG 644 (782)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 43 3333333343333
No 100
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=50.02 E-value=11 Score=34.83 Aligned_cols=47 Identities=34% Similarity=0.398 Sum_probs=32.5
Q ss_pred eecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccccC
Q 040114 322 ADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLMYS 377 (378)
Q Consensus 322 ~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~~~ 377 (378)
.|.+++|.+.-.||..- + +-+..-.+-|+..|.|+||+|+..||.+|
T Consensus 103 fd~~~~G~i~f~EF~~L-w--------~~i~~Wr~vF~~~D~D~SG~I~~sEL~~A 149 (221)
T KOG0037|consen 103 FDRDNSGTIGFKEFKAL-W--------KYINQWRNVFRTYDRDRSGTIDSSELRQA 149 (221)
T ss_pred hcCCCCCccCHHHHHHH-H--------HHHHHHHHHHHhcccCCCCcccHHHHHHH
Confidence 45667777777777532 1 23455667788888899999988888654
No 101
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=47.95 E-value=28 Score=36.43 Aligned_cols=46 Identities=13% Similarity=0.271 Sum_probs=30.4
Q ss_pred ecccccccccceeEEEEEEeccccCCcccCCc-------chhHHHHHHHHHHHH
Q 040114 238 HFLEDMNWVDSFYLSVTSVTTVGYGDYAFTTL-------TGRCFAIIWLLVSTL 284 (378)
Q Consensus 238 ~~~e~~~~~da~Y~~~~T~tTVGyGD~~p~t~-------~gr~f~~~~il~g~~ 284 (378)
....+++++||++.++.+++|-||- ..+.+. .-.+.++++|++|-.
T Consensus 192 ~~~~gm~~~dAi~hs~Sa~~ngGFS-~~~~Si~~f~~~~~i~~i~~~liI~Ggi 244 (499)
T COG0168 192 FILAGMPLFDAIFHSMSAFNNGGFS-THDASIGYFNGSPLINLIITILIILGGI 244 (499)
T ss_pred HHhccCCHHHHHHHHHHHhhcCCCC-CCcchhhhcccChhHHHHHHHHHHHhcC
Confidence 3355678899999999999999997 443322 223455555655533
No 102
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=47.22 E-value=7.9 Score=42.61 Aligned_cols=54 Identities=17% Similarity=0.386 Sum_probs=40.1
Q ss_pred CCCccceeeeeeeeeeeeecccccc----cCccCceeeehhhhhhhhhhhhhhcchhhhhhh
Q 040114 138 TFKPVDALYFIVVTLCTIGYGDIVP----DTTFTKLFTCVFILIGFGFVDILLNGLVTYICD 195 (378)
Q Consensus 138 ~~~~~~a~yf~~vtltTvGyGdi~P----~t~~g~~~~~~~~l~Gi~~~~~~~~~~~~~l~~ 195 (378)
..++..|+|.+...+ |+..+| ..+.+|+...+|+++++.+++...++++.+++.
T Consensus 607 ~FtigkaiwllwaLv----FnnsVpv~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMIq 664 (1258)
T KOG1053|consen 607 SFTIGKAIWLLWALV----FNNSVPVENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQ 664 (1258)
T ss_pred ceehhhHHHHHHHHH----hCCCcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566666444322 566655 467889999999999999999999999887764
No 103
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=45.76 E-value=18 Score=36.59 Aligned_cols=52 Identities=23% Similarity=0.468 Sum_probs=38.1
Q ss_pred eeeeecCCCCCcccchHHHHHHHHhC-CCCHHHHHHHHhhhcccCCCCCcccccccc
Q 040114 319 LVAADLDNDGSISKSEFVIYKLKEMG-KIAEKDILQICNQFDLIDDSKCGKITVADL 374 (378)
Q Consensus 319 l~~~d~d~d~~v~~~e~~~~~L~~~g-~is~edi~~i~~~f~~ld~~~~G~l~~~d~ 374 (378)
+..+|.++||.++.+|-.. .|+.+| ++++|+.. +-|+..|.|++++|+.++-
T Consensus 88 F~~iD~~hdG~i~~~Ei~~-~l~~~gi~l~de~~~---k~~e~~d~~g~~~I~~~e~ 140 (463)
T KOG0036|consen 88 FQSIDLEHDGKIDPNEIWR-YLKDLGIQLSDEKAA---KFFEHMDKDGKATIDLEEW 140 (463)
T ss_pred HhhhccccCCccCHHHHHH-HHHHhCCccCHHHHH---HHHHHhccCCCeeeccHHH
Confidence 3467889999999888655 455555 45666653 3588899999999988753
No 104
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=45.71 E-value=12 Score=29.86 Aligned_cols=45 Identities=13% Similarity=0.229 Sum_probs=27.5
Q ss_pred CCCcccchHHHHHHHHh-----CCCCHHHHHHHHhhhcccCCCCCcccccccc
Q 040114 327 DGSISKSEFVIYKLKEM-----GKIAEKDILQICNQFDLIDDSKCGKITVADL 374 (378)
Q Consensus 327 d~~v~~~e~~~~~L~~~-----g~is~edi~~i~~~f~~ld~~~~G~l~~~d~ 374 (378)
++.+++.|+..-.-.+. +..+++.+ -+-|+.||.|++|.++..+.
T Consensus 21 ~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~v---d~im~~LD~n~Dg~vdF~EF 70 (91)
T cd05024 21 KNYLNRDDLQKLMEKEFSEFLKNQNDPMAV---DKIMKDLDDCRDGKVGFQSF 70 (91)
T ss_pred CCcCCHHHHHHHHHHHhHHHHcCCCCHHHH---HHHHHHhCCCCCCcCcHHHH
Confidence 44677877643222222 22244444 44567889999999998764
No 105
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=44.75 E-value=11 Score=29.47 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=20.3
Q ss_pred HHHHHHHhhhcccC-CCCCc-cccccccc
Q 040114 349 KDILQICNQFDLID-DSKCG-KITVADLM 375 (378)
Q Consensus 349 edi~~i~~~f~~ld-~~~~G-~l~~~d~~ 375 (378)
.-+..+.+.|+..| .|++| .|+.+||.
T Consensus 6 ~~~~~l~~~F~~fDd~dg~G~~Is~~El~ 34 (92)
T cd05025 6 TAMETLINVFHAHSGKEGDKYKLSKKELK 34 (92)
T ss_pred HHHHHHHHHHHHHhcccCCCCeECHHHHH
Confidence 33456778888886 99999 59988874
No 106
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=44.59 E-value=11 Score=29.72 Aligned_cols=26 Identities=8% Similarity=0.091 Sum_probs=20.1
Q ss_pred HHHHHHhhhcccCC-CC-Cccccccccc
Q 040114 350 DILQICNQFDLIDD-SK-CGKITVADLM 375 (378)
Q Consensus 350 di~~i~~~f~~ld~-~~-~G~l~~~d~~ 375 (378)
-...+.+.|+..|. |+ +|.|+.+||.
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~ 33 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELK 33 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHH
Confidence 35567788888886 87 6999988875
No 107
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=44.17 E-value=18 Score=25.64 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=17.7
Q ss_pred HHHhhhcccCCCCCccccccccc
Q 040114 353 QICNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 353 ~i~~~f~~ld~~~~G~l~~~d~~ 375 (378)
.+..-|++.|.+++|.|..+++.
T Consensus 22 yA~~LFq~~D~s~~g~Le~~Ef~ 44 (51)
T PF14788_consen 22 YARQLFQECDKSQSGRLEGEEFE 44 (51)
T ss_dssp HHHHHHHHH-SSSSSEBEHHHHH
T ss_pred HHHHHHHHhcccCCCCccHHHHH
Confidence 34558999999999999987764
No 108
>PLN02964 phosphatidylserine decarboxylase
Probab=44.12 E-value=20 Score=38.67 Aligned_cols=50 Identities=10% Similarity=0.122 Sum_probs=37.8
Q ss_pred eeecCCCCCcccchHHHHHHHHhC--CCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114 321 AADLDNDGSISKSEFVIYKLKEMG--KIAEKDILQICNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 321 ~~d~d~d~~v~~~e~~~~~L~~~g--~is~edi~~i~~~f~~ld~~~~G~l~~~d~~ 375 (378)
..|.++||.+ +...+..+| ..++++...+.+-|+..|.|++|.|+.+|+.
T Consensus 151 lfD~dgdG~i-----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl 202 (644)
T PLN02964 151 LLDPSSSNKV-----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFS 202 (644)
T ss_pred HHCCCCCCcC-----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHH
Confidence 4466677764 444566788 5778876677788888999999999998875
No 109
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=44.11 E-value=8.9 Score=31.67 Aligned_cols=32 Identities=16% Similarity=0.117 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114 344 GKIAEKDILQICNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 344 g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~ 375 (378)
.....+....+.=.|.+||.|++|.|+.+||.
T Consensus 46 ~~~~~~~~~~~~W~F~~LD~n~d~~L~~~El~ 77 (113)
T PF10591_consen 46 SSSYSECKRVVHWKFCQLDRNKDGVLDRSELK 77 (113)
T ss_dssp HHTGGGGHHHHHHHHHHH--T-SSEE-TTTTG
T ss_pred ccchhhhhhhhhhhHhhhcCCCCCccCHHHHH
Confidence 34445666677889999999999999999985
No 110
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=44.04 E-value=16 Score=32.01 Aligned_cols=60 Identities=23% Similarity=0.278 Sum_probs=34.6
Q ss_pred CCcCCeeeeecCCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114 314 MTLGDLVAADLDNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 314 ~~~~~l~~~d~d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~ 375 (378)
.+.+++.++--...|.+.-.-|+.-.-.++.-.++|++ |.+.|...|.+++|+|..+.|.
T Consensus 65 ~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~--I~~AF~~FD~~~~G~I~~d~lr 124 (171)
T KOG0031|consen 65 ASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEV--ILNAFKTFDDEGSGKIDEDYLR 124 (171)
T ss_pred CCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHH--HHHHHHhcCccCCCccCHHHHH
Confidence 33334444444444444444444333333444444444 5688999999999999887664
No 111
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=43.66 E-value=12 Score=29.28 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=22.2
Q ss_pred HHHHHHHHhhhcccC-CCCCc-cccccccc
Q 040114 348 EKDILQICNQFDLID-DSKCG-KITVADLM 375 (378)
Q Consensus 348 ~edi~~i~~~f~~ld-~~~~G-~l~~~d~~ 375 (378)
++-+..+.+.|+..| .|++| .|+.+||.
T Consensus 4 e~~~~~l~~aF~~fD~~dgdG~~I~~~eL~ 33 (88)
T cd05027 4 EKAMVALIDVFHQYSGREGDKHKLKKSELK 33 (88)
T ss_pred HHHHHHHHHHHHHhcccCCCcCEECHHHHH
Confidence 455677888999998 68999 59988874
No 112
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=42.27 E-value=7 Score=31.84 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHHhhhcccCCCCCcccccccc
Q 040114 344 GKIAEKDILQICNQFDLIDDSKCGKITVADL 374 (378)
Q Consensus 344 g~is~edi~~i~~~f~~ld~~~~G~l~~~d~ 374 (378)
-+++++|.....+.|+.+| +++|.|+.++.
T Consensus 2 ~~ls~~e~~~y~~~F~~l~-~~~g~isg~~a 31 (104)
T PF12763_consen 2 PKLSPEEKQKYDQIFQSLD-PQDGKISGDQA 31 (104)
T ss_dssp ---SCCHHHHHHHHHHCTS-SSTTEEEHHHH
T ss_pred CCCCHHHHHHHHHHHHhcC-CCCCeEeHHHH
Confidence 4677788888888888887 46787776654
No 113
>PF14658 EF-hand_9: EF-hand domain
Probab=42.14 E-value=21 Score=26.71 Aligned_cols=51 Identities=16% Similarity=0.298 Sum_probs=34.8
Q ss_pred eeeecCCCCCcccchHHHHHHHHhCC--CCHHHHHHHHhhhcccCCCCC-cccccccc
Q 040114 320 VAADLDNDGSISKSEFVIYKLKEMGK--IAEKDILQICNQFDLIDDSKC-GKITVADL 374 (378)
Q Consensus 320 ~~~d~d~d~~v~~~e~~~~~L~~~g~--is~edi~~i~~~f~~ld~~~~-G~l~~~d~ 374 (378)
.+-|.++.|.|...+.+ ..|..+|- .+++++..+. +++|.++. |.++.+|.
T Consensus 5 ~~fD~~~tG~V~v~~l~-~~Lra~~~~~p~e~~Lq~l~---~elDP~g~~~~v~~d~F 58 (66)
T PF14658_consen 5 DAFDTQKTGRVPVSDLI-TYLRAVTGRSPEESELQDLI---NELDPEGRDGSVNFDTF 58 (66)
T ss_pred hhcCCcCCceEeHHHHH-HHHHHHcCCCCcHHHHHHHH---HHhCCCCCCceEeHHHH
Confidence 45577788887666544 45667665 4556665554 57788888 99998874
No 114
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=40.86 E-value=18 Score=37.83 Aligned_cols=58 Identities=17% Similarity=0.200 Sum_probs=38.1
Q ss_pred HHHhhhhhhcceeecccccccccceeEEEEEEeccccCCccc--CCcch------hHHHHHHHHHH
Q 040114 225 VVIGCLAIGTVTVHFLEDMNWVDSFYLSVTSVTTVGYGDYAF--TTLTG------RCFAIIWLLVS 282 (378)
Q Consensus 225 ~~i~~~~~g~~~~~~~e~~~~~da~Y~~~~T~tTVGyGD~~p--~t~~g------r~f~~~~il~g 282 (378)
+.++++++++......+..++.|+++=++.++.|||-|=-.. .+..+ |+..++.|++|
T Consensus 405 l~~~~~~i~~~~l~~~~~~~~~~~lfEv~SA~gtVGlSlG~t~~~~~~~~~~~~~K~vli~~M~~G 470 (499)
T COG0168 405 LYLLILIIGALILILTGYDPFIDALFEVVSAFGTVGLSLGITGDLASNFALPPLAKLVLIALMLIG 470 (499)
T ss_pred HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHhhcCCCCCCCCCCCccccccCchHHHHHHHHHHhh
Confidence 334444555555554443379999999999999998754332 23334 88888888777
No 115
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=40.74 E-value=13 Score=29.29 Aligned_cols=27 Identities=11% Similarity=0.106 Sum_probs=19.1
Q ss_pred HHHHHHHhhhcccC-CCCCc-cccccccc
Q 040114 349 KDILQICNQFDLID-DSKCG-KITVADLM 375 (378)
Q Consensus 349 edi~~i~~~f~~ld-~~~~G-~l~~~d~~ 375 (378)
.-+..+.+.|++.| .|++| +|+.+||.
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~ 35 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELK 35 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHH
Confidence 44566677777777 67887 58887764
No 116
>PRK00068 hypothetical protein; Validated
Probab=37.92 E-value=1.8e+02 Score=32.98 Aligned_cols=31 Identities=13% Similarity=0.110 Sum_probs=17.0
Q ss_pred EEeccccCCcccCCcchhHHHHHHHHHHHHH
Q 040114 255 SVTTVGYGDYAFTTLTGRCFAIIWLLVSTLA 285 (378)
Q Consensus 255 T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~ 285 (378)
.++.-||-|+.-.=+.-.+++++-+++++++
T Consensus 244 ~v~GA~YTDv~a~Lpa~~iL~~ia~i~a~~~ 274 (970)
T PRK00068 244 VFTGASYTDINAVLPAKLILLVIAVICAIAV 274 (970)
T ss_pred EEecCChHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3667788898754333344444444444433
No 117
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=34.97 E-value=21 Score=32.06 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=34.2
Q ss_pred ccccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHH
Q 040114 242 DMNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVS 282 (378)
Q Consensus 242 ~~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g 282 (378)
..+|+|-+||+++.-+|-.=.|..+.+..-|-.+..-.+++
T Consensus 130 ~P~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllS 170 (180)
T PF07077_consen 130 EPDYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLS 170 (180)
T ss_pred CCCchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHH
Confidence 45899999999999999999999999988887755555444
No 118
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.50 E-value=22 Score=34.76 Aligned_cols=55 Identities=25% Similarity=0.322 Sum_probs=35.6
Q ss_pred eeecCCCCCcccchHHHHHHHHhCCCC-HHHH-HHHHhhhcccCCCCCccccccccc
Q 040114 321 AADLDNDGSISKSEFVIYKLKEMGKIA-EKDI-LQICNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 321 ~~d~d~d~~v~~~e~~~~~L~~~g~is-~edi-~~i~~~f~~ld~~~~G~l~~~d~~ 375 (378)
-.|-++||.|+..||+-.+.-..|.-. ++-+ .+--+-|+..|.|++|.|+.++|.
T Consensus 208 d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~ 264 (325)
T KOG4223|consen 208 DIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELL 264 (325)
T ss_pred hcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHh
Confidence 457789999999999976654444211 2222 222233445688999999988875
No 119
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=31.58 E-value=14 Score=39.26 Aligned_cols=54 Identities=17% Similarity=0.336 Sum_probs=48.1
Q ss_pred cccccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040114 243 MNWVDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTEL 296 (378)
Q Consensus 243 ~~~~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~~ 296 (378)
.++..|+||+--.+-.-|-|+-+|.+-.+|++.++|.=+.++++|.-.+.++..
T Consensus 612 lnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAF 665 (993)
T KOG4440|consen 612 LNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAF 665 (993)
T ss_pred cchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhh
Confidence 578889999988888889999999999999999999999999999888877765
No 120
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=30.17 E-value=99 Score=29.28 Aligned_cols=56 Identities=16% Similarity=0.098 Sum_probs=38.1
Q ss_pred CcCCeeeeecCCCCCcccchHHHHHHHHhCCCCHHHH-----------HHHHhhhcccCCCCCcccc
Q 040114 315 TLGDLVAADLDNDGSISKSEFVIYKLKEMGKIAEKDI-----------LQICNQFDLIDDSKCGKIT 370 (378)
Q Consensus 315 ~~~~l~~~d~d~d~~v~~~e~~~~~L~~~g~is~edi-----------~~i~~~f~~ld~~~~G~l~ 370 (378)
..-++.++|-++||.++=.||....++..|+-..|-. .+-.++|.+-+.|..|.++
T Consensus 142 SkthFraVDpdgDGhvsWdEykvkFlaskghsekevadairlneelkVDeEtqevlenlkdRwyqaD 208 (362)
T KOG4251|consen 142 SKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVADAIRLNEELKVDEETQEVLENLKDRWYQAD 208 (362)
T ss_pred hhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHHHHhhccCcccccHHHHHHHHhhhhhhcccc
Confidence 3446789999999999999999988888887544332 2223445555555555543
No 121
>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=29.85 E-value=1e+02 Score=33.17 Aligned_cols=52 Identities=19% Similarity=0.262 Sum_probs=37.7
Q ss_pred ccceeEEEEEEeccccCCcccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040114 246 VDSFYLSVTSVTTVGYGDYAFTTLTGRCFAIIWLLVSTLAVARAFLYLTELRI 298 (378)
Q Consensus 246 ~da~Y~~~~T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~va~~~~~l~~~~~ 298 (378)
..++|+++.++..-|-+ ..|.+..+|++..+|.++++.+.+.-.+.++....
T Consensus 383 ~~~~~~~~~~~~~q~~~-~~p~~~~~Rll~~~w~~~~lil~ssYTa~L~a~Lt 434 (656)
T KOG1052|consen 383 LNCLWLTVGSLLQQGSD-EIPRSLSTRLLLGAWWLFVLILISSYTANLTAFLT 434 (656)
T ss_pred ccchhhhhHHHhccCCC-ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444445555544 88999999999999999999888877777776643
No 122
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=28.98 E-value=17 Score=20.82 Aligned_cols=14 Identities=36% Similarity=0.456 Sum_probs=9.8
Q ss_pred CCCCCccccccccc
Q 040114 362 DDSKCGKITVADLM 375 (378)
Q Consensus 362 d~~~~G~l~~~d~~ 375 (378)
|+|++|.++.-|+.
T Consensus 1 DvN~DG~vna~D~~ 14 (21)
T PF00404_consen 1 DVNGDGKVNAIDLA 14 (21)
T ss_dssp -TTSSSSSSHHHHH
T ss_pred CCCCCCcCCHHHHH
Confidence 67888888877653
No 123
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=27.35 E-value=29 Score=27.14 Aligned_cols=28 Identities=11% Similarity=0.145 Sum_probs=18.1
Q ss_pred HHHHHHHHhhhcccCC-CC-Cccccccccc
Q 040114 348 EKDILQICNQFDLIDD-SK-CGKITVADLM 375 (378)
Q Consensus 348 ~edi~~i~~~f~~ld~-~~-~G~l~~~d~~ 375 (378)
++-+..+...|++.|. |+ +|.|+.+||.
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~ 35 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELK 35 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHH
Confidence 3455566666777776 55 6777777764
No 124
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=27.06 E-value=25 Score=37.09 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=33.6
Q ss_pred CCccceeeeeeeeeeeeec--ccccccCccCceeeehhhhhh
Q 040114 139 FKPVDALYFIVVTLCTIGY--GDIVPDTTFTKLFTCVFILIG 178 (378)
Q Consensus 139 ~~~~~a~yf~~vtltTvGy--Gdi~P~t~~g~~~~~~~~l~G 178 (378)
+.+.+.+|=......|+|. |.+.+.|+.+|+..++-+++|
T Consensus 450 hgfseiLyE~~SA~~tnGss~gGLt~~t~~~niil~~~M~iG 491 (559)
T PRK05482 450 HGFSEVLYAYTSAAANNGSAFAGLGANTPFWNLTLGIAMLLG 491 (559)
T ss_pred CCHHHHHHHHHhhccccccccccCCCCCHHHHHHHHHHHHHH
Confidence 5788888877888899986 568899999999988888876
No 125
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=25.63 E-value=95 Score=21.77 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=21.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHhhhcc
Q 040114 335 FVIYKLKEMGKIAEKDILQICNQFDL 360 (378)
Q Consensus 335 ~~~~~L~~~g~is~edi~~i~~~f~~ 360 (378)
..+..|...|+++++-...+..+|++
T Consensus 17 dtLDeli~~~~I~p~La~kVL~~FDk 42 (49)
T PF02268_consen 17 DTLDELIQEGKITPQLAMKVLEQFDK 42 (49)
T ss_dssp HHHHHHHHTTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 44567888999999999999999985
No 126
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=24.81 E-value=13 Score=33.44 Aligned_cols=52 Identities=19% Similarity=0.196 Sum_probs=40.8
Q ss_pred CCCCCCCccceeeeeeeeeeeeecccccccCccCceeeehhhhhhhhhhhhh
Q 040114 134 KGKATFKPVDALYFIVVTLCTIGYGDIVPDTTFTKLFTCVFILIGFGFVDIL 185 (378)
Q Consensus 134 ~~~~~~~~~~a~yf~~vtltTvGyGdi~P~t~~g~~~~~~~~l~Gi~~~~~~ 185 (378)
.+.+..+|.|-+||+++.-+|-.=-|+.+.|..-|-....-.++...+-+.+
T Consensus 126 P~~~~P~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fnt~i 177 (180)
T PF07077_consen 126 PGDWEPDYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFNTVI 177 (180)
T ss_pred CCCCCCCchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567999999999999999999999999988887777776655544443
No 127
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=24.66 E-value=39 Score=26.48 Aligned_cols=28 Identities=11% Similarity=0.226 Sum_probs=19.4
Q ss_pred HHHHHHHHhhhcc-cCCCCCc-cccccccc
Q 040114 348 EKDILQICNQFDL-IDDSKCG-KITVADLM 375 (378)
Q Consensus 348 ~edi~~i~~~f~~-ld~~~~G-~l~~~d~~ 375 (378)
++-+..+...|++ .|.||+| +|+.+||.
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk 34 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFL 34 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHH
Confidence 3456667777888 6677765 78877763
No 128
>PF03699 UPF0182: Uncharacterised protein family (UPF0182); InterPro: IPR005372 This family contains uncharacterised integral membrane proteins.; GO: 0016021 integral to membrane
Probab=23.58 E-value=1.5e+02 Score=32.86 Aligned_cols=31 Identities=32% Similarity=0.283 Sum_probs=18.1
Q ss_pred EEeccccCCcccCCcchhHHHHHHHHHHHHH
Q 040114 255 SVTTVGYGDYAFTTLTGRCFAIIWLLVSTLA 285 (378)
Q Consensus 255 T~tTVGyGD~~p~t~~gr~f~~~~il~g~~~ 285 (378)
.++.-||-|+.-.=+.-.+++++.+++++.+
T Consensus 232 ~v~GagYtDv~a~Lp~~~il~~i~~~~A~~~ 262 (774)
T PF03699_consen 232 VVYGAGYTDVHATLPAYTILAVIALLCAVLF 262 (774)
T ss_pred eEeCCCceeeeeHHHHHHHHHHHHHHHHHHH
Confidence 3677899998765444444544444444443
No 129
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=21.95 E-value=53 Score=33.73 Aligned_cols=48 Identities=23% Similarity=0.296 Sum_probs=37.1
Q ss_pred CCCCCcccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114 325 DNDGSISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 325 d~d~~v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~ 375 (378)
..+|.++-.+|+-.-|.+.+|-++.-+.- =|+-+|.+++|.|+..||.
T Consensus 327 ~~eGrmdykdFv~FilA~e~k~t~~SleY---wFrclDld~~G~Lt~~el~ 374 (493)
T KOG2562|consen 327 KVEGRMDYKDFVDFILAEEDKDTPASLEY---WFRCLDLDGDGILTLNELR 374 (493)
T ss_pred eecCcccHHHHHHHHHHhccCCCccchhh---heeeeeccCCCcccHHHHH
Confidence 34667888888776677777777766644 4899999999999998873
No 130
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=21.71 E-value=85 Score=28.36 Aligned_cols=49 Identities=22% Similarity=0.232 Sum_probs=31.6
Q ss_pred CCCCC-cccchHHHHHHHHhCCCCHHHHHHHHhhhcccCCCCCccccccccc
Q 040114 325 DNDGS-ISKSEFVIYKLKEMGKIAEKDILQICNQFDLIDDSKCGKITVADLM 375 (378)
Q Consensus 325 d~d~~-v~~~e~~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~l~~~d~~ 375 (378)
++++. ++-.+|+...=.-..+.+++ .++.=.|+-.|-|++|.|+.+||.
T Consensus 78 ~~~~~~v~F~~Fv~~ls~f~~~~~~~--~Kl~faF~vYD~~~~G~I~reel~ 127 (187)
T KOG0034|consen 78 DGNGDPVDFEEFVRLLSVFSPKASKR--EKLRFAFRVYDLDGDGFISREELK 127 (187)
T ss_pred cCCCCccCHHHHHHHHhhhcCCccHH--HHHHHHHHHhcCCCCCcCcHHHHH
Confidence 34444 77777775443345555555 344446888888888888888874
No 131
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=21.34 E-value=70 Score=29.38 Aligned_cols=49 Identities=31% Similarity=0.395 Sum_probs=39.9
Q ss_pred eeeecCCCCCcccchH-HHHHHHHhCCCCHHHHHHHHhhhcccCCCCCcc
Q 040114 320 VAADLDNDGSISKSEF-VIYKLKEMGKIAEKDILQICNQFDLIDDSKCGK 368 (378)
Q Consensus 320 ~~~d~d~d~~v~~~e~-~~~~L~~~g~is~edi~~i~~~f~~ld~~~~G~ 368 (378)
.-+|-|.||.++-.|| +++.....|...++..+....+-.+.|+.+-|-
T Consensus 142 keVded~dgklSfreflLIfrkaaagEL~~ds~~~~LAr~~eVDVskeGV 191 (244)
T KOG0041|consen 142 KEVDEDFDGKLSFREFLLIFRKAAAGELQEDSGLLRLARLSEVDVSKEGV 191 (244)
T ss_pred HHhhcccccchhHHHHHHHHHHHhccccccchHHHHHHHhcccchhhhhh
Confidence 3467889999998887 577778889998888888888888889887775
Done!